BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010459
         (510 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
           chloroplastic-like [Glycine max]
          Length = 509

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 298/501 (59%), Positives = 386/501 (77%), Gaps = 13/501 (2%)

Query: 11  NNNNTHCKVRL---NKNKKNKLTHDRVFFAKTLI--RKPISCCCLSSAPSLDYH---STK 62
           ++N +H  V L   N N +   + +   F K  +  R   +  C SS     YH    TK
Sbjct: 6   SHNQSHFLVVLLNSNSNCRGSKSGNNTVFRKPFVKFRTLTTQICHSS-----YHRFADTK 60

Query: 63  HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI 122
           HTTLLVE+YH H +L AL+ +L K+   PL +L  DGDW+KDHFWAV+RFLK++SR  QI
Sbjct: 61  HTTLLVETYHLHDSLRALLAKLQKEDCNPLHVLAEDGDWSKDHFWAVVRFLKSASRFTQI 120

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            QVFDMWKNIEKSRI+EFN  KIIG+LCE G ME+A+ A ++M+   +KPSL+ YN IIH
Sbjct: 121 LQVFDMWKNIEKSRISEFNYNKIIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYNPIIH 180

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G S+ GKF++AL F++EMKE  L   S+TYDGL+ AYGK++MYDE+  C+K M+L+GCSP
Sbjct: 181 GLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELEGCSP 240

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           DHITYN+LIQE+A AGLL+RME  Y+ M++KRMH++SST+VA+L+AY  FGM++KME FY
Sbjct: 241 DHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVAMLEAYTTFGMVEKMENFY 300

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
           +++L+S+T L++DL+RK+AEVYIKNYMFSRL+DL  DL    G + LVWCLRLLS+AC L
Sbjct: 301 RKILSSKTCLEDDLIRKVAEVYIKNYMFSRLEDLALDLCPAFGESNLVWCLRLLSYACPL 360

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           S +G+D VVREM  AKV WNVT ANII+LAY+KMKDF+HL++LLS+LP   V+PDI+TIG
Sbjct: 361 SKKGMDIVVREMRDAKVNWNVTVANIIMLAYVKMKDFRHLKILLSQLPIYRVQPDIITIG 420

Query: 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPY 482
           IL+DA RIGFDG+GALE W+R+G+L++ VEI TD LVL  +GKGHFL+ CEEVYSSL P 
Sbjct: 421 ILFDATRIGFDGSGALETWRRMGYLYRVVEIKTDSLVLTAFGKGHFLKSCEEVYSSLHPE 480

Query: 483 SREKKRWTYQNLIDLVIKHNG 503
            R++K WTY +LI L+ KH G
Sbjct: 481 DRKRKTWTYHDLIALLSKHTG 501


>gi|255550708|ref|XP_002516403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544501|gb|EEF46020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 502

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/465 (63%), Positives = 368/465 (79%), Gaps = 5/465 (1%)

Query: 48  CCLSSAP----SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTK 103
           C   SAP    S D +S KH TLLVESYHEHQ L AL+ RLNKK SCPLQ+LQ D DW+K
Sbjct: 39  CFRRSAPLHAISQD-NSIKHNTLLVESYHEHQRLKALLARLNKKGSCPLQMLQDDADWSK 97

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           DHFWAVIRFL++SSRS +I QVFDMWK+IEKSRINEFN +K+I +L EEGL+E+A  AF 
Sbjct: 98  DHFWAVIRFLRHSSRSDEILQVFDMWKDIEKSRINEFNYEKVIEILGEEGLIEDAYSAFI 157

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EM+   L PSL++YNS+IHGY++ GKF++A+ +LN +KE+NLSP SDTY+GLIQAYGKYK
Sbjct: 158 EMKTLCLSPSLQVYNSLIHGYARNGKFDDAVFYLNHLKEINLSPVSDTYNGLIQAYGKYK 217

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           MYDE+ MCLK M+++GCSPDH+TYNLLIQE A AGLL RME  Y++    RM L+S+T+ 
Sbjct: 218 MYDEMGMCLKKMEMEGCSPDHVTYNLLIQELAEAGLLTRMEKVYQTTRMNRMDLKSTTLT 277

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           A+L+AY NFG+++KME   KR  NS+  LKEDL++K+A VYI+N+MFSRL+ LG  L+ R
Sbjct: 278 AMLEAYANFGIVEKMELILKRTRNSKALLKEDLIKKIALVYIENFMFSRLEKLGHYLSKR 337

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
            G+ ++VWCL LLS+AC+LS +G+DSVVREM+ AKV WNVT  NIILLAYLKMKD   L 
Sbjct: 338 SGQNDMVWCLLLLSNACMLSQKGMDSVVREMKVAKVSWNVTFINIILLAYLKMKDSMRLG 397

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVY 463
           +LLS L    VKPDIVT+G+L+DA  IGF G G LE W+R G L++ VE  TDPLVLA +
Sbjct: 398 ILLSTLTNHIVKPDIVTVGVLFDANNIGFHGNGILETWRRTGILYRCVETETDPLVLAAF 457

Query: 464 GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508
           GKG FL+ CEE YSSLEP +R+K++WTY NLIDLV  ++G  ++G
Sbjct: 458 GKGQFLKKCEEAYSSLEPVARQKEKWTYCNLIDLVATYDGSVVNG 502


>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
           chloroplastic-like [Glycine max]
          Length = 506

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/485 (58%), Positives = 370/485 (76%)

Query: 19  VRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALN 78
           V LN N +   +     F K   +       +  A    +  TKHTTLLVE+YH H +L 
Sbjct: 15  VLLNSNCRGSKSSSNTVFRKPFAKFSSLTTKICHASYHRFADTKHTTLLVETYHLHHSLR 74

Query: 79  ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN 138
           AL+ +L  + S PL +L  D DW+KDHFWAV+RFLK+SS    I QVFDMWKNIEKSRI+
Sbjct: 75  ALLAKLENEYSNPLHMLAEDADWSKDHFWAVVRFLKSSSNFTHILQVFDMWKNIEKSRIS 134

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           EFN  KIIG+LCE G M++A+ A Q+M+   +KPSL+ YN IIHG S+ GKF++AL F++
Sbjct: 135 EFNYNKIIGLLCEGGKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFID 194

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EMKE  L   S+TYDGLI AYGK++MYDE+  C+K M+L+GCSPD ITYN+LIQE+A  G
Sbjct: 195 EMKESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGG 254

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LL+RME  Y+ ML+KRMH++SST+VA+L+AY  FGM++KMEKFY+++LNS+T +++DL+R
Sbjct: 255 LLQRMEKLYQRMLSKRMHVKSSTLVAMLEAYTTFGMVEKMEKFYRKILNSKTCIEDDLIR 314

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           K+AEVYI N+MFSRL+DL  DL    G + L WC RLLS+ACLLS +G+D VV+EM+ AK
Sbjct: 315 KVAEVYINNFMFSRLEDLALDLCPAFGESNLEWCFRLLSYACLLSKKGMDIVVQEMQDAK 374

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V WNVT ANII+LAY+KMK+F+HLR+LLS+LP   V+PDI+TIGIL+DA RIGFDG+GAL
Sbjct: 375 VSWNVTVANIIMLAYVKMKEFRHLRILLSQLPIYRVQPDIITIGILFDATRIGFDGSGAL 434

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           E W+R+G+L++ VE+ TD LVL  +GKGHFL+ CEEVYSSL P  R++K  TY +LI L+
Sbjct: 435 ETWRRMGYLYRVVEMKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRKRKTCTYHDLIPLL 494

Query: 499 IKHNG 503
            KH G
Sbjct: 495 SKHTG 499


>gi|225463331|ref|XP_002268109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
           chloroplastic-like [Vitis vinifera]
          Length = 581

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/435 (64%), Positives = 357/435 (82%)

Query: 59  HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR 118
           + TKHTTLLVE+ HE++ L  LIQ+L+ K S PLQ+L+ DGDW K HFWAVIRFLK++SR
Sbjct: 85  NPTKHTTLLVETLHENERLGVLIQKLSNKASSPLQLLRDDGDWNKQHFWAVIRFLKDASR 144

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           S +I  VF +WK+++KSRINEFN  KIIG+L +E L EE+V A + M+   LKPSLEIYN
Sbjct: 145 SSEILPVFHLWKDMDKSRINEFNYAKIIGLLSQEDLAEESVLALEGMKTHGLKPSLEIYN 204

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +IH +++ G+F+ AL FLNE+K  NL   ++TYDGLIQ+YGKYKMYDE+D C+K M+ D
Sbjct: 205 LVIHCFARKGEFDRALYFLNELKANNLIADTETYDGLIQSYGKYKMYDELDECVKKMESD 264

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC PDHITYNLLIQEF+  GLLKRME  ++++L+K+M L+SST+V +L+AY NFG+++KM
Sbjct: 265 GCLPDHITYNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTLVVMLEAYANFGIIEKM 324

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           E  Y+R+LNS+T LK+DL+RKLAEVYI+NY FSRL D+G +LAS   RT+LVWCLRLLSH
Sbjct: 325 ENAYRRVLNSKTSLKDDLIRKLAEVYIENYKFSRLADMGLNLASVTSRTDLVWCLRLLSH 384

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           ACLLS +G+DS+V+EME+  V WN T AN ILLAYLKMKDF  LR+LL EL TRHVKPDI
Sbjct: 385 ACLLSRKGLDSIVKEMEAKNVPWNATVANTILLAYLKMKDFTRLRILLLELSTRHVKPDI 444

Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
           VT+GIL+DA RIGF+GT AL  W+R GFL + VE+NTDPLVL+ +GKG+FL+ CEE+YSS
Sbjct: 445 VTVGILFDANRIGFNGTMALNTWRRTGFLDEAVEMNTDPLVLSAFGKGNFLQSCEEMYSS 504

Query: 479 LEPYSREKKRWTYQN 493
           LEP +R+KK WTYQN
Sbjct: 505 LEPEARKKKIWTYQN 519


>gi|224131534|ref|XP_002321108.1| predicted protein [Populus trichocarpa]
 gi|222861881|gb|EEE99423.1| predicted protein [Populus trichocarpa]
          Length = 419

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/419 (64%), Positives = 330/419 (78%), Gaps = 17/419 (4%)

Query: 97  HDGDWTKDHFWAVIRFLKNSSRSRQIPQV-----------------FDMWKNIEKSRINE 139
            DGDW+KD FW+VI+FLK S+RS QI QV                 F MW+++EK+RINE
Sbjct: 1   QDGDWSKDDFWSVIKFLKLSARSNQILQVHSLAHLFFLAARKIEFVFHMWRDVEKTRINE 60

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN +KIIG+L EEGLME+AV AF EM+ F L  SLE+YNSIIHGY++ GKF++AL +LN+
Sbjct: 61  FNYEKIIGLLGEEGLMEDAVTAFMEMKSFGLCLSLEVYNSIIHGYARNGKFDDALFYLNQ 120

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M EMNLSP+SDTYDGLI+AYG Y+MYDE+ MCLK M+LDGCSPD  TYNLLIQ+FA  GL
Sbjct: 121 MNEMNLSPESDTYDGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQKFAQGGL 180

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L RME  Y+SM TKRM L+SST++++L+AY NFG+++KMEK  +   NS+  +KEDLVRK
Sbjct: 181 LTRMERVYQSMRTKRMKLQSSTLISMLEAYANFGIVEKMEKILRWAWNSKITVKEDLVRK 240

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           LA VYI NYMFSRL DL  DL S  GRT++VWCL LLSHACLLS RG+D+VVREME AK 
Sbjct: 241 LAGVYIANYMFSRLHDLAVDLTSITGRTDIVWCLHLLSHACLLSRRGMDAVVREMEDAKA 300

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            WN+T ANIILLAYLKMKDF  LR+LLS+LP   V+PDIVT GIL+DA  IGFDG   LE
Sbjct: 301 CWNITVANIILLAYLKMKDFTRLRILLSKLPEIRVEPDIVTFGILFDAEEIGFDGKECLE 360

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           MW+++G L++ VE+NTDPL L+ +GKG FLR CEE YSSLEP +REKKRWTY + I+LV
Sbjct: 361 MWRKMGLLYRRVEMNTDPLALSAFGKGSFLRSCEEGYSSLEPNAREKKRWTYVDFINLV 419


>gi|147862853|emb|CAN80932.1| hypothetical protein VITISV_017362 [Vitis vinifera]
          Length = 1697

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/366 (64%), Positives = 298/366 (81%)

Query: 67   LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
            LVE+ HE++ L  LIQ+L+ K S PLQ+L+ DGDW K HFWAVIRFLK++SRS +I  VF
Sbjct: 1332 LVETLHENERLGVLIQKLSNKASSPLQLLRDDGDWNKQHFWAVIRFLKDASRSSEILPVF 1391

Query: 127  DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
             +WK+++KSRINEFN  KIIG+L +E L EE+V A + M+   LKPSLEIYN +IH +++
Sbjct: 1392 HLWKDMDKSRINEFNYAKIIGLLSQEDLAEESVLALEXMKTHGLKPSLEIYNLVIHCFAR 1451

Query: 187  IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             G+F+ AL FLNE+K  NL   ++TYDGLIQ+YGKYKMYDE+D C+K M+ DGC PDHIT
Sbjct: 1452 KGEFDRALYFLNELKXNNLIADTETYDGLIQSYGKYKMYDELDECVKKMESDGCLPDHIT 1511

Query: 247  YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            YNLLIQEF+  GLLKRME  ++++L+K+M L+SST+V +L+AY NFG+++KME  Y+R+L
Sbjct: 1512 YNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTLVVMLEAYANFGIIEKMENAYRRVL 1571

Query: 307  NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            NS+T LK+DL+RKLAEVYI+NY FSRL D+G DLAS   RT+LVWCLRLLSHACLLS +G
Sbjct: 1572 NSKTSLKDDLIRKLAEVYIENYKFSRLADMGLDLASVTSRTDLVWCLRLLSHACLLSRKG 1631

Query: 367  IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            +DS+V+EME+  V WN T AN ILLAYLKMKDF  LR+LL EL TRHVKPDIVT+GIL+D
Sbjct: 1632 LDSIVKEMEAKNVPWNATVANTILLAYLKMKDFTRLRILLLELSTRHVKPDIVTVGILFD 1691

Query: 427  ARRIGF 432
            A RI F
Sbjct: 1692 ANRIEF 1697


>gi|79474381|ref|NP_193155.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635638|sp|O23278.2|PP310_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14190, chloroplastic; Flags: Precursor
 gi|332657991|gb|AEE83391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 501

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/472 (55%), Positives = 336/472 (71%), Gaps = 8/472 (1%)

Query: 35  FFAKTLIRKPISCCCLSSAP-SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQ 93
           F   T    P       S P S++  +T+ T+LL    H H+ L++L +RL+   SCPL+
Sbjct: 30  FLTSTSYSIPRPSSLRRSLPLSINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLR 85

Query: 94  ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
           +LQ DGDW+KDHFWAVIRFL+ SSR  +I  VFD WKN+E SRI+E N ++II  LCEE 
Sbjct: 86  LLQEDGDWSKDHFWAVIRFLRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEK 145

Query: 154 LMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE  L P ++TY
Sbjct: 146 SMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETY 205

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           DGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKRME  Y+S+++
Sbjct: 206 DGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMS 265

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           ++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI+N MFSR
Sbjct: 266 RKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSR 325

Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
           LDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LL
Sbjct: 326 LDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALL 385

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           AY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    WK+IGFL K V
Sbjct: 386 AYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPV 445

Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
           E+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K+ 
Sbjct: 446 EMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497


>gi|297800842|ref|XP_002868305.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314141|gb|EFH44564.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 502

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/451 (55%), Positives = 335/451 (74%), Gaps = 6/451 (1%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLK 114
           S++  +++ T+L+   +H H+ L++L +RL    SCPL++LQ  GDW+KDHFWAVIRFL+
Sbjct: 51  SINGDASQSTSLI---HHHHRFLSSLPRRLELPGSCPLRLLQEYGDWSKDHFWAVIRFLR 107

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPS 173
           +SSR  +I  VFD WKN+E+SRI+E N +++I +LCEE  M EA+RAF+ M +   L PS
Sbjct: 108 HSSRLHEILPVFDAWKNLERSRISEANYERVIRLLCEEKSMNEAIRAFRGMIDDHELSPS 167

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           LEIYNSIIHGY+  GKF EA+ +LN MKE  L P ++TYDGLI+AYGK+KMYDEI +CLK
Sbjct: 168 LEIYNSIIHGYADEGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLCLK 227

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+ +GC  DH+TYNLLI+EF+  GLLKRME  Y+S+++++M L  ST++++L+AY  FG
Sbjct: 228 RMESEGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFG 287

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWC 352
           +++KME+   +++     L E LVRKLA VYI N MFSRLDDLG  + +SR  RT+L WC
Sbjct: 288 LIEKMEETCNKIIRFGISLDEGLVRKLANVYIDNLMFSRLDDLGRGISSSRTRRTDLAWC 347

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           LRLL HA L+S +G+D V++EM+ A+V WN T ANI LLAY KM DFK + +LLSEL T+
Sbjct: 348 LRLLCHARLVSRKGLDYVIKEMKEARVPWNTTFANITLLAYSKMGDFKSIELLLSELRTK 407

Query: 413 HVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           HVK D+VT+GI++D    GFD TG    WK+IGFL K VE+ TDPLV A +GKG FL+ C
Sbjct: 408 HVKLDLVTVGIIFDLSEAGFDVTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGKFLKSC 467

Query: 473 EEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
           EEV + SL     E K WTYQ L+++V+K+ 
Sbjct: 468 EEVKNQSLGMRGEESKAWTYQYLMEVVVKNQ 498


>gi|2244775|emb|CAB10198.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268124|emb|CAB78461.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 561

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/422 (57%), Positives = 304/422 (72%), Gaps = 16/422 (3%)

Query: 97  HDGDWTKDHFWAVIRFLKNSSRSRQI-P------------QVFDMWKNIEKSRINEFNSQ 143
            DGDW+KDHFWAVIRFL+ SSR  +I P            QVFD WKN+E SRI+E N +
Sbjct: 136 EDGDWSKDHFWAVIRFLRQSSRLHEILPNMKMTFCFFFQLQVFDTWKNLEPSRISENNYE 195

Query: 144 KIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +II  LCEE  M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE
Sbjct: 196 RIIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKE 255

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             L P ++TYDGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKR
Sbjct: 256 NGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKR 315

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA 
Sbjct: 316 MEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAN 375

Query: 323 VYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V W
Sbjct: 376 VYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPW 435

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    W
Sbjct: 436 NTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTW 495

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIK 500
           K+IGFL K VE+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K
Sbjct: 496 KKIGFLDKPVEMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVK 555

Query: 501 HN 502
           + 
Sbjct: 556 NQ 557


>gi|255685506|gb|ACU28242.1| At4g14190-like protein [Arabidopsis thaliana]
          Length = 177

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY+ FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYVEFGLIEKMEETCNKIIRFGISLDEGLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177


>gi|255685436|gb|ACU28207.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685446|gb|ACU28212.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685448|gb|ACU28213.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685450|gb|ACU28214.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685452|gb|ACU28215.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685458|gb|ACU28218.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685460|gb|ACU28219.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685466|gb|ACU28222.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685470|gb|ACU28224.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685474|gb|ACU28226.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685478|gb|ACU28228.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685492|gb|ACU28235.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685498|gb|ACU28238.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685500|gb|ACU28239.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685502|gb|ACU28240.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685508|gb|ACU28243.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685510|gb|ACU28244.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685512|gb|ACU28245.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685516|gb|ACU28247.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685518|gb|ACU28248.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685520|gb|ACU28249.1| At4g14190-like protein [Arabidopsis thaliana]
          Length = 177

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177


>gi|255685514|gb|ACU28246.1| At4g14190-like protein [Arabidopsis thaliana]
          Length = 177

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEVLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177


>gi|255685430|gb|ACU28204.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685432|gb|ACU28205.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685434|gb|ACU28206.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685438|gb|ACU28208.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685440|gb|ACU28209.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685442|gb|ACU28210.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685444|gb|ACU28211.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685454|gb|ACU28216.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685456|gb|ACU28217.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685462|gb|ACU28220.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685464|gb|ACU28221.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685468|gb|ACU28223.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685472|gb|ACU28225.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685476|gb|ACU28227.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685480|gb|ACU28229.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685484|gb|ACU28231.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685486|gb|ACU28232.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685490|gb|ACU28234.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685494|gb|ACU28236.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685496|gb|ACU28237.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685504|gb|ACU28241.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685522|gb|ACU28250.1| At4g14190-like protein [Arabidopsis thaliana]
          Length = 177

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 129/177 (72%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+  +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVRRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177


>gi|255685482|gb|ACU28230.1| At4g14190-like protein [Arabidopsis thaliana]
 gi|255685488|gb|ACU28233.1| At4g14190-like protein [Arabidopsis thaliana]
          Length = 177

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 129/177 (72%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCTKIIRFGISLDEGLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+  +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVRRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177


>gi|168020157|ref|XP_001762610.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686343|gb|EDQ72733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 418

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 195/401 (48%), Gaps = 12/401 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           FW VI +L    R  +I +VF  W+  +  +  E    KII ML +  +  EA   F EM
Sbjct: 9   FWTVIDYLHGHRRMAEILEVFKWWQQQDGYKPYELYYTKIIRMLGQAHMPTEARTLFIEM 68

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYDGLIQAYGKYKM 224
               L+PS+  Y  ++ GY++ G+F EA   L +M    +  P + TY GLI AYGK+ M
Sbjct: 69  CELGLRPSVVTYTYLLQGYAERGEFEEAEQILRDMILSGDAKPNTTTYAGLIYAYGKHGM 128

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           YD +      MK      D  +Y  LI+ +A  GL  RM+ T K M    M+  S+TM A
Sbjct: 129 YDRMWRTFNRMKTQHIPADEFSYRTLIKAYARGGLFSRMQQTMKEMSRNGMYADSATMNA 188

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           ++ AY   G++ +MEK Y+ +  +     ++ ++ +   Y+K+ +F +L         R+
Sbjct: 189 VVLAYAEAGLVKEMEKQYEVMWKNSFTAGQETIKAIVRAYVKDSLFFQL----SGYVKRV 244

Query: 345 G---RTEL--VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
           G   RT +  +W   LLSHA  L+   +    + M+      +VTT NI+ LAY + K  
Sbjct: 245 GLRKRTMVNYLWNALLLSHAANLAMDDLGVDFQNMKYLGFSPDVTTCNIMALAYSRAKQL 304

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
           + L  L+  +    + PD+VT G + D           LE       L    E+ TDPLV
Sbjct: 305 EDLHQLIVTMQDNGIAPDLVTYGAVIDVFTEEKLRPNLLEELVEFRNLDVAAEVETDPLV 364

Query: 460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
             V GKG F   CE++  ++E   R  +R TY  L+   ++
Sbjct: 365 FEVLGKGRFHVACEKLARNMEG-ERMNQR-TYGELVGCFLQ 403


>gi|168057629|ref|XP_001780816.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667751|gb|EDQ54373.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 184/385 (47%), Gaps = 21/385 (5%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           QI QVF  WK  +  R  E +  K I ML +  +  EA   F EM G  ++PS+  Y  +
Sbjct: 4   QIIQVFTWWKQQDGYRPCELHYTKFIRMLGQARMPTEARALFIEMCGVGIRPSVVTYTCL 63

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMK 236
           +  Y++ G+F EA L L +M    +   S TY     GL+ AYGKY+MYD +      MK
Sbjct: 64  LQSYAERGQFEEAELILEDM----ILSVSWTYVFMCTGLMHAYGKYRMYDGMWRTFNRMK 119

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  PD   Y  LI+ +A  GL  RM+   K M    M+  S+T+ A+  AY   G++ 
Sbjct: 120 TGGVPPDEFAYRTLIKAYAQGGLFDRMQLIAKEMSLDGMYADSATLNAVAQAYAEAGLVK 179

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG---RT--ELVW 351
           +MEK Y+ L           ++ +   Y++N +F +L         R+G   RT    +W
Sbjct: 180 EMEKHYEILRKYSFIPNRTTIKAMVWTYVRNSLFFQL----SRYVKRVGLKRRTMGNYLW 235

Query: 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
              LLS A       +      M+ A    +VTT NI+ +AY +MK F  L  L+  +  
Sbjct: 236 NALLLSRAANFLMDDLRVEFENMKFAGFFPDVTTCNIMAIAYSRMKRFWDLHELIITMQN 295

Query: 412 RHVKPDIVTIGILYDARRIGFD-GTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR 470
             + PD+VT G + D   IG D     LE       L    E+ TDPLV  V+G+G FL 
Sbjct: 296 NGIAPDLVTYGAVIDL-FIGADLRPKLLEELVEFRNLDVLAEMGTDPLVFEVFGRGGFLV 354

Query: 471 YCEEVYSSLEPYSREKKRWTYQNLI 495
            CE +  ++E    +++  TY  LI
Sbjct: 355 ACETLVRNMEGQDMDQR--TYAELI 377


>gi|302402354|gb|ADL38426.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402414|gb|ADL38456.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402416|gb|ADL38457.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402418|gb|ADL38458.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402420|gb|ADL38459.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402422|gb|ADL38460.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402424|gb|ADL38461.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402426|gb|ADL38462.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402428|gb|ADL38463.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402462|gb|ADL38480.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402466|gb|ADL38482.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402470|gb|ADL38484.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402510|gb|ADL38504.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402512|gb|ADL38505.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402532|gb|ADL38515.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402540|gb|ADL38519.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402578|gb|ADL38538.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402582|gb|ADL38540.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402584|gb|ADL38541.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402586|gb|ADL38542.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402588|gb|ADL38543.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402590|gb|ADL38544.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402592|gb|ADL38545.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402604|gb|ADL38551.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402606|gb|ADL38552.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402608|gb|ADL38553.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402612|gb|ADL38555.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402614|gb|ADL38556.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402616|gb|ADL38557.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402618|gb|ADL38558.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402652|gb|ADL38575.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY KM DFK + +LLSEL T
Sbjct: 123 ANITLLAYSKMGDFKSIELLLSELRT 148


>gi|302402366|gb|ADL38432.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402368|gb|ADL38433.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402370|gb|ADL38434.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402372|gb|ADL38435.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402374|gb|ADL38436.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402378|gb|ADL38438.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402380|gb|ADL38439.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402400|gb|ADL38449.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402402|gb|ADL38450.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402404|gb|ADL38451.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402406|gb|ADL38452.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402408|gb|ADL38453.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402412|gb|ADL38455.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402432|gb|ADL38465.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402448|gb|ADL38473.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402450|gb|ADL38474.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402456|gb|ADL38477.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402460|gb|ADL38479.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402478|gb|ADL38488.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402480|gb|ADL38489.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402482|gb|ADL38490.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402484|gb|ADL38491.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402486|gb|ADL38492.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402488|gb|ADL38493.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402490|gb|ADL38494.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402492|gb|ADL38495.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402494|gb|ADL38496.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402496|gb|ADL38497.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402498|gb|ADL38498.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402500|gb|ADL38499.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402502|gb|ADL38500.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402504|gb|ADL38501.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402506|gb|ADL38502.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402508|gb|ADL38503.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402580|gb|ADL38539.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402598|gb|ADL38548.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402602|gb|ADL38550.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402622|gb|ADL38560.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402384|gb|ADL38441.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402386|gb|ADL38442.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402388|gb|ADL38443.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402390|gb|ADL38444.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402392|gb|ADL38445.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402430|gb|ADL38464.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402434|gb|ADL38466.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402436|gb|ADL38467.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402438|gb|ADL38468.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402440|gb|ADL38469.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402442|gb|ADL38470.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402444|gb|ADL38471.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402458|gb|ADL38478.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402514|gb|ADL38506.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402516|gb|ADL38507.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402522|gb|ADL38510.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402524|gb|ADL38511.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402526|gb|ADL38512.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402530|gb|ADL38514.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402548|gb|ADL38523.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402620|gb|ADL38559.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402640|gb|ADL38569.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402642|gb|ADL38570.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402644|gb|ADL38571.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402646|gb|ADL38572.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402648|gb|ADL38573.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402650|gb|ADL38574.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402654|gb|ADL38576.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402658|gb|ADL38578.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402660|gb|ADL38579.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402662|gb|ADL38580.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402664|gb|ADL38581.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402668|gb|ADL38583.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402670|gb|ADL38584.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402674|gb|ADL38586.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402676|gb|ADL38587.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402682|gb|ADL38590.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402688|gb|ADL38593.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402690|gb|ADL38594.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402692|gb|ADL38595.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402694|gb|ADL38596.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402696|gb|ADL38597.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402698|gb|ADL38598.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402700|gb|ADL38599.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402702|gb|ADL38600.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402704|gb|ADL38601.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402706|gb|ADL38602.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402708|gb|ADL38603.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402710|gb|ADL38604.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402712|gb|ADL38605.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402550|gb|ADL38524.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402636|gb|ADL38567.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402362|gb|ADL38430.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402382|gb|ADL38440.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402394|gb|ADL38446.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402396|gb|ADL38447.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402446|gb|ADL38472.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402452|gb|ADL38475.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402520|gb|ADL38509.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402528|gb|ADL38513.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402594|gb|ADL38546.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402628|gb|ADL38563.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402630|gb|ADL38564.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402634|gb|ADL38566.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402656|gb|ADL38577.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402666|gb|ADL38582.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402680|gb|ADL38589.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402684|gb|ADL38591.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402686|gb|ADL38592.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402454|gb|ADL38476.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402472|gb|ADL38485.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402476|gb|ADL38487.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402672|gb|ADL38585.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402610|gb|ADL38554.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402544|gb|ADL38521.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402678|gb|ADL38588.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402600|gb|ADL38549.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402552|gb|ADL38525.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402558|gb|ADL38528.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402624|gb|ADL38561.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG++ KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIAKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402542|gb|ADL38520.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402546|gb|ADL38522.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V++EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVIKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402376|gb|ADL38437.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402398|gb|ADL38448.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402410|gb|ADL38454.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402562|gb|ADL38530.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402564|gb|ADL38531.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402566|gb|ADL38532.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402568|gb|ADL38533.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402570|gb|ADL38534.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402572|gb|ADL38535.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402574|gb|ADL38536.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402576|gb|ADL38537.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402626|gb|ADL38562.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402632|gb|ADL38565.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L   T++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPCTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D VV+EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVVKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402358|gb|ADL38428.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402364|gb|ADL38431.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402554|gb|ADL38526.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402638|gb|ADL38568.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402534|gb|ADL38516.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402536|gb|ADL38517.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402464|gb|ADL38481.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402560|gb|ADL38529.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302402356|gb|ADL38427.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402360|gb|ADL38429.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402518|gb|ADL38508.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIALLAYSRMGDFKSIELLLSELRT 148


>gi|302402596|gb|ADL38547.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 106/146 (72%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402538|gb|ADL38518.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 106/146 (72%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLATVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402474|gb|ADL38486.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302402556|gb|ADL38527.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 106/146 (72%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY  M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSXMGDFKSIELLLSELRT 148


>gi|302402468|gb|ADL38483.1| At4g14190-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 106/146 (72%), Gaps = 1/146 (0%)

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y+S+++++M L   T++++L+AY  FG+++KME+   +++     L E LVRKLA VYI 
Sbjct: 3   YQSLMSRKMTLEPCTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYID 62

Query: 327 NYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
           N MFSRLDDLG  ++S R  RT+L WCLRLL HA L+S +G+D V +EM+ A+V WN T 
Sbjct: 63  NLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLVSRKGLDYVXKEMKEARVPWNTTF 122

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPT 411
           ANI LLAY +M DFK + +LLSEL T
Sbjct: 123 ANIXLLAYSRMGDFKSIELLLSELRT 148


>gi|302765661|ref|XP_002966251.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
 gi|300165671|gb|EFJ32278.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
          Length = 358

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 155/327 (47%), Gaps = 2/327 (0%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           M  + G    A   F  ME   ++PS+  +++++  Y++ G+   A   +  M +  + P
Sbjct: 1   MASKAGQPHAAQGVFDGMEAMQVRPSVVGFSALVQSYAESGEVEGAQSAMKRMLDTGIQP 60

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY GLI+AYGK  ++DE+   +  MK   C PD   Y  +I+ +A  GL+ RM+  +
Sbjct: 61  NVVTYGGLIRAYGKRGLFDEMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAF 120

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           K+M        S  +  +   Y + GM+ +ME     L   +   +E+ VR  A  YI++
Sbjct: 121 KAMRADGWIPDSDILNLLAQGYASMGMIKEMEGAQGELRRIKGWPREESVRACALAYIRH 180

Query: 328 YMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
             F +++     L   RIG   L   L LL+HA   S + +      M SA+   +VTT 
Sbjct: 181 NQFYQMEGFVKSLGMKRIGGNLLW-NLLLLAHAANFSMKSLQREAVNMWSARCAPDVTTF 239

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF 446
           NI  LA  +M+    L VL+  +    V+PD+VT G L DA  I        E    +  
Sbjct: 240 NIRALALSRMQMLWDLHVLVQHMRAESVRPDLVTYGALVDAYAIARLLPRLPEQLDELDM 299

Query: 447 LFKTVEINTDPLVLAVYGKGHFLRYCE 473
                ++ TDPLV   +G+G F  +C+
Sbjct: 300 ADTIPDVRTDPLVFQAFGRGRFHAFCD 326


>gi|224578303|gb|ACN57825.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L E LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|224578259|gb|ACN57803.1| At4g14190-like protein [Capsella rubella]
 gi|224578261|gb|ACN57804.1| At4g14190-like protein [Capsella rubella]
 gi|224578263|gb|ACN57805.1| At4g14190-like protein [Capsella rubella]
 gi|224578265|gb|ACN57806.1| At4g14190-like protein [Capsella rubella]
 gi|224578267|gb|ACN57807.1| At4g14190-like protein [Capsella rubella]
 gi|224578269|gb|ACN57808.1| At4g14190-like protein [Capsella rubella]
 gi|224578271|gb|ACN57809.1| At4g14190-like protein [Capsella rubella]
 gi|224578273|gb|ACN57810.1| At4g14190-like protein [Capsella rubella]
 gi|224578275|gb|ACN57811.1| At4g14190-like protein [Capsella rubella]
 gi|224578277|gb|ACN57812.1| At4g14190-like protein [Capsella rubella]
 gi|224578279|gb|ACN57813.1| At4g14190-like protein [Capsella rubella]
 gi|224578281|gb|ACN57814.1| At4g14190-like protein [Capsella rubella]
          Length = 131

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 95/131 (72%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L + LVRKLA+VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDDGLVRKLAKVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLDGLRT 131


>gi|224578295|gb|ACN57821.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L E LVRKLA+VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDEGLVRKLAKVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + + L  L T
Sbjct: 121 SIELXLDGLRT 131


>gi|224578311|gb|ACN57829.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L + LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDDGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|224578309|gb|ACN57828.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L   LVRKLA+VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDXGLVRKLAKVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|224578305|gb|ACN57826.1| At4g14190-like protein [Capsella grandiflora]
 gi|224578307|gb|ACN57827.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 93/131 (70%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|224578301|gb|ACN57824.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 93/131 (70%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG ++KME+   +++     L   LVRKLA+VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGXIEKMEETCNKIIRFGISLDXGLVRKLAKVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRXRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLDGLXT 131


>gi|224578299|gb|ACN57823.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG ++KME+   +++     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGXIEKMEETCNKIIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|302801133|ref|XP_002982323.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
 gi|300149915|gb|EFJ16568.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
          Length = 358

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           M  + G    A   F  ME   ++PS+  ++++   Y++ G    A   +  M +  + P
Sbjct: 1   MASKAGQPHAAQGVFDGMEAMQVRPSVVGFSALAQSYAESGDVEGAQSAMRRMLDTGIQP 60

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY GLI+AYGK  ++D++   +  MK   C PD   Y  +I+ +A  GL+ RM+  +
Sbjct: 61  NVVTYGGLIRAYGKRGLFDDMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAF 120

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           K+M        S  +  +   Y + GM+ +ME     L   +   +E+ VR  A  YI++
Sbjct: 121 KAMRADGWIPDSDILNLLAQGYASMGMIKEMEGAQGELRRIKGWPREESVRACALAYIRH 180

Query: 328 YMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
             F +++     L   RIG   L   L LL+HA   S + +      M SA+   +VTT 
Sbjct: 181 DQFYQMEGFVKSLGMKRIGGNLLW-NLLLLAHAANFSMKSLQREAVNMWSARCAPDVTTF 239

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF 446
           NI  LA  +M+    L VL+  +    V+PD+VT G L DA  I        E    +  
Sbjct: 240 NIRALALSRMQMLWDLHVLVQHMRAESVRPDLVTYGALVDAYAIARLLPRLPEQLDELDM 299

Query: 447 LFKTVEINTDPLVLAVYGKGHFLRYCE 473
                ++ TDPLV   +G+G F  +C+
Sbjct: 300 ADTIPDVRTDPLVFQAFGRGRFHAFCD 326


>gi|224578297|gb|ACN57822.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSEL 409
            + +LL  L
Sbjct: 121 SIELLLDGL 129


>gi|224578289|gb|ACN57818.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSBLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + + L  L T
Sbjct: 121 SIELXLDGLRT 131


>gi|224578283|gb|ACN57815.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   +++     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKIIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSBLAWCLRLLCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + + L  L T
Sbjct: 121 SIELXLXGLRT 131


>gi|224578291|gb|ACN57819.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 91/131 (69%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG ++KME+   +++     L E LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGXIEKMEETCNKIIRFGISLDEGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R++L WCLRLL H+ L+S +G+D  ++EM  AKV WN T ANI+LLAY KM D K
Sbjct: 61  YSRTRRSDLAWCLRLLCHSRLVSRKGLDYXLKEMTEAKVTWNTTFANIVLLAYSKMGDXK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIELLLXGLRT 131


>gi|224578285|gb|ACN57816.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 90/131 (68%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG+++KME+   + +     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGVIEKMEETCNKXIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R+ L WCLRL  H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSXLAWCLRLXCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIXLLLDGLRT 131


>gi|224578287|gb|ACN57817.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG ++KME+   + +     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGXIEKMEETCNKXIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R+ L WCLRL  H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSXLAWCLRLXCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIXLLLXGLRT 131


>gi|224578293|gb|ACN57820.1| At4g14190-like protein [Capsella grandiflora]
          Length = 131

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           ++++L+AY  FG ++KME+   + +     L   LVRKLA VYI N MFSRLDDLG  ++
Sbjct: 1   LLSMLEAYAEFGXIEKMEETCNKXIRFGISLDXGLVRKLAXVYIDNLMFSRLDDLGRGIS 60

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            SR  R+ L WCLRL  H+ L+S +G+D V++EM  AKV WN T ANI+LLAY KM DFK
Sbjct: 61  YSRTRRSXLAWCLRLXCHSRLVSRKGLDYVLKEMTEAKVTWNTTFANIVLLAYSKMGDFK 120

Query: 401 HLRVLLSELPT 411
            + +LL  L T
Sbjct: 121 SIXLLLDGLRT 131


>gi|255541504|ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548996|gb|EEF50485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 427

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 167/389 (42%), Gaps = 39/389 (10%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALK-PSLEIYNSIIHGYS 185
           WK  +     E +   ++  L  +     A     EM  +G+ L  P+L   ++I+  Y+
Sbjct: 49  WKQDQSFSCKEVDCASLVQNLHSKRTPHLAQEILLEMKSQGYVLNNPTL---SAILLCYA 105

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             G   +A      M   + +P       LI AY K   ++E+   L  +     S  H 
Sbjct: 106 DNGLLPQAQAIWKHMLNGSFTPSIQIVSRLIDAYSKKGHFNEVMNILDQLSYSNFSLLHE 165

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            Y+L I  F   G L+ ME   K M+ +   +  +T  A +  Y   G L  ME  Y RL
Sbjct: 166 AYSLAISCFGKGGQLQLMENALKDMVLRGFPVDYATGNAFIRYYSIHGSLTDMESAYSRL 225

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE---LVWCLRLLSHACLL 362
             SR  +  + +R ++  Y+K   F RL +   D+   +GR +   L+W   LLS A   
Sbjct: 226 KRSRHLVDREGIRAVSLAYVKERKFYRLGEFLRDVG--LGRKDVGNLIWNFLLLSFAANF 283

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
             + +      M  A    +VTT NI  LA+ +M     L + L  +    V PDIVT G
Sbjct: 284 KMKSLQREFLRMLEAGFHPDVTTFNIRALAFSRMSLLWDLHLTLEHMKHEKVSPDIVTYG 343

Query: 423 ILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCE 473
            + DA   RR+G          K + F  K + ++      TDP V  V GKG F     
Sbjct: 344 CIVDAYLDRRLG----------KNLDFAIKKMNLDGSPVLLTDPFVFEVLGKGDF----- 388

Query: 474 EVYSSLEPY--SREKKRWTYQNLIDLVIK 500
             +SS E +   + +++WTY+ L+ + ++
Sbjct: 389 --HSSAEAFLEFKRQRKWTYRELVSIYLR 415


>gi|75223628|gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis arenosa]
          Length = 419

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 178/391 (45%), Gaps = 37/391 (9%)

Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           K I++S+++   S+KI        +  L +  L + A   F + +   L P+     +++
Sbjct: 34  KLIKESKLSREFSRKIQIVDYAPLVQTLSQRRLPDVAHEIFIQTKSVNLLPNYRTLCALM 93

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             +++ G    A    +E+   +  P       LI AY +   +DE+    K +     +
Sbjct: 94  LCFAENGFVLRARTIWDEILNSSFVPDVFVVSKLISAYEQLGFFDEVAKITKDVAARHST 153

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              + Y+L I  F   G L+ MEG  + M +K M L S+T  AI+  +  FG LDK+E  
Sbjct: 154 LLPVVYSLAISCFGKNGQLELMEGVIEEMDSKGMSLDSATANAIVRYFSFFGTLDKIEHA 213

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
           Y RL      ++E+ +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+
Sbjct: 214 YGRLKKFGIVIEEEEIRAVLLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 271

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A     + +     EM  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+
Sbjct: 272 AAEFKMKSLQREFIEMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDL 331

Query: 419 VTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFL 469
           VT G + DA   +R+           + + F++  + ++      TDPL   V GKG F 
Sbjct: 332 VTFGCVVDAYMDKRLA----------RNLEFVYNQMNLDDSPVVLTDPLAFEVLGKGDFH 381

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
              E V      +S EK  WTY+ LI + +K
Sbjct: 382 LSSEAVLE----FSTEKN-WTYRKLIGVYVK 407


>gi|224118746|ref|XP_002331436.1| predicted protein [Populus trichocarpa]
 gi|222873650|gb|EEF10781.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 168/369 (45%), Gaps = 55/369 (14%)

Query: 148 MLC--EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           MLC  + GL+ +A   ++EM   +  PS+++ + +I  Y+K G F+E +  L+++  +  
Sbjct: 101 MLCYADSGLLPQAQAIWEEMLYSSFVPSVQVISDLIDIYAKSGLFDEVIKILDQLSSLR- 159

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
                T+D L Q                             Y+L I  F   G L+ ME 
Sbjct: 160 -----TFDFLPQ----------------------------VYSLAISCFGKGGQLELMED 186

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
           T K M++K   + S+T  A +  Y   G L +ME  Y RL  SR  ++ + +R ++  YI
Sbjct: 187 TLKKMVSKGFWVDSATGNAFVVYYSLHGSLAEMEAAYDRLKRSRLLIEREGIRAMSFAYI 246

Query: 326 KNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           K   F  L +   D+   R     L+W L LLS++     + +      M  A    ++T
Sbjct: 247 KERKFYGLSEFLRDVGLGRKNLGNLIWNLLLLSYSANFKMKTLQREFLNMLEAGFHPDLT 306

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMW 441
           T NI  LA+ +M     L + L  +    V PD+VT G + DA   RR+       LE  
Sbjct: 307 TFNIRALAFSRMSLLWDLHLGLEHMKHDKVAPDLVTYGCIVDAYLDRRL----VRNLEFA 362

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYS--REKKRWTYQNLIDLVI 499
                +  +  ++TDP V  V+GKG F       +SS E +   + +++WTY+ LI + +
Sbjct: 363 LSKMHVDNSPVLSTDPFVFEVFGKGDF-------HSSSEAFMEFKRQRKWTYRELIKIYL 415

Query: 500 K--HNGKNL 506
           +  H  K++
Sbjct: 416 RKQHRSKHI 424


>gi|225445658|ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
           [Vitis vinifera]
 gi|297736023|emb|CBI24061.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 182/405 (44%), Gaps = 38/405 (9%)

Query: 114 KNSSRSRQIP-QVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           +N S +R +  ++F  WK  E+S   + N  +   +I  L  + L   A     EM+   
Sbjct: 27  QNYSPNRALARKLFWHWKQ-ERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEG 85

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+    ++++  Y+  G F +A    +E+   +  P       LI AYGK   + E+ 
Sbjct: 86  FLPNNSTLSALMLCYADNGLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVT 145

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  +     +  H  Y+L I  F   G L+ ME   K M+++   + S+T  A +  Y
Sbjct: 146 RILHQVSSRDFNFMHEVYSLAISCFGKGGQLEMMENALKEMVSRGFPVDSATGNAFIRYY 205

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
             FG L +ME  Y RL  SR  ++E+ +R ++  YIK   + RL     D+   +GR  +
Sbjct: 206 SIFGSLTEMEAAYDRLKKSRILIEEEGIRAMSFAYIKEKKYYRLGQFLRDVG--LGRKNV 263

Query: 350 ---VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
              +W L LLS+A     + +     EM  A    ++TT NI  LA+ +M  F  L + L
Sbjct: 264 GNLLWNLLLLSYAANFKMKSLQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLSL 323

Query: 407 SELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEINTDPL----- 458
             +    V  D+VT G + DA   RR+G          K + F  K + ++  PL     
Sbjct: 324 EHMQHVKVVADLVTYGCVVDAYLDRRLG----------KNLDFALKKMNMDDSPLVSTDH 373

Query: 459 -VLAVYGKGHFLRYCEEVYSSLEPY--SREKKRWTYQNLIDLVIK 500
            V  V GKG F       +SS E +  S+   +WTY+ LI   +K
Sbjct: 374 FVFEVLGKGDF-------HSSSEAFLESKRNGKWTYRKLIATYLK 411


>gi|75214757|gb|ABA18107.1| pentatricopeptide repeat protein [Capsella rubella]
          Length = 411

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 175/389 (44%), Gaps = 33/389 (8%)

Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           K I++S+++   S+KI        +  L +  L + A   F + +   L P+     +++
Sbjct: 26  KLIKESKLSRVFSRKIQSVDYAPLVQNLSQRTLPDVAYEIFIQSKSDNLLPNYRTLCALM 85

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             +++ G  N A    +EM   +L P       LI AY K    DE+   +K ++     
Sbjct: 86  LCFAENGFVNRARTIWDEMLNSSLEPDLIFISKLISAYVKVGSLDEVAKIIKDVEARYSK 145

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                Y+L +  F   G  + M+G  + +  + M L S+T  AI+  Y +FG LDKME  
Sbjct: 146 LLPSVYSLAVSCFGENGQFELMDGIIEELDIRGMPLDSATANAIVRHYSSFGTLDKMEHA 205

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHAC 360
           Y RL      ++++ +R +   Y+K   F RL +   D+   R     L+W   LLS+A 
Sbjct: 206 YGRLRKFGIVIEDEEIRAVLLAYLKLRKFYRLREFLSDVGLCRRNLGNLLWNSVLLSYAA 265

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               + +      M  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+VT
Sbjct: 266 DFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVT 325

Query: 421 IGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRY 471
            G + DA   RR+           + + F++  + ++      TDPL   V GKG F   
Sbjct: 326 FGCVVDAYMDRRLA----------RNLEFVYNRMNLDDSPAVLTDPLAFEVLGKGDFHLS 375

Query: 472 CEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
            E V   LE   R K  WTY+ LI + +K
Sbjct: 376 SEAV---LEFSPRTK--WTYRKLIGVYLK 399


>gi|75214625|gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis pumila]
          Length = 424

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 168/375 (44%), Gaps = 25/375 (6%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +I   +   ++  L +  L E A   F + +   L P+     +++  +++ G    A +
Sbjct: 53  KIQIVDYASLVQTLSQRRLPEVAYEIFIQTKLDNLLPNYRTLCALMLCFAENGFVLRARM 112

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM   +  P       L+ AY K   +DE+   +K +         + Y+L I  F 
Sbjct: 113 IWDEMLNSSFVPDLLVISKLVFAYEKVGCFDEVVKIIKDVDQRYSKLLPVVYSLGISCFG 172

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G  + MEG  + +  + M L S T  AI+  Y + G L+KMEK Y RL      ++E+
Sbjct: 173 ENGQFELMEGIIEELDLRGMLLDSVTANAIVRYYSSSGNLEKMEKAYGRLRKFGVVIEEE 232

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
            +R +   Y+K   F RL +   D+   R     L+W   LLS+A     + +      M
Sbjct: 233 EIRAVLLAYLKQRKFYRLREFLSDVGLCRRNLGNLLWNSVLLSYAADFKMKSLQREFIGM 292

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIG 431
             A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+VT G + DA   RR+ 
Sbjct: 293 LDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDRRLA 352

Query: 432 FDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCEEVYSSLEPYSRE 485
                     + + F++  + ++      TDPLV  V GKG F    E V   LE   RE
Sbjct: 353 ----------RNLEFVYNRMNLDDSPVVLTDPLVFEVLGKGDFHLSSEAV---LEFSPRE 399

Query: 486 KKRWTYQNLIDLVIK 500
           K  WTY+ LI + +K
Sbjct: 400 K--WTYRKLIGVYLK 412


>gi|42565361|ref|NP_566863.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546757|sp|Q9M2A1.2|PP263_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g42630
 gi|332644221|gb|AEE77742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 415

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 173/391 (44%), Gaps = 37/391 (9%)

Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           K I++S+++   SQKI        +  L +  L + A   F + +   L P+     +++
Sbjct: 30  KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             +++ G    A    +E+      P       LI AY ++  +DE+    K +      
Sbjct: 90  LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              +  +L I  F   G L+ MEG  + M +K + L + T   I+  Y  FG LDKMEK 
Sbjct: 150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
           Y R+      ++E+ +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+
Sbjct: 210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 267

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A     + +      M  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+
Sbjct: 268 AADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDL 327

Query: 419 VTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFL 469
           VT G + DA   +R+           + + F++  + ++      TDPL   V GKG F 
Sbjct: 328 VTFGCVVDAYMDKRLA----------RNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFH 377

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
              E V     P    +K WTY+ LI + +K
Sbjct: 378 LSSEAVL-EFSP----RKNWTYRKLIGVYLK 403


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A++     S++ ++  ++F+  +  E    +++    +I   CE GL  +A + F EM
Sbjct: 72  FTALLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEM 131

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               +KPS+  YN +IHGY K G F E    L+ M+  N++P + T++ LI+ +G     
Sbjct: 132 MIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKI 191

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E++   + +   G  PD +T N LI  +  AGL ++ME   + M      +   T   I
Sbjct: 192 PEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNII 251

Query: 286 LDAYMNFGMLDKMEKFYKRL 305
           ++AY   GM+D+ME+ +KR+
Sbjct: 252 MEAYGRAGMVDQMEETWKRM 271



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 3/285 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++ +  +    ++A+  F+ M  +    P    Y ++I G  + G + +A    +EM   
Sbjct: 75  LLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIE 134

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P   TY+ LI  YGK  ++ E++  L  M+ +  +PD +T+N LI+ F     +  M
Sbjct: 135 GVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEM 194

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  Y+ +L + +     T+ +++ AY   G+ +KME   + +     P+       + E 
Sbjct: 195 EQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEA 254

Query: 324 YIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y +  M  ++++    + A  +      +C  L ++        ++ V+R+        +
Sbjct: 255 YGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAA-D 313

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
               N  + A+ + ++F+ +  +  E+  +   PD VT  IL  A
Sbjct: 314 TAVYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGA 358


>gi|7523388|emb|CAB86446.1| putative protein [Arabidopsis thaliana]
          Length = 412

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 29/377 (7%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +I   +   ++  L +  L + A   F + +   L P+     +++  +++ G    A  
Sbjct: 41  KIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRART 100

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +E+      P       LI AY ++  +DE+    K +         +  +L I  F 
Sbjct: 101 IWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFG 160

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G L+ MEG  + M +K + L + T   I+  Y  FG LDKMEK Y R+      ++E+
Sbjct: 161 KNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEE 220

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSHACLLSHRGIDSVVR 372
            +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+A     + +     
Sbjct: 221 EIRAVVLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSYAADFKMKSLQREFI 278

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RR 429
            M  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+VT G + DA   +R
Sbjct: 279 GMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKR 338

Query: 430 IGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCEEVYSSLEPYS 483
           +           + + F++  + ++      TDPL   V GKG F    E V     P  
Sbjct: 339 LA----------RNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVL-EFSP-- 385

Query: 484 REKKRWTYQNLIDLVIK 500
             +K WTY+ LI + +K
Sbjct: 386 --RKNWTYRKLIGVYLK 400


>gi|255552067|ref|XP_002517078.1| hypothetical protein RCOM_0911140 [Ricinus communis]
 gi|223543713|gb|EEF45241.1| hypothetical protein RCOM_0911140 [Ricinus communis]
          Length = 77

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           RAF+EM+     PSL++YNSIIHGY++ GKF++A+ +LN +KE NL P SDTY+GL+QA+
Sbjct: 7   RAFREMKTLCPSPSLQVYNSIIHGYARNGKFDDAVFYLNHLKEFNLFPVSDTYNGLVQAH 66

Query: 220 GKYKMYDEIDM 230
           GKYKMYDE+ M
Sbjct: 67  GKYKMYDEMGM 77


>gi|413945504|gb|AFW78153.1| hypothetical protein ZEAMMB73_905897 [Zea mays]
          Length = 402

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 139/322 (43%), Gaps = 17/322 (5%)

Query: 186 KIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           + G F EA     ++   + +P        L+ AY +   +DEI + ++ +         
Sbjct: 79  EAGDFAEAWSLWAQLLHSSAAPCLPAVAPRLLPAYARLGRFDEILLAVRELSARDRGAAR 138

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
             Y L +     AG L RME     M    + + S+T  A + AY   G + +ME  Y+R
Sbjct: 139 TLYPLAVSCLGAAGELARMEDAVLEMGRLGLRVDSATGDAFVRAYAAAGTIPQMEAAYRR 198

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR---IGRTELVWCLRLLSHACL 361
              S   +    +R +A  YI    + RL     D   R   +G   L+W L LLS A  
Sbjct: 199 HRKSGLLITRGAIRAVASAYISRQKYYRLGAFAADAGLRRRDVG--NLLWNLYLLSSAAN 256

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
              + +     EM +A  R ++TT NI   A+ KM  F  L +    +    V PD+VT 
Sbjct: 257 FKMKSLQRAFLEMVAAGFRPDLTTFNIRAAAFSKMCMFWDLHLSADHMHRDGVAPDLVTH 316

Query: 422 GILYDA---RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
           G   DA   RR+  + T A +   R+    K V + TDP+V   +GKG F    E +  +
Sbjct: 317 GCFVDAYLERRLARNLTFAFD---RLDGDAKPV-VATDPIVFEAFGKGGFHASSEVLLET 372

Query: 479 LEPYSREKKRWTYQNLIDLVIK 500
               +  K RWTY  L+ + ++
Sbjct: 373 ----AGGKGRWTYYKLLGVYLR 390


>gi|297815394|ref|XP_002875580.1| pentatricopeptide repeat protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321418|gb|EFH51839.1| pentatricopeptide repeat protein [Arabidopsis lyrata subsp. lyrata]
          Length = 419

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 174/391 (44%), Gaps = 37/391 (9%)

Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           K I++S+++   S+KI        +  L +  L + A   F + +   L P+     ++ 
Sbjct: 34  KLIKESKLSRDFSRKIQIVDYAPLVQTLSQRRLPDVAHEIFIQTKSVNLLPNYRTLCALT 93

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             +++ G    A +  + +   +  P       L+ AY +   +DE+    K +      
Sbjct: 94  LCFAENGFVLRARMIWDGILNSSFVPDVFVVSKLMSAYEQVGCFDEVAKITKDVAARHSK 153

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              + Y++ I  F   G L+ MEG  + M  K + L S+T  AI+  +  FG LDK+E+ 
Sbjct: 154 LLPVVYSVAISCFGKNGQLELMEGVIEEMDLKGISLDSATANAIVRYFSFFGTLDKLEQA 213

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
           Y RL      ++E+ +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+
Sbjct: 214 YGRLKKFGIVIEEEEIRAVLLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 271

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A     + +      M  A    ++TT NI  LA+ +M  F  + + L  +   ++ PD+
Sbjct: 272 AADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDIHLTLEHMRRLNIVPDL 331

Query: 419 VTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFL 469
           VT G + DA   +R+           + + F++  + ++      TDPL   V GKG F 
Sbjct: 332 VTFGCVVDAYMDKRLA----------RNLEFVYNQMNLDDSPVVLTDPLAFEVLGKGDFH 381

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
              E V     P    +K WTY+ LI + +K
Sbjct: 382 LSSEAVL-EFSP----RKNWTYRKLIGVYLK 407


>gi|14190373|gb|AAK55667.1|AF378864_1 AT3g42630/T12K4_80 [Arabidopsis thaliana]
 gi|16323278|gb|AAL15373.1| AT3g42630/T12K4_80 [Arabidopsis thaliana]
          Length = 327

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 29/306 (9%)

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P       LI AY ++  +DE+    K +         +  +L I  F   G L+ MEG 
Sbjct: 27  PDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFGKNGQLELMEGV 86

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            + M +K + L + T   I+  Y  FG LDKMEK Y R+      ++E+ +R +   Y+K
Sbjct: 87  IEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLK 146

Query: 327 NYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
              F RL +   D+   +GR  L   +W   LLS+A     + +      M  A    ++
Sbjct: 147 QRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDL 204

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEM 440
           TT NI  LA+ +M  F  L + L  +   ++ PD+VT G + DA   +R+          
Sbjct: 205 TTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLA--------- 255

Query: 441 WKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
            + + F++  + ++      TDPL   V GKG F    E V     P    +K WTY+ L
Sbjct: 256 -RNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVL-EFSP----RKNWTYRKL 309

Query: 495 IDLVIK 500
           I + +K
Sbjct: 310 IGVYLK 315


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 145/328 (44%), Gaps = 21/328 (6%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAF 162
           H +A +  LK +++         M++ ++K  +  N       +  LC+ G  +EA   F
Sbjct: 343 HGYATLGRLKEAAK---------MFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFF 393

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M     KP +  Y +++HGY+  G F + +   N MK   ++     +  LI AY K 
Sbjct: 394 DSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKR 453

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
            M D+  +    M+  G SPD +TY+ +I  F+  G L      +  M+ + +   ++  
Sbjct: 454 GMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVY 513

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD--DL 340
            +I+  +   G L K ++    ++N   P + D+V   + V        R+ D  D  DL
Sbjct: 514 SSIIQGFCMHGGLVKAKELVSEMINKGIP-RPDIVF-FSSVINSLCKDGRVMDAHDIFDL 571

Query: 341 ASRIG-RTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKM 396
           A+ IG R  ++    L+   CL+    +D    ++  ME   V  ++ T N +L  Y K 
Sbjct: 572 ATDIGERPGVITFNSLIDGYCLVGK--MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKN 629

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                   L  E+  + VKP+ VT GI+
Sbjct: 630 GRINDGLTLFREMQRKGVKPNTVTYGIM 657



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 13/288 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N  +   ++  LC+  + + A+   Q M  +G A  P +  Y+++IHG+   G+  +A  
Sbjct: 227 NAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACS 286

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM    + P   TY+ +I A  K +  D+ ++ L+ M  DG  PD +TY+ +I  +A
Sbjct: 287 LFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYA 346

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK     ++ M  + +     T  + L +    G   +  +F+  +  +    K D
Sbjct: 347 TLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSM--TAKGHKPD 404

Query: 316 LVR--KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDS--- 369
           +     L   Y     F+ +  L + + S  G         +L HA   + RG +D    
Sbjct: 405 IFSYCTLLHGYASEGCFADMIGLFNSMKSN-GIAANCHVFTILIHA--YAKRGMVDDAML 461

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           +  EM+   V  +V T + ++  + +M          +++  R ++P+
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPN 509



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K I +  I  F+S  +I  LC++G + +A   F        +P +  +NS+I GY  +GK
Sbjct: 539 KGIPRPDIVFFSS--VINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGK 596

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            ++A   L+ M+ + + P   TY+ L+  Y K    ++     + M+  G  P+ +TY +
Sbjct: 597 MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 250 LIQEFACAG 258
           ++     AG
Sbjct: 657 MLAGLFRAG 665



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 2/150 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G LC     +EA+  FQ++    +K S+ I N++I+   K+ +  EA      +    
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASG 751

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  +I    K    ++ +     M+  G  P     N +I+     G + +  
Sbjct: 752 LLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAK-A 810

Query: 265 GTYKSML-TKRMHLRSSTMVAILDAYMNFG 293
           G Y S +  KR+ L +ST   +L  +   G
Sbjct: 811 GNYLSKVDGKRILLEASTTSLMLSLFSRKG 840


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 137/326 (42%), Gaps = 40/326 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +IG L  EG +E A   F+EM+   L+P +  YNS+I GY K+G    A+    E
Sbjct: 252 FTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEE 311

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK+    P   TY+ LI  + K++   +    L  MK  G  P+ +TY+ LI  F  AG+
Sbjct: 312 MKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGM 371

Query: 260 ---------------LKRMEGTYKSMLTKR--------------------MHLRSSTMVA 284
                          L+  E TY S++                       ++L   T  A
Sbjct: 372 LLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTA 431

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LD     G + + E+ +  LL +   L + +   L   YIK  M  +  D+ +++  + 
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKN 491

Query: 345 GRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
            + +L+     +   C      I+   +V+REM    +  N      ++ AY K+     
Sbjct: 492 LKPDLLLYGTKIWGLC--RQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTE 549

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA 427
              LL E+    +K  +VT G+L D 
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDG 575



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 112/275 (40%), Gaps = 19/275 (6%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  F++M    L PS+  YN +I   ++ G    A     EMK   L P   TY+ LI 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKR 274
            YGK  M        + MK  GC PD ITYN LI    C    +R+   ++    M  + 
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLIN---CFCKFERIPQAFEYLHGMKQRG 351

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     T   ++DA+   GML +  KF+  ++       E     L +   K      + 
Sbjct: 352 LQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCK------IG 405

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-----AKVRW--NVTTAN 387
           DL +         +    L ++++  LL     D  +RE E       K  W  N     
Sbjct: 406 DLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYT 465

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
            +   Y+K K  +    +L E+  +++KPD++  G
Sbjct: 466 SLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYG 500



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 4/179 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE---FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +++ + +  D+ + + K  +         KI G LC +  +E+++   +EM    L  + 
Sbjct: 473 KAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG-LCRQNEIEDSMAVIREMMDCGLTANS 531

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            IY ++I  Y K+GK  EA+  L EM+++ +     TY  LI    K  +  +       
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M  +G  P+ + Y  LI        L+  +  +  ML K +        +++D  M  G
Sbjct: 592 MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHG 650



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           +ME+A+   +EM    LKP L +Y + I G  +  +  +++  + EM +  L+  S  Y 
Sbjct: 476 MMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYT 535

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI AY K     E    L+ M+  G     +TY +LI      GL+++    +  M   
Sbjct: 536 TLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRN 595

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            +        A++D       L++ +  +  +L+
Sbjct: 596 GLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLD 629



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   +EEA   F EM    + P   +Y S+I G  K G   EAL   N M E+ 
Sbjct: 607 LIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIG 666

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +      Y  LI  + +Y         L  M   G  PD +    L++++
Sbjct: 667 MELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKY 716



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 37/210 (17%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +IPQ F+    +++  +  N      +I   C+ G++ EA + F +M    L+P+   Y 
Sbjct: 336 RIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYT 395

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQ----------------- 217
           S+I    KIG  NEA    +EM++  ++    TY    DGL +                 
Sbjct: 396 SLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKA 455

Query: 218 --------------AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
                          Y K KM ++    L+ M      PD + Y   I        ++  
Sbjct: 456 GWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDS 515

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
               + M+   +   S     ++DAY   G
Sbjct: 516 MAVIREMMDCGLTANSYIYTTLIDAYFKVG 545



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 2/169 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LCE+G M EA   F  +       + +IY S+ HGY K     +A+  L EM + NL P 
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y   I    +    ++    ++ M   G + +   Y  LI  +   G         +
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQ 555

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            M    + +   T   ++D     G++ +  +++  +  +R  L+ +++
Sbjct: 556 EMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM--TRNGLQPNIM 602


>gi|414869523|tpg|DAA48080.1| TPA: hypothetical protein ZEAMMB73_542549 [Zea mays]
          Length = 394

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 126/292 (43%), Gaps = 16/292 (5%)

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ AY +   +DEI   ++ +           Y L +     AG L RME     M    
Sbjct: 101 LLPAYARLGRFDEILHAVRELSARDRGAARALYPLAVSCLGAAGELARMEDAVLEMGRLG 160

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           + + S+T  A + AY   G + +ME  Y+R   S   +    +R +A  YI    + RL 
Sbjct: 161 LRVDSATGDAFVRAYAAAGTIPQMEAAYRRHRKSGLLITRGAIRAVASAYISRQKYYRLG 220

Query: 335 DLGDDLASR---IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
               D   R   +G   L+W L LLS A     + +     EM +A  R ++TT NI   
Sbjct: 221 AFAADAGLRRRDVG--NLLWNLYLLSFAANFKMKSLQRAFLEMVAAGFRPDLTTFNIRTA 278

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWKRIGFLF 448
           A+ KM  F  L +    +    V PD+VT G   DA   RR+  + T A +     G   
Sbjct: 279 AFSKMCMFWDLHLSADHMRRDGVAPDLVTHGCFVDAYLERRLARNLTFAFDRLDGDG--- 335

Query: 449 KTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
               + TDP+V   +GKG F    E +  +    +  K+RWTY  L+ + ++
Sbjct: 336 -EPVVATDPIVFEAFGKGGFHASSEVLLET----AGGKRRWTYYKLLGVYLR 382


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  +EA   F  M     KP +  Y +++HGY+  G F + +   N MK   ++  
Sbjct: 380 LCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAAD 439

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              ++ LI AY K  M D+  +    M+  G SPD +TY+ +I  F+  G L      + 
Sbjct: 440 CRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFN 499

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M+ + +   ++   +I+  +   G L K ++    ++N   P + D+V    +     K
Sbjct: 500 QMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIP-RPDIVFFNSVINSLCK 558

Query: 327 NYMFSRLDDLGD--DLASRIG-RTELVWCLRLLSHACLLSHRGID---SVVREMESAKVR 380
           +    R+ D  D  DL + IG R +++    L+   CL+    +D    ++  ME   V 
Sbjct: 559 D---GRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK--MDKAFKILDAMEVVGVE 613

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ T + +L  Y K         L  E+  + VKP+ VT GI+
Sbjct: 614 TDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIM 657



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 38/293 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   I+  LC+  + + A+  FQ M  EG A  P++  YN++IHG+ K G+  +A  
Sbjct: 227 NVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACS 286

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM    + P   TY+ +I A  K +  D+ ++ L+ M  +G  PD +TYN +I  +A
Sbjct: 287 LFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYA 346

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK     ++ M ++ +       + I ++++                   +  K  
Sbjct: 347 TLGRLKEAAKMFRKMKSRGL----IPNIVICNSFLA------------------SLCKHG 384

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREM 374
             ++ AE++             D + ++  + ++V +C  L  +A       +  +   M
Sbjct: 385 RSKEAAEIF-------------DSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSM 431

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +S  +  +    NI++ AY K        ++ +E+  + V PD+VT   +  A
Sbjct: 432 KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 107/296 (36%), Gaps = 46/296 (15%)

Query: 45  ISCCCLSSAP-------------SLDYHSTKHTTLL---VESYHEHQALNALIQRLNKKV 88
           + CCC +  P              L  H    +TLL     +    +A+N L+ R+++  
Sbjct: 164 MDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELG 223

Query: 89  SCP------------------------LQILQHDGDWTKDHFWA----VIRFLKNSSRSR 120
             P                         Q++  +G     +  A    +  F K     +
Sbjct: 224 CVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGK 283

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
                 +M +   K  +  +N   II  LC+   M++A    ++M     +P    YN +
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYN--LIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCM 341

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           IHGY+ +G+  EA     +MK   L P     +  + +  K+    E       M   G 
Sbjct: 342 IHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGH 401

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            PD ++Y  L+  +A  G    M G + SM +  +         ++ AY   GM+D
Sbjct: 402 KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVD 457



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K I +  I  FNS  +I  LC++G + +A   F  +     +P +  + S+I GY  +GK
Sbjct: 539 KGIPRPDIVFFNS--VINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            ++A   L+ M+ + +     TY  L+  Y K    ++     + M+  G  P+ +TY +
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 250 LIQEFACAG 258
           ++     AG
Sbjct: 657 MLAGLFRAG 665



 Score = 41.6 bits (96), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 62/149 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G LC     +EA+  FQ++    +K S+ I N++I+   K+ +  EA      +    
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASG 751

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  +I    K    ++ +     M+  G  P     N +I+     G + +  
Sbjct: 752 LLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAG 811

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                +  KR+ L +ST   +L  +   G
Sbjct: 812 NYLSKVDGKRILLEASTTSLMLSLFSRKG 840


>gi|449470370|ref|XP_004152890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g42630-like [Cucumis sativus]
 gi|449507537|ref|XP_004163059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g42630-like [Cucumis sativus]
          Length = 388

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 171/388 (44%), Gaps = 38/388 (9%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           NI  S++ +  S++ + +L +E  +E       + EGF L  S    ++I+  Y   G  
Sbjct: 20  NINNSQVIKKLSRRRMPILAKEIFLE------LKSEGFPLNNS--TLSTIMVHYIDDGSP 71

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +A     EM      P       L  AYGK   +D I   L  +KL         Y+L 
Sbjct: 72  LQAQAMWEEMLNSCFEPSVQVISKLFNAYGKMGHFDYITKVLDQVKLRYSHLLPEAYSLA 131

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F     L+ ME T + M++    + S+T  + +  Y  FG L +ME  Y RL  SR 
Sbjct: 132 ISCFGKHKQLELMESTLREMVSSGFTVNSATGNSFIIYYSMFGSLVEMETAYGRLKRSRF 191

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
            +++  +  +A  YI+   F RL +   D+   +GR  +   L  L      ++  + S+
Sbjct: 192 LIEKKGIMAMAFAYIRKRKFYRLGEFLRDVG--LGRKNVGNLLWNLLLLSYAANFKMKSL 249

Query: 371 VRE---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            RE   M  A    ++TT NI  LA+ +M     L + L  +   +++PD+VT G + DA
Sbjct: 250 QREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDA 309

Query: 428 ---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCEEVYSS 478
              RR+G          + + F+   +  +      TD  V    GKG F     E +  
Sbjct: 310 YVDRRLG----------RNLEFILSKMNPDQPPVSLTDSFVFEALGKGDF-HMSSEAFMQ 358

Query: 479 LEPYSREKKRWTYQNLIDLVI-KHNGKN 505
                R++K+WTY+ LI L + KH+ +N
Sbjct: 359 F----RKQKKWTYRELISLYLKKHHRRN 382


>gi|397136424|gb|AFO11720.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136430|gb|AFO11723.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136432|gb|AFO11724.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136434|gb|AFO11725.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136438|gb|AFO11727.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136442|gb|AFO11729.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136444|gb|AFO11730.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136448|gb|AFO11732.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136450|gb|AFO11733.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136454|gb|AFO11735.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136456|gb|AFO11736.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136462|gb|AFO11739.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136464|gb|AFO11740.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
          Length = 77

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA+VYI N MFSRLDDLG  ++ SR  R+EL WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLAKVYIDNLMFSRLDDLGRGISYSRTRRSELAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANIIL 390
             AKV WN T ANI+L
Sbjct: 62  TEAKVTWNTTFANIVL 77


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 150/308 (48%), Gaps = 15/308 (4%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEA 158
           W K+ F A+I   K+      + +   +   +EK  I  N      ++   C+   +EEA
Sbjct: 317 WGKEAFGALI---KSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEA 373

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
              F EM+   +KP+   +N +++ YS+  +       L EMK+  L P +++Y  LI A
Sbjct: 374 EGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISA 433

Query: 219 YGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           YG+ K   ++  D  LKM K+ G  P   +Y  +I  ++ +G  ++    +++M+ + + 
Sbjct: 434 YGRQKKMSDMAADAFLKMKKV-GIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIK 492

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
               T   +LDA+   G  + + K +K +++ +    +     L + + K  +F    D+
Sbjct: 493 PSIETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQGLFMEARDV 552

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLA 392
             +   +IG    V    +L +A   +  G+DS    +++EME+ ++R +  T + ++ A
Sbjct: 553 ISEFG-KIGLQPTVMTYNMLINA--YARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYA 609

Query: 393 YLKMKDFK 400
           +++++DFK
Sbjct: 610 FVRVRDFK 617



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 55/318 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIGM       ++A + F++M    ++   E + ++I  +   G  +EAL+  +EM++  
Sbjct: 290 IIGMRKLGHSAKDAWQFFEKMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKG 349

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +S  +  Y+ L+ AY K    +E +     MK  G  P  +T+N+L+  ++     K +E
Sbjct: 350 ISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVE 409

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY--------MNFGMLDKMEKF--------YKRLLNS 308
                M    +   +++   ++ AY        M      KM+K         Y  ++++
Sbjct: 410 SLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHA 469

Query: 309 RT---------PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLL 356
            +          + E+++R+  +  I+ Y  + LD        R+G TE    +W L   
Sbjct: 470 YSVSGWHEKAYAVFENMIREGIKPSIETYT-TLLDAF-----RRVGDTETLMKIWKL--- 520

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
                            M S KV+    T NI++  + K   F   R ++SE     ++P
Sbjct: 521 -----------------MMSEKVKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQP 563

Query: 417 DIVTIGILYDA-RRIGFD 433
            ++T  +L +A  R G D
Sbjct: 564 TVMTYNMLINAYARGGLD 581



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A   F+ M    +KPS+E Y +++  + ++G     +     M    +     T+
Sbjct: 474 GWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTF 533

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  + K  ++ E    +      G  P  +TYN+LI  +A  GL   +    K M  
Sbjct: 534 NILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEA 593

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
            R+   S T   ++ A++      +   ++K ++ S   +     RKL  +
Sbjct: 594 LRLRPDSITYSTVIYAFVRVRDFKRAFFYHKEMVKSGYVMDISSYRKLRAI 644


>gi|326510199|dbj|BAJ87316.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326524816|dbj|BAK04344.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 418

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
           Y +   YDE+ +  + +     +     Y L +     AG L  ME   + M    + + 
Sbjct: 129 YARAGRYDEVLLAARELSARDPAAARDLYPLAVSCLGAAGELALMEDAVQEMARAGLRVD 188

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           S+T  A +  Y  FG + +ME    RL  S   +  D +R +A  YI +  + +L +   
Sbjct: 189 SATGNAFVRHYAAFGTVPEMEAAVGRLKKSGLLISVDAIRAVASSYIAHRKYYKLGEFVR 248

Query: 339 DLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            +   R     ++W L LLS A     + +     EM +A  R ++TT NI   A+ KM 
Sbjct: 249 GVGLGRRNAGNMLWNLYLLSFAANFKMKSLQRAFLEMTAAGYRPDLTTFNIRAAAFSKMC 308

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVE-- 452
            F  L +    +    V PD+VT G   DA   RR+           + I F F+ ++  
Sbjct: 309 MFWDLHLTAEHMRRDGVAPDLVTHGCFVDAYMERRLA----------RNISFAFRRLDGA 358

Query: 453 ----INTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
               + TD +V   +GKG F    E +  +    +  K+RWTY +L+ + ++
Sbjct: 359 GEPVVATDGVVFEAFGKGGFHATSEALLEA----AGGKRRWTYYDLLGVYLR 406


>gi|397136436|gb|AFO11726.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
          Length = 77

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA+VYI N MFSRLDDLG  ++ SR  R+EL WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLAKVYIDNLMFSRLDDLGRGISYSRTRRSELAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANII 389
             AKV WN T ANI+
Sbjct: 62  TEAKVTWNTTFANIV 76


>gi|397136422|gb|AFO11719.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136426|gb|AFO11721.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136428|gb|AFO11722.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136440|gb|AFO11728.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136446|gb|AFO11731.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136452|gb|AFO11734.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136458|gb|AFO11737.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136460|gb|AFO11738.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136466|gb|AFO11741.1| At4g14190-like protein, partial [Capsella rubella]
 gi|397136468|gb|AFO11742.1| At4g14190-like protein, partial [Capsella rubella]
 gi|397136470|gb|AFO11743.1| At4g14190-like protein, partial [Capsella rubella]
 gi|397136472|gb|AFO11744.1| At4g14190-like protein, partial [Capsella rubella]
 gi|397136474|gb|AFO11745.1| At4g14190-like protein, partial [Capsella rubella]
          Length = 77

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA+VYI N MFSRLDDLG  ++ SR  R++L WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLAKVYIDNLMFSRLDDLGRGISYSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANIIL 390
             AKV WN T ANI+L
Sbjct: 62  TEAKVTWNTTFANIVL 77


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 38/294 (12%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +K   + F    +I  +C++G +EEA + F+EM    L+PS  IYN++I G+   G  + 
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  + +EM +  +SP   TY+ LI A    +  DE +  +K ++  G SPD ITYN+LI 
Sbjct: 345 ASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404

Query: 253 EFA-CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            +  CA                             +A   F + D+M      L +   P
Sbjct: 405 GYCRCA-----------------------------NAKKAFLLHDEM------LASGIKP 429

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSV 370
            K+     L  +  KN M    DDL   + S     +++    L+   C  S+ +G   +
Sbjct: 430 TKKTYTSLLHVLSKKNRM-KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFEL 488

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +++M+  KV  +  T N I+  + +    +  R L  E+  R +KPD ++   L
Sbjct: 489 LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ K++++ ++  +E     I+   C EG +EEA   F EM+   +KP    +N++I 
Sbjct: 485 AFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GYS+ G   +A    NEM +   +P   TY+ L+Q   K +  D  +  LK M   G +P
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 243 DHITYNLLIQEFA 255
           D  TY  LI+  A
Sbjct: 605 DDTTYFTLIEGIA 617



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 38/263 (14%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A   + EM    +K S+  +N +I+   K GK  +A  F+  M+   + P   TY+ +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  Y      +  D  L  MK     PD  TY  LI      G L+     ++ M+ K +
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
              +     ++D + N G LD    +           K+++++K                
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAY-----------KDEMLKK---------------- 355

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAY 393
                    G +  +     L HA  +  R  ++  +++E++   +  +  T NI++  Y
Sbjct: 356 ---------GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGY 406

Query: 394 LKMKDFKHLRVLLSELPTRHVKP 416
            +  + K   +L  E+    +KP
Sbjct: 407 CRCANAKKAFLLHDEMLASGIKP 429



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 124 QVFDMWK--NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           ++FD  K   I+   I+ FN+  +I      G +++A R   EM      P++  YN+++
Sbjct: 522 ELFDEMKRRGIKPDHIS-FNT--LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALV 578

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            G  K  + + A   L EM    ++P   TY  LI+   K  + DE
Sbjct: 579 QGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624


>gi|397136374|gb|AFO11695.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136376|gb|AFO11696.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136378|gb|AFO11697.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136380|gb|AFO11698.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136382|gb|AFO11699.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136384|gb|AFO11700.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136386|gb|AFO11701.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136388|gb|AFO11702.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136390|gb|AFO11703.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136392|gb|AFO11704.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136396|gb|AFO11706.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136398|gb|AFO11707.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136402|gb|AFO11709.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136404|gb|AFO11710.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136406|gb|AFO11711.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136408|gb|AFO11712.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136410|gb|AFO11713.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136412|gb|AFO11714.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136414|gb|AFO11715.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136416|gb|AFO11716.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136418|gb|AFO11717.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
 gi|397136420|gb|AFO11718.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
          Length = 77

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA VYI N MFSRLDDLG  ++ SR  R++L WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLANVYIDNLMFSRLDDLGRGISYSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANIIL 390
             AKV WN T ANI+L
Sbjct: 62  TEAKVTWNTTFANIVL 77


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 42/296 (14%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +K   + F    +I  +C++G +EEA + F+EM    L+PS  IYN++I G+   G  + 
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  + +EM +  +SP   TY+ LI A    +  DE +  +K ++  G SPD ITYN+LI 
Sbjct: 345 ASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            +      K+    +  ML   +     T  ++L                  +L+ +  +
Sbjct: 405 GYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL-----------------HVLSKKNRM 447

Query: 313 KE--DLVRKLAE--VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
           KE  DL +K+    V     MF+ L D                      H    + +G  
Sbjct: 448 KEADDLFKKITSEGVLPDAIMFNALID---------------------GHCSNSNVKGAF 486

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++++M+  KV  +  T N I+  + +    +  R L  E+  R +KPD ++   L
Sbjct: 487 ELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ K++++ ++  +E     I+   C EG +EEA   F EM+   +KP    +N++I 
Sbjct: 485 AFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GYS+ G   +A    NEM +   +P   TY+ L+Q   K +  D  +  LK M   G +P
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 243 DHITYNLLIQEFA 255
           D  TY  LI+  A
Sbjct: 605 DDTTYFTLIEGIA 617



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 38/263 (14%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A   + EM    +K S+  +N +I+   K GK  +A  F+  M+   + P   TY+ +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  Y      +  D  L  MK     PD  TY  LI      G L+     ++ M+ K +
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
              +     ++D + N G LD    +           K+++++K                
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAY-----------KDEMLKK---------------- 355

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAY 393
                    G +  +     L HA  +  R  ++  +++E++   +  +  T NI++  Y
Sbjct: 356 ---------GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGY 406

Query: 394 LKMKDFKHLRVLLSELPTRHVKP 416
            +  + K   +L  E+    +KP
Sbjct: 407 CRCANAKKAFLLHDEMLASGIKP 429



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 124 QVFDMWK--NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           ++FD  K   I+   I+ FN+  +I      G +++A R   EM      P++  YN+++
Sbjct: 522 ELFDEMKRRGIKPDHIS-FNT--LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALV 578

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            G  K  + + A   L EM    ++P   TY  LI+   K  + DE
Sbjct: 579 QGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 162/411 (39%), Gaps = 60/411 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+EG +E + R F +M    L P +  YNS+I GY K+G   E     NE
Sbjct: 290 FTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNE 349

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK++   P   TY+GLI  Y K++           MK +G  P+ +TY+ LI  F   G+
Sbjct: 350 MKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGM 409

Query: 260 LKRM---------------EGTYKS--------------------MLTKRMHLRSSTMVA 284
           ++                 E TY S                    ML   + L   T  A
Sbjct: 410 MQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTA 469

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LD     G + + E+ ++ +L       + +   L   YIK     R++D    L    
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA---ERMEDAMKILKQMT 526

Query: 345 G---RTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKD 398
               + +L+    ++   C  S R ++    ++ EM+S  +  N   +  I+ AY K   
Sbjct: 527 ECNIKPDLILYGSIIWGHC--SQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 584

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
                    E+    V+  IVT  +L D    G    G +E+   + +  + + +   P 
Sbjct: 585 SSDALNFFQEMQDVGVEATIVTYCVLID----GLCKAGIVEL--AVDYFCRMLSLGLQPN 638

Query: 459 VLAVYG-------KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           V AVY        K + +   ++++  ++          +  LID  +KH 
Sbjct: 639 V-AVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 688



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 127/311 (40%), Gaps = 7/311 (2%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           + F +M G  + PS+  YN +I    K G    +     +M+EM LSP   TY+ LI  Y
Sbjct: 275 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 334

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           GK    +E+      MK  GC PD ITYN LI  +     + R    +  M    +    
Sbjct: 335 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 394

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            T   ++DA+   GM+    K +  +  +     E     L +   K    +    L +D
Sbjct: 395 VTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 454

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMK 397
           +     +  +V    LL   C  + R I++  V R M    +  N      ++  Y+K +
Sbjct: 455 MLQAGVKLNIVTYTALLDGLC-KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAE 513

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
             +    +L ++   ++KPD+    ILY +   G      LE  K I    K+  I+ +P
Sbjct: 514 RMEDAMKILKQMTECNIKPDL----ILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 569

Query: 458 LVLAVYGKGHF 468
           ++       +F
Sbjct: 570 VISTTIIDAYF 580



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      ++  LC+ G M EA   F+ M    + P+ ++Y +++HGY K  +  +A+ 
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M E N+ P    Y  +I  +   +  +E  + L+ MK  G S + +    +I  + 
Sbjct: 521 ILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYF 580

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            AG        ++ M    +     T   ++D     G+++    ++ R+L+        
Sbjct: 581 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVA 640

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           +   L +   KN        L D++  R
Sbjct: 641 VYTSLIDGLCKNNCIESAKKLFDEMQCR 668



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 5/190 (2%)

Query: 122 IPQVFDM-W--KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +  +FDM W  +NI  S    F+   +  +  E GL+EEA   F  M  F   P     N
Sbjct: 201 VCNIFDMLWSTRNICVSGSGVFDV--LFSVFVELGLLEEANECFSRMRNFRTLPKARSCN 258

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            ++H  SK G       F N+M    ++P   TY+ +I    K    +        M+  
Sbjct: 259 FLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREM 318

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G SPD +TYN LI  +   G L+ +   +  M          T   +++ Y  F  + + 
Sbjct: 319 GLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRA 378

Query: 299 EKFYKRLLNS 308
            +++  + N+
Sbjct: 379 FEYFSEMKNN 388



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 101/281 (35%), Gaps = 57/281 (20%)

Query: 67  LVESYHEHQALNALIQRLN--KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQ 124
           L++ Y +  +L  +    N  K V C   I+ ++G             +    +  ++P+
Sbjct: 330 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG------------LINCYCKFEKMPR 377

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F+ +  ++ + +  N      +I   C+EG+M+ A++ F +M    L P+   Y S+I 
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K G   EA   LN+M +  +     TY  L+    K     E +   + M  DG SP
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYK---------------------------------- 268
           +   Y  L+  +  A   +RME   K                                  
Sbjct: 498 NQQVYTALVHGYIKA---ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 269 ----SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                M ++ +         I+DAY   G       F++ +
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 595



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G++E AV  F  M    L+P++ +Y S+I G  K      A    +EM+   
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRG 669

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P    +  LI    K+    E  + +  M       D   Y  L+  F+  G L +  
Sbjct: 670 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  M+ K +       + +L  Y   G LD+
Sbjct: 730 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 762



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 68/189 (35%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N   S  II    + G   +A+  FQEM+   ++ ++  Y  +I G  K G    A+ + 
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M  + L P    Y  LI    K    +        M+  G +PD   +  LI      
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 687

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+        M    +        +++  +   G L +  KF+  ++      +E L 
Sbjct: 688 GNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLC 747

Query: 318 RKLAEVYIK 326
             L   Y K
Sbjct: 748 ICLLREYYK 756


>gi|397136394|gb|AFO11705.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
          Length = 77

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA VYI N MFSRLDDLG  ++ SR  R++L WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLAXVYIDNLMFSRLDDLGRGISYSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANIIL 390
             AKV WN T ANI+L
Sbjct: 62  TEAKVTWNTTFANIVL 77


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 142/321 (44%), Gaps = 16/321 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +EEA +   EME   L P +  YN++I+G  +  K +EA   L EM E  
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + T++ +++ Y K    D+    +  M+  G SPD +TYN LI  +  AG +    
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP---LKEDLVRKLA 321
            T   M  K M + S T+  IL          K+E+ YK L ++R     + E     L 
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRT---LCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 322 EVYIKNYMFSRLDDLGDDLASR--IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             Y K+    R   L D++  +  I  T    C+      C  + + I  +   +ES  +
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT--GA 437
             + TT N IL  Y +  D +      +++     KPD+ T  IL   R +  +G    A
Sbjct: 556 P-DETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL--RGLCMEGVLEKA 612

Query: 438 LEM---WKRIGFLFKTVEINT 455
           L++   W   G    TV  NT
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNT 633



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG LC+ G  E+A+    E+    L P    YN+I+HGY + G   +A  F N+M E +
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS 588

Query: 205 LSPQ-----------------------------------SDTYDGLIQAYGKYKMYDEID 229
             P                                    + TY+ LI +  K    D+  
Sbjct: 589 FKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAF 648

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             L  M+     PDH TYN +I     +G ++  E     ML K
Sbjct: 649 NLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEK 692



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+   R +++ + + +  +  K    I+E +   +I    ++G ++ A++ + EM+   
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + PS   YN II G  + GK  +A+  LNE+ E  L P   TY+ ++  Y +    ++  
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M  +   PD  T N+L++     G+L++    + + ++K   + + T   ++ + 
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSL 638

Query: 290 MNFGMLD 296
              G LD
Sbjct: 639 CKEGRLD 645



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%)

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
           AF +     + P++  +N +I+GY    KF +A+ FLN M + N SP + TY+ ++    
Sbjct: 195 AFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLC 254

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     +    L  MK  G  P+  TYN+L+  +   G LK      + M    +     
Sbjct: 255 KKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVW 314

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLN 307
           T   +++   N G +++  K    + N
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMEN 341



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N FN   +I   C E   ++AV     M  +   P    YN+I+    K G+  +A   
Sbjct: 208 VNTFNI--VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDL 265

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L +MK   L P  +TY+ L+  Y K     E    +++M  +   PD  TYN+LI     
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325

Query: 257 AGLLKRMEGTYK 268
            G   R+E  +K
Sbjct: 326 EG---RIEEAFK 334



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           ++F+ W +  K+ I+      +I  LC+EG +++A     EME   L P    YN+II  
Sbjct: 614 KLFNTWVSKGKA-IDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 184 YSKIGKFNEALLFLNEMKE 202
            +  G+  EA  F+++M E
Sbjct: 673 LTDSGRIREAEEFMSKMLE 691


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 146/365 (40%), Gaps = 53/365 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+EG +E + R F +M    L P +  YNS+I GY K+G   E     NE
Sbjct: 231 FTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNE 290

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK++   P   TY+GLI  Y K++           MK +G  P+ +TY+ LI  F   G+
Sbjct: 291 MKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGM 350

Query: 260 LKRM---------------EGTYKS--------------------MLTKRMHLRSSTMVA 284
           ++                 E TY S                    ML   + L   T  A
Sbjct: 351 MQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTA 410

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LD     G + + E+ ++ +L       + +   L   YIK     R++D    L    
Sbjct: 411 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA---ERMEDAMKILKQMT 467

Query: 345 G---RTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKD 398
               + +L+    ++   C  S R ++    ++ EM+S  +  N   +  I+ AY K   
Sbjct: 468 ECNIKPDLILYGSIIWGHC--SQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
                    E+    V+  IVT  +L D    G    G +E+   + +  + + +   P 
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLID----GLCEAGIVEL--AVDYFCRMLSLGLQPN 579

Query: 459 VLAVY 463
           V AVY
Sbjct: 580 V-AVY 583



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 7/309 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F +M G  + PS+  YN +I    K G    +     +M+EM LSP   TY+ LI  YGK
Sbjct: 218 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGK 277

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               +E+      MK  GC PD ITYN LI  +     + R    +  M    +     T
Sbjct: 278 VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVT 337

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++DA+   GM+    K    +  +     E     L +   K    +    L +D+ 
Sbjct: 338 YSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDML 397

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDF 399
               +  +V    LL   C  + R I++  V R M    +  N      ++  Y+K +  
Sbjct: 398 QAGVKLNIVTYTALLDGLC-KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERM 456

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
           +    +L ++   ++KPD+    ILY +   G      LE  K I    K+  I+ +P++
Sbjct: 457 EDAMKILKQMTECNIKPDL----ILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVI 512

Query: 460 LAVYGKGHF 468
                  +F
Sbjct: 513 STTIIDAYF 521



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 78/172 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      ++  LC+ G M EA   F+ M    + P+ ++Y +++HGY K  +  +A+ 
Sbjct: 402 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M E N+ P    Y  +I  +   +  +E  + L+ MK  G S + +    +I  + 
Sbjct: 462 ILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYF 521

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            AG        ++ M    +     T   ++D     G+++    ++ R+L+
Sbjct: 522 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLS 573



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 7/199 (3%)

Query: 122 IPQVFDM-W--KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +  +FDM W  +NI  S    F+   +  +  E GL+EEA   F  M  F   P     N
Sbjct: 142 VCNIFDMLWSTRNICVSGSGVFDV--LFSVFVELGLLEEANECFSRMRNFRTLPKARSCN 199

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            ++H  SK G       F N+M    ++P   TY+ +I    K    +        M+  
Sbjct: 200 FLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREM 259

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G SPD +TYN LI  +   G L+ +   +  M          T   +++ Y  F  + + 
Sbjct: 260 GLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRA 319

Query: 299 EKFYKRLLNSRTPLKEDLV 317
            +++  + N+   LK ++V
Sbjct: 320 FEYFSEMKNN--GLKPNVV 336



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 68/168 (40%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    +I   C+ G + EA +   +M    +K ++  Y +++ G  K G+  EA    
Sbjct: 369 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVF 428

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M +  +SP    Y  L+  Y K +  ++    LK M      PD I Y  +I      
Sbjct: 429 RSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQ 488

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             L+  +   + M ++ +         I+DAY   G       F++ +
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 536



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 63/153 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LCE G++E AV  F  M    L+P++ +Y S+I G         A    +EM+   
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRG 610

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P    +  LI    K+    E  + +  M       D   Y  L+  F+  G L +  
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  M+ K +       + +L  Y   G LD+
Sbjct: 671 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 703



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 67/189 (35%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N   S  II    + G   +A+  FQEM+   ++ ++  Y  +I G  + G    A+ + 
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYF 568

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M  + L P    Y  LI         +        M+  G +PD   +  LI      
Sbjct: 569 CRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 628

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+        M    +        +++  +   G L +  KF+  ++      +E L 
Sbjct: 629 GNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLC 688

Query: 318 RKLAEVYIK 326
             L   Y K
Sbjct: 689 ICLLREYYK 697


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 160/361 (44%), Gaps = 42/361 (11%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL+EEA+   QEME   +KP +  Y ++I G  +IGK + AL   +E
Sbjct: 329 YNS--LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSE 386

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M     SP   TY+ LI+ +G    + E+ +    ++  G  PD +T+N L+  F   GL
Sbjct: 387 MVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGL 446

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              + G +K M          T V+++ +Y   G+ D+  + YKR++ +           
Sbjct: 447 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGI--------- 497

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             ++   N + S L        +R GR    W                + +  EME    
Sbjct: 498 YPDISTYNAVLSAL--------ARGGR----WV-------------QAEKLFAEMEDRDC 532

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD--IVTIGILYDARRIGFDGT-G 436
           + +  + + +L AY   K    ++ L  ++  + ++P   +V   +L + +      T  
Sbjct: 533 KPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEK 592

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           A +  +R      +++IN    ++++YGK   ++  EEV + ++  S      TY +L+ 
Sbjct: 593 AFQELRRRRC---SLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMH 649

Query: 497 L 497
           +
Sbjct: 650 M 650



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 132/281 (46%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F++A+     M E  
Sbjct: 437 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAG 496

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   + + +     M+   C PD ++Y+ L+  +A A  L +M+
Sbjct: 497 IYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMK 556

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + +  +R+   +  +  ++        L + EK ++ L   R  L  +++  +  +Y
Sbjct: 557 ALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIY 616

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++++   +  + I  +   +   +  ++ L      ++++ E++S+ +R + 
Sbjct: 617 GKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDR 676

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+    VKPDIVT  I 
Sbjct: 677 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 717



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 167/385 (43%), Gaps = 44/385 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEM 203
           ++      G   +AV  F+ M    ++P+L  YN ++H YSK+   + E ++ ++ MKE 
Sbjct: 191 LVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDSMKED 250

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA------ 257
            +     TY+ LI    +  +Y E       MK  G  PD +T+N L+  +  A      
Sbjct: 251 GIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEA 310

Query: 258 -GLLKRME--GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G+LK+ME  G   S++T           +++ AY+  G+L++  +  K+ +  R  +K 
Sbjct: 311 IGVLKKMENAGCTPSVVTYN---------SLISAYVKDGLLEEALEL-KQEMEFRG-MKP 359

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV---WCLRLLSHACLLSHRGIDSVV 371
           D+V           + S LD +G   A+    +E+V       L ++  L+   G+    
Sbjct: 360 DVV-------TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKF 412

Query: 372 REM-------ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-IGI 423
            EM        SA    +V T N +L  + +      +  +  E+      P+  T + +
Sbjct: 413 TEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 472

Query: 424 LYDARRIG-FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPY 482
           +    R G FD   A+E++KR+       +I+T   VL+   +G      E++++ +E  
Sbjct: 473 ISSYSRCGLFD--QAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDR 530

Query: 483 SREKKRWTYQNLIDLVIKHNGKNLD 507
             +    +Y +L+      N K LD
Sbjct: 531 DCKPDELSYSSLLHAYA--NAKKLD 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 7/295 (2%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ +    +I      GL  EA + F EM+    +P    +NS++  Y K  +  EA+  
Sbjct: 254 LDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGV 313

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L +M+    +P   TY+ LI AY K  + +E     + M+  G  PD +TY  LI     
Sbjct: 314 LKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDR 373

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +     TY  M+         T  A++  +   G   +M   +  L ++      D+
Sbjct: 374 IGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAG--YVPDV 431

Query: 317 V--RKLAEVYIKNYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           V    L  V+ +N + S +  +  ++  A  I   +    L      C L  + ++ + +
Sbjct: 432 VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME-IYK 490

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            M  A +  +++T N +L A  +   +     L +E+  R  KPD ++   L  A
Sbjct: 491 RMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHA 545



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 6/205 (2%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVR 160
           H W V   +  +++   + +    ++ + + R    IN  N+  ++ +  +  ++++   
Sbjct: 570 HNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNA--MVSIYGKNKMVKKVEE 627

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
               M+  ++  S   YNS++H YS++G   +    L E+K   + P   +Y+ +I AYG
Sbjct: 628 VLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYG 687

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           +     E       MK  G  PD +TYN+ I+ +    + +      + ++ +       
Sbjct: 688 RKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNER 747

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRL 305
           T  +IL+ Y   G + + + F   L
Sbjct: 748 TYNSILEGYCRHGRMVEAKSFLSNL 772



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 116/284 (40%), Gaps = 11/284 (3%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-YDEIDM 230
           P    Y +++  +S+ G+F +A+     M +  + P   TY+ ++  Y K  + + E+ +
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            +  MK DG   D  TYN LI      GL +     +  M          T  ++LD Y 
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                ++     K++ N+           L   Y+K+ +     +L  ++  R  + ++V
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 351 WCLRLLSHACLLSHRG-IDSVV---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
               L+S    L   G ID+ +    EM       N+ T N ++  +     F  + ++ 
Sbjct: 363 TYTTLISG---LDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVF 419

Query: 407 SELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFL 447
            +L +    PD+VT   L   +    +  + +G  +  K+ G++
Sbjct: 420 DDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 463


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 21/358 (5%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV 159
           + K  + A++     S R ++  +V  +M  N     I  +NS  +I     +G+++EA+
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAM 369

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
               +M     KP +  Y +++ G+ + GK   A+    EM+     P   T++  I+ Y
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 220 GK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           G         K++DEI++C       G SPD +T+N L+  F   G+   + G +K M  
Sbjct: 430 GNRGKFTEMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
                   T   ++ AY   G  ++    Y+R+L++           +     +  M+ +
Sbjct: 483 AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542

Query: 333 LDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            + +  ++   R    EL +C  L ++A       + S+  E+ S  +         ++L
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVL 602

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGF 446
              K           SEL  R   PDI T+  +   Y  R++     G L+  K  GF
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 3/270 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A+  F+EM     KP++  +N+ I  Y   GKF E +   +E+    LSP   T+
Sbjct: 398 GKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTW 457

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  +G+  M  E+    K MK  G  P+  T+N LI  ++  G  ++    Y+ ML 
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +    ST   +L A    GM ++ EK    + + R    E     L   Y        
Sbjct: 518 AGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGL 577

Query: 333 LDDLGDDLASRI--GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           +  L +++ S +   R  L+  L L+   C L     +    E++      ++TT N ++
Sbjct: 578 MHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA-ERAFSELKERGFSPDITTLNSMV 636

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             Y + +       +L  +  R   P + T
Sbjct: 637 SIYGRRQMVAKANGVLDYMKERGFTPSMAT 666



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 8/276 (2%)

Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C+ G L +EA + F+EM+          YN+++  Y K  +  EA+  LNEM     SP 
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPS 348

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI AY +  M DE       M   G  PD  TY  L+  F  AG ++     ++
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M          T  A +  Y N G   +M K +  +  +   L  D+V    L  V+ +
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI--NVCGLSPDIVTWNTLLAVFGQ 466

Query: 327 NYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           N M S +  +  ++  A  +   E    L      C    + + +V R M  A V  +++
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM-TVYRRMLDAGVTPDLS 525

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           T N +L A  +   ++    +L+E+     KP+ +T
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/316 (17%), Positives = 137/316 (43%), Gaps = 2/316 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A I+   N  +  ++ ++FD   N+     +      ++ +  + G+  E    F+EM
Sbjct: 422 FNAFIKMYGNRGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P  E +N++I  YS+ G F +A+     M +  ++P   TY+ ++ A  +  M+
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++ +  L  M+   C P+ +TY  L+  +A    +  M    + + +  +  R+  +  +
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           +       +L + E+ +  L           +  +  +Y +  M ++ + + D +  R  
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660

Query: 346 RTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
              +     L+  H+        + ++RE+ +  ++ ++ + N ++ AY +    +    
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720

Query: 405 LLSELPTRHVKPDIVT 420
           + SE+    + PD++T
Sbjct: 721 IFSEMRNSGIVPDVIT 736



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 43/331 (12%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK------- 189
           ++ ++   +I      G   EAV  F++ME    KP+L  YN I++ + K+G        
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITS 265

Query: 190 -----------------------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
                                          EA     EMK    S    TY+ L+  YG
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     E    L  M L+G SP  +TYN LI  +A  G+L         M  K       
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +L  +   G ++     ++ + N+             ++Y     F+ +  + D++
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKM 396
                  ++V    LL+   +    G+DS    V +EM+ A       T N ++ AY + 
Sbjct: 446 NVCGLSPDIVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             F+    +   +    V PD+ T   +  A
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              PS+  YNS+++ +S+   F ++   L E+    + P   +Y+ +I AY +     + 
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 M+  G  PD ITYN  I  +A   + +   G  + M+        +T  +I+D 
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778

Query: 289 YMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAEVYIKNY 328
           Y      D+ + F + L  L+   P  EDL  +L E  +K +
Sbjct: 779 YCKLNRKDEAKLFVEDLRNLDPHAPKGEDL--RLLERIVKKW 818



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 46/319 (14%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           II    K G+ + A    N ++E   S    +Y  LI A+     Y E     K M+ DG
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 240 CSPDHITYNLLIQEFACAG--------LLKRMEG--------TYKSMLT--KRMHLRSS- 280
           C P  ITYN+++  F   G        L+++M+         TY +++T  KR  L    
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 281 -----------------TMVAILDAY-MNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKL 320
                            T  A+LD Y  +    + M+   + +LN  +P    +V    L
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP---SIVTYNSL 355

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKV 379
              Y ++ M     +L + +A +  + ++     LLS            S+  EM +A  
Sbjct: 356 ISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGC 415

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTG 436
           + N+ T N  +  Y     F  +  +  E+    + PDIVT   L   +    +  + +G
Sbjct: 416 KPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSG 475

Query: 437 ALEMWKRIGFLFKTVEINT 455
             +  KR GF+ +    NT
Sbjct: 476 VFKEMKRAGFVPERETFNT 494



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    M +A R F EM    + P +  YN+ I  Y+    F EA+  +  M +  
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-LDGCSP 242
             P  +TY+ ++  Y K    DE  + ++ ++ LD  +P
Sbjct: 765 CRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803


>gi|242082183|ref|XP_002445860.1| hypothetical protein SORBIDRAFT_07g027040 [Sorghum bicolor]
 gi|241942210|gb|EES15355.1| hypothetical protein SORBIDRAFT_07g027040 [Sorghum bicolor]
          Length = 335

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 24/296 (8%)

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ AY +   +DEI + ++ +           Y L +     AG L RME     M    
Sbjct: 42  LLPAYARLGRFDEILLAVRELSARDRGAARALYPLAVSCLGAAGELARMEDVVLEMGRLG 101

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           + + ++T  A + AY   G + +ME  Y+R   +   +    +R +A  YI    + RL 
Sbjct: 102 LRVDAATGDAFVRAYAAAGTIPQMEAAYRRHKKAGLLVTRGAIRAVASAYISQQKYYRLG 161

Query: 335 DLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
               D    R     L+W L LLS A     + +     EM +A  R ++TT NI   A+
Sbjct: 162 AFVADAGLRRRDAGNLLWNLYLLSFAANFKMKSLQRAFLEMVAAGFRPDLTTFNIRAAAF 221

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWKRIGFLFKT 450
            KM  F  L +    +    V PD+VT G   DA   RR+           + + F F  
Sbjct: 222 SKMCMFWDLHLSADHMRRDGVAPDLVTHGCFVDAYLERRLA----------RNLTFAFDR 271

Query: 451 VEIN------TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
           ++ N      TD +V   +GKG F    E +  +    +  K+RWTY  L+ + ++
Sbjct: 272 LDGNAEPVVATDAIVFEAFGKGGFHASSEVLLEA----TAGKRRWTYYKLLGVYLR 323


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 142/321 (44%), Gaps = 16/321 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +EEA +   EME   L P +  YN++I+G  +  K +EA   L EM E  
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + T++ +++ Y K    D+    +  M+  G SPD +TYN LI  +  AG +    
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP---LKEDLVRKLA 321
            T   M  K M + S T+  IL          K+E+ YK L ++R     + E     L 
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRT---LCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 322 EVYIKNYMFSRLDDLGDDLASR--IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             Y K+    R   L D++  +  I  T    C+      C  + + I  +   +ES  +
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG--TGA 437
             + TT N IL  Y +  D +      +++     KPD+ T  IL   R +  +G    A
Sbjct: 556 P-DETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL--RGLCMEGMLEKA 612

Query: 438 LEM---WKRIGFLFKTVEINT 455
           L++   W   G    TV  NT
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNT 633



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG LC+ G  E+A+    E+    L P    YN+I+HGY + G   +A  F N+M E +
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS 588

Query: 205 LSPQ-----------------------------------SDTYDGLIQAYGKYKMYDEID 229
             P                                    + TY+ LI +  K    D+  
Sbjct: 589 FKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAF 648

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             L  M+     PDH TYN +I     +G ++  E     ML K
Sbjct: 649 NLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEK 692



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+   R +++ + + +  +  K    I+E +   +I    ++G ++ A++ + EM+   
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + PS   YN II G  + GK  +A+  LNE+ E  L P   TY+ ++  Y +    ++  
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M  +   PD  T N+L++     G+L++    + + ++K   + + T   ++ + 
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSL 638

Query: 290 MNFGMLD 296
              G LD
Sbjct: 639 CKEGRLD 645



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%)

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
           AF +     + P++  +N +I+GY    KF +A+ FLN M + N SP + TY+ ++ A  
Sbjct: 195 AFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALC 254

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     +    L  MK  G  P+  TYN+L+  +   G LK      + M    +     
Sbjct: 255 KKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVW 314

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLN 307
           T   +++   N G +++  K    + N
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMEN 341



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N FN   +I   C E   ++AV     M  +   P    YN+I+    K G+  +A   
Sbjct: 208 VNTFNI--VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDL 265

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L +MK   L P  +TY+ L+  Y K     E    +++M  +   PD  TYN+LI     
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325

Query: 257 AGLLKRMEGTYK 268
            G   R+E  +K
Sbjct: 326 EG---RIEEAFK 334



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC EG++E+A++ F              YN++I    K G+ ++A   L+E
Sbjct: 594 FTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 200 MKEMNLSPQSDTYDGLIQA 218
           M+E  L P   TY+ +I A
Sbjct: 654 MEEKELGPDHYTYNAIITA 672



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           ++F+ W +  K+ I+      +I  LC+EG +++A     EME   L P    YN+II  
Sbjct: 614 KLFNTWVSKGKA-IDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 184 YSKIGKFNEALLFLNEMKEMNLSP 207
            +  G+  EA  F+++M E    P
Sbjct: 673 LTDSGRIREAEEFMSKMLEKGXLP 696


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 135/284 (47%), Gaps = 7/284 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F++A+     M E  
Sbjct: 436 LLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAG 495

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M    C PD ++Y+ L+  +A A  L +M+
Sbjct: 496 IYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMK 555

Query: 265 GTYKSMLTKRMHLRS---STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              + +  +R+   +    T+V + +   N   L + EK ++ L   R  L  +++  + 
Sbjct: 556 TLSEDIYAERIERHNWLVKTLVLVNNKVNN---LPETEKAFQELRRRRCSLDINVLNAMV 612

Query: 322 EVYIKNYMFSRLDD-LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
            +Y KN M  ++++ L   + + I  +   +   +  ++ L      +S++ E++S+ +R
Sbjct: 613 SIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMR 672

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +  + N ++ AY +    K    L SE+    VKPDIVT  I 
Sbjct: 673 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 716



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 2/169 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL+EEA+   QEME   +KP +  Y ++I G  ++GK + AL   +E
Sbjct: 328 YNS--LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSE 385

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M     SP   TY+ LI+ +G    + E+      ++  G  PD +T+N L+  F   GL
Sbjct: 386 MVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGL 445

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              + G +K M          T V+++ +Y   G+ D+  + YKR++ +
Sbjct: 446 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEA 494



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G ++ A+  + EM      P+L  YN++I  +   GKF E +   ++++   
Sbjct: 366 LISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAG 425

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ L+  +G+  +  E+    K MK  G  P+  TY  LI  ++  GL  +  
Sbjct: 426 YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAM 485

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             YK M+   ++   ST  A+L A    G  ++ EK +  +++      E     L   Y
Sbjct: 486 EIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY 545

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLL 356
                  ++  L +D+ A RI R    W ++ L
Sbjct: 546 ANAKKLDKMKTLSEDIYAERIERHN--WLVKTL 576



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 120/323 (37%), Gaps = 43/323 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI----------------- 187
           ++      G   +AV  FQ M    ++P+L  YN + H YSK+                 
Sbjct: 190 LVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKED 249

Query: 188 -------------------GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                              G   EA    +EMK     P   T++ L+  YGK + ++E 
Sbjct: 250 GIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEA 309

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              LK M+  GC+P  +TYN LI  +   GLL+      + M  + M     T   ++  
Sbjct: 310 IGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISG 369

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G +D     Y  ++ +           L +++     F+ +  + DDL S     +
Sbjct: 370 LDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPD 429

Query: 349 LVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           +V    LLS   +    G+DS    V +EM+ A       T   ++ +Y +   F     
Sbjct: 430 VVTWNTLLS---VFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 486

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           +   +    + PDI T   +  A
Sbjct: 487 IYKRMIEAGIYPDISTYNAVLSA 509



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 125/301 (41%), Gaps = 10/301 (3%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
            IE+ R   +    +I      GL  EA + F EM+    +P    +NS++  Y K  K 
Sbjct: 250 GIERDR---YTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKH 306

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            EA+  L  M+    +P   TY+ LI AY K  + +E     + M+  G  PD +TY  L
Sbjct: 307 EEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTL 366

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I      G +     TY  M+         T  A++  +   G   +M   +  L ++  
Sbjct: 367 ISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAG- 425

Query: 311 PLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRG 366
               D+V    L  V+ +N + S +  +  ++  A  I   +    L      C L  + 
Sbjct: 426 -YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQA 484

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           ++ + + M  A +  +++T N +L A  +   ++    L +E+  R  KPD ++   L  
Sbjct: 485 ME-IYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLH 543

Query: 427 A 427
           A
Sbjct: 544 A 544



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVR 160
           H W V   +  +++   +P+    ++ + + R    IN  N+  ++ +  +  ++++   
Sbjct: 569 HNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNA--MVSIYGKNKMVKKVEE 626

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
               M   ++  S   YNS++H YS++G   +    L E+K   + P   +Y+ +I AYG
Sbjct: 627 VLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYG 686

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           +     E       MK  G  PD +TYN+ I+ +    + +      + ++T+       
Sbjct: 687 RKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNER 746

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           T  +IL  Y   G + + + F   L      + +   ++L+E+  K+
Sbjct: 747 TFNSILQGYSRHGRMVEAKSFLSNLPKIYPGISKQEKQRLSELLAKH 793



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 25/315 (7%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I +    G + EA    +     A  P    Y +++  +S+ G+F +A+     M +  +
Sbjct: 160 IRVFARAGCLAEASAILEA----APAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGV 215

Query: 206 SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            P   TY+ +  AY K  + + E+   +  MK DG   D  TYN LI      GL +   
Sbjct: 216 QPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAA 275

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M          T  ++LD Y      ++     KR+ N+           L   Y
Sbjct: 276 QVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---------EME 375
           +K+ +     +L  ++  R  + ++V    L+S        G+D V +         EM 
Sbjct: 336 VKDGLLEEALELKQEMEFRGMKPDVVTYTTLIS--------GLDRVGKIDAALATYSEMV 387

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG 434
                 N+ T N ++  +     F  +  +  +L +    PD+VT   L     + G D 
Sbjct: 388 RNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDS 447

Query: 435 --TGALEMWKRIGFL 447
             +G  +  K+ G++
Sbjct: 448 EVSGVFKEMKKAGYI 462


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 121/288 (42%), Gaps = 16/288 (5%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  +EA   F  M     +P++  Y  ++HGY+  G F + + F N MK   +   
Sbjct: 231 LCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVAN 290

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              +  LI AY K  M DE  + L  M+  G SPD  TY+ LI      G L      + 
Sbjct: 291 CLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFN 350

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL--------VRKL 320
            M+   +   +    +++  +   G L K ++    ++N+  P             + K 
Sbjct: 351 QMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKE 410

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKV 379
             V   +++F  + D+G+       R++++    L+   CL+   G   SV+  M SA +
Sbjct: 411 GRVMDAHHIFDLVKDIGE-------RSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGI 463

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +  T N ++  Y K         L  E+  + +KP  VT  I+ D 
Sbjct: 464 GPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDG 511



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+   ++ A    ++M    + P+   Y S+IHGYS +G++ EA     EM  
Sbjct: 155 NSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTG 214

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             L P   +++  + +  K+    E       M   G  P+ +TY +L+  +A  G    
Sbjct: 215 RGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFAD 274

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           M   + +M    +         ++DAY   GM+D+
Sbjct: 275 MMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDE 309



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAV---RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           + F+   ++  LC++   ++A+   R   + EG    P +  YN++IHG+ K GK  +A 
Sbjct: 78  DAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVC-SPDVVTYNTVIHGFFKEGKIGKAC 136

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              +EM +    P   T++ +I A  K +  D  ++ L+ M  +G  P+ +TY  +I  +
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGY 196

Query: 255 ACAG 258
           +  G
Sbjct: 197 STLG 200



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 125 VFDMWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           V++M  N I +  I  FNS  I+  +C+EG + +A   F  ++    +  + ++N++I G
Sbjct: 384 VYEMMNNGIPRPNIAFFNS--IVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDG 441

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y  +G+  +A   L+ M    + P + TY+ L+  Y K    D+     + M      P 
Sbjct: 442 YCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPT 501

Query: 244 HITYNLLIQEFACAG 258
            +TYN+++     AG
Sbjct: 502 TVTYNIILDGLFRAG 516



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 124/296 (41%), Gaps = 20/296 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC  G + +AV  F +M G  ++P+  +Y+S+I G+   G   +A   + E
Sbjct: 327 FTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYE 386

Query: 200 MKEMNLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M    +  P    ++ ++ +  K     +      ++K  G   D I +N LI  +   G
Sbjct: 387 MMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVG 446

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            + +      +M++  +   + T   +++ Y   G +D     ++ + + +       ++
Sbjct: 447 EMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKK-------IK 499

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-------LLSHRGIDSVV 371
                Y  N +   L   G  +A++    E++ C   +S          L  +   D  +
Sbjct: 500 PTTVTY--NIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAI 557

Query: 372 ---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              +++ +  V++N+TT N ++ +   ++  +  + L S +    + P+  T GI+
Sbjct: 558 VMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIM 613



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 11/267 (4%)

Query: 48  CCLSSAPSLD---YHSTKHTTLLVESYHEHQALNAL--IQRLNKKVSCPLQILQHDGDWT 102
           CC +  P L    +     T L  +    +  L  L   +R +  V   L+ +   G   
Sbjct: 18  CCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVP 77

Query: 103 KDHFWAVI-RFLKNSSRSRQIPQVFDMW---KNIEKSRINEFNSQKIIGMLCEEGLMEEA 158
               +A++ + L + +RS+Q   +  M    + +    +  +N+  +I    +EG + +A
Sbjct: 78  DAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNT--VIHGFFKEGKIGKA 135

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
              + EM      P +  +NSII+   K    + A L L +M +  + P   TY  +I  
Sbjct: 136 CNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHG 195

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
           Y     ++E     + M   G  PD +++N  +      G  K     + SM  K     
Sbjct: 196 YSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPN 255

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRL 305
             T   +L  Y   G    M  F+  +
Sbjct: 256 IVTYGILLHGYATEGCFADMMSFFNTM 282



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC     +EA+  FQ++    +K ++   N++I+    + +  EA    + + +  
Sbjct: 543 ILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSG 602

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           L P + TY  +I+   K    +E D     M+  GC+P
Sbjct: 603 LVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAP 640


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 125/286 (43%), Gaps = 38/286 (13%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II    E G M+EA++ F++M+    KP+   +N++I GY   GK  EAL  L  
Sbjct: 86  FNS--IINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEF 143

Query: 200 MKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +++  + P   TY+ L++A+  K  M +  +M  KM+   G  PD +TYN L + +A  G
Sbjct: 144 LQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVA-SGMQPDAVTYNTLARAYAEKG 202

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
              R E     ML +R+     T   I++ Y   G +    +F  R       +KE  V 
Sbjct: 203 ETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFR-------MKELGV- 254

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
            L  +++ N +     D  D                           G+D V+  ME   
Sbjct: 255 -LPNLFVFNSLIKGFLDTMDT-------------------------EGVDEVLTLMEENG 288

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           VR +V T + I+ A+         + + +++    ++PDI    IL
Sbjct: 289 VRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSIL 334



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 137/329 (41%), Gaps = 13/329 (3%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ +L  +G   EA   F  +     KP+L  Y +++   ++   F   L  +++++E 
Sbjct: 18  KLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEEN 77

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P S  ++ +I A+ +     E     + MK  GC P   T+N LI+ +  AG  +  
Sbjct: 78  GMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEA 137

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMN-FGMLDKMEKFYKRLLNSRTPLKEDLV--RKL 320
               + +    +     T   ++ A+ N   M +     YK + +   P   D V    L
Sbjct: 138 LKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQP---DAVTYNTL 194

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAK 378
           A  Y +     R +++  ++ +R        C  +++  C   +  +D+   V  M+   
Sbjct: 195 ARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNM-VDASRFVFRMKELG 253

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V  N+   N ++  +L   D + +  +L+ +    V+PD+VT   + +A    +   G +
Sbjct: 254 VLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNA----WSSAGRM 309

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           +  K I       EI  D    ++  KG+
Sbjct: 310 DKCKEIFNDMVKAEIEPDIHAFSILAKGY 338



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A      M  + + P++ I  ++I G+   GK   A+    +M E+ +SP   TY
Sbjct: 342 GEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTY 401

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + LI  YG+ K   + +  L++M+  G  P   T  L+   +   GLL   E
Sbjct: 402 ETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIGLLSESE 453



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 157 EAVRAFQ---EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           E +RA +   EM    + P+    + I++GY K G   +A  F+  MKE+ + P    ++
Sbjct: 203 ETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFN 262

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI+ +      + +D  L +M+ +G  PD +T++ ++  ++ AG + + +  +  M+  
Sbjct: 263 SLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKA 322

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKME 299
            +         +   Y+  G  +K E
Sbjct: 323 EIEPDIHAFSILAKGYVRAGEPEKAE 348



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     I+   C+EG M +A R    M+   + P+L ++NS+I G+            L
Sbjct: 222 NERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVL 281

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M+E  + P   T+  ++ A+      D+       M      PD   +++L + +  A
Sbjct: 282 TLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRA 341

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G  ++ E    SM    +H        ++  + + G ++   K Y+++
Sbjct: 342 GEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKM 389



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 2/148 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G M++    F +M    ++P +  ++ +  GY + G+  +A   L  M++  + P     
Sbjct: 307 GRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVIC 366

Query: 213 DGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I  +    KM   + +  KM ++ G SP+  TY  LI  +  A    + E   + M 
Sbjct: 367 TTVISGWCSAGKMEHAMKVYEKMCEI-GVSPNLKTYETLIWGYGEAKQPLKAEELLQVME 425

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKME 299
            K +  +  TM  I DA+   G+L + E
Sbjct: 426 EKGVFPKKGTMQLIADAWRAIGLLSESE 453



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G ME A++ +++M    + P+L+ Y ++I GY +  +  +A   L  M+E  
Sbjct: 369 VISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKG 428

Query: 205 LSPQSDTYDGLIQAY 219
           + P+  T   +  A+
Sbjct: 429 VFPKKGTMQLIADAW 443


>gi|397136400|gb|AFO11708.1| At4g14190-like protein, partial [Capsella bursa-pastoris]
          Length = 77

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           LVRKLA VYI N MFSRLDDLG  ++ SR  R++L WCLRLL H+ L+S +G+D V++EM
Sbjct: 2   LVRKLANVYIDNLMFSRLDDLGRGISYSRTRRSDLAWCLRLLCHSRLVSRKGLDYVLKEM 61

Query: 375 ESAKVRWNVTTANIIL 390
             A V WN T ANI+L
Sbjct: 62  TEANVTWNTTFANIVL 77


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 5/283 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C  G +EEA++ ++EM    +KP L  ++ +I  +++ GK + A+ +L EM+   
Sbjct: 206 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 265

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P    Y  +I  + +  +  +       M   GC PD +TYN L+        L   E
Sbjct: 266 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAE 325

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
           G    M  + +     T   ++  Y   G LDK  + +  +LN R  L+ D+V    L +
Sbjct: 326 GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR--LRPDIVTYNTLID 383

Query: 323 VYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
              +     + +DL DD+ SR I    + + + + SH            + EM +  +  
Sbjct: 384 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 443

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           N+ T N I+  Y +  +    +  L ++    V PD++T   L
Sbjct: 444 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 486



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  D+W ++    I  N      +I   CE+G +E+A     EM    + P++ 
Sbjct: 387 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 446

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKM 234
            YNSII GY + G  ++   FL +M    +SP   TY+ LI  Y K  KM+D   + L M
Sbjct: 447 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL-LNM 505

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M+ +   PD +TYN+LI  F+  G ++     ++ M  K +     T +++++ ++  G
Sbjct: 506 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 564



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 39/219 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C  GLM +A+R   EM G    P +  YN++++G  K  +  +A   LNEM+E  
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 205 LSPQSDTYDGLIQAY---GKY----KMYDE----------------IDMCLKMMKLDGCS 241
           + P   T+  LI  Y   GK     +++D                 ID   +   LD  +
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 242 ------------PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                       P+H+TY++LI      G ++   G    M+ K +     T  +I+  Y
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
              G + K +KF ++++ ++  +  DL+    L   YIK
Sbjct: 456 CRSGNVSKGQKFLQKMMVNK--VSPDLITYNTLIHGYIK 492



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  II   C  G + +  +  Q+M    + P L  YN++IHGY K  K ++A   
Sbjct: 445 IMTYNS--IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 502

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           LN M++  + P   TY+ LI  +  +    E     + M   G  PD  TY  +I     
Sbjct: 503 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 562

Query: 257 AGLLKRMEGTYKSMLTK 273
           AG  K     +  ML +
Sbjct: 563 AGNSKEAFQLHDEMLQR 579



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+FD   N ++ R +      +I  +C +G +++A   + +M    + P+   Y+ +I  
Sbjct: 361 QLFDTMLN-QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + + G+  +A  FL+EM    + P   TY+ +I+ Y +     +    L+ M ++  SPD
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 479

Query: 244 HITYNLLIQEF 254
            ITYN LI  +
Sbjct: 480 LITYNTLIHGY 490



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C EG +++A++ F  M    L+P +  YN++I G  + G  ++A    ++M    + P  
Sbjct: 351 CIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH 410

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI ++ +    ++    L  M   G  P+ +TYN +I+ +  +G + + +   + 
Sbjct: 411 VTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 470

Query: 270 MLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
           M+  ++     T   ++  Y+        F +L+ MEK
Sbjct: 471 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK 508



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 56/311 (18%), Positives = 118/311 (37%), Gaps = 7/311 (2%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N +    ++   C+    ++      EME   + P +  +N ++    + G    A+
Sbjct: 91  SEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAM 150

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++ M    L P   TY+ +++   +  M+D+     K M   G +PD  ++ +LI  F
Sbjct: 151 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 210

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G ++     YK M  + +     +   ++  +   G +D    + + +         
Sbjct: 211 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 270

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC----LLSHRGIDSV 370
            +   +   + +  + S    + D++       ++V    LL+  C    LL   G+   
Sbjct: 271 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--- 327

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           + EM    V  ++ T   ++  Y           L   +  + ++PDIVT   L D    
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 431 GFDGTGALEMW 441
             D   A ++W
Sbjct: 388 QGDLDKANDLW 398


>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
 gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 147/317 (46%), Gaps = 25/317 (7%)

Query: 153 GLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL ++A    +EM+     +P +  Y+ +I    ++  F++  + L++M+ + + P + T
Sbjct: 79  GLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVT 138

Query: 212 YDGLIQAYGKYKMYDEIDMCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y+ +I AYGK KM+ E++  L +M+    C PD  T N  I+ F  +G ++ ME  Y+  
Sbjct: 139 YNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKF 198

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            +  +     T   +LD+Y   G   KM    ++ +R   S T +  ++V          
Sbjct: 199 QSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVID-------- 250

Query: 328 YMFSRLDDLGD-DLASRIGRTELV--WCLRLLSHACLLSHRG----IDSVVREMESAKVR 380
             F R  DL   +   R+ R+E +   C+ L S        G    I SV+R +E++ V 
Sbjct: 251 -AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVT 309

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            +    N ++ AY +++ F  ++ +L  +  +  KPD VT   +  A  I     G    
Sbjct: 310 LDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSI----KGMTSH 365

Query: 441 WKRIGFLFKTVEINTDP 457
            K++  L  +VE+   P
Sbjct: 366 AKKLRNLLGSVEVTRSP 382



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 59/115 (51%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +++    F+ M    +KPS     S++  Y + GK  +    L  ++  +
Sbjct: 248 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSD 307

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++  +  ++ L+ AYG+ + + E+   L++M+  GC PD +TY  +I+ ++  G+
Sbjct: 308 VTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGM 362



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 10/246 (4%)

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P +  Y  LI   GK K  D+     + M  +GC+  H +Y  L+  +  +GL  +    
Sbjct: 28  PYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSI 87

Query: 267 YKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            + M  T        T   ++ + +     DK++     + +            + + Y 
Sbjct: 88  MEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYG 147

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNV 383
           K  MF+ ++    ++ S+      VW +     A   S +   +++   + +SA +  N+
Sbjct: 148 KAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNI 207

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T NI+L +Y K  +++ +  ++  +   H    IVT  ++ DA    F   G L   K+
Sbjct: 208 KTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDA----FGRAGDL---KQ 260

Query: 444 IGFLFK 449
           + +LF+
Sbjct: 261 MEYLFR 266


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 178/399 (44%), Gaps = 19/399 (4%)

Query: 113 LKNSSRSRQIPQ----VFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           LKN  R+RQ       V +M   +EK  + ++F    +I        +E+A+   QEME 
Sbjct: 32  LKNVLRARQWELAEGLVLEM---VEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEA 88

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +KP L I++++I    K+  +++A    +++K   ++P    Y+ +I  YGK K Y E
Sbjct: 89  GGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKE 148

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  MK  G  PD ++Y +LI  +A +      +  +  M TK + L  +T   ++D
Sbjct: 149 AQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMID 208

Query: 288 AYMNFGMLDKMEKFYKRLLNSRT-PLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRI 344
            Y    M+   E+ +  +  S+T  +++++V    + +VY +  + S   ++   + ++ 
Sbjct: 209 VYGKLEMVRDAEELFWSM--SKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG 266

Query: 345 GRTE--LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           G     + +   L  H   L H     +VR+M+   +  N  T + ++  Y K   +   
Sbjct: 267 GVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRA 326

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
             L   L  +  + D     ILY +  + ++  G +   KR+    K  +I      +++
Sbjct: 327 AFLFKTLREKGFEMD----EILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISI 382

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKH 501
             K   L    ++Y         K+  TY+++I L +++
Sbjct: 383 LAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRN 421



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 123/328 (37%), Gaps = 51/328 (15%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---- 219
           E  G+A  PS+  YN ++    +  ++  A   + EM E +L P   T+  LI  Y    
Sbjct: 17  EKGGYA--PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRAN 74

Query: 220 -------------------------------GKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                          GK K Y +       +K  G +PD + YN
Sbjct: 75  RLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYN 134

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            +I  +  A   K  +G    M    +   + +   +++AY       + ++ +  +   
Sbjct: 135 SMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTK 194

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC----LRLLSHACLLSH 364
              L       + +VY K  M    ++L   ++  +G  + V      +++   A LLS 
Sbjct: 195 GIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSE 254

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAY-LKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
              +          V  NV T N IL  + L ++  K +R L+ ++  R ++P+ VT   
Sbjct: 255 -AFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMR-LVRKMQQRGIEPNAVTYST 312

Query: 424 LYDARRIGFDGTGALEMWKRIGFLFKTV 451
           L       +  TG    + R  FLFKT+
Sbjct: 313 LISI----YGKTGK---YDRAAFLFKTL 333


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 5/283 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C  G +EEA++ ++EM    +KP L  ++ +I  +++ GK + A+ +L EM+   
Sbjct: 267 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 326

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P    Y  +I  + +  +  +       M   GC PD +TYN L+        L   E
Sbjct: 327 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAE 386

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
           G    M  + +     T   ++  Y   G LDK  + +  +LN R  L+ D+V    L +
Sbjct: 387 GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR--LRPDIVTYNTLID 444

Query: 323 VYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
              +     + +DL DD+ SR I    + + + + SH            + EM +  +  
Sbjct: 445 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 504

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           N+ T N I+  Y +  +    +  L ++    V PD++T   L
Sbjct: 505 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  D+W ++    I  N      +I   CE+G +E+A     EM    + P++ 
Sbjct: 448 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKM 234
            YNSII GY + G  ++   FL +M    +SP   TY+ LI  Y K  KM+D   + L M
Sbjct: 508 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL-LNM 566

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M+ +   PD +TYN+LI  F+  G ++     ++ M  K +     T +++++ ++  G
Sbjct: 567 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 625



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  II   C  G + +  +  Q+M    + P L  YN++IHGY K  K ++A   
Sbjct: 506 IMTYNS--IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 563

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           LN M++  + P   TY+ LI  +  +    E     + M   G  PD  TY  +I     
Sbjct: 564 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 623

Query: 257 AGLLKRMEGTYKSMLTK 273
           AG  K     +  ML +
Sbjct: 624 AGNSKEAFQLHDEMLQR 640



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+FD   N ++ R +      +I  +C +G +++A   + +M    + P+   Y+ +I  
Sbjct: 422 QLFDTMLN-QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + + G+  +A  FL+EM    + P   TY+ +I+ Y +     +    L+ M ++  SPD
Sbjct: 481 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 540

Query: 244 HITYNLLIQEF 254
            ITYN LI  +
Sbjct: 541 LITYNTLIHGY 551



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C EG +++A++ F  M    L+P +  YN++I G  + G  ++A    ++M    + P  
Sbjct: 412 CIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH 471

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI ++ +    ++    L  M   G  P+ +TYN +I+ +  +G + + +   + 
Sbjct: 472 VTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 531

Query: 270 MLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
           M+  ++     T   ++  Y+        F +L+ MEK
Sbjct: 532 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK 569



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 56/311 (18%), Positives = 118/311 (37%), Gaps = 7/311 (2%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N +    ++   C+    ++      EME   + P +  +N ++    + G    A+
Sbjct: 152 SEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAM 211

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++ M    L P   TY+ +++   +  M+D+     K M   G +PD  ++ +LI  F
Sbjct: 212 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 271

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G ++     YK M  + +     +   ++  +   G +D    + + +         
Sbjct: 272 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 331

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC----LLSHRGIDSV 370
            +   +   + +  + S    + D++       ++V    LL+  C    LL   G+   
Sbjct: 332 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--- 388

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           + EM    V  ++ T   ++  Y           L   +  + ++PDIVT   L D    
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 431 GFDGTGALEMW 441
             D   A ++W
Sbjct: 449 QGDLDKANDLW 459


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 34/288 (11%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R   F    +I  +C+EG +E A   F+EM+   L P    YNS+I G+ K+G+ ++ +
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            F  EMK+M   P   TY+ LI  + K+          + MK +G  P+ ++Y+ L+  F
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G++++    Y  M    +     T  +++DA    G L    +           L  
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR-----------LGN 426

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           ++++   E  +  Y  + +D L D  A R+   E                     +  +M
Sbjct: 427 EMLQVGVEWNVVTYT-ALIDGLCD--AERMKEAE--------------------ELFGKM 463

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           ++A V  N+ + N ++  ++K K+      LL+EL  R +KPD++  G
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M+EA   F +M+   + P+L  YN++IHG+ K    + AL  LNE+K   
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y   I      +  +   + +  MK  G   + + Y  L+  +  +G     E
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG--NPTE 560

Query: 265 GTY--KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G +    M    + +   T   ++D      ++ K   ++ R+ N
Sbjct: 561 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 166/393 (42%), Gaps = 13/393 (3%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P + DM +    + I  +N+  +I   C EGL+ EA      M G  LKP+L  YN++I+
Sbjct: 206 PFLIDMEQKGIFADIVTYNT--LINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVIN 263

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G  K G++  A    NEM  + LSP + TY+ L+    +   + E       M   G SP
Sbjct: 264 GLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D I+++ LI   +  G L +    ++ M T  +   +     +++ Y   GM+ +  +  
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
            ++L     L       +     K  + +  + L D++  R    +      L+   C  
Sbjct: 384 DKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKE 443

Query: 363 SHRGID-SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            + G   S+   M    ++ ++ T NI++  + K  + +    L +E+ +R + P+ ++ 
Sbjct: 444 GNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISY 503

Query: 422 GILYDAR-RIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
            IL +    +GF  + A  +W    R G     V  NT   V+  Y +   L   +E   
Sbjct: 504 AILVNGYCNLGFV-SEAFRLWDEMIRKGIKPTLVTCNT---VIKGYCRSGDLSKADEFLG 559

Query: 478 SLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
            +          TY  LI+  +K  G+ +D  F
Sbjct: 560 KMISEGVGPDSITYNTLINGFVK--GEYMDKAF 590



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++ ++ +  ++W  +   +I  N  +   ++   C  G + EA R + EM    +KP+L 
Sbjct: 477 KTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLV 536

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N++I GY + G  ++A  FL +M    + P S TY+ LI  + K +  D+    +  M
Sbjct: 537 TCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  PD +TYN+++  F   G ++  E   + M+ + +    ST   +++ Y++   L
Sbjct: 597 ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNL 656

Query: 296 DKMEKFYKRLL 306
            +  +F+  +L
Sbjct: 657 KEAFRFHDEML 667



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 164/376 (43%), Gaps = 34/376 (9%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNA---LIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR 111
            L   +T + TLLVES   +  L A       L++ VS  L             F ++I 
Sbjct: 285 GLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLI-----------SFSSLIG 333

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEM--EG 167
               SSR+  + Q    +++++ S +   N     +I   C  G+M EA+    +M  +G
Sbjct: 334 V---SSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG 390

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            AL   +  YN+I++G  K     +A    +EM E  + P   T+  LI  + K     +
Sbjct: 391 CAL--DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                 +M      PD +TYN+LI  F     +++    +  M+++++     +   +++
Sbjct: 449 ALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVN 508

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDD-LGDDLASRI 344
            Y N G + +  + +  ++  R  +K  LV    + + Y ++   S+ D+ LG  ++  +
Sbjct: 509 GYCNLGFVSEAFRLWDEMI--RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV 566

Query: 345 GRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           G   + +   +      +    +D    ++ +ME+  ++ +V T N+IL  + +    + 
Sbjct: 567 GPDSITYNTLING---FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQE 623

Query: 402 LRVLLSELPTRHVKPD 417
             ++L ++  R + PD
Sbjct: 624 AELILRKMIERGIDPD 639



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 7/325 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            ++++  I +S I  N +    ++  LC++  +++      +ME   +   +  YN++I+
Sbjct: 169 AWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLIN 228

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            Y + G   EA   +N M    L P   TY+ +I    K   Y         M   G SP
Sbjct: 229 AYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSP 288

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D  TYN L+ E          +  +  ML + +     +  +++      G LD+   ++
Sbjct: 289 DTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYF 348

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-- 360
           + +  S       +   L   Y +N M S   ++ D +  +    ++V    +L+  C  
Sbjct: 349 RDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKK 408

Query: 361 -LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            LL+    +++  EM    V  +  T   ++  + K  +      L   +  +++KPDIV
Sbjct: 409 KLLADA--NALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIV 466

Query: 420 TIGILYDARRIGFDGTGALEMWKRI 444
           T  IL D      +   A E+W  +
Sbjct: 467 TYNILIDGFCKTTEMEKANELWNEM 491



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 122 IPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           + + F +W  + +  I         +I   C  G + +A     +M    + P    YN+
Sbjct: 516 VSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNT 575

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+G+ K    ++A   +N+M+   L P   TY+ ++  + +     E ++ L+ M   G
Sbjct: 576 LINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERG 635

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             PD  TY  LI  +     LK     +  ML +
Sbjct: 636 IDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQR 669


>gi|147860572|emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
          Length = 446

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 140/327 (42%), Gaps = 55/327 (16%)

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G F +A    +E+   +  P       LI AYGK   + E+   L               
Sbjct: 149 GLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVTRILHQ------------- 195

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                     G L+ ME   K M+++   + S+T  A +  Y  FG L +ME  Y RL  
Sbjct: 196 ---------GGQLEMMENALKEMVSRGFPVDSATGNAFIRYYSIFGSLTEMEAAYDRLKK 246

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSHACLLSH 364
           SR  ++E+ +R ++  YIK   + RL     D+   +GR  +   +W L LLS+A     
Sbjct: 247 SRILIEEEGIRAMSFAYIKEKKYYRLGQFLRDVG--LGRKNVGNLLWNLLLLSYAANFKM 304

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + +     EM  A    ++TT NI  LA+ +M  F  L + L  +    V  D+VT G +
Sbjct: 305 KSLQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLSLEHMQHVKVVADLVTYGCV 364

Query: 425 YDA---RRIGFDGTGALEMWKRIGFLFKTVEINTDPL------VLAVYGKGHFLRYCEEV 475
            DA   RR+G          K + F  K + ++  PL      V  V GKG F       
Sbjct: 365 VDAYLDRRLG----------KNLDFALKKMNMDDSPLVSTDHFVFEVLGKGDF------- 407

Query: 476 YSSLEPY--SREKKRWTYQNLIDLVIK 500
           +SS E +  S+   +WTY+ LI   +K
Sbjct: 408 HSSSEAFLESKRNGKWTYRKLIATYLK 434


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 15/282 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC +   +EA+   Q M  EG    P +  +N++IHG+ K G+ ++A    NEM +
Sbjct: 201 VIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQ 260

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             + P   TY+ ++ A  K +  D+ +  L+ M   G  PD +TYN +I  ++C+G  K 
Sbjct: 261 KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKE 320

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKEDLVRK-- 319
               ++ M +K +   + T  + + +    G     E+ ++ +      P   D+V    
Sbjct: 321 SAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMP---DIVSYSI 377

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREME 375
           L   Y     F+ +++L   +A + G      C+ +L  A   + RG+      V  EM+
Sbjct: 378 LLHGYATEGRFADMNNLFHSMADK-GIVSNCHCINILISA--HAKRGMMDEAMLVFTEMQ 434

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
              VR NV T + ++ A+ +M          S++ +  ++P+
Sbjct: 435 GQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPN 476



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 133/316 (42%), Gaps = 6/316 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  ++A   FQ M      P +  Y+ ++HGY+  G+F +     + M +  +   
Sbjct: 347 LCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSN 406

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
               + LI A+ K  M DE  +    M+  G  P+ +TY+ LI  F   G L      + 
Sbjct: 407 CHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFS 466

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M++  +   ++   +++  +   G L K ++F   +++    L    +   + +     
Sbjct: 467 QMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSK--GLHRPNIVFFSSIIHSLC 524

Query: 329 MFSRLDDLGD--DLASRIG-RTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVT 384
           +  R+ D  D  +L   IG R  +V    L+   CL+        V+  M S  +  +V 
Sbjct: 525 IEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV 584

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           T N ++  Y K        +L  E+  + VKP  VT  I+ D        + A +M+  +
Sbjct: 585 TNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEM 644

Query: 445 GFLFKTVEINTDPLVL 460
                 V+I+T  ++L
Sbjct: 645 IDSGTAVDIDTYKILL 660



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/325 (19%), Positives = 122/325 (37%), Gaps = 70/325 (21%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I   C  G + +A+  F +M    ++P+  +Y+S+IHG+   G   +A  
Sbjct: 439 RPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKE 498

Query: 196 FLNEMKEMNL------------------------------------SPQSDTYDGLIQAY 219
           F++EM    L                                     P   T++ LI  Y
Sbjct: 499 FISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGY 558

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
                 ++    L  M   G  PD +T N L+  +  +G +      ++ ML K++   +
Sbjct: 559 CLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTT 618

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            T   +LD  +  G     +K +  +++S T +  D  + L +   +N       DL D+
Sbjct: 619 VTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN-------DLTDE 671

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                              A  L H+        + +   ++++T  N ++ A  K++  
Sbjct: 672 -------------------AITLFHK--------LGAMDCKFDITILNTMINALYKVRRR 704

Query: 400 KHLRVLLSELPTRHVKPDIVTIGIL 424
           +    L + + T  + P++ T G++
Sbjct: 705 EEANDLFAAISTSGLVPNVSTYGVM 729



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K + +  I  F+S  II  LC EG + +A   F  +     +P++  +NS+I GY  +
Sbjct: 504 MSKGLHRPNIVFFSS--IIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLV 561

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK  +A   L+ M  + + P   T + L+  Y K    D+  +  + M      P  +TY
Sbjct: 562 GKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTY 621

Query: 248 NLLIQEFACAGLLKRMEGTYKSML 271
           N+++     AG     +  +  M+
Sbjct: 622 NIVLDGLLRAGRTSAAKKMFHEMI 645



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 45/104 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC   L +EA+  F ++     K  + I N++I+   K+ +  EA      +    L P 
Sbjct: 663 LCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPN 722

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  +I+   K    +E D     M+  GC+P     N +I+
Sbjct: 723 VSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIR 766



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 84/193 (43%), Gaps = 9/193 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +++ +  F+EM    +KP+   YN ++ G  + G+ + A    +EM +   +   
Sbjct: 594 CKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDI 653

Query: 210 DTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           DTY  L++   +  + DE I +  K+  +D C  D    N +I         +     + 
Sbjct: 654 DTYKILLKGLCRNDLTDEAITLFHKLGAMD-CKFDITILNTMINALYKVRRREEANDLFA 712

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLKEDLVRKL---A 321
           ++ T  +    ST   ++   +  G +++ +  +  +  S     + L  D++R L    
Sbjct: 713 AISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 772

Query: 322 EVYIKNYMFSRLD 334
           ++    Y  S++D
Sbjct: 773 DIVKAGYYMSKVD 785


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 38/292 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I      G + +AV  F+ M+    KP+L +YN++I   SK G +  AL   
Sbjct: 154 NVFVYSSLICAYGRSGKLAKAVEIFEAMK-VVCKPNLVVYNAVIDACSKGGDYPTALRIF 212

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM E  +SP   T++ LI A G+   ++E D     M+  G + D +TYN LI  + C 
Sbjct: 213 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY-CR 271

Query: 258 GLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
           G    +       + K   +  S  T   ++D Y   G+  +    ++ + N        
Sbjct: 272 GGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ------- 324

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
                  V      ++ + D+                     HA L +     S+ R ME
Sbjct: 325 ------NVEPDGICYNTMVDI---------------------HARLGNFDEAHSIRRAME 357

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            A    ++ T N +L +Y K   F+    LL E+  R   P+I+T   L DA
Sbjct: 358 EAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDA 409



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 40/280 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C  G M       + M +   ++PS+  Y+++I GY+K+G  +EA+    EM+  
Sbjct: 265 LIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ 324

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N+ P    Y+ ++  + +   +DE     + M+  G + D +TYN L+  +   G  +  
Sbjct: 325 NVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREA 384

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               + M  +       T  A++DAY   G        ++ +   +  L+ D+V      
Sbjct: 385 MSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV--KKAGLQPDVV------ 436

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
                ++S L D                C +  S    L      +++ EM    +R NV
Sbjct: 437 -----LYSTLVD---------------GCCKNGSPDEAL------ALLEEMADNGIRPNV 470

Query: 384 TTANIILLAYLKM-----KDFKHLRVLLSELPTRHVKPDI 418
            T N +L AY +      K F  LR  L    T  +KP +
Sbjct: 471 ITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSM 510


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 38/292 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I      G + +AV  F+ M+    KP+L +YN++I   SK G +  AL   
Sbjct: 155 NVFVYSSLICAYGRSGKLAKAVEIFEAMK-VVCKPNLVVYNAVIDACSKGGDYPTALRIF 213

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM E  +SP   T++ LI A G+   ++E D     M+  G + D +TYN LI  + C 
Sbjct: 214 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY-CR 272

Query: 258 GLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
           G    +       + K   +  S  T   ++D Y   G+  +    ++ + N        
Sbjct: 273 GGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ------- 325

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
                  V      ++ + D+                     HA L +     S+ R ME
Sbjct: 326 ------NVEPDGICYNTMVDI---------------------HARLGNFDEAHSIRRAME 358

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            A    ++ T N +L +Y K   F+    LL E+  R   P+I+T   L DA
Sbjct: 359 EAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDA 410



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 40/280 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C  G M       + M +   ++PS+  Y+++I GY+K+G  +EA+    EM+  
Sbjct: 266 LIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ 325

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N+ P    Y+ ++  + +   +DE     + M+  G + D +TYN L+  +   G  +  
Sbjct: 326 NVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREA 385

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               + M  +       T  A++DAY   G        ++ +   +  L+ D+V      
Sbjct: 386 MSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV--KKAGLQPDVV------ 437

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
                ++S L D                C +  S    L      +++ EM    +R NV
Sbjct: 438 -----LYSTLVD---------------GCCKNGSPDEAL------ALLEEMADNGIRPNV 471

Query: 384 TTANIILLAYLKM-----KDFKHLRVLLSELPTRHVKPDI 418
            T N +L AY +      K+F  LR  L    T  +KP +
Sbjct: 472 ITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSV 511


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 178/399 (44%), Gaps = 19/399 (4%)

Query: 113 LKNSSRSRQIPQ----VFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           LKN  R+RQ       V +M   +EK  + ++F    +I        +E+A+   QEME 
Sbjct: 32  LKNVLRARQWELAEGLVLEM---VEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEA 88

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +KP L I++++I    K+  +++A    +++K   ++P    Y+ +I  YGK K Y E
Sbjct: 89  GGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKE 148

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  MK  G  PD ++Y +LI  +A +      +  +  M TK + L  +T   ++D
Sbjct: 149 AQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMID 208

Query: 288 AYMNFGMLDKMEKFYKRLLNSRT-PLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRI 344
            Y    M+   E+ +  +  S+T  +++++V    + +VY +  + S   ++   + ++ 
Sbjct: 209 VYGKLEMVRDAEELFWSM--SKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG 266

Query: 345 GRTE--LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           G     + +   L  H   L H     +VR+M+   +  N  T + ++  Y K   +   
Sbjct: 267 GVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRA 326

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
             L   L  +  + D     ILY +  + ++  G +   KR+    K  +I      +++
Sbjct: 327 AFLFKTLREKGFEMD----EILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISI 382

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKH 501
             K   L    ++Y         K+  TY+++I L +++
Sbjct: 383 LAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRN 421



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 123/328 (37%), Gaps = 51/328 (15%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---- 219
           E  G+A  PS+  YN ++    +  ++  A   + EM E +L P   T+  LI  Y    
Sbjct: 17  EKGGYA--PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRAN 74

Query: 220 -------------------------------GKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                          GK K Y +       +K  G +PD + YN
Sbjct: 75  RLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYN 134

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            +I  +  A   K  +G    M    +   + +   +++AY       + ++ +  +   
Sbjct: 135 SMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTK 194

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC----LRLLSHACLLSH 364
              L       + +VY K  M    ++L   ++  +G  + V      +++   A LLS 
Sbjct: 195 GIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSE 254

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAY-LKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
              +          V  NV T N IL  + L ++  K +R L+ ++  R ++P+ VT   
Sbjct: 255 -AFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMR-LVRKMQQRGIEPNAVTYST 312

Query: 424 LYDARRIGFDGTGALEMWKRIGFLFKTV 451
           L       +  TG    + R  FLFKT+
Sbjct: 313 LISI----YGKTGK---YDRAAFLFKTL 333


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 138/325 (42%), Gaps = 4/325 (1%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLM-EEAVRAFQ 163
           +A    +   SR+R+  +    ++ ++++  + +      II +  ++G   E  +  F+
Sbjct: 118 YAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFE 177

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EM+   ++P    YN+ I   +      EA     +MK  N +P   TY+ L+  YGK  
Sbjct: 178 EMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAG 237

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            Y+E    LK M+  GC P+ +TYN L+  F  AGL         SM++K +     T  
Sbjct: 238 WYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYT 297

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-AS 342
           ++L AY   G +++  + Y ++  S           L  ++ KN  FS +  + +D+ A 
Sbjct: 298 SLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQAC 357

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            +    + W   L +      +  +  V R M+ A    +  T NI++ AY +       
Sbjct: 358 GVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQA 417

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
             +   +      PD+ T   L  A
Sbjct: 418 LSIYDGMLQAGCTPDLATFNTLLAA 442



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 143/347 (41%), Gaps = 38/347 (10%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   SR+ ++ Q  +++  +  S    N F    +IGM  +     E +  F++M+   
Sbjct: 299 LLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACG 358

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P +  +NS++  + K G ++E L     MK+    P   T++ LI+AYG+    D+  
Sbjct: 359 VEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQAL 418

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M   GC+PD  T+N L+   A  G  +  E     +             ++L AY
Sbjct: 419 SIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAY 478

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD----------LGDD 339
            N G L+K+++    L     P  + L++    VY K  +    +D          L D 
Sbjct: 479 ANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDT 538

Query: 340 -----LASRIGR-------TELVWCLR-------LLSHACLLS-------HRGIDSVVRE 373
                + S  G+       T+    LR       ++++ CL+        +R  ++ +RE
Sbjct: 539 STFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRE 598

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             +A    ++ + N ++ +Y K         +  E+ +  ++PD  T
Sbjct: 599 CMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFT 645



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 12/327 (3%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-- 165
           ++++ L    +  +  +VF+  +     R +      ++ +L  E  +    R F+ +  
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KM 224
           EG+ L   +  Y S+I   S+  KF EAL F  +MKE    P   TY+ +I  YGK  + 
Sbjct: 111 EGYPL--DVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRS 168

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           ++ I    + MK  G  PD  TYN  I   A   L +     +  M +        T  A
Sbjct: 169 WENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNA 228

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LD Y   G  ++     K + ++          +L   + +  + +   ++ D + S+ 
Sbjct: 229 LLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKG 288

Query: 345 GRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              ++     LLS     S  G       +  +M ++    N  T N ++  + K K+F 
Sbjct: 289 IEPDVFTYTSLLSA---YSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFS 345

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDA 427
            + V+  ++    V+PDIVT   L  A
Sbjct: 346 EMMVIFEDMQACGVEPDIVTWNSLLGA 372



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 160/398 (40%), Gaps = 27/398 (6%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + R    + ++++ ++   I  +E+     I       L EEA   F +M+     P   
Sbjct: 165 KGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRV 224

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN+++  Y K G +NEA   L EM+     P   TY+ L+ A+G+  + +        M
Sbjct: 225 TYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G  PD  TY  L+  ++ AG +++    Y  M T      S T  A++      GM 
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALI------GMH 338

Query: 296 DKMEKFYKRLL----NSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
            K + F + ++         ++ D+V    L   + KN M+S +  +   +  + G    
Sbjct: 339 GKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGM-KKAGFEPD 397

Query: 350 VWCLRLLSHA---CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                +L  A   C  S + + S+   M  A    ++ T N +L A  +   ++H  ++L
Sbjct: 398 KATFNILIEAYGRCGSSDQAL-SIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELIL 456

Query: 407 SELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA----V 462
            EL     KP+ +    +  A   G    G LE  K +     T+ +    ++L     V
Sbjct: 457 DELNRSSYKPNDIAYASMLHAYANG----GELEKLKEMVDTLHTIYVPFTKILLKTFVLV 512

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
           Y K   +   E+ + ++  +       T+  +I +  K
Sbjct: 513 YSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGK 550



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++GM   EG+  +     +E       P L  YN++I  YSK G+ + A    +EM    
Sbjct: 579 LMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNG 638

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S TY+  +  Y    M+ E    +K M   GC PD +TY  L+  +   G  + +E
Sbjct: 639 IQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVE 698



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 11/201 (5%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S  + FN+  +I M  ++G+M++A   F  +    L+P +  YN ++  Y + G + +  
Sbjct: 536 SDTSTFNA--MISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCE 593

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             L E      +P   +Y+ +I +Y K+            M  +G  PD  TYN  +  +
Sbjct: 594 ATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCY 653

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G+        K M          T   ++DAY   G  +++E+  K + +S     +
Sbjct: 654 VNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSSDPNFSK 713

Query: 315 DLVRKLAEVYIKNYMFSRLDD 335
              R++A         +R+DD
Sbjct: 714 AAYRRIA---------ARVDD 725



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L++EA  AF  M           +N++I  Y K G  ++A      ++   L P   TY+
Sbjct: 518 LVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYN 577

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L+  YG+  MY + +  L+     G +PD ++YN +I  ++  G L      +  M++ 
Sbjct: 578 CLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSN 637

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +   S T    +  Y+N GM  +     K +  +     E   R L + Y K   F  +
Sbjct: 638 GIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEV 697

Query: 334 D 334
           +
Sbjct: 698 E 698



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 37/226 (16%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---------- 189
           FN+  ++  L  EG  E A     E+   + KP+   Y S++H Y+  G+          
Sbjct: 436 FNT--LLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDT 493

Query: 190 -------FNEALL-----------FLNEMKEMNLS-------PQSDTYDGLIQAYGKYKM 224
                  F + LL            ++E ++  L+         + T++ +I  YGK  M
Sbjct: 494 LHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGM 553

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            D+      +++  G  PD +TYN L+  +   G+ ++ E T +  +         +   
Sbjct: 554 MDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNT 613

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
           ++ +Y   G L    + +  ++++               Y+   MF
Sbjct: 614 VIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMF 659


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 34/290 (11%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R   F    +I  +C+EG +E A   F+EM+   L P    YNS+I G+ K+G+ ++ +
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            F  EMK+M   P   TY+ LI  + K+          + MK +G  P+ ++Y+ L+  F
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 245

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G++++    Y  M    +     T  +++DA    G L    +           L  
Sbjct: 246 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR-----------LGN 294

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           ++++   E  +  Y  + +D L D  A R+   E ++                     +M
Sbjct: 295 EMLQVGVEWNVVTYT-ALIDGLCD--AERMKEAEELF--------------------GKM 331

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           ++A V  N+ + N ++  ++K K+      LL+EL  R +KPD++  G  
Sbjct: 332 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 381



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M+EA   F +M+   + P+L  YN++IHG+ K    + AL  LNE+K   
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y   I      +  +   + +  MK  G   + + Y  L+  +  +G     E
Sbjct: 371 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG--NPTE 428

Query: 265 GTY--KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G +    M    + +   T   ++D      ++ K   ++ R+ N
Sbjct: 429 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 473


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 151/366 (41%), Gaps = 13/366 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +SR+  +  ++ K +E S     I  +NS  +I     +GL++EA+    +M    +KP 
Sbjct: 338 KSRRPREAMEVLKEMEASGFAPSIVTYNS--LISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +++ G+ K GK + A+    EM+     P   T++ LI+ +G    + E+    +
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            +K+  C PD +T+N L+  F   G+   + G +K M          T   ++ AY   G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-LGDDLASRIGRTELVWC 352
             D+    Y+R+L++           +     +  ++ + +  L +    R    EL +C
Sbjct: 516 FFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYC 575

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
             L ++A       + ++  E+ S  +         ++L Y K            EL  +
Sbjct: 576 SLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQ 635

Query: 413 HVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL 469
              PDI T+  +   Y  RR+       L   K  GF   T  + T   ++ +Y +    
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGF---TPSLTTYNSLMYMYSRTEHF 692

Query: 470 RYCEEV 475
              E++
Sbjct: 693 EKSEDI 698



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 133/340 (39%), Gaps = 14/340 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L +EG    A     ++    +   +  Y S+I  Y+  G++ EA++   +++E  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   TY+ ++  YGK  M + +I   +  MK  G +PD  TYN LI       L +  
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              ++ M          T  A+LD Y       +  +  K +  S           L   
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKV 379
           Y ++ +     +L   +  +  + ++     LLS        G D     V  EM  A  
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG---FEKTGKDDYAMKVFEEMRVAGC 427

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTG 436
           + N+ T N ++  +    +F  +  +  E+      PDIVT   L   +    +  + +G
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
             +  KR GF+ +    NT   +++ Y +  F      +Y
Sbjct: 488 VFKEMKRAGFVPERDTFNT---LISAYSRCGFFDQAMAIY 524



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 7/260 (2%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+   + P L  YN++I    +   + EA     EMK    SP   TY+ L+  YGK + 
Sbjct: 282 MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRR 341

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    LK M+  G +P  +TYN LI  +A  GLL         M+ K +     T   
Sbjct: 342 PREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTT 401

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +L  +   G  D   K ++ +  +           L +++     F  +  + +++    
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICE 461

Query: 345 GRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              ++V    LL+   +    G+DS    V +EM+ A       T N ++ AY +   F 
Sbjct: 462 CVPDIVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFD 518

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               +   +    V PD+ T
Sbjct: 519 QAMAIYRRMLDAGVTPDLST 538



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
            E++    +E+    +KP +  +N++I  Y + G+  EA     EMK+  L+P   TY+ 
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            I +Y    M+ E    +K M  +GC P+  TYN LI  F
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              PSL  YNS+++ YS+   F ++   L E+    + P   +++ +I AY +     E 
Sbjct: 671 GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 MK  G +PD ITYN  I  +A   +        K M+        +T  +++D 
Sbjct: 731 SRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDW 790

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           +      D+   F   L N    + +D  R+L E
Sbjct: 791 FCKLNRRDEASSFISNLRNLDPSVTKDEERRLLE 824



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  FN+  +I   C  G M+EA R F EM+ F L P +  YN+ I  Y+    F EA
Sbjct: 708 KPDIISFNT--VIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           +  +  M +    P  +TY+ LI  + K    DE
Sbjct: 766 IDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDE 799



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 41/273 (15%)

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E FA   S  +   II    K G+ + A   L++++   +      Y  LI AY     Y
Sbjct: 177 EDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRY 236

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E  M  K ++ +GC P  ITYN+++  +                   +M +  S +  +
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYG------------------KMGMPWSKIAGL 278

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKNYMFSRLDDLGDDLASR 343
           +D+  + G+   +  +   + + R   +  L  + AEV+  +K   FS      + L   
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCR---RGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDV 335

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
            G++                 R    V++EME++    ++ T N ++ AY +        
Sbjct: 336 YGKSR--------------RPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
            L S++  + +KPD+ T   L      GF+ TG
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLS----GFEKTG 410



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK---IGKFNEALLFLNEMKEMNLSPQSD 210
           L+ E  RAF E+      P +   N+++  Y +   + K NE    LN +K+   +P   
Sbjct: 621 LLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE---ILNFIKDSGFTPSLT 677

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ L+  Y + + +++ +  L+ +   G  PD I++N +I  +   G +K     +  M
Sbjct: 678 TYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEM 737



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/268 (17%), Positives = 106/268 (39%), Gaps = 34/268 (12%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  ++A+  ++ M    + P L  YN+++   ++ G + ++   L EMK+    P   TY
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+ AY   K  + +    + +      P  +    L+  ++ + LL   E  +  +  
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           +      +T+ A++  Y    M+ K  +    +LN                +IK+  F+ 
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTNE----ILN----------------FIKDSGFTP 674

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
                + L     RTE                   + ++RE+ +  ++ ++ + N ++ A
Sbjct: 675 SLTTYNSLMYMYSRTE--------------HFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           Y +    K    + +E+    + PD++T
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVIT 748


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           FN+  +I   C+ G + +A +   EM+   +  P +  YN++I G SK G   +A L L 
Sbjct: 368 FNT--LISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQ 425

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EM+ +   P   TY  LI  Y K+ MY+E +     M   GC PD ITYN ++  F+ AG
Sbjct: 426 EMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAG 485

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMV--AILDAY 289
           ++ + EG Y+ +  K  +     +    ++D Y
Sbjct: 486 MMSKAEGVYQQLKNKTSYCSPDAITYRILIDGY 518



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 24/239 (10%)

Query: 87  KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI------EKSRINEF 140
           K  C +++  H+             F+    RS + P    + KNI        S  N  
Sbjct: 287 KAGCVMEVYTHNA------------FIGALCRSGKFP----LAKNILLGMIESGSLPNLL 330

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +   +I  LC+ G +++A +  ++M +    KP +  +N++I G+ K G+ ++A   L E
Sbjct: 331 SYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIE 390

Query: 200 MKEMNLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK  N+  P   TY+ LI    K+    +  + L+ M+  GC P+ +TY  LI  +A  G
Sbjct: 391 MKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHG 450

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           + +  E  +  M  K       T   +L A+   GM+ K E  Y++L N  +    D +
Sbjct: 451 MYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAI 509



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 8/303 (2%)

Query: 132 IEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IE  RI +  +    I  LC+ G +++ +   +EM+   + P +  + SII G  K  + 
Sbjct: 179 IESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRI 238

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL--DGCSPDHITYN 248
           ++A      M E    P S TY  ++    +    D +D  L+ M+    GC  +  T+N
Sbjct: 239 DDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHN 298

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             I     +G     +     M+         +   ++D     G +D   K  +++L+S
Sbjct: 299 AFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDS 358

Query: 309 RTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLL-SHACLLSH 364
               K D++    L   + K    S+   L  ++ A  I   ++V    L+   +   S 
Sbjct: 359 GC-CKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL 417

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +    +++EM++   + NV T   ++  Y K   ++    L  E+  +   PDI+T   +
Sbjct: 418 KQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTV 477

Query: 425 YDA 427
             A
Sbjct: 478 LSA 480



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++ A    Q+M      P++  Y ++I G  K  + ++A+  +  M    
Sbjct: 16  LIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG 75

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             P   TY+ LI         D+  + L+ +  +G +P+HITY+ L+
Sbjct: 76  CEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLV 122



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN--LSPQSD 210
           G+ EEA   F EM      P +  YN+++  +SK G  ++A     ++K      SP + 
Sbjct: 450 GMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAI 509

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           TY  LI  Y + +  ++    L+ M   G S D  TYN+LI + A
Sbjct: 510 TYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLA 554



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 38/87 (43%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M       S+  Y ++I G  K G  + A   L +M +   +P   TY  LI    K + 
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLI 251
             +    +K M   GC PD +TYN LI
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLI 87


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 152/366 (41%), Gaps = 13/366 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +SR+  +  ++ K +E S     I  +NS  +I     +GL++EA+    +M    +KP 
Sbjct: 338 KSRRPREAMEVLKEMEASGFAPSIVTYNS--LISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +++ G+ K GK + A+    EM+     P   T++ LI+ +G    + E+    +
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            +K+  C PD +T+N L+  F   G+   + G +K M          T   ++ AY   G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWC 352
             D+    Y+R+L++           +     +  ++ + + +  ++   R    EL +C
Sbjct: 516 FFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYC 575

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
             L ++A       + ++  E+ S  +         ++L Y K            EL  +
Sbjct: 576 SLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQ 635

Query: 413 HVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL 469
              PDI T+  +   Y  RR+       L   K  GF   T  + T   ++ +Y +    
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGF---TPSLTTYNSLMYMYSRTEHF 692

Query: 470 RYCEEV 475
              E++
Sbjct: 693 EKSEDI 698



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 133/340 (39%), Gaps = 14/340 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L +EG    A     ++    +   +  Y S+I  Y+  G++ EA++   +++E  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   TY+ ++  YGK  M + +I   +  MK  G +PD  TYN LI       L +  
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              ++ M          T  A+LD Y       +  +  K +  S           L   
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKV 379
           Y ++ +     +L   +  +  + ++     LLS        G D     V  EM  A  
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG---FEKTGKDDYAMKVFEEMRVAGC 427

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTG 436
           + N+ T N ++  +    +F  +  +  E+      PDIVT   L   +    +  + +G
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
             +  KR GF+ +    NT   +++ Y +  F      +Y
Sbjct: 488 VFKEMKRAGFVPERDTFNT---LISAYSRCGFFDQAMAIY 524



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 7/260 (2%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+   + P L  YN++I    +   + EA     EMK    SP   TY+ L+  YGK + 
Sbjct: 282 MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRR 341

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    LK M+  G +P  +TYN LI  +A  GLL         M+ K +     T   
Sbjct: 342 PREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTT 401

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +L  +   G  D   K ++ +  +           L +++     F  +  + +++    
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICE 461

Query: 345 GRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              ++V    LL+   +    G+DS    V +EM+ A       T N ++ AY +   F 
Sbjct: 462 CVPDIVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFD 518

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               +   +    V PD+ T
Sbjct: 519 QAMAIYRRMLDAGVTPDLST 538



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
            E++    +E+    +KP +  +N++I  Y + G+  EA     EMK+  L+P   TY+ 
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            I +Y    M+ E    +K M  + C P+  TYN LI  F
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              PSL  YNS+++ YS+   F ++   L E+    + P   +++ +I AY +     E 
Sbjct: 671 GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 MK  G +PD ITYN  I  +A   +        K M+        +T  +++D 
Sbjct: 731 SRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDW 790

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           +      D+   F   L N    + +D  R+L E
Sbjct: 791 FCKLNRRDEANSFISNLRNLDPSVTKDEERRLLE 824



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  FN+  +I   C  G M+EA R F EM+ F L P +  YN+ I  Y+    F EA
Sbjct: 708 KPDIISFNT--VIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +  +  M +    P  +TY+ LI  + K    DE +
Sbjct: 766 IDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEAN 801



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 41/273 (15%)

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E FA   S  +   II    K G+ + A   L++++   +      Y  LI AY     Y
Sbjct: 177 EDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRY 236

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E  M  K ++ +GC P  ITYN+++  +                   +M +  S +  +
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYG------------------KMGMPWSKIAGL 278

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKNYMFSRLDDLGDDLASR 343
           +D+  + G+   +  +   + + R   +  L  + AEV+  +K   FS      + L   
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCR---RGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDV 335

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
            G++                 R    V++EME++    ++ T N ++ AY +        
Sbjct: 336 YGKSR--------------RPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
            L S++  + +KPD+ T   L      GF+ TG
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLS----GFEKTG 410



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK---IGKFNEALLFLNEMKEMNLSPQSD 210
           L+ E  RAF E+      P +   N+++  Y +   + K NE    LN +K+   +P   
Sbjct: 621 LLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE---ILNFIKDSGFTPSLT 677

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ L+  Y + + +++ +  L+ +   G  PD I++N +I  +   G +K     +  M
Sbjct: 678 TYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEM 737



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/268 (17%), Positives = 106/268 (39%), Gaps = 34/268 (12%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  ++A+  ++ M    + P L  YN+++   ++ G + ++   L EMK+    P   TY
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+ AY   K  + +    + +      P  +    L+  ++ + LL   E  +  +  
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           +      +T+ A++  Y    M+ K  +    +LN                +IK+  F+ 
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTNE----ILN----------------FIKDSGFTP 674

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
                + L     RTE                   + ++RE+ +  ++ ++ + N ++ A
Sbjct: 675 SLTTYNSLMYMYSRTE--------------HFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           Y +    K    + +E+    + PD++T
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVIT 748


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 39/339 (11%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A++  L    R ++  QV +  ++      N      +I  LC+ G + +A   F+ M
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMED-RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P++  YNS+IHG+      + ALL + EM      P   TY+ LI    K    
Sbjct: 398 IVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRA 457

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E +     MK   C+PD ITY+ LI  F     +      +  ML + +     T   +
Sbjct: 458 PEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTL 517

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           ++ Y N G++D  E+  + ++ S             +VY    +         D   ++G
Sbjct: 518 VEGYCNAGLVDDAERLLEEMVASDCS---------PDVYTYTSLV--------DGFCKVG 560

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           R  +V   R+L     ++ RG             + NV T   ++ A+ +         L
Sbjct: 561 R--MVEARRVLKR---MAKRG------------CQPNVVTYTALIDAFCRAGKPTVAYRL 603

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           L E+    V+P+++T    Y +   GF GTG LE  ++I
Sbjct: 604 LEEMVGNGVQPNVIT----YRSLIGGFCGTGDLEEARKI 638



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 2/304 (0%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           ++R   +  D ++++E  + N      +I  LC+   + EA   F +M+     P+   Y
Sbjct: 106 KARNTAKALDYFRSMECEK-NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTY 164

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N +I+G+ K+ K + A L L EMKE  L+P   TY  +I  + +    D      + M  
Sbjct: 165 NVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE 224

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           +GC P+ +TYN L+      GL+         M  + +     +   ++      G +D 
Sbjct: 225 NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDM 284

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
             K ++   N   P        L     K         L + +       ++V    L+ 
Sbjct: 285 ALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMD 344

Query: 358 HACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
             C     +    V+  ME      NV T + ++    K    +  + +   +  R ++P
Sbjct: 345 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 404

Query: 417 DIVT 420
           ++VT
Sbjct: 405 NVVT 408



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 143/391 (36%), Gaps = 61/391 (15%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R  +   R+R+I +   + KN     I  N F    +I  LC+ G +++A    +EM   
Sbjct: 29  RLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRES 88

Query: 169 ALKPSLEIYNSIIH--------------------------------GYSKIGKFNEALLF 196
              P   IYN +IH                                G  K  +  EA  +
Sbjct: 89  GPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTY 148

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +MK+    P   TY+ LI  + K        + LK MK  G +P+ +TY+ +I  F  
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPL 312
              +      ++ M+         T   +L      G++D+    +++  +R L      
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268

Query: 313 KEDLVRKLAEVYIKNYMFSRLDD--LGDDLASRIGRTELVWCL---RLLSHACLLSHRGI 367
            + L+  L +    +      +D   GD     +  + L+  L     L  AC L  +  
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK-- 326

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                 M       +V T   ++    K    +  + +L  +  R+  P+++T   L D 
Sbjct: 327 ------MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLID- 379

Query: 428 RRIGFDGTG----ALEMWKRIGFLFKTVEIN 454
              G   TG    A E++KR+  + + +E N
Sbjct: 380 ---GLCKTGQVRDAQEVFKRM--IVRGIEPN 405


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 38/329 (11%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+EG +E A   F +M+     P +  YNS+I G+ K+G  +E +    +
Sbjct: 256 FTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQ 315

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK+ +  P   TY+ LI  + K++   +    L  MK +G  P+ +TY+  I  F   G+
Sbjct: 316 MKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM 375

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L+     +  M    +     T  +++DA    G L +  K  + +L +   L       
Sbjct: 376 LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN------ 429

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
                +  Y  + LD L ++     GR                  +  + V R M +A V
Sbjct: 430 -----VVTYT-ALLDGLCEE-----GRM-----------------KEAEEVFRAMLNAGV 461

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             N  T   ++  ++K K+ ++ + +L E+  + +KPD+    +LY     G      LE
Sbjct: 462 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDL----LLYGTILWGLCNESRLE 517

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
             K +    K   INT+ ++       +F
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYF 546



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 1/258 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL++E +  F++M+     P +  YN++I+ + K  +  +A  FL+EMK   L P   TY
Sbjct: 304 GLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 363

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
              I A+ K  M  E       M+    +P+  TY  LI     AG L       + +L 
Sbjct: 364 STFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQ 423

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             + L   T  A+LD     G + + E+ ++ +LN+     ++    L   +IK      
Sbjct: 424 AGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 483

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILL 391
             D+  ++  +  + +L+    +L   C  S       ++ E++ + +  N      ++ 
Sbjct: 484 AKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD 543

Query: 392 AYLKMKDFKHLRVLLSEL 409
           AY K         LL E+
Sbjct: 544 AYFKSGQATEALTLLEEM 561



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 73/170 (42%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      ++  LCEEG M+EA   F+ M    + P+ E Y +++HG+ K  +   A  
Sbjct: 427 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 486

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EMKE  + P    Y  ++         +E  + +  +K  G + + + Y  L+  + 
Sbjct: 487 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 546

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +G         + ML   +     T  A++D     G++ +    + R+
Sbjct: 547 KSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRM 596



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 64/162 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC E  +EEA     E++   +  +  IY +++  Y K G+  EAL  L EM ++ 
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L     TY  LI    K  +  E       M   G  P+   Y  L+         +  +
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             +  ML K M        A++D  M  G L +      R++
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI 667



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 66/156 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    +I   C+ G + EA++  +E+    +K ++  Y +++ G  + G+  EA    
Sbjct: 394 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 453

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    ++P  +TY  L+  + K K  +     LK MK     PD + Y  ++      
Sbjct: 454 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNE 513

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
             L+  +     +    ++  +     ++DAY   G
Sbjct: 514 SRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 549



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 45/114 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+    E A + F EM    + P    Y ++I G  K G   EAL   + M E+ 
Sbjct: 611 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 670

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +      Y  LI          +    L  M   G  PD + Y  LI+++   G
Sbjct: 671 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALG 724


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 162/360 (45%), Gaps = 15/360 (4%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEA 158
           W + +    I+ +    + +Q  + +++++ +  E   ++  +   ++      GL++EA
Sbjct: 150 WYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEA 209

Query: 159 VRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
                EM+     +P +  Y+ +I    ++  FN+A   L++M    + P + TY+  I 
Sbjct: 210 FSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFID 269

Query: 218 AYGKYKMYDEIDMCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           AYGK KM+ E++  L  M+  DGC PD  T N  ++ F  +G L+ ME  Y+      + 
Sbjct: 270 AYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQ 329

Query: 277 LRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
               T   +LD+Y      +KM    ++ ++   S T +  ++V    + + +     ++
Sbjct: 330 PSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIV---IDAFGRAGNLKQM 386

Query: 334 DDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           + L   + S RI  + +  C  + ++        IDSV+  +E++ +  +    N ++ A
Sbjct: 387 EHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDA 446

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
           Y +++ F  ++ +L  +  R  KPD  T   +  A    +   G     K I  L  T E
Sbjct: 447 YGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARA----YSDGGMANHAKEIQELITTAE 502


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 150/362 (41%), Gaps = 49/362 (13%)

Query: 77  LNALIQRLNKKVSCPL--QILQHDGDWTKDHF---WAVIRFLKNSSRSRQIPQ----VFD 127
           LN L++     V+C L  ++L+  GD   D     ++++  +K      ++ +    + D
Sbjct: 171 LNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDD 230

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
            W N     +  +N   II   C++G ++ A R F+E++     P+LE Y ++I G+ K 
Sbjct: 231 RWGNGCVPNVVFYNV--IIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKA 288

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GKF      LNEM  M L+     ++ +I A  KY + D+    ++MM   GC PD  TY
Sbjct: 289 GKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTY 348

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI  F+C+G                                  G + + E+F +R   
Sbjct: 349 NILIN-FSCSG----------------------------------GRIKEAEEFLER-AK 372

Query: 308 SRTPLKEDL-VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            RT L        L   Y K   +    D+   +A    + +LV     +  +       
Sbjct: 373 ERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEID 432

Query: 367 IDSVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
           +  +VRE M    V  +    N+++    K   F   ++LLSE+   +++PD      L 
Sbjct: 433 VALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLV 492

Query: 426 DA 427
           D 
Sbjct: 493 DG 494



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F+ +    + P +  YN +I G  K GK  +A+ ++N+MK  N +P   T+  
Sbjct: 501 LDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHST 560

Query: 215 LIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           +I  Y K     ++D  LKM   M      P+ + Y  LI  F     + R E  +++M 
Sbjct: 561 VIDGYVKQH---DLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQ 617

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +  +     T   ++  +   G  +K   F++ +L
Sbjct: 618 SFNLEPNVVTYTILIGGFSKTGKPEKAASFFELML 652



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A+   ++M    + P  +IYN ++ G  K G+F  A L L+EM ++NL P +  Y
Sbjct: 429 GEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMY 488

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+  + +    D+     +++   G  P  + YN++I+     G +         M  
Sbjct: 489 ATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKI 548

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
                   T   ++D Y+    LD   K + +++  +
Sbjct: 549 ANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQK 585



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    +I    ++  ++ A++ F +M     KP++  Y S+I+G+ KI   + A    
Sbjct: 554 DEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVF 613

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             M+  NL P   TY  LI  + K    ++     ++M ++ C P+  T++ LI 
Sbjct: 614 RAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLIN 668



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 113/286 (39%), Gaps = 11/286 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II    + GL+++A    + M     +P +  YN +I+     G+  EA  FL  
Sbjct: 313 FNS--IIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLER 370

Query: 200 MKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            KE  L P   +Y  L+ AY   G Y M    DM  K+ +  G  PD ++Y   I     
Sbjct: 371 AKERTLLPNKFSYTPLMHAYCKQGDYVMAS--DMLFKIAE-TGDKPDLVSYGAFIHGSVA 427

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +       + M+ K +   +     ++      G     +     +L+        +
Sbjct: 428 GGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYM 487

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREM 374
              L + +I+N    +  +L + + S+ G    V    ++        +  D+V  V +M
Sbjct: 488 YATLVDGFIRNNELDKATELFEVVMSK-GIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKM 546

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           + A    +  T + ++  Y+K  D      +  ++  +  KP++V 
Sbjct: 547 KIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVA 592



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G M +AV    +M+     P    ++++I GY K    + AL    +M +  
Sbjct: 526 MIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQK 585

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y  LI  + K       +   + M+     P+ +TY +LI  F+  G  ++  
Sbjct: 586 YKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAA 645

Query: 265 GTYKSML 271
             ++ ML
Sbjct: 646 SFFELML 652



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +K + N      +I   C+   M  A + F+ M+ F L+P++  Y  +I G+SK GK  +
Sbjct: 584 QKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEK 643

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQA 218
           A  F   M   N  P   T+  LI  
Sbjct: 644 AASFFELMLMNNCLPNDTTFHYLING 669


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 145/360 (40%), Gaps = 21/360 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A++     S R ++  +V  +M  N     I  +NS  +I     +G+++EA+    +M 
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNS--LISAYARDGMLDEAMELKNQMA 376

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----- 221
               KP +  Y +++ G+ + GK   A+    EM+     P   T++  I+ YG      
Sbjct: 377 EKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFV 436

Query: 222 --YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
              K++DEI++C       G SPD +T+N L+  F   G+   + G +K M         
Sbjct: 437 DMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            T   ++ AY   G  ++    Y+R+L++           +     +  M+ + + +  +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 340 LA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           +   R    EL +C  L ++A       + S+  E+ S  +         ++L   K   
Sbjct: 550 MEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFLFKTVEINT 455
                   SEL  R   PDI T+  +   Y  R++       L+  K  GF       N+
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNS 669



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 8/276 (2%)

Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C+ G L +EA + F+EM+          YN+++  Y K  +  EA+  LNEM+    SP 
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPS 348

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI AY +  M DE       M   G  PD  TY  L+  F  AG ++     ++
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFE 408

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M          T  A +  Y N G    M K +  +  +   L  D+V    L  V+ +
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEI--NVCGLSPDIVTWNTLLAVFGQ 466

Query: 327 NYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           N M S +  +  ++  A  +   E    L      C    + + +V R M  A V  +++
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM-TVYRRMLDAGVTPDLS 525

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           T N +L A  +   ++    +L+E+     KP+ +T
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 142/330 (43%), Gaps = 33/330 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEME--GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I ML +EG +  A   F  ++  GF+L   +  Y S+I  ++  G++ EA+    +M+E
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSL--DVYSYTSLISAFANSGRYREAVNVFKKMEE 236

Query: 203 MNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
               P   TY+ ++  +GK    +++I   ++ MK DG +PD  TYN LI       L +
Sbjct: 237 EGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEKFYKRLLNSRTPLKE 314
                ++ M          T  A+LD Y           +L++ME      LN  +P   
Sbjct: 297 EAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEME------LNGFSP--- 347

Query: 315 DLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDS-- 369
            +V    L   Y ++ M     +L + +A +  + ++     LLS        G ++S  
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG---FERAGKVESAM 404

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---Y 425
            +  EM +A  + N+ T N  +  Y     F  +  +  E+    + PDIVT   L   +
Sbjct: 405 NIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVF 464

Query: 426 DARRIGFDGTGALEMWKRIGFLFKTVEINT 455
               +  + +G  +  KR GF+ +    NT
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNT 494



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/316 (17%), Positives = 136/316 (43%), Gaps = 2/316 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A I+   N  +   + ++FD   N+     +      ++ +  + G+  E    F+EM
Sbjct: 422 FNAFIKMYGNRGKFVDMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P  E +N++I  YS+ G F +A+     M +  ++P   TY+ ++ A  +  M+
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++ +  L  M+   C P+ +TY  L+  +A    +  M    + + +  +  R+  +  +
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           +       +L + E+ +  L           +  +  +Y +  M  + +++ D +  R  
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGF 660

Query: 346 RTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
              +     L+  H+        + ++RE+ +  ++ ++ + N ++ AY +    +    
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720

Query: 405 LLSELPTRHVKPDIVT 420
           + SE+    + PD++T
Sbjct: 721 IFSEMRDSGIVPDVIT 736



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 129/359 (35%), Gaps = 44/359 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           VI  L    R      +F+  +  +   ++ ++   +I      G   EAV  F++ME  
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQE-DGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 169 ALKPSLEIYNSIIHGYSKIGK------------------------------------FNE 192
             KP+L  YN I++ + K+G                                       E
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     EMK    S    TY+ L+  YGK     E    L  M+L+G SP  +TYN LI 
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS 357

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            +A  G+L         M  K       T   +L  +   G ++     ++ + N+    
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--- 369
                    ++Y     F  +  + D++       ++V    LL+   +    G+DS   
Sbjct: 418 NICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLA---VFGQNGMDSEVS 474

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            V +EM+ A       T N ++ AY +   F+    +   +    V PD+ T   +  A
Sbjct: 475 GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     PS+  YNS+++ +S+   F ++   L E+    + P   +Y+ +I AY +   
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTR 714

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             +       M+  G  PD ITYN  I  +A   + +   G  + M+        +T  +
Sbjct: 715 MRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNS 774

Query: 285 ILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAEVYIKNY 328
           I+D Y      D+ + F + L  L+   P  EDL  +L E  +K +
Sbjct: 775 IVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDL--RLLERIVKKW 818



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  +I   C    M +A R F EM    + P +  YN+ I  Y+    F EA
Sbjct: 696 KPDIISYNT--VIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEA 753

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-LDGCSP 242
           +  +  M +    P  +TY+ ++  Y K    DE  + ++ ++ LD  +P
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEAV+ F +ME   + P++  +N++I G    G+++EA +F  +M E  +
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L++   + K   +    LK M   G  P+ I YN LI  F  AG L +   
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 386

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K + L SST   ++  Y   G  D  E+  K +L+
Sbjct: 387 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 428



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +    W + +++ +  + +    +I   C+    EE    F EM    ++P+  +YN
Sbjct: 590 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 649

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I  Y + G+ + AL    +MK   +SP S TY  LI+        +E  +  + M+++
Sbjct: 650 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 709

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P+   Y  LI  +   G + ++E   + M +K +H    T   ++  Y   G + + 
Sbjct: 710 GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEA 769

Query: 299 EKFYKRLLN 307
                RLLN
Sbjct: 770 S----RLLN 774



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 33/301 (10%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++   S  ++  LCE G ++EA R  +E+ G         YN++I G     K +EA +F
Sbjct: 503 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 562

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM +  L P + TY  LI         +E        K +G  PD  TY+++I    C
Sbjct: 563 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID--GC 620

Query: 257 AGLLKRMEGT--YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
               +  EG   +  M++K +   +     ++ AY   G            L+    L+E
Sbjct: 621 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR-----------LSMALELRE 669

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW-CLRL-------LSHACLLSHRG 366
           D+  K   +   +  ++ L   G  + SR+   +L++  +R+         +  L+   G
Sbjct: 670 DMKHK--GISPNSATYTSLIK-GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 726

Query: 367 -------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                  ++ ++REM S  V  N  T  +++  Y +  +      LL+E+  + + PD +
Sbjct: 727 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 786

Query: 420 T 420
           T
Sbjct: 787 T 787



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 116 SSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R+ +  + FD  M KN++    N      +I   C  G +  A+   ++M+   + P+
Sbjct: 623 AERTEEGQEFFDEMMSKNVQP---NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 679

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y S+I G S I +  EA L   EM+   L P    Y  LI  YGK     +++  L+
Sbjct: 680 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLR 739

Query: 234 MMKLDGCSPDHITYNLLIQEFA 255
            M      P+ ITY ++I  +A
Sbjct: 740 EMHSKNVHPNKITYTVMIGGYA 761



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P + ++ + I+ + K GK  EA+   ++M+E  ++P   T++ +I   G    YDE 
Sbjct: 255 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 314

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAI 285
            M  + M   G  P  ITY++L++    A   KR+   Y   K M  K           +
Sbjct: 315 FMFKEKMVERGMEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTKKGFPPNVIVYNNL 371

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS--- 342
           +D+++  G L+K  +    +++    L       L + Y KN      + L  ++ S   
Sbjct: 372 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 431

Query: 343 --RIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
               G    V CL       L SH   DS +R
Sbjct: 432 NVNQGSFTSVICL-------LCSHLMFDSALR 456



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 145 IIGMLCEEGLMEEAVRA-FQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G   +A+   FQ + +GF +       N+++HG  + GK +EA     E+  
Sbjct: 476 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTS--NALLHGLCEAGKLDEAFRIQKEILG 533

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                   +Y+ LI      K  DE  M L  M   G  PD+ TY++LI
Sbjct: 534 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 582



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR-FLKNS---SRSRQI 122
           L++S+ E  +LN  I+  +  VS  L +       T   +  +I+ + KN    +  R +
Sbjct: 371 LIDSFIEAGSLNKAIEIKDLMVSKGLSL-------TSSTYNTLIKGYCKNGQADNAERLL 423

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            ++  +  N+     N+ +   +I +LC   + + A+R   EM    + P   +  ++I 
Sbjct: 424 KEMLSIGFNV-----NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 478

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G  K GK ++AL    +         + T + L+    +    DE     K +   GC  
Sbjct: 479 GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM 538

Query: 243 DHITYNLLIQEFACAG 258
           D ++YN LI    C G
Sbjct: 539 DRVSYNTLIS--GCCG 552



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 2/198 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            +K  +R+++I   + + K + K     N      +I    E G + +A+     M    
Sbjct: 336 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 395

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L  +   YN++I GY K G+ + A   L EM  +  +    ++  +I     + M+D   
Sbjct: 396 LSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSAL 455

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  M L   SP       LI      G   +    +   L K   + + T  A+L   
Sbjct: 456 RFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGL 515

Query: 290 MNFGMLDKMEKFYKRLLN 307
              G LD+  +  K +L 
Sbjct: 516 CEAGKLDEAFRIQKEILG 533


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEAV+ F +ME   + P++  +N++I G    G+++EA +F  +M E  +
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L++   + K   +    LK M   G  P+ I YN LI  F  AG L +   
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K + L SST   ++  Y   G  D  E+  K +L+
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +    W + +++ +  + +    +I   C+    EE    F EM    ++P+  +YN
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 662

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I  Y + G+ + AL    +MK   +SP S TY  LI+        +E  +  + M+++
Sbjct: 663 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 722

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P+   Y  LI  +   G + ++E   + M +K +H    T   ++  Y   G + + 
Sbjct: 723 GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEA 782

Query: 299 EKFYKRLLN 307
                RLLN
Sbjct: 783 S----RLLN 787



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 33/301 (10%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++   S  ++  LCE G ++EA R  +E+ G         YN++I G     K +EA +F
Sbjct: 516 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 575

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM +  L P + TY  LI         +E        K +G  PD  TY+++I    C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID--GC 633

Query: 257 AGLLKRMEGT--YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
               +  EG   +  M++K +   +     ++ AY   G            L+    L+E
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR-----------LSMALELRE 682

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW-CLRL-------LSHACLLSHRG 366
           D+  K   +   +  ++ L   G  + SR+   +L++  +R+         +  L+   G
Sbjct: 683 DMKHK--GISPNSATYTSLIK-GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 739

Query: 367 -------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                  ++ ++REM S  V  N  T  +++  Y +  +      LL+E+  + + PD +
Sbjct: 740 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 799

Query: 420 T 420
           T
Sbjct: 800 T 800



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 116 SSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R+ +  + FD  M KN++    N      +I   C  G +  A+   ++M+   + P+
Sbjct: 636 AERTEEGQEFFDEMMSKNVQP---NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y S+I G S I +  EA L   EM+   L P    Y  LI  YGK     +++  L+
Sbjct: 693 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLR 752

Query: 234 MMKLDGCSPDHITYNLLIQEFA 255
            M      P+ ITY ++I  +A
Sbjct: 753 EMHSKNVHPNKITYTVMIGGYA 774



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P + ++ + I+ + K GK  EA+   ++M+E  ++P   T++ +I   G    YDE 
Sbjct: 268 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 327

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAI 285
            M  + M   G  P  ITY++L++    A   KR+   Y   K M  K           +
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTKKGFPPNVIVYNNL 384

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS--- 342
           +D+++  G L+K  +    +++    L       L + Y KN      + L  ++ S   
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444

Query: 343 --RIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
               G    V CL       L SH   DS +R
Sbjct: 445 NVNQGSFTSVICL-------LCSHLMFDSALR 469



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 145 IIGMLCEEGLMEEAVRA-FQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G   +A+   FQ + +GF +       N+++HG  + GK +EA     E+  
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTS--NALLHGLCEAGKLDEAFRIQKEILG 546

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                   +Y+ LI      K  DE  M L  M   G  PD+ TY++LI
Sbjct: 547 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR-FLKNS---SRSRQI 122
           L++S+ E  +LN  I+  +  VS  L +       T   +  +I+ + KN    +  R +
Sbjct: 384 LIDSFIEAGSLNKAIEIKDLMVSKGLSL-------TSSTYNTLIKGYCKNGQADNAERLL 436

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            ++  +  N+     N+ +   +I +LC   + + A+R   EM    + P   +  ++I 
Sbjct: 437 KEMLSIGFNV-----NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 491

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G  K GK ++AL    +         + T + L+    +    DE     K +   GC  
Sbjct: 492 GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM 551

Query: 243 DHITYNLLIQEFACAG 258
           D ++YN LI    C G
Sbjct: 552 DRVSYNTLIS--GCCG 565



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 2/198 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            +K  +R+++I   + + K + K     N      +I    E G + +A+     M    
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L  +   YN++I GY K G+ + A   L EM  +  +    ++  +I     + M+D   
Sbjct: 409 LSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSAL 468

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  M L   SP       LI      G   +    +   L K   + + T  A+L   
Sbjct: 469 RFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGL 528

Query: 290 MNFGMLDKMEKFYKRLLN 307
              G LD+  +  K +L 
Sbjct: 529 CEAGKLDEAFRIQKEILG 546


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++  +  A++ F+EM+   LKP++  YNS+++G    GK NEA + L+EM   N
Sbjct: 309 LIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN 368

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI  Y K K+ +E       +   G +P+ IT+N L+  +   G ++   
Sbjct: 369 LKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF 428

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--PLKEDLV--RKL 320
              K ML K     +ST   ++  +   G   KME+  K LLN      +K D V    L
Sbjct: 429 LLQKVMLEKGFLPNASTYNCLIVGFCREG---KMEEV-KNLLNEMQCRGVKADTVTYNIL 484

Query: 321 AEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
              + +     +   L D++  + +  + L + + LL+  C+  + R   ++ ++ME   
Sbjct: 485 ISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNI-LLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 379 VRW-NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            RW NV T N+++  Y +    +    LL+E+  + + P+  T  I+
Sbjct: 544 -RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 12/275 (4%)

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            ++EM    + P+L  +N++I+G  K+GK N+A   +++MK     P   TY+ LI  Y 
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYC 276

Query: 221 KY----KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           K     KMY + D  LK M  +  SP+ +T+N+LI  F     L      ++ M ++ + 
Sbjct: 277 KMGRVGKMY-KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK 335

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLD 334
               T  ++++   N G L++ +     +L+S   LK +++    L   Y K  +     
Sbjct: 336 PTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN--LKPNVITYNALINGYCKKKLLEEAR 393

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--REMESAKVRWNVTTANIILLA 392
           +L D++  + G T  V     L H      +  ++ +  + M       N +T N +++ 
Sbjct: 394 ELFDNIGKQ-GLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVG 452

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + +    + ++ LL+E+  R VK D VT  IL  A
Sbjct: 453 FCREGKMEEVKNLLNEMQCRGVKADTVTYNILISA 487



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 138/315 (43%), Gaps = 18/315 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK---IGKFNEALLF 196
           FN+  +I  LC+ G + +A     +M+ +   P++  YN++I GY K   +GK  +A   
Sbjct: 233 FNT--VINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAI 290

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM E  +SP S T++ LI  + K +         + M+  G  P  +TYN L+     
Sbjct: 291 LKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCN 350

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G L   +     ML+  +     T  A+++ Y    +L++  + +  +       K+ L
Sbjct: 351 EGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNI------GKQGL 404

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-------SHRGIDS 369
              +       + + +   + +    +    E  +     ++ CL+           + +
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN 464

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           ++ EM+   V+ +  T NI++ A+ + K+ K    L+ E+  + +KP  +T  IL +   
Sbjct: 465 LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC 524

Query: 430 IGFDGTGALEMWKRI 444
           +  +   AL + K++
Sbjct: 525 MEGNLRAALNLRKQM 539



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G  C EG MEE      EM+   +K     YN +I  + +  +  +A   ++EM +  
Sbjct: 450 IVG-FCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ L+  Y             K M+ +G   + +TYN+LIQ +   G L+   
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDAN 568

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           G    ML K +    +T   I +  M  G L  +E
Sbjct: 569 GLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIE 603



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE+   ++A R   EM    LKPS   YN +++GY   G    AL    +M++  
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ LIQ Y +    ++ +  L  M   G  P+  TY ++ +E    G L  +E
Sbjct: 544 RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIE 603

Query: 265 G 265
           G
Sbjct: 604 G 604


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 10/373 (2%)

Query: 108 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A++     S RS++  +V  +M  N     I  +NS  +I     +GL+E+A+    +M 
Sbjct: 311 ALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNS--LISAYARDGLLEDALELKNQMV 368

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              +KP +  Y +++ G+ K GK   A+    EM+     P   T++ LI+ +G    + 
Sbjct: 369 EKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFT 428

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E+    + +K   CSPD +T+N L+  F   G+   + G +K M          T   ++
Sbjct: 429 EMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLI 488

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIG 345
            +Y   G  D+    YKR+L +           +     +  ++ + + +  ++   R  
Sbjct: 489 SSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCK 548

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
             EL +C  L ++A       + ++  E+ S  +         ++L   K          
Sbjct: 549 PNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERA 608

Query: 406 LSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
             EL  R   PDI T+  +   Y  R++       L+  KR GF   T  + T   ++ +
Sbjct: 609 FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGF---TPSLTTYNSLMYM 665

Query: 463 YGKGHFLRYCEEV 475
           Y +       EE+
Sbjct: 666 YSRSANFERSEEI 678



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 153/352 (43%), Gaps = 39/352 (11%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  ++   + + + +   Q+F+  +N   K  I  FN+  +I M    G   E ++ F++
Sbjct: 379 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA--LIKMHGNRGKFTEMMKVFED 436

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++ F   P +  +N+++  + + G  +E      EMK     P+ DT++ LI +Y +   
Sbjct: 437 IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGS 496

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D+     K M   G +PD  +YN ++   A  GL K+ E     M   R      T  +
Sbjct: 497 FDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCS 556

Query: 285 ILDAYMNFGMLDKM----EKFYKRLLNSRTPLKEDLV-----------RKLAEVYIKNYM 329
           +L AY N   +++M    E+ Y  ++  R  L + LV            + A + ++   
Sbjct: 557 LLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRG 616

Query: 330 FSRLDDLGDDLASRIGRTELVW-------CLR-------LLSHACLL-------SHRGID 368
           FS      + + S  GR ++V        C++       L ++  L+       +    +
Sbjct: 617 FSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSE 676

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            ++RE+ +  +R ++ + N ++ AY +    +    +LSE+      PDI+T
Sbjct: 677 EILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIIT 728



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 124/324 (38%), Gaps = 43/324 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK------- 189
           ++ +    +I      G   EAV  F++ME    KP+L  YN I++ Y K+G        
Sbjct: 198 VDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVG 257

Query: 190 -----------------------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
                                        + EA   L EMK    SP   TY+ L+  YG
Sbjct: 258 LVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYG 317

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K +   E    L+ M+ +GC P  +TYN LI  +A  GLL+        M+ K +     
Sbjct: 318 KSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVF 377

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +L  +   G      + ++ + N            L +++     F+ +  + +D+
Sbjct: 378 TYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDI 437

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKM 396
            +     ++V    LLS   +    G+DS    V +EM+ A       T N ++ +Y + 
Sbjct: 438 KTFQCSPDIVTWNTLLS---VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRC 494

Query: 397 KDFKHLRVLLSELPTRHVKPDIVT 420
             F     +   +    V PD+ +
Sbjct: 495 GSFDQAMAVYKRMLEAGVNPDLSS 518



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 11/319 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L + G +  A      +        +  Y S+I  ++  G++ EA++   +M+E+ 
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVG 230

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   TY+ ++  YGK  M ++++   +  MK  G +PD  TYN LI       L +  
Sbjct: 231 CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
            G  K M          T  A+LD Y       +  +  + +  +  P        L   
Sbjct: 291 AGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISA 350

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID----SVVREMESAKV 379
           Y ++ +     +L + +  +  + ++     LLS        G D     +  EM +   
Sbjct: 351 YARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSG---FEKAGKDKAAVQIFEEMRNEGC 407

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG--TG 436
           + N+ T N ++  +     F  +  +  ++ T    PDIVT   L     + G D   +G
Sbjct: 408 KPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSG 467

Query: 437 ALEMWKRIGFLFKTVEINT 455
             +  KR GF+ +    NT
Sbjct: 468 VFKEMKRAGFVPERDTFNT 486



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E +    +E+    ++P +  YN++I+ Y + G+  +A   L+EM+E   +P   TY+  
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732

Query: 216 IQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLI 251
           I +Y    M+ E ID+   M+K  GC P+  TYN ++
Sbjct: 733 IASYAADSMFVEAIDVVCYMIK-HGCKPNQSTYNSIV 768



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 58/141 (41%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     PSL  YNS+++ YS+   F  +   L E+    + P   +Y+ +I AY +   
Sbjct: 647 MKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR 706

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             +    L  M+  G +PD ITYN  I  +A   +          M+        ST  +
Sbjct: 707 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNS 766

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I+D Y      D+   F   L
Sbjct: 767 IVDWYCKLNRRDEASMFVNNL 787



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G M +A R   EM      P +  YN+ I  Y+    F EA+  +  M +  
Sbjct: 697 VIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHG 756

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCL-KMMKLD 238
             P   TY+ ++  Y K    DE  M +  + KLD
Sbjct: 757 CKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLD 791


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEAV+ F +ME   + P++  +N++I G    G+++EA +F  +M E  +
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L++   + K   +    LK M   G  P+ I YN LI  F  AG L +   
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 375

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K + L SST   ++  Y   G  D  E+  K +L+
Sbjct: 376 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 417



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +    W + +++ +  + +    +I   C+    EE    F EM    ++P+  +YN
Sbjct: 579 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 638

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I  Y + G+ + AL    +MK   +SP S TY  LI+        +E  +  + M+++
Sbjct: 639 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 698

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P+   Y  LI  +   G + ++E   + M +K +H    T   ++  Y   G + + 
Sbjct: 699 GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEA 758

Query: 299 EKFYKRLLN 307
                RLLN
Sbjct: 759 S----RLLN 763



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 33/301 (10%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++   S  ++  LCE G ++EA R  +E+ G         YN++I G     K +EA +F
Sbjct: 492 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 551

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM +  L P + TY  LI         +E        K +G  PD  TY+++I    C
Sbjct: 552 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID--GC 609

Query: 257 AGLLKRMEGT--YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
               +  EG   +  M++K +   +     ++ AY   G            L+    L+E
Sbjct: 610 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR-----------LSMALELRE 658

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW-CLRL-------LSHACLLSHRG 366
           D+  K   +   +  ++ L   G  + SR+   +L++  +R+         +  L+   G
Sbjct: 659 DMKHK--GISPNSATYTSLIK-GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 715

Query: 367 -------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                  ++ ++REM S  V  N  T  +++  Y +  +      LL+E+  + + PD +
Sbjct: 716 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 775

Query: 420 T 420
           T
Sbjct: 776 T 776



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 116 SSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R+ +  + FD  M KN++    N      +I   C  G +  A+   ++M+   + P+
Sbjct: 612 AERTEEGQEFFDEMMSKNVQP---NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 668

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y S+I G S I +  EA L   EM+   L P    Y  LI  YGK     +++  L+
Sbjct: 669 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLR 728

Query: 234 MMKLDGCSPDHITYNLLIQEFA 255
            M      P+ ITY ++I  +A
Sbjct: 729 EMHSKNVHPNKITYTVMIGGYA 750



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P + ++ + I+ + K GK  EA+   ++M+E  ++P   T++ +I   G    YDE 
Sbjct: 244 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 303

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAI 285
            M  + M   G  P  ITY++L++    A   KR+   Y   K M  K           +
Sbjct: 304 FMFKEKMVERGMEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTKKGFPPNVIVYNNL 360

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS--- 342
           +D+++  G L+K  +    +++    L       L + Y KN      + L  ++ S   
Sbjct: 361 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 420

Query: 343 --RIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
               G    V CL       L SH   DS +R
Sbjct: 421 NVNQGSFTSVICL-------LCSHLMFDSALR 445



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 145 IIGMLCEEGLMEEAVRA-FQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G   +A+   FQ + +GF +       N+++HG  + GK +EA     E+  
Sbjct: 465 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTS--NALLHGLCEAGKLDEAFRIQKEILG 522

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                   +Y+ LI      K  DE  M L  M   G  PD+ TY++LI
Sbjct: 523 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 571



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR-FLKNS---SRSRQI 122
           L++S+ E  +LN  I+  +  VS  L +       T   +  +I+ + KN    +  R +
Sbjct: 360 LIDSFIEAGSLNKAIEIKDLMVSKGLSL-------TSSTYNTLIKGYCKNGQADNAERLL 412

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            ++  +  N+     N+ +   +I +LC   + + A+R   EM    + P   +  ++I 
Sbjct: 413 KEMLSIGFNV-----NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 467

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G  K GK ++AL    +         + T + L+    +    DE     K +   GC  
Sbjct: 468 GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM 527

Query: 243 DHITYNLLIQEFACAG 258
           D ++YN LI    C G
Sbjct: 528 DRVSYNTLIS--GCCG 541



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 2/198 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            +K  +R+++I   + + K + K     N      +I    E G + +A+     M    
Sbjct: 325 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 384

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L  +   YN++I GY K G+ + A   L EM  +  +    ++  +I     + M+D   
Sbjct: 385 LSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSAL 444

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  M L   SP       LI      G   +    +   L K   + + T  A+L   
Sbjct: 445 RFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGL 504

Query: 290 MNFGMLDKMEKFYKRLLN 307
              G LD+  +  K +L 
Sbjct: 505 CEAGKLDEAFRIQKEILG 522


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 38/298 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++   C  G ++ A R    M    LKP+L  +NS+++G  K G+  +A    
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM +  L+P   +Y+ L+  Y K     E       M   G  PD +T+  LI     A
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+R  G  + M  + + +   T  A++D +   G LD      + +   R        
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCY 370

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             L   Y    M  R+D+  +                               +VREME+ 
Sbjct: 371 NALINGYC---MVGRMDEARE-------------------------------LVREMEAK 396

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRIG 431
            V+ +V T + IL AY K  D      L  ++    V PD +T    I +L + +R+G
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 86/173 (49%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++NE     +I   C++G +++A+ A +EM    ++PS+  YN++I+GY  +G+ +EA  
Sbjct: 329 QMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARE 388

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + EM+   + P   TY  ++ AY K           + M  +G  PD ITY+ LI+   
Sbjct: 389 LVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLC 448

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
               L      +K+M++  +     T  +++D +   G +++    +  ++ +
Sbjct: 449 EEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA 501



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 116/283 (40%), Gaps = 19/283 (6%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +  A R F  M    + P++  YN ++      G   EAL  L +M+     P + TY+ 
Sbjct: 138 LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNT 197

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ A+ +    D  +  + MM+  G  P+ +T+N ++     AG ++     +  M+ + 
Sbjct: 198 LVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEG 257

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSR 332
           +     +   ++  Y   G   +    +  +  +R  +  D+V    L  V  K     R
Sbjct: 258 LAPDGVSYNTLVGGYCKVGCSHEALSVFAEM--TRKGIMPDVVTFTSLIHVMCKAGNLER 315

Query: 333 LDDLGDDLASR------IGRTELV--WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
              L  ++  R      I  T L+  +C +      LL+       VREM   +++ +V 
Sbjct: 316 AVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA-------VREMRQCRIQPSVV 368

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             N ++  Y  +      R L+ E+  + VKPD+VT   +  A
Sbjct: 369 CYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSA 411



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 15/179 (8%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I +LCEE  + +A   F+ M    L+P    Y S+I G+ K G    AL   +EM +
Sbjct: 441 SSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVK 500

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-------------- 248
             + P   TY  LI    K     E    L  +  +   P +I Y+              
Sbjct: 501 AGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSV 560

Query: 249 -LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             L++ F   GL+   +  Y+S+L +  +L  S    ++  +   G + K   F+K++L
Sbjct: 561 LALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQML 619



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C +GLM EA + +Q +          +Y+ +IHG+ + G   +AL F  +M +   +P 
Sbjct: 567 FCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPN 626

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           S +   LI+   +  M  E D  ++ + L+ CS
Sbjct: 627 STSTISLIRGLFEKGMVVEADQVIQQL-LNCCS 658


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 161/360 (44%), Gaps = 15/360 (4%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEA 158
           W + +    I+ +    + +Q  + +++++ +  E   ++  +   ++      GL++EA
Sbjct: 95  WYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEA 154

Query: 159 VRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
                EM+     +P +  Y+ +I    ++  FN+A   L++M    + P + TY+  I 
Sbjct: 155 FSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFID 214

Query: 218 AYGKYKMYDEIDMCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           AYGK KM+ E++  L  M+  DGC PD  T N  ++ F  +G L+ ME  Y+      + 
Sbjct: 215 AYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQ 274

Query: 277 LRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
               T   +LD+Y      +KM    ++ ++   S T +  ++V    + + +     ++
Sbjct: 275 PSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIV---IDAFGRAGNLKQM 331

Query: 334 DDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           + L   + S RI  + +  C  + ++        IDSV+  +E++ +  +    N ++ A
Sbjct: 332 EHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDA 391

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
           Y +++ F  ++ +L  +  R  KPD  T    Y      +   G     K I  L  T E
Sbjct: 392 YGRLECFAEMKKVLGMMEQRGCKPDKTT----YRTMARAYSDGGMANHAKEIQELITTAE 447


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 159/397 (40%), Gaps = 42/397 (10%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  + AV+ F+EM     KP++  +N++I  +   GKF E +    ++K    SP   T+
Sbjct: 118 GKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTW 177

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  +G+  M  E+    K MK  G  P+  T+N LI  ++  G   +    YK ML 
Sbjct: 178 NTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLE 237

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             ++   S+  A+L A    G+  + EK    + + R    E     L   Y       R
Sbjct: 238 AGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIER 297

Query: 333 LDDLGDDLASRI--GRTELVWCLRLLSHAC-----------LLSHRGI------------ 367
           +  L +++ S I   R  L+  L L++  C            L  RG             
Sbjct: 298 MCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVS 357

Query: 368 -----------DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
                      + ++  M+      ++TT N ++  Y +  +F+    +L E+  + ++P
Sbjct: 358 IYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRP 417

Query: 417 DIVTIG-ILYDARRIG--FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCE 473
           DI++   ++Y   R G   D +  L   +  G     +  NT    +A Y          
Sbjct: 418 DIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNT---FIASYAADSMFVEAI 474

Query: 474 EVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
           +V   +  +  +  + TY +++D   K N ++    F
Sbjct: 475 DVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMF 511



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 153/352 (43%), Gaps = 39/352 (11%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  ++   + + + +   Q+F+  +N   K  I  FN+  +I M    G   E ++ F++
Sbjct: 107 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA--LIKMHGNRGKFTEMMKVFED 164

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++ F   P +  +N+++  + + G  +E      EMK     P+ DT++ LI +Y +   
Sbjct: 165 IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGS 224

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D+     K M   G +PD  +YN ++   A  GL K+ E     M   R      T  +
Sbjct: 225 FDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCS 284

Query: 285 ILDAYMNFGMLDKM----EKFYKRLLNSRTPLKEDLV-----------RKLAEVYIKNYM 329
           +L AY N   +++M    E+ Y  ++  R  L + LV            + A + ++   
Sbjct: 285 LLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRG 344

Query: 330 FSRLDDLGDDLASRIGRTELVW-------CLR-------LLSHACLL-------SHRGID 368
           FS      + + S  GR ++V        C++       L ++  L+       +    +
Sbjct: 345 FSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSE 404

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            ++RE+ +  +R ++ + N ++ AY +    +    +LSE+      PDI+T
Sbjct: 405 EILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIIT 456



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 123/311 (39%), Gaps = 7/311 (2%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +KP +  Y +++ G+ K GK   A+    EM+     P   T++ LI+ +G    + E+
Sbjct: 99  GIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEM 158

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               + +K   CSPD +T+N L+  F   G+   + G +K M          T   ++ +
Sbjct: 159 MKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISS 218

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-LGDDLASRIGRT 347
           Y   G  D+    YKR+L +           +     +  ++ + +  L +    R    
Sbjct: 219 YSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPN 278

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           EL +C  L ++A       + ++  E+ S  +         ++L   K            
Sbjct: 279 ELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFL 338

Query: 408 ELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG 464
           EL  R   PDI T+  +   Y  R++       L+  KR GF   T  + T   ++ +Y 
Sbjct: 339 ELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGF---TPSLTTYNSLMYMYS 395

Query: 465 KGHFLRYCEEV 475
           +       EE+
Sbjct: 396 RSANFERSEEI 406



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 58/141 (41%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     PSL  YNS+++ YS+   F  +   L E+    + P   +Y+ +I AY +   
Sbjct: 375 MKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR 434

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             +    L  M+  G +PD ITYN  I  +A   +          M+        ST  +
Sbjct: 435 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNS 494

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I+D Y      D+   F   L
Sbjct: 495 IVDWYCKLNRRDEASMFVNNL 515



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G M +A R   EM      P +  YN+ I  Y+    F EA+  +  M +  
Sbjct: 425 VIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHG 484

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCL-KMMKLD 238
             P   TY+ ++  Y K    DE  M +  + KLD
Sbjct: 485 CKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLD 519


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 129/281 (45%), Gaps = 38/281 (13%)

Query: 150 CEEGLME--EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           C  G+++     R FQEM+   ++   ++YN +I    +  K NE + FL +++   L  
Sbjct: 221 CRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVA 280

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             D+Y  L+ + GK+    E +  L+ MK  G  P+   YN L+  ++  G L++++ T 
Sbjct: 281 DRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQID-TV 339

Query: 268 KSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           K++L    M +   T   ++DAY   G++D++E  Y+ + +              ++   
Sbjct: 340 KTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRD-------------CDIRPN 386

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
            YM++R+  +  D           W             +G+  ++REM+ A V  +    
Sbjct: 387 TYMYARMITIYRDTGQ--------W------------QKGV-KLLREMQQAGVTPDAHVY 425

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N+I+  + + +  +  R+   ++    ++PD+V+   L DA
Sbjct: 426 NVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDA 466



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 8/206 (3%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV----FDMWKNIEKSRINEFNSQKIIG 147
           L+ +Q  G     H + VI  +    R+RQ+ Q     F M     +  +  +NS  +I 
Sbjct: 410 LREMQQAGVTPDAHVYNVI--INTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNS--LID 465

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C+ G   EA + + +M      P+ + +N +IHG  +  ++N+    + EM+   + P
Sbjct: 466 ACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFP 525

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY  L+  Y + +++ +   CL+ MK DG  P    Y+ L   +A  G+ ++     
Sbjct: 526 NVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVL 585

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFG 293
           ++M  + + +  + +  +++A+   G
Sbjct: 586 QTMEKENIEINLAMLNLLINAFSMAG 611



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 73/143 (51%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+A  AF +M+   ++P +  +NS+I    K G+  EA     +M     +P + T++ 
Sbjct: 438 LEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNI 497

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I   G++K +++++  ++ M+  G  P+ +TY  L+  +A A L +      ++M    
Sbjct: 498 VIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDG 557

Query: 275 MHLRSSTMVAILDAYMNFGMLDK 297
           M    +   A+ +AY   GM ++
Sbjct: 558 MGPSPTAYSALANAYAQLGMCEQ 580



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
            L   SR  Q+ Q+ D  K + +     IN+     +I      GLM+     +QEM   
Sbjct: 323 LLGGYSRKGQLQQI-DTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDC 381

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P+  +Y  +I  Y   G++ + +  L EM++  ++P +  Y+ +I  +G+ +  ++ 
Sbjct: 382 DIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQA 441

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            +    M+  G  PD +++N LI     AG
Sbjct: 442 RIAFFKMQDGGIEPDVVSWNSLIDACCKAG 471



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 35/157 (22%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G   EA    +EM+ + L+P+L+ YN+++ GYS+ G+                   
Sbjct: 292 LGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQ----------------- 334

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
                             +ID    +++  G S + ITY LLI  +A AGL+ R+E  Y+
Sbjct: 335 ------------------QIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQ 376

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            M    +   +     ++  Y + G   K  K  + +
Sbjct: 377 EMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREM 413



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+ E+ +   Q ME   ++ +L + N +I+ +S  G+  EA      +KE  L+    TY
Sbjct: 576 GMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITY 635

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             L++A  + +  DE+      M   GC PD    ++L   F
Sbjct: 636 TTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKDMLRSAF 677


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 140/339 (41%), Gaps = 39/339 (11%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A++  L    R ++  QV +  ++      N      +I  LC+ G + +A   F+ M
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMED-RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P++  YNS+IHG+      + ALL + EM      P   TY+ LI    K    
Sbjct: 279 IVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRA 338

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E +     MK   C+PD ITY+ LI  F     +      +  ML + +     T   +
Sbjct: 339 PEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTL 398

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           ++ Y N G++D  E+  + ++ S             +VY    +         D   ++G
Sbjct: 399 VEGYCNAGLVDDAERLLEEMVASDCS---------PDVYTYTSLV--------DGFCKVG 441

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           R  +V   R+L     ++ RG             + NV T   ++ A+ +         L
Sbjct: 442 R--MVEARRVLKR---MAKRG------------CQPNVVTYTALIDAFCRAGKPTVAYKL 484

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           L E+    V+P+++T    Y +   GF GTG LE  +++
Sbjct: 485 LEEMVGNGVQPNVIT----YRSLIGGFCGTGDLEEARKM 519



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 107/277 (38%), Gaps = 1/277 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + EA   F +M+     P+   YN +I+G+ K+ K + A L L EMKE  
Sbjct: 13  MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY  +I  + +    D      + M  +GC P+ +TYN L+      GL+    
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M  + +     +   ++      G +D   K ++   N   P        L    
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
            K         L + +       ++V    L+   C     +    V+  ME      NV
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            T + ++    K    +  + +   +  R ++P++VT
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 129/312 (41%), Gaps = 13/312 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   ++  LC+ G ++ A++ F++       P +  Y+++I G  K G+ +EA    
Sbjct: 146 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLF 205

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M+E +  P   T+  L+    K     E    L+ M+   C+P+ ITY+ LI      
Sbjct: 206 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 265

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G ++  +  +K M+ + +     T  +++  +     +D      + +  + T    D++
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM--TATGCLPDII 323

Query: 318 --RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVR 372
               L +   K       + L  D+ ++    +++    L+   C L    ID   ++  
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER--IDMARTLFD 381

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           +M    V  +V T + ++  Y           LL E+      PD+ T   L D    GF
Sbjct: 382 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD----GF 437

Query: 433 DGTGALEMWKRI 444
              G +   +R+
Sbjct: 438 CKVGRMVEARRV 449



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 19/331 (5%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W ++  +    ++ ++P+    +  ++K     NE+    +I   C+   +  A    +E
Sbjct: 10  WTIM--IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 67

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+   L P++  Y+++IHG+ +  K + A     +M E    P   TY+ L+    +  +
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG----LLKRMEGTYKSMLTKRMHLRSS 280
            DE    L  M+  G  PD  +Y+ L+      G     LK  E          + +  S
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV-VAYS 186

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLG 337
           T++A L      G LD+  K ++++  NS  P   D+V    L +   K         + 
Sbjct: 187 TLIAGL---CKTGRLDEACKLFEKMRENSCEP---DVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
           + +  R     ++    L+   C     R    V + M    +  NV T N ++  +   
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 300

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                  +L+ E+      PDI+T   L D 
Sbjct: 301 NGVDSALLLMEEMTATGCLPDIITYNTLIDG 331


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 1/266 (0%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R F++M G   KP++  YN +I    K G    A     EMK   L P + TY+ +I  Y
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           GK    D+     + MK   C PD ITYN LI  F   G L +    ++ M    +    
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            +   ++DA+    M+ +  KFY  +        E     L + Y K    S    L D+
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 340 LASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           ++       +V    L+   C +   +  + +  +M +A V  N+ +   ++  ++K K+
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKN 358

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGIL 424
                 LL E+  R +KPD++  G  
Sbjct: 359 MDRALELLDEMKGRGIKPDLLLYGTF 384



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 125/300 (41%), Gaps = 36/300 (12%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S+   F    +I  +C+EG +E A   F+EM+   L P    YNS+I GY K+G+ ++ +
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            F  EMK M+  P   TY+ LI  + K+    +     + MK  G  P+ ++Y+ L+  F
Sbjct: 189 YFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAF 248

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-------DKMEKF------ 301
               ++++    Y  M    +     T  +++DAY   G L       D+M +       
Sbjct: 249 CKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNV 308

Query: 302 --YKRLLNS-----RTPLKEDLVRKLAEV---------------YIKNYMFSRLDDLGDD 339
             Y  L++      R    E+L  K+                  ++K     R  +L D+
Sbjct: 309 VTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDE 368

Query: 340 LASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           +  R  + +L+     +   C L        V+ EM+   ++ N      ++ AY K ++
Sbjct: 369 MKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSEN 428



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++P+  + ++ +++S  + N  +   ++   C+E +M++A++ + +M    L P+   Y 
Sbjct: 218 KLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYT 277

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S++  Y KIG  ++A    +EM ++ +     TY  LI      +   E +     M   
Sbjct: 278 SLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTA 337

Query: 239 GCSPDHITYNLLIQEFACAGLLKR 262
           G  P+  +Y  LI  F  A  + R
Sbjct: 338 GVIPNLASYTALIHGFVKAKNMDR 361



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 61/134 (45%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P   +++++     +   F EAL   ++MK   + P++ + +GL+  + +    D +   
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            K M   G  P   TYN++I      G ++   G ++ M  + +   + T  +++D Y  
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 292 FGMLDKMEKFYKRL 305
            G LD    F++ +
Sbjct: 181 VGRLDDTVYFFEEM 194


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F+ A+     M E  
Sbjct: 406 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 465

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M+   C PD  +Y+ L+  +A A  L +M+
Sbjct: 466 IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMK 525

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                + ++R+   +  +  ++        L + EK +  L   R  L  +++  +  +Y
Sbjct: 526 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIY 585

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++ +   +  S I  +   +   +  ++ L      ++++ E++S+ VR + 
Sbjct: 586 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 645

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+    +KPD+VT  I 
Sbjct: 646 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 686



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL+E+AV   QEME   +KP +  Y ++I G  + GK + A++  +E
Sbjct: 298 YNS--LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDE 355

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY+ LI+ +G    + E+       +  G  PD +T+N L+  F   GL
Sbjct: 356 MVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGL 415

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              + G +K M          T V+++ +Y   G+ D   + YKR++ +           
Sbjct: 416 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGI--------- 466

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             +V   N + S L        +R GR E                   + +  EME    
Sbjct: 467 YPDVSTYNAVLSAL--------ARGGRWEQA-----------------EKLFAEMEERDC 501

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD--IVTIGILYDAR--RIGFDGT 435
           + +  + + +L AY   K    ++ L  ++ +  ++P   +V   +L +++   +     
Sbjct: 502 KPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 561

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             LE+ ++      +++IN    ++++YGK   +R  E++ S ++  +      TY +L+
Sbjct: 562 AFLELRQKRC----SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 617

Query: 496 DL 497
            +
Sbjct: 618 HM 619



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 166/387 (42%), Gaps = 48/387 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEM 203
           ++      G   +AV  F+ M    ++P++  YN ++H YSK+   + E +  +  MKE 
Sbjct: 160 LVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEH 219

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA------ 257
            ++P   TY+ LI    +  +Y E       MK  G  PD +T+N L+  +  A      
Sbjct: 220 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 279

Query: 258 -GLLKRME--GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +++ ME  G   S++T           +++ +Y+  G+L++              LK+
Sbjct: 280 IEVIQEMERVGCPPSVVTYN---------SLISSYVKDGLLEQA-----------VALKQ 319

Query: 315 DLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELV--WC-LRLLSHACLLSHRGID- 368
           ++  K  +  +  Y  + S LD  G   A+ +   E+V   C   L ++  L+   G+  
Sbjct: 320 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 379

Query: 369 ------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-I 421
                 +V  E  SA    ++ T N +L  + +      +  +  E+      P+  T +
Sbjct: 380 KFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 439

Query: 422 GILYDARRIG-FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
            ++    R G FD   A++++KR+       +++T   VL+   +G      E++++ +E
Sbjct: 440 SLISSYSRCGLFD--LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 497

Query: 481 PYSREKKRWTYQNLIDLVIKHNGKNLD 507
               +   ++Y +L+      N K LD
Sbjct: 498 ERDCKPDEYSYSSLLHAYA--NAKRLD 522



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+  A+  S   YNS++H YS++G   +    L E+K   + P   +Y+ +I AYG+   
Sbjct: 601 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 660

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       MK  G  PD +TYN+ ++ +    + +      + M+T+       T  +
Sbjct: 661 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNS 720

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I++ Y   G L   + F   L
Sbjct: 721 IVEGYCRNGKLTDAKIFVSNL 741



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 15/310 (4%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I ++   G + EA        G    P    Y +++  +S+ G+F +A+     M +  +
Sbjct: 130 IRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGV 185

Query: 206 SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            P   TY+ ++  Y K  + + E+   +  MK  G +PD  TYN LI       L K   
Sbjct: 186 QPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAA 245

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M          T  ++LD Y      D+  +  + +     P        L   Y
Sbjct: 246 QVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 305

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVV---REMESAKVR 380
           +K+ +  +   L  ++  +  + ++V    L+S    L   G ID+ +    EM     +
Sbjct: 306 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG---LDRAGKIDAAIVEYDEMVRNGCK 362

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGA 437
            N+ T N ++  +     F  +  +  E  +    PDIVT   L   +    +  + +G 
Sbjct: 363 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 422

Query: 438 LEMWKRIGFL 447
            +  K+ G++
Sbjct: 423 FKEMKKAGYI 432



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 72/173 (41%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA +AF E+        + + N+++  Y K     +    L+ MKE  ++  + TY+ 
Sbjct: 556 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 615

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y +    ++ +  L  +K  G  PD  +YN +I  +   G +K     +  M    
Sbjct: 616 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 675

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           +     T    + +Y++  M ++  +  + ++       E     + E Y +N
Sbjct: 676 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRN 728



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + EEA+   + M     KP+   YNSI+ GY + GK  +A +F++ + +++         
Sbjct: 695 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSKQEQQ 754

Query: 214 GLIQAYGKY 222
            L +   KY
Sbjct: 755 NLFEVIAKY 763


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++GL+++    F EM+G  + P +  Y+SIIHG    G++  A    NEM +  
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ LI A  K    +E +  LK+M   G SPD  TYN LI  F   G +    
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDAR 363

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             + SM +K +   + +   +++ Y   G + + +K Y+ ++
Sbjct: 364 DLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM 405



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 124 QVFDMWKNIEKSRINEFNSQK-----IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +V D W    + ++++   +      ++  LC+   + EA+  F  +E    +PS++I+N
Sbjct: 428 KVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFN 487

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I G  K  K   A    N +    L P   TY  +I    K    +        M+  
Sbjct: 488 CLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEK 547

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC+P+ +T+N L++ F     ++++    + M  K     +ST+  ++D      +L K 
Sbjct: 548 GCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVD------LLSKD 601

Query: 299 EKFYKRL 305
           EK+ + L
Sbjct: 602 EKYREYL 608



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 128/329 (38%), Gaps = 17/329 (5%)

Query: 150 CEEGLME--EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           C+ G ++  EA   F  +      P +  +N+++   +KI ++ + +     M  + L+P
Sbjct: 66  CKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T + LI  Y      D     L  M   G SP+ +T+  L++       +    G  
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185

Query: 268 KSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSR----TPLKEDLV--RK 319
           + M+  RM  R + +    +L+     G      K ++ +LN        +K +LV    
Sbjct: 186 RKMV--RMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCT 243

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
           + +   K+ +  +  +L  ++  R    ++V    ++   C      G   +  EM    
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V  NV T N+++ A  K    +    LL  +  R   PD  T   L D    GF   G +
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID----GFCLEGRI 359

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           +  + +    ++  I TD +   V   G+
Sbjct: 360 DDARDLFVSMESKGIETDAVSYNVLINGY 388



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 113/292 (38%), Gaps = 40/292 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I   C EG +++A   F  ME   ++     YN +I+GY K G+  EA    
Sbjct: 342 DTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLY 401

Query: 198 NEMKEMNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            EM    + P   TY+ L+   + + K+ D  ++    MK+   +P+  TYN+L+     
Sbjct: 402 REMMCKEIMPTVITYNTLLTGLFREGKVRDAWNL-FGEMKVHDLTPESCTYNILLDG--- 457

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
                         L K  HL  S  + +     N      ++ F   +         D 
Sbjct: 458 --------------LCKNNHL--SEAMELFHYLENHDFQPSIQIFNCLI---------DG 492

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREM 374
           + K  ++ I   +F+RL        S  G    V    ++ H    S +      +   M
Sbjct: 493 LCKARKIEIARELFNRL--------SHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGM 544

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           E      N+ T N ++  + +  + + +  LL E+  +   PD  TI I+ D
Sbjct: 545 EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVD 596


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F+ A+     M E  
Sbjct: 424 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 483

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M+   C PD  +Y+ L+  +A A  L +M+
Sbjct: 484 IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMK 543

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                + ++R+   +  +  ++        L + EK +  L   R  L  +++  +  +Y
Sbjct: 544 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIY 603

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++ +   +  S I  +   +   +  ++ L      ++++ E++S+ VR + 
Sbjct: 604 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+    +KPD+VT  I 
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL+E+AV   QEME   +KP +  Y ++I G  + GK + A++  +E
Sbjct: 316 YNS--LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDE 373

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY+ LI+ +G    + E+       +  G  PD +T+N L+  F   GL
Sbjct: 374 MVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGL 433

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              + G +K M          T V+++ +Y   G+ D   + YKR++ +           
Sbjct: 434 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGI--------- 484

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             +V   N + S L        +R GR E                   + +  EME    
Sbjct: 485 YPDVSTYNAVLSAL--------ARGGRWEQA-----------------EKLFAEMEERDC 519

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD--IVTIGILYDAR--RIGFDGT 435
           + +  + + +L AY   K    ++ L  ++ +  ++P   +V   +L +++   +     
Sbjct: 520 KPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 579

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             LE+ ++      +++IN    ++++YGK   +R  E++ S ++  +      TY +L+
Sbjct: 580 AFLELRQKRC----SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635

Query: 496 DL 497
            +
Sbjct: 636 HM 637



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 166/387 (42%), Gaps = 48/387 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEM 203
           ++      G   +AV  F+ M    ++P++  YN ++H YSK+   + E +  +  MKE 
Sbjct: 178 LVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEH 237

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA------ 257
            ++P   TY+ LI    +  +Y E       MK  G  PD +T+N L+  +  A      
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297

Query: 258 -GLLKRME--GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +++ ME  G   S++T           +++ +Y+  G+L++              LK+
Sbjct: 298 IEVIQEMERVGCPPSVVTYN---------SLISSYVKDGLLEQA-----------VALKQ 337

Query: 315 DLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELV--WC-LRLLSHACLLSHRGID- 368
           ++  K  +  +  Y  + S LD  G   A+ +   E+V   C   L ++  L+   G+  
Sbjct: 338 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397

Query: 369 ------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-I 421
                 +V  E  SA    ++ T N +L  + +      +  +  E+      P+  T +
Sbjct: 398 KFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 422 GILYDARRIG-FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
            ++    R G FD   A++++KR+       +++T   VL+   +G      E++++ +E
Sbjct: 458 SLISSYSRCGLFD--LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 481 PYSREKKRWTYQNLIDLVIKHNGKNLD 507
               +   ++Y +L+      N K LD
Sbjct: 516 ERDCKPDEYSYSSLLHAYA--NAKRLD 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+  A+  S   YNS++H YS++G   +    L E+K   + P   +Y+ +I AYG+   
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       MK  G  PD +TYN+ ++ +    + +      + M+T+       T  +
Sbjct: 679 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNS 738

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I++ Y   G L   + F   L
Sbjct: 739 IVEGYCRNGKLTDAKIFVSNL 759



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 15/310 (4%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I ++   G + EA        G    P    Y +++  +S+ G+F +A+     M +  +
Sbjct: 148 IRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGV 203

Query: 206 SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            P   TY+ ++  Y K  + + E+   +  MK  G +PD  TYN LI       L K   
Sbjct: 204 QPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAA 263

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M          T  ++LD Y      D+  +  + +     P        L   Y
Sbjct: 264 QVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 323

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVV---REMESAKVR 380
           +K+ +  +   L  ++  +  + ++V    L+S    L   G ID+ +    EM     +
Sbjct: 324 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG---LDRAGKIDAAIVEYDEMVRNGCK 380

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGA 437
            N+ T N ++  +     F  +  +  E  +    PDIVT   L   +    +  + +G 
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 438 LEMWKRIGFL 447
            +  K+ G++
Sbjct: 441 FKEMKKAGYI 450



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 72/173 (41%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA +AF E+        + + N+++  Y K     +    L+ MKE  ++  + TY+ 
Sbjct: 574 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 633

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y +    ++ +  L  +K  G  PD  +YN +I  +   G +K     +  M    
Sbjct: 634 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           +     T    + +Y++  M ++  +  + ++       E     + E Y +N
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRN 746



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + EEA+   + M     KP+   YNSI+ GY + GK  +A +F++ + +++         
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSKQEQQ 772

Query: 214 GLIQAYGKY 222
            L +   KY
Sbjct: 773 NLFEVIAKY 781


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F+ A+     M E  
Sbjct: 424 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 483

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M+   C PD  +Y+ L+  +A A  L +M+
Sbjct: 484 IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMK 543

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                + ++R+   +  +  ++        L + EK +  L   R  L  +++  +  +Y
Sbjct: 544 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIY 603

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++ +   +  S I  +   +   +  ++ L      ++++ E++S+ VR + 
Sbjct: 604 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+    +KPD+VT  I 
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 159/362 (43%), Gaps = 44/362 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL+E+AV   QEME   +KP +  Y ++I G  + GK + A++  +E
Sbjct: 316 YNS--LISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDE 373

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY+ LI+ +G    + E+      ++  G  PD +T+N L+  F   GL
Sbjct: 374 MVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGL 433

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              + G +K M          T V+++ +Y   G+ D   + YKR++ +           
Sbjct: 434 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGI--------- 484

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             +V   N + S L        +R GR E                   + +  EME    
Sbjct: 485 YPDVSTYNAVLSAL--------ARGGRWEQA-----------------EKLFAEMEERDC 519

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD--IVTIGILYDAR--RIGFDGT 435
           + +  + + +L AY   K    ++ L  ++ +  ++P   +V   +L +++   +     
Sbjct: 520 KPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 579

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             LE+ ++      +++IN    ++++YGK   +R  E++ S ++  +      TY +L+
Sbjct: 580 AFLELRQKRC----SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635

Query: 496 DL 497
            +
Sbjct: 636 HM 637



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 167/387 (43%), Gaps = 48/387 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEM 203
           ++      G   +AV  F+ M    ++P++  YN ++H YSK+   + E +  +  MKE 
Sbjct: 178 LVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEH 237

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA------ 257
            ++P   TY+ LI    +  +Y E       MK  G  PD +T+N L+  +  A      
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297

Query: 258 -GLLKRME--GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +++ ME  G   S++T           +++ +Y+  G+L++              LK+
Sbjct: 298 IEVIQEMERVGCPPSVVTYN---------SLISSYVKDGLLEQA-----------VALKQ 337

Query: 315 DLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELV--WC-LRLLSHACLLSHRGID- 368
           ++  K  +  +  Y  + S LD  G   A+ +   E+V   C   L ++  L+   G+  
Sbjct: 338 EMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397

Query: 369 ------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-I 421
                 +V  E+ SA    ++ T N +L  + +      +  +  E+      P+  T +
Sbjct: 398 KFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 422 GILYDARRIG-FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
            ++    R G FD   A++++KR+       +++T   VL+   +G      E++++ +E
Sbjct: 458 SLISSYSRCGLFD--LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 481 PYSREKKRWTYQNLIDLVIKHNGKNLD 507
               +   ++Y +L+      N K LD
Sbjct: 516 ERDCKPDEYSYSSLLHAYA--NAKRLD 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+  A+  S   YNS++H YS++G   +    L E+K   + P   +Y+ +I AYG+   
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       MK  G  PD +TYN+ ++ +    + +      + M+T+       T  +
Sbjct: 679 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNS 738

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I++ Y   G L   + F   L
Sbjct: 739 IVEGYCRNGKLTDAKIFVSNL 759



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 122/310 (39%), Gaps = 15/310 (4%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I ++   G + EA        G    P    Y +++  +S+ G+F +A+     M +  +
Sbjct: 148 IRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGV 203

Query: 206 SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            P   TY+ ++  Y K  + + E+   +  MK  G +PD  TYN LI       L K   
Sbjct: 204 QPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAA 263

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M          T  ++LD Y      D+  +  + +     P        L   Y
Sbjct: 264 QVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 323

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVV---REMESAKVR 380
           +K+ +  +   L  ++  +  + ++V    L+S    L   G ID+ +    EM     +
Sbjct: 324 VKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISG---LDRAGKIDAAIVEYDEMVRNGCK 380

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGA 437
            N+ T N ++  +     F  +  +  EL +    PDIVT   L   +    +  + +G 
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 438 LEMWKRIGFL 447
            +  K+ G++
Sbjct: 441 FKEMKKAGYI 450



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 72/173 (41%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA +AF E+        + + N+++  Y K     +    L+ MKE  ++  + TY+ 
Sbjct: 574 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 633

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y +    ++ +  L  +K  G  PD  +YN +I  +   G +K     +  M    
Sbjct: 634 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           +     T    + +Y++  M ++  +  + ++       E     + E Y +N
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRN 746



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + EEA+   + M     KP+   YNSI+ GY + GK  +A +F++ + +++         
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSKQEQQ 772

Query: 214 GLIQAYGKY 222
            L +   KY
Sbjct: 773 NLFEVLAKY 781


>gi|42408522|dbj|BAD09701.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409170|dbj|BAD10436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 393

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 25/264 (9%)

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y L +  F  AG L  ME   + M    + + S+T  A +  Y   G + +ME  Y+RL 
Sbjct: 133 YPLAVTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAASGTVPQMEAAYRRLK 192

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHR 365
            SR  +    +R +A  YI +  + +L +   D+   R     L+W L LLS A     +
Sbjct: 193 ASRLLVSVAAIRAMASAYISHRKYYKLGEFVTDVGLGRRAGGNLLWNLYLLSFAANFKMK 252

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
            +     +M +A    ++TT N+  +A+ KM  F  L +    +    V PD+VT G   
Sbjct: 253 SLQRAFLDMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMRRDGVAPDLVTHGCFV 312

Query: 426 DA---RRI------GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           DA   RR+       FD  GA E             + TD +V   +GKG F    E + 
Sbjct: 313 DAYLERRLARNLNFAFDRLGAGE-----------PVVATDAVVFEAFGKGGFHASSEVL- 360

Query: 477 SSLEPYSREKKRWTYQNLIDLVIK 500
             LE    E +RWTY  L+ + ++
Sbjct: 361 --LEATGGE-RRWTYYKLLGVYLR 381


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C++  +  A  AF+EM+   LKP++  YNS+I+G S  GK +EA+   
Sbjct: 272 NEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALW 331

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M  + L P   T++ LI  + K KM  E       +      P+ IT+N +I  F  A
Sbjct: 332 DKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKA 391

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--SRTPLKED 315
           G+++     + SML + +    ST   ++         ++  +  K+LLN      LK D
Sbjct: 392 GMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR----NQNVRAAKKLLNEMENYELKAD 447

Query: 316 LV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR- 372
           +V    L   + K+   S+ + L  ++ +   +   V    L+   C+  +      VR 
Sbjct: 448 VVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRT 507

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           +ME    R NV T N+++  + K    +    LL+E+  + + P+  T    YD  R+
Sbjct: 508 QMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTT----YDVVRL 561



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 45/308 (14%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           ++EM    ++P+L  +N  I+G  K GK N+A   + ++K    SP   TY+ LI  + K
Sbjct: 188 YKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCK 247

Query: 222 Y----KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
                KMY   D  LK M  +   P+ IT+N LI  F     +   +  ++ M  + +  
Sbjct: 248 KGSAGKMY-RADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKP 306

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDD 335
              T  ++++   N G LD+    + +++     LK ++V    L   + K  M      
Sbjct: 307 NIVTYNSLINGLSNNGKLDEAIALWDKMVG--LGLKPNIVTFNALINGFCKKKMIKEARK 364

Query: 336 LGDDLAS------------------RIGRTELVWCL-----------RLLSHACLLSH-- 364
           L DD+A                   + G  E  + L            + ++ CL++   
Sbjct: 365 LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLC 424

Query: 365 -----RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                R    ++ EME+ +++ +V T NI++  + K  +      LL E+    VKP+ V
Sbjct: 425 RNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHV 484

Query: 420 TIGILYDA 427
           T   L D 
Sbjct: 485 TYNTLMDG 492



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C++G   +A +   EM    +KP+   YN+++ GY   G    AL    +M++  
Sbjct: 454 LIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEG 513

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ LI+ + K    ++ +  L  M   G +P+  TY+++  E    G +  +E
Sbjct: 514 KRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFIPDIE 573

Query: 265 G 265
           G
Sbjct: 574 G 574


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 127/312 (40%), Gaps = 13/312 (4%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F++M G  + P++  YN +I    K G    A     +MK+M L+P   TY+ LI  YGK
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-CAGLLKRMEGTYKSMLTKRMHLRSS 280
             + DE     + MK  GC PD ITYN LI  F    G+L+  E  ++ M  K +     
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFE-FFREMKDKDLKPNVI 238

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +   ++DA    GM+    KF+  +        E     L +   K         L D++
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKVRWNVTTANIILLAYLKM 396
                   +V    LL   C     G+    + + R M  A V  N+     ++  ++K+
Sbjct: 299 LQEHVDLNIVTYTTLLDGLC---EEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKV 355

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
           +       L +E+  + +KPDI+  G +      G      LE  K I    K   I  +
Sbjct: 356 RSMDKAMELFNEMREKDIKPDILLWGTIV----WGLCSESKLEECKIIMTEMKESGIGAN 411

Query: 457 PLVLAVYGKGHF 468
           P++       +F
Sbjct: 412 PVIYTTLMDAYF 423



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I  LC+EG+M+ A++ F +M    L P+   Y+S+I    K G   EA +  
Sbjct: 236 NVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLA 295

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           +EM + ++     TY  L+    +  M +E +   + M   G +P+   Y  LI 
Sbjct: 296 DEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIH 350



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ GL++EA+  F  M    L+P++ +Y ++I G  K     +A    +EM++ N
Sbjct: 453 LIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKN 512

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P    Y  +I    K+  + E ++M  KMM++ G   D   Y  L+   +  G +++ 
Sbjct: 513 MIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEM-GIELDLYAYTSLVWGLSQCGQVQQA 571

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                 M+ K +    +    +L  +   G +D+
Sbjct: 572 RKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDE 605



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           M++A+  F EM    +KP + ++ +I+ G     K  E  + + EMKE  +      Y  
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTT 417

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ AY K     E    L+ M+  G     +T+  LI      GL++     +  M    
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHD 477

Query: 275 MHLRSSTMVAILDA 288
           +    +   A++D 
Sbjct: 478 LQPNVAVYTALIDG 491



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC E  +EE      EM+   +  +  IY +++  Y K G   EA+  L EM+++ 
Sbjct: 383 IVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA---CAGLLK 261
                 T+  LI    K  +  E       M      P+   Y  LI       C G  K
Sbjct: 443 TEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAK 502

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           ++   +  M  K M        A++D  +  G        ++  LN R  + E
Sbjct: 503 KL---FDEMQDKNMIPDKIAYTAMIDGNLKHGN-------FQEALNMRNKMME 545


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 14/285 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G +E A   F+ M     +P+  IY S+IHG++K G+  EA    +EM E  
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+  +I    K   +++     + M   GC P+ +TY  +IQ  +  G +    
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAF 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP---LKEDLVRKL 320
              K M+       S T + +LD +   G LD+  +    L   S +P   L   LV+ L
Sbjct: 421 RIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGL 480

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESA 377
            +      + + LDDL +   +     +   C  ++   C      +D   R    M S 
Sbjct: 481 CD---GGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGR--LDEACRIFQRMVSE 535

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLR--VLLSELPTRHVKPDIVT 420
             + + TT NI++    + ++ +  R   LL +L      PD VT
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVT 580



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   F +ME     P    YN++I G +K G   EAL  L+ M      P   TY  
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ +  K    +  +   ++M   G  P+ + Y  LI  FA +G +K     +  M+   
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                 T   ++D     G  ++  K ++ ++
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 2/204 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +IR    + R+      F++ K  ++ + +      ++  LC+ G+ E+A   F EM
Sbjct: 157 FNILIRSFARTRRADDAVTCFEIMKR-KRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEM 215

Query: 166 EGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
                + P   ++ +++    K  +  EA     +M++    P +  Y+ +I    K   
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    L  M    C P  +TY +L+     AG L+R E  ++ M        S    +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNS 308
           ++  +   G + +    +  ++ +
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEA 359



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +G ++ AV  FQEM      P    Y  II+G  K  K  +A  F +EM      P 
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPT 682

Query: 209 SDTYDGLIQAYGKYKMYDE----IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             TY  L+QA       DE     +  L   +L G     + Y+ LI  F  A  +    
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFEGMLARGELVG---SVMIYDALIHGFCKALKVDAAL 739

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             ++ M+++     + T  ++ D  +  G  +K ++  + +    +P
Sbjct: 740 KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSP 786



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 83  RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFN 141
           ++++ VS   ++++  G      +  +I  L    +     + FD M    +K  +  + 
Sbjct: 628 QVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYT 687

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           +  ++  LC  G ++EA   F+ M     L  S+ IY+++IHG+ K  K + AL    +M
Sbjct: 688 A--LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745

Query: 201 KEMNLSPQSDT----YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                 P + T    +DGL+++ GK +   E+   L+ M   G  P   T+  ++
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRS-GKTEKAQEL---LQEMAAGGSPPHAATFTAIL 796



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 98/266 (36%), Gaps = 35/266 (13%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDG 214
           ++AV  F+ M+    KP L  +  ++    K G   +A    +EM  M  + P    +  
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +++   K K   E       M+  G  PD I YN +I   A AG  +       +ML K 
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T   ++++    G L++ E+ ++ +  S       +   L   + K+       
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS------- 343

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
                     GR         +  AC        S+  EM  A  R +V T  +++    
Sbjct: 344 ----------GR---------MKEAC--------SLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVT 420
           K  +F+       E+     KP++VT
Sbjct: 377 KSGNFEQAAKSFEEMMRGGCKPNVVT 402



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 3/161 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++ AV+  +E         +  Y ++  G    G+ + A+    EM     +P 
Sbjct: 588 LCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPD 647

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           +  Y  +I    K K  ++       M   G  P   TY  L+Q    AG +      ++
Sbjct: 648 AAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFE 707

Query: 269 SMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLN 307
            ML  R  L  S M+  A++  +     +D   K ++ +++
Sbjct: 708 GMLA-RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMIS 747



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 1/145 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEM 203
           II  L +   +E+A + F EM G   KP++  Y +++      G  +EA   F   +   
Sbjct: 654 IINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            L      YD LI  + K    D      + M   G  P  +T   L      +G  ++ 
Sbjct: 714 ELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKA 773

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDA 288
           +   + M        ++T  AILD 
Sbjct: 774 QELLQEMAAGGSPPHAATFTAILDG 798



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 26/265 (9%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN +++       +++      EM +  ++P + +++ LI+++ + +  D+   C ++MK
Sbjct: 122 YNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMK 181

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-------KRMHLRSSTMVAIL--- 286
              C PD  T+ +L+     AG+ ++    +  M+        + +H   + MV  L   
Sbjct: 182 RKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH---TAMVRTLLKA 238

Query: 287 ----DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
               +A   FG ++K   F    +   T     ++  LA+          LD++   LA 
Sbjct: 239 KRVKEAREVFGQMEKC-GFPPDAIAYNT-----MIDGLAKAGHAQEALKVLDNM---LAK 289

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
               TE+ + + + S     +    + + R M ++  R N      ++  + K    K  
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
             L  E+     +PD++T  ++ D 
Sbjct: 350 CSLFDEMVEAGYRPDVITHTVMIDG 374


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 146/371 (39%), Gaps = 60/371 (16%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G +++A+    EM+   +KP +  YN++I G+ K+G   EA   L+EMK   
Sbjct: 225 LMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNG 284

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI    K    DE    LK M+ +GC PD ITYN LI     AGLL    
Sbjct: 285 CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG 344

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M +K  +    T   ++ A                            + K A V 
Sbjct: 345 RLFDRMKSKGCNPDVVTYSTLITA----------------------------LGKAARVE 376

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWN 382
               +F  ++ +G      I      +C  + +L  A  +     D +  EM    +  +
Sbjct: 377 SACVLFEEMESVG------IQPDLFTYCSIITVLGKAGQVDD--ADRLFSEMRGKGLSPD 428

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF-------DGT 435
           V T N  L +  +   FK  R +  ++    + PD+ T    YDA  +G        D  
Sbjct: 429 VITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVAT----YDALLLGLSKTKEVDDAC 484

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRW----TY 491
           G L+     G  F +++ +    +L  +G        +E +  L+ ++  K  W    +Y
Sbjct: 485 GLLKELIEQGCAFDSLKFDECLEILTSWGN------VDEAHELLQ-FANSKGLWPGASSY 537

Query: 492 QNLIDLVIKHN 502
             LID + K  
Sbjct: 538 NALIDALAKAG 548



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 21/305 (6%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K      +  +NS  ++  L + G  EEA   F+E++     P +  Y+ +I+   + GK
Sbjct: 2   KGFPSPNVVTYNS--LLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGK 59

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           +  AL  + EM+     P   TY+ L+   GK   +DE    L  M+ +GC PD  TYN 
Sbjct: 60  WEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNC 119

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI     AG L      +  M  +     + T  +++      G   K  +  + +    
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS--------RIGRTELVWCLRLLSHACL 361
            P          +V   + + + L   G+ + +        R GR         L  A  
Sbjct: 180 CP---------PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALG 230

Query: 362 LSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            + R  D+  ++ EM+   V+  V T N ++  + K+ D      LL E+     KPD+V
Sbjct: 231 KAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVV 290

Query: 420 TIGIL 424
           T   L
Sbjct: 291 TYSCL 295



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 166/439 (37%), Gaps = 57/439 (12%)

Query: 78  NALIQRLNKKVSCP-LQILQHD---GDWTKD--HFWAVIRFLKNSSR-SRQIPQVFDMWK 130
           N+L+  L K   C   Q+L  +     WT D   +  +I  L  + +    +  V +M  
Sbjct: 13  NSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQA 72

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
              K  +  +N+  ++  L + G  +EA+R   EM      P +  YN +I    K G+ 
Sbjct: 73  KGCKPNLWTYNT--LVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           +EA     EM+E    P + TY+ LI   GK     +    L+ M+  GC PD +TY+ L
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I      G   +    ++ M  +     S T  A++DA    G +D   +          
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE------ 244

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
            +KE  V+     Y  N + +    +GD          LV    LL              
Sbjct: 245 -MKERGVKPGVVTY--NALIAGFGKVGD----------LVEAYNLLD------------- 278

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
             EM+    + +V T + ++   +K         +L ++      PD +T   L      
Sbjct: 279 --EMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL------ 330

Query: 431 GFDGTGALEMWKRIGFLF---KTVEINTDPL----VLAVYGKGHFLRYCEEVYSSLEPYS 483
             +G G   +    G LF   K+   N D +    ++   GK   +     ++  +E   
Sbjct: 331 -INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 484 REKKRWTYQNLIDLVIKHN 502
            +   +TY ++I ++ K  
Sbjct: 390 IQPDLFTYCSIITVLGKAG 408



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 113/298 (37%), Gaps = 29/298 (9%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I  L + G  ++A+   +EME     P +  Y+S+I G  K G+  +A    
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLF 207

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EMK     P S T+  L+ A GK    D+    L  MK  G  P  +TYN LI  F   
Sbjct: 208 QEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKV 267

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK---- 313
           G L         M          T   ++   +    LD+  +  K++     P      
Sbjct: 268 GDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITY 327

Query: 314 EDLVRKLAEVYIKN---YMFSRLDDLG--------DDLASRIGRTELVWCLRLLSHACLL 362
             L+  L +  + N    +F R+   G          L + +G+   V        AC+L
Sbjct: 328 NTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARV------ESACVL 381

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                     EMES  ++ ++ T   I+    K         L SE+  + + PD++T
Sbjct: 382 --------FEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVIT 431



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II +L + G +++A R F EM G  L P +  YN+ ++   + G+F EA     +
Sbjct: 395 FTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED 454

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MKE  L P   TYD L+    K K  D+    LK +   GC+ D + ++  ++     G 
Sbjct: 455 MKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGN 514

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           +       +   +K +   +S+  A++DA    G
Sbjct: 515 VDEAHELLQFANSKGLWPGASSYNALIDALAKAG 548



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA    Q      L P    YN++I   +K G+ +EA   L ++KE    P   +Y
Sbjct: 513 GNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSY 572

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             LI A G+    D     L+ M   G      +Y+ L+++ 
Sbjct: 573 SSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614


>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 512

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 128/315 (40%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K++ +L   G    A R F +M+    +P+ E+Y ++I  
Sbjct: 143 QVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPALAHRLFADMQQQGCQPTPELYTALIAA 202

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  ++AL  L +MK   L  P   TY  LI+A      +D +D   K M   G +P
Sbjct: 203 YCRSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAP 262

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG +  ME    +ML          TM  IL  + N G +D MEK+
Sbjct: 263 NTVTQNIVLSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKW 322

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +   +  L   Y K  M+ ++                            
Sbjct: 323 YEKFRGYGIEPETRTLNILIGAYGKKRMYDKM---------------------------- 354

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W  +T N ++ A+ +  D K++    +++ +  +KPD  T 
Sbjct: 355 ------SAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTF 408

Query: 422 GILYDARRIGFDGTG 436
             L +    GF   G
Sbjct: 409 CCLIN----GFSKAG 419



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G ++   + +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 306 ILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEFMRKLA 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ AGL  ++ 
Sbjct: 366 FPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTFCCLINGFSKAGLFHKVV 425

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ + ++T    ++L A    G L +ME+ ++ + + +          L E
Sbjct: 426 GMVK--LAERLDVPANTSFHNSVLAACARAGDLVEMERVFRHMKHVQCAPDATTYSILVE 483

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELV 350
            Y K  M  ++ DL  +  S +  TELV
Sbjct: 484 AYRKEGMTDKVYDLQQENPSLVS-TELV 510



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++  A KP +   N I+  +   G+ +    +  + +   + P++ T + LI AYGK +M
Sbjct: 291 LDSTASKPDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGAYGKKRM 350

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           YD++   ++ M+         TYN +I+ FA AG  K ME T+  M ++ M   + T   
Sbjct: 351 YDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTFCC 410

Query: 285 ILDAYMNFGMLDK---MEKFYKRL 305
           +++ +   G+  K   M K  +RL
Sbjct: 411 LINGFSKAGLFHKVVGMVKLAERL 434


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 41/283 (14%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           + IE+  I  FN+  +I  +C+ G ME A      M G  + P++  Y+++I GY K+G 
Sbjct: 335 RGIEQD-IFTFNT--LIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGC 391

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           F EA+   ++MKE  + P   +Y+ LI  Y K   +D+  +  K M+  G   D +TYN 
Sbjct: 392 FEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNA 451

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI  +   G  K     +  M  + +     T  A++D+Y   GM   +   +      R
Sbjct: 452 LIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEF--KR 509

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
             LK D+V           ++S L D                C +     C L     D+
Sbjct: 510 AGLKPDVV-----------LYSSLIDS---------------CCK-----CGLVE---DA 535

Query: 370 VV--REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
           VV  +EM  A ++ N+ T N ++ AY +      L  + + +P
Sbjct: 536 VVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMP 578



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 3/187 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R +  +   +I +  + G  ++A+ A ++ME   LK  +  YN++I  Y K GK+ +A  
Sbjct: 408 RPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAC 467

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             ++MK   L P   TY  LI +Y K  M+ ++       K  G  PD + Y+ LI    
Sbjct: 468 LFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCC 527

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE- 314
             GL++      + M    +     T  +++DAY  +G  DK+E     + NS   + E 
Sbjct: 528 KCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGER 587

Query: 315 --DLVRK 319
             ++VRK
Sbjct: 588 SMEVVRK 594



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 111/291 (38%), Gaps = 35/291 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLF 196
           N +    ++      G   EA++ FQ M+    KP+L  YN+II    K G    +AL  
Sbjct: 234 NVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDI 293

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM++  + P   T++ LI    +  ++++       M+  G   D  T+N LI     
Sbjct: 294 FDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCK 353

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G ++       +M  K +     T   ++D Y   G  ++    Y  +  S        
Sbjct: 354 GGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVS 413

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              L ++Y K     R DD             L+ C                   ++ME 
Sbjct: 414 YNTLIDIYAK---LGRFDD------------ALIAC-------------------KDMER 439

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++ +V T N ++ AY K   +K    L  ++    + P+++T   L D+
Sbjct: 440 VGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDS 490



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 134/324 (41%), Gaps = 7/324 (2%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEME 166
           A++     S R R+  +VF   K     + N      II    + G+ +++A+  F EM+
Sbjct: 240 AMVSAYGRSGRCREALKVFQAMKK-AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQ 298

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              ++P    +NS+I   S+ G + ++     EM+   +     T++ LI A  K    +
Sbjct: 299 KEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQME 358

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                +  M+    SP+ +TY+ +I  +   G  +     Y  M    +     +   ++
Sbjct: 359 LAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLI 418

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL-ASR 343
           D Y   G  D      K +   R  LK D+V    L + Y K   +     L D +    
Sbjct: 419 DIYAKLGRFDDALIACKDM--ERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEG 476

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           +    L +   + S++    H+ + +V  E + A ++ +V   + ++ +  K    +   
Sbjct: 477 LVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAV 536

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
           VLL E+    ++P+IVT   L DA
Sbjct: 537 VLLQEMTQAGIQPNIVTYNSLIDA 560



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 135/354 (38%), Gaps = 43/354 (12%)

Query: 149 LCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSI-IHGYSKIGKFNEALLFLNEMKEMNLS 206
           L   G  E A++ ++ M +   L+       SI I    ++GK   AL   N  ++    
Sbjct: 173 LGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFG 232

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL-LKRMEG 265
                Y  ++ AYG+     E     + MK  GC P+ ITYN +I      G+ LK+   
Sbjct: 233 NNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALD 292

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            +  M  + +     T  +++      G+ +  ++ +  +   R  +++D+         
Sbjct: 293 IFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEM--QRRGIEQDI--------- 341

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
             + F+ L     D   + G+ EL                   S++  M    +  NV T
Sbjct: 342 --FTFNTL----IDAVCKGGQMELA-----------------ASIMTTMRGKNISPNVVT 378

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD--ARRIGF-DGTGALEMWK 442
            + ++  Y K+  F+    L  ++    V+PD V+   L D  A+   F D   A +  +
Sbjct: 379 YSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDME 438

Query: 443 RIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           R+G     V  N    ++  YGK    +    ++  ++         TY  LID
Sbjct: 439 RVGLKADVVTYNA---LIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALID 489


>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g48730, chloroplastic; Flags: Precursor
 gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 127/269 (47%), Gaps = 14/269 (5%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P +  Y+ +I  + ++  F++    L++M+   + P + TY+ LI AYGK KM+ E++ 
Sbjct: 218 QPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMES 277

Query: 231 CL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            L +M+  D C PD  T N  ++ F   G ++ ME  Y+   +  +     T   +LD+Y
Sbjct: 278 TLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSY 337

Query: 290 MNFG-------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
              G       +++ M+K++         +  D   +  ++    Y+F  +       + 
Sbjct: 338 GKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SE 391

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           RI  + +  C  + ++        I  V+R +E++ +R ++   N ++ AY +M+ F  +
Sbjct: 392 RIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEM 451

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIG 431
           + +L  +  +  KPD +T   +  A RI 
Sbjct: 452 KGVLELMEKKGFKPDKITYRTMVKAYRIS 480



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/149 (18%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E     +++ +   ++P++  +N ++  Y K G + +    +  M++ + S    TY
Sbjct: 306 GQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTY 365

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I A+G+     +++   ++M+ +   P  +T   L++ +  A    ++ G  + +  
Sbjct: 366 NVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIEN 425

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
             + L       ++DAY       +MEKF
Sbjct: 426 SDIRLDLVFFNCLVDAY------GRMEKF 448



 Score = 38.1 bits (87), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 52/130 (40%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+ +    ++  YN +I  + + G   +       M+   + P   T   L++AYG+   
Sbjct: 353 MQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASK 412

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            D+I   L+ ++      D + +N L+  +        M+G  + M  K       T   
Sbjct: 413 ADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRT 472

Query: 285 ILDAYMNFGM 294
           ++ AY   GM
Sbjct: 473 MVKAYRISGM 482


>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 511

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 51/374 (13%)

Query: 101 WTKDHFW--AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLM 155
           W     W  AV+  L ++ +  Q      +++ +      E   Q   K++ ML +    
Sbjct: 89  WKHKQLWPKAVLEALDDAIKGCQWQNALMIFELLRNQYWYEPRCQTYTKLLMMLSKCKQP 148

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDG 214
           +EA + ++ M    LKP++++  +++  Y + G F  A   + +MK + +  P   TY  
Sbjct: 149 KEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSV 208

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TK 273
           LI    K++ +D I+  L  M   G   + +TYN +I  +  AG+ ++ME +   M+  +
Sbjct: 209 LISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENE 268

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYK--RLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
                  T+ +++ +Y N G +DKMEK+Y   +L++ +  +K      + + Y K  M+ 
Sbjct: 269 NCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKT--FNMMIKSYGKAGMYD 326

Query: 332 RLDDLGDDLASRI------------------GRTE------------------LVWC--L 353
           ++  + D +  R                   G  E                  + +C  +
Sbjct: 327 KMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLV 386

Query: 354 RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
              S A L+  R IDS++R +E++ V  +    N I+ AY ++ D K +  L   +  R 
Sbjct: 387 NAYSKAGLI--RKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARK 444

Query: 414 VKPDIVTIGILYDA 427
            +PD  T   +  A
Sbjct: 445 CEPDRTTFTCMIQA 458



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           ++V  F E   FA  P++  YN++I  Y K G+  +       MK + + P S TY  L+
Sbjct: 329 KSVMDFMERRFFA--PTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLV 386

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            AY K  +  +ID  L+ ++      D   +N +I  +   G LK+M   + +M  ++  
Sbjct: 387 NAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCE 446

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
              +T   ++ AY   G+ +  +     +++++
Sbjct: 447 PDRTTFTCMIQAYNTQGITEAAKNLETMMISAK 479



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G +E+  + F+ M+   +KP+   Y S+++ YSK G   +    L  ++  +
Sbjct: 350 VIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSD 409

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I AYG+     ++      M+   C PD  T+  +IQ +   G+ +  +
Sbjct: 410 VILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNTQGITEAAK 469

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYM 290
                M++ +    SS M+  L +++
Sbjct: 470 NLETMMISAK---DSSGMLQFLQSFL 492


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 38/329 (11%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+EG +E A   F +M+     P +  YNS+I G+ K+G  +E +    +
Sbjct: 57  FTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQ 116

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK+ +  P   TY+ LI  + K++   +    L  MK +G  P+ +TY+  I  F   G+
Sbjct: 117 MKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM 176

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L+     +  M    +     T  +++DA    G L +  K  + +L +   L       
Sbjct: 177 LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN------ 230

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
                +  Y  + LD L ++     GR                  +  + V R M +A V
Sbjct: 231 -----VVTYT-ALLDGLCEE-----GRM-----------------KEAEEVFRAMLNAGV 262

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             N  T   ++  ++K K+ ++ + +L E+  + +KPD+    +LY     G      LE
Sbjct: 263 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDL----LLYGTILWGLCNESRLE 318

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
             K +    K   INT+ ++       +F
Sbjct: 319 EAKLLIGEIKESGINTNAVIYTTLMDAYF 347



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 1/258 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL++E +  F++M+     P +  YN++I+ + K  +  +A  FL+EMK   L P   TY
Sbjct: 105 GLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 164

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
              I A+ K  M  E       M+    +P+  TY  LI     AG L       + +L 
Sbjct: 165 STFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQ 224

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             + L   T  A+LD     G + + E+ ++ +LN+     ++    L   +IK      
Sbjct: 225 AGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 284

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILL 391
             D+  ++  +  + +L+    +L   C  S       ++ E++ + +  N      ++ 
Sbjct: 285 AKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD 344

Query: 392 AYLKMKDFKHLRVLLSEL 409
           AY K         LL E+
Sbjct: 345 AYFKSGQATEALTLLEEM 362



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      ++  LCEEG M+EA   F+ M    + P+ E Y +++HG+ K  +   A  
Sbjct: 228 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 287

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EMKE  + P    Y  ++         +E  + +  +K  G + + + Y  L+  + 
Sbjct: 288 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 347

Query: 256 CAG 258
            +G
Sbjct: 348 KSG 350



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    +I   C+ G + EA++  +E+    +K ++  Y +++ G  + G+  EA    
Sbjct: 195 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 254

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             M    ++P  +TY  L+  + K K  +     LK MK     PD + Y  ++
Sbjct: 255 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 45/114 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+    E A + F EM    + P    Y ++I G  K G   EAL   + M E+ 
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +      Y  LI          +    L  M   G  PD + Y  LI+++   G
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALG 478


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 35/285 (12%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I ML +    E A   FQ M      P+LE Y +++  YS+ G+F+ A   L +MK  
Sbjct: 165 KLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKAT 224

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI++      ++ +   ++ M   G  P+ +TYN LI  +  AG    
Sbjct: 225 PGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAE 284

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME T   MLT+       TM + L A+   G ++ ME  Y++   S           L +
Sbjct: 285 MESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLD 344

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            Y K  M+ ++                                   +V+  M+     W 
Sbjct: 345 SYGKAKMYEKMG----------------------------------AVMEYMQKYYYSWT 370

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + T N+++ A+ +  D + +  +   + +  +KP+ VT+  L  A
Sbjct: 371 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRA 415



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 42/190 (22%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN--------- 204
           LME+  RA        ++P++  YN++I  Y K G+F E    L EM   N         
Sbjct: 253 LMEDMARA-------GIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMN 305

Query: 205 --------------------------LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
                                     +SP   TY+ L+ +YGK KMY+++   ++ M+  
Sbjct: 306 STLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKY 365

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             S   +TYN++I  F  AG L++ME  ++ M ++R+     T+ +++ AY   G + K+
Sbjct: 366 YYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKI 425

Query: 299 EKFYKRLLNS 308
           +   + + NS
Sbjct: 426 KTVLRIVENS 435



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 53/115 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +E+    F+ M+   +KP+     S++  Y + G   +    L  ++  +
Sbjct: 377 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSD 436

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++     ++ L+ A+G+     E+   L +MKL  C PD +T   +I+ F   G+
Sbjct: 437 ITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWFLIKGI 491


>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Brachypodium distachyon]
          Length = 737

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 128/259 (49%), Gaps = 4/259 (1%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I+   C+   +EEA   F EM+   LKP++  YN ++  YS+  +       L EM ++
Sbjct: 394 EIVNAYCKCSQIEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDL 453

Query: 204 NLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            L P + +Y+ LI AYG+ K M ++ +     MK DG  P   +Y  L+  +A  G  ++
Sbjct: 454 GLQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEK 513

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
              TY  M  +R+     T  A+LD +   G  DK+ + ++ ++N +          + +
Sbjct: 514 AHITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTRVTFHMVLD 573

Query: 323 VYIKNYMFSRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
              K  ++ +  D+  +  + IG   T + + + + ++A    H  +  +++EM + +++
Sbjct: 574 GLAKYGLYVQARDVIYEFGN-IGLPPTTMTYNILMNTYAKGGQHYKLPQLLKEMSALELK 632

Query: 381 WNVTTANIILLAYLKMKDF 399
            +  T + ++ AY +++DF
Sbjct: 633 PDSVTYSTMIYAYARVRDF 651



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 37/300 (12%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           FQ M    +K SL++  S+I  +   G   EAL+  +EM+   +   +  Y+ ++ AY K
Sbjct: 342 FQRMNRKGVKWSLDVSASLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNEIVNAYCK 401

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF--------------------------- 254
               +E +     MK  G  P  +TYN+L+  +                           
Sbjct: 402 CSQIEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLGLQPNARS 461

Query: 255 -----ACAGLLKRM----EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                +  G  K+M    E  +  M    +   SS+  ++L AY   G  +K    Y  +
Sbjct: 462 YNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVDM 521

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSH 364
              R     +    L +++ +     +L +    + + ++G T + + + L   A    +
Sbjct: 522 KKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTRVTFHMVLDGLAKYGLY 581

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                V+ E  +  +     T NI++  Y K      L  LL E+    +KPD VT   +
Sbjct: 582 VQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLPQLLKEMSALELKPDSVTYSTM 641



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+    ++ + W+++  EK          ++  L + GL  +A     E     L P+  
Sbjct: 542 RAGDTDKLMETWRSMINEKVGGTRVTFHMVLDGLAKYGLYVQARDVIYEFGNIGLPPTTM 601

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y+K G+  +    L EM  + L P S TY  +I AY + + + +     K M
Sbjct: 602 TYNILMNTYAKGGQHYKLPQLLKEMSALELKPDSVTYSTMIYAYARVRDFSKAFYYHKQM 661

Query: 236 KLDGCSPDHITYNLLI 251
              G  PD  +Y  L+
Sbjct: 662 VRSGQVPDAKSYKKLL 677



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           ++ ++ G +K G + +A   + E   + L P + TY+ L+  Y K   + ++   LK M 
Sbjct: 568 FHMVLDGLAKYGLYVQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLPQLLKEMS 627

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
                PD +TY+ +I  +A      R+    K+    +  +RS     + DA        
Sbjct: 628 ALELKPDSVTYSTMIYAYA------RVRDFSKAFYYHKQMVRSGQ---VPDA-------- 670

Query: 297 KMEKFYKRLLNS 308
              K YK+LLN+
Sbjct: 671 ---KSYKKLLNT 679


>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
          Length = 492

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 35/279 (12%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I ML +    E+A + FQ M      P+L+ Y +++  YS+ G+F EA   L+ MK+ 
Sbjct: 146 KLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDT 205

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI++      ++++   L  M   G  P+ +TYN LI  +  AG    
Sbjct: 206 PGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAE 265

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME T   ML++       TM + L A+ + G ++ ME  Y++   S           L +
Sbjct: 266 MESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLD 325

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            Y K  M+ ++                                   +V+  M+     W 
Sbjct: 326 SYGKAKMYEKMG----------------------------------AVMEYMQKYYYSWT 351

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           + T N+++ A+ +  D + +  +   + +  +KP+ VT+
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTL 390



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 162 FQEMEGFALK-------PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           F EME   LK       P +   NS +  +   G+         + +   + P   TY+ 
Sbjct: 263 FAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNI 322

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ +YGK KMY+++   ++ M+    S   +TYN++I  F  AG L++ME  ++ M ++R
Sbjct: 323 LLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSER 382

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     T+ +++ AY   G + K++   + + NS   L       L + Y +    + + 
Sbjct: 383 IKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMW 442

Query: 335 DLGDDLASRIGRTELVWCLRLL 356
           D+ D +     + + V C  ++
Sbjct: 443 DILDLMKEHRCKPDKVTCTTMI 464



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 44/317 (13%)

Query: 156 EEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + A++ F+ M +    KP + IY  +I    K  +  +A      M +   +P   +Y  
Sbjct: 122 DSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTA 181

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           L+  Y +   + E  D+  +M    GC PD  TY++LI+    A   ++++     M   
Sbjct: 182 LVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARA 241

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +   + T   ++DAY   G   +ME    ++L+              +V+  N   S L
Sbjct: 242 GIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCK---------PDVWTMN---STL 289

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
              G       G+ E                  ++S   + +++ +  N+ T NI+L +Y
Sbjct: 290 RAFGSS-----GQIET-----------------MESCYEKFQASGIVPNIKTYNILLDSY 327

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI 453
            K K ++ +  ++  +   +    IVT  ++ DA    F   G LE  + I  L K+  I
Sbjct: 328 GKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA----FGRAGDLEQMEYIFRLMKSERI 383

Query: 454 NTDPL----VLAVYGKG 466
             + +    V+  YG+ 
Sbjct: 384 KPNCVTLCSVVRAYGRA 400



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 53/115 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +E+    F+ M+   +KP+     S++  Y + G+  +    L  ++  +
Sbjct: 358 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSD 417

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++     ++ L+ AYG+     E+   L +MK   C PD +T   +I+ F   G+
Sbjct: 418 ITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLIKGI 472


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 2/228 (0%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ +  ++ + +E   I  N  +   +I   C +GL+  A +    M    L+P++ 
Sbjct: 211 KSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVV 270

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +NS+IHG+ K GK +EA  F +EMK MN++P + TY+ LI  YG+    +      + M
Sbjct: 271 TFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEM 330

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G   D +TYN LI      G  K+     K +  + +   +ST  A++         
Sbjct: 331 MRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNS 390

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           D+  + YK ++ S     E   + L   ++KN  F    ++  D+ +R
Sbjct: 391 DRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFAR 438



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 129 WKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           ++ + + RI  N +    ++  LC+ G +E+AV   +EME   + P++  YN++I G+  
Sbjct: 187 YREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCN 246

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G  + A    N M +  L P   T++ LI  + K     E +     MK+   +P+ +T
Sbjct: 247 KGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVT 306

Query: 247 YNLLIQEFACAGLLKRMEGTYKSML 271
           YN LI  +   G        Y+ M+
Sbjct: 307 YNTLINGYGQVGNSNMAGKVYEEMM 331



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 2/160 (1%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  ++EM    + P+   +N ++    K GK  +A+  L EM+ + ++P   +Y+ LI 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            +    +         +M  +G  P+ +T+N LI  F   G L      +  M    +  
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTP 302

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            + T   +++ Y   G  +   K Y+ ++  R  +K D++
Sbjct: 303 NTVTYNTLINGYGQVGNSNMAGKVYEEMM--RNGVKADIL 340



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F  M+ +   P++E  N+ +       + + AL F  EM+   +SP S T++ ++ 
Sbjct: 148 ATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLS 207

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           A  K    ++    L+ M+  G +P+ ++YN LI      GLL         M    +  
Sbjct: 208 ALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEP 267

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL-DDL 336
              T  +++  +   G L +  +F+  +             K+  V      ++ L +  
Sbjct: 268 NVVTFNSLIHGFCKEGKLHEANRFFSEM-------------KVMNVTPNTVTYNTLINGY 314

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
           G     ++G + +                    V  EM    V+ ++ T N ++L   K 
Sbjct: 315 G-----QVGNSNMAG-----------------KVYEEMMRNGVKADILTYNALILGLCKE 352

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              K    L+ EL   ++ P+  T   L   +    +   A +++K +
Sbjct: 353 GKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSM 400


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 48/388 (12%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++R+  +   + K +E+      +  +NS  +I    ++GL+EEA +  +EME   ++P 
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNS--LISSYVKDGLLEEATQLKEEMEVKGIEPD 351

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +++ G  + GK + A+   NEM      P   TY+ LI+ +G    + E+ +   
Sbjct: 352 VITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFD 411

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            ++  G  PD +T+N L+  F   GL   + G +K M          T V+++ +Y   G
Sbjct: 412 EIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 471

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           + D+  + YKR++ +             ++   N + S L        +R GR E     
Sbjct: 472 LFDQAMEIYKRMIEAGI---------HPDISTYNAVLSAL--------ARGGRWEQA--- 511

Query: 354 RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
                         + +  EME+   R +  + + +L AY   K    ++ L  ++    
Sbjct: 512 --------------EKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAER 557

Query: 414 VKP--DIVTIGILYDARRIGFDGT--GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL 469
           ++    +V   +L +++      T    LE+ +R      +++IN    ++++YGK   +
Sbjct: 558 IESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRR----RCSLDINVLNAMISIYGKNGMV 613

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDL 497
           +  EE+ S ++  S      TY +L+ +
Sbjct: 614 KKVEEILSLMKESSINLSTATYNSLMHM 641



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 129/281 (45%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F++A+     M E  
Sbjct: 428 LLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAG 487

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M+     PD ++Y+ L+  +A A  L +M+
Sbjct: 488 IHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMK 547

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + +  +R+   +  +  ++        L   EK +  L   R  L  +++  +  +Y
Sbjct: 548 SLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIY 607

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++++   +  S I  +   +   +  ++ L      ++++ E++S++ R + 
Sbjct: 608 GKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDR 667

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+    + PDIVT  I 
Sbjct: 668 YSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           W  +  L +S R   IP             ++ +    +I       L +EA + F EM 
Sbjct: 228 WKEVLALVDSMRKDGIP-------------LDRYTYNTLISCCRRRALYKEAAKVFDEMR 274

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P     NS++  Y K  +++EA+  L EM++    P   TY+ LI +Y K  + +
Sbjct: 275 AAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLE 334

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           E     + M++ G  PD ITY  L+     AG +    GTY  ML
Sbjct: 335 EATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEML 379



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 36/198 (18%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK--------------- 189
           +I  L       +AV  F+ M    + P+L  YN ++H YSKI                 
Sbjct: 182 LISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSMRKD 241

Query: 190 ---------------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                                + EA    +EM+     P   T + L+  YGK + YDE 
Sbjct: 242 GIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEA 301

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              LK M+  GC P  +TYN LI  +   GLL+      + M  K +     T   ++  
Sbjct: 302 IGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSG 361

Query: 289 YMNFGMLDKMEKFYKRLL 306
               G +D     Y  +L
Sbjct: 362 LDRAGKIDAAIGTYNEML 379



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 2/169 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN  N+  +I +  + G++++       M+  ++  S   YNS++H YS++G   +    
Sbjct: 597 INVLNA--MISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENI 654

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L E+K     P   +Y+ +I AYG+     E       MK  G  PD +TYN+ ++ +  
Sbjct: 655 LTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVA 714

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             + +      + M+T        T   IL  Y + G +   + F   L
Sbjct: 715 NSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNL 763



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 110/284 (38%), Gaps = 11/284 (3%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-YDEIDM 230
           P    Y ++I   S+  +F +A+     M    + P   TY+ ++  Y K  + + E+  
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            +  M+ DG   D  TYN LI       L K     +  M          T+ ++LD Y 
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                D+     K +     P        L   Y+K+ +      L +++  +    +++
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 351 WCLRLLSHACLLSHRG-IDSVV---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
               L+S    L   G ID+ +    EM     + N+ T N ++  +     F  + ++ 
Sbjct: 354 TYTTLVSG---LDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 407 SELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFL 447
            E+ +    PD+VT   L   +    +  + +G  +  K+ G++
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYV 454



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/303 (18%), Positives = 116/303 (38%), Gaps = 56/303 (18%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEG 167
           +  + + SR     Q  +++K + ++ I+   S    ++  L   G  E+A + F EME 
Sbjct: 461 VSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMEN 520

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNE---------------------ALLFLN-------- 198
              +P    Y+S++H Y+   K ++                      L+ +N        
Sbjct: 521 LDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSD 580

Query: 199 ------EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                 E++    S   +  + +I  YGK  M  +++  L +MK    +    TYN L+ 
Sbjct: 581 TEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMH 640

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            ++  G  ++ E     + + R      +   ++ AY   G + +  + +  +  S   L
Sbjct: 641 MYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSG--L 698

Query: 313 KEDLVRK--LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
             D+V      + Y+ N MF    DL                  +++H C  + R  +++
Sbjct: 699 VPDIVTYNIFVKSYVANSMFEEAIDL---------------VRYMVTHGCKPNERTYNTI 743

Query: 371 VRE 373
           ++E
Sbjct: 744 LQE 746



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           ++R + ++   +I     +G M+EA R F EM+   L P +  YN  +  Y     F EA
Sbjct: 662 RARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEA 721

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAY 219
           +  +  M      P   TY+ ++Q Y
Sbjct: 722 IDLVRYMVTHGCKPNERTYNTILQEY 747


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 132/291 (45%), Gaps = 15/291 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N  +   +I  LC +   +EA+   Q M  EG    P +  +N++IHG+ K G+ ++A  
Sbjct: 226 NAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 285

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            +NEM +  + P   TY+ ++ A  K +  D+ ++ L+ M   G  PD +TY  +I  ++
Sbjct: 286 LINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYS 345

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKE 314
           C+G  K     ++ M +K +     T  + + +    G     E+ ++ +      P   
Sbjct: 346 CSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMP--- 402

Query: 315 DLVRK--LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--- 369
           DLV    L   Y     F+ +++L   +A + G      C  +L  A   + RG+     
Sbjct: 403 DLVSYSILLHGYATEGRFADMNNLFHSMADK-GIVANCHCFNILISA--HAKRGMMDEAM 459

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            V  EM+   VR +V T + ++ A+ +M          S++ +  ++P+ V
Sbjct: 460 LVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTV 510



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 18/300 (6%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  FNS   +  LC+ G  ++A   FQ M      P L  Y+ ++HGY+  G+F +    
Sbjct: 369 IVTFNS--FMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNL 426

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            + M +  +      ++ LI A+ K  M DE  +    M+  G  PD +TY+ LI  F  
Sbjct: 427 FHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCR 486

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G L      +  M++  +   +    +++  +   G L K ++    +++   P     
Sbjct: 487 MGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIP----- 541

Query: 317 VRKLAEVYIKNYMFS-----RLDDLGD--DLASRIG-RTELVWCLRLLSHACLLSH-RGI 367
             +   V+  + + S     R+ D  D  +L   IG R  +V    L+   CL+      
Sbjct: 542 --RPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 599

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V+  M S  +  +V T N ++  Y K        +L  E+  + VKP  VT  I+ D 
Sbjct: 600 FGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDG 659



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K I +  I  F+S  II  LC EG + +A   F  +     +P++  +NS+I GY  +
Sbjct: 536 MSKGIPRPNIVFFSS--IIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLV 593

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK  +A   L+ M  + + P   TY+ L+  Y K    D+  +  + M      P  +TY
Sbjct: 594 GKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTY 653

Query: 248 NLLIQEFACAGLLKRMEGTYKSML 271
           ++++     AG     +  +  M+
Sbjct: 654 SIVLDGLFHAGRTSAAKKMFHEMI 677



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/316 (18%), Positives = 120/316 (37%), Gaps = 70/316 (22%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G + +A+  F +M    L+P+  +Y+S+IHG+   G   +A   ++EM    
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539

Query: 205 LS------------------------------------PQSDTYDGLIQAYGKYKMYDEI 228
           +                                     P   T++ LI  Y      ++ 
Sbjct: 540 IPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 599

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M   G  PD +TYN L+  +  +G +      ++ ML K++   + T   +LD 
Sbjct: 600 FGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDG 659

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
             + G     +K +  +++S T +  D  + L +   +N       DL D+         
Sbjct: 660 LFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN-------DLTDE--------- 703

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                     A  L H+        + +   ++++T  N ++ A  K++  +    L + 
Sbjct: 704 ----------AITLFHK--------LGAMDCKFDITILNTVINALYKVRRREEANDLFAA 745

Query: 409 LPTRHVKPDIVTIGIL 424
           + T  + P++ T G++
Sbjct: 746 ISTSGLVPNVSTYGVM 761



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC   L +EA+  F ++     K  + I N++I+   K+ +  EA      +    L P 
Sbjct: 695 LCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPN 754

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  +I    K    +E D     M+  GC+P     N +I+
Sbjct: 755 VSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIR 798


>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 636

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 132/277 (47%), Gaps = 15/277 (5%)

Query: 153 GLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL+++A    +EM+     +P +  Y+ +I    ++  F++A   L+ M+ + +SP + T
Sbjct: 204 GLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTIT 263

Query: 212 YDGLIQAYGKYKMYDEIDMCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y+ LI AYGK KM++E++  L KM+    C PD  T N  ++ F  +G ++ ME  Y+  
Sbjct: 264 YNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKF 323

Query: 271 LTKRMHLRSSTMVAILDAYMNFG-------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               +     T   +LD+Y   G       +++ M+K++         +  D   +  ++
Sbjct: 324 QGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDL 383

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
               Y+F  +       + RI  + +  C  + ++        I+ V+R +E++ +  + 
Sbjct: 384 KQMEYLFRLMR------SERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDT 437

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              N ++ AY +M  F  ++ +L  +  +  +PD +T
Sbjct: 438 VFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKIT 474



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 130/330 (39%), Gaps = 55/330 (16%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGL--------MEEAVRAFQEM-EGFALKPSLEIYNSIIH 182
           IEK R    NS+K++     E L         E A++ F+ + E    +P   +Y  +I 
Sbjct: 105 IEKKR-GPTNSKKLLPRTVLEALHERITALRWESALKVFELLREQIWYRPYSGMYIKLIV 163

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCS 241
              K  +  +A      M         ++Y  L+ AYG+  + D+    L+ MK +  C 
Sbjct: 164 MLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQ 223

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD  TY++LI+         + +    +M +  +   + T   ++DAY    M ++ME  
Sbjct: 224 PDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEAT 283

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
             ++L+ +    +                                   VW +     A  
Sbjct: 284 LVKMLSQQNCEPD-----------------------------------VWTMNSTLRAFG 308

Query: 362 LSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           +S +   ++    + + A +  ++ T N++L +Y K  D+K +  ++  +   H    I+
Sbjct: 309 ISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTII 368

Query: 420 TIGILYDARRIGFDGTGALEMWKRIGFLFK 449
           T  I+ DA    F   G L   K++ +LF+
Sbjct: 369 TYNIVIDA----FGRAGDL---KQMEYLFR 391



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +++    F+ M    +KPS     S++  Y +  K  +    L  ++  +
Sbjct: 373 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSD 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++  +  ++ L+ AYG+   + E+   L +M+  G  PD ITY  +I+ ++  G+ K ++
Sbjct: 433 ITLDTVFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKGMTKHVK 492


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 2/194 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +SR+  +  ++ K +E +  R +      ++      GL+E+A+   ++M    +KP +
Sbjct: 296 GKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDV 355

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y +++ G+   GK   A+    EM+++   P   T++ LI+ YG    ++E+    K 
Sbjct: 356 YTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKE 415

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           +K+  CSPD +T+N L+  F   G+   + G ++ M   R      T   ++ AY   G 
Sbjct: 416 IKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGS 475

Query: 295 LDKMEKFYKRLLNS 308
            D+    YKR+L +
Sbjct: 476 FDQAMAAYKRMLEA 489



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 145/320 (45%), Gaps = 20/320 (6%)

Query: 115 NSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           N+ +     +VF+  + +  K  I  FN+  +I M  + G  EE V+ F+E++     P 
Sbjct: 367 NAGKEELAMEVFEEMRKVGCKPNICTFNA--LIKMYGDRGKFEEMVKVFKEIKVCKCSPD 424

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  +N+++  + + G  +E      EMK    +P+ DT++ LI AYG+   +D+     K
Sbjct: 425 IVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYK 484

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M   G SPD  TYN ++   A  GL ++ E     M          T  ++L AY N  
Sbjct: 485 RMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGR 544

Query: 294 MLDKM----EKFYKRLLNSRTPLKEDLVRKLAEVYI-----KNYMFSRLDDLGDDLASRI 344
            +++M    E+ Y   + +   L + LV   ++V +     + ++  R   +  D+ +  
Sbjct: 545 EVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSN 604

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
               +    +++  A        + ++  M  + +  ++T+ N ++  Y + ++F     
Sbjct: 605 AMLSIYGRKKMVPKA--------NEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQ 656

Query: 405 LLSELPTRHVKPDIVTIGIL 424
           +  E+  + ++PD+++  I+
Sbjct: 657 IFREILDKGIEPDVISYNIV 676



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 140/349 (40%), Gaps = 47/349 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +L + G +  A      +E    +  +  Y S+I  Y+   K+ +AL    +MKE+ 
Sbjct: 150 IVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG 209

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   TY+ ++  YGK  M + +I   ++ MK  G +PD  TYN LI       L +  
Sbjct: 210 CEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEA 269

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK--------FYKRLLNS 308
              ++ +        + T  A+LD Y           +L +ME          Y  L+++
Sbjct: 270 LDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSA 329

Query: 309 --RTPLKED---LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
             R  L ED   L RK+ +  IK  +++    L   + +  G+ EL              
Sbjct: 330 YVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNA--GKEELAM------------ 375

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
                 V  EM     + N+ T N ++  Y     F+ +  +  E+      PDIVT   
Sbjct: 376 -----EVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNT 430

Query: 424 L---YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK-GHF 468
           L   +    +  + +G  E  KR  F  +    NT   +++ YG+ G F
Sbjct: 431 LLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNT---LISAYGRCGSF 476



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 7/262 (2%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           Q+M+   L P L  YN++I        + EAL    E+K     P + TY+ L+  YGK 
Sbjct: 239 QDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKS 298

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
           +   E    LK M+ +   P  +TYN L+  +   GLL+      + M+ K +     T 
Sbjct: 299 RRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTY 358

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             +L  ++N G  +   + ++ +              L ++Y     F  +  +  ++  
Sbjct: 359 TTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKV 418

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKD 398
                ++V    LL+   +    G+DS    V  EM+ ++      T N ++ AY +   
Sbjct: 419 CKCSPDIVTWNTLLA---VFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGS 475

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
           F         +    V PD+ T
Sbjct: 476 FDQAMAAYKRMLEAGVSPDLST 497



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 152/352 (43%), Gaps = 24/352 (6%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +A++ F +M+    +P+L  YN+I++ Y K+G  + + +  + +MK   L+P   TY+ L
Sbjct: 197 DALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTL 256

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I       +Y+E     + +K+ G  PD +TYN L+  +  +   K      K M +   
Sbjct: 257 ISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSF 316

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                T  +++ AY+  G+L+      +++++    +K D       VY    + S   +
Sbjct: 317 RPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKG--IKPD-------VYTYTTLLSGFVN 367

Query: 336 LG-DDLASRI-GRTELVWC-LRLLSHACLLSHRG-------IDSVVREMESAKVRWNVTT 385
            G ++LA  +      V C   + +   L+   G       +  V +E++  K   ++ T
Sbjct: 368 AGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVT 427

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEMWKR 443
            N +L  + +      +  +  E+      P+  T   L  A  R   FD   A+  +KR
Sbjct: 428 WNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQ--AMAAYKR 485

Query: 444 IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           +     + +++T   VLA   +G      E+V + ++    +    TY +L+
Sbjct: 486 MLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLL 537



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L  SL  YNS+++ YS+   F+++     E+ +  + P   +Y+ +I AY +  M DE 
Sbjct: 630 GLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEA 689

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              ++ MK+    PD +TYN  I  +A   +        + M+ +      +T  +I+D 
Sbjct: 690 KRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDW 749

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           Y    + D+   F + L +    + ED   +L E   K +
Sbjct: 750 YCKLKLRDEACSFVQNLGDLDPQISEDEKSRLLERIAKKW 789



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 81/196 (41%), Gaps = 35/196 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS---KIGKFN---------- 191
           ++  L   GL E++ +   EM+    KP+   Y+S++H Y+   ++ + N          
Sbjct: 501 VLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGT 560

Query: 192 --------EALLFLN--------------EMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
                   + L+ +N              E ++  +SP   T + ++  YG+ KM  + +
Sbjct: 561 IKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKAN 620

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  M   G +    +YN L+  ++      + E  ++ +L K +     +   ++ AY
Sbjct: 621 EILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAY 680

Query: 290 MNFGMLDKMEKFYKRL 305
               M+D+ ++  + +
Sbjct: 681 CRNDMMDEAKRIIEEM 696


>gi|125562211|gb|EAZ07659.1| hypothetical protein OsI_29912 [Oryza sativa Indica Group]
          Length = 393

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 25/264 (9%)

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y L +  F  AG L  ME   + M    + + S+T  A +  Y   G + +ME  Y+RL 
Sbjct: 133 YPLAVTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAASGTVPQMEAAYRRLK 192

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHR 365
            SR  +    +R +A  YI +  + +L +   D+   R     L+W L LLS A     +
Sbjct: 193 ASRLLVSVADIRAMASAYISHRKYYKLGEFVTDVGLGRRAGGNLLWNLYLLSFAANFKMK 252

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
            +     +M +A    ++TT N+  +A+ KM  F  L +    +    V PD+VT G   
Sbjct: 253 SLQRAFLDMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMRRDGVAPDLVTHGCFV 312

Query: 426 DA---RRI------GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           DA   RR+       FD  GA E             + TD +V   +GKG F    E + 
Sbjct: 313 DAYLERRLARNLNFAFDRLGAGE-----------PVVATDAVVFEAFGKGGFHASSEVL- 360

Query: 477 SSLEPYSREKKRWTYQNLIDLVIK 500
             LE    E +RWTY  L+ + ++
Sbjct: 361 --LEATGGE-RRWTYYKLLGVYLR 381


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 139/360 (38%), Gaps = 45/360 (12%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  V+R L    R   +  + D       +R++      ++  L  EG  E A+R F E+
Sbjct: 150 FEMVVRALGREGRHDAVCALLDEMPLPPGARLDVRAYTTVLHALSREGRYERALRLFDEL 209

Query: 166 EGFALKPSLEIYNSIIHGYSKIGK------------------------------------ 189
               + P+   YN ++  Y ++G+                                    
Sbjct: 210 RREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGL 269

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            +EA+ F  ++K    +P   TY+ L+Q +GK   Y E    L+ M+  GC PD +TYN 
Sbjct: 270 VDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNE 329

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNS 308
           L   +A AG  +       +M+ K +   + T   I+ AY N G +D+    + R+  N 
Sbjct: 330 LAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNG 389

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
             P        L  +  K+   + L+ LG+   S      + W   L     +   RG++
Sbjct: 390 FIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLL----AVCGKRGME 445

Query: 369 S----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           S    V+  M+S KV     T N ++ AY +     +   +  E+      P + T   L
Sbjct: 446 SYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNAL 505



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 140/370 (37%), Gaps = 56/370 (15%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++ G     G  +EA +    M G  L P+   YN+I+  Y   GK +EAL   + MK+ 
Sbjct: 329 ELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKN 388

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P ++TY+ ++   GK   +  +   L  M   GC+P+ +T+N L+      G+   +
Sbjct: 389 GFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYV 448

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAE 322
               + M + ++ L   T   ++ AY   G      K Y  +  +   P           
Sbjct: 449 TRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPC---------- 498

Query: 323 VYIKNYMFSRLDDLGDDLASR----------IGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           +   N + + L   GD  A+R              ++ + L L  HA   +  GI+++ +
Sbjct: 499 LTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEK 558

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           E+    +  +      +++A  K +  + +     E+  R  KPD+V +  +        
Sbjct: 559 EVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSM-------- 610

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492
                                      L++Y K        E++ S+E         TY 
Sbjct: 611 ---------------------------LSIYAKNGLYSKAMEMFESIEQLGLSPDLITYN 643

Query: 493 NLIDLVIKHN 502
           +L+D+  K N
Sbjct: 644 SLMDMYAKSN 653



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 10/197 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  +A+  F+ +E   L P L  YNS++  Y+K  +  EA   LN ++   
Sbjct: 610 MLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQ 669

Query: 205 ---------LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
                    L P   +Y+ +I  + K  +  E    L  M  DG +P  ITY+ L+  +A
Sbjct: 670 SQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYA 729

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
              +          M+ +++     T   ++D+Y      +    F   +  + T   E 
Sbjct: 730 SREMFAEAREVVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVVAEADTNSDEK 789

Query: 316 LVRKLAEVYIKNYMFSR 332
           L+  L    I++  F R
Sbjct: 790 LLGALT-ARIESAQFGR 805



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F A++  L   SRS   P              N      ++ +  + G+     R  
Sbjct: 407 KSRFAAMLEMLGEMSRSGCTP--------------NRVTWNTLLAVCGKRGMESYVTRVL 452

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M+   ++   + YN++I  Y + G    A    +EM     +P   TY+ L+    + 
Sbjct: 453 EGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQ 512

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  MK +G  P+ ++Y+LL+Q  A  G    +E   K +    +      +
Sbjct: 513 GDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVIL 572

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSR 332
             ++ A      L+ +E+ ++  + +R   K DLV    +  +Y KN ++S+
Sbjct: 573 RTLVIANFKCRRLEGIERAFQE-VKARG-HKPDLVILNSMLSIYAKNGLYSK 622


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 163/407 (40%), Gaps = 53/407 (13%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +IG +C+EG M  A   F +M+   L P +  YNS+I GY K+G  +E+     E
Sbjct: 253 FTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEE 312

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK++   P   TY+ LI  + KY+   +    L  MK  G  P+ +TY+ LI       +
Sbjct: 313 MKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHM 372

Query: 260 LKRM---------------EGTYKS--------------------MLTKRMHLRSSTMVA 284
           L++                E TY S                    ML  ++     T   
Sbjct: 373 LQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTT 432

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LD     G + + E  ++ ++ +           L   +IKN       +L  ++  + 
Sbjct: 433 LLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKK 492

Query: 345 GRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
            + +L+    ++   C  S   ++    V+ EM++  +R N     I + AY K      
Sbjct: 493 IKPDLLLYGTIIWGLC--SQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVE 550

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
              LL E+    V+  IVT  +L D    G    G +E  + I +  +  + N  P  +A
Sbjct: 551 ALNLLQEMCDLGVEVTIVTFCVLID----GLCKKGLVE--EAIDYFARMADFNLQPNNVA 604

Query: 462 V-------YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKH 501
           V         K +++   ++++  ++  +    +  Y  LID  +KH
Sbjct: 605 VCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKH 651



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           + F++M G  +  S+  YN +I    K G    A    ++MK+M L+P   TY+ LI  Y
Sbjct: 238 KFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGY 297

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           GK  + DE     + MK  GC PD ITYN LI  F 
Sbjct: 298 GKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFC 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 2/171 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I  LC++GL+EEA+  F  M  F L+P+ + +  ++I G  K      A    +EM++ 
Sbjct: 573 LIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDK 632

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N+ P    Y  LI    K+K + E       M   G   D   Y  L+   +   L+++ 
Sbjct: 633 NMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQA 692

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                 M+ K +       + +L  Y   G +D+  + +  LL  + PL E
Sbjct: 693 RMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLK-KVPLDE 742



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 62/156 (39%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    +I   C+ G + +A++   EM    +  ++  Y +++ G  K G+  EA    
Sbjct: 391 NEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLF 450

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M +  ++P   TY  L+  + K K  +     LK +K     PD + Y  +I      
Sbjct: 451 RAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQ 510

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
             L+  E     M    +   S      +DAY   G
Sbjct: 511 NKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTG 546



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 135 SRINEFNSQK--------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +R+ +FN Q         +I  LC+   +E A + F EM+   + P    Y ++I G  K
Sbjct: 591 ARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLK 650

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
              F EAL   + M E+ +      Y  L+    +  +  +  M L  M   G  PD I
Sbjct: 651 HKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEI 709


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 123/308 (39%), Gaps = 42/308 (13%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N    R N F     +  LC++G M EA + FQEM  F L P    Y  II GY K+G  
Sbjct: 348 NFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDI 407

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           N+A  +L EM +  ++P   TY  LI A  K       +  L+ M L+G  PD +T+N L
Sbjct: 408 NKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCL 467

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F   G L++       M +  M   + T  A++ + +  G  ++ +     L+  R 
Sbjct: 468 IDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELI--RR 525

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE--LVWCLRLLSHACLLSHRGID 368
            L  D++                 D+ D  + +    E  LVW                 
Sbjct: 526 GLSPDVM--------------TFTDVIDGFSKKGNFEEAFLVW----------------- 554

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
                M    V+ +V T + +L  Y + +       L  ++    +KPD+V    LY+  
Sbjct: 555 ---SYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLV----LYNNL 607

Query: 429 RIGFDGTG 436
             GF   G
Sbjct: 608 IHGFCSAG 615



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+     + F +W  + +  +  +      ++   C    M+EA   F +M    LKP L
Sbjct: 542 SKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDL 601

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +YN++IHG+   G  N A   +  M +    P   T+      + K
Sbjct: 602 VLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAFALGFEK 648


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 43/313 (13%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  +C+ G ME A      M    + P++  Y+++I GY K+G F EA+   ++
Sbjct: 341 FTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHD 400

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MKE  + P   +Y+ LI  Y K   +D+     K M+  G   D +TYN LI  +   G 
Sbjct: 401 MKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGK 460

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM-LDKMEKF--------------YKR 304
            K   G +  M  + +     T  A++DAY   GM  D    F              Y  
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520

Query: 305 LLNS--RTPLKEDLV------------------RKLAEVYIKNYMFSRLDDLGDDLA--- 341
           L++S  +  L ED V                    L + Y +N     ++    ++    
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINV 580

Query: 342 -SRIG-RTELVWCLRLLSHACLLSHRGI---DSVVREMESAKVRWNVTTANIILLAYLKM 396
            +++G R+  + C  L S      H G+    SV  EM+   ++ NV T + IL A  + 
Sbjct: 581 FNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRC 640

Query: 397 KDFKHLRVLLSEL 409
              +   VLL ++
Sbjct: 641 SSLQEASVLLEQM 653



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 158/411 (38%), Gaps = 54/411 (13%)

Query: 52  SAPSLDYHSTKHTTLLVESYHEHQALNA-----LIQRLNKKVSCPLQILQHDGDWTKDHF 106
           SAPS+  +ST    LL+E +  HQ +       L++ L  +      +  ++    + H 
Sbjct: 139 SAPSMSGNST---ALLLEKW-SHQLVGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHL 194

Query: 107 ---WAVIRFLKNSSRSR--QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAV 159
              W+ +  +  S+  R  ++    D++   +K+    N +    ++      G   EA+
Sbjct: 195 RSEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREAL 254

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           + FQ M+    KP+L  YN+II    K G    +AL    EM++  + P   T++ LI  
Sbjct: 255 KVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAV 314

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             +  ++++       M+  G   D  TYN LI      G ++       SM  K +   
Sbjct: 315 CSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPN 374

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
             T   ++D Y   G  ++    Y  +  S           L ++Y K     R DD   
Sbjct: 375 VVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAK---LGRFDD--- 428

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                     L  C                   ++ME   ++ +V T N ++ AY K   
Sbjct: 429 ---------ALTAC-------------------KDMERVGLKADVVTYNALIDAYGKQGK 460

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF--DGTGALEMWKRIGF 446
           +K    L  ++    + P+++T   L DA  + G   D T     +KR G 
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGL 511



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 43/301 (14%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           + +E  RI  FNS  +I +     L E++ R F EM+   ++  +  YN++I    K G+
Sbjct: 299 EGVEPDRIT-FNS--LIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQ 355

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
              A   ++ M+  N+SP   TY  +I  YGK   ++E       MK  G  PD ++YN 
Sbjct: 356 MELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNT 415

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLN 307
           LI  +A  G         K M  +R+ L++  +   A++DAY   G        + ++  
Sbjct: 416 LIDIYAKLGRFDDALTACKDM--ERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKM-- 471

Query: 308 SRTPLKEDLVRKLAEVYIKNYM-FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
                        AE  + N + +S L D                     +++    H+ 
Sbjct: 472 ------------KAEGLVPNVLTYSALID---------------------AYSKAGMHQD 498

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             S+  E + A ++ +V   + ++ +  K    +   VLL E+    ++P+IVT   L D
Sbjct: 499 ATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLID 558

Query: 427 A 427
           A
Sbjct: 559 A 559



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G+ ++A   F E +   LKP + +Y+S+I    K G   +A++ L
Sbjct: 479 NVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLL 538

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            EM +  + P   TY+ LI AYG+    D ++     M ++
Sbjct: 539 QEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPIN 579


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 131/285 (45%), Gaps = 2/285 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I     +S+S    +VF   ++ +K + N      ++     EGL E+A   F++++  
Sbjct: 317 LINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEA 375

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P +  YN+++  YS+ G    A    + M+ M   P   +Y+ ++ AYG+  ++++ 
Sbjct: 376 GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 435

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               ++MK  G +P   ++ LL+  ++ AG + + E     M    +   +  + ++L+ 
Sbjct: 436 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 495

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           Y   G  +KME+    +     P        L  +Y +   F+R+++L   L +R    +
Sbjct: 496 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 555

Query: 349 LV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           +V W  R+ +++    +     V  EM  A    +  TA ++L A
Sbjct: 556 VVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSA 600



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 44/311 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  GL+E+A   F EM  +   PS  +YN+ I G  K G   +A+     MK     P +
Sbjct: 252 CTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPST 311

Query: 210 DTYDGLIQAYGKY-KMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            TY  LI  YGK  K Y    M LK+   M+   C P+  T+  L+  FA  GL ++ E 
Sbjct: 312 ATYTMLINLYGKASKSY----MALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEE 367

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-----------------S 308
            ++ +    +        A+++AY   G      + +  + +                  
Sbjct: 368 IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYG 427

Query: 309 RTPLKED------LVRKLA------------EVYIKNYMFSRLDDLGDDL-ASRIGRTEL 349
           R  L ED      ++++L               Y +    ++ +++ + +  S I     
Sbjct: 428 RAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTF 487

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           V    L  +  L     ++ V+  ME      +++T NI++  Y +   F  +  L   L
Sbjct: 488 VLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSL 547

Query: 410 PTRHVKPDIVT 420
           P R++ PD+VT
Sbjct: 548 PARNLIPDVVT 558



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 99/261 (37%), Gaps = 30/261 (11%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEID----MCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +LSP   T+D +I    + ++  + D    +C  ++      PD I YNLLI  +    L
Sbjct: 162 SLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSL 221

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            K+ E TY  +L  R      T   +L AY   G+L+K E  +  +     P    +   
Sbjct: 222 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVY-- 279

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-------VVR 372
               YI   M         ++  R+ R          ++  L++  G  S       V  
Sbjct: 280 --NAYIDGLMKGGDTQKAVEIFERMKRDRCQ--PSTATYTMLINLYGKASKSYMALKVFH 335

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM S K + N+ T   ++ A+ +    +    +  +L    ++PD+     L        
Sbjct: 336 EMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL-------- 387

Query: 433 DGTGALEMWKRIGFLFKTVEI 453
                +E + R GF +   EI
Sbjct: 388 -----MEAYSRAGFPYGAAEI 403



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 67/362 (18%), Positives = 129/362 (35%), Gaps = 66/362 (18%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE- 227
           +  P +  YN +I  Y +   + +A     E+ E    P  DTY  L++AY    + ++ 
Sbjct: 201 SFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKA 260

Query: 228 ----------------------IDMCLK------------MMKLDGCSPDHITYNLLIQE 253
                                 ID  +K             MK D C P   TY +LI  
Sbjct: 261 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 320

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +  A         +  M +++      T  A+++A+   G+ +K E+ +++L  +     
Sbjct: 321 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 380

Query: 314 EDLVRKLAEVYIKN---YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
                 L E Y +    Y  + +  L   +     R      +     A L  H    +V
Sbjct: 381 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL--HEDAQAV 438

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
              M+   +   + +  ++L AY +         +++++    +KPD   +  +      
Sbjct: 439 FEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM------ 492

Query: 431 GFDGTGALEMWKRIGFLFKTVE-------------INTDPLVLAVYGKGHFLRYCEEVYS 477
                  L ++ R+G   K  E             I+T  +++ +YG+  F    EE++ 
Sbjct: 493 -------LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFR 545

Query: 478 SL 479
           SL
Sbjct: 546 SL 547



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 54/128 (42%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M    +KP   + NS+++ Y ++G+F +    L  M++        TY+ LI  YG+  
Sbjct: 476 QMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 535

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +  ++   + +      PD +T+   I  ++      R    ++ M+    +    T  
Sbjct: 536 FFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAK 595

Query: 284 AILDAYMN 291
            +L A  N
Sbjct: 596 VLLSACSN 603


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 14/285 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G +E A   F+ M     +P+  IY S+IHG++K G+  EA    +EM E  
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+  +I    K   +++     + M   GC P+ +TY  +IQ  +  G +    
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAF 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP---LKEDLVRKL 320
              K M+       S T + +LD +   G LD+  +    L   S +P   L   LV  L
Sbjct: 421 RIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGL 480

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESA 377
            +      +   LDDL +   +     +   C  ++   C      +D   R    M S 
Sbjct: 481 CD---GGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR--LDEACRIFQRMVSE 535

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLR--VLLSELPTRHVKPDIVT 420
             + + TT NI++    + ++ +  R   LL +L      PD VT
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVT 580



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   F +ME     P    YN++I G +K G   EAL  L+ M      P   TY  
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ +  K    +  +   ++M   G  P+ + Y  LI  FA +G +K     +  M+   
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                 T   ++D     G  ++  K ++ ++
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 2/204 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +IR    + R+      F++ K  ++ + +      ++  LC+ G+ E+A   F EM
Sbjct: 157 FNILIRSFARTRRADDAVTCFEIMKR-KRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEM 215

Query: 166 EGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
                + P   ++ +++    K  +  EA     +M++    P +  Y+ +I    K   
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    L  M    C P  +TY +L+     AG L+R E  ++ M        S    +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNS 308
           ++  +   G + +    +  ++ +
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEA 359



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +G ++ AV  FQEM      P    Y  II+G  K+ K  +A  F +EM      P 
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPT 682

Query: 209 SDTYDGLIQAYGKYKMYDE----IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             TY  L+QA       DE     +  L   +L G     + Y+ LI  F  A  +    
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFESMLARGELVG---SVMIYDALIHGFCKALKVDAAL 739

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             ++ M+++     + T  ++ D  +  G  +K ++  + +    +P
Sbjct: 740 KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSP 786



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 83  RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFN 141
           ++++ VS   ++++  G      +  +I  L    +     + FD M    +K  +  + 
Sbjct: 628 QVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYT 687

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           +  ++  LC  G ++EA   F+ M     L  S+ IY+++IHG+ K  K + AL    +M
Sbjct: 688 A--LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745

Query: 201 KEMNLSPQSDT----YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                 P + T    +DGL+++ GK +   E+   L+ M   G  P   T+  ++
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRS-GKTEKAQEL---LQEMAAGGSPPHAATFTAIL 796



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 98/266 (36%), Gaps = 35/266 (13%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDG 214
           ++AV  F+ M+    KP L  +  ++    K G   +A    +EM  M  + P    +  
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +++   K K   E       M+  G  PD I YN +I   A AG  +       +ML K 
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T   ++++    G L++ E+ ++ +  S       +   L   + K+       
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS------- 343

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
                     GR         +  AC        S+  EM  A  R +V T  +++    
Sbjct: 344 ----------GR---------MKEAC--------SLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVT 420
           K  +F+       E+     KP++VT
Sbjct: 377 KSGNFEQAAKSFEEMMRGGCKPNVVT 402



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SR  ++ + F +  ++EK     +      +   LC+ G ++ AV+  +E         +
Sbjct: 554 SRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADV 613

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y ++  G    G+ + A+    EM     +P +  Y  +I    K K  ++       
Sbjct: 614 VAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDE 673

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNF 292
           M   G  P   TY  L+Q    AG +      ++SML  R  L  S M+  A++  +   
Sbjct: 674 MIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA-RGELVGSVMIYDALIHGFCKA 732

Query: 293 GMLDKMEKFYKRLLN 307
             +D   K ++ +++
Sbjct: 733 LKVDAALKLFEDMIS 747



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYD 213
           +E+A + F EM G   KP++  Y +++      G  +EA   F + +    L      YD
Sbjct: 664 LEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYD 723

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI  + K    D      + M   G  P  +T   L      +G  ++ +   + M   
Sbjct: 724 ALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAG 783

Query: 274 RMHLRSSTMVAILDA 288
                ++T  AILD 
Sbjct: 784 GSPPHAATFTAILDG 798



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 26/265 (9%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN +++       +++      EM +  ++P + +++ LI+++ + +  D+   C ++MK
Sbjct: 122 YNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMK 181

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-------KRMHLRSSTMVAIL--- 286
              C PD  T+ +L+     AG+ ++    +  M+        + +H   + MV  L   
Sbjct: 182 RKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH---TAMVRTLLKA 238

Query: 287 ----DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
               +A   FG ++K   F    +   T     ++  LA+          LD++   LA 
Sbjct: 239 KRVKEAREVFGQMEKC-GFPPDAIAYNT-----MIDGLAKAGHAQEALKVLDNM---LAK 289

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
               TE+ + + + S     +    + + R M ++  R N      ++  + K    K  
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
             L  E+     +PD++T  ++ D 
Sbjct: 350 CSLFDEMVEAGYRPDVITHTVMIDG 374


>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
 gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
          Length = 416

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+     +P++  YN I+  +++    N+      +++E  +SP   TY+
Sbjct: 144 LTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYN 203

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK+D C PD IT+NLLI  +      ++ME  +KS+L  
Sbjct: 204 GVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRS 263

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
           +      T  +++  Y    + DK E  +K++ + R          L  +Y      S+ 
Sbjct: 264 KEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICDCVSKA 323

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIILLA 392
            D+ DD+       ++     +L+  C+   H     ++    S  V  N +T  ++  A
Sbjct: 324 RDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYKLLYRA 383

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPD 417
           Y K K  + ++ LL  +    + P+
Sbjct: 384 YTKAKMKELVQKLLKHMDKDGIIPN 408



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 6/205 (2%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K+IE+ + N      I+    +   + +    F+++E   + P +  YN ++  Y 
Sbjct: 151 FEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYG 210

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L+ MK     P   T++ LI +YGK + +++++   K +      P   
Sbjct: 211 KNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLP 270

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD---KMEKFY 302
           T+N +I  +  A L  + E  +K M   R    + + +      M +G+ D   K    +
Sbjct: 271 TFNSMIVNYGKARLKDKAESVFKKMADMRY---TPSFITFESLIMMYGICDCVSKARDIF 327

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKN 327
             ++ S   +K   +  +  VY  N
Sbjct: 328 DDMVESGKEVKVSTLNAVLNVYCMN 352



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 2/184 (1%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           L+  +++R + QV  ++K++E+S ++   +    ++    + G++ E       M+    
Sbjct: 171 LRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQC 230

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP +  +N +I  Y K   F +       +      P   T++ +I  YGK ++ D+ + 
Sbjct: 231 KPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAES 290

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             K M     +P  IT+  LI  +     + +    +  M+     ++ ST+ A+L+ Y 
Sbjct: 291 VFKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYC 350

Query: 291 NFGM 294
             G+
Sbjct: 351 MNGL 354


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 131/285 (45%), Gaps = 2/285 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I     +S+S    +VF   ++ +K + N      ++     EGL E+A   F++++  
Sbjct: 279 LINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEA 337

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P +  YN+++  YS+ G    A    + M+ M   P   +Y+ ++ AYG+  ++++ 
Sbjct: 338 GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 397

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               ++MK  G +P   ++ LL+  ++ AG + + E     M    +   +  + ++L+ 
Sbjct: 398 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 457

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           Y   G  +KME+    +     P        L  +Y +   F+R+++L   L +R    +
Sbjct: 458 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 517

Query: 349 LV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           +V W  R+ +++    +     V  EM  A    +  TA ++L A
Sbjct: 518 VVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSA 562



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 44/311 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  GL+E+A   F EM  +   PS  +YN+ I G  K G   +A+     MK     P +
Sbjct: 214 CTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPST 273

Query: 210 DTYDGLIQAYGKY-KMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            TY  LI  YGK  K Y    M LK+   M+   C P+  T+  L+  FA  GL ++ E 
Sbjct: 274 ATYTMLINLYGKASKSY----MALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEE 329

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-----------------S 308
            ++ +    +        A+++AY   G      + +  + +                  
Sbjct: 330 IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYG 389

Query: 309 RTPLKED------LVRKLA------------EVYIKNYMFSRLDDLGDDL-ASRIGRTEL 349
           R  L ED      ++++L               Y +    ++ +++ + +  S I     
Sbjct: 390 RAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTF 449

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           V    L  +  L     ++ V+  ME      +++T NI++  Y +   F  +  L   L
Sbjct: 450 VLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSL 509

Query: 410 PTRHVKPDIVT 420
           P R++ PD+VT
Sbjct: 510 PARNLIPDVVT 520



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 99/261 (37%), Gaps = 30/261 (11%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEID----MCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +LSP   T+D +I    + ++  + D    +C  ++      PD I YNLLI  +    L
Sbjct: 124 SLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSL 183

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            K+ E TY  +L  R      T   +L AY   G+L+K E  +  +     P    +   
Sbjct: 184 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVY-- 241

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-------VVR 372
               YI   M         ++  R+ R          ++  L++  G  S       V  
Sbjct: 242 --NAYIDGLMKGGDTQKAVEIFERMKRDRCQ--PSTATYTMLINLYGKASKSYMALKVFH 297

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM S K + N+ T   ++ A+ +    +    +  +L    ++PD+     L        
Sbjct: 298 EMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL-------- 349

Query: 433 DGTGALEMWKRIGFLFKTVEI 453
                +E + R GF +   EI
Sbjct: 350 -----MEAYSRAGFPYGAAEI 365



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 67/362 (18%), Positives = 129/362 (35%), Gaps = 66/362 (18%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE- 227
           +  P +  YN +I  Y +   + +A     E+ E    P  DTY  L++AY    + ++ 
Sbjct: 163 SFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKA 222

Query: 228 ----------------------IDMCLK------------MMKLDGCSPDHITYNLLIQE 253
                                 ID  +K             MK D C P   TY +LI  
Sbjct: 223 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 282

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +  A         +  M +++      T  A+++A+   G+ +K E+ +++L  +     
Sbjct: 283 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 342

Query: 314 EDLVRKLAEVYIKN---YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
                 L E Y +    Y  + +  L   +     R      +     A L  H    +V
Sbjct: 343 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL--HEDAQAV 400

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
              M+   +   + +  ++L AY +         +++++    +KPD   +  +      
Sbjct: 401 FEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM------ 454

Query: 431 GFDGTGALEMWKRIGFLFKTVE-------------INTDPLVLAVYGKGHFLRYCEEVYS 477
                  L ++ R+G   K  E             I+T  +++ +YG+  F    EE++ 
Sbjct: 455 -------LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFR 507

Query: 478 SL 479
           SL
Sbjct: 508 SL 509



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 54/128 (42%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M    +KP   + NS+++ Y ++G+F +    L  M++        TY+ LI  YG+  
Sbjct: 438 QMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 497

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +  ++   + +      PD +T+   I  ++      R    ++ M+    +    T  
Sbjct: 498 FFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAK 557

Query: 284 AILDAYMN 291
            +L A  N
Sbjct: 558 VLLSACSN 565


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 132/321 (41%), Gaps = 43/321 (13%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I ML +     +A   FQ M      P+LE Y +++  YS+ G F+ A   L+ MK  
Sbjct: 156 KLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMKAT 215

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI++      +D++   L  M   G  P+ +TYN L+  +  AG    
Sbjct: 216 PGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAE 275

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME T   ML+++      TM + L A+ + G ++ ME  Y++   S           L +
Sbjct: 276 MESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLD 335

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            Y K  M+ ++                                   +V+  M+     W 
Sbjct: 336 SYGKAKMYEKMG----------------------------------AVMEYMQKYYYSWT 361

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           + T N+++ A+ +  D + +  +   + +  +KP+ VT+  L  A        G  +  K
Sbjct: 362 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRA-------YGRADQVK 414

Query: 443 RIGFLFKTVEINTDPLVLAVY 463
           +I  + + +E N+D  +  V+
Sbjct: 415 KIETVLRIIE-NSDTTLDIVF 434



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++    + G   E      EM     KP +   NS +  +   G+      
Sbjct: 254 RPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMES 313

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              + +   +SP   TY+ L+ +YGK KMY+++   ++ M+    S   +TYN++I  F 
Sbjct: 314 CYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFG 373

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            AG L++ME  ++ M + R+     T+ +++ AY     + K+E   + + NS T L
Sbjct: 374 RAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTL 430



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +E+    F+ M+   +KP+     S+I  Y +  +  +    L  ++  +
Sbjct: 368 VIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSD 427

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +     ++ L+ AYG+     E+   L MMKL+  SPD +T   +I+ F   G+
Sbjct: 428 TTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKGI 482


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG------FALKPSLEIYNSIIHGY 184
           N    + N      +I  L + GL ++A++ F +M           +P++  YN +I   
Sbjct: 111 NEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDAL 170

Query: 185 SKIGKFNEALLFLNEMKEMN----LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
            K G  +  +  L  M++ N    + P S TY+ LI A GK  +Y++ +  + +M   G 
Sbjct: 171 CKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGV 230

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            PDHITY  LI  +  AGL +  E T+K M    + +      A++DAY   G+  K E+
Sbjct: 231 QPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEE 290

Query: 301 FYKRLLNSRTPLKEDLVRKLAEVYIK 326
            +K + +S     +     L E Y K
Sbjct: 291 MFKMMQHSGLRPNQVTYLSLMEAYGK 316



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGF----ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           +I  LC+EGL++  ++  Q M       +++P+   YN++I+   K G + +A   ++ M
Sbjct: 166 LIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLM 225

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            E  + P   TY  LI AYGK  +++  +   K MK    S D + Y  +I  +   GL 
Sbjct: 226 VEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLY 285

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           ++ E  +K M    +     T +++++AY   G+ ++
Sbjct: 286 QKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEE 322



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++IG L  EG +  A   FQEM     +     Y ++++ Y K   F EAL   + MKE 
Sbjct: 51  RLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKES 110

Query: 204 ---NLSPQSDTYDGLIQAYGKYKMYDE-----IDMCLKMMKLD-GCSPDHITYNLLIQEF 254
              N  P + T + LI A  K  +YD+      DM      L+ GC P+ ITYN+LI   
Sbjct: 111 NEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDAL 170

Query: 255 ACAGLL----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              GLL    K ++        + +   S+T   +++A    G+ +K E+ 
Sbjct: 171 CKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEEL 221



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 128 MWKNIEKS---------RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +W+N E +          ++      +I     EGL ++A   F+ M+   L+P+   Y 
Sbjct: 249 LWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYL 308

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S++  Y K G   E+    N M+E         Y  LI AYGK   Y E    L MM+  
Sbjct: 309 SLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRA 368

Query: 239 GCSPDHITYNLLI 251
           GC P+ ITY+ ++
Sbjct: 369 GCQPNLITYSAIL 381



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + GL E+A      M    ++P    Y ++I  Y K G +  A    
Sbjct: 198 NSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTF 257

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             MK  N+S     Y  +I AYG+  +Y + +   KMM+  G  P+ +TY  L++ +  A
Sbjct: 258 KGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKA 317

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEK 300
           GL +     +  M             +++DAY   G       MLD M +
Sbjct: 318 GLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRR 367



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+  +Y  +I    + G+ + A L   EM          TY  L+ AYGK KM++E    
Sbjct: 44  PNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAV 103

Query: 232 LKMMKLD---GCSPDHITYNLLIQEFACAGL 259
              MK      C P+ +T N LI      GL
Sbjct: 104 FSHMKESNEPNCQPNTVTCNALIDALVKGGL 134



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 127 DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +M+K ++ S  R N+     ++    + GL EE+   F  M     + ++ IY+S+I  Y
Sbjct: 290 EMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAY 349

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            K G + EA   L+ M+     P   TY  ++ +  K   + E  + L+ +++ G
Sbjct: 350 GKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLLRRLQVFG 404


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 148/342 (43%), Gaps = 10/342 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F  +I  L N  + ++   +F+  +W   E + I+ +N+  +I  LC+ G    AVR F+
Sbjct: 169 FNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVIS-YNT--VINGLCKNGNTIMAVRVFR 225

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +ME    KP++  YN+II    K    NEA+ FL+EM +  + P   TY+ ++  +    
Sbjct: 226 KMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLG 285

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             +E     K M      PD +T+N+L+      G++       ++M  K     + T  
Sbjct: 286 QLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYN 345

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           A++D Y     +D+  K    ++             L   Y K+   +    L  +++ +
Sbjct: 346 ALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEK 405

Query: 344 IGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
               + V    L+   C +   R   ++ +EM S+ +  ++   +I+L  + K       
Sbjct: 406 NLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEA 465

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
             LL E+  R +KP+I+   IL     I     G LE+ K +
Sbjct: 466 LKLLKEMHERRIKPNIILYTILIRGMFIA----GKLEVAKEL 503



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG++ EA    + M     +P+   YN+++ GY    + +EA+  L  M    
Sbjct: 312 LVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKG 371

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   +Y+ LI  Y K K  +E    L  M     +PD +TY+ L+Q     G  +   
Sbjct: 372 CAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREAL 431

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K M +  +         +LD +   G LD+  K  K +   R  +K +++  L  + 
Sbjct: 432 NLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR--IKPNII--LYTIL 487

Query: 325 IKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSHACL---LSHRGIDSVVREMESAK 378
           I+    +   ++  +L S++    +   +W   ++    L   LS    +   R+ME   
Sbjct: 488 IRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE-FFRKMEDDG 546

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              +  + N+I+  +L+ +D      L+ E+  +    D  T  +L D
Sbjct: 547 FLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 126/319 (39%), Gaps = 7/319 (2%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +FL + ++ +Q      +   ++   +  N ++   +I  LC    ++ AV    +M   
Sbjct: 101 KFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKL 160

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P    +N++I+G    GK  EA+   NEM      P   +Y+ +I    K       
Sbjct: 161 GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMA 220

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               + M+ +   P+ +TYN +I       L+         M+ + +     T   IL  
Sbjct: 221 VRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHG 280

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           + + G L++  + +K ++             L +   K  M S    + + +  +     
Sbjct: 281 FCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPN 340

Query: 349 LVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
                 L+   CL  H  +D  ++    M       N+++ NI++  Y K K     + L
Sbjct: 341 AYTYNALMDGYCL--HNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRL 398

Query: 406 LSELPTRHVKPDIVTIGIL 424
           LSE+  +++ PD VT   L
Sbjct: 399 LSEMSEKNLTPDTVTYSTL 417



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 36/274 (13%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+ +F  M     +PS+  +   +   +K  +++ A+   N+M    ++    + + 
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 215 LIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI    +    D  + +  KM KL G  PD IT+N LI      G +K   G +  M+  
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKL-GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
                  +   +++     G      + ++++  +R             V   N +   +
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGK---------PNVVTYNTI---I 243

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           D L  D              RL++ A           + EM    +  +V T N IL  +
Sbjct: 244 DSLCKD--------------RLVNEAV--------EFLSEMVDRGIPPDVVTYNTILHGF 281

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +        L  E+  R+V PD VT  IL D 
Sbjct: 282 CSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDG 315


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 143/336 (42%), Gaps = 11/336 (3%)

Query: 105 HFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAF 162
           HF  ++  F++N   +     V+D  K I    + + F    ++  LC++GL   A+   
Sbjct: 348 HFNTLVNGFVRNGRLNEATAFVYD--KMINNGYVPDVFTFSTLVNGLCKKGLFGSALELV 405

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +M+    KP+L  Y  +I G+ K G+  EA L L EM     S  +  Y+ LI A  K+
Sbjct: 406 NDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKH 465

Query: 223 -KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            K+++ +DM    M   GC PD  T+N LI        ++     Y+ M+ + +   S T
Sbjct: 466 GKIHEALDM-FGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVT 524

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++ A++  G + +  K    +L    PL E     L +   K     +   L +++ 
Sbjct: 525 FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584

Query: 342 SRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            +     ++ C  L++  C     H  ++  +R+M       ++ T N ++    K    
Sbjct: 585 RKGLTPSIITCNILINGFCTAGKVHNALE-FMRDMIHRGFSPDIVTYNSLINGLCKRGRI 643

Query: 400 KHLRVLLSELPTRHVKPDIVTIG--ILYDARRIGFD 433
           +    L  +L    ++PD +T    I +  R   FD
Sbjct: 644 QEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFD 679



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 16/262 (6%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I  LC+ G + EA+  F EM     KP +  +NS+I G  ++ +  +AL  
Sbjct: 450 LNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL 509

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +M    +   S T++ LI A+ +     E    +  M   GC  D ITYN LI+    
Sbjct: 510 YRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCK 569

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +++  G ++ M+ K +     T   +++ +   G +    +F + +++       D+
Sbjct: 570 TGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRG--FSPDI 627

Query: 317 VR---------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR--LLSHACLLSHR 365
           V          K   +     +F +L   G    S    T + W  R      AC L +R
Sbjct: 628 VTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYR 687

Query: 366 GIDSVVREMESAKVRWNVTTAN 387
           G+++         V WN+   N
Sbjct: 688 GVEN---GFVPNDVTWNILVYN 706



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 12/292 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N++    ++  LC    ++ A    ++M      P+  IY ++I   SK  + +EAL  L
Sbjct: 209 NDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLL 268

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM  M   P  +T++ +I  + +     E    +  M L G +P+ +TY  L+      
Sbjct: 269 EEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMH----- 323

Query: 258 GLLKRME-GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF-YKRLLNSRTPLKED 315
           GL K       +++L+K           +++ ++  G L++   F Y +++N+       
Sbjct: 324 GLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVF 383

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC---LLSHRGIDSVVR 372
               L     K  +F    +L +D+ ++  +  L     L+   C    L   G+  ++R
Sbjct: 384 TFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGL--ILR 441

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           EM +     N    N ++ A  K         +  E+ ++  KPDI T   L
Sbjct: 442 EMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSL 493



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +  A+   ++M      P +  YNS+I+G  K G+  EAL    +++   
Sbjct: 598 LINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEG 657

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           + P S TY+ LI    +   +D+    L     +G  P+ +T+N+L+  F 
Sbjct: 658 IQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFG 708



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 108/275 (39%), Gaps = 12/275 (4%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M    + P+   +  ++     + + + A L L +M +    P S  Y  LI 
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLID 253

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           A  K    DE    L+ M L GC PD  T+N +I  F    L + +EG   + L  RM L
Sbjct: 254 ALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF--CRLNRVLEG---AKLVDRMIL 308

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-VRKLAEVYIKNYMFSRLDDL 336
           +  T   +   Y+  G+         + L S+ P    +    L   +++N   +     
Sbjct: 309 KGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAF 368

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLA 392
             D     G    V+    L +   L  +G+      +V +M++   + N+ T  I++  
Sbjct: 369 VYDKMINNGYVPDVFTFSTLVNG--LCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + K    +   ++L E+ T+    + V    L  A
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSLNTVGYNALISA 461



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  +I  LC+ G ++EA+  F++++   ++P    YN++I    + G F++A   
Sbjct: 627 IVTYNS--LINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFL 684

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGK 221
           L    E    P   T++ L+  +GK
Sbjct: 685 LYRGVENGFVPNDVTWNILVYNFGK 709


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 160/409 (39%), Gaps = 50/409 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++      G  E A+R F EM     KP++  +N++I  +   GKF E +    E
Sbjct: 210 FTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEE 269

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +K     P   T++ L+  +G+  M  E+    K MK  G  P+  TYN LI  ++  G 
Sbjct: 270 IKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGS 329

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
             +    YK ML   +    ST  A+L A    G+ ++ EK +  + + R    E     
Sbjct: 330 FDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCS 389

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRI--GRTELVWCLRLLSHAC----------------- 360
           L   Y       R+  L +++ S +      L+  L L++  C                 
Sbjct: 390 LLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKG 449

Query: 361 ----------LLSHRG-------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
                     +LS  G        + ++  M  +    ++ T N ++  + + ++F+   
Sbjct: 450 FSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSE 509

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI-------GFLFKTVEINTD 456
            +L E+  + +KPD ++    Y+     +   G ++   RI       G +   +  NT 
Sbjct: 510 EVLKEILAKGIKPDTIS----YNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNT- 564

Query: 457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKN 505
              +A Y          +V   +  +  +  + TY +++D   KHN ++
Sbjct: 565 --FVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRD 611



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 43/316 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG---------------- 188
           +I      G   EAV  F++ME    KP+L  YN I++ Y K+G                
Sbjct: 39  LITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNA 98

Query: 189 -------KFN-------------EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                   +N             EA     +MK M   P   TY+ L+  YGK +   E 
Sbjct: 99  GVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEA 158

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L+ M+++GCSP  +TYN LI  +A  GLLK        M+   ++L   T   +L  
Sbjct: 159 MEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSG 218

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           ++  G  +   + +  +  +           L +++     F+ +  + +++ +     +
Sbjct: 219 FVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPD 278

Query: 349 LVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           +V    LL+   +    G+DS    V +EM+ A       T N ++ AY +   F     
Sbjct: 279 IVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMD 335

Query: 405 LLSELPTRHVKPDIVT 420
           +   +    + PD+ T
Sbjct: 336 IYKRMLEAGITPDLST 351



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 145/319 (45%), Gaps = 8/319 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F A+I+   N  +  ++ +VF+  KN      I  +N+  ++ +  + G+  E    F+E
Sbjct: 247 FNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNT--LLAVFGQNGMDSEVSGVFKE 304

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     P  + YN++I  YS+ G F++A+     M E  ++P   TY+ ++ A  +  +
Sbjct: 305 MKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGL 364

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +++ +     MK   C P+ +TY  L+  +A    + RM    + + +  +   +  +  
Sbjct: 365 WEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKT 424

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNYMFSRLDDLGDDL-A 341
           ++       +L + E  +  L   R     DL  +  +  +Y +  MF++ +++ + +  
Sbjct: 425 LVLVNSKCDLLVEAEVAFLEL--KRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNE 482

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           S    +   +   +  H+   +    + V++E+ +  ++ +  + N ++ AY +    K 
Sbjct: 483 SGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKE 542

Query: 402 LRVLLSELPTRHVKPDIVT 420
              + SE+    + PD++T
Sbjct: 543 ASRIFSEMRESGLVPDVIT 561



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 133/324 (41%), Gaps = 4/324 (1%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           K  + A++     S R+++  +V  +M  N     I  +NS  +I     +GL++EA+  
Sbjct: 139 KVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNS--LISAYARDGLLKEAMEL 196

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             +M    +   +  Y +++ G+ + GK   A+    EM+     P   T++ LI+ +G 
Sbjct: 197 KNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGN 256

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
              + E+    + +K   C PD +T+N L+  F   G+   + G +K M          T
Sbjct: 257 RGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDT 316

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++ AY   G  D+    YKR+L +           +     +  ++ + + +  ++ 
Sbjct: 317 YNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMK 376

Query: 342 -SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
             R    EL +C  L ++A       + ++  E+ S  +  +      ++L   K     
Sbjct: 377 DGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLV 436

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
              V   EL  +   PD+ T+  +
Sbjct: 437 EAEVAFLELKRKGFSPDLSTLNAM 460



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 136/327 (41%), Gaps = 27/327 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           II ML +EG +  A     ++  +GF L   +  Y S+I      G++ EA++   +M+E
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGL--DVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 203 MNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
               P   TY+ ++  YGK  M +++I    + MK  G  PD  TYN LI       L +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAY-MNFGMLDKMEKFYKRLLNSRTPLKEDLV--R 318
                +K M +        T  A+LD Y  +    + ME   +  +N  +P    +V   
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSP---SIVTYN 178

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS---HRGIDS----VV 371
            L   Y ++ +     +L + +       E    L + ++  LLS     G D     V 
Sbjct: 179 SLISAYARDGLLKEAMELKNQM------VEGGINLDVFTYTTLLSGFVRAGKDESAMRVF 232

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDAR 428
            EM +A  + N+ T N ++  +     F  +  +  E+      PDIVT   L   +   
Sbjct: 233 AEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQN 292

Query: 429 RIGFDGTGALEMWKRIGFLFKTVEINT 455
            +  + +G  +  KR GF+ +    NT
Sbjct: 293 GMDSEVSGVFKEMKRAGFVPERDTYNT 319



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 8/276 (2%)

Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G L EEA   F++M+     P    YN+++  Y K  +  EA+  L EM+    SP 
Sbjct: 114 CRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPS 173

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI AY +  +  E       M   G + D  TY  L+  F  AG  +     + 
Sbjct: 174 IVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFA 233

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M          T  A++  + N G   +M K ++ + NS      D+V    L  V+ +
Sbjct: 234 EMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNS--CCVPDIVTWNTLLAVFGQ 291

Query: 327 NYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           N M S +  +  ++  A  +   +    L      C    + +D + + M  A +  +++
Sbjct: 292 NGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMD-IYKRMLEAGITPDLS 350

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           T N +L A  +   ++    + +E+     KP+ +T
Sbjct: 351 TYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELT 386



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SRS    +  ++ K I    I  +  +   +I   C  G M+EA R F EM    L P +
Sbjct: 500 SRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDV 559

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
             YN+ +  Y+    F +A+  +  M +    P  +TY+ ++  Y K+   D+  M
Sbjct: 560 ITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIM 615


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 8/323 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEG 167
           ++R L  + R+ +  +V  +   +++ ++ E +   I I  LC+  ++++A   FQE++ 
Sbjct: 37  LVRELSKAGRAEECLKVVKLM--LDRQQLRERHLVNITIDSLCKSDMIDKAESWFQELKD 94

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           F    +   YN +I+ + K  + +EA+    EMK    +P + TY+ LI    + +   E
Sbjct: 95  FRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGE 154

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + +   G     ITYN+L+  F  A  +         ++ +   + S+    I+D
Sbjct: 155 AQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIID 214

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
                G + + E F+ R+       +E     L +   K    +R  ++        G  
Sbjct: 215 TLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSP 274

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW---NVTTANIILLAYLKMKDFKHLRV 404
            +V C  L+   C   + G+D   R  E    R    N  + NI++    K K     R 
Sbjct: 275 SVVICSCLMDGFC--KYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQARE 332

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           +  E+  R  KPD+VT     D 
Sbjct: 333 VFEEVVKRQAKPDVVTYSTFMDG 355



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           ++F++  N      N+ +   +I  LC+   + +A   F+E+     KP +  Y++ + G
Sbjct: 297 RIFELMTN-RGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDG 355

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM-MKLDGCSP 242
             +  + ++A   L  + +   +P    Y  LI         DE     ++ M+  GC+P
Sbjct: 356 LCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAP 415

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++ T N+L+  F  AG L      ++  + + +     T  A+
Sbjct: 416 NNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAM 458



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 1/159 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G ++EA R F+ M      P+    N +I+G  K  + ++A     E+ +    P 
Sbjct: 286 FCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPD 345

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY   +    +    D+    L M+   G +PD + Y  LI      G L      ++
Sbjct: 346 VVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFE 405

Query: 269 -SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             M        + T   +++ +   G LD+  + ++R +
Sbjct: 406 VDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFV 444


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 14/199 (7%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
            V RF K+   +   P VF    NI            +I  +C+EG +E A   F+EM+ 
Sbjct: 78  GVKRFFKDMIGAGAKPTVFTY--NI------------MIDCMCKEGDVEAARGLFEEMKF 123

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P    YNS+I G+ K+G+ ++ + F  EMK+M   P   TY+ LI  + K+    +
Sbjct: 124 RGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPK 183

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + MK +G  P+ ++Y+ L+  F   G++++    Y  M    +     T  +++D
Sbjct: 184 GLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 243

Query: 288 AYMNFGMLDKMEKFYKRLL 306
           AY   G L    +    +L
Sbjct: 244 AYCKIGNLSDAFRLANEML 262



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 133/310 (42%), Gaps = 12/310 (3%)

Query: 125 VFD-MW--KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           VFD +W  +N+       F++  +  +L + G++EEA++ F +M+ F + P     N ++
Sbjct: 10  VFDVLWSTRNVCVPGFGVFDA--LFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLL 67

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           H ++K+GK +    F  +M      P   TY+ +I    K    +      + MK  G  
Sbjct: 68  HKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLI 127

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD +TYN +I  F   G L      ++ M          T  A+++ +  FG L K  +F
Sbjct: 128 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEF 187

Query: 302 YKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIG--RTELVWCLRLLS 357
           ++ +   R  LK ++V    L + + K  M  +      D+  R+G    E  +   + +
Sbjct: 188 FREM--KRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM-RRVGLVPNEYTYTSLIDA 244

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           +  + +      +  EM    V WNV T   ++      ++      LL E+    +K  
Sbjct: 245 YCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVT 304

Query: 418 IVTIGILYDA 427
           +VT  +L D 
Sbjct: 305 VVTFCVLIDG 314



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++P+  + ++ ++++  + N  +   ++   C+EG+M++A++ + +M    L P+   Y 
Sbjct: 180 KLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 239

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           S+I  Y KIG  ++A    NEM ++ +     TY  LI  
Sbjct: 240 SLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDG 279


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 162/390 (41%), Gaps = 45/390 (11%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+ E A+R F EM     KP++  +N++I  +   G+F E +    E++  N +P   T+
Sbjct: 407 GMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTW 466

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  +G+  M  E+    K MK  G  P+  T+N LI  ++  G  ++    YK ML 
Sbjct: 467 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLE 526

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +    S+  A+L A    G+ ++ EK +  + + R    E     L   Y  +    R
Sbjct: 527 AGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIER 586

Query: 333 LDDLGDDLASRIGRTE----LVWCLRLLSHAC-----------LLSHRG----------- 366
           +  L +++ S  G TE    L+  L L++  C            L  +G           
Sbjct: 587 MHTLAEEIYS--GLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMI 644

Query: 367 -----------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                       + ++  M  +    ++ T N ++  + + ++F+    +L E+  + +K
Sbjct: 645 AIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLK 704

Query: 416 PDIVTIG-ILYDARRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           PD+++   +++   R G   D +      K  G +   +  NT    +A Y         
Sbjct: 705 PDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNT---FVASYAADSLFEDA 761

Query: 473 EEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
             V   +  +  ++ + TY +++D   KH+
Sbjct: 762 IGVVRYMIKHGCKRNQNTYNSIVDGYCKHS 791



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 157/386 (40%), Gaps = 49/386 (12%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +SR+  +  ++ K +E S     I  +NS  +I     +GL+ EA+    +M    +KP 
Sbjct: 335 KSRRPKEAMEVLKEMEFSGFSPSIVTYNS--LISAYARDGLLREAMELKDQMVEKGIKPD 392

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +++ G+ K G    A+    EM+     P   T++ LI+ +G    + E+    +
Sbjct: 393 VFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFE 452

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            +++  C+PD +T+N L+  F   G+   + G +K M          T   ++ AY   G
Sbjct: 453 EIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 512

Query: 294 MLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
              +    YKR+L +  TP                           DL+S          
Sbjct: 513 SFQQAMAVYKRMLEAGVTP---------------------------DLSSYNA------V 539

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           L  L+   L      + V  EM+  + + N  T   +L AY   K+ + +  L  E+ + 
Sbjct: 540 LAALARGGLWEQS--EKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSG 597

Query: 413 HVKPDIV---TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL 469
             +P  V   T+ ++     +  +   A E  K+ G    + +++T   ++A+YG+   +
Sbjct: 598 LTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG----SPDLSTLNAMIAIYGRRQMV 653

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLI 495
               E+ + +          TY +L+
Sbjct: 654 AKANEILNFMNESGFSPSLATYNSLM 679



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 138/342 (40%), Gaps = 18/342 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           II ML +EG +  A      +  +GF L   +  Y S+I  Y+  G++ +A+L   +M+E
Sbjct: 188 IITMLGKEGKVSAASSILNNLRKDGFDL--DVYAYTSLITAYASNGRYRDAVLVFKKMEE 245

Query: 203 MNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
               P   TY+ ++  YGK  M + +I   +  MK  G +PD  TYN LI       L +
Sbjct: 246 EGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYE 305

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
                ++ M          T   +LD Y       +  +  K +  S           L 
Sbjct: 306 EAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLI 365

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESA 377
             Y ++ +     +L D +  +  + ++     LLS        G+D     +  EM +A
Sbjct: 366 SAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSG---FEKAGMDEPAMRIFGEMRAA 422

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDG 434
             + N+ T N ++  +     F  +  +  E+   +  PDIVT   L   +    +  + 
Sbjct: 423 GCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEV 482

Query: 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           +G  +  KR GF+ +    NT   +++ Y +    +    VY
Sbjct: 483 SGVFKEMKRAGFVPERDTFNT---LISAYSRCGSFQQAMAVY 521



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 119/314 (37%), Gaps = 43/314 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK--------------- 189
           +I      G   +AV  F++ME    KP+L  YN I++ Y K+G                
Sbjct: 223 LITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSS 282

Query: 190 ---------------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                                + EA     EMK    SP   T++ L+  YGK +   E 
Sbjct: 283 GVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEA 342

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              LK M+  G SP  +TYN LI  +A  GLL+        M+ K +     T   +L  
Sbjct: 343 MEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSG 402

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           +   GM +   + +  +  +           L +++     F+ +  + +++       +
Sbjct: 403 FEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPD 462

Query: 349 LVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           +V    LL+   +    G+DS    V +EM+ A       T N ++ AY +   F+    
Sbjct: 463 IVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMA 519

Query: 405 LLSELPTRHVKPDI 418
           +   +    V PD+
Sbjct: 520 VYKRMLEAGVTPDL 533


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 35/300 (11%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +FD+ K     + + +     I  +C+EG +EEA    ++M+   L+P+   YN++I GY
Sbjct: 248 IFDLMK-CRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY 306

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
              G    A  + ++M    L P   TY+ LI A       DE D  +K M   G  PD 
Sbjct: 307 CNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDS 366

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN+LI  +   G +K+    +  M++K +     T  +++      G + + +  +++
Sbjct: 367 VTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEK 426

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           ++  R  +  DL+           MF+ L D                      H    + 
Sbjct: 427 IV--RKGIFPDLI-----------MFNALID---------------------GHCANGNM 452

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               ++++EM+  KV  +  T N ++    +    +  R L+ E+ +R +KPD ++   L
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTL 512



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 116/311 (37%), Gaps = 75/311 (24%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           FLK++   +      +M++   KS +  FN   +I +LC+EG +++A      ME   +K
Sbjct: 166 FLKSNRTEKAWVLYAEMFRMRIKSSVVTFNI--MINVLCKEGKLKKAKEFIGLMEALGIK 223

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P++  YN+IIHGY   G+   A +  + MK   + P S TY   I    K    +E    
Sbjct: 224 PNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGM 283

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ MK  G  P  +TYN LI                                   D Y N
Sbjct: 284 LEKMKEIGLRPTAVTYNTLI-----------------------------------DGYCN 308

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            G L+    +  +++                                    R G    V 
Sbjct: 309 KGNLEMAFDYRDKMV------------------------------------REGLMPTVS 332

Query: 352 CLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
              +L HA  L  +    D +++EM    +  +  T NI++  Y +  + K    L  E+
Sbjct: 333 TYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392

Query: 410 PTRHVKPDIVT 420
            ++ ++P  VT
Sbjct: 393 ISKGIQPTRVT 403


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 16/376 (4%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +  FN   +IG  C  G +EEA+R ++EM G  + P +  ++ +I  +++ G+ + A  +
Sbjct: 264 VRSFN--MLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM+E  L P    Y  +I  + +  +  E       M   GC PD +TYN L+     
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
              L   E     M  + +     T   ++  Y   G ++K  +F+  + + R  L+ D+
Sbjct: 382 ERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR--LRPDI 439

Query: 317 V--RKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
           V    L +   +     + ++L DD+ SR I    + + + + SH          + + E
Sbjct: 440 VTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDE 499

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M +  +  N+ T N I+  Y +  +    +  L ++    V PD++T    Y+    G+ 
Sbjct: 500 MVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT----YNTLIHGYV 555

Query: 434 GTGALEMWKRIGFLFKTVEINTDP----LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRW 489
             G +     +  + +   +  D     ++++ +     ++  + VY  +     E  R+
Sbjct: 556 KEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRY 615

Query: 490 TYQNLIDL-VIKHNGK 504
           TY ++I+  V+  N K
Sbjct: 616 TYMSMINGHVVAGNSK 631



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  ++W ++    I  N      +I   CE+G ++ A     EM    + P++ 
Sbjct: 451 RQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIM 510

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKM 234
            YNSII GY + G  ++   FL +M+   + P   TY+ LI  Y K  KM++  ++ LK+
Sbjct: 511 TYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNL-LKI 569

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+ +   PD +TYN++I  F+  G ++  +  YK M  + +     T +++++ ++  G 
Sbjct: 570 MENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGN 629

Query: 295 LDKMEKFYKRLL 306
             K  + +  +L
Sbjct: 630 SKKSFQLHDEML 641



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  II   C  G + +  +   +M    + P L  YN++IHGY K GK +EA   
Sbjct: 509 IMTYNS--IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNL 566

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M+  N+ P + TY+ +I  +  +    E D   K M   G  PD  TY  +I     
Sbjct: 567 LKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVV 626

Query: 257 AGLLKRMEGTYKSMLTK 273
           AG  K+    +  ML K
Sbjct: 627 AGNSKKSFQLHDEMLQK 643



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/308 (17%), Positives = 121/308 (39%), Gaps = 1/308 (0%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N +    ++   C+     E      EME   + P +  +N ++    + G    A+
Sbjct: 155 SEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAM 214

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++ M    + P   TY+ +++   +   +D+     + M   G +PD  ++N+LI  F
Sbjct: 215 ALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGF 274

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             AG L+     YK M  +R+     +   ++  +   G +D   ++ + +         
Sbjct: 275 CRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDG 334

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVRE 373
            +   +   + +  +      + D++ +     ++V    LL+  C        + ++ E
Sbjct: 335 VIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M+   V  ++ T   ++  Y +  + +        +  + ++PDIVT   L D      D
Sbjct: 395 MKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGD 454

Query: 434 GTGALEMW 441
              A E+W
Sbjct: 455 LGKANELW 462


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  P++  +   +  + +  ++F +  +I   C +GL++EAV  F++++     P +  
Sbjct: 222 GRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVT 281

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM++    P + TY+ L   Y +   Y+E   CL  M 
Sbjct: 282 YNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMT 341

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF--GM 294
             G  P+  TYN ++  +   G +      +  M       + S  V  ++ Y NF  GM
Sbjct: 342 SKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQM-------KKSGCVPNVNTY-NFILGM 393

Query: 295 LDKMEKF 301
           L K  +F
Sbjct: 394 LGKKSRF 400



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 139/357 (38%), Gaps = 45/357 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           V+R L    +   +  + D       SR++      ++  L   G  E AV  F E+   
Sbjct: 143 VVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQ 202

Query: 169 ALKPSLEIYNSIIHGYSKIGK------------------------------------FNE 192
            + P+L  YN ++  Y ++G+                                     +E
Sbjct: 203 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDE 262

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A+ F  ++K    +P   TY+ L+Q +GK   Y E    LK M+ DGC PD +TYN L  
Sbjct: 263 AVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            +A AG  +       +M +K +   + T   ++ AY N G +D+    + ++  S    
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP 382

Query: 313 KEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
             +    +  +  K   F+  L+ LG+   S      + W   L     +   RG++   
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML----AVCGKRGMEDYV 438

Query: 370 --VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             V+  M+S  V  +  T N ++ AY +     +   + +E+ +    P + T   L
Sbjct: 439 TRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNAL 495



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 14/311 (4%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++ G     G  EEA +    M    L P+   YN+++  Y  IGK +EAL   ++MK+ 
Sbjct: 319 ELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKS 378

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P  +TY+ ++   GK   +  +   L  M   GC+P+ +T+N ++      G+   +
Sbjct: 379 GCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYV 438

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               + M +  + L   T   ++ AY   G      K Y  + ++           L  V
Sbjct: 439 TRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNV 498

Query: 324 YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
             +   +S    +   + ++     +  + L L  +A   +  GID++ +E+    V  +
Sbjct: 499 LSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPS 558

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
                 +++A  K +    +     E+  R   PD+V    +             L M+ 
Sbjct: 559 WVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSM-------------LSMYA 605

Query: 443 RIGFLFKTVEI 453
           + G   K  EI
Sbjct: 606 KNGMYSKVTEI 616



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 142/342 (41%), Gaps = 26/342 (7%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F  ++  L   SRS   P              N      ++ +  + G+ +   R  
Sbjct: 397 KSRFTVMLEMLGEMSRSGCTP--------------NRVTWNTMLAVCGKRGMEDYVTRVL 442

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M+   ++ S + YN++I  Y + G    A    NEM     +P   TY+ L+    + 
Sbjct: 443 EGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQ 502

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  M+  G  P+  +Y+LL+Q +A  G +  ++   K +    +      +
Sbjct: 503 GDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVIL 562

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             ++ A      L  +EK ++ +  +R     DLV    +  +Y KN M+S++ ++ D +
Sbjct: 563 RTLVIANFKCRRLGGIEKAFQEV-KARG-YNPDLVIFNSMLSMYAKNGMYSKVTEIFDSI 620

Query: 341 ASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                  +L+    L+      S     + ++ +++S++V+ +V + N ++  + K    
Sbjct: 621 KQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLI 680

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           K  + +LSE+    + P +VT   L         G  +LEM+
Sbjct: 681 KEAQRILSEMIADGMAPCVVTYHTL-------VGGYASLEMF 715



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 10/206 (4%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VF  W  +    I  F  +++ G+           +AFQE++     P L I+NS++  Y
Sbjct: 555 VFPSWVILRTLVIANFKCRRLGGI----------EKAFQEVKARGYNPDLVIFNSMLSMY 604

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           +K G +++     + +K+  LSP   TY+ L+  Y K     E +  L  +K     PD 
Sbjct: 605 AKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDV 664

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           ++YN +I  F   GL+K  +     M+   M     T   ++  Y +  M  +  +    
Sbjct: 665 VSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINY 724

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMF 330
           ++       E   R++ + Y K   F
Sbjct: 725 MIQHNLKPMELTYRRVVDSYCKAKRF 750



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 8/231 (3%)

Query: 107 WAVIRFLKNSS-RSRQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRA 161
           W ++R L  ++ + R++  +   ++ ++    N     FNS  ++ M  + G+  +    
Sbjct: 559 WVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNS--MLSMYAKNGMYSKVTEI 616

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F  ++   L P L  YNS++  Y+K  +  EA   LN++K   + P   +Y+ +I  + K
Sbjct: 617 FDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCK 676

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +  E    L  M  DG +P  +TY+ L+  +A   +          M+   +     T
Sbjct: 677 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELT 736

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
              ++D+Y      ++   F   +  +     + ++  LA  YI++  F R
Sbjct: 737 YRRVVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHTLA-AYIEDAQFGR 786



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 161/419 (38%), Gaps = 75/419 (17%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    ++      G ++EA+  F +M+     P++  YN I+    K  +F   L  L
Sbjct: 348 NAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEML 407

Query: 198 NEMKEMNLSP-----------------------------------QSDTYDGLIQAYGK- 221
            EM     +P                                     DTY+ LI AYG+ 
Sbjct: 408 GEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRC 467

Query: 222 ------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
                 +KMY+E       M   G +P   TYN L+   +  G     +     M TK  
Sbjct: 468 GSRTNAFKMYNE-------MTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGF 520

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                +   +L  Y   G +  ++   K +          ++R L     K      ++ 
Sbjct: 521 KPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEK 580

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE----MESAKVRWNVTTANIILL 391
              ++ +R    +LV    +LS   + +  G+ S V E    ++ + +  ++ T N ++ 
Sbjct: 581 AFQEVKARGYNPDLVIFNSMLS---MYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMD 637

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
            Y K  +      +L++L +  VKPD+V+    Y+    GF   G ++  +RI  L + +
Sbjct: 638 MYAKCSESWEAEKILNQLKSSQVKPDVVS----YNTVINGFCKQGLIKEAQRI--LSEMI 691

Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
                P V+      H L      Y+SLE +S  ++      +I+ +I+HN K ++ T+
Sbjct: 692 ADGMAPCVVTY----HTL---VGGYASLEMFSEARE------VINYMIQHNLKPMELTY 737



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 129/365 (35%), Gaps = 56/365 (15%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLN 198
           + ++  L  EG  +       EM    L P     +  Y +++H  S+ G++  A+    
Sbjct: 141 EMVVRALGREGQHDAVCALLDEMP---LPPGSRLDVRAYTTVLHALSRAGRYERAVELFA 197

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           E++   ++P   TY+ ++  YG+  + +  I   L  M+  G  PD  T + +I      
Sbjct: 198 ELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRD 257

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           GL+      ++ +  +       T  A+L  +   G        Y   L     +++D  
Sbjct: 258 GLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGN-------YTEALRVLKEMEQDGC 310

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           +  A  Y         ++L    A      E   CL  ++   LL               
Sbjct: 311 QPDAVTY---------NELAGTYARAGFYEEAAKCLDTMTSKGLLP-------------- 347

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRIGFD 433
               N  T N ++ AY  +        L  ++      P++ T    +G+L    R    
Sbjct: 348 ----NAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRF--- 400

Query: 434 GTGALEM---WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
            T  LEM     R G     V  NT   +LAV GK     Y   V   ++    E  R T
Sbjct: 401 -TVMLEMLGEMSRSGCTPNRVTWNT---MLAVCGKRGMEDYVTRVLEGMKSCGVELSRDT 456

Query: 491 YQNLI 495
           Y  LI
Sbjct: 457 YNTLI 461


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 170/399 (42%), Gaps = 18/399 (4%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + +  F+ N  RS ++ +  +++K++    +  +  N   ++    + G   +A    QE
Sbjct: 333 FVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQE 392

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M   +    +  YN +I+G  K+GK+ E+  F   M+++ L+P S T++ +I AY K   
Sbjct: 393 MTEKSSGFDVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGN 451

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
                  L  MK  G  P+ IT N+L+Q    AG +++       ML    H   +T  A
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKA 511

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LDA       D +   + +L+     L       L   + +  M  R   +  D+  + 
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
              +++    L+   C+ SH +   +V  +M +  V  NV T NI+L      +  K   
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI-------GFLFKTVEINTD 456
            L++++  R + P+  T    YD    G    G ++   ++       GF+ KT   N  
Sbjct: 632 GLVNQMKERGLVPNATT----YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN-- 685

Query: 457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            ++++ + KG  +   +E+   ++         TY  LI
Sbjct: 686 -VLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +  AV   + M+     P +  YN++++G+ KIG    A   + E+  +N
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 205 LSPQSDTYDGLIQAYGKYK-------MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           L P   TY  LI AY K +       MYDE       M +    PD +TY  ++     +
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDE-------MTVKSLVPDVVTYTCIMNGLCKS 135

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G ++  +  ++ M    +     +   ++D+    G + +      R++         + 
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREME 375
             L +   K  M +  +D+   L         V    L+   C L   ++G + +++EME
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKG-ELLLQEME 254

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +  NV   + I+  Y K         ++ ++  R++ P++   G L D 
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG 306



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 122/277 (44%), Gaps = 2/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G+   A   FQ +   +L P+   Y+++I G+ K+G  N+  L L EM+E ++ P 
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  ++  Y K  + +E    ++ M      P+   Y  LI  +  A         +K
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-VRKLAEVYIKN 327
            M ++ +   +  + + ++     G +++ ++ +K ++ SR  L + +    + + + K 
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMM-SRGLLPDRVNYTSMMDGFFKA 380

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
              S   ++  ++  +    ++V    L++    L     +S    M    +  +  T N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ AY K  +  +   LL+E+ +  +KP+ +T  IL
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 131/313 (41%), Gaps = 31/313 (9%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++ S+E +N +I GY + G+ + A+  L  MK    +P   TY+ L+  + K        
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  + L    P+ ITY  LI  +  +  L+     Y  M  K +     T   I++  
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 290 MNFGMLDKMEKFYKRLLN--------SRTPLKEDLVRK--LAEVYI-KNYMFSRLDDLGD 338
              G +++ +  ++ +          S   L + L ++  +AE ++ +  M  R   +G 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR--GIGF 190

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           D+       + ++   + ++A        + + + +    +  N  T + ++  + K+ D
Sbjct: 191 DVVVYTALMDGLFKAGMANNA--------EDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
                +LL E+  +H+ P+++    + D    G+   G L   + +  + K V+ N  P 
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVD----GYTKKGLLN--EAMDVMRKMVQRNILPN 296

Query: 459 VLAVYGK---GHF 468
           V  VYG    G+F
Sbjct: 297 VF-VYGTLIDGYF 308



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+    ++GL+ EA+   ++M    + P++ +Y ++I GY K  +   AL    EMK   
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           L   +   D  +    +    +E D   K M   G  PD + Y  ++  F  AG
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAG 381



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ +   +++ +E+  +  N F+   +I  L +EG + EA      M    +   + 
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y +++ G  K G  N A      + E +L P   TY  LI  + K    ++ ++ L+ M
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +     P+ I Y+ ++  +   GLL       + M+ + +         ++D Y
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 2/204 (0%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +   +  +N +N+  +I +  + G  +E++  F ++    ++P +  Y  +++   K
Sbjct: 310 DMKERGTEPDVNTYNT--LIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGK 367

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G    A      M +  ++P +D + GLI AYG   +Y E       MK  GC PD  T
Sbjct: 368 GGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLET 427

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN LI   A  GL       Y +M+ + +    ST  ++++A+   G+ D   +F + + 
Sbjct: 428 YNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDME 487

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMF 330
            +R          L  VY    +F
Sbjct: 488 EARCSPNRHTYEALMGVYCTAGLF 511



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EME     P +  YN +I  Y + GK+  A     +M+E   +P   T+  L++AYGK
Sbjct: 238 LREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGK 297

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           +  YDE+ +    MK  G  PD  TYN LIQ F   G  +     +  +L   +    ST
Sbjct: 298 HGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMST 357

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              +L +    G+    +K ++ +L S      D    L   Y    ++S
Sbjct: 358 YAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYS 407



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 143/373 (38%), Gaps = 14/373 (3%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           EK   N      +I    + GL  E +   F +M    ++P +  YN+++   S  G   
Sbjct: 138 EKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVE 197

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA +    M E  + P S TY+ L+  YG+   ++ +   L+ M+  G +PD + YN+LI
Sbjct: 198 EAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILI 257

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           + +  AG  +     +K M          T   +L+AY   G  D++   +  +    T 
Sbjct: 258 EAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTE 317

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDS 369
              +    L +V+ +   F    +L  DL       ++     LL ++C     H+    
Sbjct: 318 PDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLL-YSCGKGGLHKAAKK 376

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           + R M  + V         ++ AY     +       + +     KPD+ T   L     
Sbjct: 377 IHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNAL----- 431

Query: 430 IGFDGTGALEMWKRIGFLFK-----TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSR 484
           IG    G L       +L       + +++T   ++  +G+G       E    +E    
Sbjct: 432 IGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARC 491

Query: 485 EKKRWTYQNLIDL 497
              R TY+ L+ +
Sbjct: 492 SPNRHTYEALMGV 504



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 155/356 (43%), Gaps = 36/356 (10%)

Query: 70  SYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMW 129
           SY    A+N L   L  + S    +  +    T + F  + R     S  ++  ++F   
Sbjct: 6   SYDVENAINNLTS-LAPRGSIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYM 64

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           +  +  + NE     +IG++  EG++++A   F++M    ++ ++  + ++I+ Y + G+
Sbjct: 65  QRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQ 124

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYN 248
              +L  L  MK   ++P   TY+ +I A  K  + ++ +      M+ +G  PD ITYN
Sbjct: 125 HEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYN 184

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            L+   +  GL++     +++M    +   S T  A++D Y   G  D+ E         
Sbjct: 185 TLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIY---GQADRHEGV------- 234

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
                 +L+R++ +            D+            + + + + ++     +R   
Sbjct: 235 -----GELLREMEQA-------GNAPDV------------VAYNILIEAYGRAGKYRAAA 270

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + ++M+ A    +V T + +L AY K   +  +R+L +++  R  +PD+ T   L
Sbjct: 271 KMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTL 326



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 10/217 (4%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L  EA  AF  M+    KP LE YN++I  ++  G + EA      M +  +S    TY+
Sbjct: 405 LYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYN 464

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI+A+G+  ++D+     + M+   CSP+  TY  L+  +  AGL    +  +  +   
Sbjct: 465 SLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVG 524

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN------ 327
                  +   +L         D   K  + +L    P    +V  + +  + +      
Sbjct: 525 GELPSVDSYCLLLSVCARRNRWDDASKVLEEMLEPNMPSIYGVVGGILKGEMDDGTNWQR 584

Query: 328 --YMFS--RLDDLGDDLASRIGRTELVWCLRLLSHAC 360
             Y F   ++D +G +L       E +WCL     AC
Sbjct: 585 VEYAFDGLKVDGVGSNLRFYNALLEALWCLGQRERAC 621



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 61/145 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL + A +  + M    + P+ + +  +I  Y     ++EA    N MKE    P  +TY
Sbjct: 369 GLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETY 428

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI A+    +Y E       M  +G S D  TYN LI+ F   GL        + M  
Sbjct: 429 NALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEE 488

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDK 297
            R      T  A++  Y   G+ D+
Sbjct: 489 ARCSPNRHTYEALMGVYCTAGLFDE 513



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVR 160
           T D F  +I    N++   +    F+  K    K  +  +N+  +IG     GL  EA  
Sbjct: 389 TTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNA--LIGAHAGGGLYCEAGS 446

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
           A+  M    +   +  YNS+I  + + G F++A+ F  +M+E   SP   TY+ L+  Y 
Sbjct: 447 AYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYC 506

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
              ++DE       +++ G  P   +Y LL+    CA
Sbjct: 507 TAGLFDEAKAQFLDLQVGGELPSVDSYCLLLS--VCA 541


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 120/300 (40%), Gaps = 40/300 (13%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +IG  C+ G+ME+AV     ME   + P++  YN +I G+ +    + A+  LN+
Sbjct: 363 FNA--LIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNK 420

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  LSP   TY+ LI    +  + D      ++M  DG SPD  T+N  +      G 
Sbjct: 421 MVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGR 480

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +       +S+  K +        A++D Y   G ++     +KR+L             
Sbjct: 481 VGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEEC--------- 531

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           L      N M   L   G                  +  A LL        V +M    V
Sbjct: 532 LPNSITFNVMIDGLRKEGK-----------------VQDAMLL--------VEDMAKFDV 566

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           +  + T NI++   LK  DF     +L+ L +   +P++VT    Y A    +   G LE
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVT----YTAFIKAYCSQGRLE 622



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGML 149
            +++  DG ++ D  W    F+    R  ++ +   + +++++  +  NE     +I   
Sbjct: 453 FRLMIRDG-FSPDQ-WTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGY 510

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +E A   F+ M      P+   +N +I G  K GK  +A+L + +M + ++ P  
Sbjct: 511 CKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTL 570

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ L++   K   +D  +  L  +   G  P+ +TY   I+ +   G L+  E     
Sbjct: 571 HTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIK 630

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +  + + L S     +++AY   G+LD      +R+  +
Sbjct: 631 IKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGT 669



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 21/305 (6%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N  +   +I  LCE G + EA+  +  M      P++  Y  ++    + G+  EAL 
Sbjct: 252 RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALS 311

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              EM+E    P   TY  LI    K    DE    L  M   G +P  + +N LI  + 
Sbjct: 312 LFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYC 371

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G+++   G    M +K++     T   ++  +     +D+      +++ S+  L  D
Sbjct: 372 KRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESK--LSPD 429

Query: 316 LVRKLAEVYIKNYMFSRLDDLG-DDLASRI-------GRTELVWCLRLLSHACLLSHRGI 367
           +V         N +   L ++G  D ASR+       G +   W        CL     +
Sbjct: 430 VV-------TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAF-MVCLCRMGRV 481

Query: 368 DSVVREMESAK---VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               + +ES K   V+ N      ++  Y K    +H   L   +      P+ +T  ++
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVM 541

Query: 425 YDARR 429
            D  R
Sbjct: 542 IDGLR 546



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            K+I  LC+ G +  A   +  M    + PS  I+NS++    K+G F EA+  L+ M E
Sbjct: 743 SKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMME 802

Query: 203 MNLSPQSDTYD----GLIQAYGKYKM-------------YDE---------------IDM 230
            +     ++Y     GL +   K K              YDE               +D 
Sbjct: 803 CSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQ 862

Query: 231 C---LKMMKLDGCSPDHITYNLLIQEF 254
           C   L +M+ +GC     TY++L+QE 
Sbjct: 863 CSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P++  Y + I  Y   G+  EA   + ++K   +   S  Y+ LI AYG   + D    
Sbjct: 602 QPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFG 661

Query: 231 CLKMMKLDGCSPDHITYNLLIQ 252
            L+ M   GC P ++TY++L++
Sbjct: 662 VLRRMFGTGCEPSYLTYSILMK 683



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F++M      P+L  Y+ +I+G  K+G+ N A    + M+E  +SP    ++ L+ +  K
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCK 786

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGLLKRM-----EGTYKSMLTKRM 275
             M+ E    L  M ++     H+ +Y LLI      GL ++M     E  + S+L    
Sbjct: 787 LGMFGEAVTLLDSM-MECSHLAHLESYKLLI-----CGLFEQMNKEKAEAVFCSLLRCGY 840

Query: 276 HLRSSTMVAILDAYMNFGMLDK 297
           +        ++D     G +D+
Sbjct: 841 NYDEVAWKVLIDGLAKTGYVDQ 862


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 79/162 (48%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEA+  F +ME   + P++  YN++I G    G+++EA +F  +M E  +
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGV 318

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L++   K K   +    LK M   G  P+ I YN LI     AG L +   
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K + L SST   ++  Y   G  D  E+  K +L+
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLS 420



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 5/190 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +  +IR L N ++   + +    W + +++ +  + +    +I   C+    EE  + F 
Sbjct: 570 YSILIRGLLNMNK---VEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFD 626

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EM    L+P+  +YN +I  Y + G+ + AL    +MK   +SP S TY  LI+      
Sbjct: 627 EMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 686

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             +E  + L+ M+++G  P+   Y  LI  +   G + ++E   + M +K +H    T  
Sbjct: 687 RVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 746

Query: 284 AILDAYMNFG 293
            ++  Y   G
Sbjct: 747 VMIGGYARDG 756



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 29/295 (9%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            S  ++  LCE G +EE  R  +E+ G         YN++I G     K +EA +F++EM
Sbjct: 499 TSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEM 558

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            +  L P + TY  LI+        +E        K +G  PD  TY+++I     A   
Sbjct: 559 VKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERT 618

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
           +  +  +  M++  +   +     ++ AY   G            L+    L+ED+  K 
Sbjct: 619 EEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGR-----------LSMALELREDMKHK- 666

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVW-CLRL-------LSHACLLSHRG------ 366
             +   +  ++ L   G  + SR+   +L+   +R+         +  L+   G      
Sbjct: 667 -GISPNSATYTSLIK-GMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMV 724

Query: 367 -IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            ++ ++REM S  V  N  T  +++  Y +  +      LL E+  + + PD +T
Sbjct: 725 KVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSIT 779



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 26/216 (12%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P + ++ + I+ + K GK  EA+   ++M+E  + P   TY+ +I   G    YDE 
Sbjct: 247 GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEA 306

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAI 285
            M  + M   G  P  ITY++L++    A   KR+   Y   K M  K           +
Sbjct: 307 FMFKEKMVERGVEPTLITYSILVKGLTKA---KRIGDAYCVLKEMTEKGFPPNVIVYNNL 363

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI- 344
           +D+ +  G L+K  +    +++    L       L    IK Y  S   D+ + L   + 
Sbjct: 364 IDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTL----IKGYCKSGQADIAERLLKEML 419

Query: 345 --------GRTELVWCLRLLSHACLLSHRGIDSVVR 372
                   G    V CL       L SH   DS +R
Sbjct: 420 SIGFNVNQGSFTSVICL-------LCSHHMFDSALR 448



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 46/108 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G   +AV  + +          +  N+++HG  + GK  E      E+    
Sbjct: 468 LISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRG 527

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                 +Y+ LI      K  DE  M +  M   G  PD+ TY++LI+
Sbjct: 528 FVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIR 575



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I    + G M +     +EM    + P+   Y  +I GY++ G   EA   L
Sbjct: 706 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 765

Query: 198 NEMKEMNLSPQSDTYDGLIQAY 219
           +EM+E  + P S TY   I  Y
Sbjct: 766 HEMREKGIVPDSITYKEFIYGY 787


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 167/406 (41%), Gaps = 40/406 (9%)

Query: 25  KKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRL 84
           K  KL   R  F K L           +  ++ Y S  H   +  S+ + + L A + R 
Sbjct: 22  KAGKLNDARDLFQKLLHSG-------VTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 85  NKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN-IEKSRINEFNS- 142
                CP   + ++              +  S +   + +  D+ K  IE   + +  + 
Sbjct: 75  G----CPPSPVTYN------------VIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC+ G +EEA+  F EME     P+   +N+II G  +  K ++A    +EM+ 
Sbjct: 119 NTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            ++ P S +Y  LI    K    +E     + M   G +P  +TYN++I     A  L  
Sbjct: 179 RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP---LKEDLVR 318
               +KSM +K       T   ++DA+   G +D+  +  KR+  +   P       L+ 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 319 KLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREM 374
            L  +       +R+DD   L +D+  R  +  +V    L+   C     +    V+  M
Sbjct: 299 GLCSI-------ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            S+    +V T N ++  + +    +  R LLS++  R + P++VT
Sbjct: 352 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM K   K  +   N+  +I  LC+ G ++EA      M      P +  YN+++HG+ +
Sbjct: 315 DMVKRQCKPTVVTQNT--LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+   A   L++M    L+P   TY  L+    K     E       MK  GC+P+  T
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 247 YNLLIQEFACAG 258
           Y  LI  F  AG
Sbjct: 433 YTALILGFCSAG 444



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    +++A    ++M     KP++   N++IHG  K G+  EA   L+ M    
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+ L+  + +    +     L  M   G +P+ +TY  L+     A  L    
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           G +  M +        T  A++  + + G +D   K +  ++
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 2/167 (1%)

Query: 124 QVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +  +++K++  +  R + F    +I   C+ G M+EA R  + M      P +  Y+++I
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            G   I + ++A   L +M +    P   T + LI    K     E    L  M   G S
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           PD +TYN L+     AG  +R       M+ + +     T  A++  
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G + +A   FQ++    + PS   Y S+IHG      F++A     +M    
Sbjct: 16  LIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             P   TY+ +I A  K  M +E    +K M  DG  PD +TYN ++     +G
Sbjct: 76  CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSG 129



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 3/155 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +I  L  + R ++  +V D M  + +   +  +N+  ++   C  G  E A     +M  
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT--LVHGHCRAGQTERARELLSDMVA 388

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P++  Y +++ G  K  +  EA     +MK    +P   TY  LI  +      D 
Sbjct: 389 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDG 448

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                  M   G SPDH+ Y  L  E   +G   R
Sbjct: 449 GLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSAR 483



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P    Y  +I G +K GK N+A     ++    ++P +  Y  LI        +D+  
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
                M   GC P  +TYN++I      G+L+      K M+
Sbjct: 66  ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMI 107


>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 18/289 (6%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  FQ+M+G    KP++  YN ++  +++     +      ++ E  +SP   T++
Sbjct: 164 LAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFN 223

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK + C PD IT+NLLI  +       +ME  +KS+L  
Sbjct: 224 GVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRS 283

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKEDLVRKLAEVYIKNY--MF 330
           +      T  +++  Y    + DK E  +KR+ +   TP     V   + +Y+  +    
Sbjct: 284 KERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTP---SFVTHESLIYMYGFCDCV 340

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANII 389
           SR   L D+L       ++     +L   C+    +  DS+     S K+  + +T  ++
Sbjct: 341 SRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLL 400

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
             AY K    + L  LL  +    + P+          +R   D  GA+
Sbjct: 401 YKAYTKANQKELLDKLLKHMDKDGIVPN----------KRFFLDALGAV 439



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G    A+  F EM     +P   +YN++I    H   K     +A+ +  +
Sbjct: 114 KLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKALAKAIGYFQK 173

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L++A+ + +  ++++   K +     SPD  T+N ++  +   G
Sbjct: 174 MKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNG 233

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           +++ ME     M + +      T   ++D+Y       KME+ +K LL S    KE    
Sbjct: 234 MIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRS----KERASL 289

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVR----- 372
                 I NY  +RL D  +D+  R+  T++ +    ++H  L+   G  D V R     
Sbjct: 290 PTFNSMILNYGKARLKDKAEDVFKRM--TDMGYTPSFVTHESLIYMYGFCDCVSRAAQLF 347

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+  +K    V+T N +L  Y      +    L     +  + PD  T  +LY A
Sbjct: 348 DELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKA 403



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 82/214 (38%), Gaps = 35/214 (16%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F   K +E+ + N      ++    +   +E+    F++++   + P +  +N ++  Y 
Sbjct: 171 FQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYG 230

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-------------------- 225
           K G   E    L  MK     P   T++ LI +YGK + +                    
Sbjct: 231 KNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLP 290

Query: 226 ---------------DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
                          D+ +   K M   G +P  +T+  LI  +     + R    +  +
Sbjct: 291 TFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQLFDEL 350

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +  + H++ ST+ A+LD Y   G+  + +  ++R
Sbjct: 351 VESKAHIKVSTLNAMLDVYCINGLPQEADSLFER 384


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 17/310 (5%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +M++   KS +  FN   +I +LC+EG +++A      ME   +KP++  YN++IHGY  
Sbjct: 226 EMFRLKIKSTVYTFNI--MINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCS 283

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+   A + L+ MK   + P S TY  LI    K    +E    L+ MK  G  P  +T
Sbjct: 284 RGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVT 343

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN LI  +   G L +  G    M+ + +    ST   ++ A    G +D+ +   K + 
Sbjct: 344 YNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMG 403

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
           +S           L   Y +     +  +L D++ S+  +  LV    L+    +LS R 
Sbjct: 404 DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIY---VLSKRN 460

Query: 367 --------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                    + ++RE  S     ++   N ++  +    +      LL E+  R++ PD 
Sbjct: 461 RMKAADDLFEKIIREGASP----DLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516

Query: 419 VTIGILYDAR 428
           VT   L   R
Sbjct: 517 VTYNTLMQGR 526



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F + K ++K  I  +E     ++   C EG +EEA    +EM+   ++P    YN++I
Sbjct: 499 RAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLI 558

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GYSK G  N+A    +EM  +  +P   TY+ LIQ   K +  D  +  LK M   G +
Sbjct: 559 SGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGIT 618

Query: 242 PDHITYNLLIQ 252
           PD  TY  LI+
Sbjct: 619 PDDSTYFSLIE 629



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 127/320 (39%), Gaps = 45/320 (14%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAF 162
           F  +IR      R     + FDM K  EK    +I  FN+  ++ +  +    E     +
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMK--EKGVVPKIETFNA--MLSLFLKLNQTETVWVLY 224

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            EM    +K ++  +N +I+   K GK  +A  F+  M+ + + P   TY+ +I  Y   
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
              +   M L +MK  G  PD  TY  LI      G L+   G  + M    +   + T 
Sbjct: 285 GRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             ++D Y N G L K   +           ++++VR+     +  Y              
Sbjct: 345 NTLIDGYCNKGDLVKAFGY-----------RDEMVRRAILPTVSTY-------------- 379

Query: 343 RIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
                       LL HA  L  +    D ++++M  + +  +  T NI++  Y +  + K
Sbjct: 380 -----------NLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAK 428

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               L  E+ ++ ++P +VT
Sbjct: 429 KAFNLHDEMISKGIQPTLVT 448



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L +   M+ A   F+++      P L ++N++I G+   G  + A   L EM + N
Sbjct: 452 LIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRN 511

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           + P   TY+ L+Q   +    +E    LK MK  G  PDHI+YN LI  ++  G
Sbjct: 512 IVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRG 565


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 27/306 (8%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N F    +IG LC E  + +A + F EM    L  S+  YN++I GY K+G+ + A  
Sbjct: 208 RPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFK 267

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               MKE +++P   T++ L+    K +   E    LK M+++G  PD  TY++L     
Sbjct: 268 MRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFD--- 324

Query: 256 CAGLLKRMEGT-----YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
             GLL+  +G      Y+    K + + + T   +L+     G ++K E+  K+   +  
Sbjct: 325 --GLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKF--TEN 380

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR--------LLSHACLL 362
            L  D V  +   ++  Y   R+ D+   + + I R E  + LR        L+   C +
Sbjct: 381 GLVADEV--IYNTFVNGY--CRIGDMNKAILT-IERME-SFGLRPNSITFNSLIDKFCDM 434

Query: 363 SHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                 +  V++M    V  +V T N ++  Y K+  F     +L ++    VKP++V+ 
Sbjct: 435 KEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSY 494

Query: 422 GILYDA 427
           G L + 
Sbjct: 495 GSLINC 500



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 20/283 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++G + EA    ++M    + P+ ++YN +I G   +GK  +AL F +EM    
Sbjct: 497 LINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSE 556

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ LI    K     E +  L  +   G SPD ITYN LI  +A AG + +  
Sbjct: 557 ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCL 616

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G Y++M    +     T   ++      G ++ +EK Y  +L          +  L +  
Sbjct: 617 GLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQ---------MNLLPDRV 666

Query: 325 IKNYMFSRLDDLGDD----------LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           + N M     ++G+           L   I   ++ +   +L H        I  +V  M
Sbjct: 667 VYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNM 726

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           ++ ++     T +I++  +  +KDF    V   E+   +  P+
Sbjct: 727 KAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPN 769



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 76/159 (47%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G M +A+   + ME F L+P+   +NS+I  +  + + ++A  ++ +M E  ++P  
Sbjct: 397 CRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSV 456

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY+ LI  YGK   +D     L+ M+  G  P+ ++Y  LI      G +   E   + 
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRD 516

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           M+ + +   +     ++D     G +    +F+  ++ S
Sbjct: 517 MICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS 555



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I   C+   M++A    ++M    + PS+E YN++I GY K+  F+    
Sbjct: 418 RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQ 477

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M+E+ + P   +Y  LI    K     E ++ L+ M   G  P+   YN+LI    
Sbjct: 478 ILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSC 537

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             G +K     +  M+   +     T   ++D     G L + E F  ++ +S
Sbjct: 538 MVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSS 590



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%)

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M+   V  N+ T N +L    KM+  K  R LL E+      PD  T  IL+D      D
Sbjct: 272 MKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDD 331

Query: 434 GTGALEMWKR 443
           G GA+E++++
Sbjct: 332 GNGAMELYEQ 341


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 134/293 (45%), Gaps = 3/293 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I     +S+S    +VF   ++ +K + N      ++     EGL E+A   F++++  
Sbjct: 209 LINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEA 267

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P +  YN+++  YS+ G    A    + M+ M   P   +Y+ ++ AYG+  ++++ 
Sbjct: 268 GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 327

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               ++MK  G +P   ++ LL+  ++ AG + + E     M    +   +  + ++L+ 
Sbjct: 328 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 387

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           Y   G  +KME+    +     P        L  +Y +   F+R+++L   L +R    +
Sbjct: 388 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 447

Query: 349 LV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA-NIILLAYLKMKDF 399
           +V W  R+ +++    +     V  EM  A    +  TA N++L   + M  F
Sbjct: 448 VVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKNVLLKVAIFMASF 500



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 44/311 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  GL+E+A   F EM  +   PS  +YN+ I G  K G   +A+     MK     P +
Sbjct: 144 CTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPST 203

Query: 210 DTYDGLIQAYGKY-KMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            TY  LI  YGK  K Y    M LK+   M+   C P+  T+  L+  FA  GL ++ E 
Sbjct: 204 ATYTMLINLYGKASKSY----MALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEE 259

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-----------------S 308
            ++ +    +        A+++AY   G      + +  + +                  
Sbjct: 260 IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYG 319

Query: 309 RTPLKED------LVRKLA------------EVYIKNYMFSRLDDLGDDL-ASRIGRTEL 349
           R  L ED      ++++L               Y +    ++ +++ + +  S I     
Sbjct: 320 RAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTF 379

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           V    L  +  L     ++ V+  ME      +++T NI++  Y +   F  +  L   L
Sbjct: 380 VLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSL 439

Query: 410 PTRHVKPDIVT 420
           P R++ PD+VT
Sbjct: 440 PARNLIPDVVT 450



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 32/262 (12%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEID----MCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +LSP   T+D +I    + ++  + D    +C  ++      PD I YNLLI  +    L
Sbjct: 54  SLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSL 113

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            K+ E TY  +L  R      T   +L AY   G+L+K E  +  +     P    +   
Sbjct: 114 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVY-- 171

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSHRGIDS-------VV 371
               YI   M         ++  R+ R     C     ++  L++  G  S       V 
Sbjct: 172 --NAYIDGLMKGGDTQKAVEIFERMKRDR---CQPSTATYTMLINLYGKASKSYMALKVF 226

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM S K + N+ T   ++ A+ +    +    +  +L    ++PD+     L       
Sbjct: 227 HEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL------- 279

Query: 432 FDGTGALEMWKRIGFLFKTVEI 453
                 +E + R GF +   EI
Sbjct: 280 ------MEAYSRAGFPYGAAEI 295



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 66/362 (18%), Positives = 129/362 (35%), Gaps = 66/362 (18%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE- 227
           +  P +  YN +I  Y +   + +A     E+ E    P  DTY  L++AY    + ++ 
Sbjct: 93  SFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKA 152

Query: 228 ----------------------IDMCLK------------MMKLDGCSPDHITYNLLIQE 253
                                 ID  +K             MK D C P   TY +LI  
Sbjct: 153 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 212

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +  A         +  M +++      T  A+++A+   G+ +K E+ +++L  +     
Sbjct: 213 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 272

Query: 314 EDLVRKLAEVYIK---NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
                 L E Y +    Y  + +  L   +     R      +     A L  H    +V
Sbjct: 273 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL--HEDAQAV 330

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
              M+   +   + +  ++L AY +         +++++    +KPD   +  +      
Sbjct: 331 FEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM------ 384

Query: 431 GFDGTGALEMWKRIGFLFK-------------TVEINTDPLVLAVYGKGHFLRYCEEVYS 477
                  L ++ R+G   K               +I+T  +++ +YG+  F    EE++ 
Sbjct: 385 -------LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFR 437

Query: 478 SL 479
           SL
Sbjct: 438 SL 439


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 124/281 (44%), Gaps = 10/281 (3%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----KFNEALLFLNEM 200
            +I  LC+ G +E+A    + M+       +  YN++IHG  + G    +   A     EM
Sbjct: 1773 LINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEM 1832

Query: 201  KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
             +   +P S TY  +I A  + KM ++    L +M  +GC+ D +TYN+LI  FA AG++
Sbjct: 1833 VDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMM 1892

Query: 261  KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
             +    +  M T+       T  +I+D +   G +++  K +   + +R        R  
Sbjct: 1893 DKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAE-MKARGIFPNG--RTY 1949

Query: 321  AEVYIKNYMFSRLDDLGDDLAS--RIGRTELVWCLRLLSHACLLSHRGID-SVVREMESA 377
              +        R+ D    L    + G  + +  + L+S  C L    +   ++REM   
Sbjct: 1950 TSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREMLEK 2009

Query: 378  KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
              + N+ T N++  A  K  +    ++++ EL  +H  P +
Sbjct: 2010 GFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSPPL 2050



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 14/204 (6%)

Query: 106  FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
            F  ++ FL N  + ++  Q+          + N F    I+   CE+G   +A+   + M
Sbjct: 1664 FNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHM 1723

Query: 166  EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
            +   +  + ++YN I+    K GK  EAL  L+ M   + +P   TY+ LI A  K    
Sbjct: 1724 KKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRL 1783

Query: 226  DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---------SMLTKRMH 276
            ++    ++MM+   C  D +TYN LI      GL ++  G ++          M+ K   
Sbjct: 1784 EDAQGLVEMMQARECPTDIVTYNTLIH-----GLCRKGNGRFRVERAFRLFEEMVDKGHT 1838

Query: 277  LRSSTMVAILDAYMNFGMLDKMEK 300
              S T   ++DA +   M ++ +K
Sbjct: 1839 PTSVTYTVVIDALLRVKMDEQAQK 1862


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 130/281 (46%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + GL  E    F+EM+     P  + Y S+I  YS+ G F++++     M E  
Sbjct: 430 LLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAG 489

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  +   +++ +     M+   C PD ++Y+ L+  +A A  L +M+
Sbjct: 490 IYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMK 549

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + +  +++      +  ++        L + EK +  L   R  L  +++  +  VY
Sbjct: 550 ALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVY 609

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            KN M  +++++   +  S I  +   +   +  ++ L      ++++ E++S+  R + 
Sbjct: 610 GKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDR 669

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + N ++ AY +    K    L SE+ +  + PDIVT  I 
Sbjct: 670 YSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 710



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 157/362 (43%), Gaps = 44/362 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I    ++GL++EA    +EME   ++P +  Y ++I G  + GK + A+   +E
Sbjct: 322 YNS--LISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDE 379

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY+ LI+ +G    + E+      ++  G  PD +T+N L+  F   GL
Sbjct: 380 MLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGL 439

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              + G +K M          T V+++ +Y   G+ D+  + YKR++ +           
Sbjct: 440 DSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGI--------- 490

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             ++   N + S L        +R GR E                   + +  EME+   
Sbjct: 491 YPDISTYNAVLSAL--------ARGGRWEQA-----------------EKLFAEMENLDC 525

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP--DIVTIGILYDARRIGFDGT-- 435
           R +  + + +L AY   K    ++ L  ++    ++    +V   +L +++      T  
Sbjct: 526 RPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEK 585

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             LE+ +R      +++IN    +++VYGK   ++  EE+ S ++  S      TY +L+
Sbjct: 586 AFLELGRR----RCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLM 641

Query: 496 DL 497
            +
Sbjct: 642 HM 643



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 121/313 (38%), Gaps = 47/313 (15%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK--------------------------- 189
           +AV  F+ M    ++P++  YN ++H YSKI                             
Sbjct: 196 DAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSMKNDGIPLDRYTYNTL 255

Query: 190 ---------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
                    + EA    +EM+     P   T++ L+  YGK +M+DE    LK M+L GC
Sbjct: 256 ISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGC 315

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            P  +TYN LI  +   GLLK      + M  K +     T   ++      G +D    
Sbjct: 316 PPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIG 375

Query: 301 FYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
            Y  +L  R   K +L     L +++     F  +  + DDL S     ++V    LL+ 
Sbjct: 376 TYDEML--RNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLA- 432

Query: 359 ACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             +    G+DS    V +EM+ +       T   ++ +Y +   F     +   +    +
Sbjct: 433 --VFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGI 490

Query: 415 KPDIVTIGILYDA 427
            PDI T   +  A
Sbjct: 491 YPDISTYNAVLSA 503



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 117/273 (42%), Gaps = 8/273 (2%)

Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G L +EA + F EM     +P    +NS++  Y K    +EA+  L EM+     P 
Sbjct: 259 CRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPS 318

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI +Y K  +  E     + M++ G  PD ITY  LI     AG +    GTY 
Sbjct: 319 VVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYD 378

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            ML         T  A++  +   G   +M   +  L ++      D+V    L  V+ +
Sbjct: 379 EMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAG--FVPDVVTWNTLLAVFGQ 436

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLS--HACLLSHRGIDSVVREMESAKVRWNVT 384
           N + S +  +  ++       E    + L+S    C L  + ++ + + M  A +  +++
Sbjct: 437 NGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSME-IYKRMIEAGIYPDIS 495

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           T N +L A  +   ++    L +E+     +PD
Sbjct: 496 TYNAVLSALARGGRWEQAEKLFAEMENLDCRPD 528



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+G ++  S   YNS++H YS++G   +    L E+K     P   +Y+ +I AYG+   
Sbjct: 625 MKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQ 684

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       MK  G  PD +TYN+ ++ +    + +      + M+T+       T  +
Sbjct: 685 MKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNS 744

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           IL  Y   G +   + F   L
Sbjct: 745 ILQEYCRHGKIADAKSFLSNL 765



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 113/285 (39%), Gaps = 11/285 (3%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-YDEID 229
           +P    Y +++  +S+  +F +A+     M    + P   TY+ ++  Y K  + + ++ 
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  MK DG   D  TYN LI       L K     +  M          T  ++LD Y
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
               M D+     K +     P        L   Y+K+ +     +L +++  +  + ++
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 350 VWCLRLLSHACLLSHRG-IDSVV---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           +    L+S    L   G ID+ +    EM     + N+ T N ++  +     F  +  +
Sbjct: 355 ITYTTLISG---LDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAV 411

Query: 406 LSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGFL 447
             +L +    PD+VT   L   +    +  + +G  +  K+ G++
Sbjct: 412 FDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYV 456



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R + ++   +I     +G M+EA R F EM+   L P +  YN  +  Y     F EA+
Sbjct: 665 ARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAI 724

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             +  M      P   TY+ ++Q Y ++
Sbjct: 725 DLVRYMVTRGCKPNERTYNSILQEYCRH 752


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 170/399 (42%), Gaps = 18/399 (4%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + +  F+ N  RS ++ +  +++K++    +  +  N   ++    + G   +A    QE
Sbjct: 333 FVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQE 392

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M   +    +  YN +I+G  K+GK+ E+  F   M+++ L+P S T++ +I AY K   
Sbjct: 393 MTEKSSGFDVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGN 451

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
                  L  MK  G  P+ IT N+L+Q    AG +++       ML    H   +T  A
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKA 511

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LDA       D +   + +L+     L       L   + +  M  R   +  D+  + 
Sbjct: 512 VLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
              +++    L+   C+ SH +   +V  +M +  V  NV T NI+L      +  K   
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI-------GFLFKTVEINTD 456
            L++++  R + P+  T    YD    G    G ++   ++       GF+ KT   N  
Sbjct: 632 GLVNQMKERGLVPNATT----YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN-- 685

Query: 457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            ++++ + KG  +   +E+   ++         TY  LI
Sbjct: 686 -VLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +  AV   + M+     P +  YN++++G+ KIG    A   + E+  +N
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 205 LSPQSDTYDGLIQAYGKYK-------MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           L P   TY  LI AY K +       MYDE       M +    PD +TY  ++     +
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDE-------MTVKSLVPDVVTYTCIMNGLCKS 135

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G ++  +  ++ M    +     +   ++D+    G + +      R++         + 
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREME 375
             L +   K  M +  +D+   L         V    L+   C L   ++G + +++EME
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKG-ELLLQEME 254

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +  NV   + I+  Y K         ++ ++  R++ P++   G L D 
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG 306



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    +++A     +M    + P++E YN ++ G S      EA   +N+MKE  L P +
Sbjct: 587 CISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNA 646

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
            TYD L+  +GK     E   C+K+   M   G  P   TYN+LI  FA    + + +  
Sbjct: 647 TTYDILVSGHGKIGNMKE---CVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKEL 703

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            + M  + +   SST   ++  +       ++ K  KR
Sbjct: 704 MQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR 741



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 122/277 (44%), Gaps = 2/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G+   A   FQ +   +L P+   Y+++I G+ K+G  N+  L L EM+E ++ P 
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  ++  Y K  + +E    ++ M      P+   Y  LI  +  A         +K
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-VRKLAEVYIKN 327
            M ++ +   +  + + ++     G +++ ++ +K ++ SR  L + +    + + + K 
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMM-SRGLLPDRVNYTSMMDGFFKA 380

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
              S   ++  ++  +    ++V    L++    L     +S    M    +  +  T N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ AY K  +  +   LL+E+ +  +KP+ +T  IL
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 131/313 (41%), Gaps = 31/313 (9%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++ S+E +N +I GY + G+ + A+  L  MK    +P   TY+ L+  + K        
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  + L    P+ ITY  LI  +  +  L+     Y  M  K +     T   I++  
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 290 MNFGMLDKMEKFYKRLLN--------SRTPLKEDLVRK--LAEVYI-KNYMFSRLDDLGD 338
              G +++ +  ++ +          S   L + L ++  +AE ++ +  M  R   +G 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR--GIGF 190

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           D+       + ++   + ++A        + + + +    +  N  T + ++  + K+ D
Sbjct: 191 DVVVYTALMDGLFKAGMANNA--------EDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
                +LL E+  +H+ P+++    + D    G+   G L   + +  + K V+ N  P 
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVD----GYTKKGLLN--EAMDVMRKMVQRNILPN 296

Query: 459 VLAVYGK---GHF 468
           V  VYG    G+F
Sbjct: 297 VF-VYGTLIDGYF 308



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+    ++GL+ EA+   ++M    + P++ +Y ++I GY K  +   AL    EMK   
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           L   +   D  +    +    +E D   K M   G  PD + Y  ++  F  AG
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAG 381



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ +   +++ +E+  +  N F+   +I  L +EG + EA      M    +   + 
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y +++ G  K G  N A      + E +L P   TY  LI  + K    ++ ++ L+ M
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +     P+ I Y+ ++  +   GLL       + M+ + +         ++D Y
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 27/364 (7%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           RQ  QVF   +   +  + E N   II +L  EG +  A   F+ M    + PS+  Y +
Sbjct: 11  RQALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTA 70

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK--YKMYDEIDMCLKMMKL 237
           ++ GY+K G   EA      MKE   SP   TY+ LI A  K  Y++ D + +  + MK 
Sbjct: 71  LLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGL-FEEMKQ 129

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+ ITYN ++    C  L        K M          +   ++++    G LD+
Sbjct: 130 AGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDE 189

Query: 298 MEKFYKRLLN-SRTPLKEDLVRKLAEVYIKN-------YMFSRLDDLG--DDLASRIGRT 347
             + ++ +    R+P        L + Y +         +F  ++D G   DL +    T
Sbjct: 190 AVELFEEMKELGRSP-NSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTY--NT 246

Query: 348 ELVWCLR--LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
            +  C R  L + A        + V  EM+      +  T N +L AY K       R L
Sbjct: 247 VIDMCGRGGLFAEA--------EGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDL 298

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK 465
           L  +      PD+ T  IL DA       + A++++  +     +  + +   ++ +YG+
Sbjct: 299 LKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGR 358

Query: 466 -GHF 468
            G+F
Sbjct: 359 LGYF 362



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 4/177 (2%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R+ ++P +  +++ ++++ +  N+     ++       L + A +  +EM+     P+
Sbjct: 111 TKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPN 170

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y ++I+   + G+ +EA+    EMKE+  SP S TY+ L++AY +   Y++  MCL 
Sbjct: 171 VISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKA-MCLF 229

Query: 234 M-MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           + M+ +GC PD  TYN +I      GL    EG +  M  K       T   +LDAY
Sbjct: 230 VGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAY 286



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 1/197 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  +I  L  S R  +  ++F+  K + +S  N +    ++     EG  E+A+  F  M
Sbjct: 174 YTTMINSLGRSGRLDEAVELFEEMKELGRSP-NSWTYNSLLKAYAREGRYEKAMCLFVGM 232

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E     P L  YN++I    + G F EA     EM+    +P   TY+ ++ AY K+   
Sbjct: 233 EDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRR 292

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
                 LK MK  GC+PD  TYN+L+     AG        +  +          +  A+
Sbjct: 293 GRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSAL 352

Query: 286 LDAYMNFGMLDKMEKFY 302
           ++ Y   G  ++ E+ +
Sbjct: 353 INMYGRLGYFEEAERAW 369



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 2/190 (1%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W     LK  +R  +  +   ++  +E      + +    +I M    GL  EA   F E
Sbjct: 207 WTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLE 266

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     P    YN+++  YSK  +   A   L  MK    +P   TY+ L+ A GK   
Sbjct: 267 MQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGS 326

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       +K  G SP+ ++++ LI  +   G  +  E  +  M        ++    
Sbjct: 327 ASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCG 386

Query: 285 ILDAYMNFGM 294
           ++++Y + GM
Sbjct: 387 LMNSYSHHGM 396



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            + M+     P L  YN ++    K G  +EA+   +E+K    SP   ++  LI  YG+
Sbjct: 299 LKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGR 358

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              ++E +     M+  GC P+   Y  L+  ++  G+ K
Sbjct: 359 LGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYK 398



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G   EA++ F E++     P+L  ++++I+ Y ++G F EA     EM+     P +  Y
Sbjct: 325 GSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAY 384

Query: 213 DGLIQAYGKYKMY 225
            GL+ +Y  + MY
Sbjct: 385 CGLMNSYSHHGMY 397


>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 580

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY----SKIGKFNEALLFLNE 199
           K+I ++ ++G    A+  F EM     +P   +YN++I  +     KI    +A+ +  +
Sbjct: 177 KLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQK 236

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L++A+ + +  ++++   K +     SPD  T+N ++  +   G
Sbjct: 237 MKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNG 296

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           +++ ME     M + +      T   ++D+Y       KME+ +K LL+S    KE    
Sbjct: 297 MIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHS----KERPSL 352

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVR----- 372
                 I NY  +RL D  +D+  ++  T++ + L  ++H  ++   G  D V R     
Sbjct: 353 PTFNSMILNYGKARLKDKAEDVFKKM--TDMGYTLSFVTHESMIYMYGFCDCVSRAAQLF 410

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+  +KV   V+T N +L  Y      +    L     +  + PD  T  +LY A
Sbjct: 411 DELVESKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFKLLYKA 466



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 30/295 (10%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  FQ+M+G    KP++  YN ++  +++     +      ++ E  +SP   T++
Sbjct: 227 LAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFN 286

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK + C PD IT+NLLI  +       +ME  +KS+L  
Sbjct: 287 GVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHS 346

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--MFS 331
           +      T  +++  Y    + DK E  +K++ +    L    V   + +Y+  +    S
Sbjct: 347 KERPSLPTFNSMILNYGKARLKDKAEDVFKKMTDMGYTL--SFVTHESMIYMYGFCDCVS 404

Query: 332 RLDDLGDDL--------ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           R   L D+L         S +     V+CL  L           DS+     S K+  + 
Sbjct: 405 RAAQLFDELVESKVHIKVSTLNAMLDVYCLNGLPQEA-------DSLFERAISIKIHPDS 457

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           +T  ++  AY K    + L  LL     +H+  D    GI+ + +R   D  GA+
Sbjct: 458 STFKLLYKAYTKANQKELLDKLL-----KHMDKD----GIIPN-KRFFLDALGAV 502



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 101/227 (44%), Gaps = 2/227 (0%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+  +++R + QV  ++K++++S ++   +    ++    + G++ E       M+   
Sbjct: 253 LLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQ 312

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            KP L  +N +I  Y K   F +       +      P   T++ +I  YGK ++ D+ +
Sbjct: 313 CKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLPTFNSMILNYGKARLKDKAE 372

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              K M   G +   +T+  +I  +     + R    +  ++  ++H++ ST+ A+LD Y
Sbjct: 373 DVFKKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLFDELVESKVHIKVSTLNAMLDVY 432

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
              G+  + +  ++R ++ +        + L + Y K      LD L
Sbjct: 433 CLNGLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKELLDKL 479



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 88/211 (41%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F   K +E+ + N      ++    +   +E+    F++++   + P +  +N ++  Y 
Sbjct: 234 FQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYG 293

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YGK + + +++   K +      P   
Sbjct: 294 KNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLP 353

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L  + E  +K M      L   T  +++  Y     + +  + +  L
Sbjct: 354 TFNSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLFDEL 413

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
           + S+  +K   +  + +VY  N +    D L
Sbjct: 414 VESKVHIKVSTLNAMLDVYCLNGLPQEADSL 444


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 13/280 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC++ L+ EAV  F +M+G  + P++  Y S+IHG   +G++ EA   LNEMK  N
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    +  LI    K     E  + LK M   G  PD  TYN L+  +     +    
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR 356

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK----RLLNSRTPLKEDLVRKL 320
             ++ M++K       +   +++ Y     +D+ ++ +     R L   T     L+  L
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESA 377
            +           ++L  D+ S      LV    LL   CL     +D  +   R ME++
Sbjct: 417 CQARRP----LEAEELFKDMHSNGYPPNLVTYSILLD--CLSKQGYLDQAMGLFRAMENS 470

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            ++ ++ T NI++    K   FK  R L +EL  + ++P+
Sbjct: 471 GLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 124 QVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +VF++   I K R+ + F+   ++   C+   ++EA + F EM    L P    YN++I 
Sbjct: 357 KVFEVM--ISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLIS 414

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G  +  +  EA     +M      P   TY  L+    K    D+     + M+  G  P
Sbjct: 415 GLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKP 474

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D +TYN++I      G  K     +  +  K +   +      +D     G+LD+  K +
Sbjct: 475 DLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAF 534

Query: 303 KRL 305
           +++
Sbjct: 535 RQM 537



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L ++G +++A+  F+ ME   LKP L  YN +I G  K GKF +A     E+    L P 
Sbjct: 451 LSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           +      I    K  + DE     + M+ D CSP     N
Sbjct: 511 NWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 128/329 (38%), Gaps = 42/329 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C EG +  A+  F  M     KP++  Y+ II G  ++GK  E +  L
Sbjct: 160 NVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLL 219

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF--- 254
             MK +   P    Y+ ++    K ++ +E       MK  G  P  +TY  LI      
Sbjct: 220 EHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNL 279

Query: 255 ----ACAGLLKRMEG-------TYKSMLTKRMHLRSSTMVA--ILDAYMNFGMLDKMEKF 301
                  GLL  M+G          S+L   M        A  IL      G+   +   
Sbjct: 280 GRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVAT- 338

Query: 302 YKRLLNSRTPLKEDLV--RKLAEVYIKN------YMFS----------RLDD---LGDDL 340
           Y  L+N    L+ ++V  RK+ EV I        + FS          R+D+   L D++
Sbjct: 339 YNTLMNGYC-LRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEM 397

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKD 398
             R    + V    L+S  C  + R +++  + ++M S     N+ T +I+L    K   
Sbjct: 398 THRGLIPDTVSYNTLISGLC-QARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGY 456

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                 L   +    +KPD+VT  I+ D 
Sbjct: 457 LDQAMGLFRAMENSGLKPDLVTYNIMIDG 485



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 160/408 (39%), Gaps = 43/408 (10%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R +    V  + K +E + I+    +   +I   C    ++       ++    L+P++ 
Sbjct: 103 RMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVI 162

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            ++++I+G+   GK   A+   + M      P   +Y  +I+   +     E+   L+ M
Sbjct: 163 TFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHM 222

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN---- 291
           K+ GC PD + YN ++       L+      +  M    +     T  +++    N    
Sbjct: 223 KVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRW 282

Query: 292 ---FGMLDKME--KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
              FG+L++M+       L+     +  D++ K  EV     +   + ++G +       
Sbjct: 283 KEAFGLLNEMKGGNIMPDLVAFSVLI--DIMCKEGEVSEARVILKTMTEMGVEPDVATYN 340

Query: 347 TEL-VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           T +  +CLR+     ++  R +  V   M S     +V + +I++  Y K K     + L
Sbjct: 341 TLMNGYCLRME----VVEARKVFEV---MISKGRMPDVFSFSILVNGYCKAKRIDEAKQL 393

Query: 406 LSELPTRHVKPDIVT----IGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
             E+  R + PD V+    I  L  ARR        LE  +    LFK +  N  P  L 
Sbjct: 394 FDEMTHRGLIPDTVSYNTLISGLCQARR-------PLEAEE----LFKDMHSNGYPPNLV 442

Query: 462 VY-------GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
            Y        K  +L     ++ ++E    +    TY  +ID + K+ 
Sbjct: 443 TYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYG 490


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 170/399 (42%), Gaps = 18/399 (4%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + +  F+ N  RS ++ +  +++K++    +  +  N   ++    + G   +A    QE
Sbjct: 333 FVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQE 392

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M   +    +  YN +I+G  K+GK+ E+  F   M+++ L+P S T++ +I AY K   
Sbjct: 393 MTEKSSGFDVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGN 451

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
                  L  MK  G  P+ IT N+L+Q    AG +++       ML    H   +T  A
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKA 511

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +LDA       D +   + +L+     L       L   + +  M  R   +  D+  + 
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
              +++    L+   C+ SH +   +V  +M +  V  NV T NI+L      +  K   
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI-------GFLFKTVEINTD 456
            L++++  R + P+  T    YD    G    G ++   ++       GF+ KT   N  
Sbjct: 632 GLVNQMKERGLVPNATT----YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN-- 685

Query: 457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            ++++ + KG  +   +E+   ++         TY  LI
Sbjct: 686 -VLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 17/287 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  AV   + M+     P +  YN++++G+ KIG    A   + E+  +NL P  
Sbjct: 28  CRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNV 87

Query: 210 DTYDGLIQAYGKYK-------MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            TY  LI AY K +       MYDE       M +    PD +TY  ++     +G ++ 
Sbjct: 88  ITYTTLIDAYCKSQCLEDALYMYDE-------MTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            +  ++ M    +     +   ++D+    G + +      R++         +   L +
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMD 200

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVR 380
              K  M +  +D+   L         V    L+   C L   ++G + +++EME   + 
Sbjct: 201 GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKG-ELLLQEMEEKHIF 259

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            NV   + I+  Y K         ++ ++  R++ P++   G L D 
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG 306



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 122/277 (44%), Gaps = 2/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G+   A   FQ +   +L P+   Y+++I G+ K+G  N+  L L EM+E ++ P 
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  ++  Y K  + +E    ++ M      P+   Y  LI  +  A         +K
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-VRKLAEVYIKN 327
            M ++ +   +  + + ++     G +++ ++ +K ++ SR  L + +    + + + K 
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMM-SRGLLPDRVNYTSMMDGFFKA 380

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
              S   ++  ++  +    ++V    L++    L     +S    M    +  +  T N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ AY K  +  +   LL+E+ +  +KP+ +T  IL
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 131/313 (41%), Gaps = 31/313 (9%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++ S+E +N +I GY + G+ + A+  L  MK    +P   TY+ L+  + K        
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  + L    P+ ITY  LI  +  +  L+     Y  M  K +     T   I++  
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 290 MNFGMLDKMEKFYKRLLN--------SRTPLKEDLVRK--LAEVYI-KNYMFSRLDDLGD 338
              G +++ +  ++ +          S   L + L ++  +AE ++ +  M  R   +G 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR--GIGF 190

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           D+       + ++   + ++A        + + + +    +  N  T + ++  + K+ D
Sbjct: 191 DVVVYTALMDGLFKAGMANNA--------EDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
                +LL E+  +H+ P+++    + D    G+   G L   + +  + K V+ N  P 
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVD----GYTKKGLLN--EAMDVMRKMVQRNILPN 296

Query: 459 VLAVYGK---GHF 468
           V  VYG    G+F
Sbjct: 297 VF-VYGTLIDGYF 308



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+    ++GL+ EA+   ++M    + P++ +Y ++I GY K  +   AL    EMK   
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           L   +   D  +    +    +E D   K M   G  PD + Y  ++  F  AG
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAG 381



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ +   +++ +E+  +  N F+   +I  L +EG + EA      M    +   + 
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y +++ G  K G  N A      + E +L P   TY  LI  + K    ++ ++ L+ M
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +     P+ I Y+ ++  +   GLL       + M+ + +         ++D Y
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 187/441 (42%), Gaps = 66/441 (14%)

Query: 51  SSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTK-DHFW-- 107
           S  P L  HS+  ++ L+    +      L + L  +    ++ ++   D +K +  W  
Sbjct: 36  SDPPILGIHSSNLSSDLIPVGPKRHTKKELSRFL--RTDAAIKAIEQKADSSKYNRLWPK 93

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQE 164
           AV+  L ++ + R+      +++ + K    E   Q   K++ ML +    EEA   F+ 
Sbjct: 94  AVLEALDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEV 153

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYK 223
           M+   L+P++++Y +++  Y + G   +A   ++EMK + +  P   TY  LI    K  
Sbjct: 154 MQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLH 213

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--- 280
            +D I   L  M   G     +T+N +I  +  A + + ME +    LT  + + +S   
Sbjct: 214 RFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENS----LTNMIEIGNSVPD 269

Query: 281 --TMVAILDAYMNFGMLDKMEKFYK--RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
             T  +++ AY N G ++KMEK+Y   +L+     +K      L + Y K  M+ +++ +
Sbjct: 270 LFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKT--FNILIKSYGKAGMYEKINSV 327

Query: 337 GDDLASR---------------IGRT---------------------ELVWC--LRLLSH 358
            + +  R                GR                       + +C  +   S 
Sbjct: 328 IEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSK 387

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A LL    ++S++R++E++ V  + T  N I+ AY +  D   +  L  E+  R   PD 
Sbjct: 388 AGLLMK--VNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERECMPDN 445

Query: 419 VTIGILYDARRIGFDGTGALE 439
           VT   +  A R    G G  E
Sbjct: 446 VTFATMIQAYR----GQGMTE 462



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 65/139 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II      G +E     F+ M+   +KP+   Y S++  YSK G   +    L +++  +
Sbjct: 346 IIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSD 405

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I AYG+    D++      M+   C PD++T+  +IQ +   G+ +  +
Sbjct: 406 VVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQ 465

Query: 265 GTYKSMLTKRMHLRSSTMV 283
              K ML  + +   + M+
Sbjct: 466 ALEKMMLAAKGNSGGTWMI 484


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P++E Y  +I    K G   +A   L  M E  
Sbjct: 398 LINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKG 457

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+AYG+  +Y+E  +    M   G  P   TYN LIQ FA  GL K  E
Sbjct: 458 VVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESE 517

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     T   +++A+   G  ++  K Y  +  +R    E  +  +  VY
Sbjct: 518 AILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVY 577

Query: 325 -IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
                +    +  G+  A  I  + + +C+ L  +A
Sbjct: 578 CFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYA 613



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 47/317 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+L  EGL+E+    F EM    + PS+  + ++I+ Y + G++  +L  L+ MK+  
Sbjct: 152 MIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKER 211

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I +  +  + ++E+      M+ +G   D +TYN L+   A  GL    
Sbjct: 212 VSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEA 271

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  +++M    +    +T   +++    FG L+++EK  +                    
Sbjct: 272 EMVFRTMNEGGILPDITTYSYLVET---FGKLNRLEKVSE-------------------- 308

Query: 324 YIKNYMFSRLDDLGD--DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
                +   ++  G   D+ S        + + L +HA   S +    V R+M+ A    
Sbjct: 309 -----LLKEMESGGSFPDITS--------YNVLLEAHAQSGSIKEAMGVFRQMQGAGCVP 355

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N  T +I+L  Y +   +  +R L  E+   + +P+  T  IL     I   G G    +
Sbjct: 356 NAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNIL-----INVFGEGGY--F 408

Query: 442 KRIGFLF-KTVEINTDP 457
           K +  LF   VE N +P
Sbjct: 409 KEVVTLFHDMVEENVEP 425



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 3/227 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGL-MEEAVRAFQEMEGFALKPS 173
            R+ Q     ++   ++K R++        +I      GL  EE +  F +M    ++  
Sbjct: 192 GRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQAD 251

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN+++   ++ G  +EA +    M E  + P   TY  L++ +GK    +++   LK
Sbjct: 252 IVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLK 311

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G  PD  +YN+L++  A +G +K   G ++ M        ++T   +L+ Y   G
Sbjct: 312 EMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHG 371

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
             D +   +  +  S T         L  V+ +   F  +  L  D+
Sbjct: 372 RYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDM 418



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+     +EME     P +  YN ++  +++ G   EA+    +M+     P + TY  
Sbjct: 303 LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 362

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  YG++  YD++      MK+    P+  TYN+LI  F   G  K +   +  M+ + 
Sbjct: 363 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 422

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEK 300
           +     T   ++ A    G+ +  +K
Sbjct: 423 VEPNMETYEGLIFACGKGGLHEDAKK 448



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  +NS  +I M  + GL +E+     +M    +  + + +N +I  + + G+F EA
Sbjct: 494 KPTVETYNS--LIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEA 551

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +    EM++    P   T + ++  Y    + +E +     +K  G  P  + Y +++  
Sbjct: 552 IKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAV 611

Query: 254 FACAGLLKRMEGTYKSMLTKRM 275
           +A A            M T R+
Sbjct: 612 YAKADRWDDAHQLLDEMFTNRV 633


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 137/302 (45%), Gaps = 7/302 (2%)

Query: 95  LQHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
           ++ DG   T D +  +I      S+S     +FD  +  ++ + N      ++  L  EG
Sbjct: 251 MKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRT-QRCKPNICTFTALVNALAREG 309

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L E+A   F++M+    +P +  YN+++  YS+ G    A    + M+ M   P   +Y+
Sbjct: 310 LCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 369

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            ++ AYG+  ++++     + MK  G +P   ++ LL+  ++ AG + + E     M   
Sbjct: 370 IMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS 429

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFS 331
            +   +  M ++L+ Y   G   KME  +  +   + P + D+     L  VY +     
Sbjct: 430 GLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTM--QKGPCRADISTYNILINVYGRAGFVE 487

Query: 332 RLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           R+++L   L ++    ++V W  R+ +++    ++    +  +M  A    +  TA ++L
Sbjct: 488 RMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLL 547

Query: 391 LA 392
            A
Sbjct: 548 SA 549



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 14/291 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ GL+E+A   F EM  + L PS  +YN+ I G  K G   +A+   + MK     P +
Sbjct: 201 CKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTT 260

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           DTY  LI  YGK             M+   C P+  T+  L+   A  GL ++ E  ++ 
Sbjct: 261 DTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQ 320

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A++++Y   G      + +  + +            + + Y +  +
Sbjct: 321 MQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 380

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVVREMESAKVRWN 382
                 + +++  RIG T       + SH  LLS           + ++ +M  + ++ +
Sbjct: 381 HEDAQAVFEEM-KRIGITPT-----MKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPD 434

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF 432
               N +L  Y ++  F  +  L S +     + DI T  IL +   R GF
Sbjct: 435 TFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGF 485



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 134/338 (39%), Gaps = 27/338 (7%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDE 227
           P+ + Y  ++  Y K G   +A     EM++  LSP +  Y    DGL++     K  + 
Sbjct: 188 PTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVE- 246

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  MK DGC P   TY +LI  +         +  +  M T+R      T  A+++
Sbjct: 247 ---IFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVN 303

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN---YMFSRLDDLGDDLASRI 344
           A    G+ +K E+ ++++  +           L E Y +    Y  + +  L   +    
Sbjct: 304 ALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEP 363

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
            R      +     A L  H    +V  EM+   +   + +  ++L AY    +      
Sbjct: 364 DRASYNIMVDAYGRAGL--HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCED 421

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE-------INTDP 457
           ++ ++    +KPD   +  + +         G L  + ++  LF T++       I+T  
Sbjct: 422 IIGQMHKSGLKPDTFVMNSMLNL-------YGRLGQFGKMEDLFSTMQKGPCRADISTYN 474

Query: 458 LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           +++ VYG+  F+   EE++  L   + E    T+ + I
Sbjct: 475 ILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRI 512



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 126/307 (41%), Gaps = 17/307 (5%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +    P    Y+ L+ AYG+  +Y +++     +    C P   TY LL++ +  +GL
Sbjct: 146 MNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGL 205

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           L++ E  +  M  ++  L  S +V  A +D  +  G   K  + + R+         D  
Sbjct: 206 LEKAEAVFAEM--RKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTY 263

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVRE 373
             L  VY K        ++ D++ ++  +  +     L++    L+  G+    + +  +
Sbjct: 264 TMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNA---LAREGLCEKAEEIFEQ 320

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF 432
           M+ A    +V   N ++ +Y +         + S +     +PD  +  I+ DA  R G 
Sbjct: 321 MQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 380

Query: 433 --DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
             D     E  KRIG    T  + +  L+L+ Y     +  CE++   +     +   + 
Sbjct: 381 HEDAQAVFEEMKRIGI---TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFV 437

Query: 491 YQNLIDL 497
             ++++L
Sbjct: 438 MNSMLNL 444



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           + G L + G ME+    F  M+    +  +  YN +I+ Y + G           +   N
Sbjct: 444 LYGRLGQFGKMEDL---FSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKN 500

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           L P   T+   I AY + K+Y       + M   GC PD  T  +L+   AC+
Sbjct: 501 LEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLS--ACS 551


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 127/306 (41%), Gaps = 34/306 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++G   +A   F EM+   + P L  YNS+I G+   G++++A   L EM E  
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 205 LSPQSDTYDGLIQAY---GKY----KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +SP   TY+ LI A+   GK+    ++YDE       M   G  P+ ITYN +I  F   
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDE-------MLPRGIIPNTITYNSMIDGFCKQ 373

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLK 313
             L   E  +  M TK       T   ++D Y     +D     + +  +R L + T   
Sbjct: 374 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTY 433

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--------LLSHR 365
             L+     V   N       DL   + S     ++V C  LL   C        L   +
Sbjct: 434 NTLIHGFCLVGDLNAAL----DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFK 489

Query: 366 GIDSVVREMESA----KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            +     +++++     V  +V T NI++   +    F     L  E+P R + PD +T 
Sbjct: 490 AMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 422 GILYDA 427
             + D 
Sbjct: 550 SSMIDG 555



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  K G    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   +  + Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       +D+   +A++    ++     L+   C    + ID    ++
Sbjct: 361 ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  N  T N ++  +  + D      L  ++ +  V PDIVT   L D     
Sbjct: 419 HEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVE---INTDPLVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE   +  + L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 149 LCEEGLMEEAVRAFQEMEGF-----------ALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           LC+ G +++A+  F+ M+              ++P +  YN +I G    GKF EA    
Sbjct: 475 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 534

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    + P + TY  +I    K    DE       M     SP+ +T+N LI  +  A
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 594

Query: 258 G 258
           G
Sbjct: 595 G 595



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 15/222 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C    +++ +    EM    L  +   YN++IHG+  +G  N AL    +
Sbjct: 396 FTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQ 455

Query: 200 MKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMK----------LDGCSPDHITYN 248
           M    + P   T + L+       K+ D ++M   M K           +G  PD +TYN
Sbjct: 456 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYN 515

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +LI      G     E  Y+ M  + +   + T  +++D       LD+  + +  + + 
Sbjct: 516 ILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSK 575

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                      L   Y K     R+DD G +L   +GR  +V
Sbjct: 576 SFSPNVVTFNTLINGYCKA---GRVDD-GLELFCEMGRRGIV 613



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/386 (19%), Positives = 146/386 (37%), Gaps = 70/386 (18%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  + +++HG     + +EAL F ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T+  L+    +     E    L  M  DG  P  ITY  ++      G+ K+ +   
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD-----GMCKKGDTVS 237

Query: 268 KSMLTKRM----HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              L ++M    H+  + ++  AI+D+    G     +  +       T ++E  +    
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI--FP 288

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           +++  N M               GR    W     S A        + +++EM   K+  
Sbjct: 289 DLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERKISP 323

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           +V T N ++ A++K   F     L  E+  R + P+ +T    Y++   GF     L+  
Sbjct: 324 DVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTIT----YNSMIDGFCKQDRLDAA 379

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGH 467
           + + +L  T   + D         G+
Sbjct: 380 EDMFYLMATKGCSPDVFTFTTLIDGY 405



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 121 QIPQVFDMWKNIEKSRIN-----EFNSQK--------IIGMLCEEGLMEEAVRAFQEMEG 167
           ++    +M+K ++KS+++      FN  +        +I  L  EG   EA   ++EM  
Sbjct: 480 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 539

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P    Y+S+I G  K  + +EA      M   + SP   T++ LI  Y K    D+
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDD 599

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  M   G   D I Y  LI  F   G +      ++ M++  ++  + T+  +L 
Sbjct: 600 GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 659

Query: 288 AY 289
            +
Sbjct: 660 GF 661


>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
 gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
          Length = 492

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 35/279 (12%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I ML +    E+A   FQ M      P+LE Y +++  YS+ G+F+EA   L+ MK+ 
Sbjct: 146 KLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMKDT 205

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI++      ++++   L  M   G  P+ +TYN LI  +  A     
Sbjct: 206 PGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPE 265

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME T   ML++       TM + L A+ + G ++ ME  Y++   S           L +
Sbjct: 266 MESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLD 325

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            Y K  M+ ++                                   +V+  M+     W 
Sbjct: 326 SYGKAKMYEKMG----------------------------------AVMEYMQKYYYSWT 351

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           + T N+++ A+ +  D + +  +   + +  +KP+ VT+
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTL 390



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 159 VRAFQEMEGFALK-------PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
            R F EME   LK       P +   NS +  +   G+         + +   + P   T
Sbjct: 260 ARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKT 319

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ L+ +YGK KMY+++   ++ M+    S   +TYN++I  F  AG L++ME  ++ M 
Sbjct: 320 YNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMK 379

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           ++R+     T+ +++ AY   G + K++   + + NS   L       L + Y +    +
Sbjct: 380 SERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAYGRVGCLA 439

Query: 332 RLDDLGDDLASRIGRTELVWCLRLL 356
            + D+ D +     + + V C  ++
Sbjct: 440 EMWDILDLMKEHRCKPDKVTCATMI 464



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 53/115 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G +E+    F+ M+   +KP+     S++  Y + G+  +    L  ++  +
Sbjct: 358 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSD 417

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++     ++ L+ AYG+     E+   L +MK   C PD +T   +I+ F   G+
Sbjct: 418 ITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCATMIKWFLIKGI 472


>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
 gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/439 (20%), Positives = 181/439 (41%), Gaps = 72/439 (16%)

Query: 48  CCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFW 107
           C   ++  L   S K  + ++ +     A+ A+ Q+ N K        +++  W K    
Sbjct: 36  CPDPTSTGLQRQSKKELSRILRT---EAAIKAIEQKANSK--------KYNNLWPK---- 80

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQE 164
           AV+  L ++ +  Q      +++ + K    E  ++   K++ ML +    EE    F+ 
Sbjct: 81  AVLEALDDAIKENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEV 140

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE---------------------- 202
           M    LKP++++Y +++  Y K G+ ++A   + EMK                       
Sbjct: 141 MLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLH 200

Query: 203 --------------MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PDHITY 247
                         + +   + TY+ +I  YGK KM++E++  L  M   G S PD  T+
Sbjct: 201 RFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTF 260

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME---KFYKR 304
           N +I  +   G + +ME  Y       +     T   ++ +Y   GM  KM    +F ++
Sbjct: 261 NSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFMEK 320

Query: 305 LLNSRTPLKEDL----VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
              S + +  ++      K  ++      FS++  LG      I    + +C  + +++ 
Sbjct: 321 RFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLG------IKPNTVTYCSLVSAYSK 374

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                 +DS++R++E++ V  +    N ++ AY +  D + +  L   +  R  KPD +T
Sbjct: 375 AGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPDSIT 434

Query: 421 IGILYDARRIGFDGTGALE 439
              +  A    ++  G +E
Sbjct: 435 FATMIQA----YNAQGMIE 449



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ME     PS+  +N  I  + K G       + ++MK + + P + TY  L+ AY K   
Sbjct: 318 MEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGH 377

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             ++D  L+ ++      D   +N +I  +  AG +++M   +  M  ++    S T   
Sbjct: 378 IMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPDSITFAT 437

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSR 309
           ++ AY   GM++  +     ++ +R
Sbjct: 438 MIQAYNAQGMIEAAQGMENMMIATR 462



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E     F +M+   +KP+   Y S++  YSK G   +    L +++  ++   +  +
Sbjct: 341 GDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFF 400

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I AYG+    +++      M+   C PD IT+  +IQ +   G+++  +G    M+ 
Sbjct: 401 NCVISAYGRAGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIA 460

Query: 273 KR 274
            R
Sbjct: 461 TR 462


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G +  A   F EM    LKP    Y + I G  K+G  ++A     EMK     P 
Sbjct: 427 FCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPD 486

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI    K   +D+ +  ++ M+L+G  PDH+TY  +I     +GLL++ E  + 
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFS 546

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            ML K +H    T   ++ +Y   G LD  +K++  +
Sbjct: 547 DMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEM 583



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 134/331 (40%), Gaps = 55/331 (16%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           V++ LK+ S   ++ +V+  M K   +  I  FN+  ++   C+EG +  AV     M  
Sbjct: 178 VLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNT--MMDSRCKEGEVGRAVEVLDVMRM 235

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           F   P+   YN +++G S  G+F+ A   + +M  + L   + TY+ LI+ + K +M++E
Sbjct: 236 FGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +   + M   G  P  +TYN ++      G                   R S     LD
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLG-------------------RVSDARRYLD 336

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD------DLA 341
             +N                      EDL+  L       Y +SRL +  +      +L 
Sbjct: 337 VMVN----------------------EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELR 374

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVR-EMESAKVRWNVTTANIILLAYLKMKDFK 400
           S+     +V    L+   C   +  I   ++ +M    +  +V T  I++  + +M +  
Sbjct: 375 SKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLP 434

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
             + L  E+ +R +KPD +     Y  R +G
Sbjct: 435 MAKELFDEMLSRGLKPDCIA----YTTRIVG 461



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+ +A   F +M    + PS+  Y  +IH Y+  G+ + A  + +EM++  +SP   TY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI    K  M D        M+  G SP+  TY +LI E +     +     YK ML 
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655

Query: 273 KRMHLRSSTMVAIL 286
           + +   S T  A++
Sbjct: 656 REIKPDSCTHSALM 669



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 74/372 (19%), Positives = 162/372 (43%), Gaps = 21/372 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +++      +I   C++ + EEA    +EM G    P++  YN+I++   ++G+ ++A  
Sbjct: 274 KVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARR 333

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +L+ M   +L P   +Y+ LI  Y +   + E  +    ++     P  +TYN LI    
Sbjct: 334 YLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGC 393

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G L   +G    M+   +     T   ++  +   G L   ++ +  +L SR  LK D
Sbjct: 394 RTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML-SRG-LKPD 451

Query: 316 LV----RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSV 370
            +    R + E+ + N   S+   + +++ +     +L+    L++  C L +    + +
Sbjct: 452 CIAYTTRIVGELKLGNP--SKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANEL 509

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           V++M    +  +  T   I+ A+L     +    + S++  + + P +VT  +L  +  +
Sbjct: 510 VQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAV 569

Query: 431 GFDGTGALEMWKRIGFLFKTVEINTDPLVLA----VYG--KGHFLRYCEEVYSSLEPYSR 484
                G L+  K+  +  +  +    P V+     +YG  K + +     +++ +E    
Sbjct: 570 ----RGRLDFAKK--YFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGV 623

Query: 485 EKKRWTYQNLID 496
              ++TY  LI+
Sbjct: 624 SPNKYTYTILIN 635



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 66/163 (40%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G  ++A    Q+M    + P    Y SIIH +   G   +A    ++M +  
Sbjct: 493 LINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKG 552

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI +Y      D        M+  G SP+ ITYN LI       ++    
Sbjct: 553 IHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAY 612

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             +  M +K +     T   +++   N        K YK +L+
Sbjct: 613 NLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 170/439 (38%), Gaps = 79/439 (17%)

Query: 35  FFAKT--LIRKP-ISCCCLSSAPSLD------YHS--TKHTTLL-VESYHEHQALNAL-- 80
           FF+KT  L  KP       S+ P +D      +HS  T+   LL V +  +H+ L AL  
Sbjct: 12  FFSKTITLFLKPHFRFYPFSTNPQIDNSVNPHFHSAVTQPEFLLRVLNSVKHRPLTALRF 71

Query: 81  ---------IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN 131
                      R        L IL  +G + K  +W     ++ +   +    V D+   
Sbjct: 72  FRWVEKQPNFHRSETAFVAILDILAKNG-FMKPAYWV----MEKAIEVKVDGGVLDVLVG 126

Query: 132 IEKSRINEFNSQKI---IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           I   R +E + + +   I +  ++ ++E+ +  F +M    L P +   N ++       
Sbjct: 127 IGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKS 186

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
             NE     + M +  + P   T++ ++ +  K          L +M++ GC P+ ++YN
Sbjct: 187 MVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYN 246

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +L+   +  G   R +   + M    + + + T                    Y  L+  
Sbjct: 247 VLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHT--------------------YNPLIRG 286

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-----S 363
                          + K  MF   +DL  ++  R     +V    ++   C L     +
Sbjct: 287 ---------------FCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDA 331

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
            R +D +V E     +  ++ + N ++  Y ++ +F    +L SEL ++++ P +VT   
Sbjct: 332 RRYLDVMVNE----DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNT 387

Query: 424 LYDARRIGFDGTGALEMWK 442
           L D    G   TG L++ K
Sbjct: 388 LID----GGCRTGNLDIAK 402



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A + F EM+   + P++  YN++I+G  K    + A     EM+   +SP   TY
Sbjct: 571 GRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTY 630

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             LI      + + +     K M      PD  T++ L++  +
Sbjct: 631 TILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLS 673



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC+E +M+ A   F EME   + P+   Y  +I+  S +  + +AL   
Sbjct: 591 NVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLY 650

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGK-YKM 224
            +M +  + P S T+  L++   K YK+
Sbjct: 651 KDMLDREIKPDSCTHSALMKHLSKDYKL 678


>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 697

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 126/261 (48%), Gaps = 7/261 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+   +E A   F EM+   +KP    YN ++H YS+  +       L EM+++ 
Sbjct: 361 LMDAFCKSNHIEAAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVG 420

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEI---DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           L P + +Y  LI AYGK K   ++   D  LKM K+ G  P   +Y  LI  ++ +GL +
Sbjct: 421 LKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKV-GVKPTSQSYTALIHAYSVSGLHE 479

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           +    +++M  + +     T   +L+A+ + G    + + +K +++ +          L 
Sbjct: 480 KAYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATFNILV 539

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL--SHACLLSHRGIDSVVREMESAKV 379
           + + K  +F    ++  +   ++G    V    +L  ++A    H  +  +++EM   K+
Sbjct: 540 DGFAKQGLFMEAREVISEFG-KVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVLKL 598

Query: 380 RWNVTTANIILLAYLKMKDFK 400
           + +  T + ++ A+++++DF+
Sbjct: 599 KPDSVTYSTMIFAFVRVRDFR 619



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 70/156 (44%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL E+A  AF+ M+   +KPS+E Y ++++ +   G     +     M    +     T+
Sbjct: 476 GLHEKAYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATF 535

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  + K  ++ E    +      G  P  +TYN+LI  +A  G   ++    K M  
Sbjct: 536 NILVDGFAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAV 595

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            ++   S T   ++ A++      +   ++K+++ S
Sbjct: 596 LKLKPDSVTYSTMIFAFVRVRDFRRAFFYHKQMIKS 631



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 150/355 (42%), Gaps = 27/355 (7%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG-LMEEAVRAFQEME 166
           A I  L +S RS    +V++  +  E    +      ++ ++ E G   ++A + F++M 
Sbjct: 254 ATISGLLSSGRSEDAWKVYESMET-ENIHPDHMTCSIMVTVMRELGHSAKDAWQFFEKMN 312

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              ++ S E+  ++I+ +   G   +AL+  +EM++  +S  +  Y+ L+ A+ K    +
Sbjct: 313 RKGVRWSEEVLGALINSFCVEGLRRQALIIQSEMEKKGVSSSAIVYNTLMDAFCKSNHIE 372

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +     MK  G  P   TYN+L+  ++     K +E   + M    +   +++   ++
Sbjct: 373 AAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVGLKPNATSYTCLI 432

Query: 287 DAY---MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IKNYMFSRLDDLG--- 337
            AY    N   +   + F K        +K+  V+  ++ Y   I  Y  S L +     
Sbjct: 433 IAYGKQKNMSDMAAADAFLK--------MKKVGVKPTSQSYTALIHAYSVSGLHEKAYAA 484

Query: 338 -DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE----MESAKVRWNVTTANIILLA 392
            +++ +   +  +     LL+      H G    + E    M S KV     T NI++  
Sbjct: 485 FENMQNEGIKPSIETYTTLLN---AFRHAGDAQTLMEIWKLMISEKVEGTGATFNILVDG 541

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
           + K   F   R ++SE     +KP +VT  +L +A   G   +   ++ K +  L
Sbjct: 542 FAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVL 596



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++    ++GL  EA     E     LKP++  YN +I+ Y++ G+ ++    L EM  + 
Sbjct: 538 LVDGFAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVLK 597

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           L P S TY  +I A+ + + +       K M   G   D  +Y  L
Sbjct: 598 LKPDSVTYSTMIFAFVRVRDFRRAFFYHKQMIKSGQMMDGGSYQTL 643


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 147/374 (39%), Gaps = 40/374 (10%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I+  + N +    II +LC+ G   EA +  +EM    + P   +Y ++IHG+ K+G   
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            A  + +EM    +SP   TY  LIQ +G+     E       M   G  PD +TY  LI
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             +  AG +      +  M+   M     T  A++D     G LD   +    +      
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
           L          V I N M + +   G+                 +  A  L        +
Sbjct: 501 LN---------VCIYNSMVNGICKAGN-----------------IEQAIKL--------M 526

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           +EME A +  +  T   ++ AY ++ D      LL E+  R ++P +VT  +L +    G
Sbjct: 527 KEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN----G 582

Query: 432 FDGTGALEMWKR-IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
           F   G LE   R +G++ +   I  D +      K H +R      + +    R +    
Sbjct: 583 FCMLGMLEDGDRLLGWMLEK-GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAP 641

Query: 491 YQNLIDLVIKHNGK 504
             N  +++IK + K
Sbjct: 642 DSNTYNILIKGHCK 655



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 122/286 (42%), Gaps = 5/286 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC  G ++EA R   +M+  +  P +  Y+++I GY  +G+  +AL  +++M+   
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ +I    K     E +  L+ M      PD++ Y  LI  F   G ++   
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTAN 383

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  ML+K++     T   ++  +   G + + +  +  +++      E     L +VY
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRW 381
            K         L +++        +V    L+   C   H  +D+   ++ EM    ++ 
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC--KHGELDTANELLDEMRKKGLQL 501

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           NV   N ++    K  + +    L+ E+    + PD +T   + DA
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 9/279 (3%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G + E    F EM    LKP    Y ++I  Y K G+   A    NEM +M ++P   
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  LI    K+   D  +  L  M+  G   +   YN ++     AG +++     K M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-M 329
               +   + T   ++DAY   G +DK  K  + +L+    L+  +V     V +  + M
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDR--GLQPTVVT--FNVLMNGFCM 585

Query: 330 FSRLDD----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
              L+D    LG  L   I    + +   +  H    S      + + M +  V  +  T
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            NI++  + K ++ K    L  E+  +   P + +   L
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P++E Y  +I    K G   +A   L  M E  
Sbjct: 156 LINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKG 215

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+AYG+  +Y+E  +    M   G  P   TYN LIQ FA  GL K  E
Sbjct: 216 VVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESE 275

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     T   +++A+   G  ++  K Y  +  +R    E  +  +  VY
Sbjct: 276 AILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVY 335

Query: 325 -IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
                +    +  G+  A  I  + + +C+ L  +A
Sbjct: 336 CFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYA 371



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+     +EME     P +  YN ++  +++ G   EA+    +M+     P + TY  
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  YG++  YD++      MK+    P+  TYN+LI  F   G  K +   +  M+ + 
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEK 300
           +     T   ++ A    G+ +  +K
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKK 206



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++  +  YN+++   ++ G  +EA +    M E  + P   TY  L++ +GK    +++
Sbjct: 5   GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 64

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              LK M+  G  PD  +YN+L++  A +G +K   G ++ M        ++T   +L+ 
Sbjct: 65  SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 124

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           Y   G  D +   +  +  S T         L  V+ +   F  +  L  D+
Sbjct: 125 YGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDM 176



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL +EA   F+ M    + P +  Y+ ++  + K+ +  +    L EM+     P   +Y
Sbjct: 24  GLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSY 83

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + L++A+ +     E     + M+  GC P+  TY++L+
Sbjct: 84  NVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 122



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  +NS  +I M  + GL +E+     +M    +  + + +N +I  + + G+F EA
Sbjct: 252 KPTVETYNS--LIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEA 309

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +    EM++    P   T + ++  Y    + +E +     +K  G  P  + Y +++  
Sbjct: 310 IKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAV 369

Query: 254 FACAGLLKRMEGTYKSMLTKRM 275
           +A A            M T R+
Sbjct: 370 YAKADRWDDAHQLLDEMFTNRV 391


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 147/374 (39%), Gaps = 40/374 (10%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I+  + N +    II +LC+ G   EA +  +EM    + P   +Y ++IHG+ K+G   
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            A  + +EM    +SP   TY  LIQ +G+     E       M   G  PD +TY  LI
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             +  AG +      +  M+   M     T  A++D     G LD   +    +      
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
           L          V I N M + +   G+                 +  A  L        +
Sbjct: 501 LN---------VCIYNSMVNGICKAGN-----------------IEQAIKL--------M 526

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           +EME A +  +  T   ++ AY ++ D      LL E+  R ++P +VT  +L +    G
Sbjct: 527 KEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN----G 582

Query: 432 FDGTGALEMWKR-IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
           F   G LE   R +G++ +   I  D +      K H +R      + +    R +    
Sbjct: 583 FCMLGMLEDGDRLLGWMLEK-GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAP 641

Query: 491 YQNLIDLVIKHNGK 504
             N  +++IK + K
Sbjct: 642 DSNTYNILIKGHCK 655



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 122/286 (42%), Gaps = 5/286 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC  G ++EA R   +M+  +  P +  Y+++I GY  +G+  +AL  +++M+   
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ +I    K     E +  L+ M      PD++ Y  LI  F   G ++   
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTAN 383

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  ML+K++     T   ++  +   G + + +  +  +++      E     L +VY
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRW 381
            K         L +++        +V    L+   C   H  +D+   ++ EM    ++ 
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC--KHGELDTANELLDEMRKKGLQL 501

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           NV   N ++    K  + +    L+ E+    + PD +T   + DA
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 9/279 (3%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G + E    F EM    LKP    Y ++I  Y K G+   A    NEM +M ++P   
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  LI    K+   D  +  L  M+  G   +   YN ++     AG +++     K M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-M 329
               +   + T   ++DAY   G +DK  K  + +L+    L+  +V     V +  + M
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDR--GLQPTVVT--FNVLMNGFCM 585

Query: 330 FSRLDD----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
              L+D    LG  L   I    + +   +  H    S      + + M +  V  +  T
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            NI++  + K ++ K    L  E+  +   P + +   L
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 35/289 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     +I   C+EG   EA   F+ M G ++ P +  Y+++IHG  + GK   A+  L
Sbjct: 585 NDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELL 644

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +E  E  L P   TY+ +I  + K     +     + M   G SP+ ITYN LI     A
Sbjct: 645 SEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKA 704

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G ++R    +  +  K +   + T   I+D Y   G L K  + +  +            
Sbjct: 705 GEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM------------ 752

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             L  V   ++++S L D       + G TE    L L            +SV +   S 
Sbjct: 753 -TLKGVPPDSFVYSALIDG----CRKEGNTEKALSLFL------------ESVQKGFAS- 794

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 ++ N ++  + K         LL ++  +HVKPD VT  IL D
Sbjct: 795 -----TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILID 838



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 23/329 (6%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +E  R   EME     PSL  YN +I G  + G+ +EA      M +  L     TY
Sbjct: 250 GNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTY 309

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  +GK K   E  + L+ M   G  P H+ Y  LI  F   G         + ML 
Sbjct: 310 SILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLA 369

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + + L   T  A++     FG ++K +     ++             + E Y+K    SR
Sbjct: 370 RGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSR 429

Query: 333 LDDLGDDLASRIGRTELV----WCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTT 385
           +     DL S + ++ LV     C  +++  C   H  I+   R  E   S  V+ N   
Sbjct: 430 V----KDLLSEMKKSNLVPTAYTCGMIINGLC--RHGSIEDASRVFEIMVSLGVKPNAVI 483

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
              ++  +++   F+    +L  +  + V+PD+    + Y++  IG   +  +E  K   
Sbjct: 484 YTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDV----LCYNSVIIGLCKSRKMEEAKD-- 537

Query: 446 FLFKTVEINTDPLVLAVYGKGHFLR-YCE 473
           +L + +E    P    VY  G  +  YC+
Sbjct: 538 YLVEMIERGLKP---NVYTYGALIHGYCK 563



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 7/319 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           +LK  + SR    V D+   ++KS +    +    II  LC  G +E+A R F+ M    
Sbjct: 421 YLKEQNTSR----VKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLG 476

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +KP+  IY ++I G+ + G+F EA+  L  M +  + P    Y+ +I    K +  +E  
Sbjct: 477 VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  M   G  P+  TY  LI  +  +G ++  +  +K ML   +        A++D Y
Sbjct: 537 DYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGY 596

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
              G   +    ++ +L             L    ++N       +L  +   +    ++
Sbjct: 597 CKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDV 656

Query: 350 VWCLRLLSHACLLSHRGIDSVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                ++S  C     G    + E M    +  N+ T N ++    K  + +  R L   
Sbjct: 657 FTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDG 716

Query: 409 LPTRHVKPDIVTIGILYDA 427
           +P + +  + VT   + D 
Sbjct: 717 IPGKGLAHNAVTYATIIDG 735



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 19/311 (6%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N F    ++  +C+ G ME+A     EM    +KP  + YN++I GY K    +    
Sbjct: 373 KLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKD 432

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L+EMK+ NL P + T   +I    ++   ++     ++M   G  P+ + Y  LI+   
Sbjct: 433 LLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHV 492

Query: 256 CAGLLKRMEGTYKSMLTKRMH----LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             G  +      K M  K +       +S ++ +  +       D + +  +R L     
Sbjct: 493 QEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVY 552

Query: 312 LKEDLVR---KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL-LSHRGI 367
               L+    K  E+ + +  F  +      L   I   ++V C  L+   C   S    
Sbjct: 553 TYGALIHGYCKSGEMQVADRYFKEM------LGCGIAPNDVV-CTALIDGYCKEGSTTEA 605

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            S+ R M    V  +V T + ++   L+    +    LLSE   + + PD+ T    Y++
Sbjct: 606 TSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFT----YNS 661

Query: 428 RRIGFDGTGAL 438
              GF   G +
Sbjct: 662 IISGFCKQGGI 672



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 134/328 (40%), Gaps = 25/328 (7%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++GL +EAV  F   +       L   N ++    K  K      F N M E N+     
Sbjct: 178 KKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVY 237

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  LI A+ +     E    L  M+  GCSP  +TYN++I      GL +  E      
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVI-----GGLCRAGEVDEAFE 292

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM- 329
           L K M  +      + D +    ++D   K  KR   ++  L+E   + L   ++     
Sbjct: 293 LKKLMDKKG----LVADVFTYSILIDGFGK-QKRCTEAKLMLEEMFSKGLKPGHVAYTAL 347

Query: 330 ---FSRLDDLG------DDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKV 379
              F R  D G      +++ +R  +  L     L+   C        D+++ EM    +
Sbjct: 348 IDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGI 407

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           + +  T N ++  YLK ++   ++ LLSE+   ++ P   T G++ +    G    G++E
Sbjct: 408 KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIIN----GLCRHGSIE 463

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGH 467
              R+  +  ++ +  + ++     KGH
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGH 491



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 151 EEGLMEEAVRAFQE--MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +EG  E+A+  F E   +GFA   SL   N+++ G+ K GK  EA   L +M + ++ P 
Sbjct: 773 KEGNTEKALSLFLESVQKGFASTSSL---NALMDGFCKSGKVIEANQLLEDMVDKHVKPD 829

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI  + K     E +     M+     P+ +TY  L+  +  AG    M   + 
Sbjct: 830 HVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFD 889

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFG 293
            M+ K +     T   ++DA++  G
Sbjct: 890 EMIAKDIEPDGVTWSVMIDAHLKEG 914



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G + EA +  ++M    +KP    Y  +I  + K G   EA  F  +M++ NL P 
Sbjct: 805 FCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPN 864

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + TY  L+  Y       E+      M      PD +T++++I
Sbjct: 865 ALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 26/327 (7%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           +  +I  L   G +  A R F+         ++  ++++I  Y + G   EA+   N MK
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295

Query: 202 EMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           E  L P   TY+ +I A GK  M + ++      M+ +G  PD IT+N L+   +  GL 
Sbjct: 296 EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLW 355

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
           +     +  M  +R+     +   +LDA    G +D   +   ++     P+K    R +
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM-----PVK----RIM 406

Query: 321 AEVYIKNYMFSRLDDLG--DDLASRIGRTE-LVWCLRLLSHACLLS--------HRGIDS 369
             V   + +       G  D+  +  G    L   L  +S+  LLS           +D 
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALD- 465

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           ++REM S  ++ +V T N +L  Y K   +  ++ + +E+   HV P+++T   L D   
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525

Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTD 456
            G     A+E+++     FK+  +  D
Sbjct: 526 KGGLYKEAMEIFRE----FKSAGLRAD 548



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 28/315 (8%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+   F++   +   RI  N  +   +I    + G  +EA+  F EM    +      YN
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++  Y+K+G+  EAL  L EM  + +     TY+ L+  YGK   YDE+      MK +
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLD 296
              P+ +TY+ LI  ++  GL K     ++    K   LR+  ++  A++DA    G++ 
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF--KSAGLRADVVLYSALIDALCKNGLVG 566

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA--------SRIGRTE 348
                   +              + + + ++    R  D  +  +        S +  TE
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETE 626

Query: 349 LVWCLRLLSHACLLSHRG--------------IDSVVREMESAKVRWNVTTANIILLAYL 394
               ++L       S+                I  V R+M   +++ NV T + IL A  
Sbjct: 627 GNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686

Query: 395 KMKDFKHLRVLLSEL 409
           +   F+   +LL EL
Sbjct: 687 RCNSFEDASMLLEEL 701



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           ++   W   R L +   +R+I Q             + F+   ++  +C+ G M+ A   
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQ-------------DVFSYNTLLDAICKGGQMDLAFEI 396

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             +M    + P++  Y+++I G++K G+F+EAL    EM+ + ++    +Y+ L+  Y K
Sbjct: 397 LAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTK 456

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS- 280
               +E    L+ M   G   D +TYN L+  +   G    ++  +  M  KR H+  + 
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM--KREHVLPNL 514

Query: 281 -TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLG 337
            T   ++D Y   G+  +  + ++   ++   L+ D+V    L +   KN +      L 
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSA--GLRADVVLYSALIDALCKNGLVGSAVSLI 572

Query: 338 DDL 340
           D++
Sbjct: 573 DEM 575



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 6/277 (2%)

Query: 120 RQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +Q+ + FD M +N ++  RI  FNS  ++ +    GL E A   F EM    ++  +  Y
Sbjct: 321 KQVAKFFDEMQRNGVQPDRIT-FNS--LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSY 377

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++    K G+ + A   L +M    + P   +Y  +I  + K   +DE       M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G + D ++YN L+  +   G  +      + M +  +     T  A+L  Y   G  D+
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           ++K +  +              L + Y K  ++    ++  +  S   R ++V    L+ 
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALID 557

Query: 358 HACLLSHRGID-SVVREMESAKVRWNVTTANIILLAY 393
             C     G   S++ EM    +  NV T N I+ A+
Sbjct: 558 ALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 152/366 (41%), Gaps = 16/366 (4%)

Query: 128 MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +++ I +S +  N +    ++  LC++G ME+      E++   + P +  YN++I  YS
Sbjct: 212 IYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYS 271

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             G   EA   ++ M     SP   TY+ +I    K+  Y+        M   G SPD  
Sbjct: 272 SQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 331

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TY  L+ E    G     E  +  M ++ +        +++  +   G LDK   ++  +
Sbjct: 332 TYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 391

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
             +       +   L + Y +  M S   +L +++  +    ++V    +L   C     
Sbjct: 392 KEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 451

Query: 366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           G  D +  EM    +  +  T  I++  + K+ + ++   L  ++  + +K D+VT   L
Sbjct: 452 GEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTL 511

Query: 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDP-----LVLAVYGKGH----FLRYCEEV 475
            D    GF   G ++  K I     + EI   P     LV A+  KGH    F  + E +
Sbjct: 512 LD----GFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMI 567

Query: 476 YSSLEP 481
             S++P
Sbjct: 568 SKSIKP 573



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC +G + EA R + EM   ++KP++ I NS+I GY + G  ++  +FL +M    
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM--KLDGCSPDHITYNLLIQEFACAGLLKR 262
             P   +Y+ LI  + K +   +    +K M  K  G  PD  TYN ++  F     +K 
Sbjct: 606 FVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKE 665

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            E   + M+ + ++   ST  ++++ +++   L +  +F+  +L
Sbjct: 666 AEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEML 709



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 119/279 (42%), Gaps = 7/279 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G   E    F +M    + P L  ++S++  +++ G  ++AL++ N +KE  L P +
Sbjct: 341 CKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 400

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  LIQ Y +  M  E       M   GC+ D +TYN ++       +L   +  +  
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M  + +   S T+  ++D +   G L    + +K++   R  L       L + + K   
Sbjct: 461 MTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGD 520

Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTT 385
                ++  D+ S+ I  T + + + L++  C   H  +    R   EM S  ++  V  
Sbjct: 521 IDTAKEIWADMVSKEILPTPISFSI-LVNALCSKGH--LSEAFRVWDEMISKSIKPTVMI 577

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            N ++  Y +  +     + L ++ +    PD ++   L
Sbjct: 578 CNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTL 616



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 87/467 (18%), Positives = 173/467 (37%), Gaps = 70/467 (14%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNALIQ------RLNKKVSCPLQILQHDGDWTKDHFWA 108
             ++ + KHT+L         +L+A+I       RL+   SC L++++  G    +   +
Sbjct: 93  GFNFPNFKHTSL---------SLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNS 143

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++    N   +     VFD+                +I    +   + EA  AF  +   
Sbjct: 144 LVSTYSNCGSN---DSVFDL----------------LIRTFVQARKLREAYEAFTLLRSK 184

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
               S++  N++I    +IG    A     E+    +     T + ++ A  K    +++
Sbjct: 185 GYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKV 244

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  ++  G  PD +TYN LI  ++  GL++       +M +K       T   +++ 
Sbjct: 245 GTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVING 304

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G  ++ ++ +  +L S         R L     K       +++  D+ SR    +
Sbjct: 305 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPD 364

Query: 349 LVWCLRLLS-------------------HACLLSHRGIDSVV-----------------R 372
           LV    ++S                    A L+    I +++                  
Sbjct: 365 LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRN 424

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM       +V T N IL    K K       L +E+  R + PD  T+ IL D      
Sbjct: 425 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLG 484

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           +   A+E++K++      +++ T   +L  +GK   +   +E+++ +
Sbjct: 485 NLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM 531


>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 140/321 (43%), Gaps = 42/321 (13%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE- 202
           K++ ML +    EEA   F+ M    LKP++++Y +++  Y + G  ++A   + +MK  
Sbjct: 129 KLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSV 188

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           ++  P   TY  LI+   K++ +D I+  L  M   G   + +TYN +I  +  A + ++
Sbjct: 189 VDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQ 248

Query: 263 MEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
           M+     M+     H    T+ + + AY N G +DKMEK+Y         +K D+     
Sbjct: 249 MDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEF--QLMGIKPDITTFNT 306

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRI------------------GRTE------------- 348
           + + Y K  M+ ++  + D +  R                   G  E             
Sbjct: 307 MIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLG 366

Query: 349 -----LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
                + +C  + +++ +     +DS++R +E++ V  +    N I+ AY +  + K + 
Sbjct: 367 VKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMG 426

Query: 404 VLLSELPTRHVKPDIVTIGIL 424
            L   +  R  +PD +T   +
Sbjct: 427 ELFLAMRERKCEPDNITFACM 447



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 2/184 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  FN+  +I    + G+ E+       ME     P++  YN++I  + K G+  + 
Sbjct: 298 KPDITTFNT--MIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKM 355

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
                +MK + + P S TY  L+ AY K    D++D  ++ ++      D   +N +I  
Sbjct: 356 DQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISA 415

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +  AG LK+M   + +M  ++    + T   ++ +Y   GM + ++     ++++++ L 
Sbjct: 416 YGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLG 475

Query: 314 EDLV 317
             L+
Sbjct: 476 TKLI 479



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 1/176 (0%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +N   S  + F     +G     G +++  + + E +   +KP +  +N++I  Y K
Sbjct: 255 DMIEN-GNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGK 313

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G + +    ++ M++   +P   TY+ +I+ +GK    +++D     MK  G  P+ IT
Sbjct: 314 AGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSIT 373

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           Y  L+  ++  G + +++   + +    + L +     I+ AY   G L KM + +
Sbjct: 374 YCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELF 429


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 123/284 (43%), Gaps = 4/284 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G +  A+  F+ ME    +P+   Y+S+I+G  +  K ++A+  + +M+E  
Sbjct: 375 IIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 434

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LIQ   K   +D      +MM+ +G +PD   YN+L      +G   R E
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSG---RAE 491

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y  ++ K + L   T  +++D +   G  D      ++++N            L +  
Sbjct: 492 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQAL 551

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNV 383
            K    +    + D +     +  +V    ++S       H    S+  EM S+  + + 
Sbjct: 552 CKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSA 611

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           TT  + + +Y K+   +    L+ E+    V PD+VT  +  + 
Sbjct: 612 TTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFING 655



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 13/366 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NE++   +I  LCE   + EA+     M       +L  Y  +I G  K G+ + A  
Sbjct: 157 RRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARR 216

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L EM    + P   TY+ +I  Y K  +M D + +   +M+ +GC+PD  TYN+LI   
Sbjct: 217 VLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGI-KALMERNGCNPDDWTYNILIYGL 275

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            C       E      + +       T   I++ Y     +D   +    +L+S   L  
Sbjct: 276 -CGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDL 334

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVRE 373
                L  V IK   F    +   ++ +      +V    ++   C +   G    V R 
Sbjct: 335 QAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRL 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIG 431
           ME    R N  T + ++   ++ +       L++++    + P ++T   L     ++  
Sbjct: 395 MEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 454

Query: 432 FDGTGAL-EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
           FD    L EM ++ G        N     L   G+       EE YS L        + T
Sbjct: 455 FDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRA------EEAYSFLVRKGVVLTKVT 508

Query: 491 YQNLID 496
           Y +L+D
Sbjct: 509 YTSLVD 514



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + + +    ++  LC++  + EA+    +M    +K ++  Y  II    K GK + 
Sbjct: 535 EGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDH 594

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A    NEM      P + TY   I +Y K    +E +  +  M+ DG +PD +TYN+ I 
Sbjct: 595 AKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFIN 654

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
                G + R   T K M+         T   +L  ++   ++D
Sbjct: 655 GCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVD 698



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 35/217 (16%)

Query: 101 WTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRI--------------NEFNSQKI 145
           WT   +W +++ FLK S           MW  IE   +                     I
Sbjct: 682 WT---YWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSI 738

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+   +EEA   F  M G  + P+ EIY  +I     I  F +A+ F+ +M E   
Sbjct: 739 IAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF 798

Query: 206 SPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFA-------CA 257
            P  ++Y  LI        YD+   +   ++ ++  + + + + +L            C+
Sbjct: 799 QPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCS 858

Query: 258 GLLKRMEG--------TYKSMLTKRMHLRSSTMVAIL 286
            LL  ME         TY SM+T  +H  S ++V+ L
Sbjct: 859 QLLSAMENRHCQIDSETY-SMVTDNIHEASGSVVSEL 894


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 94  ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
           +LQ     T + F A+I     S+  ++  +VF+  +  +    +++    +I   C+ G
Sbjct: 146 LLQDKLRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAG 205

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L ++A + F EM    ++P++  YN++I GY K G F E    L+ M+   ++P + T++
Sbjct: 206 LYDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWN 265

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI+ +G +    E++   + +   G   D +T N LI  +  AGL  +ME     M   
Sbjct: 266 TLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRY 325

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFS 331
              + + T   I++ Y     +++M+  +KR+      LK + +    +   Y K+  + 
Sbjct: 326 SYPMTTVTYNIIIEIYGKARKIEQMDTAFKRM--KAQGLKPNCITFSSILSAYGKHGEWH 383

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
           +++ +   +         V+   + +H   L    ++ +  EM+   V  +  T   ++ 
Sbjct: 384 KIEKIMRQVRHYNAADTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIE 443

Query: 392 AYLKMKDFKHLRVLLSE 408
           AY +++  +  R L  E
Sbjct: 444 AYGRVRKLQKARELQEE 460



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 124/301 (41%), Gaps = 50/301 (16%)

Query: 170 LKPSLEIYNSIIHGYSK------------------------------------IGKFNEA 193
           L+P+LEI+ ++I  ++K                                     G +++A
Sbjct: 151 LRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQA 210

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               NEM    + P   TY+ LI  YGK  ++ EI+  L +M+ +G +PD IT+N LI+ 
Sbjct: 211 KKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRV 270

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           F     +  ME  Y+ +L + +     T+ +++  Y   G+  KME     +     P+ 
Sbjct: 271 FGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMT 330

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG------- 366
                 + E+Y K     ++D     + ++  +   +      + + +LS  G       
Sbjct: 331 TVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCI------TFSSILSAYGKHGEWHK 384

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           I+ ++R++       +    N  + A+ +  DF+ +  L  E+    V PD +T   L +
Sbjct: 385 IEKIMRQVRHYNAA-DTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIE 443

Query: 427 A 427
           A
Sbjct: 444 A 444


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 145/349 (41%), Gaps = 12/349 (3%)

Query: 128 MWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +++ I +S   IN +    ++  LC++G ME+      +++   + P +  YN++I  YS
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             G   EA   +N M     SP   TY+ +I    K+  Y+        M   G SPD  
Sbjct: 282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TY  L+ E    G +   E  +  M ++ +        +++  +   G LDK   ++  +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
             +       +   L + Y +  M S   +L +++  +    ++V    +L   C     
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           G  D +  EM    +  +  T  I++  + K+ + ++   L  ++  + ++ D+VT   L
Sbjct: 462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521

Query: 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDP-----LVLAVYGKGHF 468
            D    GF   G ++  K I     + EI   P     LV A+  KGH 
Sbjct: 522 LD----GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 118/277 (42%), Gaps = 3/277 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G + E  + F +M    + P L  ++S++  +++ G  ++AL++ N +KE  L P +
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  LIQ Y +  M          M   GC+ D +TYN ++       +L   +  +  
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M  + +   S T+  ++D +   G L    + ++++   R  L       L + + K   
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530

Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTAN 387
                ++  D+ S+ I  T + + + L++  C   H      V  EM S  ++  V   N
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSI-LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++  Y +  +       L ++ +    PD ++   L
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 185/442 (41%), Gaps = 45/442 (10%)

Query: 72  HEHQALNALIQ------RLNKKVSCPLQILQHDG----------DWTKDH-------FWA 108
           H   +L+A+I       RL+   SC L++++  G          D T  +       F  
Sbjct: 111 HTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDL 170

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +IR    + + R+  + F + ++ +   ++      +IG L   G +E A   +QE+   
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRS-KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +  ++   N +++   K GK  +   FL++++E  + P   TY+ LI AY    + +E 
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              +  M   G SP   TYN +I      G  +R +  +  ML   +   S+T  ++L  
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-------A 341
               G + + EK +   + SR     D+V  L        +F+R  +L   L        
Sbjct: 350 ACKKGDVVETEKVFSD-MRSR-----DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVV----REMESAKVRWNVTTANIILLAYLKMK 397
           + +    +++ + L+   C    +G+ SV      EM       +V T N IL    K K
Sbjct: 404 AGLIPDNVIYTI-LIQGYC---RKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
                  L +E+  R + PD  T+ IL D      +   A+E+++++      +++ T  
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519

Query: 458 LVLAVYGKGHFLRYCEEVYSSL 479
            +L  +GK   +   +E+++ +
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADM 541



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 2/149 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC +G + EA R + EM    +KP++ I NS+I GY + G  ++   FL +M    
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHITYNLLIQEFACAGLLKR 262
             P   +Y+ LI  + + +   +    +K M+ +  G  PD  TYN ++  F     +K 
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            E   + M+ + ++   ST   +++ +++
Sbjct: 676 AEVVLRKMIERGVNPDRSTYTCMINGFVS 704


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 1/273 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +   R F++M G   KP++  YN +I    K G    A     EMK   L P + TY
Sbjct: 112 GKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTY 171

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  YGK    D+     + MK   C PD ITYN LI  F  +G L +    Y+ M  
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQ 231

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +     +   ++DA+    M+ +  KFY  +        E     L +   K    S 
Sbjct: 232 SGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSD 291

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILL 391
              L +++        +V    L+   C     +  + +  +M +A V  N+ + N ++ 
Sbjct: 292 AFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIH 351

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++K K+      LL+EL  R ++PD++  G  
Sbjct: 352 GFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M+EA + F +M    + P+L  YN++IHG+ K    + AL  LNE+K   
Sbjct: 314 LIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 373

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y   I      +  +   + +  M+ +G   + + Y  L+  +  +G     E
Sbjct: 374 IQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG--NPTE 431

Query: 265 GTY--KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G +  + M      +   T   ++D      ++ K   ++ R+ N
Sbjct: 432 GLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSN 476



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+E  ++ A   F++M    L P    Y S++ G  K G   EAL   ++M E+ 
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIG 549

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +      Y  L+  + +         C ++ K      + I   +L  E  C G+LK+
Sbjct: 550 MKLDLLAYTSLVWGFSQ---------CNQLQKARSFLEEMIGEEILPDEVLCIGVLKK 598


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 12/307 (3%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E    AF  M    LKP++  YN+++  Y+  G  NEAL   NE+K+    P   +Y
Sbjct: 341 GHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSY 400

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+ AYG+ +   +     KM+K +   P+ ++YN LI  +   GLL+      + M  
Sbjct: 401 TSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQ 460

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
            ++H    ++  +L A    G   K++            L           YI    + +
Sbjct: 461 DKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDK 520

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTANIILL 391
             DL + +  +  +++ V    L+S  C +S  G   S + EM   K+  +    + I+ 
Sbjct: 521 AIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIIC 580

Query: 392 AYLK----MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
           AY K    +          + + +    PD+VT   + DA         A E W+++  L
Sbjct: 581 AYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAY-------NAAEKWEKLYAL 633

Query: 448 FKTVEIN 454
           F+ +E N
Sbjct: 634 FEEMEEN 640



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 154/361 (42%), Gaps = 41/361 (11%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLME 156
           G + + +F  +IR L           VF   KN +   +R + +N   +I +       +
Sbjct: 110 GRFARKNFPFLIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYN--MMIRLHARHNRTD 167

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A   F EM+    KP  E YN++I+ + + G++  A+  +++M    + P   TY+ LI
Sbjct: 168 QARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 227

Query: 217 QAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
            A G    + E +++C KM   +G  PD +T+N+++  F       +    ++  L K  
Sbjct: 228 NACGSSGNWKEALNVCKKMTD-NGVGPDLVTHNIMLTAFKSGTQYSKALSYFE--LIKGT 284

Query: 276 HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
           H+R  T     I+   +     DK    +  +   ++    D+V   + +++ +      
Sbjct: 285 HIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYS------ 338

Query: 334 DDLGDDLASRIGRTELVWCLRL--------LSHACLL---SHRGIDS----VVREMESAK 378
                 +   I   E  + + L        +S+  LL   + RG+++    V  E++   
Sbjct: 339 ------VCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNG 392

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
            R +V +   +L AY + +  +  R +   +   ++KP+IV+   L DA    +   G L
Sbjct: 393 FRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDA----YGSNGLL 448

Query: 439 E 439
           E
Sbjct: 449 E 449



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N       IG     G  ++A+  +  M    +K     Y  +I G  K+ KF EAL 
Sbjct: 499 KLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALS 558

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYK----MYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           F+ EM  + L    + Y  +I AY K         E +    +MK  GCSPD +TY  ++
Sbjct: 559 FMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAML 618

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             +  A   +++   ++ M    + L +    A++ A+   G   ++    + +     P
Sbjct: 619 DAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIP 678

Query: 312 LKEDL 316
           L + +
Sbjct: 679 LSDTI 683



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 129/309 (41%), Gaps = 19/309 (6%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  ++G     G+  EA++ F E++    +P +  Y S+++ Y +  K  +A
Sbjct: 359 KPNIVSYNA--LLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKA 416

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
                 +K  NL P   +Y+ LI AYG   + ++    L+ M+ D   P+ ++   L+  
Sbjct: 417 REIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAA 476

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G   +++    +   + + L +    + + +Y+N G  DK    Y  +   +  +K
Sbjct: 477 CGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSM--RKKKIK 534

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLAS-------RIGRTELVWCLRLLSHACLLSHRG 366
            D V     V I      ++   G+ L+        ++  ++ V+   + +++   S  G
Sbjct: 535 SDSV--TYTVLISG--CCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALG 590

Query: 367 ----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                +S    M+S     +V T   +L AY   + ++ L  L  E+    VK D +   
Sbjct: 591 QIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACA 650

Query: 423 ILYDARRIG 431
            L  A   G
Sbjct: 651 ALMRAFNKG 659



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +  D++ ++ K +I  +      +I   C+     EA+   +EM    L  S E+Y+SII
Sbjct: 520 KAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSII 579

Query: 182 HGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
             YSK    +G+  EA    N MK +  SP   TY  ++ AY   + ++++    + M+ 
Sbjct: 580 CAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEE 639

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +    D I    L++ F   G   R+    +SM  K + L  +    ++ A
Sbjct: 640 NDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSA 690


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  P++  +   +  + +  + F +  +I   C +GL++EAV  F++++     P +  
Sbjct: 223 GRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVT 282

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM++    P + TY+ L   Y +   ++E   CL  M 
Sbjct: 283 YNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMA 342

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-MNFGML 295
             G  P+  TYN ++  +   G +      +  M       + +  V  ++ Y +  GML
Sbjct: 343 SKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQM-------KKTGFVPNVNTYNLVLGML 395

Query: 296 DKMEKF 301
            K  +F
Sbjct: 396 GKKSRF 401



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 136/357 (38%), Gaps = 45/357 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           V+R L    +   +  + D       SR++      ++  L   G  E A+  F E+   
Sbjct: 144 VVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQ 203

Query: 169 ALKPSLEIYNSIIHGYSKIGK------------------------------------FNE 192
            + P+L  YN ++  Y ++G+                                     +E
Sbjct: 204 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDE 263

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A+ F  ++K    +P   TY+ L+Q +GK   Y E    L  M+ +GC PD +TYN L  
Sbjct: 264 AVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAG 323

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TP 311
            +A AG  +       +M +K +   + T   ++ AY N G +D+    + ++  +   P
Sbjct: 324 TYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVP 383

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
                   L  +  K+     L+ LG+   S      + W   L     +   RG++   
Sbjct: 384 NVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML----AVCGKRGMEDYV 439

Query: 370 --VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             V+  M S  V  +  T N ++ AY +     +   + +E+ +    P I T   L
Sbjct: 440 TRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNAL 496



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 99/243 (40%), Gaps = 48/243 (19%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VF  W  +    I  F  +++ GM            AFQE++     P L I+NS++  Y
Sbjct: 557 VFPSWVILRTLVIANFKCRRLDGM----------ETAFQEVKARGYNPDLVIFNSMLSIY 606

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--- 241
           +K G +++A    + +K   LSP   TY+ L+  Y K     E +  L  +K   CS   
Sbjct: 607 AKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK---CSQTM 663

Query: 242 -PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM------ 294
            PD ++YN +I  F   GL+K  +     M+   M   + T   ++  Y +  M      
Sbjct: 664 KPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEARE 723

Query: 295 ---------LDKMEKFYKRLLNS----------RTPLKE------DLVRKLAEVYIKNYM 329
                    L  ME  Y+R++ S          R  L E      D  +K  E YI++  
Sbjct: 724 VIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKALEAYIEDAQ 783

Query: 330 FSR 332
           F R
Sbjct: 784 FGR 786



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 57/111 (51%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           S S +  ++ +  K  +  + +  +   +I   C++GL++EA R   EM    + P    
Sbjct: 645 SESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVT 704

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           Y++++ GYS +  F+EA   +  M +  L P   TY  ++++Y + K ++E
Sbjct: 705 YHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEE 755



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 4/292 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    ++      G ++EA+  F +M+     P++  YN ++    K  +F   L  L
Sbjct: 349 NAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEML 408

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM     +P   T++ ++   GK  M D +   L+ M+  G      TYN LI  +   
Sbjct: 409 GEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRC 468

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G        Y  M +       +T  A+L+     G     +    ++        E   
Sbjct: 469 GSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSY 528

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSHR--GIDSVVREM 374
             L + Y K    + +  + +++    G     W  LR L  A     R  G+++  +E+
Sbjct: 529 SLLLQCYAKGGNVAGIAAIENEVYGS-GAVFPSWVILRTLVIANFKCRRLDGMETAFQEV 587

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           ++     ++   N +L  Y K   +     +   +    + PD++T   L D
Sbjct: 588 KARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMD 639



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           A+ PS  I  +++    K  + +       E+K    +P    ++ ++  Y K  MY + 
Sbjct: 556 AVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKA 615

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFA 255
                 +K  G SPD ITYN L+  +A
Sbjct: 616 TEVFDSIKRSGLSPDLITYNSLMDMYA 642


>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 635

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G +  A+  F EM     +P   +YNS+I    H   K     +AL +  +
Sbjct: 122 KLISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEK 181

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK      P   TY+ L++A+ + +  ++++   K +     SPD  T+N ++  +   G
Sbjct: 182 MKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNG 241

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           +++ ME     M + ++ L   T   ++D+Y      DKME+ +K L  S    KE    
Sbjct: 242 MIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRS----KEKPTL 297

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR------ 372
                 I NY  +RL D  +++   +  T++ +    ++H  L+   G+   V       
Sbjct: 298 PTFNSMILNYGKARLKDKAENVFQNM--TDMGYTPSFVTHESLIHMYGLCGCVSNAVELF 355

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++  +KV   V+T N +L  Y      +    L +   +  + PD  T  +LY A
Sbjct: 356 DQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKA 411



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 12/284 (4%)

Query: 157 EAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +A+  F++M+     KP++  YN ++  +++    N+      ++ E ++SP   T++G+
Sbjct: 174 KALGYFEKMKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGV 233

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  YGK  M  E++  L  MK +    D ITYNLLI  +       +ME  +KS+   + 
Sbjct: 234 MDGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKE 293

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                T  +++  Y    + DK E  ++ + +            L  +Y      S   +
Sbjct: 294 KPTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVE 353

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIILLAYL 394
           L D L       ++     +L   C+    +  DS+    +S K+  + TT  ++  AY 
Sbjct: 354 LFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYT 413

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           K    + L  LL ++    V P+          +R   D  GA+
Sbjct: 414 KANSKELLDKLLKQMDKDSVIPN----------KRFFLDALGAI 447



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 91/195 (46%), Gaps = 2/195 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+  +++R + QV  ++K++++S ++   +    ++    + G++ E       M+   
Sbjct: 198 LLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQ 257

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +K  L  YN +I  Y K  +F++       +      P   T++ +I  YGK ++ D+ +
Sbjct: 258 VKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKARLKDKAE 317

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              + M   G +P  +T+  LI  +   G +      +  ++  ++ ++ ST+ A+LD Y
Sbjct: 318 NVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVY 377

Query: 290 MNFGMLDKMEKFYKR 304
              G+  + +  + R
Sbjct: 378 CINGLQQEADSLFTR 392



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 121 QIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           ++ QVF  + ++ EK  +  FNS  +I    +  L ++A   FQ M      PS   + S
Sbjct: 280 KMEQVFKSLSRSKEKPTLPTFNS--MILNYGKARLKDKAENVFQNMTDMGYTPSFVTHES 337

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +IH Y   G  + A+   +++ E  +  +  T + ++  Y    +  E D      K   
Sbjct: 338 LIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIK 397

Query: 240 CSPDHITYNLLIQEFACAG-------LLKRME 264
             PD  TY LL + +  A        LLK+M+
Sbjct: 398 IFPDATTYKLLYKAYTKANSKELLDKLLKQMD 429


>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 36/309 (11%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  QVFDM +     +  E    K+I +L + G    A + F  M    L+P+ E+Y ++
Sbjct: 108 QALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTAL 167

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y +    +EA   LNEMK++ L  P   TY  LI+       +D + +  + M    
Sbjct: 168 LAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERS 227

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKM 298
            +P+ +T N+++  +  AG+  +ME    SML +        TM  I+  + N G +D  
Sbjct: 228 ITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMT 287

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           EK+Y++        +      L   Y K  M+ ++                         
Sbjct: 288 EKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKM------------------------- 322

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N ++ A+    D KH+     ++    +K D 
Sbjct: 323 ---------SSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADT 373

Query: 419 VTIGILYDA 427
            T+  L + 
Sbjct: 374 KTLCCLING 382



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 1/162 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N      ++G   + G+ ++  +    M +    KP +   N+II  +  +G+ +    +
Sbjct: 231 NTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKW 290

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             + +   + P++ T++ LI AYGK +MYD++   ++ M+         TYN +I+ FA 
Sbjct: 291 YEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAD 350

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           AG  K ME T+  M  + M   + T+  +++ Y N G+  K+
Sbjct: 351 AGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKV 392



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +    G ++   + +++   F ++P    +N +I  Y K   +++    +  M+++ 
Sbjct: 274 IISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 333

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+        ++     M+ +G   D  T   LI  +A AGL  ++ 
Sbjct: 334 FPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVI 393

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            + +  L  ++ +  +     A+L A      L +ME+ +KR+ +S+    +     + E
Sbjct: 394 SSVR--LAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIE 451

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 452 AYRKEGMNDKI 462


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C +  +  A + F+EM+   L+P++  YNS+I+G    GK +EAL   
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M  M L P   TY+ LI  + K KM  E    L  +   G +P+ IT+N LI  +  A
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417

Query: 258 GLLKRMEGTY---KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           G   RM+  +     ML   +    ST   ++  +   G + +  K  K +      LK 
Sbjct: 418 G---RMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM--EGNGLKA 472

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           DLV                + L D L     + E    +RLL    L+  +G        
Sbjct: 473 DLV--------------TYNILVDALCK---KGETRKAVRLLDEMTLMEKKG-------- 507

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                R N+ T N+++  +      +    LL+E+  + + P+  T  IL D
Sbjct: 508 ----RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 128/312 (41%), Gaps = 36/312 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +  +I  V  ++K + + RI  N      +I  LC+ G  ++A    ++M+ +   PS+ 
Sbjct: 206 KEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVI 265

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN+II GY K GK  +A   L EM    + P   T++ LI  + + +         + M
Sbjct: 266 TYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM 325

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  P+ +TYN LI      G L    G    M    +     T  A+++ +    ML
Sbjct: 326 QRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKML 385

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
            +          +R  L +   R LA   I    F+ L     D   + GR +  + LR 
Sbjct: 386 KE----------AREMLDDIGKRGLAPNVI---TFNTL----IDAYGKAGRMDDAFLLRS 428

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           +                 M    V  NV+T N +++ + +  + K  R L  E+    +K
Sbjct: 429 M-----------------MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK 471

Query: 416 PDIVTIGILYDA 427
            D+VT  IL DA
Sbjct: 472 ADLVTYNILVDA 483



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G  C EG ++EA +  +EMEG  LK  L  YN ++    K G+  +A+  L+EM  M 
Sbjct: 446 IVG-FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLME 504

Query: 205 LSPQSD---TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              +     TY+ LI+ +      +E +  L  M   G  P+  TY++L  E    G + 
Sbjct: 505 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIP 564

Query: 262 RMEG 265
            ++G
Sbjct: 565 DIDG 568



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 38/193 (19%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++ +++EA     ++    L P++  +N++I  Y K G+ ++A L  + M +  
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL-------------- 250
           + P   TY+ LI  + +     E     K M+ +G   D +TYN+L              
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 251 ------------------------IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                                   I+ F   G L+        ML K +    +T   + 
Sbjct: 495 RLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 554

Query: 287 DAYMNFGMLDKME 299
           D  M  G +  ++
Sbjct: 555 DEMMEKGFIPDID 567


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L  EGL+E+    F EM    +  S+  Y ++I+ Y + G++  +L  L  MK   
Sbjct: 154 IISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRER 213

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I A  +  + ++ +      M+ +G  PD +TYN L+   A  GL    
Sbjct: 214 VSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEA 273

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  +K+M+   +    +T   I++    FG L K+EK               +   L E+
Sbjct: 274 EMVFKTMIEGGIVPEITTYSYIVE---TFGKLGKLEK---------------VAMLLKEM 315

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
             + Y+         D++S        + + + +HA L S +    V ++M++A    N 
Sbjct: 316 ESEGYL--------PDISS--------YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNA 359

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
           +T +I+L  Y K   +  +R L  ++     +PD  T  IL   R  G  G      +K 
Sbjct: 360 STYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNIL--IRVFGEGG-----YFKE 412

Query: 444 IGFLF-KTVEINTDP 457
           +  LF   V+ N DP
Sbjct: 413 VVTLFHDLVDENIDP 427



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 9/220 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F ++    + P++E Y  ++    K G   +A   L  M    
Sbjct: 400 LIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKG 459

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y GLI+AYG+  +YDE  +    M   G      TYN LI  FA  GL K  E
Sbjct: 460 IVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFE 519

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +   + +   I++ Y   G  ++  K +  +   R  L E  +  +  VY
Sbjct: 520 AILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVY 579

Query: 325 IKNYMFSRLDDLGDDL-----ASRIGRTELVWCLRLLSHA 359
                F+ L D   +      AS I  + L +C+ L  +A
Sbjct: 580 C----FAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYA 615



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA+  F++M+     P+   Y+ +++ Y K G++++      +MKE +  P + TY
Sbjct: 338 GSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTY 397

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC--AGLLKRMEGTYKSM 270
           + LI+ +G+   + E+      +  +   P+  TY  L+  FAC   GL +  +     M
Sbjct: 398 NILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV--FACGKGGLHEDAKKILFHM 455

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDK 297
             K +   S     +++AY    + D+
Sbjct: 456 NGKGIVPSSKAYSGLIEAYGQAALYDE 482



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           KS I+ +NS  +I      GL +E       M  + +  + + ++ II GY + G++ EA
Sbjct: 496 KSTIDTYNS--LIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +    EM++M       T +G++  Y    + DE       +K  G  P  + Y +++  
Sbjct: 554 IKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAV 613

Query: 254 FACAG 258
           +A  G
Sbjct: 614 YAKNG 618



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S Q  +    +  +EK R  ++E   + ++G+ C  GL++E+   F E++   + PS+ 
Sbjct: 546 QSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVL 605

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKM 234
            Y  ++  Y+K G++++A   L+EM +  +S        +I+  Y     +  ++     
Sbjct: 606 CYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDK 665

Query: 235 MKLDGCSPDHITYNLLIQ 252
           +  +GC      YN L++
Sbjct: 666 LNAEGCGFGMRFYNTLLE 683


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L  EGL+E+    F EM    +  S+  Y ++I+ Y + G++  +L  L  MK   
Sbjct: 154 IISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRER 213

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I A  +  + ++ +      M+ +G  PD +TYN L+   A  GL    
Sbjct: 214 VSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEA 273

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  +K+M+   +    +T   I++    FG L K+EK               +   L E+
Sbjct: 274 EMVFKTMIEGGIVPEITTYSYIVE---TFGKLGKLEK---------------VAMLLKEM 315

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
             + Y+         D++S        + + + +HA L S +    V ++M++A    N 
Sbjct: 316 ESEGYL--------PDISS--------YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNA 359

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
           +T +I+L  Y K   +  +R L  ++     +PD  T  IL   R  G  G      +K 
Sbjct: 360 STYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNIL--IRVFGEGG-----YFKE 412

Query: 444 IGFLF-KTVEINTDP 457
           +  LF   V+ N DP
Sbjct: 413 VVTLFHDLVDENIDP 427



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 9/220 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F ++    + P++E Y  ++    K G   +A   L  M    
Sbjct: 400 LIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKG 459

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y GLI+AYG+  +YDE  +    M   G      TYN LI  FA  GL K  E
Sbjct: 460 IVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFE 519

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +   + +   I++ Y   G  ++  K +  +   R  L E  +  +  VY
Sbjct: 520 AILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVY 579

Query: 325 IKNYMFSRLDDLGDDL-----ASRIGRTELVWCLRLLSHA 359
                F+ L D   +      AS I  + L +C+ L  +A
Sbjct: 580 C----FAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYA 615



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA+  F++M+     P+   Y+ +++ Y K G++++      +MKE +  P + TY
Sbjct: 338 GSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTY 397

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC--AGLLKRMEGTYKSM 270
           + LI+ +G+   + E+      +  +   P+  TY  L+  FAC   GL +  +     M
Sbjct: 398 NILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV--FACGKGGLHEDAKKILFHM 455

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDK 297
             K +   S     +++AY    + D+
Sbjct: 456 NGKGIVPSSKAYSGLIEAYGQAALYDE 482



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           KS I+ +NS  +I      GL +E       M  + +  + + ++ II GY + G++ EA
Sbjct: 496 KSTIDTYNS--LIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +    EM++M       T +G++  Y    + DE       +K  G  P  + Y +++  
Sbjct: 554 IKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAV 613

Query: 254 FACAG 258
           +A  G
Sbjct: 614 YAKNG 618



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S Q  +    +  +EK R  ++E   + ++G+ C  GL++E+   F E++   + PS+ 
Sbjct: 546 QSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVL 605

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKM 234
            Y  ++  Y+K G++++A   L+EM +  +S        +I+  Y     +  ++     
Sbjct: 606 CYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDK 665

Query: 235 MKLDGCSPDHITYNLLIQ 252
           +  +GC      YN L++
Sbjct: 666 LNAEGCGFGMRFYNTLLE 683


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 7/309 (2%)

Query: 96  QHDGDWTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL 154
           Q    W+ +   A+I+ F     +S+ +    +M K    S +  +N+  I+    +   
Sbjct: 322 QKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNT--IMDAFSKSNQ 379

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEA   F EM+   +KP+   +N +++ YS+  +       L EMK+M L P   +Y  
Sbjct: 380 IEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTC 439

Query: 215 LIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI AYG+ K M D        MK +G  P   +Y  LI  ++ +G  ++    +++ML +
Sbjct: 440 LISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLRE 499

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +     T   +LDA+   G    + K +K ++  +          L + + K+  +   
Sbjct: 500 GLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEA 559

Query: 334 DDLGDDLASRIGRTELVWCLRLL--SHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            D+  +   +IG    V    +L  ++A    H  +  +++EM +  ++ +  T + ++ 
Sbjct: 560 RDVISEF-DKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIY 618

Query: 392 AYLKMKDFK 400
           A+++++DFK
Sbjct: 619 AFVRVRDFK 627



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 35/154 (22%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIY----------------------------------- 177
           G  E+A  AF+ M    LKPS+E Y                                   
Sbjct: 484 GWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTF 543

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++ G++K G + EA   ++E  ++ L P   TY+ L+ AY +   + ++   L+ M  
Sbjct: 544 NTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAA 603

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
               PD +TY+ +I  F      KR    +K M+
Sbjct: 604 RDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMV 637



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  ++    + G   EA     E +   L+P++  YN +++ Y++ G+  +    L E
Sbjct: 543 FNT--LLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQE 600

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           M   +L P S TY  +I A+ + + +       K M   G  PD  +Y  L
Sbjct: 601 MAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKL 651


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 129/343 (37%), Gaps = 40/343 (11%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N+     ++G LC+EG   +AV  +  +       +L   N++IHG  K G   EA+ 
Sbjct: 520 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR 579

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M E        TY+ LI    K    +E       M   G  PD  TYNLLI    
Sbjct: 580 LLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMC 639

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G L      +    ++ +     T   ++D Y     +++ EK +  LL     L   
Sbjct: 640 RIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSV 699

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASR------------------IGRTELVWCL---- 353
           +   L   Y +N        L DD+ S+                  IGR E   CL    
Sbjct: 700 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 759

Query: 354 -------------RLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                         L+   C L     + +V++EM S  +  N  T  +++  Y K  D 
Sbjct: 760 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           K    LL E+  + + PD VT  +L +    GF   G +E  K
Sbjct: 820 KTAAKLLHEMVGKGIVPDTVTYNVLTN----GFCKEGKIEEGK 858



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +E+A++ F +ME   + P++  YN++IHG  K G  +EA  F  +M +  +
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 379

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           +    TY  LI    K + ++E +  LK     G +P+ + YN LI  +   G L     
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K ++  S T+ +I+  +   G +++ E   + +L+
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 481



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 2/179 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A+  F K       I   FDM K      +  +N+  +I  LC+ G ++EA R  ++M  
Sbjct: 319 AINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNN--LIHGLCKHGNLDEAFRFKEKMVK 376

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +  +L  Y+ +I+G  K+ KFNEA   L E  E   +P    Y+ LI  Y K     +
Sbjct: 377 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 436

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                  M   G +P+ +T N +IQ F   G +++ E   + ML++   +       I+
Sbjct: 437 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 495


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 11/289 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC+E  M++A + F EM    + P+   YN++I GY K+G+  EA      MK  N
Sbjct: 223 VIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVEN 282

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ L+    + +M +E    L+ M++ G  PD  TY  L       G +    
Sbjct: 283 VEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASI 342

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLK---EDLVRKL 320
              +  + K + +   T   +L+A    G ++K E+  K+ L N   P+      +V   
Sbjct: 343 TLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGY 402

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
            +V   N  ++ ++ +       +G R   V    L+   C + +    +  +++M    
Sbjct: 403 CQVGDINKAYTTIEKM-----EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKG 457

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           V  NV T N ++  Y +   F     +L E+  + +KP++++ G L + 
Sbjct: 458 VLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINC 506



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +I ++    ++  LC+EG ME+A    ++     L P    +N+I++GY ++G  N+A  
Sbjct: 354 QILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYT 413

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + +M+ + L P   TY+ L++ + + K  +E + C+K M   G  P+  TYN LI  + 
Sbjct: 414 TIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYG 473

Query: 256 CAGLLKR 262
            + L  R
Sbjct: 474 RSCLFDR 480



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 129/305 (42%), Gaps = 4/305 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            RS    + F + + +EK   + N  +   +I  LC++  + EA     +M    + P+ 
Sbjct: 473 GRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNA 532

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           +IYN +I G    GK  +A  F +EM    + P   TY+ LI    K     E +     
Sbjct: 533 QIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASE 592

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           +   G S D ITYN LI  ++ AG +++    Y++M    +    +T   ++      G+
Sbjct: 593 ITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGL 652

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCL 353
           +  +EK Y+ +L         +   L   Y+++    +   L   + A  I   ++ +  
Sbjct: 653 V-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNC 711

Query: 354 RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
            +L H        + ++V +M+   +     T +I+++ + K+KDF    V   E+    
Sbjct: 712 LILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENG 771

Query: 414 VKPDI 418
             P +
Sbjct: 772 FTPSV 776



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 143/338 (42%), Gaps = 27/338 (7%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           FL++   +++      ++  I +S  R ++F   K I    + G ++ A+     M+   
Sbjct: 153 FLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGG 212

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P + +YN +I G  K  +  +A    +EM +  ++P   TY+ LI  Y K    +E  
Sbjct: 213 VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAF 272

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              + MK++   P  IT+N L+     A +++  +   + M          T   + D +
Sbjct: 273 NIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGH 332

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV--YIKNYMFSRLDDLGD-DLASRIGR 346
           +  G +D           +   L E+ VRK  ++  Y  + + + L   G+ + A  + +
Sbjct: 333 LKCGNVD-----------ASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLK 381

Query: 347 TEL--------VWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
             L        V+   +++  C +       + + +ME+  +R N  T N ++  + +MK
Sbjct: 382 KFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMK 441

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYD--ARRIGFD 433
           + +     + ++  + V P++ T   L D   R   FD
Sbjct: 442 NMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFD 479



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 121 QIPQVFDMWKNIEKS-----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           Q+  +   +  IEK      R N      ++   CE   MEEA +  ++M    + P++E
Sbjct: 404 QVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVE 463

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN++I GY +   F+     L EM++  L P   +Y  LI    K     E ++ L  M
Sbjct: 464 TYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDM 523

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLK 261
              G  P+   YN+LI     AG LK
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCIAGKLK 549



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           S  ++ +  E  ++ E+   +  M+   + PS+   N  +       ++ + L   +E+ 
Sbjct: 115 SDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIV 174

Query: 202 EMNLSPQSDTYDGLIQA---YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           E  L P    Y   IQA    G  K   E+  C   MK  G SP    YN++I       
Sbjct: 175 ESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTC---MKRGGVSPGVFVYNVVIGGLCKEK 231

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +K  E  +  ML +R+     T   ++D Y   G L++     +R+
Sbjct: 232 RMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM 278


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  PQ+  M + +  + +  + F +  +I     +GL++EAV  F++++     P +  
Sbjct: 236 GRSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVT 295

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM+E    P + TY+ L  +Y +   Y+E   CL  M 
Sbjct: 296 YNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMV 355

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-MNFGML 295
             G  P+  TYN ++  +  AG +      +  M       + +  +  ++ Y +  GML
Sbjct: 356 SKGILPNAFTYNTIMTAYGNAGKVDEALALFDWM-------KKNGFIPYVNTYNLILGML 408

Query: 296 DKMEKF 301
            K  +F
Sbjct: 409 GKKSRF 414



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/386 (19%), Positives = 149/386 (38%), Gaps = 58/386 (15%)

Query: 130 KNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           K +E+S  + +     ++ G     G  EEA +    M    + P+   YN+I+  Y   
Sbjct: 317 KEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNA 376

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK +EAL   + MK+    P  +TY+ ++   GK   ++ +   L  M   GC+P+ +T+
Sbjct: 377 GKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTW 436

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N ++      G+   +    + M +  + L   T   ++ AY   G      K Y  +  
Sbjct: 437 NTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTA 496

Query: 308 SR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR----------IGRTELVWCLRLL 356
           +  TP           +   N + S L   GD  A++              ++ + L L 
Sbjct: 497 AGFTPC----------LTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQ 546

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            HA   +  GI+++ +E+    V  +      ++++  K +  + +     E+  R  KP
Sbjct: 547 CHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKP 606

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           D+V                           +F +        +L++Y K    R   E++
Sbjct: 607 DLV---------------------------IFNS--------MLSMYAKNGMYRKAGEMF 631

Query: 477 SSLEPYSREKKRWTYQNLIDLVIKHN 502
            S++         TY +++D+  K N
Sbjct: 632 DSIKQGGLSPDLITYNSMMDMYAKSN 657



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 10/206 (4%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VF  W  +    I+ F  +++ G+           RAFQE+     KP L I+NS++  Y
Sbjct: 569 VFPSWVILRTLVISNFKCRRLEGI----------ERAFQEVMARGHKPDLVIFNSMLSMY 618

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           +K G + +A    + +K+  LSP   TY+ ++  Y K     E +  LK +K     PD 
Sbjct: 619 AKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDV 678

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           ++YN ++  F   GL+K  +     M+   +     T   ++  Y +  M  +  +    
Sbjct: 679 VSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSY 738

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMF 330
           ++       E   R++ + Y K   F
Sbjct: 739 MIQRNLSPMELTYRRVVDSYCKAKRF 764



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/321 (18%), Positives = 134/321 (41%), Gaps = 19/321 (5%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F  ++  L   SRS   P              N      ++ +  + G+     R  
Sbjct: 411 KSRFNVMLEMLGEMSRSGCTP--------------NRVTWNTMLAVCGKRGMEGYVTRVL 456

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M+   ++   + +N++I  Y + G    A    +EM     +P   TY+ L+    + 
Sbjct: 457 ERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQ 516

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  MK +G  P+ ++Y+LL+Q  A  G    +E   K +    +      +
Sbjct: 517 GDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVIL 576

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             ++ +      L+ +E+ ++ ++      K DLV    +  +Y KN M+ +  ++ D +
Sbjct: 577 RTLVISNFKCRRLEGIERAFQEVMARGH--KPDLVIFNSMLSMYAKNGMYRKAGEMFDSI 634

Query: 341 ASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                  +L+    ++  +A        + +++ +++++++ +V + N ++  + K    
Sbjct: 635 KQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLI 694

Query: 400 KHLRVLLSELPTRHVKPDIVT 420
           K  + +LSE+    V+P +VT
Sbjct: 695 KEAQRILSEMIADGVRPCVVT 715



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 7/200 (3%)

Query: 107 WAVIRFLKNSS----RSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           W ++R L  S+    R   I + F ++     K  +  FNS  ++ M  + G+  +A   
Sbjct: 573 WVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNS--MLSMYAKNGMYRKAGEM 630

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F  ++   L P L  YNS++  Y+K  +  EA   L  +K   L P   +Y+ ++  + K
Sbjct: 631 FDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCK 690

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +  E    L  M  DG  P  +TY+ L+  +A   +          M+ + +     T
Sbjct: 691 QGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELT 750

Query: 282 MVAILDAYMNFGMLDKMEKF 301
              ++D+Y      D+   F
Sbjct: 751 YRRVVDSYCKAKRFDEARGF 770



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 172 PSLEI--YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEI 228
           P L++  Y +++H  S  G++  AL    E+K   ++P    Y+ ++  YG+  + + +I
Sbjct: 183 PGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQI 242

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
              L+ M+  G  PD  T + +I      GL+
Sbjct: 243 VAMLEEMRAAGVEPDGFTASTVIAACGRDGLV 274


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 145/343 (42%), Gaps = 17/343 (4%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGML 149
            + L+ D  ++ D  +A    +   SR+R+  +   +++ +  E  R N      ++ + 
Sbjct: 61  FESLKQDESYSLD-VYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLY 119

Query: 150 CEEGLMEEAVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            + G   + +++ FQEM+   + P    YN++I    +     EAL    EMKE    P 
Sbjct: 120 GKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 179

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ L+  YGK  M+ E    L  M+  G SP+ +TYN LI  +A AGL        K
Sbjct: 180 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 239

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           S+L+K +     T   ++ A+      ++ E++ K L       K +    +    I   
Sbjct: 240 SLLSKGLCPDEFTYCTLISAF------NRAERYEKALETFTEMRKTNCTPNIVTYNILID 293

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVVREMESAKVRW 381
           ++ R++ L D +       E      L++   LL   G       + +V REM+ A    
Sbjct: 294 IYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 353

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            V T NI++  Y +     +   +   L    ++P + T   L
Sbjct: 354 GVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAAL 396



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/457 (20%), Positives = 179/457 (39%), Gaps = 32/457 (7%)

Query: 57  DYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNS 116
           DY      T  +++ H  +AL  L Q + +   CP ++  +               L   
Sbjct: 145 DYTYNTMITACIQNSHCQEALR-LFQEMKEAGCCPNRVTYN-------------ALLDVY 190

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +     +  ++   +E + I  N     ++I      GL +EA    + +    L P  
Sbjct: 191 GKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDE 250

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y ++I  +++  ++ +AL    EM++ N +P   TY+ LI  YG+ +  D++    K 
Sbjct: 251 FTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKF 310

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+   C+PD +T+N L++ F   G+L  +   ++ M          T   +++ Y   G 
Sbjct: 311 MQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGY 370

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
           +D     YK LL +           L     +   + + + +  ++A   G      C  
Sbjct: 371 VDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMA-EAGLQLSDACHA 429

Query: 355 LLSHACLLSHR--GIDSVVREME-SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
            L H+   S +   +   + E+E SAK   +       +LAY K       ++ L++L  
Sbjct: 430 GLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYD 489

Query: 412 RHVKPDIVTIGILYD--ARRIGFDGTGALEMWKRIGFLFKTVEINTDPL----VLAVYGK 465
               PDI     +    A+R      G +E   ++    +  ++  D +    ++++YG+
Sbjct: 490 NGHSPDIKVFNAMISMCAKR------GWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGR 543

Query: 466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
                  EEV S +    +     TY  L+    KH 
Sbjct: 544 EGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHG 580



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 150/398 (37%), Gaps = 60/398 (15%)

Query: 100 DWTKDHFWAVIRFLKNSS------RSRQIP---QVFDMWKNIEKSRINEFNSQKIIGMLC 150
           +W + H    +R +  +S         Q+P   ++F+  K  E   ++ +    +I +L 
Sbjct: 26  EWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILS 85

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQS 209
                +E +  F+ M+    + +   YN ++  Y K G  ++       EMK++ +SP  
Sbjct: 86  RARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDD 145

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +I A  +     E     + MK  GC P+ +TYN L+  +   G+ K        
Sbjct: 146 YTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVE 205

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M    +     T   ++ AY   G+ D+     K LL+                      
Sbjct: 206 MEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK--------------------- 244

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
                 L  D        E  +C  + +      +        EM       N+ T NI+
Sbjct: 245 -----GLCPD--------EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNIL 291

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL--------EMW 441
           +  Y +M+    +  +   +  ++  PD+VT   L  +    F   G L        EM 
Sbjct: 292 IDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKS----FGNCGMLTEVSNVFREM- 346

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           KR G++     ++T  +++  YG+  ++ Y  ++Y  L
Sbjct: 347 KRAGYM---PGVDTFNILIECYGRCGYVDYSVDIYKGL 381



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 10/213 (4%)

Query: 77  LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR 136
           L   I  L K    PL      G   K    A  +   ++     + Q++D   N     
Sbjct: 444 LRKYIDELEKSAKQPLS-----GILCKTFVLAYCKCCMDNEAQLALNQLYD---NGHSPD 495

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  FN+  +I M  + G +E AV+  +E+    LKP    YN ++  Y + G +++A   
Sbjct: 496 IKVFNA--MISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEV 553

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           ++EM+    +P   TY+ L+ +Y K+   D+       M      PD+ T+N L+  ++ 
Sbjct: 554 MSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSS 613

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            GL K      + M          T  A+LD Y
Sbjct: 614 LGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
            +I    NS +  Q+ +  D  +   K  ++    +  +   C+  +  EA  A  ++  
Sbjct: 430 GLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYD 489

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P ++++N++I   +K G    A+  L E+++  L P   TY+ L+  YG+  MY +
Sbjct: 490 NGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHK 549

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  +  M+  G +P+ ITYN L+  +   G +      +  M+  R+   + T   ++ 
Sbjct: 550 AEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVG 609

Query: 288 AYMNFGM 294
           +Y + G+
Sbjct: 610 SYSSLGL 616



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 8/254 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L  EG  ++  +  QEM    L+ S   +  +IH Y+  G+F +   +++E+++  
Sbjct: 396 LMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSA 455

Query: 205 LSPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P S       + AY K  M +E  + L  +  +G SPD   +N +I   A  G ++R 
Sbjct: 456 KQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERA 515

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               + +   ++     T   ++  Y   GM  K E+    +  +           L   
Sbjct: 516 VKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYS 575

Query: 324 YIKNYMFSRLDD----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           Y K+    R+DD     GD +A+R+      +   + S++ L  ++   SV+  M     
Sbjct: 576 YTKH---GRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGC 632

Query: 380 RWNVTTANIILLAY 393
           +    T   +L  Y
Sbjct: 633 QPTQITFKALLDGY 646


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 155/383 (40%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  KIG    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALD 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   + E+ Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       + +   +A++     L+    L+   C    + ID    ++
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  + TT N ++  +  + D      LL E+ +  + PDIVT   L D     
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE +      L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 26/303 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C++  ++ A   F  M      P+L  +N++I GY    + ++ +  L
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +EM E  L   + TY+ LI  +G Y + D    +D+ L+ M   G  PD +T + L+   
Sbjct: 419 HEMTETGLVADTTTYNTLI--HGFYLVGDLNAALDL-LQEMISSGLCPDIVTCDTLLDGL 475

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSS-----------TMVAILDAYMNFGMLDKMEKFYK 303
              G LK     +K M   +  L +S           T   ++   +N G   + E+ Y+
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHAC 360
            + +            + +   K    SRLD+   + D + S+     +V    L++  C
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQ---SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 361 LLSH--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                  G++ +  EM    +  N  T   ++  + K+ +      +  E+ +  V PD 
Sbjct: 593 KAGRVDDGLE-LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651

Query: 419 VTI 421
           +TI
Sbjct: 652 ITI 654



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 72/349 (20%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  +N+++HG     + +EAL   ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LL 260
              T+  L+    +     E    L  M  DG  P  ITY  ++      G       LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 261 KRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++ME        +  H+  + ++  AI+D+    G     +  +       T ++E  + 
Sbjct: 243 RKME--------EISHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI- 286

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
              +++  N M               GR    W     S A        + +++EM   K
Sbjct: 287 -FPDLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERK 320

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  +V T N ++ A++K   F     L  E+  R + P+ +T   + D 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369


>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 121/255 (47%), Gaps = 4/255 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA   F EM+   +KP+   +N +++ YS+  +       + EM+E  L P +
Sbjct: 377 CKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNA 436

Query: 210 DTYDGLIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
            +Y  +I AYGK K   ++  D  LKM K DG  P   +Y  LI  ++ +G  ++    +
Sbjct: 437 KSYTCIISAYGKQKNMSDMAADAFLKMKK-DGIKPTSHSYTALIHAYSVSGWHEKAYAAF 495

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++M  + +     T  A+LDA+   G    + K +K +   +          L + + K+
Sbjct: 496 ENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKH 555

Query: 328 YMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
             +    D+    A+  +  T + + + + ++A    H  +  ++ EM +  ++ +  T 
Sbjct: 556 GYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTY 615

Query: 387 NIILLAYLKMKDFKH 401
           + ++ A+L+++DF  
Sbjct: 616 STMIYAFLRVRDFSQ 630



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 5/180 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A  AF+ M+   +KPS+E Y +++  + + G     +     M+   +     T+
Sbjct: 486 GWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTF 545

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  + K+  Y E    +      G  P  +TYN+L+  +A  G   ++    + M  
Sbjct: 546 NTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAA 605

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-----AEVYIKN 327
             +   S T   ++ A++      +   +++ ++ S   +  D  +KL     A+  IKN
Sbjct: 606 HNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMDVDSYQKLRAVLDAKAAIKN 665



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 117/284 (41%), Gaps = 14/284 (4%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A + F++M G  +K   E+  ++I  +   G  +EAL+ L+E+++  +S  +  Y+ L
Sbjct: 313 KDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTL 372

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY K    +E +     MK  G  P   T+N+L+  ++     + +E     M    +
Sbjct: 373 MDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGL 432

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IKNYMFSR 332
              + +   I+ AY       K +       ++   +K+D ++  +  Y   I  Y  S 
Sbjct: 433 KPNAKSYTCIISAY------GKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSG 486

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-----VVREMESAKVRWNVTTAN 387
             +        + R  +   +   +       R  D+     + + M   KV     T N
Sbjct: 487 WHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFN 546

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            ++  + K   +K  R ++S+     + P ++T  +L +A   G
Sbjct: 547 TLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARG 590



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 118 RSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R+     +  +WK      +E +R+  FN+  ++    + G  +EA     +     L P
Sbjct: 519 RAGDTQTLMKIWKLMRREKVEGTRVT-FNT--LVDGFAKHGYYKEARDVISKFANVGLHP 575

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           ++  YN +++ Y++ G+ ++    L EM   NL P S TY  +I A+
Sbjct: 576 TVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAF 622


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P++E Y  +I    K G  ++A   L  M E  
Sbjct: 395 LIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKG 454

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+AYG+  MY+E  + L  M   G  P   TYN LI  FA  GL K  E
Sbjct: 455 MIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETE 514

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     +   +++ +   G  ++  K Y  +  SR    E  +  +  VY
Sbjct: 515 AILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVY 574

Query: 325 -IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
            I   +   ++   +  AS I    + +C+ L  +A
Sbjct: 575 CIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYA 610



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 35/283 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L  EGL+E+    F+EM    +  S+  Y ++I+ Y + GK+  +L  L  MK+  
Sbjct: 149 MISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKER 208

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I +  +  + ++ +      M+ +G  PD +TYN L+   +  GL    
Sbjct: 209 VSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEA 268

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  +++M    +    +T   ++D +     LDK+ +  K + ++    +      L E 
Sbjct: 269 EMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEA 328

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           Y                 +RIG  E                     V R M+ A    N 
Sbjct: 329 Y-----------------ARIGNIE-----------------DATGVFRLMQEAGCVPNA 354

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            T +I+L  Y K   +  +R L  E+   + +PD  T   L D
Sbjct: 355 ETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLID 397



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EM      P +  YN ++  Y++IG   +A      M+E    P ++TY  L+  YGK
Sbjct: 307 LKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGK 366

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           +  YDE+      MK+    PD  TYN LI  F   G  K +   +  M  + +     T
Sbjct: 367 HGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMET 426

Query: 282 MVAILDAYMNFGMLDKMEK 300
              ++ A    G+ D  +K
Sbjct: 427 YEGLIFACGKGGLHDDAKK 445



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 4/195 (2%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           G L  EGL+      F EM    ++P +  YN+++   S  G  +EA +    M E  + 
Sbjct: 226 GGLDWEGLL----GLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVV 281

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P   TY  L+  +GK    D++   LK M   G  P+  +YN+L++ +A  G ++   G 
Sbjct: 282 PDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGV 341

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           ++ M        + T   +L  Y   G  D++ + +  +  S T         L +V+ +
Sbjct: 342 FRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGE 401

Query: 327 NYMFSRLDDLGDDLA 341
              F  +  L  D+A
Sbjct: 402 GGYFKEVVTLFHDMA 416



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E+A   F+ M+     P+ E Y+ ++  Y K G+++E      EMK  N  P + TY
Sbjct: 333 GNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATY 392

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC--AGLLKRMEGTYKSM 270
           + LI  +G+   + E+      M  +   P+  TY  LI  FAC   GL    +     M
Sbjct: 393 NTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLI--FACGKGGLHDDAKKILLHM 450

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYM 329
             K M   S     +++AY    M       Y+  L +   + E   +   E Y    YM
Sbjct: 451 SEKGMIPSSKAYTGVIEAYGQAAM-------YEEALVTLNTMNEMGSKPTIETYNTLIYM 503

Query: 330 FSR 332
           F+R
Sbjct: 504 FAR 506



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  +I M    GL +E      +M  F +    + +N +I G+ + G+F EA
Sbjct: 491 KPTIETYNT--LIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEA 548

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +    EM++  L P   T + ++  Y    + DE     + +K  G  P+ + Y +++  
Sbjct: 549 IKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAV 608

Query: 254 FACAGLLKRMEGTYKSMLTKR 274
           +A +            MLT R
Sbjct: 609 YAKSDRWNEAYELLDEMLTNR 629



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           C P+   Y ++I      GLL++    ++ M    +     +  A++++Y   G  +   
Sbjct: 139 CKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSL 198

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG----------RTEL 349
           +  +R+   R             +   N + +     G D    +G          + ++
Sbjct: 199 ELLERMKKERVS---------PSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDI 249

Query: 350 VWCLRLLSHACLLSHRGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           V    LL   C  S+RG+    + V R M    V  ++TT   ++  + K+     +  L
Sbjct: 250 VTYNTLL---CACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSEL 306

Query: 406 LSELPTRHVKPDIVTIGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
           L E+ +    P+I +  +L +A  RIG   D TG   + +  G +       T  ++L +
Sbjct: 307 LKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNA---ETYSILLGL 363

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
           YGK        E++  ++  + E    TY  LID+
Sbjct: 364 YGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDV 398


>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 151/387 (39%), Gaps = 48/387 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K++ +L   G    A   F EM+    +P+ E+Y ++I  
Sbjct: 158 QVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGA 217

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  +EAL  L +MK   L  P   TY  LI+A+     +D +D   K M     +P
Sbjct: 218 YCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAP 277

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME    +ML +        TM  IL  + N G ++ MEK+
Sbjct: 278 NTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKW 337

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +      L   Y K  M+ ++                            
Sbjct: 338 YEKFRGYGIEPETRTFNILIGAYGKKRMYDKM---------------------------- 369

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+ +  D K++    +++ +  +KPD  T 
Sbjct: 370 ------SAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTF 423

Query: 422 GILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP------LVLAVYGKGHFLRYCEEV 475
             L +    GF  + A    K +G +     ++  P       VLA   K   L   E V
Sbjct: 424 CCLIN----GF--SNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERV 477

Query: 476 YSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +  ++    E    TY  L++   K  
Sbjct: 478 FRHMKHMQCEPDAITYSILLEAYRKEG 504



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   + +++  G+ ++P    +N +I  Y K   +++    +  M+ + 
Sbjct: 321 ILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLA 380

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ A L  ++ 
Sbjct: 381 FPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVV 440

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ +  +T    ++L A      L +ME+ ++ + + +          L E
Sbjct: 441 GMVK--LAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLE 498

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELV 350
            Y K  M  ++  L  +  S +  TELV
Sbjct: 499 AYRKEGMTDKMYALQQENPSLVS-TELV 525



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE-LPTRHVKPDIVTIGILY 425
           +D++ +EM    V  N  T NI+L  Y +      +  LLS  L + + KPD+ T+ I+ 
Sbjct: 263 VDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIIL 322

Query: 426 DARRIGFDGTGALEMWKRIGFLFK----TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481
                 F  +G +E+ ++    F+      E  T  +++  YGK    R  +++ + +E 
Sbjct: 323 SL----FGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKK---RMYDKMSAVMEY 375

Query: 482 YSREKKRW---TYQNLIDLVIKH-NGKNLDGTF 510
             R    W   TY N+I+   +  + KN++ TF
Sbjct: 376 MRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTF 408


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 145/336 (43%), Gaps = 31/336 (9%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I  L    R ++  +   +M+ N     +  + S  II   C+ G++  A+  F+ 
Sbjct: 426 YGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTS--IIDGYCKVGMVGAALEVFKL 483

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ME     P+   Y S+I+G  +  K ++A+  + +M+E  ++P   TY  LIQ   K   
Sbjct: 484 MEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 543

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D      +MM+ +G +PD   YN+L      +G   R E  Y  ++ K + L   T  +
Sbjct: 544 FDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRKGVVLTKVTYTS 600

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEVYIKNYMFSRLDDLGD 338
           ++D +   G  D      ++++N     K D      L++ L +    N   S LD +  
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGC--KADLYTYSVLLQALCKQKKLNEALSILDQM-- 656

Query: 339 DLASRIGRTELVWCLRLLSHACLLS-------HRGIDSVVREMESAKVRWNVTTANIILL 391
                      V C  ++++  ++S       H    S+  EM S+  + + TT  + + 
Sbjct: 657 -------TVSGVKC-NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFIS 708

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +Y K+   +    L+ E+    V PD+VT  I  + 
Sbjct: 709 SYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFING 744



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + + +    ++  LC++  + EA+    +M    +K ++  Y  II    K GK + 
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A    NEM      P + TY   I +Y K    +E +  +  M+ DG +PD +TYN+ I 
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFIN 743

Query: 253 EFACAGLLKRMEGTYKSML 271
                G + R   T K M+
Sbjct: 744 GCGHMGYIDRAFSTLKRMV 762



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG + +A     EM    + PS+  YN++I GY K G+  +AL     M++  
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNG 349

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            +P   TY+ LI      K+ DE +  L      G +P  IT+  LI  +
Sbjct: 350 CNPDDWTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGY 398



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 162/401 (40%), Gaps = 59/401 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +++A+R    M     K  L+ Y  +I+   K  +  EA   LNEM    
Sbjct: 394 LINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG 453

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF-------ACA 257
           L+P   TY  +I  Y K  M        K+M+ +GC P+  TY  LI             
Sbjct: 454 LAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAM 513

Query: 258 GLLKRME--GTYKSMLTKRMHLRSSTMVAILD-AYMNFGMLDKM-----EKFYKRLLNS- 308
            L+ +M+  G    ++T    ++        D A+  F M+++      E+ Y  L ++ 
Sbjct: 514 ALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDAL 573

Query: 309 -RTPLKED----LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC- 360
            ++   E+    LVRK   V  K    S +D       S+ G T+    L  ++++  C 
Sbjct: 574 CKSGRAEEAYSFLVRK-GVVLTKVTYTSLVDGF-----SKAGNTDFAAVLIEKMVNEGCK 627

Query: 361 ------------LLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
                       L   + ++   S++ +M  + V+ N+    II+   +K     H + L
Sbjct: 628 ADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSL 687

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVY-- 463
            +E+ +   KP   T  +   +    +   G +E  + +    +   +  D +   ++  
Sbjct: 688 FNEMISSGHKPSATTYTVFISS----YCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFIN 743

Query: 464 GKGHFLRYCEEVYSSLE---PYSREKKRWTYQNLIDLVIKH 501
           G GH + Y +  +S+L+     S E   WTY     L++KH
Sbjct: 744 GCGH-MGYIDRAFSTLKRMVDASCEPNCWTYW----LLLKH 779



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 12/299 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G +  A R F  +    ++      N+++ GY +     +A   L  M  M      
Sbjct: 190 CKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  LIQ   + +   E  + + MM  DGCS +  TY LLI+     G +    G    
Sbjct: 250 YSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDE 309

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M  + +     T  A++D Y   G + K     K L+       +D         I    
Sbjct: 310 MPLRGVVPSVWTYNAMIDGYCKSGRM-KDALGIKALMEQNGCNPDDWTYN---SLIYGLC 365

Query: 330 FSRLDDLGDDLASRIGR--TELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVT 384
             +LD+  + L   I R  T  V     L +    + R ID  +R    M S+  + ++ 
Sbjct: 366 GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAER-IDDALRVKSNMISSNCKLDLQ 424

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALEMWK 442
              +++   +K    K  +  L+E+    + P++VT   + D   ++G  G  ALE++K
Sbjct: 425 AYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVG-AALEVFK 482



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 49/110 (44%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            + M    L P++  Y+SII G+ K  +  EA + L+ M   ++SP  + Y  LI+    
Sbjct: 809 LERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCD 868

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
            K++ +    +  M   G  P   +Y+ LI      G   R +  +  +L
Sbjct: 869 IKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLL 918


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 17/291 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG++ EA   F+ M    ++P +  YN+++ GY      NEA      M    
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG 368

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + +Y+ LI  Y K +  DE    L  M     +PD +TY+ L+Q     G  K   
Sbjct: 369 CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEAL 428

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL---- 320
             +K M +   H    T V +LD +   G LD+  K  K +   +  L+ ++V       
Sbjct: 429 NLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK--LEPNIVHYTILIE 486

Query: 321 -----AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
                 ++ +   +FS+L   GD     I RT  V    LL     LS    D + R+ME
Sbjct: 487 GMFIAGKLEVAKELFSKL--FGDGTRPDI-RTYTVMIKGLLKEG--LSDEAYD-LFRKME 540

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 N  + N+++  +L+ +D      L+ E+  +    ++ T  +L D
Sbjct: 541 DDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 30/352 (8%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F A+I  L N  + ++  ++F +M K   +  +  + +  +I  LC+ G    AV  F++
Sbjct: 166 FNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTT--VINGLCKTGNTSMAVDVFKK 223

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ME    KP++  Y++II    K    N+A+ FL+EM E  + P   TY+ ++  +     
Sbjct: 224 MEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQ 283

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +E     K M      P+ +T+ +L+      G++      +++M  K +    ST  A
Sbjct: 284 LNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNA 343

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-------EVYIKNYMFSRLDDLG 337
           ++D Y             +RL+N    + E ++RK          + I  Y  SR  D  
Sbjct: 344 LMDGYC-----------LQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEA 392

Query: 338 DDLASRIGRTEL----VWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLA 392
             L + +    L    V    L+   C L   +   ++ +EM S     N+ T  I+L  
Sbjct: 393 KSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDG 452

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           + K         LL  +  + ++P+IV   IL +   I     G LE+ K +
Sbjct: 453 FCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIA----GKLEVAKEL 500



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 15/307 (4%)

Query: 127 DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D++K +E++  + N      II  LC++ L+ +A+    EM    + P++  YNSI+HG+
Sbjct: 219 DVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGF 278

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
             +G+ NEA     EM   ++ P + T+  L+    K  M  E  +  + M   G  PD 
Sbjct: 279 CNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDI 338

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEK 300
            TYN L+  +    L+   +  ++ M+ K     + +   +++ Y     +D+    + +
Sbjct: 339 STYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAE 398

Query: 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
            Y + LN  T     L++ L ++           +L  ++ S      LV  + LL   C
Sbjct: 399 MYHKALNPDTVTYSTLMQGLCQLGRPKEAL----NLFKEMCSYGPHPNLVTYVILLDGFC 454

Query: 361 LLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
              H  +D    +++ M+  K+  N+    I++         +  + L S+L     +PD
Sbjct: 455 --KHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPD 512

Query: 418 IVTIGIL 424
           I T  ++
Sbjct: 513 IRTYTVM 519



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 128/319 (40%), Gaps = 7/319 (2%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +FL + ++ +Q   V  +   ++  R+  N ++   +I  LC    ++ +V    +M   
Sbjct: 98  KFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKL 157

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P    +N++I+G    GK  EA+   NEM +    P   +Y  +I    K       
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               K M+ +GC P+ +TY+ +I       L+         M+ + +     T  +I+  
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHG 277

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           + N G L++  + +K ++             L +   K  M S    + + +  +    +
Sbjct: 278 FCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD 337

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA---NIILLAYLKMKDFKHLRVL 405
           +     L+   CL   R ++   +  E    +     A   NI++  Y K +     + L
Sbjct: 338 ISTYNALMDGYCL--QRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSL 395

Query: 406 LSELPTRHVKPDIVTIGIL 424
           L+E+  + + PD VT   L
Sbjct: 396 LAEMYHKALNPDTVTYSTL 414



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 42/277 (15%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+ +F  M     +PS+  +   +  ++K  +++  +   N+M    ++    + + 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 215 LIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI    +    D  + +  KM KL G  PD IT+N LI      G +K     +  M+ +
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKL-GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKR 192

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR- 332
                  +   +++     G                T +  D+ +K+ +   K  + +  
Sbjct: 193 GHEPNVISYTTVINGLCKTG---------------NTSMAVDVFKKMEQNGCKPNVVTYS 237

Query: 333 --LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             +D L  D              RL++ A           + EM    +  NV T N I+
Sbjct: 238 TIIDSLCKD--------------RLVNDAM--------EFLSEMVERGIPPNVFTYNSIV 275

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +  +        L  E+  R V P+ VT  IL D 
Sbjct: 276 HGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDG 312


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%)

Query: 149  LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            LC  G ++EA+  F+EMEG  +   +  YNS+IHG S+ G + E   FLN M +   SP 
Sbjct: 1130 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 1189

Query: 209  SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            + T+  LI    K     E    L++M+  G  PD +TYN L+      G L+     ++
Sbjct: 1190 AFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 1249

Query: 269  SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            S+  + + L   +   +++ Y     +D+  +F++ +
Sbjct: 1250 SLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEM 1286



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 122/306 (39%), Gaps = 6/306 (1%)

Query: 140  FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            F    II  LC++G+  EA+  F EM G  + P + +Y+S++ G  + G+  EAL F  E
Sbjct: 1086 FTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 1145

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            M+   +S    TY+ LI    +  ++ E+   L +M   G SPD  T+ +LI      G 
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205

Query: 260  LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            +   +   + M  K       T   +++     G L+   K ++ L +    L       
Sbjct: 1206 VGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNI 1265

Query: 320  LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
            L   Y K+          +++  +  +   V    L+   C     R    +  EM++  
Sbjct: 1266 LINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 1325

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
                ++T  ++L    K    +    L   +     KP+I    IL D    G    G L
Sbjct: 1326 QFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLD----GMCRAGKL 1381

Query: 439  -EMWKR 443
             E WK+
Sbjct: 1382 EEAWKQ 1387



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%)

Query: 149  LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            LC+ G +EEA+  FQ ++    KP++E+++ ++ G  + GK  EA    +E+ +  L P 
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 1399

Query: 209  SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +  Y+ LI       M  E    L  M+  GC PD IT+N++IQ
Sbjct: 1400 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 1443



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 95   LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLC 150
            +Q  G + K   + V+  L    ++  + +  D++++I+K+     I  F+   ++  +C
Sbjct: 1321 MQTCGQFLKLSTYCVL--LDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSI--LLDGMC 1376

Query: 151  EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
              G +EEA + F E+    L+P    YN +I+G    G  +EA+  L +M+E    P S 
Sbjct: 1377 RAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSI 1436

Query: 211  TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            T++ +IQ   K     E    L+ M+    SPD    ++L+
Sbjct: 1437 TFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +IG LC+ G +  A + F EM+       L  Y  ++ G  K G   EA+     +K+  
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 205  LSPQSDTY----DGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
              P  + +    DG+ +A GK    +K +DEI         +G  PD I YN+LI     
Sbjct: 1361 HKPNIEVFSILLDGMCRA-GKLEEAWKQFDEISK-------NGLEPDTIAYNILINGLCN 1412

Query: 257  AGLL 260
             G+L
Sbjct: 1413 KGML 1416



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 116/292 (39%), Gaps = 13/292 (4%)

Query: 147  GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
            G+  E G+  +AV+ F EM    L    + Y  +I+G  K  K   A+    +MK  N  
Sbjct: 1025 GVWMENGI-PDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKG-NCK 1082

Query: 207  PQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
                TY  +I A  K  M  E +DM  +M+   G  PD + Y+ L+      G LK    
Sbjct: 1083 GDVFTYGMIIDALCKDGMTTEALDMFSEMIGA-GILPDVVVYSSLMDGLCRFGRLKEALE 1141

Query: 266  TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
             +K M  + +     T  +++      G+  ++  F   +++            L +   
Sbjct: 1142 FFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLC 1201

Query: 326  KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK---VRWN 382
            K         + + +  +    +++    L++  CL+    ++   +  ES     ++ N
Sbjct: 1202 KEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ--LEDATKLFESLADRGIKLN 1259

Query: 383  VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
            V + NI++  Y K +          E+  + +KP  VT    IG L  + R+
Sbjct: 1260 VFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRV 1311


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 172/429 (40%), Gaps = 52/429 (12%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  P++  + + +  + +  ++F +  +I     +GL+++AV  F++++     P +  
Sbjct: 138 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 197

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM++    P + TY+ L   Y +   ++E   CL  M 
Sbjct: 198 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 257

Query: 237 LDGCSPDHITYNLLIQEFACAG-------LLKRME--------GTYK---SMLTKRMHLR 278
             G  P+  TYN ++  +A  G       L  RM+         TY     ML K+   R
Sbjct: 258 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS--R 315

Query: 279 SSTMVAILDAYMNFGMLDK---------------MEKFYKRLLNSRTPLKEDLVRKLAEV 323
            + M+ +L+     G                   ME +  R+LN       +L R     
Sbjct: 316 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNT 375

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-LLSHRG----IDSVVREMESAK 378
            I  Y           +   +  +    CL   +    +LS +G      S+V +M    
Sbjct: 376 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 435

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL----YDARRIGFDG 434
            + N  + +++L  Y K  +   +  +  E+    + P  V +  L    +  RR+  +G
Sbjct: 436 FKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL--EG 493

Query: 435 T-GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493
              A +  K  G+    V  N+   +LA+Y K        E++ S++         TY +
Sbjct: 494 VEKAFQEVKAQGYKPDLVIFNS---MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 550

Query: 494 LIDLVIKHN 502
           L+D+  K N
Sbjct: 551 LMDMYAKSN 559



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E   +AFQE++    KP L I+NS++  Y+K G +++A    + +K+  LSP   TY+ 
Sbjct: 491 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 550

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y K     E +  LK +K     PD ++YN +I  F   GL+K  +     M+   
Sbjct: 551 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 610

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           M     T   ++  Y +  M ++  +    +++      E   R++ + Y K
Sbjct: 611 MAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCK 662



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 143/342 (41%), Gaps = 26/342 (7%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F A++  L+  SRS   P              N      ++ +  + G+ +   R  
Sbjct: 313 KSRFTAMLEMLEEMSRSGCTP--------------NRVTWNTMLAVCGKRGMEDYVTRVL 358

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M+   ++ S + YN++I  Y + G    A    +EM     +P   TY+ L+    + 
Sbjct: 359 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 418

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  M  +G  P+  +Y+LL+Q +A  G    +E   K +    +      +
Sbjct: 419 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 478

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             ++ A      L+ +EK ++ +       K DLV    +  +Y KN ++S+  ++ D +
Sbjct: 479 RTLVIANFKCRRLEGVEKAFQEV--KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 536

Query: 341 ASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                  +L+    L+  +A        + ++++++S++V+ +V + N ++  + K    
Sbjct: 537 KQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLI 596

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           K  + +LSE+    + P +VT   L         G  +LEM+
Sbjct: 597 KEAQRILSEMIADGMAPCVVTYHTL-------VGGYASLEMF 631



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 8/231 (3%)

Query: 107 WAVIRFLKNSS-RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           W ++R L  ++ + R++  V   ++ ++    K  +  FNS  ++ M  + GL  +A   
Sbjct: 475 WVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS--MLAMYAKNGLYSKATEM 532

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F  ++   L P L  YNS++  Y+K  +  EA   L ++K   + P   +Y+ +I  + K
Sbjct: 533 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 592

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +  E    L  M  DG +P  +TY+ L+  +A   +          M+   +     T
Sbjct: 593 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELT 652

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
              ++D+Y      D+  +F   + ++     + L + + E  IK+  F R
Sbjct: 653 YRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL-QHMLEARIKDAQFGR 702



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 118/324 (36%), Gaps = 43/324 (13%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +++H  S+ G++  AL    E++   + P   TY+ ++  YG+  + +  I   L+ M
Sbjct: 92  YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 151

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-STMVAILDAYMNFGM 294
           +  G  PD  T + +I      GLL +    ++  L  R H+    T  A+L  +   G 
Sbjct: 152 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFED-LKARGHVPCVVTYNALLQVFGKAGN 210

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
             +  +  K + +S          +LA  Y +   F                 E   CL 
Sbjct: 211 YTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE----------------EAAKCLD 254

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
            ++   LL                   N  T N ++ AY  +        L   +     
Sbjct: 255 TMTSKGLLP------------------NTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 296

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVYGKGHFLRY 471
            P++ T  +++         T  LEM +   R G     V  NT   +LAV GK     Y
Sbjct: 297 VPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNT---MLAVCGKRGMEDY 353

Query: 472 CEEVYSSLEPYSREKKRWTYQNLI 495
              V + ++    E  R TY  LI
Sbjct: 354 VTRVLNGMKSCGVELSRDTYNTLI 377


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 40/406 (9%)

Query: 25  KKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRL 84
           K  KL   R  F K L           +  ++ Y S  H   +  S+ + + L A + R 
Sbjct: 22  KAGKLNDARNLFQKLLHSG-------VTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 85  NKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN-IEKSRINEFNS- 142
                CP   + ++              +  S +   + +  D+ K  IE   + +  + 
Sbjct: 75  G----CPPSPVTYN------------VMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC+   +EEA+  F EME     P+   +N+II G  +  K ++A    +EM+ 
Sbjct: 119 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            ++ P S +Y  LI    K    +E     + M   G +P  +TYN++I     A  L  
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP---LKEDLVR 318
               +KSM +K       T   ++DA+   G LD+  +  KR+  +   P       L+ 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 319 KLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREM 374
            L  +       +R+DD   L +D+  R  +  +V    L+   C     +    V+  M
Sbjct: 299 GLCSI-------ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            S+    +V T N ++  + +    +  R LLS++  R + P++VT
Sbjct: 352 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 122/308 (39%), Gaps = 5/308 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +I Q   ++  +E   I  + ++   +I  L + G + EA + FQ M    + PS   YN
Sbjct: 165 KIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYN 224

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +IHG       +EAL     M+     P   T++ LI A+ K    DE    LK M  D
Sbjct: 225 VVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDD 284

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  PD +TY+ LI        +       + M+ ++      T   ++      G + + 
Sbjct: 285 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 344

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
            +    +++S           L   + +     R  +L  D+ +R     +V    L+S 
Sbjct: 345 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404

Query: 359 ACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            C  ++R  ++  V  +M+S+    N+ T   ++L +           L  E+    + P
Sbjct: 405 LC-KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISP 463

Query: 417 DIVTIGIL 424
           D V  G L
Sbjct: 464 DHVVYGTL 471



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G + +A   FQ++    + PS   Y S+IHG      F++A     +M    
Sbjct: 16  LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             P   TY+ +I A  K  M +E    +K M  DG  PD +TYN ++
Sbjct: 76  CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 3/155 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +I  L  + R ++  +V D M  + +   +  +N+  ++   C  G  E A     +M  
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT--LVHGHCRAGQTERARELLSDMVA 388

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P++  Y +++ G  K  +  EA     +MK    +P   TY  LI  +      D 
Sbjct: 389 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDG 448

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                  M   G SPDH+ Y  L  E   +G   R
Sbjct: 449 GLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSAR 483



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P    Y  +I G +K GK N+A     ++    ++P +  Y  LI        +D+  
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
                M   GC P  +TYN++I      G+L+      K M+
Sbjct: 66  ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI 107


>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
 gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
 gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 499

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 21/319 (6%)

Query: 124 QVFDMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  D+++ ++K R    ++    K+I ++  +G +  A+  F +M     KP   +YNS+
Sbjct: 106 QCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSL 165

Query: 181 I----HGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           I    H   K     +AL +  +MK +    P   TY+ L++A+ +     ++DM  K +
Sbjct: 166 IGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDL 225

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
                SPD  TYN ++  +   G++K ME     M + +      T   ++D+Y      
Sbjct: 226 DESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTF 285

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           DKME+ +K LL S    KE          I NY  +RL +  + +  ++   EL +    
Sbjct: 286 DKMEQVFKSLLRS----KERPTHPTFNSMITNYGRARLREKAESVVEKM--EELGFKPNY 339

Query: 356 LSHACLL---SHRGIDSVVR----EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           ++  CL+   +H    S  R    E+ +++ + ++++ N +L AY           LL  
Sbjct: 340 VTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDT 399

Query: 409 LPTRHVKPDIVTIGILYDA 427
              + V P+  T  +LY A
Sbjct: 400 ALQQCVVPNGSTYKLLYKA 418



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 6/267 (2%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+     +P++  YN ++  +++ G   +  +   ++ E  +SP   TY+
Sbjct: 179 LAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYN 238

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK   C PD IT+N+LI  +       +ME  +KS+L  
Sbjct: 239 GVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS 298

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFS 331
           +      T  +++  Y    + +K E   +++       K + V +  L  +Y      S
Sbjct: 299 KERPTHPTFNSMITNYGRARLREKAESVVEKM--EELGFKPNYVTQECLIIMYAHCDCVS 356

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIIL 390
           +   + D+L +   +  L     +L   C+   H   D ++       V  N +T  ++ 
Sbjct: 357 KARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLY 416

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPD 417
            AY K  D   ++ LL  +  + + P+
Sbjct: 417 KAYTKANDKLLVQKLLKRMNKQGIVPN 443



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/187 (16%), Positives = 88/187 (47%), Gaps = 3/187 (1%)

Query: 109 VIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++R    +  ++Q+  +F D+ +++    +  +N   ++    + G+++E       M+ 
Sbjct: 205 LLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNG--VLDAYGKNGMIKEMESVLVRMKS 262

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P +  +N +I  Y +   F++       +      P   T++ +I  YG+ ++ ++
Sbjct: 263 TQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREK 322

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  ++ M+  G  P+++T   LI  +A    + +    +  ++T +  +  S++ ++L+
Sbjct: 323 AESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLE 382

Query: 288 AYMNFGM 294
           AY   G+
Sbjct: 383 AYCMNGL 389



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +D + ++++ + V  +V T N +L AY K    K +  +L  + +   +PD++T  IL D
Sbjct: 218 VDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILID 277

Query: 427 A--RRIGFDGTGALEMWKRIGFLFKTVEINTDPL---VLAVYGKGHFLRYCEEVYSSLE 480
           +  R+  FD     +M +    L ++ E  T P    ++  YG+       E V   +E
Sbjct: 278 SYGRKQTFD-----KMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKME 331


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 39/313 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G ++  ++  +EM+   LKP+   YN +I    K GK  EA   L EM    
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 205 LSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++P    Y  LI  + K       Y+++DE       M+    SPD ITY  +I      
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDE-------MQKRKISPDFITYTAVICGLCQT 406

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--------SR 309
           G +   +  +  M+ KR+     T  A++D Y   G + +    + ++L         + 
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY 466

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           T L + L  K  EV   N +   +   G +L         ++    L +  L     ID 
Sbjct: 467 TALADGLC-KCGEVDTANELLHEMCRKGLELN--------IYTYNSLVNG-LCKAGNIDQ 516

Query: 370 VV---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            V   ++ME A    +  T   ++ AY K ++      LL ++  R ++P +VT  +L +
Sbjct: 517 AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 576

Query: 427 ARRIGFDGTGALE 439
               GF  +G LE
Sbjct: 577 ----GFCMSGMLE 585



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 122 IPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           +   + ++  ++K +I+        +I  LC+ G + EA + F EM    L+P    Y +
Sbjct: 374 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 433

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I GY K GK  EA    N+M +M L+P   TY  L     K    D  +  L  M   G
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 493

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              +  TYN L+     AG + +     K M     H  + T   ++DAY
Sbjct: 494 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + AVI  L  + R  +  ++F   + K +E    +E     +I   C+EG M+EA     
Sbjct: 396 YTAVICGLCQTGRVMEADKLFHEMVCKRLEP---DEVTYTALIDGYCKEGKMKEAFSLHN 452

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M    L P++  Y ++  G  K G+ + A   L+EM    L     TY+ L+    K  
Sbjct: 453 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 512

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             D+    +K M++ G  PD +TY  L+  +  +  + R     + ML + +     T  
Sbjct: 513 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 572

Query: 284 AILDAYMNFGMLDKMEKFYKRLL 306
            +++ +   GML+  EK  K +L
Sbjct: 573 VLMNGFCMSGMLEDGEKLLKWML 595



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +  A R F EM+   + P    Y ++I G  + G+  EA    +EM    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P   TY  LI  Y K  KM +   +  +M+++ G +P+ +TY  L       G +   
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKCGEVDTA 482

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
                 M  K + L   T  ++++     G +D+  K  K +  +           L + 
Sbjct: 483 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 542

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWN 382
           Y K+    R  +L   +  R  +  +V    L++  C+       + +++ M    +  N
Sbjct: 543 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 602

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            TT N ++  Y    + +    +   +  + V PD  T  IL
Sbjct: 603 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNIL 644



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 120/307 (39%), Gaps = 18/307 (5%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII- 181
           P+VFD++  +                L E G+++EA + F +M  + L  S++  N  I 
Sbjct: 182 PRVFDIFFQV----------------LVEAGMLDEARKLFDKMLNYGLLISVDSCNLFIS 225

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           H    +     AL    E  E+ +   + +Y+ +  +  +     E    L  M+L GC 
Sbjct: 226 HLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCI 285

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD I+Y+ +I  +   G L+R+    + M  K +     T   ++      G + + E+ 
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
            + +++        +   L + + K    S    L D++  R    + +    ++   C 
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 362 LSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                  D +  EM   ++  +  T   ++  Y K    K    L +++    + P+IVT
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 421 IGILYDA 427
              L D 
Sbjct: 466 YTALADG 472


>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 36/309 (11%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  QVFDM +     +  E    K+I +L + G    A + F  M    L+P+ E+Y ++
Sbjct: 108 QALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTAL 167

Query: 181 IHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y +    +EA   LNEMK++    P   TY  LI+       +D +++  + M    
Sbjct: 168 LAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERS 227

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             P+ +T N+++  +  AG+  +ME    SM L+        TM  I+  + N G +D M
Sbjct: 228 IMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMM 287

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           EK+Y++        +      L   Y K  M+ ++                         
Sbjct: 288 EKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKM------------------------- 322

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N ++ A+    D KH+     ++    +K D 
Sbjct: 323 ---------SSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADT 373

Query: 419 VTIGILYDA 427
            T+  L + 
Sbjct: 374 KTLCCLING 382



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 1/162 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N      ++G   + G+ ++  +    M      KP +   N+II  +  +G+ +    +
Sbjct: 231 NTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMMEKW 290

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             + +   + P++ T++ LI AYGK +MYD++   ++ M+         TYN +I+ FA 
Sbjct: 291 YEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAD 350

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           AG  K ME T+  M  + M   + T+  +++ Y N G+  K+
Sbjct: 351 AGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKV 392



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +    G ++   + +++   F ++P    +N +I  Y K   +++    +  M+++ 
Sbjct: 274 IISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 333

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+        ++     M+ +G   D  T   LI  +A AGL  ++ 
Sbjct: 334 FPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVI 393

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            + +  L  ++ +  +     A+L A      L +ME+ +KR+ +S+    +     + E
Sbjct: 394 SSVR--LAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIE 451

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 452 AYRKEGMNDKI 462


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+  ++ +  D++  +E+  I  N      +I  LC+   M++A R  ++M G  ++P+ 
Sbjct: 235 SKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNN 294

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN +IHGYS  G + E++    EM    L P     +  + A  K+    E       
Sbjct: 295 MTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDS 354

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M L G  PD I+Y  L+  +A AG +  M+  +  M+ + +         +++AY   GM
Sbjct: 355 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 414

Query: 295 LDK 297
           +DK
Sbjct: 415 MDK 417



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I      G+ +E+VR F+EM    L P +   NS +    K G+  EA  
Sbjct: 291 RPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARD 350

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + M      P   +Y  L+  Y        +D    +M  +G  PD   +N LI  +A
Sbjct: 351 IFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYA 410

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKE 314
             G++ +    ++ M  + ++    T   ++ A+   G L D MEKF   ++++  P   
Sbjct: 411 RLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF-NHMIDTGVPPDT 469

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH--RGIDSVV 371
            +   L +         +  +L  D+ S+ I    + +   ++++ C       G D V 
Sbjct: 470 AVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVD 529

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             + + + R N+ T N ++  Y  + + K    LL  + +  V+PDI T   L D 
Sbjct: 530 LIIHTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 584



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P +  YN++I G+SK G+ ++A     +M+E  + P   TY  LI    K K  D+ 
Sbjct: 219 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 278

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           +  L+ M   G  P+++TYN LI  ++ +G+ K     +K M
Sbjct: 279 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM 320



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + K I    I  F S  II  LC+EG + E       +     +P+L  +NS++ GY  +
Sbjct: 496 LSKGIPPPCIKFFTS--IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLV 553

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA+  L+ M+ + + P   TY+ L+  Y K+   D+     + M     +   ++Y
Sbjct: 554 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 613

Query: 248 NLLIQ 252
           N+++ 
Sbjct: 614 NIILH 618



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/274 (18%), Positives = 107/274 (39%), Gaps = 4/274 (1%)

Query: 158 AVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           AV  F+ M+  A     P++  YN +I+ Y +  + +  L     +    L P   +Y+ 
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI  + K    D+       M+  G  P+ +TY+ LI        + + E   + M+   
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   + T   ++  Y   GM  +  + +K + +S                 K+       
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349

Query: 335 DLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           D+ D +  +  + +++    LL  +A      G+D++   M    V  +    N ++ AY
Sbjct: 350 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++       ++  ++  + V PDI+T   +  A
Sbjct: 410 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 443



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F ++I  L    R  +   V D+  +  ++  +  FNS  ++   C  G M+EAV     
Sbjct: 508 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNS--LVDGYCLVGNMKEAVGLLDS 565

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA 218
           ME   ++P +  YN+++ GY K G+ ++AL    +M    ++  S +Y+    GL QA
Sbjct: 566 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQA 623



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC     +EA    +++    +K  +  +N +I    K+G+  EA      +    
Sbjct: 651 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 710

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  +I    K + +++ D     M+   C+PD    N +I+     G + +  
Sbjct: 711 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAK-A 769

Query: 265 GTYKSMLTKRMHLRSSTMVAIL 286
           G Y S + K+  L  +T  ++L
Sbjct: 770 GNYLSKIDKKGILPEATTTSLL 791


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 156/413 (37%), Gaps = 51/413 (12%)

Query: 76  ALNALIQRLNK-----KVSCPLQ-ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-- 127
            LN++IQ   K     +  C L+ +L          F  +I +L  +SR     +     
Sbjct: 388 TLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREM 447

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + +N+   R N+     ++G LC+EG   +AV  +  +       +L   N++IHG  K 
Sbjct: 448 LLRNM---RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKT 504

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA+  L +M E        TY+ LI    K    +E       M   G  PD  TY
Sbjct: 505 GNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 564

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           NLLI      G L      +    ++ +     T   ++D Y     +++ EK +  LL 
Sbjct: 565 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT 624

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR------------------IGRTEL 349
               L   +   L   Y +N        L DD+ S+                  IGR E 
Sbjct: 625 QNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMED 684

Query: 350 VWCL-----------------RLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILL 391
             CL                  L+   C L     + +V++EM S  +  N  T  +++ 
Sbjct: 685 AKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMID 744

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            Y K  D K    LL E+  + + PD VT  +L +    GF   G +E   +I
Sbjct: 745 GYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN----GFCKEGKIEEGFKI 793



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +E+A++ F +ME   + P++  YN++IHG  K G  +EA  F  +M +  +
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           +    TY  LI    K + ++E +  LK     G +P+ + YN LI  +   G L     
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K ++  S T+ +I+  +   G +++ E   + +L+
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 414



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 2/179 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A+  F K       I   FDM K      +  +N+  +I  LC+ G ++EA R  ++M  
Sbjct: 252 AINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNN--LIHGLCKHGNLDEAFRFKEKMVK 309

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +  +L  Y+ +I+G  K+ KFNEA   L E  E   +P    Y+ LI  Y K     +
Sbjct: 310 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 369

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                  M   G +P+ +T N +IQ F   G +++ E   + ML++   +       I+
Sbjct: 370 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 428



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 3/187 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + +N+E   +N      +I   C  G   EA +   +M    + P+   Y+S+IHG   I
Sbjct: 623 LTQNLE---LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNI 679

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G+  +A   ++EM++  L P    Y  LI  Y K    D++   L+ M      P+ ITY
Sbjct: 680 GRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 739

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            ++I  ++ +G +K        M+ K +   + T   + + +   G +++  K    +  
Sbjct: 740 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQ 799

Query: 308 SRTPLKE 314
              PL E
Sbjct: 800 EGLPLDE 806



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C+ G M++ V   QEM  + + P+   Y  +I GYSK G    A   L+EM    
Sbjct: 707 LIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 766

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P + TY+ L   + K    +E       M  +G   D ITY  L+ 
Sbjct: 767 IVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVH 814


>gi|357490321|ref|XP_003615448.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516783|gb|AES98406.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 310

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 147/364 (40%), Gaps = 84/364 (23%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM--KEMNLSPQ 208
           E  L  ++   ++++   +  PSL   + +   Y+K  KFNE +  L+ +  K++ L PQ
Sbjct: 6   ENALFHQSQSTWEQLLNSSYNPSLHFISKLFKSYTKQNKFNEIINILHSLSSKKLTLLPQ 65

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
                                                 Y+L I  F  AG +K ME T  
Sbjct: 66  -------------------------------------FYSLAISCFGAAGKVKLMEETID 88

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M++K   + S T   IL  Y  FG L++ME  Y R   SR  ++E+++R ++  Y+K  
Sbjct: 89  EMVSKGFQIDSKTGNEILLCYSVFGSLNEMENAYGRFKRSRFLIEENVIRAMSYGYLKKR 148

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTT 385
            F  L     D+   +GR  +   L  L      ++  + S+ RE   M     R +VTT
Sbjct: 149 KFYELGQFVRDVG--LGRRNVGNLLWNLLLLSYSANFKMKSLQREFVRMVELGFRPDVTT 206

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWK 442
            NI  LA+                 +R V  D+VT G + DA   RR G          +
Sbjct: 207 FNIRALAF-----------------SRMVVSDLVTYGCVVDAYLDRRHG----------R 239

Query: 443 RIGFLFKTVEIN------TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
            + F+   ++++      TDP V  V GKG F     E +   +    E   W+Y+ LI 
Sbjct: 240 NLEFVLNKMDVDDCPWLLTDPFVFEVLGKGDF-HLSSEAFMECKTQQHE---WSYRVLIK 295

Query: 497 LVIK 500
             +K
Sbjct: 296 KYLK 299


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 172/429 (40%), Gaps = 52/429 (12%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  P++  + + +  + +  ++F +  +I     +GL+++AV  F++++     P +  
Sbjct: 229 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM++    P + TY+ L   Y +   ++E   CL  M 
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 237 LDGCSPDHITYNLLIQEFACAG-------LLKRME--------GTYK---SMLTKRMHLR 278
             G  P+  TYN ++  +A  G       L  RM+         TY     ML K+   R
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS--R 406

Query: 279 SSTMVAILDAYMNFGMLDK---------------MEKFYKRLLNSRTPLKEDLVRKLAEV 323
            + M+ +L+     G                   ME +  R+LN       +L R     
Sbjct: 407 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNT 466

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-LLSHRG----IDSVVREMESAK 378
            I  Y           +   +  +    CL   +    +LS +G      S+V +M    
Sbjct: 467 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 526

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL----YDARRIGFDG 434
            + N  + +++L  Y K  +   +  +  E+    + P  V +  L    +  RR+  +G
Sbjct: 527 FKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL--EG 584

Query: 435 T-GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493
              A +  K  G+    V  N+   +LA+Y K        E++ S++         TY +
Sbjct: 585 VEKAFQEVKAQGYKPDLVIFNS---MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 494 LIDLVIKHN 502
           L+D+  K N
Sbjct: 642 LMDMYAKSN 650



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E   +AFQE++    KP L I+NS++  Y+K G +++A    + +K+  LSP   TY+ 
Sbjct: 582 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y K     E +  LK +K     PD ++YN +I  F   GL+K  +     M+   
Sbjct: 642 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 701

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           M     T   ++  Y +  M ++  +    +++      E   R++ + Y K
Sbjct: 702 MAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCK 753



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 143/342 (41%), Gaps = 26/342 (7%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F A++  L+  SRS   P              N      ++ +  + G+ +   R  
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTP--------------NRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M+   ++ S + YN++I  Y + G    A    +EM     +P   TY+ L+    + 
Sbjct: 450 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 509

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  M  +G  P+  +Y+LL+Q +A  G    +E   K +    +      +
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 569

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             ++ A      L+ +EK ++ +       K DLV    +  +Y KN ++S+  ++ D +
Sbjct: 570 RTLVIANFKCRRLEGVEKAFQEV--KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 627

Query: 341 ASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                  +L+    L+  +A        + ++++++S++V+ +V + N ++  + K    
Sbjct: 628 KQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLI 687

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           K  + +LSE+    + P +VT   L         G  +LEM+
Sbjct: 688 KEAQRILSEMIADGMAPCVVTYHTL-------VGGYASLEMF 722



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 8/231 (3%)

Query: 107 WAVIRFLKNSS-RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           W ++R L  ++ + R++  V   ++ ++    K  +  FNS  ++ M  + GL  +A   
Sbjct: 566 WVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS--MLAMYAKNGLYSKATEM 623

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F  ++   L P L  YNS++  Y+K  +  EA   L ++K   + P   +Y+ +I  + K
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +  E    L  M  DG +P  +TY+ L+  +A   +          M+   +     T
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELT 743

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
              ++D+Y      D+  +F   + ++     + L + + E  IK+  F R
Sbjct: 744 YRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL-QHMLEARIKDAQFGR 793



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 118/324 (36%), Gaps = 43/324 (13%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +++H  S+ G++  AL    E++   + P   TY+ ++  YG+  + +  I   L+ M
Sbjct: 183 YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 242

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-STMVAILDAYMNFGM 294
           +  G  PD  T + +I      GLL +    ++  L  R H+    T  A+L  +   G 
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFED-LKARGHVPCVVTYNALLQVFGKAGN 301

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
             +  +  K + +S          +LA  Y +   F                 E   CL 
Sbjct: 302 YTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE----------------EAAKCLD 345

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
            ++   LL                   N  T N ++ AY  +        L   +     
Sbjct: 346 TMTSKGLLP------------------NTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 387

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVYGKGHFLRY 471
            P++ T  +++         T  LEM +   R G     V  NT   +LAV GK     Y
Sbjct: 388 VPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNT---MLAVCGKRGMEDY 444

Query: 472 CEEVYSSLEPYSREKKRWTYQNLI 495
              V + ++    E  R TY  LI
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLI 468


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 165/392 (42%), Gaps = 36/392 (9%)

Query: 72  HEHQALNALIQ---RLNK---KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV 125
           H   +LN LI    RLN     VS   ++ +     T   F A+I  L N  + ++  ++
Sbjct: 121 HNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVEL 180

Query: 126 F-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           F +M +   +  +  +N+  II  LC+ G    AV  F++ME    KP +  YN+II   
Sbjct: 181 FNEMVRRGHEPNVISYNT--IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K    N+A+ FL+EM +  + P   TY+ ++  +      +E     K M      PD 
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDT 298

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +T  +L+      G++      +++M  K +    ST  A++D Y             +R
Sbjct: 299 VTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYC-----------LQR 347

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMF--------SRLDDLGDDLASRIGRT---ELVWCL 353
           L+N    + E ++R+     + +Y           R+D+    LA    +    + V   
Sbjct: 348 LMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYS 407

Query: 354 RLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            L+   C     +   ++ +EM S  +  N+ T +I+L  + K         LL  +  +
Sbjct: 408 TLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEK 467

Query: 413 HVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            ++P+IV   IL +   I     G LE+ K +
Sbjct: 468 KLEPNIVHHTILIEGMFIA----GKLEVAKEL 495



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 124/317 (39%), Gaps = 3/317 (0%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +FL + ++ +Q   V  +   ++   +  N ++   +I  LC    ++ AV    +M   
Sbjct: 93  KFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKL 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P+   +N++I+G    GK  EA+   NEM      P   +Y+ +I    K       
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               K M+ +GC PD +TYN +I       L+         ML + +     T   ++  
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           +   G L++  + +K ++          +  L +   K  M S    + + +  +     
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332

Query: 349 LVWCLRLLSHACLLSHRGIDSVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           +     L+   CL         V E M        V + NI++  + K +     + LL+
Sbjct: 333 ISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLA 392

Query: 408 ELPTRHVKPDIVTIGIL 424
           E+  + + PD VT   L
Sbjct: 393 EMYHKALNPDTVTYSTL 409



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 108/280 (38%), Gaps = 40/280 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C + LM EA + F+ M      P +  YN +I+G+ K  + +EA   L EM    L+P +
Sbjct: 344 CLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDT 403

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+Q   ++    E     K M   G  P+ +TY++L+  F   G L       KS
Sbjct: 404 VTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKS 463

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IK 326
           M  K++         +++     G L+  ++ + +L         D +R     Y   IK
Sbjct: 464 MQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLF-------ADGIRPTIRTYTVMIK 516

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
             +   L D   DL                               R+ME      N  + 
Sbjct: 517 GLLKEGLSDEAYDL------------------------------FRKMEDDGFLPNSCSY 546

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           N+++  +L+ +D      L+ E+  +    ++ T  +L D
Sbjct: 547 NVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   M+EA     EM   AL P    Y++++ G  + G+  EAL    EM    
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  L+  + K+   DE    LK M+     P+ + + +LI+    AG L+  +
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             +  +    +     T   ++   +  G+ D+    ++++
Sbjct: 494 ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKM 534


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 172/429 (40%), Gaps = 52/429 (12%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  P++  + + +  + +  ++F +  +I     +GL+++AV  F++++     P +  
Sbjct: 229 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+++  + K G + EAL  L EM++    P + TY+ L   Y +   ++E   CL  M 
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 237 LDGCSPDHITYNLLIQEFACAG-------LLKRME--------GTYK---SMLTKRMHLR 278
             G  P+  TYN ++  +A  G       L  RM+         TY     ML K+   R
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS--R 406

Query: 279 SSTMVAILDAYMNFGMLDK---------------MEKFYKRLLNSRTPLKEDLVRKLAEV 323
            + M+ +L+     G                   ME +  R+LN       +L R     
Sbjct: 407 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNT 466

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-LLSHRG----IDSVVREMESAK 378
            I  Y           +   +  +    CL   +    +LS +G      S+V +M    
Sbjct: 467 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 526

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL----YDARRIGFDG 434
            + N  + +++L  Y K  +   +  +  E+    + P  V +  L    +  RR+  +G
Sbjct: 527 FKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL--EG 584

Query: 435 T-GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493
              A +  K  G+    V  N+   +LA+Y K        E++ S++         TY +
Sbjct: 585 VEKAFQEVKAQGYKPDLVIFNS---MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 494 LIDLVIKHN 502
           L+D+  K N
Sbjct: 642 LMDMYAKSN 650



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E   +AFQE++    KP L I+NS++  Y+K G +++A    + +K+  LSP   TY+ 
Sbjct: 582 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  Y K     E +  LK +K     PD ++YN +I  F   GL+K  +     M+   
Sbjct: 642 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 701

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           M     T   ++  Y +  M ++  +    +++      E   R++ + Y K
Sbjct: 702 MAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCK 753



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 143/342 (41%), Gaps = 26/342 (7%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  F A++  L+  SRS   P              N      ++ +  + G+ +   R  
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTP--------------NRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M+   ++ S + YN++I  Y + G    A    +EM     +P   TY+ L+    + 
Sbjct: 450 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 509

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
             +      +  M  +G  P+  +Y+LL+Q +A  G    +E   K +    +      +
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 569

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             ++ A      L+ +EK ++ +       K DLV    +  +Y KN ++S+  ++ D +
Sbjct: 570 RTLVIANFKCRRLEGVEKAFQEV--KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 627

Query: 341 ASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                  +L+    L+  +A        + ++++++S++V+ +V + N ++  + K    
Sbjct: 628 KQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLI 687

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           K  + +LSE+    + P +VT   L         G  +LEM+
Sbjct: 688 KEAQRILSEMIADGMAPCVVTYHTL-------VGGYASLEMF 722



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 8/231 (3%)

Query: 107 WAVIRFLKNSS-RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           W ++R L  ++ + R++  V   ++ ++    K  +  FNS  ++ M  + GL  +A   
Sbjct: 566 WVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS--MLAMYAKNGLYSKATEM 623

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F  ++   L P L  YNS++  Y+K  +  EA   L ++K   + P   +Y+ +I  + K
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +  E    L  M  DG +P  +TY+ L+  +A   +          M+   +     T
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELT 743

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
              ++D+Y      D+  +F   + ++     + L + + E  IK+  F R
Sbjct: 744 YRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL-QHMLEARIKDAQFGR 793



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 118/324 (36%), Gaps = 43/324 (13%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +++H  S+ G++  AL    E++   + P   TY+ ++  YG+  + +  I   L+ M
Sbjct: 183 YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 242

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-STMVAILDAYMNFGM 294
           +  G  PD  T + +I      GLL +    ++  L  R H+    T  A+L  +   G 
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFED-LKARGHVPCVVTYNALLQVFGKAGN 301

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
             +  +  K + +S          +LA  Y +   F                 E   CL 
Sbjct: 302 YTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE----------------EAAKCLD 345

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
            ++   LL                   N  T N ++ AY  +        L   +     
Sbjct: 346 TMTSKGLLP------------------NTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 387

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVYGKGHFLRY 471
            P++ T  +++         T  LEM +   R G     V  NT   +LAV GK     Y
Sbjct: 388 VPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNT---MLAVCGKRGMEDY 444

Query: 472 CEEVYSSLEPYSREKKRWTYQNLI 495
              V + ++    E  R TY  LI
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLI 468


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 8/274 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     +GL  EA R F +++ F  KP    YN+++  YS+ G    AL     M+   
Sbjct: 250 LMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNG 309

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + +++ LI AYG+  +Y++ +   K M+  G SP+  +  LL+  +A AG ++  E
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAE 369

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDL--VRK 319
               +M  +R   +  T++  ++++AY   G  + ME    +++ S +   K D+     
Sbjct: 370 ELVSAM--ERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNT 427

Query: 320 LAEVYIKNYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           L +VY +     R ++L   LA  ++      W   +  +A    +R   S++++M  + 
Sbjct: 428 LIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESG 487

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            R +  TA ++  A    +  + +  L+  L  R
Sbjct: 488 CRADAVTARVLFSACRSPEQVEQVTQLMESLQGR 521



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 139/345 (40%), Gaps = 36/345 (10%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+A + F  M+     P+ E +  +I+GY   G F +A     +M++   SP     + 
Sbjct: 120 IEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNT 179

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
            +      K Y   +   + ++   C P+  TYN +I  +  AG   + E  Y+SM    
Sbjct: 180 FLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAM 239

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T  A+++A+   G+  + E+++ +L       K D           +Y ++ L 
Sbjct: 240 CPPNICTFTALMNAFARQGLYREAERYFDKL--QEFDYKPD-----------HYAYNALM 286

Query: 335 DLGDDLASRIGRTELVWCLR-------LLSHACLLSHRG-------IDSVVREMESAKVR 380
           +      S  G  E+   ++        +SH  L++  G        + + + M+SA   
Sbjct: 287 EAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFS 346

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            N+ +  ++L AY +    +    L+S +     KPD +    L +A   G  G    +M
Sbjct: 347 PNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINA--YGVSGRHE-DM 403

Query: 441 WKRIGFLFKTVEINTDP------LVLAVYGKGHFLRYCEEVYSSL 479
              +  + K+    T P       ++ VY +  F+   EE++  L
Sbjct: 404 EALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGL 448


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 125/282 (44%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G + EA+R  +EME   L P +  YN++I+G  + G   E    + EM+   
Sbjct: 308 MISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRG 367

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S TY+ +++ + K    DE+D  ++ M+  GC PD +TYN LI      G +    
Sbjct: 368 MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAF 427

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M  K + +   T+  +L A      LD+              + E     L   Y
Sbjct: 428 RLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGY 487

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL--SHRGIDSVVREMESAKVRWN 382
            K+   S+   L D++  +     ++    +++  C +  +++ ID +   +ES  V   
Sbjct: 488 FKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDE 547

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + T N I+  Y +    +      +++  ++ KPD+VT   L
Sbjct: 548 I-TYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTL 588



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 19/319 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA    + M   ++ P    YN +I G+ K G+  EA+    EM+ + LSP  
Sbjct: 278 CRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDV 337

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI    ++   +E    ++ M+  G  P+ +TYN++++ F   G +  ++ T + 
Sbjct: 338 VTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRK 397

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M          T   ++  +   G +D+  +    +   R  LK D V  L  +      
Sbjct: 398 MEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEM--GRKGLKMDDV-TLNTMLRALCR 454

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVR---EMESAKVRWN 382
             +LD+  D L S   R   V     +S+  L+     H      +R   EM+  ++  +
Sbjct: 455 ERKLDEAHDLLCSARRRGYFV---DEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPS 511

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           + T N ++    +M         L EL    + PD +T    Y+    G+   G +E  K
Sbjct: 512 IITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEIT----YNTIIHGYCQEGQVE--K 565

Query: 443 RIGFLFKTVEINTDPLVLA 461
              F  K VE N  P V+ 
Sbjct: 566 AFQFHNKMVEKNFKPDVVT 584



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 2/151 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A++RF  + S         D  K   K   N FN   +I   C E    EA+R   +M  
Sbjct: 168 ALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNI--LIHGSCMENRFGEAIRVLGKMRD 225

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           +   P    YN+I+ G  K G+ NEA   L +MK   L P   T++ L+    +     E
Sbjct: 226 YGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKE 285

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               +++M  +   PD  TYN++I  F   G
Sbjct: 286 AANVIELMSQNSVVPDAWTYNVMISGFCKQG 316



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 6/199 (3%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           +I + K+   S    Q   +W  +++  I  +      +I  LC+ G   +A+    E+ 
Sbjct: 484 IIGYFKHEKAS----QALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELL 539

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              L P    YN+IIHGY + G+  +A  F N+M E N  P   T + L+    K  M +
Sbjct: 540 ESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLE 599

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           +           G   D ++YN +I                + M  K++     T  AIL
Sbjct: 600 KALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAIL 659

Query: 287 DAYMNFGMLDKMEKFYKRL 305
               + G +   E+F  ++
Sbjct: 660 GGLTDAGRMKDAEEFISKI 678



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 124 QVFDMWKNIEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           ++F+ W  I K + ++  +   II  LC+E    EA    +EME   L P    YN+I+ 
Sbjct: 603 KLFNTW--ISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILG 660

Query: 183 GYSKIGKFNEALLFLNEMKE 202
           G +  G+  +A  F++++ E
Sbjct: 661 GLTDAGRMKDAEEFISKIAE 680


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+EG +EEA   F +M    L P+   YN++I GY   G    A  + +EM +  
Sbjct: 249 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 308

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ L+ A        E D  +K M+  G  PD ITYN+LI  ++  G  KR  
Sbjct: 309 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAF 368

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  ML+K +     T  +++        + + +  ++++L+              +V 
Sbjct: 369 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS---------PDVI 419

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           + N M         D     G  E  + L                 ++EM+   V  +  
Sbjct: 420 MFNAMI--------DGHCANGNVERAFML-----------------LKEMDRKSVPPDEV 454

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T N ++    +    +  R+LL E+  R +KPD ++   L
Sbjct: 455 TFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTL 494



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 9/282 (3%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG +++A      MEG   KP++  YN+IIHGYS  G    A   L+ M+   + P S T
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 245

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LI    K    +E       M   G  P+ +TYN LI  +   G L+R       M+
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            K +    ST   ++ A    G + + +   K +              L   Y +     
Sbjct: 306 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 365

Query: 332 RLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTA 386
           R  DL +++ S+ I  T + +     S   +LS R      D +  ++    V  +V   
Sbjct: 366 RAFDLHNEMLSKGIEPTHVTYT----SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 421

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
           N ++  +    + +   +LL E+  + V PD VT   L   R
Sbjct: 422 NAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 463



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 117 SRSRQIPQVFDM-----WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           SR     + FD+      K IE + +       +I +L     M+EA   F+++    + 
Sbjct: 359 SRCGNAKRAFDLHNEMLSKGIEPTHVT---YTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P + ++N++I G+   G    A + L EM   ++ P   T++ L+Q   +    +E  M 
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 475

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           L  MK  G  PDHI+YN LI  +   G +K
Sbjct: 476 LDEMKXRGIKPDHISYNTLISGYGRRGDIK 505



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            + + F + K +++  +  +E     ++   C EG +EEA     EM+   +KP    YN
Sbjct: 433 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYN 492

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GY + G   +A    +EM  +  +P   TY+ LI+   K +  D  +  LK M   
Sbjct: 493 TLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 552

Query: 239 GCSPDHITYNLLIQ 252
           G SPD  TY  LI+
Sbjct: 553 GISPDDSTYLSLIE 566



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 17/217 (7%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + ++I  +    R  +   +FD  K +E   + N      +I   C +G +E A     E
Sbjct: 246 YGSLISGMCKEGRLEEASGLFD--KMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 303

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK--- 221
           M    + PS+  YN ++H     G+  EA   + EM++  + P + TY+ LI  Y +   
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGN 363

Query: 222 ----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
               + +++E       M   G  P H+TY  LI   +    +K  +  ++ +L + +  
Sbjct: 364 AKRAFDLHNE-------MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSP 416

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                 A++D +   G +++     K +     P  E
Sbjct: 417 DVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDE 453


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 162/380 (42%), Gaps = 49/380 (12%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEE 157
           W K    AV+  L  + R  +      ++  + K    E   Q   K++ ML +    E+
Sbjct: 91  WPK----AVLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQ 146

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLI 216
           A   F+ M    L+P+L++Y +++  Y   G+ ++A   + +MK + +  P   TY  LI
Sbjct: 147 ASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILI 206

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           +       +D I+     M   G     +TYN +I  +  A + + ME +   M+     
Sbjct: 207 KCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTC 266

Query: 277 LRS-STMVAILDAYMNFGMLDKMEKFYK--RLLNSRTPLK--EDLVRKLAEVYIKNYMFS 331
           L    T+ + + AY N G ++KMEK+Y   +L+  R  +K    L+R   +  +   M S
Sbjct: 267 LPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVS 326

Query: 332 RLD--------------DLGDDLASRIGRTE------------------LVWCLRLLSHA 359
            ++              ++  ++  R+G  E                  + +C  + +++
Sbjct: 327 VMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYS 386

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                + +DS++R++E++ V  +    N +L AY +  D + +  L   +  R  KPD +
Sbjct: 387 KAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNI 446

Query: 420 TIGILYDARRIGFDGTGALE 439
           T   +  A    ++  G +E
Sbjct: 447 TFATMIQA----YNAQGMIE 462



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 72/156 (46%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + E+ V   + M+     P++  +N +I  + ++G   +   F  +MK   + P S TY 
Sbjct: 320 MYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYC 379

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L+ AY K     ++D  L+ ++    + D   +N ++  +  AG ++RM   +  M  +
Sbjct: 380 SLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKER 439

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           +    + T   ++ AY   GM++  +     ++ ++
Sbjct: 440 KCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTK 475



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 66/130 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M    G +E+    F +M+   +KP+   Y S++  YSK G   +    L +++  +
Sbjct: 346 VIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSD 405

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++  +  ++ ++ AYG+    + +     +MK   C PD+IT+  +IQ +   G+++  +
Sbjct: 406 VTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQ 465

Query: 265 GTYKSMLTKR 274
               +M+T +
Sbjct: 466 NLEVNMITTK 475


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  +EA   F  M     KP+L  Y+ ++HGY+  G F + L   N M+   +   
Sbjct: 342 LCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVAD 401

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              ++ +I AYGK  M DE  +    M+  G  PD  TY ++I  F+  G L      + 
Sbjct: 402 QRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFN 461

Query: 269 SMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVY 324
            M+   M L+   +V  +++  +   G L K ++    +++   P + ++V    +    
Sbjct: 462 QMIA--MGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIP-RPNIVFFNSIINSL 518

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
            K        D+ D +     R +++    L+    L+        V+  M SA +  +V
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY-----DARRIG 431
            + N ++  Y +        +L  E+ ++ VKP  +T GI+      D R +G
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVG 631



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 45/294 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           ++  LCE+   + A+     M  +     P++  YN++IHG  + G+ ++A    +EM +
Sbjct: 196 VVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQ 255

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             + P   TY  +I A  K +  D+ ++ L+ M  +G  P+ +TYN +I  ++ +G  K 
Sbjct: 256 QGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKE 315

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
             G ++ M ++ +     T  + + +    G   +  +F+                    
Sbjct: 316 TAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF-------------------- 355

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL----SHACLLSHRGIDSVVREMESAK 378
                          D +A++  +  LV    LL    +  C +    + ++   ME   
Sbjct: 356 ---------------DSMAAKGHKPNLVTYSVLLHGYATEGCFVD---MLNLFNSMEGNG 397

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
           +  +    NI++ AY K        ++ +++  + V PD  T GI+  A  R+G
Sbjct: 398 IVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMG 451



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M + I +  I  FNS  II  LC+EG + EA   F  +     +P +  +NS+I GY  +
Sbjct: 499 MSRGIPRPNIVFFNS--IINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLV 556

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK  +A   L+ M    + P   +Y+ LI  Y +    D+  +    M   G  P  ITY
Sbjct: 557 GKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITY 616

Query: 248 NLLIQ 252
            +++ 
Sbjct: 617 GIILH 621



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 132/314 (42%), Gaps = 31/314 (9%)

Query: 137 INEFNSQKIIGMLCEE-------------GLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +N FNS +  G++ ++             G+M+E +  F +M+   + P    Y  +I  
Sbjct: 387 LNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAA 446

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSP 242
           +S++G+  +A+   N+M  M L P+   Y  LIQ +  +  +    ++  +MM      P
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP 506

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           + + +N +I      G +      +  ++         T  +++D Y   G++ K+EK +
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGY---GLVGKIEKAF 563

Query: 303 KRL-LNSRTPLKEDLV--RKLAEVYIKNYMFSRLDD----LGDDLASRIGRTELVWCLRL 355
             L       ++ D+V    L + Y +N    R+DD     G+ L+  +  T + + + L
Sbjct: 564 GVLDAMISAGIEPDVVSYNTLIDGYCRN---GRIDDGLILFGEMLSKGVKPTTITYGIIL 620

Query: 356 LSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
             H      R  G   +  EM  +    +++T  IIL    +         +  +L   +
Sbjct: 621 --HGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMN 678

Query: 414 VKPDIVTIGILYDA 427
           VK +I  I  + DA
Sbjct: 679 VKFNIAIINTMIDA 692



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 129/349 (36%), Gaps = 70/349 (20%)

Query: 45  ISCCCLSSAPSLDY-------HSTKHTTLLVES------YHEHQA---LNALIQRLNKKV 88
           + CCC +  P++ +        +     ++V S      YH  ++   +N L+ R+ +  
Sbjct: 126 MDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELG 185

Query: 89  SCPLQILQHDGDWTKDHFWAVIRFLKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIG 147
             P  I           +  V++ L   SRS R +  +  M K       N      +I 
Sbjct: 186 VEPDTI----------SYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIH 235

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            L  EG + +A   F EM    + P +  Y SII    K    ++A L L +M      P
Sbjct: 236 GLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQP 295

Query: 208 QSDTYDGLIQAY---GKYK----MYDEI-----------------DMC-----------L 232
              TY+ +I  Y   G++K    M+ E+                  +C            
Sbjct: 296 NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF 355

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M   G  P+ +TY++L+  +A  G    M   + SM    +         ++DAY   
Sbjct: 356 DSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKR 415

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYMFSRLDDLGDDL 340
           GM+D+    +       T ++E  V   A  Y I    FSR+  L D +
Sbjct: 416 GMMDETMLIF-------TQMQEQGVIPDACTYGIVIAAFSRMGRLADAM 457



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G LC     +EA+  F+++    +K ++ I N++I    K+ K  EA    + +    
Sbjct: 654 ILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATG 713

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P + TY  +I+   K    +E D    +M+  GC+P     N +I+     G + +  
Sbjct: 714 LVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAG 773

Query: 265 GTYKSMLTKRMHLRSSTM 282
                +  KR+ L +ST+
Sbjct: 774 NYMFKVDGKRISLEASTV 791


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 133/311 (42%), Gaps = 37/311 (11%)

Query: 124 QVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNS 179
           Q   +++N+E SR+N   F    +I  LC+ G +E+A    +EM   G    P +  YN+
Sbjct: 115 QAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNT 174

Query: 180 IIH-GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +I+ G  K G   EAL  L+ MK    +P   TY+ +I A        E    LK M   
Sbjct: 175 LINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS-- 232

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            CSPD +T+N L+  F  AG+L R     + M  + +     T   +++     G +   
Sbjct: 233 -CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV- 290

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF--SRLDDLGDDLASRIGRTELVWCLRLL 356
             FY         L E++VR   + YI + +   S +D L      + G  E        
Sbjct: 291 -AFY---------LLEEIVR---QGYIPDVIAYTSLVDGL-----CKSGEIE-------E 325

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           +H  L+       ++ EM S  +   + T NI+L   +K         L+S+L  R   P
Sbjct: 326 AHK-LVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 384

Query: 417 DIVTIGILYDA 427
           D+VT   L D 
Sbjct: 385 DVVTYNTLIDG 395



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 2/180 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            +K+ S S+ +  + D+        +  +N+  +I  LC+   + EA     EM      
Sbjct: 361 LIKDGSISKAVSLISDLVARGYVPDVVTYNT--LIDGLCKANRVREACDLADEMASLGCF 418

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+     S++ G  ++G+ ++A   + EM     +P    Y  LI    K    D+  + 
Sbjct: 419 PNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVV 478

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L  M+  G + D   Y  LI      G +      Y  M+ +      ST   + +A M+
Sbjct: 479 LDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMS 538



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           ++ SSR     Q FD W   +    ++ +S   ++ +L + G      + ++++      
Sbjct: 1   MRRSSRPDLAIQFFD-WAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCS 59

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+L  +  +I G  K G+   AL FL  + E +++P    ++ LI    K    D+    
Sbjct: 60  PNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKL 119

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M+    +PD  TYN +I     +G L++     + M+  R   +S+  +   +  +N
Sbjct: 120 FENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMI--RRGGKSAPDIVTYNTLIN 177

Query: 292 FGM 294
            G+
Sbjct: 178 AGI 180



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEG---------FALKPSLEIYNSIIHGYSKIGKFNEAL 194
            ++  LC+ G +EEA +  +EM             + P L  YN ++ G  K G  ++A+
Sbjct: 312 SLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 371

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             ++++      P   TY+ LI    K  ++ +  D+  +M  L GC P+ +T   ++
Sbjct: 372 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASL-GCFPNDVTLGSVV 428


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 8/274 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     +GL  EA R F +++ F  KP    YN+++  YS+ G    AL     M+   
Sbjct: 250 LMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNG 309

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + +++ LI AYG+  +Y++ +   K M+  G SP+  +  LL+  +A AG ++  E
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAE 369

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDL--VRK 319
               +M  +R   +  T++  A+++AY   G  + ME    +++ S +   K D+     
Sbjct: 370 ELVSAM--ERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNT 427

Query: 320 LAEVYIKNYMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           L +VY +     + ++L   LA  ++      W   +  +A    +R   S++++M  + 
Sbjct: 428 LIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESG 487

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            R +  TA ++  A    +  + +  L+  L  R
Sbjct: 488 CRADAVTARVLFSACRSPEQVEQVTQLMESLQGR 521



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 139/345 (40%), Gaps = 36/345 (10%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+A + F  M+     P+ E +  +I+GY   G F +A     +M++   SP     + 
Sbjct: 120 IEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNT 179

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
            +      K Y   +   + ++   C P+  TYN +I  +  AG   + E  Y+SM    
Sbjct: 180 FLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAM 239

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T  A+++A+   G+  + E+++ +L       K D           +Y ++ L 
Sbjct: 240 CPPNICTFTALMNAFARQGLYREAERYFDKL--QEFDYKPD-----------HYAYNALM 286

Query: 335 DLGDDLASRIGRTELVWCLR-------LLSHACLLSHRG-------IDSVVREMESAKVR 380
           +      S  G  E+   ++        +SH  L++  G        + + + M+SA   
Sbjct: 287 EAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFS 346

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            N+ +  ++L AY +    +    L+S +     KPD +    L +A   G  G    +M
Sbjct: 347 PNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINA--YGVSGRHE-DM 403

Query: 441 WKRIGFLFKTVEINTDP------LVLAVYGKGHFLRYCEEVYSSL 479
              +  + K+    T P       ++ VY +  F+   EE++  L
Sbjct: 404 EALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGL 448


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 166/397 (41%), Gaps = 19/397 (4%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           +I +  D++  + K  +  F +  ++  LC EG + EAV     M    L+P+   Y +I
Sbjct: 166 RISEALDLFHQMCKPNVVTFTT--LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTI 223

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + G  K+G    AL  L +M+E++ + P    Y+ +I    K   + +       M+   
Sbjct: 224 VDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKE 283

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             PD +TYN +I  F  +G     E   + ML ++++    T  A+++A++  G   + E
Sbjct: 284 IFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAE 343

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y  +L             + + + K       + +     ++    +++    L++  
Sbjct: 344 ELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGY 403

Query: 360 CLLSHRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           C  + R  D +  + EM  A +  N  T   ++  + ++ D    + LL E+ +  V P+
Sbjct: 404 C-RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPN 462

Query: 418 IVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGK 465
           +VT   L D          ALEM+K +            F  VE +      L+  +  +
Sbjct: 463 VVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINE 522

Query: 466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           G FL   EE+Y  +          TY ++ID + K +
Sbjct: 523 GKFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 11/182 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-----------ALKPSLEIYNSIIHGYSK 186
           N      ++  LC+ G +++A+  F+ M+              ++P ++ YN +I G   
Sbjct: 462 NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLIN 521

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            GKF EA     EM    + P + TY  +I    K    DE       M     SPD +T
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVT 581

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +N LI  +  AG++      +  M  + +   + T + ++  +     +D     ++ ++
Sbjct: 582 FNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMI 641

Query: 307 NS 308
           +S
Sbjct: 642 SS 643



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  LC++  ++EA + F  M   +  P +  +N++I GY K G  ++ L    EM +
Sbjct: 548 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQ 607

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHIT 246
             +   + TY  LI  YG ++  D ID  L +   M   G  PD IT
Sbjct: 608 RGIVADAITYITLI--YG-FRKVDNIDGALDIFQEMISSGVYPDTIT 651


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+  ++ +  D++  +E+  I  N      +I  LC+   M++A R  ++M G  ++P+ 
Sbjct: 164 SKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNN 223

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN +IHGYS  G + E++    EM    L P     +  + A  K+    E       
Sbjct: 224 MTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDS 283

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M L G  PD I+Y  L+  +A AG +  M+  +  M+ + +         +++AY   GM
Sbjct: 284 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 343

Query: 295 LDK 297
           +DK
Sbjct: 344 MDK 346



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I      G+ +E+VR F+EM    L P +   NS +    K G+  EA  
Sbjct: 220 RPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARD 279

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + M      P   +Y  L+  Y        +D    +M  +G  PD   +N LI  +A
Sbjct: 280 IFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYA 339

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKE 314
             G++ +    ++ M  + ++    T   ++ A+   G L D MEKF   ++++  P   
Sbjct: 340 RLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF-NHMIDTGVPPDT 398

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH--RGIDSVV 371
            +   L +         +  +L  D+ S+ I    + +   ++++ C       G D V 
Sbjct: 399 AVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVD 458

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             + + + R N+ T N ++  Y  + + K    LL  + +  V+PDI T   L D 
Sbjct: 459 LIIHTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 513



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P +  YN++I G+SK G+ ++A     +M+E  + P   TY  LI    K K  D+ 
Sbjct: 148 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 207

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           +  L+ M   G  P+++TYN LI  ++ +G+ K     +K M
Sbjct: 208 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM 249



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + K I    I  F S  II  LC+EG + E       +     +P+L  +NS++ GY  +
Sbjct: 425 LSKGIPPPCIKFFTS--IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLV 482

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA+  L+ M+ + + P   TY+ L+  Y K+   D+     + M     +   ++Y
Sbjct: 483 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 542

Query: 248 NLLIQ 252
           N+++ 
Sbjct: 543 NIILH 547



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/274 (18%), Positives = 107/274 (39%), Gaps = 4/274 (1%)

Query: 158 AVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           AV  F+ M+  A     P++  YN +I+ Y +  + +  L     +    L P   +Y+ 
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI  + K    D+       M+  G  P+ +TY+ LI        + + E   + M+   
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   + T   ++  Y   GM  +  + +K + +S                 K+       
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278

Query: 335 DLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           D+ D +  +  + +++    LL  +A      G+D++   M    V  +    N ++ AY
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++       ++  ++  + V PDI+T   +  A
Sbjct: 339 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 372



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F ++I  L    R  +   V D+  +  ++  +  FNS  ++   C  G M+EAV     
Sbjct: 437 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNS--LVDGYCLVGNMKEAVGLLDS 494

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA 218
           ME   ++P +  YN+++ GY K G+ ++AL    +M    ++  S +Y+    GL QA
Sbjct: 495 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQA 552



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC     +EA    +++    +K  +  +N +I    K+G+  EA      +    
Sbjct: 580 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 639

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  +I    K + +++ D     M+   C+PD    N +I+     G + +  
Sbjct: 640 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAK-A 698

Query: 265 GTYKSMLTKRMHLRSSTMVAIL 286
           G Y S + K+  L  +T  ++L
Sbjct: 699 GNYLSKIDKKGILPEATTTSLL 720


>gi|326532582|dbj|BAK05220.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 697

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 131/294 (44%), Gaps = 20/294 (6%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           S  +I + C+EG+ +EA+    EME   +  +  IYN+I++ Y K  +  EA     EMK
Sbjct: 346 SASLIKIFCDEGMKKEALIFQSEMEKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMK 405

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           E  L P   TY+ L+ AY +    + ++  L  M   G  P+  +YN LI  +   G  K
Sbjct: 406 EKGLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLGFQPNARSYNCLISAY---GRQK 462

Query: 262 RM----EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           +M    E  +  M    +   SS+  +++ AY   G  +K    Y  L   R  LK  L 
Sbjct: 463 KMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKAHIAY--LDMKREGLKPSLE 520

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRT-ELVWCLRLLSHACL--LSHRGIDSVVREM 374
              A + I    F R  +    + +    T E V C R+  H  L  L+  G+    R++
Sbjct: 521 TYTALLDI----FRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDV 576

Query: 375 --ESAKVRWNVT--TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             E  K+    T  T NI++ AY K      L  LL E+ T  +KPD VT   L
Sbjct: 577 ICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTL 630



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ + C+   +EEA   F EM+   LKP+   YN ++  YS+  +       L EM ++ 
Sbjct: 384 IMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLG 443

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P + +Y+ LI AYG+ K M ++ +     MK  G      +Y  LI  +A +G  ++ 
Sbjct: 444 FQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKA 503

Query: 264 EGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              Y  M  KR  L+ S  T  A+LD +   G  +K+ + +K + + +          + 
Sbjct: 504 HIAYLDM--KREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVL 561

Query: 322 EVYIKNYMFSRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +   K+ +F +  D+  +   +IG   T + + + + ++A    H  +  +++EM + ++
Sbjct: 562 DGLAKHGLFVQARDVICEFG-KIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLEL 620

Query: 380 RWNVTTANIILLAYLKMKDF 399
           + +  T + ++ AY +++DF
Sbjct: 621 KPDSVTYSTLIYAYARVRDF 640



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+    ++ + WK++  EK          ++  L + GL  +A     E     L P+  
Sbjct: 531 RAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAM 590

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y+K G+  +    L EM  + L P S TY  LI AY + + +       K M
Sbjct: 591 TYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQM 650

Query: 236 KLDGCSPDHITYNLLI 251
             +G  PD  +Y  L+
Sbjct: 651 VRNGQVPDAKSYRKLL 666



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A  A+ +M+   LKPSLE Y +++  + + G   + +     M +  +     T+
Sbjct: 498 GQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTF 557

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             ++    K+ ++ +  D+  +  K+ G  P  +TYN+L+  +A  G   ++    K M 
Sbjct: 558 HMVLDGLAKHGLFVQARDVICEFGKI-GLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMS 616

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
           T  +   S T   ++ AY       +   ++K+++ N + P
Sbjct: 617 TLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVP 657


>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
 gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
 gi|224028857|gb|ACN33504.1| unknown [Zea mays]
 gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
          Length = 571

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K+I +L   G    A + F EM     +P+ E+Y ++I  
Sbjct: 202 QVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGA 261

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  +EAL  LN+MK   L  P   TY  +I+A      +D  D   K M     SP
Sbjct: 262 YCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISP 321

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME     ML +        TM  IL  + N G ++ ME++
Sbjct: 322 NTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERW 381

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +   +  L   Y K  M+ ++                            
Sbjct: 382 YEKFRGYGVEPETRTLNILIGAYGKRRMYDKM---------------------------- 413

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+ +  D  ++    +++ +  ++PD  T 
Sbjct: 414 ------SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTF 467

Query: 422 GILYDARRIGFDGTG 436
             L D    GF   G
Sbjct: 468 CCLID----GFSRAG 478



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 23/251 (9%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQ 124
           T L+ +Y     L+  +Q LN   S PL   Q D  +T   +  +I+   +++R      
Sbjct: 256 TALIGAYCRSGLLDEALQLLNDMKSSPL--CQPD-VYT---YSTIIKACIDAAR------ 303

Query: 125 VFD----MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY 177
            FD    M+K++ +  I  N      ++    + G +++  R   +M +  + KP +   
Sbjct: 304 -FDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTM 362

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++   ++ M+ 
Sbjct: 363 NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 422

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                   TYN +I+ FA AG    ME  +  M ++ M   + T   ++D +   G   K
Sbjct: 423 LAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHK 482

Query: 298 ---MEKFYKRL 305
              M K  +RL
Sbjct: 483 VVGMVKLAERL 493



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   R +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 365 ILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLA 424

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ AG   ++ 
Sbjct: 425 FPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHKVV 484

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ +  +T    A+L A      L +ME+ ++R+ +++          L E
Sbjct: 485 GMVK--LAERLDVPVNTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVE 542

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 543 AYRKEGMTDKI 553


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 11/201 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           F+    +S ++P+  ++ KN++    K  +  FN+  +I  LC+ G ++EA +   EME 
Sbjct: 60  FVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNT--LIAGLCKAGRLDEAQQVLDEMER 117

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
                +L  YN++I+G S  G+  EA+L    M+ M  +P + TY+ +I  + K    D 
Sbjct: 118 SGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHGFCKSGEIDR 174

Query: 228 IDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV-AI 285
               L+ MK   GCSPD  TY++LI     +  L++ +   + M+ ++    S      +
Sbjct: 175 AYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTL 234

Query: 286 LDAYMNFGMLDKMEKFYKRLL 306
           +D Y     LD+  +    +L
Sbjct: 235 VDGYCKAQDLDRARELLSSML 255



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 127/337 (37%), Gaps = 45/337 (13%)

Query: 150 CEEGLMEEAVRAFQEME---GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           C  G ++ A+   +EME   G A  PS+  YN  +H   K GK  EA+  +  MK+    
Sbjct: 29  CLAGELQAAMDLLREMEQQPGMAPTPSM--YNFFVHALCKSGKVPEAMEVVKNMKDGACK 86

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P   T++ LI    K    DE    L  M+  G + + +TYN LI   + AG        
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            + M T      + T  AI+  +   G +D+   F + +            ++ A     
Sbjct: 147 MQGMTTTP---DTQTYNAIIHGFCKSGEIDRAYGFLEEM------------KQRAGCSPD 191

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK-VRWNVT 384
            + +S                       L++  C  S+ R  D +++EM   K    +V 
Sbjct: 192 TFTYS----------------------ILINGLCKSSNLRKADELLQEMIGRKDCCASVV 229

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALEMWKR 443
             N ++  Y K +D    R LLS +      PD+VT   + D   R G    G   + K 
Sbjct: 230 AFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKM 289

Query: 444 IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
           +    K   +    LV  +   G  +  C  V   LE
Sbjct: 290 VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 1/160 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLF 196
           + F    +I  LC+   + +A    QEM G      S+  +N+++ GY K    + A   
Sbjct: 191 DTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+ M E   +P   TY  +I    +    D+    L+ M   GC PD +TY +L+     
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           AG +       K ML       + T   + D       LD
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLD 350



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC  G +++     ++M     KP +  Y  ++ G  K GK  EA   +  M E  
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEIDM 230
            +P + TY    DGL +        D++DM
Sbjct: 329 CTPNAVTYSLVFDGLCK-------IDKLDM 351


>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
          Length = 580

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 125/316 (39%), Gaps = 42/316 (13%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K+I +L   G    A + F EM     +P+ E+Y ++I  
Sbjct: 211 QVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGA 270

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  +EAL  LN+MK   L  P   TY  +I+A      +D  D   K M     SP
Sbjct: 271 YCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISP 330

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEK 300
           + +T N+++  +  AG L  ME     ML   +  +    TM  IL  + N G ++ ME+
Sbjct: 331 NTVTQNIVLSGYGKAGRLDDMERVLSDMLDS-VSCKPDVWTMNIILSLFGNRGEVELMER 389

Query: 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
           +Y++        +   +  L   Y K  M+ ++                           
Sbjct: 390 WYEKFRGYGVEPETRTLNILIGAYGKRRMYDKM--------------------------- 422

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                   +V+  M      W   T N ++ A+ +  D  ++    +++ +  ++PD  T
Sbjct: 423 -------SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKT 475

Query: 421 IGILYDARRIGFDGTG 436
              L D    GF   G
Sbjct: 476 FCCLID----GFSRAG 487



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   R +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 374 ILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLA 433

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ AG   ++ 
Sbjct: 434 FPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHKVV 493

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ + ++T    A+L A      L +ME+ ++R+ +++          L E
Sbjct: 494 GMVK--LAERLDVPANTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVE 551

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 552 AYRKEGMTDKI 562



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 24/259 (9%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQ 124
           T L+ +Y     L+  +Q LN   S PL   Q D  +T   +  +I+   +++R      
Sbjct: 265 TALIGAYCRSGLLDEALQLLNDMKSSPL--CQPD-VYT---YSTIIKACVDAAR------ 312

Query: 125 VFD----MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY 177
            FD    M+K++ +  I  N      ++    + G +++  R   +M +  + KP +   
Sbjct: 313 -FDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTM 371

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++   ++ M+ 
Sbjct: 372 NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 431

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                   TYN +I+ FA AG    ME  +  M ++ M   + T   ++D +   G   K
Sbjct: 432 LAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHK 491

Query: 298 ---MEKFYKRL-LNSRTPL 312
              M K  +RL + + TP 
Sbjct: 492 VVGMVKLAERLDVPANTPF 510


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 17/312 (5%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGML 149
            + L+ D  ++ D  +A    +   SR+R+  +   +++ +  E  R N      ++ + 
Sbjct: 200 FESLKQDESYSLD-VYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLY 258

Query: 150 CEEGLMEEAVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            + G   + +++ FQEM+   + P    YN++I    +     EAL    EMKE    P 
Sbjct: 259 GKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 318

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ L+  YGK  M+ E    L  M+  G SP+ +TYN LI  +A AGL        K
Sbjct: 319 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 378

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           S+L+K +     T   ++ A+      ++ E++ K L       K +    +    I   
Sbjct: 379 SLLSKGLCPDEFTYCTLISAF------NRAERYEKALETFTEMRKTNCTPNIVTYNILID 432

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVVREMESAKVRW 381
           ++ R++ L D +       E      L++   LL   G       + +V REM+ A    
Sbjct: 433 IYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 492

Query: 382 NVTTANIILLAY 393
            V T NI++  Y
Sbjct: 493 GVDTFNILIECY 504



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 181/456 (39%), Gaps = 30/456 (6%)

Query: 57  DYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNS 116
           DY      T  +++ H  +AL  L Q + +   CP ++           + A++      
Sbjct: 284 DYTYNTMITACIQNSHCQEALR-LFQEMKEAGCCPNRVT----------YNALLDVYGKG 332

Query: 117 SRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
              ++  ++  +M        I  +N  ++I      GL +EA    + +    L P   
Sbjct: 333 GMHKEASELLVEMEAAGISPNIVTYN--ELIAAYARAGLCDEAAALKKSLLSKGLCPDEF 390

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y ++I  +++  ++ +AL    EM++ N +P   TY+ LI  YG+ +  D++    K M
Sbjct: 391 TYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFM 450

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +   C+PD +T+N L++ F   G+L  +   ++ M          T   +++ Y   G +
Sbjct: 451 QEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYV 510

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           D     YK LL +           L     +   + + + +  ++A   G      C   
Sbjct: 511 DYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMA-EAGLQLSDACHAG 569

Query: 356 LSHACLLSHR--GIDSVVREME-SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           L H+   S +   +   + E+E SAK   +       +LAY K       ++ L++L   
Sbjct: 570 LIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDN 629

Query: 413 HVKPDIVTIGILYD--ARRIGFDGTGALEMWKRIGFLFKTVEINTDPL----VLAVYGKG 466
              PDI     +    A+R      G +E   ++    +  ++  D +    ++++YG+ 
Sbjct: 630 GHSPDIKVFNAMISMCAKR------GWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGRE 683

Query: 467 HFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
                 EEV S +    +     TY  L+    KH 
Sbjct: 684 GMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHG 719



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
            +I    NS +  Q+ +  D  +   K  ++    +  +   C+ G+  EA  A  ++  
Sbjct: 569 GLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYD 628

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P ++++N++I   +K G    A+  L E+++  L P   TY+ L+  YG+  MY +
Sbjct: 629 NGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYK 688

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  +  M+  G +P+ ITYN L+  +   G +      +  M+  R+   + T   ++ 
Sbjct: 689 AEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVG 748

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           +Y + G+  +     + +        +   + L + Y +N   SR    GD
Sbjct: 749 SYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASPSRKKPGGD 799



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 150/398 (37%), Gaps = 60/398 (15%)

Query: 100 DWTKDHFWAVIRFLKNSS------RSRQIP---QVFDMWKNIEKSRINEFNSQKIIGMLC 150
           +W + H    +R +  +S         Q+P   ++F+  K  E   ++ +    +I +L 
Sbjct: 165 EWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILS 224

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQS 209
                +E +  F+ M+    + +   YN ++  Y K G  ++       EMK++ +SP  
Sbjct: 225 RARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDD 284

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +I A  +     E     + MK  GC P+ +TYN L+  +   G+ K        
Sbjct: 285 YTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVE 344

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M    +     T   ++ AY   G+ D+     K LL+                      
Sbjct: 345 MEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK--------------------- 383

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
                 L  D        E  +C  + +      +        EM       N+ T NI+
Sbjct: 384 -----GLCPD--------EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNIL 430

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL--------EMW 441
           +  Y +M+    +  +   +  ++  PD+VT   L  +    F   G L        EM 
Sbjct: 431 IDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKS----FGNCGMLTEVSNVFREM- 485

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           KR G++     ++T  +++  YG+  ++ Y  ++Y  L
Sbjct: 486 KRAGYM---PGVDTFNILIECYGRCGYVDYSVDIYKGL 520



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 120/308 (38%), Gaps = 39/308 (12%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++ ++ F+ M+     P L  +NS++  +   G   E      EMK     P  DT++ 
Sbjct: 440 LDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNI 499

Query: 215 LIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI+ YG+    D  +D+   +++  G  P   T+  L+   A  G  ++ E   + M   
Sbjct: 500 LIECYGRCGYVDYSVDIYKGLLRT-GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEA 558

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS-RTPLKEDLVRKLAEVYIKNYM--- 329
            + L  +    ++ +Y N G   ++ K+   L  S + PL   L +     Y K  M   
Sbjct: 559 GLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNE 618

Query: 330 ----FSRLDDLGDDLASRIGRTELVWC---------LRLL-------------SHACLLS 363
                ++L D G     ++    +  C         ++LL             ++ CL+S
Sbjct: 619 AQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMS 678

Query: 364 HRG-------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
             G        + V+ EM  A    N+ T N +L +Y K         +  ++    V+P
Sbjct: 679 MYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRP 738

Query: 417 DIVTIGIL 424
           D  T   L
Sbjct: 739 DNFTFNTL 746



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L  EG  ++  +  QEM    L+ S   +  +IH Y+  G+F +   +++E+++  
Sbjct: 535 LMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSA 594

Query: 205 LSPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P S       + AY K  M +E  + L  +  +G SPD   +N +I   A  G ++R 
Sbjct: 595 KQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERA 654

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               + +   ++     T   ++  Y   GM  K E+    +  +           L   
Sbjct: 655 VKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYS 714

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           Y K+    R+DD     A+R                          V  +M +A+VR + 
Sbjct: 715 YTKH---GRMDD-----AAR--------------------------VFGDMVAARVRPDN 740

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---------RRIGFDG 434
            T N ++ +Y  +  +K    ++  +     +P  +T   L D          ++ G DG
Sbjct: 741 FTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASPSRKKPGGDG 800

Query: 435 TG-ALEMWKRI 444
            G  +EM K +
Sbjct: 801 GGRPIEMIKEL 811


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 11/201 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           F+    +S ++P+  ++ KN++    K  +  FN+  +I  LC+ G ++EA +   EME 
Sbjct: 60  FVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNT--LIAGLCKAGRLDEAQQVLDEMER 117

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
                +L  YN++I+G S  G+  EA+L    M+ M  +P + TY+ +I  + K    D 
Sbjct: 118 SGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHGFCKSGEIDR 174

Query: 228 IDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV-AI 285
               L+ MK   GCSPD  TY++LI     +  L++ +   + M+ ++    S      +
Sbjct: 175 AYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTL 234

Query: 286 LDAYMNFGMLDKMEKFYKRLL 306
           +D Y     LD+  +    +L
Sbjct: 235 VDGYCKAQDLDRARELLSSML 255



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 127/337 (37%), Gaps = 45/337 (13%)

Query: 150 CEEGLMEEAVRAFQEME---GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           C  G ++ A+   +EME   G A  PS+  YN  +H   K GK  EA+  +  MK+    
Sbjct: 29  CLAGELQAAMDLLREMEQQPGMAPTPSM--YNFFVHALCKSGKVPEAMEVVKNMKDGACK 86

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P   T++ LI    K    DE    L  M+  G + + +TYN LI   + AG        
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            + M T      + T  AI+  +   G +D+   F + +            ++ A     
Sbjct: 147 MQGMTTTP---DTQTYNAIIHGFCKSGEIDRAYGFLEEM------------KQRAGCSPD 191

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK-VRWNVT 384
            + +S                       L++  C  S+ R  D +++EM   K    +V 
Sbjct: 192 TFTYS----------------------ILINGLCKSSNLRKADELLQEMIGRKDCCASVV 229

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALEMWKR 443
             N ++  Y K +D    R LLS +      PD+VT   + D   R G    G   + K 
Sbjct: 230 AFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKM 289

Query: 444 IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
           +    K   +    LV  +   G  +  C  V   LE
Sbjct: 290 VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 1/160 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLF 196
           + F    +I  LC+   + +A    QEM G      S+  +N+++ GY K    + A   
Sbjct: 191 DTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+ M E   +P   TY  +I    +    D+    L+ M   GC PD +TY +L+     
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           AG +       K ML       + T   + D       LD
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLD 350



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC  G +++     ++M     KP +  Y  ++ G  K GK  EA   +  M E  
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEIDM 230
            +P + TY    DGL +        D++DM
Sbjct: 329 CTPNAVTYSLVFDGLCK-------IDKLDM 351


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 21/238 (8%)

Query: 75  QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +A++ L+QR+ +    P  +           +  +++   N +R+ +  ++  M  N   
Sbjct: 151 EAMDVLLQRMPELGCTPDTV----------SYSILLKGFCNENRAEEALELLRMMANDHG 200

Query: 135 SRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
                N      +I  LC+  L + A   FQ+M    +KP+ + YN +IHGY  IGK+ E
Sbjct: 201 RSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKE 260

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +  L +M    L P   TY  L+          E+   L +M  +G SPDH  +N+   
Sbjct: 261 VVQMLEKMSARGLKPDCYTYGSLLNYLCALS---EMHSFLDLMVENGLSPDHHIFNIFFS 317

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMV---AILDAYMNFGMLDKMEKFYKRLLN 307
            +A  G++ +    +  M   R H  S  +V   A++DA    G +D  E  + +++N
Sbjct: 318 AYAKCGMIDKAMDIFNKM---RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMIN 372



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 2/207 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I  L N  R  +  ++ D+ +++   R + F+   +I   C  G  +EA + F  M
Sbjct: 417 FNTLICNLCNVGRVMEGRRLIDLMEHV-GVRPDAFSYTPLISGYCLAGRTDEAEKVFDGM 475

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               L P+   YN+++HGY    + ++A     EM    ++P   TY+ ++    + K +
Sbjct: 476 VSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRF 535

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E       M   G   D  TYN+++     +  +      ++S+ +K + L   T   +
Sbjct: 536 SEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIM 595

Query: 286 LDAYMNFGML-DKMEKFYKRLLNSRTP 311
           + A +  G   D M+ F     N   P
Sbjct: 596 IGALLKGGRKEDAMDLFAAIPANGLVP 622



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/334 (18%), Positives = 136/334 (40%), Gaps = 9/334 (2%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGML 149
           L ++  +G     H + +  F    ++   I +  D++  + +  +  N  N   +I  L
Sbjct: 297 LDLMVENGLSPDHHIFNI--FFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 354

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +++A   F +M    + P++ ++NS+++G   + K+  A   + EM +  + P +
Sbjct: 355 CKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA 414

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             ++ LI          E    + +M+  G  PD  +Y  LI  +  AG     E  +  
Sbjct: 415 VFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDG 474

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M++  +     T   +L  Y +   +D     ++ +L             +     +   
Sbjct: 475 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTTA 386
           FS   +L  ++ +   + ++     +L+  C      +D   +  +   S  ++ N+ T 
Sbjct: 535 FSEAKELYLNMINSGTKCDIYTYNIILNGLC--KSNCVDEAFKMFQSLCSKGLQLNIITF 592

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            I++ A LK    +    L + +P   + P++VT
Sbjct: 593 TIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVT 626



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 105/287 (36%), Gaps = 32/287 (11%)

Query: 161 AFQEMEGF-------ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           A  EM  F        L P   I+N     Y+K G  ++A+   N+M++  LSP    Y 
Sbjct: 289 ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYG 348

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI A  K    D+ ++    M  +G +P+ + +N L+         +R E     ML +
Sbjct: 349 ALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ 408

Query: 274 RMHLRSSTMVAILDAYMNFG-------MLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYI 325
            +   +     ++    N G       ++D ME    R    S TPL            I
Sbjct: 409 GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL------------I 456

Query: 326 KNYMFSRLDDLGD---DLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVR 380
             Y  +   D  +   D    IG +        L H    + R  D+  + REM    V 
Sbjct: 457 SGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVT 516

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V T N IL    + K F   + L   +     K DI T  I+ + 
Sbjct: 517 PGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNG 563



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 9/210 (4%)

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-- 280
           ++ + +D+ L+ M   GC+PD ++Y++L++ F      +      + M     H RS   
Sbjct: 148 RVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAND--HGRSCPP 205

Query: 281 ---TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              T   ++D      + D+ E  +++++++      D    L   Y+    +  +  + 
Sbjct: 206 NVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQML 265

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
           + +++R  + +      LL++ C LS   + S +  M    +  +    NI   AY K  
Sbjct: 266 EKMSARGLKPDCYTYGSLLNYLCALSE--MHSFLDLMVENGLSPDHHIFNIFFSAYAKCG 323

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                  + +++    + P++V  G L DA
Sbjct: 324 MIDKAMDIFNKMRQHGLSPNVVNYGALIDA 353


>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 42/334 (12%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ ML +    E+A   F+ M    L+P+L++Y +++  Y   G+ ++A   + +MK +
Sbjct: 133 KLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSV 192

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            +  P   TY  LI+       +D I+     M   G     +TYN +I  +  A + + 
Sbjct: 193 SDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFEL 252

Query: 263 MEGTYKSMLTKRMHLRS-STMVAILDAYMNFGMLDKMEKFYK--RLLNSRTPLK--EDLV 317
           ME +   M+     L    T+ + + AY N G ++KMEK+Y   +L+  R  +K    L+
Sbjct: 253 MESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILI 312

Query: 318 RKLAEVYIKNYMFSRLD--------------DLGDDLASRIGRTE--------------- 348
           R   +  +   M S ++              ++  ++  R+G  E               
Sbjct: 313 RSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVK 372

Query: 349 ---LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
              + +C  + +++     + +DS++R++E++ V  +    N +L AY +  D + +  L
Sbjct: 373 PNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGEL 432

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
              +  R  KPD +T   +  A    ++  G +E
Sbjct: 433 FLVMKERKCKPDNITFATMIQA----YNAQGMIE 462



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 72/156 (46%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + E+ V   + M+     P++  +N +I  + ++G   +   F  +MK   + P S TY 
Sbjct: 320 MYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYC 379

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L+ AY K     ++D  L+ ++    + D   +N ++  +  AG ++RM   +  M  +
Sbjct: 380 SLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKER 439

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           +    + T   ++ AY   GM++  +     ++ ++
Sbjct: 440 KCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTK 475



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 66/130 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M    G +E+    F +M+   +KP+   Y S++  YSK G   +    L +++  +
Sbjct: 346 VIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSD 405

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++  +  ++ ++ AYG+    + +     +MK   C PD+IT+  +IQ +   G+++  +
Sbjct: 406 VTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQ 465

Query: 265 GTYKSMLTKR 274
               +M+T +
Sbjct: 466 NLEVNMITTK 475


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +++AVR   EM    LK +L I NS+I+GY K G+ +EA   +  M + N
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P S +Y+ L+  Y +     E  ++C KM++ +G  P  +TYN L++     G     
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-----NSRTPLKEDL-- 316
              +  M+ + +         +LD        +     +K +L      SR      +  
Sbjct: 457 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-EME 375
           + K+ ++     +F ++ DLG        RT       L+   C  S+ G    V+  ME
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRT-------LIDGYCKASNVGQAFKVKGAME 569

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +  ++   N ++    K +    +  LL+E+  R + P+IVT G L D 
Sbjct: 570 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDG 621



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 128 MWKNI-----EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +WK+I      KSRI  FN+  +I  LC+ G M EA   F +M+     P    Y ++I 
Sbjct: 494 LWKDILARGFTKSRIT-FNT--MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY K     +A      M+   +SP  + Y+ LI    K +   E+   L  M + G +P
Sbjct: 551 GYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTP 610

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH---LRSSTMVAIL 286
           + +TY  LI  +   G+L +   +Y  M    +    +  STMV+ L
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 657



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 8/232 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           FLK+  R   I ++ D      K+ +  N       I  LC+ G +++A R F  +    
Sbjct: 685 FLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG 744

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P    Y ++IHGYS  G  +EA    +EM    L P   TY+ LI    K +  D   
Sbjct: 745 FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQ 804

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKRMHLRSSTMVAIL 286
                +   G  P+ +TYN LI  +   G    M+  +K    M+ + +     T  A++
Sbjct: 805 RLFHKLHQKGLFPNVVTYNTLIDGYCKIG---NMDAAFKLKDKMIEEGISPSVVTYSALI 861

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           +     G +++  K   +++ +    K      L + YI++    ++  L D
Sbjct: 862 NGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYD 913



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 155/414 (37%), Gaps = 59/414 (14%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VFDM                I+ +  E+GL + A+  F  M      PSL   NS+++
Sbjct: 156 PTVFDM----------------ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLN 199

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K G+ + A     +M  + + P       ++ A+ K    DE    +K M+  G  P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF- 301
           + +TY+ LI  +   G ++  +G  K M  K +     T   ++  Y     +D+ EK  
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 302 ---------------YKRLLNS--RTPLKEDLVRKLAE---------VYIKNYMFSRLDD 335
                          Y  L++   RT   +D VR L E         ++I N + +    
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 336 LGDDLASRIGRTELV-WCLR--------LLSHACLLSHRG-IDSVVREMESAKVRWNVTT 385
            G+   +    T +V W L+        LL   C   H     ++  +M    +   V T
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI- 444
            N +L    ++  F     +   +  R V PD V    L D      +  GA  +WK I 
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 445 --GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             GF    +  NT    L   GK   +   EE++  ++         TY+ LID
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGK---MVEAEEIFDKMKDLGCSPDGITYRTLID 550



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++ A R F ++    L P++  YN++I GY KIG  + A    ++M E  
Sbjct: 790 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEG 849

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY  LI    K+   +     L  M   G     I Y  L+Q +  +G ++++ 
Sbjct: 850 ISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIH 909

Query: 265 GTYKSMLTKRMHLRSSTMVAI 285
             Y       MH+R  +  AI
Sbjct: 910 KLY-----DMMHIRCLSTTAI 925


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 25/311 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +++ ++  QEM+   LKP+L  YNSII    K GK ++A   L EM    
Sbjct: 16  VINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQG 75

Query: 205 LSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + P +  Y  LI  + K       YK++DE       M+     PD I Y  +I      
Sbjct: 76  IVPDTVVYTTLIDGFCKLGNIQAAYKLFDE-------MEKQRIVPDFIAYTAVICGLCRC 128

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +   +  +  M ++ +     T   ++D Y   G ++K    + +++ S         
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRT-ELVWCL--RLLSHACLLSH-RGIDSVVRE 373
             LA+   K     ++D   + L    G+  +L  C    L++  C   + R    ++ E
Sbjct: 189 TALADGLCK---LGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEE 245

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ME A +  +  T   ++ AY K  +      LL E+  R ++P ++T  +L +    GF 
Sbjct: 246 MEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMN----GFC 301

Query: 434 GTGALEMWKRI 444
            +G LE  +R+
Sbjct: 302 MSGMLEDGERL 312



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 12/193 (6%)

Query: 122 IPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           I   + ++  +EK RI  +      +I  LC  G M EA + F +M    ++P    Y +
Sbjct: 96  IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-----DMCLKM 234
           +I GY K G+  +A    N+M +  L+P   TY  L     K    D       +MC K 
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG 215

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           ++L+ C     TYN L+     +G +++     + M    M+  + T   ++DAY   G 
Sbjct: 216 LQLNIC-----TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGE 270

Query: 295 LDKMEKFYKRLLN 307
           + K  +  + +L+
Sbjct: 271 MVKAHELLREMLD 283



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 1/257 (0%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  Y+++I+GY   G+  + L  + EM+   L P   TY+ +I    K    D+ +  
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M   G  PD + Y  LI  F   G ++     +  M  +R+        A++     
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            G + + +K + ++ +      E     L + Y K+    +   L + +        +V 
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 352 CLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
              L    C L      + ++ EM    ++ N+ T N ++    K  + +    L+ E+ 
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEME 247

Query: 411 TRHVKPDIVTIGILYDA 427
              + PD +T   L DA
Sbjct: 248 VAGMYPDTITFTTLMDA 264



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ + F +   + +S +  N      +   LC+ G ++ A     EM G  L+ ++ 
Sbjct: 162 KSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNIC 221

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS+++G  K G   +A+  + EM+   + P + T+  L+ AY K     +    L+ M
Sbjct: 222 TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREM 281

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              G  P  IT+N+L+  F  +G+L+  E     ML K +   ++T  +++  Y
Sbjct: 282 LDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  ++  LC+ G + +AV+  +EME   + P    + +++  Y K G+  +A   
Sbjct: 220 ICTYNS--LVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHEL 277

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM +  L P   T++ L+  +    M ++ +  L  M   G  P+  TYN L++++  
Sbjct: 278 LREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCI 337

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSST 281
              ++     YK M  + +   S+T
Sbjct: 338 RNNMRCTTEIYKGMCARGVMPDSNT 362



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 105/282 (37%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G ++ A + F EME   + P    Y ++I G  + GK  EA    N+M    
Sbjct: 86  LIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRG 145

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI  Y K    ++       M   G +P+ +TY  L       G +    
Sbjct: 146 VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M  K + L   T  ++++     G + +  K  + +  +           L + Y
Sbjct: 206 ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAY 265

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            K     +  +L  ++  R G    V    +L +   +S    D   ++  M    +  N
Sbjct: 266 CKTGEMVKAHELLREMLDR-GLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPN 324

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            TT N ++  Y    + +    +   +  R V PD  T  IL
Sbjct: 325 TTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNIL 366


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 159/382 (41%), Gaps = 67/382 (17%)

Query: 53  APSLDYHSTKHTTLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAV 109
           AP++  H     T L+E+Y   +  N   A+ +R+      P  +           +  +
Sbjct: 170 APNVVSH-----TALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALT----------YQIM 214

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK----IIGMLCEEGLMEEAVRAFQEM 165
           ++     S+ ++  ++FD   N EK  +     QK    II M  + G  E+A + F EM
Sbjct: 215 LKTFVEGSKFKEAEELFDSLLNKEKPVLKP--DQKMFHMIIYMFKKAGNYEKARKVFAEM 272

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               +  +   YNS++   +    + E     ++M+   L P   +Y  LI AYGK +  
Sbjct: 273 AARGVPQTTVTYNSLMSFETN---YKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARRE 329

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           +E     + M   G  P H  YN+L+  FA +G++++ +  +KSM   R      +   +
Sbjct: 330 EEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTM 389

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IKNYMFSRLDDLGDDLAS 342
           L AY+N   ++  E F++R       LK+D  R     Y   IK Y  +++    ++L  
Sbjct: 390 LSAYVNASDMEGAENFFRR-------LKQDGFRPNVVTYGTLIKGY--AKI----NNLEK 436

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            I R E                        EM+   +R N T    I+ AY K KDF   
Sbjct: 437 MIKRYE------------------------EMKVNGIRVNQTILTTIMDAYGKNKDFGSA 472

Query: 403 RVLLSELPTRHVKPDIVTIGIL 424
            +  +E+ +  ++PD     IL
Sbjct: 473 VIWFNEIESCGLRPDQKAKNIL 494



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   LN M +   +P   ++  L++AYG+ + Y+  +   + M+  G
Sbjct: 144 LITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGG 203

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYM--NFGMLD 296
             P  +TY ++++ F      K  E  + S+L K +  L+    +  +  YM    G  +
Sbjct: 204 PEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYE 263

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K  K +  +     P        L   +  NY    +  + D +  R G    V    LL
Sbjct: 264 KARKVFAEMAARGVPQTTVTYNSLMS-FETNY--KEVSKIYDQM-QRAGLQPDVVSYALL 319

Query: 357 SHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             A   + R  +  +V  EM  A +R      NI+L A+      +  +++   +     
Sbjct: 320 ISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRC 379

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINT 455
            PDI +   +  A     D  GA   ++R+   GF    V   T
Sbjct: 380 SPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGT 423



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 44/97 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A   F+ ++    +P++  Y ++I GY+KI    + +    EMK   +         
Sbjct: 399 MEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTT 458

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++ AYGK K +    +    ++  G  PD    N+L+
Sbjct: 459 IMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILL 495



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 111/267 (41%), Gaps = 17/267 (6%)

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKY 222
           +G+A  P++  + +++  Y +  ++N A      M+     P + TY  +++ +    K+
Sbjct: 167 KGYA--PNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKF 224

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
           K  +E+   L   +     PD   ++++I  F  AG  ++    +  M  + +   + T 
Sbjct: 225 KEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTY 284

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-----LG 337
            +++    N+    ++ K Y ++   R  L+ D+V     + I  Y  +R ++       
Sbjct: 285 NSLMSFETNY---KEVSKIYDQM--QRAGLQPDVVS--YALLISAYGKARREEEALAVFE 337

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
           + L + I  T   + + L + A          V + M+  +   ++ +   +L AY+   
Sbjct: 338 EMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNAS 397

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGIL 424
           D +        L     +P++VT G L
Sbjct: 398 DMEGAENFFRRLKQDGFRPNVVTYGTL 424


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 180/438 (41%), Gaps = 71/438 (16%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           W++I  L +  RS+ +               +EF    +I     EG+++EA R F +++
Sbjct: 289 WSMILELLDEMRSKGL-------------EFDEFTCTTVISACGREGILDEARRFFDDLK 335

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               KP    YNS++  + K G + EAL  L EM++ N  P + TY+ L+ AY +   +D
Sbjct: 336 LNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHD 395

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM---------------- 270
           E    +  M   G  P+ ITY  +I  +  AG   +    +  M                
Sbjct: 396 EGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVL 455

Query: 271 --LTKRMHLRSSTMVAIL-DAYMNFGMLDKM--------------EKFYKRLLNSRTPLK 313
             L KR   RS  M+ IL D  +N    D++              +KF  ++L       
Sbjct: 456 VLLGKRS--RSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCG 513

Query: 314 EDLVRKLAEVYIKNY--MFSRLDDL---GDDLASRIGRTELVWCLRLLSHACLLSHRG-- 366
            +  ++     I  Y    S +D     G+ +A+  G T  +     L +A  L+ RG  
Sbjct: 514 FEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAA--GFTPCITTYNALLNA--LARRGNW 569

Query: 367 --IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              +SVV +M     + N T+ +++L  Y K  + + L  +  E+   HV P  + +  L
Sbjct: 570 KAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTL 629

Query: 425 ----YDARRI-GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
               Y  R++ G +   A    +  G+    V IN+   +L+++ +   L    E+   +
Sbjct: 630 VLTNYKCRQLKGME--RAFHQLQNNGYKLDMVVINS---MLSMFVRNQKLEKAHEMLDVI 684

Query: 480 EPYSREKKRWTYQNLIDL 497
                +    TY +LIDL
Sbjct: 685 HVSGLQPNLVTYNSLIDL 702



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +++ L   S+     ++FD+   +E+  ++      ++      G  + A+  F++M+  
Sbjct: 208 MVKMLGRESQYSIASKLFDIIP-VEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKET 266

Query: 169 ALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            L P+L  YN ++  Y K+G+ ++  L  L+EM+   L     T   +I A G+  + DE
Sbjct: 267 GLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDE 326

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  +KL+G  P   TYN ++Q F  AG+        K M        + T   ++ 
Sbjct: 327 ARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVA 386

Query: 288 AYMNFGMLDK 297
           AY+  G  D+
Sbjct: 387 AYVRAGFHDE 396



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/279 (18%), Positives = 125/279 (44%), Gaps = 5/279 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  E+G  +   +  +EM+    +P  E +N++I  Y + G   +      EM    
Sbjct: 489 MLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAG 548

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY+ L+ A  +   +   +  +  M+  G  P+  +Y+LL+  ++ AG ++ +E
Sbjct: 549 FTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLE 608

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG--MLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
                M     H+  S M+       N+    L  ME+ + +L N+   L   ++  +  
Sbjct: 609 KV--EMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLS 666

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRW 381
           ++++N    +  ++ D +     +  LV    L+  +A +      + ++++++++ +  
Sbjct: 667 MFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISP 726

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +V + N ++  + K    +    +LSE+    V+P  +T
Sbjct: 727 DVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPIT 765



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 136/350 (38%), Gaps = 62/350 (17%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +++      G  +E       M    + P+   Y ++I+ Y K G  ++AL    +MKE+
Sbjct: 383 ELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKEL 442

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT----------------- 246
              P   TY+ ++   GK    +++   L  MKL+GC PD IT                 
Sbjct: 443 GCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFV 502

Query: 247 ------------------YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                             +N LI  +   G    +   Y  M+        +T  A+L+A
Sbjct: 503 SQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNA 562

Query: 289 YMNFG--------MLDKMEKFYKRLLNSRTPL-----KEDLVRKLAEVYIKNYMFSRLDD 335
               G        +LD  +K +K    S + L     K   VR L +V ++ Y       
Sbjct: 563 LARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYD------ 616

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            G    S +    L+  L L ++ C    +G++    ++++   + ++   N +L  +++
Sbjct: 617 -GHVFPSWM----LLRTLVLTNYKC-RQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVR 670

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWKRI 444
            +  +    +L  +    ++P++VT   L D   R+G D   A EM K I
Sbjct: 671 NQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVG-DCWKAEEMLKDI 719



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P+L  YNS+I  Y+++G   +A   L +++   +SP   +Y+ +I+ + K  +  E 
Sbjct: 688 GLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEA 747

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M  +G  P  IT+N  +  +A  GL    +   + M+         T   ++D 
Sbjct: 748 IRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDG 807

Query: 289 YM 290
           Y+
Sbjct: 808 YI 809



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 72/167 (43%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           RAF +++    K  + + NS++  + +  K  +A   L+ +    L P   TY+ LI  Y
Sbjct: 644 RAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLY 703

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            +     + +  LK ++  G SPD ++YN +I+ F   GL++        M    +    
Sbjct: 704 ARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCP 763

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            T    +  Y   G+  + ++  + ++       E   + + + YIK
Sbjct: 764 ITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIK 810


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 9/313 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS      FDM + +E+  +  + F    II  LC +G ++ A+  F+EME   +K S+ 
Sbjct: 205 RSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++ G  K GK+N+  L L +M    + P   T++ L+  + K     E +   K M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ ITYN L+  +     L         M+  +      T  +++  Y     +
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 384

Query: 296 DKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           D   K ++ +  S+  L  + V    L + + ++      ++L  ++ S     +++   
Sbjct: 385 DDGMKVFRNI--SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 354 RLLSHACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
            LL   C      + ++ +  +++ +K+   +     I+    K    +    L   LP 
Sbjct: 443 ILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501

Query: 412 RHVKPDIVTIGIL 424
           + VKP+++T  ++
Sbjct: 502 KGVKPNVMTYTVM 514



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 11/303 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC EG + +AV     M     +P +  YNSI++G  + G  + A   L +
Sbjct: 161 FNT--LINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRK 218

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E N+     TY  +I +  +    D      K M+  G     +TYN L++    AG 
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
                   K M+++ +     T   +LD ++  G L +  + YK ++             
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMES 376
           L + Y      S  +++ D +       ++V    L+   C++    +D    V R +  
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR--VDDGMKVFRNISK 396

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N  T +I++  + +    K    L  E+ +  V PD++T GIL D    G    G
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD----GLCDNG 452

Query: 437 ALE 439
            LE
Sbjct: 453 KLE 455



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F++++   +   + +Y +II G  K GK  +A      +    + P 
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I    K     E ++ L+ M+ DG +P+  TYN LI+     G L       +
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            M +      +S++  ++D  ++ G LDK
Sbjct: 568 EMKSCGFSADASSIKMVIDMLLS-GELDK 595



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  +++++++KS+++        II  +C+ G +E+A   F  +    +KP++  Y 
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
            +I G  K G  +EA + L +M+E   +P   TY+ LI+A+
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 131/324 (40%), Gaps = 43/324 (13%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++G     G+  EA+  F  ++   L+P +  Y S+++ Y +  +  +A
Sbjct: 220 KPNIVAYNS--LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKA 277

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               N+MK+ +  P   +Y+ LI AYG   M  E    L  M+ DG  PD ++ + L+  
Sbjct: 278 REVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
                 + R+E   ++  ++ + L +    + + +Y++FG  +K  + Y       T ++
Sbjct: 338 CGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELY-------TSMR 390

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
           E  V+  A  Y  N + S    LG    S          LR                  +
Sbjct: 391 ESNVKPDAVTY--NILISGSSKLGKYTES----------LRFF---------------ED 423

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M  +KV       + ++ +Y+K           S +      PD++T   L  A   G  
Sbjct: 424 MVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGG 483

Query: 434 GTGALEMWKRIGFLFKTVEINTDP 457
                  WKR   LFK +E+N  P
Sbjct: 484 -------WKRAWDLFKEMEVNGIP 500



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A+  +  M    +KP    YN +I G SK+GK+ E+L F  +M +  +S   + Y
Sbjct: 377 GDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVY 436

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI +Y K     E +     MK  GC PD +TY  LIQ +   G  KR    +K M  
Sbjct: 437 SSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEV 496

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +   +    ++++A+   G  +++ +  + +     PL +
Sbjct: 497 NGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQ 538



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 139/312 (44%), Gaps = 11/312 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  +IYNS+IH +S+ G++  A+  + +M    + P   TY+ 
Sbjct: 27  VDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNN 86

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD +T+N+++          +    ++ M   
Sbjct: 87  VINACGAAGNWKKALELCKKMTE-NGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFS 331
            +   + T+  I+   +  G   +  + +  +   RT    D+V    +   Y       
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 332 RLDDLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
               + D + +   +  +V    LL ++A    HR   ++   ++   +R ++ +   +L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
            AY +    +  R + +++     KP+ V+   L DA    +   G L+  + +G L + 
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDA----YGSAGMLK--EAVGLLHEM 319

Query: 451 VEINTDPLVLAV 462
            +    P V+++
Sbjct: 320 EKDGIQPDVVSI 331



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 3/256 (1%)

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           +IY  +I  Y++  + ++A     EM+E    P +D Y+ LI A+ +   +      ++ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M      P   TYN +I     AG  K+     K M    +     T   +L A  N   
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR--TELVWC 352
             K   +++ +  +        +  +    +K        +L + +  R  +   ++V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 353 LRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
             ++   C+        ++   M +  V+ N+   N +L AY      +    + + +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 412 RHVKPDIVTIGILYDA 427
             ++PDIV+   L +A
Sbjct: 252 NGLRPDIVSYTSLLNA 267


>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
 gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
          Length = 560

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K+I +L   G    A + F EM     +P+  +Y ++I  
Sbjct: 191 QVFEMLKEQPFYHPKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGA 250

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  ++AL  LN+MK   L  P   TY  +I+A      +D ID+  K M     +P
Sbjct: 251 YCRSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAP 310

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME     ML +        TM  IL  + N G ++ MEK+
Sbjct: 311 NTVTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKW 370

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++  +     +   +  L   Y K  M+ ++                            
Sbjct: 371 YEKFRSYGIEPETRTLNILIGAYGKKRMYDKM---------------------------- 402

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+ +  D K++    +++ +  +KPD  T 
Sbjct: 403 ------SAVMEYMRKLAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTF 456

Query: 422 GILYDARRIGFDGTG 436
             L +    GF   G
Sbjct: 457 CCLIN----GFSKAG 467



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 23/251 (9%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQ 124
           T L+ +Y     L+  +Q LN     PL   Q D  +T   +  +I+   +++R      
Sbjct: 245 TALIGAYCRSGLLDDALQLLNDMKGSPL--CQPD-VYT---YSTIIKACVDATR------ 292

Query: 125 VFD----MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY 177
            FD    M+K++ +  I  N      ++    + G +++  +   +M +  A KP +   
Sbjct: 293 -FDLIDVMYKDMAERSIAPNTVTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTM 351

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++   ++ M+ 
Sbjct: 352 NIILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRK 411

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                   TYN +I+ FA AG  K ME T+  M ++ M   + T   +++ +   G   K
Sbjct: 412 LAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAGQFHK 471

Query: 298 ---MEKFYKRL 305
              M K  +RL
Sbjct: 472 VVGMVKLAERL 482



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 60/119 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    E G  +     F +M    +KP  + +  +I+G+SK G+F++ +  +   + ++
Sbjct: 424 VIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAGQFHKVVGMVKLAERLD 483

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +   +  ++ ++ A  +     E++   + MK   C PD +TY++L++ +   G+  ++
Sbjct: 484 VPANTSFHNAILGACARADDLMEMERVFRHMKHTQCDPDAVTYSILVEAYRKEGMTDKI 542



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 88/191 (46%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +   +G +E   + +++   + ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 354 ILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLA 413

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ AG   ++ 
Sbjct: 414 FPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAGQFHKVV 473

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ + ++T    AIL A      L +ME+ ++ + +++          L E
Sbjct: 474 GMVK--LAERLDVPANTSFHNAILGACARADDLMEMERVFRHMKHTQCDPDAVTYSILVE 531

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 532 AYRKEGMTDKI 542


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ F    ++      G +++A+ AF  +     +PSL  + +I+H     G+ +E L  
Sbjct: 240 LDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRT 299

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L++MK + + P +  Y+ +I A+GK +    +    K M+ DG + D  TYN LI  +A 
Sbjct: 300 LDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAK 359

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRL 305
            G     E  Y  +L KR  L+ +  T+ +++DAY      +K+ +   R+
Sbjct: 360 TGKAVEAEKFY--VLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRM 408



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 6/215 (2%)

Query: 105 HFW-AVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           H W A++  L  + RS ++ +  D  K +  K     +N+  II    +   +   +  F
Sbjct: 278 HAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNT--IINAFGKARNIHSMMDTF 335

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M    +   ++ YN++I  ++K GK  EA  F   MK   L P   T   L+ AY + 
Sbjct: 336 KAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRA 395

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY-KSMLTKRMHLRSST 281
             ++++   +  MK +G +PD++ +NLLI  +   G  +  E     +M    + L ++ 
Sbjct: 396 DQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGIALETNN 455

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
             ++++A+   G LDK E++  R +N+    K D+
Sbjct: 456 FTSVIEAWARNGNLDKAEEWLHR-MNTDYATKPDI 489



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 11/208 (5%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           WA  RF K + R + +P + +M  N           + +I    EE   + A + +  + 
Sbjct: 27  WAA-RFRKLTEREKTLPILLEMLANAPPGPTGA-KYEMLIEQCFEEKRPDLATQLYDHLR 84

Query: 167 GFALKP------SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
                        L +++ ++ GY + G          +M+E+ + P   TY  LI A+G
Sbjct: 85  AETTTTQAAAPVPLAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWG 144

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR---MHL 277
           K      +    + M+  G  P+ + Y  +I      G +  ME T+  M       +  
Sbjct: 145 KAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEP 204

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             +T  A++ +Y    M+DKME   +R+
Sbjct: 205 NRTTYNAMVHSYGQQQMMDKMEALVERM 232



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +    +A+++M    L+P++ +Y S+I    K+G          EM+  +
Sbjct: 139 LIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSS 198

Query: 205 ---LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCSPDHITYNLLIQEFACAGLL 260
              + P   TY+ ++ +YG+ +M D+++  ++ M+ D G   D+ T++ ++  ++ AG +
Sbjct: 199 GDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRV 258

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            +    + S+             AIL      G  D+M
Sbjct: 259 DKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEM 296


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +++AVR   EM    LK +L I NS+I+GY K G+ +EA   +  M + N
Sbjct: 304 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 363

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P S +Y+ L+  Y +     E  ++C KM++ +G  P  +TYN L++     G     
Sbjct: 364 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDA 422

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-----NSRTPLKEDL-- 316
              +  M+ + +         +LD        +     +K +L      SR      +  
Sbjct: 423 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 482

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-EME 375
           + K+ ++     +F ++ DLG        RT       L+   C  S+ G    V+  ME
Sbjct: 483 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRT-------LIDGYCKASNVGQAFKVKGAME 535

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +  ++   N ++    K +    +  LL+E+  R + P+IVT G L D 
Sbjct: 536 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDG 587



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 128 MWKNI-----EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +WK+I      KSRI  FN+  +I  LC+ G M EA   F +M+     P    Y ++I 
Sbjct: 460 LWKDILARGFTKSRIT-FNT--MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 516

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY K     +A      M+   +SP  + Y+ LI    K +   E+   L  M + G +P
Sbjct: 517 GYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTP 576

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH---LRSSTMVAIL 286
           + +TY  LI  +   G+L +   +Y  M    +    +  STMV+ L
Sbjct: 577 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 623



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 155/414 (37%), Gaps = 59/414 (14%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VFDM                I+ +  E+GL + A+  F  M      PSL   NS+++
Sbjct: 122 PTVFDM----------------ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLN 165

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K G+ + A     +M  + + P       ++ A+ K    DE    +K M+  G  P
Sbjct: 166 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 225

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF- 301
           + +TY+ LI  +   G ++  +G  K M  K +     T   ++  Y     +D+ EK  
Sbjct: 226 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 302 ---------------YKRLLNS--RTPLKEDLVRKLAE---------VYIKNYMFSRLDD 335
                          Y  L++   RT   +D VR L E         ++I N + +    
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 336 LGDDLASRIGRTELV-WCLR--------LLSHACLLSHRG-IDSVVREMESAKVRWNVTT 385
            G+   +    T +V W L+        LL   C   H     ++  +M    +   V T
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI- 444
            N +L    ++  F     +   +  R V PD V    L D      +  GA  +WK I 
Sbjct: 406 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 465

Query: 445 --GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             GF    +  NT    L   GK   +   EE++  ++         TY+ LID
Sbjct: 466 ARGFTKSRITFNTMISGLCKMGK---MVEAEEIFDKMKDLGCSPDGITYRTLID 516



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 5/159 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           FLK+  R   I ++ D      K+ +  N       I  LC+ G +++A R F  +    
Sbjct: 651 FLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG 710

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P    Y ++IHGYS  G  +EA    +EM    L P   TY+ LI    K +  D   
Sbjct: 711 FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQ 770

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
                +   G  P+ +TYN LI  +   G    M+  +K
Sbjct: 771 RLFHKLHQKGLFPNVVTYNTLIDGYCKIG---NMDAAFK 806



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 34/222 (15%)

Query: 118 RSRQIPQVFDMWK--NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +SR++ +V D+     I     N      +I   C+EG++++A  ++ EM    L  ++ 
Sbjct: 555 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 614

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP------QSD------------------- 210
           I ++++ G  ++G+ +EA L + +M +    P      +SD                   
Sbjct: 615 ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKT 674

Query: 211 -------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
                   Y+  I    K    D+      M+ L G  PD+ TY  LI  ++ AG +   
Sbjct: 675 FLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 734

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 ML + +     T  A+++       +D+ ++ + +L
Sbjct: 735 FRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 776



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++ A R F ++    L P++  YN++I GY KIG  + A    ++M E  
Sbjct: 756 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEG 815

Query: 205 LSPQ 208
           +SP 
Sbjct: 816 ISPS 819



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA R   EM    L P++  YN++I+G  K    + A    +++ +  L P   TY
Sbjct: 729 GNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTY 788

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           + LI  Y K    D        M  +G SP  I  NLL
Sbjct: 789 NTLIDGYCKIGNMDAAFKLKDKMIEEGISP-SIQCNLL 825


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 50  LSSAPSLDYHSTKHTTLLVESYHEH---QALNALIQRLNKKVSCPLQILQHDGDWTKDHF 106
           +S  P++  H+T+    ++E    H   + + A+ + + KK      I++ D     D +
Sbjct: 112 ISEFPTV-LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKK------IIRRD----LDTY 160

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
             + + L      RQ+  V +  +      +N ++   +I +L + G   EA+  ++ M 
Sbjct: 161 LTIFKALSIRGGLRQMTTVLNKMRK-AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              LKPSL+ Y++++    K       ++ L EM+++ L P   T+   I+  G+    D
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E     + M  +GC PD +TY +LI     AG L+  +  +  M            + +L
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 287 DAYMNFGMLDKMEKFYKRL 305
           D + +FG LD  ++F+ ++
Sbjct: 340 DKFNDFGDLDTFKEFWSQM 358



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)

Query: 117  SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            ++S  + +  D + ++  S  R        +I  L + G +EEA+R F+EM  +  KP+ 
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928

Query: 175  EIYNSIIHGYSKI-----------------------------------GKFNEALLFLNE 199
             I+N +I+GY KI                                   G+ +EAL + NE
Sbjct: 929  AIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE 988

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +K   L P    Y+ +I   GK +  +E       M+  G  PD  TYN L+     AG+
Sbjct: 989  LKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGM 1048

Query: 260  LKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            +++ +  Y+ +    +     T  A++  Y
Sbjct: 1049 VEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++  LC  G ++EA+  F E++   L P    YN II+G  K  +  EAL   NEM+   
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + P   TY+ L+   G   M ++     + ++L G  PD  TYN LI+ ++ +   +   
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 265  GTYKSMLT 272
              YK+M+ 
Sbjct: 1089 TVYKNMMV 1096



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 27/290 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +LC+    +EA   F  M    + P+L  YN++I G  + G+  +AL  L  M+ + 
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY+  I  +GK     +     + MK  G  P+ +  N  +   A  G L+  +
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  +    +   S T   ++  Y   G +D+       ++ +       +V  L +  
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 325 IKN-------YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE---- 373
            K         MF R+ D+      ++  T       ++++  LLS  G +  V++    
Sbjct: 553 YKAGRVDEAWQMFDRMKDM------KLSPT-------VVTYNTLLSGLGKEGRVQKAIEL 599

Query: 374 ---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              M   K   N  + N +L  + K  + +    + S++     KPD++T
Sbjct: 600 FESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G ++EA + F  M+   L P++  YN+++ G  K G+  +A+     M E  
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKK 607

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK 261
            SP + +++ L+  + K    DE+++ LKM   M +  C PD +TYN +I      GL+K
Sbjct: 608 CSPNTISFNTLLDCFCKN---DEVELALKMFSKMTVMDCKPDVLTYNTVIY-----GLIK 659

Query: 262 RMEGTYK----SMLTKRMHLRSSTMVAILDAYMNFGML 295
             +  +       L K MH    T+  +L   +  G +
Sbjct: 660 ENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQI 697



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 117 SRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +S +I ++F+++K +   + + +      +I  L +   +++A+  F ++     +P+ 
Sbjct: 834 GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y  +I G +K+G+  EA+    EM +    P    ++ LI  YGK    +      K 
Sbjct: 894 RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 235 MKLDGCSPDHITYNLLIQEFACAG 258
           M  +G  PD  +Y +L+     AG
Sbjct: 954 MVNEGIRPDLKSYTILVDCLCLAG 977



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 31/300 (10%)

Query: 161  AFQEMEGF----ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            A+Q  + F     + P+L  YN +I    ++    +A     +MK +  +P + T++ L+
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 217  QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
              +GK     E+    K M    C PD ITYN++I   A +  L +    +  +++    
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 277  LRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAEVYIKNYM 329
                T   ++D     G L++  + ++ + +        +   L+    K+ +      +
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 330  FSRLDDLG--DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKVRWNVT 384
            F R+ + G   DL S    T LV CL      CL     +D  +    E++S  +  +  
Sbjct: 951  FKRMVNEGIRPDLKS---YTILVDCL------CLAGR--VDEALYYFNELKSTGLDPDFI 999

Query: 385  TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              N I+    K +  +    L +E+  R + PD+ T    Y++  +     G +E  KR+
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT----YNSLMLNLGLAGMVEQAKRM 1055



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 156/400 (39%), Gaps = 41/400 (10%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F   IR L    R+ +I + +++++ +  E    +      +I  LC  G +E A   F 
Sbjct: 265 FTICIRVL---GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFV 321

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M+    KP   IY +++  ++  G  +    F ++M+     P   T+  L+    K +
Sbjct: 322 KMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKAR 381

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +DE      +M+  G  P+  TYN LI     AG ++       +M +  +   + T  
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYN 441

Query: 284 AILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             +D +   G   K +E F K       P   ++V   A +Y        L ++G     
Sbjct: 442 IFIDYFGKSGETGKAVETFEKMKAKGIVP---NIVACNASLY-------SLAEMG----- 486

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
                      RL         R   ++   +    +  +  T N+++  Y K+      
Sbjct: 487 -----------RL---------REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEA 526

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
             LLSE+     +PD++ +  L D+         A +M+ R+  +  +  + T   +L+ 
Sbjct: 527 VNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
            GK   ++   E++ S+          ++  L+D   K++
Sbjct: 587 LGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKND 626



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + +D++K+++      + F    ++ +  + G + E    ++EM     KP    YN +I
Sbjct: 806 KAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
              +K    ++AL F  ++   +  P   TY  LI    K    +E     + M   GC 
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFGMLDKME 299
           P+   +N+LI  +   G  +     +K M+ +  R  L+S T+  ++D     G +D+  
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI--LVDCLCLAGRVDEAL 983

Query: 300 KFYKRLLNSRTPLKEDLV 317
            ++  L    T L  D +
Sbjct: 984 YYFNEL--KSTGLDPDFI 999


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 50  LSSAPSLDYHSTKHTTLLVESYHEH---QALNALIQRLNKKVSCPLQILQHDGDWTKDHF 106
           +S  P++  H+T+    ++E    H   + + A+ + + KK      I++ D     D +
Sbjct: 112 ISEFPTV-LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKK------IIRRD----LDTY 160

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
             + + L      RQ+  V +  +      +N ++   +I +L + G   EA+  ++ M 
Sbjct: 161 LTIFKALSIRGGLRQMTTVLNKMRK-AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              LKPSL+ Y++++    K       ++ L EM+++ L P   T+   I+  G+    D
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E     + M  +GC PD +TY +LI     AG L+  +  +  M            + +L
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 287 DAYMNFGMLDKMEKFYKRL 305
           D + +FG LD  ++F+ ++
Sbjct: 340 DKFNDFGDLDTFKEFWSQM 358



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)

Query: 117  SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            ++S  + +  D + ++  S  R        +I  L + G +EEA+R F+EM  +  KP+ 
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928

Query: 175  EIYNSIIHGYSKI-----------------------------------GKFNEALLFLNE 199
             I+N +I+GY KI                                   G+ +EAL + NE
Sbjct: 929  AIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE 988

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +K   L P    Y+ +I   GK +  +E       M+  G  PD  TYN L+     AG+
Sbjct: 989  LKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGM 1048

Query: 260  LKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            +++ +  Y+ +    +     T  A++  Y
Sbjct: 1049 VEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++  LC  G ++EA+  F E++   L P    YN II+G  K  +  EAL   NEM+   
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + P   TY+ L+   G   M ++     + ++L G  PD  TYN LI+ ++ +   +   
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 265  GTYKSMLT 272
              YK+M+ 
Sbjct: 1089 TVYKNMMV 1096



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G   +AV  F++M+   + P++   N+ ++  +++G+  EA    N ++E  L+P S 
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ +++ Y K    DE    L  M  +GC PD I  N LI     AG +      +  M
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
              ++     T   +L      G + K  + ++ ++  +          L + + KN
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKN 625



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 27/290 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +LC+    +EA   F  M    + P+L  YN++I G  + G+  +AL  L+ M+ + 
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY   I  +GK     +     + MK  G  P+ +  N  +   A  G L+  +
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  +    +   S T   ++  Y   G +D+       ++ +       +V  L +  
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 325 IKN-------YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE---- 373
            K         MF R+ D+      ++  T       ++++  LLS  G +  V++    
Sbjct: 553 YKAGRVDEAWQMFDRMKDM------KLSPT-------VVTYNTLLSGLGKEGRVQKAIEL 599

Query: 374 ---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              M   K   N  + N +L  + K  + +    + S++     KPD++T
Sbjct: 600 FESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 117 SRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +S +I ++F+++K +   + + +      +I  L +   +++A+  F ++     +P+ 
Sbjct: 834 GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y  +I G +K+G+  EA+    EM +    P    ++ LI  YGK    +      K 
Sbjct: 894 RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 235 MKLDGCSPDHITYNLLIQEFACAG 258
           M  +G  PD  +Y +L+     AG
Sbjct: 954 MVNEGIRPDLKSYTILVDCLCLAG 977



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G ++EA + F  M+   L P++  YN+++ G  K G+  +A+     M    
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKK 607

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK 261
            SP + +++ L+  + K    DE+++ LKM   M +  C PD +TYN +I      GL+K
Sbjct: 608 CSPNTISFNTLLDCFCKN---DEVELALKMFSKMTVMDCKPDVLTYNTVIY-----GLIK 659

Query: 262 RMEGTYK----SMLTKRMHLRSSTMVAILDAYMNFGML 295
             +  +       L K MH    T+  +L   +  G +
Sbjct: 660 ENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQI 697



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 157/400 (39%), Gaps = 41/400 (10%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F   IR L    R+ +I + +++++ +  E    +      +I  LC  G +E A   F 
Sbjct: 265 FTICIRVL---GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFV 321

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M+    KP   IY +++  ++  G  +    F ++M+     P   T+  L+    K +
Sbjct: 322 KMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKAR 381

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +DE      +M+  G  P+  TYN LI     AG ++       +M +  +   + T +
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYI 441

Query: 284 AILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             +D +   G   K +E F K       P   ++V   A +Y        L ++G     
Sbjct: 442 TFIDYFGKSGETGKAVETFEKMKAKGIVP---NIVACNASLY-------SLAEMG----- 486

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
                      RL         R   ++   +    +  +  T N+++  Y K+      
Sbjct: 487 -----------RL---------REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEA 526

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
             LLSE+     +PD++ +  L D+         A +M+ R+  +  +  + T   +L+ 
Sbjct: 527 VNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
            GK   ++   E++ S+          ++  L+D   K++
Sbjct: 587 LGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKND 626



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 31/300 (10%)

Query: 161  AFQEMEGF----ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            A+Q  + F     + P+L  YN +I    ++    +A     +MK +  +P + T++ L+
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 217  QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
              +GK     E+    K M    C PD ITYN++I   A +  L +    +  +++    
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 277  LRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAEVYIKNYM 329
                T   ++D     G L++  + ++ + +        +   L+    K+ +      +
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 330  FSRLDDLG--DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKVRWNVT 384
            F R+ + G   DL S    T LV CL      CL     +D  +    E++S  +  +  
Sbjct: 951  FKRMVNEGIRPDLKS---YTILVDCL------CLAGR--VDEALYYFNELKSTGLDPDFI 999

Query: 385  TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              N I+    K +  +    L +E+  R + PD+ T    Y++  +     G +E  KR+
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT----YNSLMLNLGLAGMVEQAKRM 1055



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + +D++K+++      + F    ++ +  + G + E    ++EM     KP    YN +I
Sbjct: 806 KAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
              +K    ++AL F  ++   +  P   TY  LI    K    +E     + M   GC 
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFGMLDKME 299
           P+   +N+LI  +   G  +     +K M+ +  R  L+S T+  ++D     G +D+  
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI--LVDCLCLAGRVDEAL 983

Query: 300 KFYKRLLNSRTPLKEDLV 317
            ++  L    T L  D +
Sbjct: 984 YYFNEL--KSTGLDPDFI 999


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P +E Y  II    K G   +A   L  M   +
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+A+G+  +Y+E  +    M   G +P   TY+ L+  FA  GL+K  E
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESE 512

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                ++   +     T  A ++AY   G  ++  K Y  +  SR     D   +  E  
Sbjct: 513 AILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC----DPDERTLEAV 568

Query: 325 IKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +  Y F+RL D       +  AS I  + + +C+ L  +        ++ ++ EM S +V
Sbjct: 569 LSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G  ++  + F EM+     P    YN +I  + + G F E +   ++M E N
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P  +TY+G+I A GK  ++++    L+ M  +   P    Y  +I+ F  A L +   
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M     +    T  ++L ++   G++ + E    RL++S  P   D      E Y
Sbjct: 478 VAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAY 537

Query: 325 IKNYMF 330
            +   F
Sbjct: 538 KQGGKF 543



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 15/340 (4%)

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSI 180
           I +  D++KN  K  +N+F    +       G  + ++R F+ M+     KP+  IY  +
Sbjct: 92  IARCLDIFKN--KLSLNDF--ALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIM 147

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I    + G  ++ L   +EM    +S    +Y  LI AYG+   Y+     L  MK D  
Sbjct: 148 ISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKI 207

Query: 241 SPDHITYNLLIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           SP  +TYN +I   A  GL  + + G +  M  + +     T   +L A    G+ D+ E
Sbjct: 208 SPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSH 358
             ++ + +            L E + K     ++ DL  ++AS     ++  + + L ++
Sbjct: 268 MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAY 327

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A   S +    V  +M++A    N  T +++L  + +   +  +R L  E+ + +  PD 
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLF-KTVEINTDP 457
            T  IL     I   G G    +K +  LF   VE N +P
Sbjct: 388 ATYNIL-----IEVFGEGGY--FKEVVTLFHDMVEENIEP 420



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+      EM      P +  YN ++  Y+K G   EA+   ++M+    +P ++TY  
Sbjct: 298 LEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  +G+   YD++      MK     PD  TYN+LI+ F   G  K +   +  M+ + 
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
           +     T   I+ A    G+ +   K  +
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQ 446



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            + G ++EA+  F +M+     P+   Y+ +++ + + G++++      EMK  N  P +
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC--AGLLKRMEGTY 267
            TY+ LI+ +G+   + E+      M  +   PD  TY  +I  FAC   GL +      
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGII--FACGKGGLHEDARKIL 445

Query: 268 KSMLTKRMHLRSSTMVAILDAY 289
           + M    +   S     +++A+
Sbjct: 446 QYMTANDIVPSSKAYTGVIEAF 467


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 1/202 (0%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           D +  + + L      RQ P   +  +      +N ++   +I  L + G  +EA+  ++
Sbjct: 160 DTYLIIFKSLFIRGGLRQAPSALEKMRE-AGFVLNAYSYNGLIHFLLQSGFCKEALEVYR 218

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            M    LKPSL+ +++++    K       +  L EM+ M L P   TY   I+  G+  
Sbjct: 219 RMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDG 278

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             DE    +K M  DGC PD +TY +LI     A  L      +  M +        T V
Sbjct: 279 KIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYV 338

Query: 284 AILDAYMNFGMLDKMEKFYKRL 305
            +LD + + G LDK+EK +  +
Sbjct: 339 TLLDKFSDCGHLDKVEKIWTEM 360



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 165/409 (40%), Gaps = 33/409 (8%)

Query: 116 SSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           S + R I  V  + + +E    R N +     I +L  +G ++EA R  + M+     P 
Sbjct: 239 SGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPD 298

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y  +I       K ++A+    +MK  +  P   TY  L+  +      D+++    
Sbjct: 299 VVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWT 358

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLK---------RMEG------TYKSMLTKRMHLR 278
            M+ DG +PD +T+ +L+     AG +          R +G      TY ++++    LR
Sbjct: 359 EMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGL--LR 416

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           ++ +   LD + N   L      Y  +L      K     K  E + K            
Sbjct: 417 ANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEK------------ 464

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            + +R     +V C   L     +   G   ++  E++S+ +  +  T N+++  Y K+ 
Sbjct: 465 -MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVG 523

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
                  LLSE+     +PD++ I  L D          A +M+ R+  +     + T  
Sbjct: 524 QVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYN 583

Query: 458 LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506
           ++LA  GK   ++   +++ S+  +       T+  L+D + K++  +L
Sbjct: 584 ILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDL 632



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           II +LC+      A   F +  +   +KP+L++YN +I G+ ++     A     EMK  
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             +P + TY+ LI A+GK    +E+      M   GC P+ ITYN++I     +  L + 
Sbjct: 820 GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              Y ++++        T   ++D  +  G LD   + +  ++
Sbjct: 880 MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMV 922



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++ +LC  G +++A+  F++++   L P L  YN +I+G  +  +  EAL   +EM+   
Sbjct: 971  LVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRG 1030

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + P   TY+ LI   G   M +E     + ++  G  P+  TYN LI+ +  +G  +   
Sbjct: 1031 IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAY 1090

Query: 265  GTYKSMLT 272
            G YK M+ 
Sbjct: 1091 GIYKKMMV 1098



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G +EEA + F  ME   L P++  YN ++ G  K G+  +A+     M    
Sbjct: 550 LIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHG 609

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEF 254
            SP + T++ L+    K    DE+D+ LKM   M    C PD +T+N +I  F
Sbjct: 610 CSPNTITFNTLLDCLCKN---DEVDLALKMFYKMTTMNCRPDVLTFNTIIHGF 659



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 113  LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEGFAL 170
            + N  +S ++ +  D++ N+     +        +I  L + G +++A   F  M  +  
Sbjct: 867  ISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGC 926

Query: 171  KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            +P+  IYN +++GY K+G  + A  F   M +  + P   +Y  L+         D+   
Sbjct: 927  RPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALH 986

Query: 231  CLKMMKLDGCSPDHITYNLLIQ 252
              + +K  G  PD + YNL+I 
Sbjct: 987  YFEKLKQAGLDPDLVAYNLMIN 1008



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 1/225 (0%)

Query: 82   QRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN 141
             RL+K +     ++  D   T   F  +I  L  S R     ++FD   +    R N   
Sbjct: 874  NRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHY-GCRPNSAI 932

Query: 142  SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
               ++    + G ++ A   F+ M    ++P L+ Y  ++      G+ ++AL +  ++K
Sbjct: 933  YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK 992

Query: 202  EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
            +  L P    Y+ +I   G+ +  +E       M+  G  PD  TYN LI      G+++
Sbjct: 993  QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIE 1052

Query: 262  RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                 Y+ +    +     T  A++  Y   G  +     YK+++
Sbjct: 1053 EAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMM 1097



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 117 SRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +S +I ++FD++  +     + N      +I  L +   +++A+  +  +      P+ 
Sbjct: 836 GKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTP 895

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             +  +I G  K G+ ++A    + M      P S  Y+ L+  YGK    D      K 
Sbjct: 896 CTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKR 955

Query: 235 MKLDGCSPDHITYNLLIQEFACAG 258
           M  +G  PD  +Y +L+     AG
Sbjct: 956 MVKEGIRPDLKSYTILVDILCIAG 979



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 41/200 (20%)

Query: 155  MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
            +E A   F+EM+     P    YNS+I  + K GK NE     +EM      P + TY+ 
Sbjct: 806  VEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNM 865

Query: 215  LIQAYGKYKMYDE-----------------------IDMCLKMMKLD------------G 239
            +I    K    D+                       ID  LK  +LD            G
Sbjct: 866  VISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYG 925

Query: 240  CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFGMLDK 297
            C P+   YN+L+  +   G +      +K M+ +  R  L+S T+  ++D     G +D 
Sbjct: 926  CRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTI--LVDILCIAGRVDD 983

Query: 298  MEKFYKRLLNSRTPLKEDLV 317
               ++++L   +  L  DLV
Sbjct: 984  ALHYFEKL--KQAGLDPDLV 1001



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G++EEA + ++E++   LKP++  YN++I GY+  G    A     +M      P + T+
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 25/321 (7%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S       D+ + +++  +  + F    II  LC +G ++ A+  F+EME   +K SL 
Sbjct: 182 KSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLV 241

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++ G  K GK+N+ +  L +M    + P   T++ LI  + K     E +   K M
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ ITYN L+  +     L         M+         T  +++  Y     +
Sbjct: 302 ITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRV 361

Query: 296 DKMEKFY----KRLLNSRTPLKEDLVRKLAE---VYIKNYMFSRLDDLG---DDLASRIG 345
           D+  K +    KR L + T     LV+   +   + I   +F  +  LG   D +   I 
Sbjct: 362 DEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGI- 420

Query: 346 RTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
                    LL   C      + ++ +  +++ +K+  ++    II+    K    +   
Sbjct: 421 ---------LLDGLCDNGKLEKALE-IFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAW 470

Query: 404 VLLSELPTRHVKPDIVTIGIL 424
            L   LP + VKP+++T  ++
Sbjct: 471 NLFCSLPCKGVKPNVMTYTVM 491



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 11/303 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC E  + EAV     M     +P++  YNSI++G  K G  + AL  L +
Sbjct: 138 FNT--LINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRK 195

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E N+     TY  +I +  +    D      K M+  G     +TYN L+     AG 
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
                   K M ++++     T   ++D ++  G L +  + YK ++             
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMES 376
           L + Y      S  +++ D +       ++V    L+   C +    +D    + R++  
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKR--VDEGMKLFRKISK 373

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N  T +I++  + +    +    L  E+ +  V PD++T GIL D    G    G
Sbjct: 374 RGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLD----GLCDNG 429

Query: 437 ALE 439
            LE
Sbjct: 430 KLE 432



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F++++   +   + +Y  II G  K GK  +A      +    + P 
Sbjct: 425 LCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 484

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  +I    K     E ++ L+ M+ DG  P+  TYN LI+
Sbjct: 485 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIR 528



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  +++++++KS++N        II  +C+ G +E+A   F  +    +KP++  Y 
Sbjct: 430 KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 489

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I G  K G  +EA + L +M+E    P   TY+ LI+A+ +          ++ MK  
Sbjct: 490 VMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 549

Query: 239 GCSPDHITYNLLIQEFACA 257
           G S D  +  ++I   + A
Sbjct: 550 GFSADASSIKMVIDMLSSA 568



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 35/290 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A+  FQEM      PSL  ++    G +   +FN  L F  +M+   ++    T + +
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIM 106

Query: 216 IQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           I  + +  K      +  K+MKL G  PD  T+N LI        +         M+   
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENG 165

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR-- 332
                 T  +I++     G                T L  DL+RK+ E  +K  +F+   
Sbjct: 166 CQPNVVTYNSIVNGICKSG---------------DTSLALDLLRKMDERNVKADVFTYST 210

Query: 333 -LDDLGDD------------LASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESA 377
            +D L  D            + ++  ++ LV    L+   C     + G+  ++++M S 
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGV-QLLKDMTSR 269

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           K+  NV T N+++  ++K    +    L  E+ T+ + P+ +T   L D 
Sbjct: 270 KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDG 319


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 131/313 (41%), Gaps = 35/313 (11%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG + EA   F+ +    +   ++ Y+ +IHG S+ GK +EA    +E++E  L P +
Sbjct: 567 CKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNA 626

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI    K    D+    L+ M + G +PD +TYN+LI     AG ++R +  +  
Sbjct: 627 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 686

Query: 270 MLTKRMHLRSSTMVAILDAYMN-------FGMLDKM----------------------EK 300
           +  + +     T  A++D Y         F +L++M                      EK
Sbjct: 687 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 746

Query: 301 FYKRLLNSRTPLKEDLV-----RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           F K L   +  L++          L E Y K+      + L +++  +      V    L
Sbjct: 747 FEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSL 806

Query: 356 LSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           + H C     G    +  EM+   V     T   +L  Y  + +   +  L  E+  + +
Sbjct: 807 IDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 866

Query: 415 KPDIVTIGILYDA 427
           +PD +T  ++ DA
Sbjct: 867 EPDKMTYYVMIDA 879



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 122/307 (39%), Gaps = 14/307 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    M  A     EM+   L P++  Y+ II+G  + G        L EM    L P +
Sbjct: 392 CRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNA 451

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  L+ A+ K    +E  M L+ M+  G  PD   YN LI  F  A  ++        
Sbjct: 452 VVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLME 511

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           ML +R+   + T  A +D Y   G ++  ++++  +L+        +   L E + K   
Sbjct: 512 MLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN 571

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTT 385
            +    +   + SR    + V    +L H   LS  G       +  E++   +  N  T
Sbjct: 572 VTEAFSVFRFILSRRVLQD-VQTYSVLIHG--LSRNGKMHEAFGIFSELQEKGLLPNAFT 628

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
            N ++    K  +      LL E+  + + PDIVT  IL D    G    G +E  K   
Sbjct: 629 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID----GLCKAGEIERAKN-- 682

Query: 446 FLFKTVE 452
            LF  +E
Sbjct: 683 -LFDDIE 688



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 5/171 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           I+   C+E   E+A+  FQEM  +GFA   S   +N++I GY K GK  EA   L EM E
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKGFASTVS---FNTLIEGYCKSGKLQEANHLLEEMIE 793

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI    K  M  E       M+     P   TY  L+  +   G +  
Sbjct: 794 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 853

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +   ++ M+ K +     T   ++DAY   G + +  K    +L    P+K
Sbjct: 854 VSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMK 904



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 1/164 (0%)

Query: 118 RSRQIPQVFDMWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +  +  +  D+++  +EK   +  +   +I   C+ G ++EA    +EM      P+   
Sbjct: 743 KEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVT 802

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y S+I    K G   EA     EM+E N+ P + TY  L+  Y       E+    + M 
Sbjct: 803 YTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 862

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
             G  PD +TY ++I  +   G +         +L K M ++S 
Sbjct: 863 AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSG 906



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 25/327 (7%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VF   KN E  R +  +   ++G L +   +E   + F  M    + P +  Y ++I  +
Sbjct: 176 VFLGPKNFE-FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAH 234

Query: 185 SKIGKFNEALLFLNEMKEM-----------------NLSPQSDTYDGLIQAYGKYKMYDE 227
            K+G   +A   L EM E                   L P   TYD LI  +   K   E
Sbjct: 235 CKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSRE 294

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
             + L  M   G  P+ ITYN LI  F   G +++       M+   +         +L+
Sbjct: 295 AKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLN 354

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGR 346
                G ++K  +  + ++             L E + +    +R  +L D++  R +  
Sbjct: 355 GVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAP 414

Query: 347 TELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           T L + + +++  C   + +G ++++REM    ++ N      ++ A+ K    +  R++
Sbjct: 415 TVLTYSV-IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 473

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGF 432
           L  +  + + PD+      Y++  IGF
Sbjct: 474 LERMREQGILPDV----FCYNSLIIGF 496



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 107/301 (35%), Gaps = 42/301 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C E    EA     EM    LKP    YN++I G+ + G   +A    +EM    
Sbjct: 282 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 341

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +      ++ L+    K  KM   +++  +MM+  G  PD  TY+LLI+       + R 
Sbjct: 342 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMME-KGVEPDSQTYSLLIEGHCRGQNMARA 400

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAE 322
                 M  +++     T   I++     G L       + + +N   P           
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP----------- 449

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
                                     +V+   + +HA          ++  M    +  +
Sbjct: 450 ------------------------NAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD 485

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           V   N +++ + K K  +  R  L E+  R ++P+  T G   D    G+   G +E+  
Sbjct: 486 VFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID----GYSKAGEMEIAD 541

Query: 443 R 443
           R
Sbjct: 542 R 542


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 124/302 (41%), Gaps = 13/302 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F     +  LC+ G  +EA   F  M     KP L  Y+ ++HGY+  G   + L   N 
Sbjct: 333 FTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNS 392

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   +      Y+ LI AYGK  M DE  +    M+  G  PD  TY  +I  F+  G 
Sbjct: 393 MEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGR 452

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL- 316
           L      +  M+   M L+  T+V  +++  +   G L K ++    +++   P    + 
Sbjct: 453 LADAMDKFNQMIA--MGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVF 510

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSH-RGIDSVVREM 374
              +     K        D+  DL   IG R +++    L+    L+        V+  M
Sbjct: 511 FNSIINSLCKEGRVVEAQDI-FDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAM 569

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY-----DARR 429
            S  +  +V T + +L  Y +        +L  E+ ++ VKP  +T GI+      D R 
Sbjct: 570 ISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRT 629

Query: 430 IG 431
           +G
Sbjct: 630 VG 631



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 149 LCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           LCE+   + A+     M  +     P++  YN++IHG+ + G+ ++A    +EM +  + 
Sbjct: 200 LCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVV 259

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P   TY   I A  K +  D+ ++ L+ M  +G  PD +TYN +I  ++  G  K   G 
Sbjct: 260 PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGM 319

Query: 267 YKSMLTKR 274
           ++ M T+R
Sbjct: 320 FREM-TRR 326



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 10/231 (4%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           L E     +AL+ L   + K   C   ++ ++          +  F +    S+      
Sbjct: 200 LCEDSRSQRALDLLHTMVKKSGGCSPNVVSYN--------TVIHGFFREGEVSKACNLFH 251

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +M +      +  ++S   I  LC+   M++A    ++M     +P    YN +IHGYS 
Sbjct: 252 EMMQQGVVPDVVTYSSY--IDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSI 309

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
           +G++ E      EM    L P   T +  + +  K+    E       M   G  PD +T
Sbjct: 310 LGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVT 369

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           Y++L+  +A  G +  M   + SM    +    S    ++DAY   GM+D+
Sbjct: 370 YSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M + I +     FNS  II  LC+EG + EA   F  +     +P +  +NS+I GY  +
Sbjct: 499 MSRGIPRPNTVFFNS--IINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLV 556

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK  +A   L+ M  + + P   TY  L+  Y +    D+  +  + M   G  P  ITY
Sbjct: 557 GKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITY 616

Query: 248 NLLIQ 252
            +++ 
Sbjct: 617 GIILH 621



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G LC     +EA+  F+++    +K ++ I N++I    K+ K  EA    + +    
Sbjct: 654 ILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATG 713

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P + TY  +I    K    +E D    +M+  GC+P     N +I+     G + +  
Sbjct: 714 LVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAG 773

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                +  K + L +ST   +L  +   G
Sbjct: 774 NYLSKVDGKTISLEASTASLMLSLFSRKG 802



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 104/302 (34%), Gaps = 27/302 (8%)

Query: 45  ISCCCLSSAPSLDY-------HSTKHTTLLVE---------SYHEHQALNALIQRLNKKV 88
           + CCC +  P++ +        +   T ++V          +     A+N L+ R+ +  
Sbjct: 126 MDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELG 185

Query: 89  SCPLQILQHDGDWTKDHFWAVIRFLKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIG 147
             P  I           +  V++ L   SRS R +  +  M K       N  +   +I 
Sbjct: 186 VEPDTI----------SYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIH 235

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
               EG + +A   F EM    + P +  Y+S I    K    ++A L L +M      P
Sbjct: 236 GFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEP 295

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY+ +I  Y     + E     + M   G  PD  T N  +      G  K     +
Sbjct: 296 DKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFF 355

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            SM  K       T   +L  Y   G +  M   +  +  +       +   L + Y K 
Sbjct: 356 DSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKR 415

Query: 328 YM 329
            M
Sbjct: 416 GM 417


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 131/313 (41%), Gaps = 35/313 (11%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG + EA   F+ +    +   ++ Y+ +IHG S+ GK +EA    +E++E  L P +
Sbjct: 576 CKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNA 635

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI    K    D+    L+ M + G +PD +TYN+LI     AG ++R +  +  
Sbjct: 636 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 695

Query: 270 MLTKRMHLRSSTMVAILDAYMN-------FGMLDKM----------------------EK 300
           +  + +     T  A++D Y         F +L++M                      EK
Sbjct: 696 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 755

Query: 301 FYKRLLNSRTPLKEDLV-----RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           F K L   +  L++          L E Y K+      + L +++  +      V    L
Sbjct: 756 FEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSL 815

Query: 356 LSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           + H C     G    +  EM+   V     T   +L  Y  + +   +  L  E+  + +
Sbjct: 816 IDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 875

Query: 415 KPDIVTIGILYDA 427
           +PD +T  ++ DA
Sbjct: 876 EPDKMTYYVMIDA 888



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 122/307 (39%), Gaps = 14/307 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    M  A     EM+   L P++  Y+ II+G  + G        L EM    L P +
Sbjct: 401 CRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNA 460

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  L+ A+ K    +E  M L+ M+  G  PD   YN LI  F  A  ++        
Sbjct: 461 VVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLME 520

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           ML +R+   + T  A +D Y   G ++  ++++  +L+        +   L E + K   
Sbjct: 521 MLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN 580

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTT 385
            +    +   + SR    + V    +L H   LS  G       +  E++   +  N  T
Sbjct: 581 VTEAFSVFRFILSRRVLQD-VQTYSVLIHG--LSRNGKMHEAFGIFSELQEKGLLPNAFT 637

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
            N ++    K  +      LL E+  + + PDIVT  IL D    G    G +E  K   
Sbjct: 638 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID----GLCKAGEIERAKN-- 691

Query: 446 FLFKTVE 452
            LF  +E
Sbjct: 692 -LFDDIE 697



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 124/290 (42%), Gaps = 7/290 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +++A R   EM      P+L  YN II G  +    +EA+     M +  
Sbjct: 221 MISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG 280

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TYD LI  +   K   E  + L  M   G  P+ ITYN LI  F   G +++  
Sbjct: 281 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 340

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M+   +         +L+     G ++K  +  + ++             L E +
Sbjct: 341 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 400

Query: 325 IKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWN 382
            +    +R  +L D++  R +  T L + + +++  C   + +G ++++REM    ++ N
Sbjct: 401 CRGQNMARAFELLDEMKKRKLAPTVLTYSV-IINGLCRCGNLQGTNAILREMVMNGLKPN 459

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
                 ++ A+ K    +  R++L  +  + + PD+      Y++  IGF
Sbjct: 460 AVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV----FCYNSLIIGF 505



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 5/210 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           I+   C+E   E+A+  FQEM  +GFA   S   +N++I GY K GK  EA   L EM E
Sbjct: 746 ILNFCCKEEKFEKALDLFQEMLEKGFASTVS---FNTLIEGYCKSGKLQEANHLLEEMIE 802

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY  LI    K  M  E       M+     P   TY  L+  +   G +  
Sbjct: 803 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 862

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           +   ++ M+ K +     T   ++DAY   G + +  K    +L    P+       L +
Sbjct: 863 VSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQ 922

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
              K   F  +  L +++     R  L  C
Sbjct: 923 ALCKKEEFFEVLKLLNEIGESGFRLGLPTC 952



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 9/193 (4%)

Query: 118 RSRQIPQVFDMWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +  +  +  D+++  +EK   +  +   +I   C+ G ++EA    +EM      P+   
Sbjct: 752 KEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVT 811

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y S+I    K G   EA     EM+E N+ P + TY  L+  Y       E+    + M 
Sbjct: 812 YTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 871

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  PD +TY ++I  +   G +         +L K M +  +   A++ A      L 
Sbjct: 872 AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQA------LC 925

Query: 297 KMEKFYK--RLLN 307
           K E+F++  +LLN
Sbjct: 926 KKEEFFEVLKLLN 938



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 122/294 (41%), Gaps = 13/294 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G + EAV  F   + F  +PSL   NS++    K  K        + M    + P   TY
Sbjct: 159 GFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTY 218

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I A+ K     +    L  M   GCSP+ +TYN++I     A LL       +SM+ 
Sbjct: 219 TNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVD 278

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLV--RKLAEVYIKNY 328
           K +     T     D  +N   ++K  +  K +L       LK + +    L + +++  
Sbjct: 279 KGLVPDLYT----YDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQG 334

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVTTA 386
              +   + D++ +      L+    LL+  C      + ++ +++EM    V  +  T 
Sbjct: 335 DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALE-IMQEMMEKGVEPDSQTY 393

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGAL 438
           ++++  + + ++      LL E+  R + P ++T  ++ +   R     GT A+
Sbjct: 394 SLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAI 447



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 132 IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IEK  I N      +I   C+ G+M EA R + EM+   + P+ + Y S++HGY  IG  
Sbjct: 801 IEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNM 860

Query: 191 NEALLFLNEMKEMNLSPQSDTY-----------------------------------DGL 215
           +E      EM    + P   TY                                   D L
Sbjct: 861 SEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDAL 920

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           IQA  K + + E+   L  +   G      T +++ + F  AG +       +SM+    
Sbjct: 921 IQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGW 980

Query: 276 HLRSSTMVAILDAYMN 291
              ++++  ++D   N
Sbjct: 981 VSNTTSLGDLVDGNQN 996


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 48/314 (15%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
            I+  + N +    +I +LC+ G + EA R  +EM    + P   IY ++I G+ K+G  
Sbjct: 215 QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNV 274

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           + A    +EM++  +SP   TY  +I    +     E D     M      PD +TY  L
Sbjct: 275 SSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTAL 334

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  +   G +K     +  ML   +     T  A+ D     G +D           +  
Sbjct: 335 IDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD-----------TAN 383

Query: 311 PLKEDLVRKLAE--VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
            L  ++ RK  E  +Y  N + + L   G+                            ID
Sbjct: 384 ELLHEMCRKGLELNIYTYNSLVNGLCKAGN----------------------------ID 415

Query: 369 SVV---REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             V   ++ME A    +  T   ++ AY K ++      LL ++  R ++P +VT  +L 
Sbjct: 416 QAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 475

Query: 426 DARRIGFDGTGALE 439
           +    GF  +G LE
Sbjct: 476 N----GFCMSGMLE 485



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 122 IPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           +   + ++  ++K +I+        +I  LC+ G + EA + F EM    L+P    Y +
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I GY K GK  EA    N+M +M L+P   TY  L     K    D  +  L  M   G
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              +  TYN L+     AG + +     K M     H  + T   ++DAY
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + AVI  L  + R  +  ++F   + K +E    +E     +I   C+EG M+EA     
Sbjct: 296 YTAVICGLCQTGRVMEADKLFHEMVCKRLEP---DEVTYTALIDGYCKEGKMKEAFSLHN 352

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M    L P++  Y ++  G  K G+ + A   L+EM    L     TY+ L+    K  
Sbjct: 353 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 412

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             D+    +K M++ G  PD +TY  L+  +  +  + R     + ML + +     T  
Sbjct: 413 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 472

Query: 284 AILDAYMNFGMLDKMEKFYKRLL 306
            +++ +   GML+  EK  K +L
Sbjct: 473 VLMNGFCMSGMLEDGEKLLKWML 495



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +  A R F EM+   + P    Y ++I G  + G+  EA    +EM    
Sbjct: 264 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 323

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P   TY  LI  Y K  KM +   +  +M+++ G +P+ +TY  L       G +   
Sbjct: 324 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKCGEVDTA 382

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
                 M  K + L   T  ++++     G +D+  K  K +  +           L + 
Sbjct: 383 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWN 382
           Y K+    R  +L   +  R  +  +V    L++  C+       + +++ M    +  N
Sbjct: 443 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 502

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            TT N ++  Y    + +    +   +  + V PD  T  IL
Sbjct: 503 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNIL 544


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 149/385 (38%), Gaps = 57/385 (14%)

Query: 127 DMWKNIEKSRINE------FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ KN+ ++ +NE      +    +I      G  +EA++ F+ M+   LKP+L  YN++
Sbjct: 202 ELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAV 261

Query: 181 IHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           I    K G  FN A    +EM    + P   T++ L+   G+  +++        M   G
Sbjct: 262 IDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRG 321

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
              D  TYN L+      G +         M  K +     T   ++D Y   G LD+  
Sbjct: 322 IEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEAL 381

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
             +  +  +   L       L  +Y K                 +GR E           
Sbjct: 382 NLFNEMKFASIGLDRVSYNTLLSIYAK-----------------LGRFEEAL-------- 416

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                    +V +EMES+ ++ +  T N +L  Y K   ++ ++ +  E+    + P+++
Sbjct: 417 ---------NVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLL 467

Query: 420 TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD-----PLVLAVYGKGHFLRYCEE 474
           T   L D    G     A+E+++     FK   +  D      L+ A+   G      E 
Sbjct: 468 TYSTLIDVYSKGGLYQEAMEVFRE----FKKAGLKADVVLYSALIDALCKNG----LVES 519

Query: 475 VYSSLEPYSREKKR---WTYQNLID 496
             S L+  ++E  R    TY ++ID
Sbjct: 520 AVSFLDEMTKEGIRPNVVTYNSIID 544



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 17/263 (6%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA+   +EME   +K     YN+++ GY K GK+ E      EMK   + P   TY
Sbjct: 410 GRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTY 469

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  Y K  +Y E     +  K  G   D + Y+ LI      GL++        M  
Sbjct: 470 STLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTK 529

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  +I+DA+   G  + +            P  E  V K++   +K    + 
Sbjct: 530 EGIRPNVVTYNSIIDAFGRSGSAECVID----------PPYETNVSKMSSSSLKVVEDAT 579

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG------IDSVVREMESAKVRWNVTTA 386
             ++GD   ++I +           HA    +RG      I +V  +M    ++ NV T 
Sbjct: 580 ESEVGDKEDNQIIKIFGQLAAEKTCHA-KKENRGRQEILCILAVFHKMHELDIKPNVVTF 638

Query: 387 NIILLAYLKMKDFKHLRVLLSEL 409
           + IL A  +   F+   +LL EL
Sbjct: 639 SAILNACSRCNSFEDASMLLEEL 661



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 10/275 (3%)

Query: 124 QVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           ++FD M +N ++  RI  FNS  ++ +    GL E A   F EM    ++  +  YN+++
Sbjct: 277 EIFDEMLRNGVQPDRIT-FNS--LLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLL 333

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               K G+ + A   ++EM   ++ P   TY  +I  Y K    DE       MK     
Sbjct: 334 DAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIG 393

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
            D ++YN L+  +A  G  +      K M +  +   + T  A+L  Y   G  +++++ 
Sbjct: 394 LDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRV 453

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           ++ +   R          L +VY K  ++    ++  +      + ++V    L+   C 
Sbjct: 454 FEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALC- 512

Query: 362 LSHRGIDSVVR---EMESAKVRWNVTTANIILLAY 393
             +  ++S V    EM    +R NV T N I+ A+
Sbjct: 513 -KNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 546


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 141/346 (40%), Gaps = 18/346 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A+I  L    R R+  ++F    N      NE     +I  LC+ G+M++A+  F  M  
Sbjct: 340 ALIDKLCKDRRFREAERLFRGMAN-RGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMRE 398

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             ++ ++  YNS+I+GY +   F++A   LNEM E  L+P + +Y  LI    +      
Sbjct: 399 KGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLAS 458

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + M  +G S +  T+  LI  F   G +      +  M+   +     T   +++
Sbjct: 459 AMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIE 518

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
            Y   G + K  + Y ++++          R L  V        +  +  DDL +     
Sbjct: 519 GYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENN---- 574

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVR---------EMESAKVRWNVTTANIILLAYLKMKD 398
               C+ L S +      G     R         EM +  V+ ++ +  +I+ A LK+ D
Sbjct: 575 ----CVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHD 630

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            + + VL  E+  + VKPD V    + D      +   AL  W ++
Sbjct: 631 GEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKM 676



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   ++   C+EG + E    + EM    +K  L  +  I++   K+    +  + 
Sbjct: 578 LNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVL 637

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMKE  + P +  +  +I  + K +   +   C   M  DGCSP+ +TY +LI     
Sbjct: 638 FREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCK 697

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +G L   +   + ML  R    S T    LD   N G L+K +  +  +L
Sbjct: 698 SGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATIL 747



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 3/135 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEA-VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N F     +  L  EG +E+A V     +EG     +   +N++I G+ K G+   A+  
Sbjct: 719 NSFTYNCFLDFLANEGELEKAKVLHATILEG--CLANTVTFNTLIKGFCKAGQIQGAIDL 776

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           +    E    P   +Y  +I    K    ++       M   G  PD + YN+LI+    
Sbjct: 777 MQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNI 836

Query: 257 AGLLKRMEGTYKSML 271
            G   +  G Y  M+
Sbjct: 837 HGEFDKGLGIYSDMV 851


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 34/287 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +    +I  +C+EG +EEA   F +M    L P+   YN++I GY   G    A  + 
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM +  + P   TY+ L+ A        E D  +K M+  G  PD ITYN+LI  ++  
Sbjct: 378 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 437

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K+    +  ML+K +     T  +++        + + +  ++++L+        + 
Sbjct: 438 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 497

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             + + +  N                 G  E  + L                 ++EM+  
Sbjct: 498 NAMVDGHCAN-----------------GNVERAFML-----------------LKEMDRK 523

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            V  +  T N ++    +    +  R+LL E+  R +KPD ++   L
Sbjct: 524 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 570



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            + + F + K +++  +  +E     ++   C EG +EEA     EM+   +KP    YN
Sbjct: 509 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYN 568

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GY + G   +A    +EM  +  +P   TY+ LI+   K +  D  +  LK M   
Sbjct: 569 TLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 628

Query: 239 GCSPDHITYNLLIQ 252
           G SPD  TY  LI+
Sbjct: 629 GISPDDSTYLSLIE 642



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 38/268 (14%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A   + EM    +  ++  +N +++   K GK  +A  F+  M+ +   P   +Y+ 
Sbjct: 230 MEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNT 289

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  Y      +     L  M++ G  PD  TY  LI      G L+   G +  M+   
Sbjct: 290 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 349

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   + T   ++D Y N G L++   +           ++++V+K               
Sbjct: 350 LVPNAVTYNTLIDGYCNKGDLERAFSY-----------RDEMVKK--------------- 383

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLA 392
                     G    V    LL HA  +  R    D +++EM    +  +  T NI++  
Sbjct: 384 ----------GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           Y +  + K    L +E+ ++ ++P  VT
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVT 461


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 135/318 (42%), Gaps = 45/318 (14%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEG------F 168
            R R I ++ ++   +EK +I         ++  LC+   ++EA++ F  + G       
Sbjct: 292 GRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWV 351

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYGKYKMYDE 227
            ++P + ++N++I G  K+GK  + L  L EMK  N++ P + TY+ LI  + K   +D 
Sbjct: 352 GVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDR 411

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + M  +G  P+ IT N L+      G + R    +  M  K +   ++T  A++ 
Sbjct: 412 AHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALIS 471

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           A+     +++  + ++ +L+S            A VY                       
Sbjct: 472 AFCGVNNINRAMQCFEEMLSSGCSPD-------AVVYYS--------------------- 503

Query: 348 ELVWCLRLLSHACLLSHRGIDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                  L+S  C+       S VV +++ A    + +  N+++  + K K  + +  LL
Sbjct: 504 -------LISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELL 556

Query: 407 SELPTRHVKPDIVTIGIL 424
           +E+    VKPD +T   L
Sbjct: 557 TEMEETGVKPDTITYNTL 574



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 20/306 (6%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R N      +I    + G  + A   F++M    ++P++   N+++ G  K G+ + A+
Sbjct: 389 NRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAV 448

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            F NEMK   L   + TY  LI A+      +    C + M   GCSPD + Y  LI   
Sbjct: 449 EFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGL 508

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             AG +         +      L  S    ++     F    K+E+ Y+ L    T ++E
Sbjct: 509 CIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISG---FCKKKKLERVYELL----TEMEE 561

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGD-DLASRIGRTELVWCLR--LLSHACLL----SHRGI 367
             V+     Y  N + S L   GD   AS++    +   LR  ++++  ++    S + +
Sbjct: 562 TGVKPDTITY--NTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNV 619

Query: 368 DS---VVREM-ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
           D    +  EM  ++KV  N    NI++ A  +  D      L+ ++  + V+P+  T   
Sbjct: 620 DEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNA 679

Query: 424 LYDARR 429
           +    R
Sbjct: 680 ILKGVR 685



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 123/306 (40%), Gaps = 18/306 (5%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N E  + N      ++  LC+ G +  AV  F EM+G  LK +   Y ++I  +  +   
Sbjct: 420 NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNI 479

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           N A+    EM     SP +  Y  LI         ++  + +  +KL G S D   YN+L
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVL 539

Query: 251 IQEFACAGLLKRMEGTYKSM---LTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLL 306
           I  F     L+R+      M     K   +  +T+++ L    +F    K MEK  K   
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKE-- 597

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA---CLLS 363
                L+  +V   A   I  Y   +  D G  +   +  T  V    ++ +     L  
Sbjct: 598 ----GLRPSVVTYGA--IIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCR 651

Query: 364 HRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +  +D   S++ +M+  +VR N TT N IL      K       L+  +     +PD +T
Sbjct: 652 NNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYIT 711

Query: 421 IGILYD 426
           + +L +
Sbjct: 712 MEVLTE 717



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           II   C +  ++E ++ F EM   + + P+  IYN +I    +    + A+  + +MK  
Sbjct: 609 IIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVK 668

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P + TY+ +++     KM  +    +  M  + C PD+IT  +L +  +  G ++++
Sbjct: 669 RVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKL 728

Query: 264 E 264
           +
Sbjct: 729 K 729


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+  K+I   + N      ++     EGL E+A   F+EM+    +P +  YN+++  
Sbjct: 301 KVFNEMKSI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 359

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           YS+ G    A    + M+ M   P   +Y+ L+ AYG+  ++++ +   + +K  G SP 
Sbjct: 360 YSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPT 419

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             ++ LL+   A +G   R E     +    +   +  + A+L+AY   G LD ME+ + 
Sbjct: 420 MKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFA 479

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLL 362
             +  R              Y +     R++     +A+R    ++V W  R+ ++A   
Sbjct: 480 -AMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRK 538

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            +     +V EM  A    +  TA ++L A    +  + +  ++  +   H KP
Sbjct: 539 EYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSM---HKKP 589



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 111/287 (38%), Gaps = 3/287 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM    + P+  +YN+ + G  K     +A+     MK       +
Sbjct: 221 CNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 280

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +T+  +I  YGK K           MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 281 ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 340

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G+     + +  + +            L + Y +  +
Sbjct: 341 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 400

Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               + + ++L  R +  T     L L +HA   +    + V+ ++  + +  +    N 
Sbjct: 401 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 460

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG 434
           +L AY +      +  L + +  R    D+ T  +  +A  R G+ G
Sbjct: 461 MLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAGYVG 506



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 13/283 (4%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +  P    Y+ LI++YGK +  ++ +     +    C P   TY LL++ +  AG L R 
Sbjct: 170 SFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRA 229

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           EG    M    +   ++   A LD  +     +K  + Y+R+   R     +    +  V
Sbjct: 230 EGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINV 289

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKV 379
           Y K         + +++ S IG    +     L +A   +  G+    + V  EM+ A  
Sbjct: 290 YGKAKQPMSSMKVFNEMKS-IGCKPNICTYTALVNA--FAREGLCEKAEEVFEEMQQAGH 346

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF--DGTG 436
             +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G   D   
Sbjct: 347 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEA 406

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
             E  K+ G    +  + +  L+LA + +      CEEV + L
Sbjct: 407 VFEELKQRGM---SPTMKSHMLLLAAHARSGNATRCEEVMAQL 446



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 118/301 (39%), Gaps = 46/301 (15%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDM----CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           N+    + +D L+    +++M  + D+    C  ++      PD I YNLLI+ +     
Sbjct: 131 NIPSTHNLFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQ 190

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L + E  Y ++L  +      T   +L AY N G L + E          + ++E  +  
Sbjct: 191 LNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI-------SEMREHGIPP 243

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
            A VY      + LD                    LL   C  + + ++ V + M+  + 
Sbjct: 244 NATVY-----NAYLDG-------------------LLKARC--TEKAVE-VYQRMKRERC 276

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG--- 436
           R N  T  +++  Y K K       + +E+ +   KP+I T   L +A    F   G   
Sbjct: 277 RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNA----FAREGLCE 332

Query: 437 -ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            A E+++ +       ++     ++  Y +    +   E++S ++    E  R +Y  L+
Sbjct: 333 KAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 392

Query: 496 D 496
           D
Sbjct: 393 D 393


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 125/305 (40%), Gaps = 36/305 (11%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R++    D +K I +   R N      ++  LC  G   +A R  ++M    + P++ 
Sbjct: 202 KTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVI 261

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y++++  + K GK  EA     EM  M++ P   TY  LI     +   DE +    +M
Sbjct: 262 TYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC PD ++YN LI  F  A  ++     ++ M  + +   + T   ++  +   G +
Sbjct: 322 VSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDV 381

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           DK ++F+ ++         D      +++  N +   L D G                 L
Sbjct: 382 DKAQEFFSQM---------DSFGVSPDIWTYNILLGGLCDNG-----------------L 415

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           L  A +        +  +M+ +++  ++ T   ++    K    +    L   L  + +K
Sbjct: 416 LEKALV--------IFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLK 467

Query: 416 PDIVT 420
           PDIVT
Sbjct: 468 PDIVT 472



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G +++A   F +M+ F + P +  YN ++ G    G   +AL+   +M++  +     
Sbjct: 377 QVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIV 436

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  +IQ   K    ++       + L G  PD +TY  ++      GL   +E  Y  M
Sbjct: 437 TYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKM 496

Query: 271 LTKRMHLRSSTMVAILDA 288
             + + +++ +M+ + D 
Sbjct: 497 KQEGL-MKNDSMLCLGDG 513



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 110/282 (39%), Gaps = 38/282 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C    + +AV    +M     +P +  YN+II    K  + N+AL F  E+    
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKG 220

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L+        +++    L+ M     +P+ ITY+ L+  F   G +   +
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+  RM +    +                   Y  L+N        L  ++ E  
Sbjct: 281 EIFEEMV--RMSIDPDIVT------------------YSSLINGLC-----LHDRIDEA- 314

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
             N MF       D + S+    ++V    L++  C  + R  D   + R+M    +  N
Sbjct: 315 --NQMF-------DLMVSKGCFPDVVSYNTLINGFC-KAKRVEDGMKLFRKMSQRGLVNN 364

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             T N ++  + ++ D    +   S++ +  V PDI T  IL
Sbjct: 365 TVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNIL 406



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC+ GL+E+A+  F++M+   +   +  Y ++I G  K GK  +A      +    
Sbjct: 406 LLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKG 465

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           L P   TY  ++       +  E++     MK +G
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 2/204 (0%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W    F+    +S+++ +  D++ ++++  I  NE     +I   C+ G ++EA+   + 
Sbjct: 495 WTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLER 554

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+   YNS+I+G  K GK  E L  +  M +M + P   TY  LI+   +   
Sbjct: 555 MHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGD 614

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D  +     M   G  PD  TY   I  +  +G +K  EG    M+   +   S T   
Sbjct: 615 FDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTL 674

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNS 308
           ++ AY   G+        KR+L++
Sbjct: 675 LISAYERLGLAYDAFNVLKRMLDA 698



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 34/271 (12%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           CEEG +E A+     ME    +P+   YN +I G+SK    ++A+  L++M E  L+P  
Sbjct: 400 CEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSL 459

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI    K   +D     L ++K +G  PD  TY++ I     +  ++     + S
Sbjct: 460 VTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNS 519

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           +  K +        A++D +   G +D+     +R+ +      ED +   +      Y 
Sbjct: 520 LKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHS------EDCLPNSSTYNSLIYG 573

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
             +   + + L                            S+V  M    V+  V T  I+
Sbjct: 574 VCKEGKVQEGL----------------------------SMVENMSKMGVKPTVATYTIL 605

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   L+  DF H   + +++ +   KPD+ T
Sbjct: 606 IEEMLREGDFDHANRVFNQMVSFGHKPDVYT 636



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+M  N +  R NE +   II  LCE G ++E +  F++M      P++  Y  IIH 
Sbjct: 270 KVFNMMPN-KGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHA 328

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
                +  E +   NEM+E +  P   TY  ++ A  K +  DE    L  M   G  P 
Sbjct: 329 LFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPS 388

Query: 244 HITYNLLIQEFACAG 258
            +TYN LI+ +   G
Sbjct: 389 VVTYNALIRGYCEEG 403



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +  EG  + A R F +M  F  KP +  Y + IH Y   G   EA   +  M E  
Sbjct: 605 LIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAG 664

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P S TY  LI AY +  + YD  ++ LK M   GC P H  +N LI   A   L+  M
Sbjct: 665 VMPDSLTYTLLISAYERLGLAYDAFNV-LKRMLDAGCDPSHPIWNNLIWYKASPFLMLLM 723

Query: 264 EG 265
            G
Sbjct: 724 CG 725



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            +++ ML    +++E  R + EM    + P++   N++++ YSK+G   EA L+++++ +
Sbjct: 183 NELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQ 242

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             LSP S TY  LI  Y +    +       MM   GC  + ++Y  +I     AG +  
Sbjct: 243 AGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDE 302

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDA-YMNFGMLDKMEKF 301
               +K M     +    T   I+ A + N   L+ M+ F
Sbjct: 303 GISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLF 342



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NE    ++I    +   + +A+    +M    L PSL  YNS+IH   K G F+ A  
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L+ +KE  L P   TY   I    K K  +E       +K  G   + + Y  LI    
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHC 540

Query: 256 CAG-------LLKRM 263
            AG       LL+RM
Sbjct: 541 KAGKIDEAISLLERM 555



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 65/165 (39%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I + C+ G  + A +    ++   L P    Y+  I    K  +  EA    N +KE
Sbjct: 463 NSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKE 522

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             +      Y  LI  + K    DE    L+ M  + C P+  TYN LI      G ++ 
Sbjct: 523 KGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQE 582

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                ++M    +    +T   +++  +  G  D   + + ++++
Sbjct: 583 GLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVS 627


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 5/208 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + A+IR L  + +   IPQ   ++K +       +      +I  LC+ G +  AVR F+
Sbjct: 142 YTALIRGLLQAGK---IPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFK 198

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME   L P+  +Y+++IHG  K  K + AL  L +MK+   +P + TY+ LI    K  
Sbjct: 199 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 258

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
                      M   GC PD  TYN+LI  F  AG      G +  M + R      T  
Sbjct: 259 DVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYG 318

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            ++        L K   +Y+ +     P
Sbjct: 319 TLISGLCKRRQLTKASLYYQHMKERGCP 346



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 7/274 (2%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EAV   +++      P++  YN++++G  K+G+  EA+  L ++ +   +P   TY  
Sbjct: 50  IQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 109

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI   GK K   E     K M   G + D + Y  LI+    AG + +    YK+M ++ 
Sbjct: 110 LIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQG 169

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYK----RLLNSRTPLKEDLVRKLAEVYIKNYMF 330
                 T+  ++D     G +    + +K    R L     +   L+  L +    +   
Sbjct: 170 CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 229

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             L  +     +    T  +    L     + + R   +   EM  A  + +V T NI++
Sbjct: 230 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAAR---AFFDEMLEAGCKPDVYTYNILI 286

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             + K  +      +  ++ +    P++VT G L
Sbjct: 287 SGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTL 320



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R++    +M   ++K+    +      +I  LC+ G +  A   F EM     KP + 
Sbjct: 221 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVY 280

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+ K G  + A    ++M     SP   TY  LI    K +   +  +  + M
Sbjct: 281 TYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHM 340

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLK 261
           K  GC PD   Y+ L+     +G L+
Sbjct: 341 KERGCPPDSFVYSSLVDGLCKSGKLE 366



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 29/295 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G++ +A    QE         +  Y +I+   +K  K  EA+  + ++    
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            +P   TY+ L+    K    +E ID+  K++  +GC+PD +TY  LI      G  KR 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NGCTPDVVTYTSLIDGL---GKKKRS 120

Query: 264 EGTY---KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE------ 314
              Y   K M ++ + L +    A++   +  G + +    YK  + S+  + +      
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKT-MTSQGCVPDVVTLST 179

Query: 315 --DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
             D + K   +     +F  ++  G      +   E+V+    L H  L   R +D  + 
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARG------LAPNEVVY--SALIHG-LCKARKMDCALE 230

Query: 373 ---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              +M+ A    +  T NI++    K  D    R    E+     KPD+ T  IL
Sbjct: 231 MLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285


>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
 gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 386

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++  +G +  A+  F +M     KP   +YNS+I    H   K     +AL +  +
Sbjct: 16  KLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEK 75

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK +    P   TY+ L++A+ +     ++DM  K +     SPD  TYN ++  +   G
Sbjct: 76  MKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNG 135

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++K ME     M + +      T   ++D+Y      DKME+ +K LL S    KE    
Sbjct: 136 MIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS----KERPTH 191

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVR--- 372
                 I NY  +RL +  + +  ++   EL +    ++  CL+   +H    S  R   
Sbjct: 192 PTFNSMITNYGRARLREKAESVVEKM--EELGFKPNYVTQECLIIMYAHCDCVSKARQVF 249

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ +++ + ++++ N +L AY           LL     + V P+  T  +LY A
Sbjct: 250 DELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKA 305



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 6/267 (2%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+     +P++  YN ++  +++ G   +  +   ++ E  +SP   TY+
Sbjct: 66  LAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYN 125

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK   C PD IT+N+LI  +       +ME  +KS+L  
Sbjct: 126 GVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS 185

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFS 331
           +      T  +++  Y    + +K E   +++       K + V +  L  +Y      S
Sbjct: 186 KERPTHPTFNSMITNYGRARLREKAESVVEKM--EELGFKPNYVTQECLIIMYAHCDCVS 243

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIIL 390
           +   + D+L +   +  L     +L   C+   H   D ++       V  N +T  ++ 
Sbjct: 244 KARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLY 303

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPD 417
            AY K  D   ++ LL  +  + + P+
Sbjct: 304 KAYTKANDKLLVQKLLKRMNKQGIVPN 330



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 90/213 (42%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K IE+ +        ++    + G  ++    F++++   + P +  YN ++  Y 
Sbjct: 73  FEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYG 132

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YG+ + +D+++   K +      P H 
Sbjct: 133 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 192

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E   + M          T   ++  Y +   + K  + +  L
Sbjct: 193 TFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDEL 252

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           + S+T +    +  + E Y  N + +  D L D
Sbjct: 253 VTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLD 285



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/187 (16%), Positives = 88/187 (47%), Gaps = 3/187 (1%)

Query: 109 VIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++R    +  ++Q+  +F D+ +++    +  +N   ++    + G+++E       M+ 
Sbjct: 92  LLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNG--VLDAYGKNGMIKEMESVLVRMKS 149

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P +  +N +I  Y +   F++       +      P   T++ +I  YG+ ++ ++
Sbjct: 150 TQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREK 209

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  ++ M+  G  P+++T   LI  +A    + +    +  ++T +  +  S++ ++L+
Sbjct: 210 AESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLE 269

Query: 288 AYMNFGM 294
           AY   G+
Sbjct: 270 AYCMNGL 276



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           R   T + + + L + A     + +D + ++++ + V  +V T N +L AY K    K +
Sbjct: 81  RCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEM 140

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEMWKRIGFLFKTVEINTDPL-- 458
             +L  + +   +PD++T  IL D+  R+  FD     +M +    L ++ E  T P   
Sbjct: 141 ESVLVRMKSTQCRPDVITFNILIDSYGRKQTFD-----KMEQVFKSLLRSKERPTHPTFN 195

Query: 459 -VLAVYGKGHFLRYCEEVYSSLE 480
            ++  YG+       E V   +E
Sbjct: 196 SMITNYGRARLREKAESVVEKME 218


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +++AVR   EM    LK +L I NS+I+GY K G+ +EA   +  M + N
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P S +Y+ L+  Y +     E  ++C KM++ +G  P  +TYN L++     G     
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-----NSRTPLKEDL-- 316
              +  M+   +         +LD        +     +K +L      SR      +  
Sbjct: 457 LQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-EME 375
           + K+ ++     +F ++ DLG        RT       L+   C  S+ G    V+  ME
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRT-------LIDGYCKASNVGQAFKVKGAME 569

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +  ++   N ++    K +       LL+E+  R + P+IVT G L D 
Sbjct: 570 REXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDG 621



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 128 MWKNI-----EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +WK+I      KSRI  FN+  +I  LC+ G M EA   F +M+     P    Y ++I 
Sbjct: 494 LWKDILARGFTKSRIT-FNT--MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY K     +A      M+   +SP  + Y+ LI    K +   E    L  M + G +P
Sbjct: 551 GYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTP 610

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH---LRSSTMVAIL 286
           + +TY  LI  +   G+L +   +Y  M    +    +  STMV+ L
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 657



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 8/202 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           FLK+  R   I ++ D      K+ +  N       I  LC+ G +++A R F  +    
Sbjct: 685 FLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG 744

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P    Y ++IHGYS  G  +EA    +EM    L P   TY+ LI    K +  D   
Sbjct: 745 FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQ 804

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKRMHLRSSTMVAIL 286
                +   G  P+ +TYN LI  +   G    M+  +K    M+ + +     T  A++
Sbjct: 805 RLFHKLHQKGLFPNVVTYNTLIDGYCKIG---NMDAAFKLKDKMIEEGISPSVVTYSALI 861

Query: 287 DAYMNFGMLDKMEKFYKRLLNS 308
           +     G +++  K   +++ +
Sbjct: 862 NGLCKHGDIERSMKLLNQMIKA 883



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 73/421 (17%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VFDM                I+ +  E+GL + A+  F  M      PSL   NS+++
Sbjct: 156 PTVFDM----------------ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLN 199

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K G+ + A     +M  + + P       ++ A+ K    DE    +K M+  G  P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           + +TY+ LI  +   G ++  +G  K M  K +     T   ++  Y     +D+ EK  
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDD---LGDDLASRIG-RTELVWCLRLLS 357
            R +     L  D   +   V I  Y  + ++DD   L D++  R+G +T L  C  L++
Sbjct: 320 -RGMQEEAALVPD--ERAYGVLIDGYCRTGKIDDAVRLLDEML-RLGLKTNLFICNSLIN 375

Query: 358 HACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
             C    RG     + V+  M    ++ +  + N +L  Y +         L  ++    
Sbjct: 376 GYC---KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 432

Query: 414 VKPDIVT----------IGILYDARRI--------------GF----DG-------TGAL 438
           ++P ++T          +G   DA +I              G+    DG        GA 
Sbjct: 433 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGAS 492

Query: 439 EMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            +WK I   GF    +  NT    L   GK   +   EE++  ++         TY+ LI
Sbjct: 493 TLWKDILARGFTKSRITFNTMISGLCKMGK---MVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 496 D 496
           D
Sbjct: 550 D 550



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++ A R F ++    L P++  YN++I GY KIG  + A    ++M E  
Sbjct: 790 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEG 849

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           +SP   TY  LI    K+   +     L  M   G     I Y  L+Q
Sbjct: 850 ISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 127/310 (40%), Gaps = 41/310 (13%)

Query: 120 RQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++   ++ +   +E++ +N     FN+  +I    E G ME A+  F +M+   +KP+  
Sbjct: 62  KRFDSIYSIISQVEENGMNPDSIFFNA--VINAFSESGNMESAMETFWKMQENGMKPTTS 119

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            YN++I GY   GK  E++  L  M +E N+ P   TY+ L++A+   K   E    +  
Sbjct: 120 TYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYK 179

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M   G  PD +TYN +   +A  G L + EG    M    +     T   I+  Y   G 
Sbjct: 180 MIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGR 239

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
           + +  +F  R+             K   ++    +F+ L                     
Sbjct: 240 IREALRFAYRM-------------KELGIHPNLVIFNSL--------------------- 265

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +     ++   G+D V+  ME   V+ +V T + I+ A+      +  R +  ++    +
Sbjct: 266 IKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGI 325

Query: 415 KPDIVTIGIL 424
           +PD     IL
Sbjct: 326 EPDAHAYSIL 335



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 75/158 (47%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++G +++A     EM+   ++P+      I+ GY K G+  EAL F   MKE+ + P   
Sbjct: 201 QKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLV 260

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            ++ LI+ +      D +D  L +M+  G  PD IT++ ++  ++ AG +++    +  M
Sbjct: 261 IFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDM 320

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +   +   +     +   Y+     +K E+    ++ S
Sbjct: 321 VKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKS 358



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 72/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     I+   C+EG + EA+R    M+   + P+L I+NS+I G+  I   +     L
Sbjct: 223 NERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVL 282

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M+E  + P   T+  ++ A+      ++       M   G  PD   Y++L + +  A
Sbjct: 283 NLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRA 342

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              ++ E    +M+             ++  + + G +D   + + ++
Sbjct: 343 QEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKM 390



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ME+    F +M    ++P    Y+ +  GY +  +  +A   L  M +    P    +
Sbjct: 308 GFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIF 367

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I  +      D        M   G SP+  T+  LI  FA A    + E   + M  
Sbjct: 368 TTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTE 427

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
             +    STM+ + +A+   GM     K   RLL +R
Sbjct: 428 FEVQPEKSTMLLVAEAWRATGMT----KEANRLLGTR 460



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E+A      M     +P++ I+ ++I G+   GK + A+   ++M +  +SP   T++ L
Sbjct: 346 EKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETL 405

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK---RMEGT--YKSM 270
           I  + + +   + +  L++M      P+  T  L+ + +   G+ K   R+ GT   K M
Sbjct: 406 IWGFAEARQPWKAEEILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLLGTRNRKEM 465

Query: 271 LTKRMHLRSSTMVAILD 287
             ++  L     V  L+
Sbjct: 466 TNRKEALEKEIPVGNLE 482


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 34/287 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +    +I  +C+EG +EEA   F +M    L P+   YN++I GY   G    A  + 
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM +  + P   TY+ L+ A        E D  +K M+  G  PD ITYN+LI  ++  
Sbjct: 356 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 415

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K+    +  ML+K +     T  +++        + + +  ++++L+        + 
Sbjct: 416 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 475

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             + + +  N                 G  E  + L                 ++EM+  
Sbjct: 476 NAMVDGHCAN-----------------GNVERAFML-----------------LKEMDRK 501

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            V  +  T N ++    +    +  R+LL E+  R +KPD ++   L
Sbjct: 502 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 548



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            + + F + K +++  +  +E     ++   C EG +EEA     EM+   +KP    YN
Sbjct: 487 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYN 546

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GY + G   +A    +EM  +  +P   TY+ LI+   K +  D  +  LK M   
Sbjct: 547 TLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 606

Query: 239 GCSPDHITYNLLIQ 252
           G SPD  TY  LI+
Sbjct: 607 GISPDDSTYLSLIE 620



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 38/268 (14%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A   + EM    +  ++  +N +++   K GK  +A  F+  M+ +   P   +Y+ 
Sbjct: 208 MEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNT 267

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  Y      +     L  M++ G  PD  TY  LI      G L+   G +  M+   
Sbjct: 268 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 327

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   + T   ++D Y N G L++   +           ++++V+K               
Sbjct: 328 LVPNAVTYNTLIDGYCNKGDLERAFSY-----------RDEMVKK--------------- 361

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLA 392
                     G    V    LL HA  +  R    D +++EM    +  +  T NI++  
Sbjct: 362 ----------GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           Y +  + K    L +E+ ++ ++P  VT
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVT 439


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 117/270 (43%), Gaps = 5/270 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F+EM+    +P +  YN+++  YS+ G    A    + M+ M 
Sbjct: 318 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ A+G+  ++ E +   + +K  G  P   ++ LL+   A +G + R E
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                +    +   +  + A+L+AY   G LD ME+ +  +      +          V 
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVM 497

Query: 325 IKNY----MFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +  Y       R++     LA+R    ++V W  R+ ++A    +     V  EM  A  
Sbjct: 498 VNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGC 557

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
             +  TA ++L A    +  + ++ ++  +
Sbjct: 558 YPDAGTAKVLLAACSDERQVEQVKAIVRSM 587



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/339 (18%), Positives = 128/339 (37%), Gaps = 48/339 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM+   + P+  +YN+ + G  K     +A+     MK+      +
Sbjct: 218 CGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNT 277

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY  +I  YGK           + MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 278 ETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEE 337

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G+     + +                      +  +M
Sbjct: 338 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS---------------------LMEHM 376

Query: 330 FSRLDDLG-DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               D    + L    GR  L              H+  ++  +E++   +R  + +  +
Sbjct: 377 GCEPDRASYNILVDAFGRAGL--------------HQEAEAAFQELKQQGMRPTMKSHML 422

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---- 444
           +L A+ +  +      ++++L    ++PD   +  + +A    +   G L+  +R+    
Sbjct: 423 LLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA----YGRAGRLDDMERLFAAM 478

Query: 445 ----GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
               G +    + +T  +++  YG+  +L   E  + SL
Sbjct: 479 ERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSL 517



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 15/288 (5%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++  +  P    Y+ LI AYG+ +   E +     +    C P   TY LL++ +  +G 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L R EG    M    +   ++   A LD  +     +K  + Y+R+   R     +    
Sbjct: 223 LHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTL 282

Query: 320 LAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREM 374
           +  VY K N   S L    +     +G    +     L +A   +  G+    + V  EM
Sbjct: 283 MINVYGKANQPMSSLRVFRE--MKSVGCKPNICTYTALVNA--FAREGLCEKAEEVFEEM 338

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF- 432
           + A    +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G  
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLH 398

Query: 433 -DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
            +   A +  K+ G       + +  L+L+ + +   +  CEEV + L
Sbjct: 399 QEAEAAFQELKQQGM---RPTMKSHMLLLSAHARSGNVARCEEVMAQL 443



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 102/276 (36%), Gaps = 48/276 (17%)

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           I +C  +++     PD I YNLLI  +     L   E  Y ++L  R      T   +L 
Sbjct: 156 ITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLR 215

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           AY   G L + E     +  +  P         A VY      + LD             
Sbjct: 216 AYCGSGQLHRAEGVISEMQRNGIP-------PTATVY-----NAYLDG------------ 251

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM-KDFKHLRVLL 406
                  LL   C  S + ++ V + M+  + R N  T  +++  Y K  +    LRV  
Sbjct: 252 -------LLKARC--SEKAVE-VYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRV-F 300

Query: 407 SELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA----- 461
            E+ +   KP+I T   L +A    F   G  E  + +    +  +   +P V A     
Sbjct: 301 REMKSVGCKPNICTYTALVNA----FAREGLCEKAEEV--FEEMQQAGHEPDVYAYNALM 354

Query: 462 -VYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             Y +    +   E++S +E    E  R +Y  L+D
Sbjct: 355 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVD 390


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 51/319 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L  EGL+++    F EM    +  ++ +Y ++I+ Y + G+F+ +L  LN MK+  
Sbjct: 142 MITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQER 201

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I A  +  + ++ +      M+ +G  PD ITYN L+   A  GL    
Sbjct: 202 VSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEA 261

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAY----MNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           E  +++M         S +V  ++ Y      FG L+++EK              +L+R+
Sbjct: 262 EMVFRTM-------NESGIVPDINTYSYLVQTFGKLNRLEKV------------SELLRE 302

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +              + G +L        L     L ++A L S +    V R+M++A  
Sbjct: 303 M--------------ESGGNLPDITSYNVL-----LEAYAELGSIKEAMDVFRQMQAAGC 343

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             N  T +++L  Y K   +  +R +  E+   +  PD  T  IL     I   G G   
Sbjct: 344 VANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNIL-----IQVFGEGGY- 397

Query: 440 MWKRIGFLF-KTVEINTDP 457
            +K +  LF   VE N +P
Sbjct: 398 -FKEVVTLFHDMVEENVEP 415



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P++E Y  +I    K G + +A   L  M E  
Sbjct: 388 LIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKG 447

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+A+G+  +Y+E  +    M   G +P   TYN  I  FA  GL K  E
Sbjct: 448 IVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAE 507

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     +   ++ A+   G  ++  K Y  +  +     E  +  +  VY
Sbjct: 508 AILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVY 567

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHA 359
               +    ++   ++ AS I  + + +CL L  +A
Sbjct: 568 CSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYA 603



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+     +EME     P +  YN ++  Y+++G   EA+    +M+       + TY  
Sbjct: 293 LEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSV 352

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  YGK+  YD++      MK+    PD  TYN+LIQ F   G  K +   +  M+ + 
Sbjct: 353 LLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEEN 412

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEK 300
           +     T   ++ A    G+ +  +K
Sbjct: 413 VEPNMETYEGLIFACGKGGLYEDAKK 438



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 3/227 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRA-FQEMEGFALKPS 173
            R+ Q     ++   +++ R++        +I      GL  E +   F EM    ++P 
Sbjct: 182 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 241

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN+++   +  G  +EA +    M E  + P  +TY  L+Q +GK    +++   L+
Sbjct: 242 VITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLR 301

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G  PD  +YN+L++ +A  G +K     ++ M        ++T   +L+ Y   G
Sbjct: 302 EMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHG 361

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
             D +   +  +  S T         L +V+ +   F  +  L  D+
Sbjct: 362 RYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM 408



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 8/260 (3%)

Query: 61  TKHTTLLVESYHEHQALNALIQRLNK--KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR 118
           T + + +V   + +  L     +LN+  KVS  L+ ++  G+      + V+  L+  + 
Sbjct: 267 TMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVL--LEAYAE 324

Query: 119 SRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
              I +  D+++ ++ +    N      ++ +  + G  ++    F EM+     P    
Sbjct: 325 LGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGT 384

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN +I  + + G F E +   ++M E N+ P  +TY+GLI A GK  +Y++    L  M 
Sbjct: 385 YNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMN 444

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  P    Y  +I+ F  A L +     + +M     +    T  + + A+   G+  
Sbjct: 445 EKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYK 504

Query: 297 KMEKFYKRLLNSRTPLKEDL 316
           + E    R+  + + LK D+
Sbjct: 505 EAEAILSRM--NESGLKRDV 522



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 14/154 (9%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F  VI+  +      Q  +    +  +EK+    NE   + ++ + C  GL++E+   FQ
Sbjct: 525 FNGVIKAFRQGG---QYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQ 581

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           E++   + PS+  Y  ++  Y+K  + N+A   ++EM  M +   SD + G+ Q   K  
Sbjct: 582 EIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMRV---SDIHQGIGQMI-KGD 637

Query: 224 MYDE-----IDMCLKMMKLDGCSPDHITYNLLIQ 252
             DE     ++     +  +GC      YN L++
Sbjct: 638 FDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLE 671


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 118/281 (41%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + GL+EEA+    +M    +KP +  Y +++ G+ K GK + A+    EM+ + 
Sbjct: 340 LISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVG 399

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ LI+ +G    + E+      +KL  CSPD +T+N L+  F   G+  ++ 
Sbjct: 400 CKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVS 459

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G +K M          T   ++ AY   G  D+    YK +L +           +    
Sbjct: 460 GIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAAL 519

Query: 325 IKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            +  ++ + + +  ++   R    EL +   L ++A       +++   E+ S  V  + 
Sbjct: 520 ARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHA 579

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                ++L   K            EL  R + PDI T+  +
Sbjct: 580 VLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAM 620



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/319 (17%), Positives = 147/319 (46%), Gaps = 8/319 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F A+I+   N  +  ++ +VFD  K    S  I  +N+  ++ +  + G+  +    F+E
Sbjct: 407 FNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNT--LLAVFGQNGMDSQVSGIFKE 464

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+        + +N++I  YS+ G F++A+     M E  + P   TY+ ++ A  +  +
Sbjct: 465 MKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGL 524

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +++ +  L  M+   C P+ ++Y+ L+  +A    ++RM    + + +  +   +  +  
Sbjct: 525 WEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKT 584

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNYMFSRLDDLGDDL-A 341
           ++       +L + E+ +  L   R  +  D+  +  +  +Y +  M ++  ++ + +  
Sbjct: 585 LVLVNSKSDLLIETERAFLEL--RRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHE 642

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           +R   +   +   +  ++   + +  + ++RE+    ++ +  + N ++ AY +    K 
Sbjct: 643 TRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKE 702

Query: 402 LRVLLSELPTRHVKPDIVT 420
              + SE+    + PD+VT
Sbjct: 703 ASRIFSEMKDSALVPDVVT 721



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G L EEAV  FQ+M+     P    YN+++  + K  +  EA+  L EM+    SP 
Sbjct: 274 CRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPT 333

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           S TY+ LI AY K  + +E +D+  +M+   G  PD  TY  L+  F  AG        +
Sbjct: 334 SVTYNSLISAYAKGGLLEEALDLKTQMVH-KGIKPDVFTYTTLLSGFEKAGKDDFAIQVF 392

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLV--RKLAEVY 324
             M          T  A++  + N G   +M K +  + L + +P   D+V    L  V+
Sbjct: 393 LEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSP---DIVTWNTLLAVF 449

Query: 325 IKNYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            +N M S++  +  ++  A  +   +    L      C    + + +V + M  A V  +
Sbjct: 450 GQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAM-AVYKSMLEAGVVPD 508

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           ++T N +L A  +   ++    +L+E+     KP+ ++   L  A   G
Sbjct: 509 LSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANG 557



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 7/262 (2%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M    + P L  YN++I    +   + EA+    +MK    +P   TY+ L+  +GK 
Sbjct: 253 EAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKS 312

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
           +   E    L+ M+ +G SP  +TYN LI  +A  GLL+        M+ K +     T 
Sbjct: 313 RRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTY 372

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             +L  +   G  D   + +  +              L +++     F+ +  + DD+  
Sbjct: 373 TTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKL 432

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVV----REMESAKVRWNVTTANIILLAYLKMKD 398
                ++V    LL+   +    G+DS V    +EM+ A       T N ++ AY +   
Sbjct: 433 CNCSPDIVTWNTLLA---VFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGS 489

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
           F     +   +    V PD+ T
Sbjct: 490 FDQAMAVYKSMLEAGVVPDLST 511



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 154/387 (39%), Gaps = 26/387 (6%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI---IGMLCEEGLMEEAVRAFQE 164
            +I+ L  S++      VF  W     S  N F+S  I   I +L + G +  A      
Sbjct: 125 GIIKALGFSNKCDLALAVFH-WVRTNNSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLA 183

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++   +   +  Y  +I+ YS  G++ +A+   N+M++   +P   TY+ ++  YGK  M
Sbjct: 184 LQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGM 243

Query: 225 -YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +  +   ++ M+  G +PD  TYN LI       L +     ++ M  +       T  
Sbjct: 244 PWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYN 303

Query: 284 AILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
           A+LD    FG   + ++  K L     N  +P        L   Y K  +     DL   
Sbjct: 304 ALLDV---FGKSRRPQEAMKVLQEMEANGFSPTSVTY-NSLISAYAKGGLLEEALDLKTQ 359

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGID----SVVREMESAKVRWNVTTANIILLAYLK 395
           +  +  + ++     LLS        G D     V  EM +   + N+ T N ++  +  
Sbjct: 360 MVHKGIKPDVFTYTTLLSG---FEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGN 416

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG--TGALEMWKRIGFLFKTVE 452
              F  +  +  ++   +  PDIVT   L     + G D   +G  +  KR GF+ +   
Sbjct: 417 RGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDT 476

Query: 453 INTDPLVLAVYGKGHFLRYCEEVYSSL 479
            NT   +++ Y +         VY S+
Sbjct: 477 FNT---LISAYSRCGSFDQAMAVYKSM 500



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE- 227
            +KP    YN++I+ Y + G+  EA    +EMK+  L P   TY+  I  Y    M+ E 
Sbjct: 679 GMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEA 738

Query: 228 IDMCLKMMKLDGCSPDHITYNLLI 251
           ID+   M+K  GC PD  TYN ++
Sbjct: 739 IDVVRYMIK-QGCKPDQNTYNSIV 761



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PSL  YNS+++ YS+   F ++   L E+ E  + P   +Y+ +I AY +     E    
Sbjct: 647 PSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRI 706

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              MK     PD +TYN  I  +A   +        + M+ +      +T  +I+D Y  
Sbjct: 707 FSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCK 766

Query: 292 FGMLDKMEKFYKRLLN 307
                +   F K L N
Sbjct: 767 LDQRHEANSFVKNLSN 782



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K ++  RI+ +N+  +I   C  G M+EA R F EM+  AL P +  YN+ I  Y+    
Sbjct: 678 KGMKPDRIS-YNT--VIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSM 734

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           F EA+  +  M +    P  +TY+ ++  Y K     E +  +K
Sbjct: 735 FAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVK 778



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 104/259 (40%), Gaps = 41/259 (15%)

Query: 117 SRSRQIPQVFDMWKN-IEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SR     Q   ++K+ +E   + + ++   ++  L   GL E++ +   EME    KP+ 
Sbjct: 485 SRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNE 544

Query: 175 EIYNSIIHGYS------KIGKFNE---------------ALLFLN--------------E 199
             Y+S++H Y+      ++  F E                L+ +N              E
Sbjct: 545 LSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLE 604

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++   +SP   T + ++  YG+ +M  +    L  M     +P   TYN L+  ++ +  
Sbjct: 605 LRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSEN 664

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
            ++ E   + +L K M     +   ++ AY   G + +  + +  + +S   L  D+V  
Sbjct: 665 FQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDS--ALVPDVVTY 722

Query: 318 RKLAEVYIKNYMFSRLDDL 336
                 Y  + MF+   D+
Sbjct: 723 NTFIATYAADSMFAEAIDV 741


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  D+W ++    I  N      +I   CE+G +E+A     EM    + P++ 
Sbjct: 133 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 192

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKM 234
            YNSII GY + G  ++   FL +M    +SP   TY+ LI  Y K  KM+D   + L M
Sbjct: 193 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL-LNM 251

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M+ +   PD +TYN+LI  F+  G ++     ++ M  K +     T +++++ ++  G
Sbjct: 252 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 310



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C  GLM +A+R   EM G    P +  YN++++G  K  +  +A   LNEM+E  
Sbjct: 22  VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 81

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+  LI  Y      D+       M      PD +TYN LI      G L +  
Sbjct: 82  VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 141

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             +  M ++ +     T   ++D++   G ++    F   ++N
Sbjct: 142 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 184



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 36/264 (13%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EM  F L P   IY  +I G+ + G  ++AL   +EM      P   TY+ L+    K
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            +   + +  L  M+  G  PD  T+  LI  +   G L +    + +ML +R+     T
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++D     G LDK                                    +DL DD+ 
Sbjct: 124 YNTLIDGMCRQGDLDKA-----------------------------------NDLWDDMH 148

Query: 342 SR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
           SR I    + + + + SH            + EM +  +  N+ T N I+  Y +  +  
Sbjct: 149 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS 208

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
             +  L ++    V PD++T   L
Sbjct: 209 KGQKFLQKMMVNKVSPDLITYNTL 232



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  II   C  G + +  +  Q+M    + P L  YN++IHGY K  K ++A   
Sbjct: 191 IMTYNS--IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           LN M++  + P   TY+ LI  +  +    E     + M   G  PD  TY  +I     
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 308

Query: 257 AGLLKRMEGTYKSMLTK 273
           AG  K     +  ML +
Sbjct: 309 AGNSKEAFQLHDEMLQR 325



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+FD   N ++ R +      +I  +C +G +++A   + +M    + P+   Y+ +I  
Sbjct: 107 QLFDTMLN-QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 165

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + + G+  +A  FL+EM    + P   TY+ +I+ Y +     +    L+ M ++  SPD
Sbjct: 166 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 225

Query: 244 HITYNLLIQEF 254
            ITYN LI  +
Sbjct: 226 LITYNTLIHGY 236


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 155/353 (43%), Gaps = 14/353 (3%)

Query: 78  NALIQRLNKKV------SCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN 131
           N LI+   +K+      S  LQ+L+     T+D +  +I+    S    +   VF   +N
Sbjct: 159 NLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEAVFAEMRN 218

Query: 132 IE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
               S    +N+   I  L + G  ++A   F+ M+  A KP+ E Y  +I+ Y K GK 
Sbjct: 219 YGLPSSAVVYNA--YINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKS 276

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             AL   +EM   +  P   TY  L+ A+ +  + ++ +   + M+  G  PD   YN L
Sbjct: 277 FMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNAL 336

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNS 308
           ++ ++ AG        +  M         ++   ++DAY   G  D  E  +K +  +  
Sbjct: 337 MEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGI 396

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-I 367
              +K  +V  L   Y K    ++ +++ + +     + +      +L+    L   G +
Sbjct: 397 TPTMKSHMV--LLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKM 454

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           + V+R ME      +++T NI++  Y +    + +  L   LP++ +KPD+VT
Sbjct: 455 EEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVT 507



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F++M+   L+P +  YN+++  YS+ G    A    + M+ M 
Sbjct: 301 LVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMG 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ AYGK    D+ +   K MK  G +P   ++ +L+  ++  G + + E
Sbjct: 361 CEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCE 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    + L +  + ++L+ Y   G   KME+  + +              L   Y
Sbjct: 421 EILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRY 480

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHA 359
            +     R++DL   L S+  + ++V W  R+ +++
Sbjct: 481 GQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYS 516



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 127/299 (42%), Gaps = 45/299 (15%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +  P    Y+ LI+A+G+  +Y E +     +    C P   TY LLI+ +  +GLL++ 
Sbjct: 150 SFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKA 209

Query: 264 EGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           E  +  M  +   L SS +V  A ++  M  G  DK E+ +KR       +K+D  +   
Sbjct: 210 EAVFAEM--RNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKR-------MKKDACKPTT 260

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC------------LLSHRGI 367
           E Y           +  +L  + G++ +   L   ++SH C              +  G+
Sbjct: 261 ETYT----------MLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGL 310

Query: 368 ----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
               + V  +M+ A +  +V   N ++ AY +         + S +     +PD  +  I
Sbjct: 311 CEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 370

Query: 424 LYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           L DA  + GF  D     +  KR+G    T  + +  ++L+ Y K   +  CEE+ + +
Sbjct: 371 LVDAYGKAGFQDDAEAVFKDMKRVGI---TPTMKSHMVLLSAYSKMGSVNKCEEILNQM 426


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 4/284 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G +  A+  F+  E    +P+   Y+S+I+G  +  K ++A+  + +M+E  
Sbjct: 468 IIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 527

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LIQ   K   +D      +MM+ +G +PD   YN+L      +G   R E
Sbjct: 528 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG---RAE 584

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y  ++ K + L   T  +++D +   G  +      ++++N            L +  
Sbjct: 585 EAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQAL 644

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNV 383
            K    +    + D +  R  +  +V    ++S       H    S+  EM S+  + + 
Sbjct: 645 CKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSA 704

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            T  + + +Y K+   +    L+ E+    V PD+VT  +  + 
Sbjct: 705 ITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFING 748



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 11/365 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NE++   +I  LCE   + EA+     M      P+L  Y  +I G  K G+ ++A +
Sbjct: 250 RRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARV 309

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L+EM    + P   TY+ +I  Y K     +      +M+ +GC+PD  TYN LI    
Sbjct: 310 LLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGL- 368

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
           C G     E      + +       T   I++ Y     +D   +    +++S+  L   
Sbjct: 369 CGGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQ 428

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREM 374
               L  V IK +      D  +++ +      +V    ++   C +   G    V +  
Sbjct: 429 AYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLT 488

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGF 432
           E    R N  T + ++   ++ +       L++++    + P ++T   L     ++  F
Sbjct: 489 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 548

Query: 433 DGTGAL-EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTY 491
           D    L EM ++ G        N     L   G+       EE YS L        + TY
Sbjct: 549 DNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRA------EEAYSFLVKKGVVLTKVTY 602

Query: 492 QNLID 496
            +L+D
Sbjct: 603 TSLVD 607



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  + +EG  + A   F EM     KPS   Y   I  Y KIG+  EA   + EM+   
Sbjct: 675 IISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNG 734

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           ++P   TY+  I   G     D     LK M    C P++ TY LL++ F
Sbjct: 735 VAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHF 784



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + +      ++  LC++  + EA+    +M    +K ++  Y  II    K GK + 
Sbjct: 628 EGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDH 687

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A    NEM      P + TY   I +Y K    +E    +  M+ +G +PD +TYN+ I 
Sbjct: 688 AKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFIN 747

Query: 253 EFACAGLLKRMEGTYKSML 271
                G +     T K M+
Sbjct: 748 GCGHMGYMDCAFSTLKRMI 766



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 20/303 (6%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG +  A R F+ +    ++      N+++ GY + G   +A   L  M  M      
Sbjct: 194 CKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNE 253

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  LIQ   + +   E  + L MM  DGCSP+  TY LLI+     G +         
Sbjct: 254 YSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDE 313

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IK 326
           M  + +     T  A++D Y   G L       K  L  +T ++ +        Y   I 
Sbjct: 314 MPRRGVVPSVWTYNAMIDGYCKSGRL-------KDALGIKTLMEGNGCNPDDWTYNSLIH 366

Query: 327 NYMFSRLDDLGDDLASRIGR---TELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVR 380
                + D+  + L   I R     ++    +++  C      ID  +R    M S+K +
Sbjct: 367 GLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYC--KAEKIDDALRVKSIMISSKCK 424

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALE 439
            ++    +++   +K    K  +  L+E+    + P++V    + DA  ++G  G  ALE
Sbjct: 425 LDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVG-AALE 483

Query: 440 MWK 442
           ++K
Sbjct: 484 VFK 486



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            + M    L P+   Y+SII G+ K  +  EA + L+ M   ++SP  + Y  LI+    
Sbjct: 813 LERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCD 872

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            K++++    +  M   G  P   +Y+ LI
Sbjct: 873 IKLFEKAASFVTNMIECGFQPHLESYHYLI 902



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 16/177 (9%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEA     EME   + P +  YN  I+G   +G  + A   L  M + + 
Sbjct: 711 ISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASC 770

Query: 206 SPQSDTYDGLIQAYGKYKM----------------YDEIDMCLKMMKLDGCSPDHITYNL 249
            P   TY  L++ + K  +                 D +   L+ M   G +P  +TY+ 
Sbjct: 771 EPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSS 830

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +I  F  A  L+        ML K +         ++    +  + +K   F   ++
Sbjct: 831 IIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMI 887


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 157/372 (42%), Gaps = 48/372 (12%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML----CEEGL 154
           G + + +F  +IR +  S   +    VF   KN E    N      I GM+         
Sbjct: 113 GRFARRNFPLLIREIAISGSLKHAVHVFRWMKNQE----NYCARNDIYGMMIRLHARHNK 168

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP+ + YNS+IH +++ G++  A+  +++M+   + P   TY+ 
Sbjct: 169 VDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNN 228

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD IT+N+++  F       +    ++ M + 
Sbjct: 229 VINACGAAGNWKKALELCKKMTE-NGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSS 287

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--------- 324
           ++   + TM  ++   +  G+  +  + +  +   RT    D+V   + +Y         
Sbjct: 288 KVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAE 347

Query: 325 ----IKNYMFSR--------LDDLGDDLASRIGRTELVWCLRLL----------SHACLL 362
               + + M +          + L    AS    TE +   +LL          S+  LL
Sbjct: 348 NCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLL 407

Query: 363 SHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           +  G  +       V  EM     + N  + N ++ AY      K    LL E+    ++
Sbjct: 408 NAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQ 467

Query: 416 PDIVTIGILYDA 427
           PD+++I  L  A
Sbjct: 468 PDVISISTLLTA 479



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 128/317 (40%), Gaps = 20/317 (6%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VFD+    E  R N  +   ++G     G+  EA+  F+ ++   L+P +  Y S+++ Y
Sbjct: 352 VFDIMV-AEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAY 410

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            +  +  +A    NEM++    P   +Y+ LI AYG   M  E    L  M+ DG  PD 
Sbjct: 411 GRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDV 470

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           I+ + L+        L +++    +  ++ + L +    + + +Y++ G        YK+
Sbjct: 471 ISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLG-------DYKK 523

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG----------DDLASRIGRTELVWCLR 354
            L   T ++   V+  A  Y  N + S    LG          D L   I  T+ V+   
Sbjct: 524 ALVLYTSMRAGNVKPDAVTY--NILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSV 581

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           + S+          S    M+      +V T   ++ AY     ++    L  E+     
Sbjct: 582 ICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGT 641

Query: 415 KPDIVTIGILYDARRIG 431
           +PD +    L +A   G
Sbjct: 642 QPDAIVCSSLMEALNKG 658



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS---QKIIGM 148
           L  ++ DG   +    ++   L    R +Q+ ++ D+     KSR  + N+      IG 
Sbjct: 458 LHEMEQDG--IQPDVISISTLLTACGRCKQLTKI-DIILAAAKSRGIQLNTVAYNSGIGS 514

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
               G  ++A+  +  M    +KP    YN +I G  K+G++ E+L F  +M ++N+   
Sbjct: 515 YLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLT 574

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            + Y  +I +Y K     E       MK  GC PD +TY  LI+ ++  G  +R    +K
Sbjct: 575 KEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFK 634

Query: 269 SM 270
            M
Sbjct: 635 EM 636


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 5/253 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F+EM+    +P +  YN+++  YS+ G    A    + M+ M 
Sbjct: 318 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ A+G+  ++ E +   + +K  G  P   ++ LL+   A +G + R E
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVRKL 320
                +    +   +  + A+L+AY   G LD ME+ +  +      S           L
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVL 497

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKV 379
              Y +     R++     LA+R    ++V W  R+ ++A    +     V  EM  A  
Sbjct: 498 VNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGC 557

Query: 380 RWNVTTANIILLA 392
             +  TA ++L A
Sbjct: 558 YPDAGTAKVLLAA 570



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/339 (18%), Positives = 127/339 (37%), Gaps = 48/339 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM+   + P+  +YN+ + G  K     +A+     MK+      +
Sbjct: 218 CGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNT 277

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY  +I  YGK           + MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 278 ZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEE 337

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G+     + +                      +  +M
Sbjct: 338 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS---------------------LMEHM 376

Query: 330 FSRLDDLG-DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               D    + L    GR  L              H+  ++  +E++   +R  + +  +
Sbjct: 377 GCEPDRASYNILVDAFGRAGL--------------HQEAEAAFQELKQQGMRPTMKSHML 422

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---- 444
           +L A+ +  +      ++++L    ++PD   +  + +A    +   G L+  +R+    
Sbjct: 423 LLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA----YGRAGRLDDMERLFAAM 478

Query: 445 ----GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
               G      + +T  +++  YG+  +L   E  + SL
Sbjct: 479 ERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSL 517



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 15/288 (5%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++  +  P    Y+ LI AYG+ +   E +     +    C P   TY LL++ +  +G 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L R EG    M    +   ++   A LD  +     +K  + Y+R+   R     +    
Sbjct: 223 LHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXL 282

Query: 320 LAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREM 374
           +  VY K N   S L    +     +G    +     L +A   +  G+    + V  EM
Sbjct: 283 MINVYGKANQPMSSLRVFRE--MKSVGCKPNICTYTALVNA--FAREGLCEKAEEVFEEM 338

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF- 432
           + A    +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G  
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLH 398

Query: 433 -DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
            +   A +  K+ G       + +  L+L+ + +   +  CEEV + L
Sbjct: 399 QEAEAAFQELKQQGM---RPTMKSHMLLLSAHARSGNVARCEEVMAQL 443



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEME--- 166
            L   +RS  + +  ++   + KS  R + F    ++      G +++  R F  ME   
Sbjct: 423 LLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGD 482

Query: 167 -GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
              A  P    YN +++ Y + G  +        +    L+    T+   I AY + K Y
Sbjct: 483 GASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEY 542

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            +     + M   GC PD  T  +L+   AC+   +  + T    + + MH  + T+ A+
Sbjct: 543 GQCLRVFEEMVDAGCYPDAGTAKVLLA--ACSDERQVEQVT---AIVRSMHKDAKTLFAL 597



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 102/276 (36%), Gaps = 48/276 (17%)

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           I +C  +++     PD I YNLLI  +     L   E  Y ++L  R      T   +L 
Sbjct: 156 ITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLR 215

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           AY   G L + E     +  +  P         A VY      + LD             
Sbjct: 216 AYCGSGQLHRAEGVISEMQRNGIP-------PTATVY-----NAYLDG------------ 251

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM-KDFKHLRVLL 406
                  LL   C  S + ++ V + M+  + R N  T  +++  Y K  +    LRV  
Sbjct: 252 -------LLKARC--SEKAVE-VYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRV-F 300

Query: 407 SELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA----- 461
            E+ +   KP+I T   L +A    F   G  E  + +    +  +   +P V A     
Sbjct: 301 REMKSVGCKPNICTYTALVNA----FAREGLCEKAEEV--FEEMQQAGHEPDVYAYNALM 354

Query: 462 -VYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             Y +    +   E++S +E    E  R +Y  L+D
Sbjct: 355 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVD 390


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           S  II    + G   +A+     ++   L P      ++I      G+  EA     EMK
Sbjct: 259 SNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMK 318

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           +  L P++  Y+GL++ Y K  M  + +  +  M+  G SPD  TY+LLI  ++ AG  +
Sbjct: 319 DNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWE 378

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
                 K M    +   S     IL +Y + G   K  +  K + NS   ++ D  R   
Sbjct: 379 SARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG--VRPD--RHFY 434

Query: 322 EVYIKNY-MFSRLDDLGDD----LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
            V I  +  FS LD   D     L+  I    + W   +  H     H   + +  EM  
Sbjct: 435 NVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMME 494

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 VTT NI++ ++ + + +  ++ L+  + +  + P++VT   L D
Sbjct: 495 KGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLID 544



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AVI  L +S R  +   +F+ M  N  K +   +N   ++    + G++++A     EME
Sbjct: 296 AVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNG--LLKGYVKAGMLKDAEFIVSEME 353

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              + P    Y+ +I  YS  G++  A + L EM+  N+ P S  +  ++ +Y     + 
Sbjct: 354 RSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQ 413

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           +    LK MK  G  PD   YN++I  F     L     T+  ML++ +   + T   ++
Sbjct: 414 KSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLI 473

Query: 287 DAYMNFGMLDKMEKFYKRLL 306
           D +    + ++ E+ ++ ++
Sbjct: 474 DCHCKAELHERAEELFEEMM 493



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    ++GL E+AV AF+ M   +LKPSL   NS+I+ + +  +  EA   L  MKE +
Sbjct: 577 LINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKEND 636

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           L P   TY  L++A  +   ++++    + M L GC+PD
Sbjct: 637 LKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPD 675



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+  L E A   F+EM      P +  +N +I+ + +  ++++    +  M+ + L P  
Sbjct: 477 CKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNV 536

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI  YGK   + +   CL+ MK  G  P    YN LI  +A  GL ++    ++ 
Sbjct: 537 VTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRL 596

Query: 270 MLTKRMHLRSSTMVAILDAY 289
           M    +      + ++++A+
Sbjct: 597 MRADSLKPSLLALNSLINAF 616



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G   +A+   ++M+   LKPS  +YN++I+ Y++ G   +A+     M+  +
Sbjct: 542 LIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADS 601

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P     + LI A+G+ +   E    LK MK +   PD +TY  L++         ++ 
Sbjct: 602 LKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVP 661

Query: 265 GTYKSML 271
             Y+ M+
Sbjct: 662 SVYEEMI 668



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 67/143 (46%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+  F +M    ++P    +N++I  + K      A     EM E   SP   T++ 
Sbjct: 447 LDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNI 506

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I ++G+ + +D++   +  M+  G  P+ +TY  LI  +  +G         + M +  
Sbjct: 507 MINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAG 566

Query: 275 MHLRSSTMVAILDAYMNFGMLDK 297
           +   S+   A+++AY   G+ ++
Sbjct: 567 LKPSSTMYNALINAYAQKGLSEQ 589



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 130 KNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           K +E + I  N +   +I+    + G  +++ +  +EM+   ++P    YN +I  + K 
Sbjct: 385 KEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKF 444

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              + A+   ++M    + P + T++ LI  + K ++++  +   + M   G SP   T+
Sbjct: 445 SCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTF 504

Query: 248 NLLIQEFA 255
           N++I  F 
Sbjct: 505 NIMINSFG 512


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 161/386 (41%), Gaps = 46/386 (11%)

Query: 117 SRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
            +SR+I +  ++ + +E       I  +NS  +I     +GL+EEA+    +M    +K 
Sbjct: 150 GKSRRIKEAIEVLREMEVNGCSPSIVTYNS--LISAYARDGLLEEAMELKNQMVERGIKL 207

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            +  Y +++ G+ + GK   A+    EM+     P   T++ LI+ +G    + E+    
Sbjct: 208 DVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + +K+  C PD +T+N L+  F   G+   + G +K M          T   ++ AY   
Sbjct: 268 EEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G  D+    YKR+L+  T +  DL       Y  N + + L   G            +W 
Sbjct: 328 GSFDQAMAMYKRMLD--TGITPDL-----STY--NAVLAALARGG------------LW- 365

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
                          + ++ EM+    + N  T   +L AY   K+   +  L  E+ + 
Sbjct: 366 ------------EQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSG 413

Query: 413 HVKPDIV---TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL 469
            ++P  V   T+ ++     +  +   A    KR GF   + +++T   ++A+YG+   +
Sbjct: 414 VIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGF---SPDLSTLNAMIAIYGRRQMV 470

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLI 495
               E+ + ++         TY +L+
Sbjct: 471 TKTNEILNFMKESGFTPSLATYNSLM 496



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 122/308 (39%), Gaps = 43/308 (13%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------------------- 189
           G   EAV  F++ME    KP+L  YN I++ Y K+G                        
Sbjct: 47  GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYT 106

Query: 190 -------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                        + EA     +MK M   P   TY+ L+  YGK +   E    L+ M+
Sbjct: 107 YNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREME 166

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           ++GCSP  +TYN LI  +A  GLL+        M+ + + L   T  A+L  ++  G  +
Sbjct: 167 VNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDE 226

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
              + ++ +  +           L +++     F+ +  + +++       ++V    LL
Sbjct: 227 SAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLL 286

Query: 357 SHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           +   +    G+DS    V +EM+         T N ++ AY +   F     +   +   
Sbjct: 287 A---VFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDT 343

Query: 413 HVKPDIVT 420
            + PD+ T
Sbjct: 344 GITPDLST 351



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/318 (17%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A+I+   N  +  ++ +VF+  K I     +      ++ +  + G+  E    F+EM
Sbjct: 247 FNALIKMHGNRGKFAEMMKVFEEIK-ICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 305

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P  + YN++I  YS+ G F++A+     M +  ++P   TY+ ++ A  +  ++
Sbjct: 306 KRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLW 365

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++ +  L  M+   C P+ +T+  L+  +A    + RM    + + +  +   +  +  +
Sbjct: 366 EQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTL 425

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNYMFSRLDDLGDDL-AS 342
           +       +L + E+ +  L   R     DL  +  +  +Y +  M ++ +++ + +  S
Sbjct: 426 VLVNSKCDLLLEAERAFLEL--KRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKES 483

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
               +   +   +  H+   +    + V++E+ +  ++ ++ + N ++ AY +    K  
Sbjct: 484 GFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEA 543

Query: 403 RVLLSELPTRHVKPDIVT 420
             + SE+    + PD++T
Sbjct: 544 SHIFSEMRESGLIPDVIT 561



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 17/322 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II ML +EG +  A      +     +P +  Y S+I      G++ EA++   +M+E  
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   TY+ ++  YGK  M +++I    + MK  G  PD  TYN LI       L +  
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKEDLV--RKL 320
              ++ M +        T   +LD Y     + + +E   +  +N  +P    +V    L
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSP---SIVTYNSL 180

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMES 376
              Y ++ +     +L + +  R  + ++     +LS        G D     V  EM +
Sbjct: 181 ISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSG---FVRTGKDESAMRVFEEMRT 237

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFD 433
           A  + N+ T N ++  +     F  +  +  E+      PDIVT   L   +    +  +
Sbjct: 238 AGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSE 297

Query: 434 GTGALEMWKRIGFLFKTVEINT 455
            +G  +  KR+GF+ +    NT
Sbjct: 298 VSGVFKEMKRVGFVPERDTYNT 319



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E +    +E+    +KP +  YN++I  Y + G+  EA    +EM+E  L P   TY+  
Sbjct: 506 ERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTF 565

Query: 216 IQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEF 254
           + +Y    M++E ID+   M+K  GC P+  TYN +I  +
Sbjct: 566 VASYAADSMFEEAIDVVCYMIK-HGCKPNQNTYNSVIDGY 604



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 2/144 (1%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F +  GF   PSL  YNS+++ +S+   F  +   L E+    + P   +Y+ +I AY +
Sbjct: 479 FMKESGFT--PSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCR 536

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                E       M+  G  PD ITYN  +  +A   + +        M+        +T
Sbjct: 537 NGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNT 596

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL 305
             +++D Y      D   KF   L
Sbjct: 597 YNSVIDGYCKLNRRDDAIKFISSL 620



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  +I   C  G M+EA   F EM    L P +  YN+ +  Y+    F EA
Sbjct: 521 KPDIISYNT--VIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEA 578

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           +  +  M +    P  +TY+ +I  Y K    D+
Sbjct: 579 IDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDD 612


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 13/340 (3%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  ++    D   N E  R + F    ++  LC  G ++ A+     M      P +  
Sbjct: 295 GRIEEVLSFIDEMSN-EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YNS+I G  K+G+  EA+  LN+M   + SP + TY+ LI    K    +E     +++ 
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT 413

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  PD  T+N LIQ        +     ++ M TK  H    T   ++D+  + G L+
Sbjct: 414 SKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLE 473

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           +     K + +S           L + + KN      +++ D++  +     +V    L+
Sbjct: 474 EALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLI 533

Query: 357 SHACLLSHRGIDSVVREMES---AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
              C   +R ++   + M+      ++ +  T N +L  + +  D K    ++  + +  
Sbjct: 534 DGLC--KNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 414 VKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI 453
            +PD VT G L     +G    G +E+  R   L +TV++
Sbjct: 592 CEPDSVTYGTLI----LGLSKAGRVELASR---LLRTVQL 624



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 3/197 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SR R + +   + K +E S    N      +I   C+   +EEA   F EME   +  ++
Sbjct: 468 SRGR-LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNV 526

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN++I G  K  +  EA   +++M    L P   TY+ L+  + +     +    ++ 
Sbjct: 527 VTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQT 586

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M  +GC PD +TY  LI   + AG ++      +++  K M L   T   ++ A      
Sbjct: 587 MTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKR 646

Query: 295 LDKMEKFYKRLLNSRTP 311
             +  + ++ ++    P
Sbjct: 647 TSEAVRLFREMMEKGDP 663



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 5/153 (3%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
            +I  L  + R  +  Q+ D    +E  + ++F    ++   C  G +++A    Q M  
Sbjct: 531 TLIDGLCKNRRVEEAAQLMDQML-MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTS 589

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
              +P    Y ++I G SK G+   A  LL   ++K M L+PQ  TY+ +I+A  + K  
Sbjct: 590 NGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ--TYNPVIKALFREKRT 647

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            E     + M   G  PD +TY ++ +     G
Sbjct: 648 SEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  FN   +I  LC    +  A+   +EM  + L P  + + +++ G+ + G  N A
Sbjct: 208 KPDVTTFNI--LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGA 265

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L    +M        + T + L+  Y K    +E+   +  M  +G  PD  T+N L+  
Sbjct: 266 LRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNG 325

Query: 254 FACAGLLK 261
               G +K
Sbjct: 326 LCRIGHVK 333



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 53/290 (18%), Positives = 109/290 (37%), Gaps = 37/290 (12%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS  IY  ++    K G F      L EMK      +  T+  LI++Y K++++DE    
Sbjct: 103 PSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAV 162

Query: 232 LKMM------KLD------------------------------GCSPDHITYNLLIQEFA 255
           + +M      KLD                              G  PD  T+N+LI+   
Sbjct: 163 VDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALC 222

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            A  ++      + M +  +     T   ++  ++  G ++   +  ++++ +  P    
Sbjct: 223 RAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNV 282

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREM 374
            V  L   Y K      +    D++++   R +      L++  C + H +    ++  M
Sbjct: 283 TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                  ++ T N ++    K+ + +    +L+++  R   P+ VT   L
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTL 392



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           F KN  R  +  ++FD  +    SR N      +I  LC+   +EEA +   +M    LK
Sbjct: 501 FCKNK-RIEEAEEIFDEMELQGISR-NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLK 558

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    YNS++  + + G   +A   +  M      P S TY  LI    K    +     
Sbjct: 559 PDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRL 618

Query: 232 LKMMKLDGCSPDHITYNLLIQ 252
           L+ ++L G      TYN +I+
Sbjct: 619 LRTVQLKGMVLAPQTYNPVIK 639



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 43/95 (45%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +KP +  +N +I    +  +   A+L + EM    LSP   T+  L+Q + +    +  
Sbjct: 206 GIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGA 265

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
               + M   GC   ++T N+L+  +   G ++ +
Sbjct: 266 LRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEV 300


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 132/285 (46%), Gaps = 7/285 (2%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           RF++  S+S     +FD  +  ++ + N      ++  L  EGL E+A   F++M+    
Sbjct: 5   RFVQ-ESKSHMAQNIFDEMRT-QRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGY 62

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P +  YN+++  YS+ G    A    + M+ M   P   +Y+ ++ AYG+  ++++   
Sbjct: 63  EPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 122

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             + MK  G +P   ++ LL+  ++ AG + + E     M    +   +  M ++L+ Y 
Sbjct: 123 VFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYG 182

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
             G   KME  +  +   + P + D+     L  VY +     R+++L   L ++    +
Sbjct: 183 RLGQFGKMEDLFSTM--QKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 240

Query: 349 LV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           +V W  R+ +++    ++    +  +M  A    +  TA ++L A
Sbjct: 241 VVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSA 285



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 115/265 (43%), Gaps = 38/265 (14%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F EM     KP++  + ++++  ++ G   +A     +M+E    P    Y+ L++
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALME 74

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           +Y +            +M+  GC PD  +YN+++  +  AGL +  +  ++ M  KR+ +
Sbjct: 75  SYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEM--KRIGI 132

Query: 278 RSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
             +  + + +L AY + G + K E    ++   ++ LK D        ++ N M +    
Sbjct: 133 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQM--HKSGLKPD-------TFVMNSMLNLYGR 183

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
           LG     + G+ E                     +   M+    R +++T NI++  Y +
Sbjct: 184 LG-----QFGKME--------------------DLFSTMQKGPCRADISTYNILINVYGR 218

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVT 420
               + +  L   LP ++++PD+VT
Sbjct: 219 AGFVERMEELFQLLPAKNLEPDVVT 243


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 128/312 (41%), Gaps = 36/312 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +  +I  V  ++K + + RI  N      +I  LC+ G  ++A    ++M+ +   PS+ 
Sbjct: 206 KEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVI 265

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN+II GY K GK  +A   L EM    + P   T++ LI  + + +         + M
Sbjct: 266 TYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM 325

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  P+ +TYN LI      G L    G    M    +     T  A+++ +    ML
Sbjct: 326 QRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKML 385

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
            +          +R  L +   R LA   I    F+ L     D   + GR +  + LR 
Sbjct: 386 KE----------AREMLDDIGKRGLAPNVI---TFNTL----IDAYGKAGRMDDAFLLRS 428

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           +                 M    V  NV+T N +++ + +  + K  R L  E+    +K
Sbjct: 429 M-----------------MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK 471

Query: 416 PDIVTIGILYDA 427
            D+VT  IL DA
Sbjct: 472 ADLVTYNILVDA 483



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 112/282 (39%), Gaps = 34/282 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G ++EA+    +M G  LKP++  YN++I+G+ K     EA   L+++ +  
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   T++ LI AYGK    D+  +   MM   G  P+  TYN LI  F   G +K   
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K M    +     T   ++DA    G   K      RLL+    +  +         
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKA----VRLLDEMFEVGLNPSHLTYNAL 515

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           I  Y              R G +     +R L                 ME    R N+ 
Sbjct: 516 IDGYF-------------REGNSTAALNVRTL-----------------MEKKGRRANIV 545

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           T N+++  +      +    LL+E+  + + P+  T  IL D
Sbjct: 546 TYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 1/155 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G  C EG ++EA +  +EMEG  LK  L  YN ++    K G+  +A+  L+EM E+ 
Sbjct: 446 IVG-FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY+ LI  Y +            +M+  G   + +TYN+LI+ F   G L+   
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 564

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
                ML K +    +T   + D  M  G +  ++
Sbjct: 565 RLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 599



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC++G   +AVR   EM    L PS   YN++I GY + G    AL     M++  
Sbjct: 480 LVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKG 539

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ LI+ +      +E +  L  M   G  P+  TY++L  E    G +  ++
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 599

Query: 265 G 265
           G
Sbjct: 600 G 600


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 40/326 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG + E      EM G  + P++  Y+S+I   S +G+   AL  L +M    
Sbjct: 253 LICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRG 312

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+  L++ Y       E     ++M L+G  P+ + YN L+    C+G L    
Sbjct: 313 CRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAV 372

Query: 265 GTYKSMLTKRMHLRS--STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
                M  K    R   +T   ++  ++  G L    + + +++N        +   + +
Sbjct: 373 DVCGRM-EKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVD 431

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELV----------------WCLRLLS----HACLL 362
           V  KN MF +   L D++A+      +V                W +R++     + CL 
Sbjct: 432 VLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLP 491

Query: 363 SHR-------GIDSV---------VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
             R       G+ SV         +RE+E  KV  N+ T N ++  +      + +  +L
Sbjct: 492 DTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVL 551

Query: 407 SELPTRHVKPDIVTIG-ILYDARRIG 431
             +    VKPD +T+  ++Y   ++G
Sbjct: 552 GRMLVNGVKPDAITVNVVIYAYSKLG 577



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 121 QIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIY 177
           ++ +   +W+   +E  R N      ++  LC  G + EAV     ME     +P++  Y
Sbjct: 332 RVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTY 391

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           ++++HG+ K G    A    N+M    + P    Y  ++    K  M+D+    +  M  
Sbjct: 392 STLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMAT 451

Query: 238 DGCSPDHITYNLLIQEFACAG 258
           DGC P  +T+N  I+   C G
Sbjct: 452 DGCPPTVVTFNTFIKGLCCGG 472



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           KNS   +    + +M  +     +  FN+   I  LC  G +  A+R   +M+ +   P 
Sbjct: 435 KNSMFDQAYRLIDNMATDGCPPTVVTFNT--FIKGLCCGGRVLWAMRVVDQMQRYGCLPD 492

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              YN ++ G   + +  EA   + E++E  +     TY+ ++  +  +   + +   L 
Sbjct: 493 TRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLG 552

Query: 234 MMKLDGCSPDHITYNLLIQEFA 255
            M ++G  PD IT N++I  ++
Sbjct: 553 RMLVNGVKPDAITVNVVIYAYS 574



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY--SKIGKFNEALLFLNEMKEMNLSPQSD 210
           GL + A++ F  ++ F  KP+++IYN ++         KF+        M+   + P   
Sbjct: 122 GLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVF 181

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           TY+ L++A  K    D     L  M   GC PD ++Y  ++
Sbjct: 182 TYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVV 222


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 26/349 (7%)

Query: 118 RSRQIPQVFDMWKNIEKSR------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + +Q  Q  +++ ++ + R      +  F S  II +    G +E+    F  M    +K
Sbjct: 182 KVKQYGQAIEIFSSMREKRSECRPDVVTFTS--IIHLYSVRGQIEDCKAVFSTMLAEGIK 239

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P++  YN++I  Y+  G   EA    +EMK     P   +Y  LI  +G+ +        
Sbjct: 240 PNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREV 299

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
             MMK + C P+ ++YN L+  +   G L +     + M    +H    ++  +L A   
Sbjct: 300 FDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 359

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYM----FSRLDDLGDDLASRIGR 346
           FG    ++        S   L+   +  +A    I +YM    + +  +L   + ++  +
Sbjct: 360 FGQKVNIDSVL-----SAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTK 414

Query: 347 TELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
            + V    L+S  C +S +       +EM   ++  +    + ++ AY K         L
Sbjct: 415 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 474

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN 454
            + L      PD+VT   + +A         A EMW+++  L++ +E N
Sbjct: 475 FNSLKGSGCCPDLVTYTAMINAY-------SASEMWEKVCALYQEMEAN 516



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N       IG     G  E+A+  ++ ME    KP    +  +I G  ++ K+ EAL F
Sbjct: 380 LNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCF 439

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EM ++ +   S+ Y  +I AY K     + +     +K  GC PD +TY  +I  ++ 
Sbjct: 440 FKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSA 499

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           + + +++   Y+ M    + L S    A++ A+
Sbjct: 500 SEMWEKVCALYQEMEANNIQLDSIACSALMKAF 532



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 139/315 (44%), Gaps = 19/315 (6%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           QVFD  KN     +R + +N   +I +      +++A   F EM+ +  KP +E YN++I
Sbjct: 15  QVFDWMKNQRNYCARNDIYN--MMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALI 72

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           + + + G++  A   + +M    + P   T++ LI A G    + E     K M  +G  
Sbjct: 73  NAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVG 132

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD +T+N+++  +       +    ++ M    +   ++T+  ++   +      +  + 
Sbjct: 133 PDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEI 192

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR--LLSHA 359
           +  +   R+  + D+V   + +    +++S    + D  A  +  T L   ++  ++S+ 
Sbjct: 193 FSSMREKRSECRPDVVTFTSII----HLYSVRGQIEDCKA--VFSTMLAEGIKPNIVSYN 246

Query: 360 CLLS---HRGID----SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            L+S     G+D    SV  EM+ +    +V +   ++  + + +     R +   +   
Sbjct: 247 ALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRN 306

Query: 413 HVKPDIVTIGILYDA 427
             KP++V+   L DA
Sbjct: 307 KCKPNLVSYNALMDA 321


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
            +EF    ++     EGL++EA   F  ++    KP    YN+++H + K G F+EAL  
Sbjct: 291 FDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSV 350

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM+E N  P + TY+ ++ AY +   ++E  + +  M   G  P+ +TY  +I  +  
Sbjct: 351 LSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGR 410

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G + +       M  + M L     VA  +A +  GML K
Sbjct: 411 VGDIDKA----LEMFDQMMELGCVPNVATYNAVL--GMLGK 445



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 119/278 (42%), Gaps = 1/278 (0%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            +++      G  EE       M    + P+   Y +II+ Y ++G  ++AL   ++M E
Sbjct: 367 NEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMME 426

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +   P   TY+ ++   GK  + +E+   L  MKL+GCSP+HIT+N ++      G+ K 
Sbjct: 427 LGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKY 486

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           +   ++ M          T   ++ AY   G  +   K ++ ++ +      +    L  
Sbjct: 487 VNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN 546

Query: 323 VYIKNYMFSRLDDLGDDLASRIGR-TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
              +   +   + +  D+ ++  R +E  + L + S+A   + +GI+ + + +    +  
Sbjct: 547 ALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFP 606

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           +      ++LA  K +    +      L     KPD+V
Sbjct: 607 SWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLV 644



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EE +R  Q   G   KP L  YN++I G+ + G   E +  L+EM  + + P   TY+  
Sbjct: 698 EEVLRMLQTSGG---KPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTF 754

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           I  Y    M+ EI+  +  M +  C P+ +TY ++   +  A
Sbjct: 755 ISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKA 796



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 127 DMWKNIEKSRINEFNSQK--------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           D WK  E  R+ + +  K        +I   C +GLM+E +R   EM    + P +  YN
Sbjct: 693 DCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYN 752

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKL 237
           + I GY+  G F E    ++ M   N  P   TY  +   Y K + YDE ID   K+  +
Sbjct: 753 TFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKIKDV 812

Query: 238 DGCSPDH 244
           D    D 
Sbjct: 813 DDTFGDQ 819



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 23/224 (10%)

Query: 92  LQILQHDGDWTKDHF---WAV------------------IRFLKNSSRSRQIPQVFDMWK 130
           L+ L + G+W K      W+V                  +R L   S+     ++FD+  
Sbjct: 155 LKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQHTVASKLFDVIP 214

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK- 189
            ++   ++      I+      G    A+  F+ M    L PSL  YN ++  Y K+G+ 
Sbjct: 215 -LDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRS 273

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           +++ L  L+EM+   L     T   ++ A G+  + DE       +K +G  P  +TYN 
Sbjct: 274 WDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNA 333

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           L+  F  AG+          M        + T   ++ AY+  G
Sbjct: 334 LLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAG 377



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 123/328 (37%), Gaps = 51/328 (15%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +I+H YS+ GK++ A+     M E  LSP   TY+ ++  YGK  + +D+I   L  M
Sbjct: 225 YTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEM 284

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   D  T + ++      GL+      +  + ++     + T  A+L  +   G+ 
Sbjct: 285 RSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIF 344

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
            +       +  +  P       ++   Y++                             
Sbjct: 345 SEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGF-------------------------- 378

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                   H     V+  M S  +  N  T   I+ AY ++ D      +  ++      
Sbjct: 379 --------HEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCV 430

Query: 416 PDIVTIGILYDARRIGFDGTGAL--EMWKRIGFL------FKTVEINTDPLVLAVYGKGH 467
           P++ T    Y+A  +G  G  +L  EM K +G +         +  NT   +LA+ GK  
Sbjct: 431 PNVAT----YNA-VLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNT---MLAMCGKKG 482

Query: 468 FLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             +Y  +V+  ++    E  R T+  LI
Sbjct: 483 MHKYVNQVFREMKNCGFEPDRDTFNTLI 510



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +F  W  +    +  F  + + GM           RAFQ ++    KP L + NS++  +
Sbjct: 604 IFPSWMLLRTLVLANFKCRSLTGM----------ERAFQALQKHGYKPDLVLCNSMLSIF 653

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           +K   ++ A   L  + +  L P   T++ L+  Y +     + +  L+M++  G  PD 
Sbjct: 654 AKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDL 713

Query: 245 ITYNLLIQEFACAGLLK 261
           ++YN +I+ F   GL++
Sbjct: 714 VSYNTVIKGFCRKGLMQ 730



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 1/164 (0%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P L  +NS++  Y++ G   +A   L  ++     P   +Y+ +I+ + +  +  E 
Sbjct: 673 GLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEG 732

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M   G  P   TYN  I  +A  G+   +      M+         T   + D 
Sbjct: 733 IRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADG 792

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           Y      D+   F  ++ +      +  VR+L    ++NY+ SR
Sbjct: 793 YCKARRYDEAIDFVSKIKDVDDTFGDQSVRRLVS-RVRNYLESR 835


>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Vitis vinifera]
 gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 15/288 (5%)

Query: 153 GLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL ++A    ++M+     +P +  Y+ +I    ++  F++  + L++M    + P + T
Sbjct: 187 GLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVT 246

Query: 212 YDGLIQAYGKYKMYDEID-MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y+ LI AYGK K + E++   L+M++   C PD  T N  ++ F  +G ++ ME  Y+  
Sbjct: 247 YNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKF 306

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
            +  +     T   +LD+Y       K EK+ K         K      +    +    F
Sbjct: 307 QSAGIEPNIKTFNILLDSY------GKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAF 360

Query: 331 SRLDDLGD-DLASRIGRTELV--WCLRLLSHACLLSHRG----IDSVVREMESAKVRWNV 383
            R  DL   +   R+ R+E +   C+ L S        G    I  V+R +E++ V  ++
Sbjct: 361 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDI 420

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
              N ++ AY ++  F  ++ +L  +  +  KPD +T   +  A +IG
Sbjct: 421 VFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIG 468



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F+ M    +KPS     S++  Y + GK  +    L  ++  ++      ++ L+ AYG+
Sbjct: 373 FRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGR 432

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
              + E+   L+MMK  GC PD ITY  +I+ +   G+
Sbjct: 433 LGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGM 470



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P S  Y  LI   GK K  ++       M  +GC  +H  Y  L+  ++ +GL  +    
Sbjct: 136 PNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLFDKAFSL 195

Query: 267 YKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            + M  T        T   ++ + +     DK+      + N            L + Y 
Sbjct: 196 LEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYG 255

Query: 326 KNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLSHR--GIDSVVREMESAKVRWN 382
           K   F+ ++    ++  R G+ E  VW +     A   S +   ++    + +SA +  N
Sbjct: 256 KAKRFAEMESTLLEML-REGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPN 314

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           + T NI+L +Y K + ++ +  ++  +   H    IVT  ++ DA    F   G L+  +
Sbjct: 315 IKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDA----FGRAGDLKQME 370

Query: 443 RIGFLFKTVEINTDPLVLA----VYGK-------GHFLRYCE 473
            +  L ++  I    + L      YG+       G  LR+ E
Sbjct: 371 YLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIE 412


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P +E Y  II    K G   +A   L  M   +
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+A+G+  +Y+E  +    M   G +P   T++ L+  FA  GL+K  E
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESE 512

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                ++   +     T  A ++AY   G  ++  K Y  +  SR     D   +  E  
Sbjct: 513 AILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC----DPDERTLEAV 568

Query: 325 IKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +  Y F+RL D       +  AS I  + + +C+ L  +        ++ ++ EM S +V
Sbjct: 569 LSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G  ++  + F EM+     P    YN +I  + + G F E +   ++M E N
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P  +TY+G+I A GK  ++++    L+ M  +   P    Y  +I+ F  A L +   
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M     +    T  ++L ++   G++ + E    RL++S  P   D      E Y
Sbjct: 478 VAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAY 537

Query: 325 IKNYMF 330
            +   F
Sbjct: 538 KQGGKF 543



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 58/407 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L  EGL+++ +  F EM    +  S+  Y ++I+ Y + G++  +L  L+ MK   
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK 206

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I A  +  + ++ +      M+ +G  PD +TYN L+   A  GL    
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEA 266

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYM----NFGMLDKMEKFYKRL--LNSRTPLKE-DL 316
           E  +++M           +V  L  Y      FG L ++EK    L  + S   L +   
Sbjct: 267 EMVFRTM-------NDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---- 372
              L E Y K+        +   + +  G T       +L +  L    G    VR    
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQA-AGCTPNANTYSVLLN--LFGQSGRYDDVRQLFL 376

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-GILY------ 425
           EM+S+    +  T NI++  + +   FK +  L  ++   +++PD+ T  GI++      
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436

Query: 426 ---DARRI--------------GFDGT----GALEMWKRIGFLFKTV-EINTDPLV---- 459
              DAR+I               + G     G   +++     F T+ E+ ++P +    
Sbjct: 437 LHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFH 496

Query: 460 --LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK 504
             L  + +G  ++  E + S L      + R T+   I+   K  GK
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIE-AYKQGGK 542



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 2/236 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA-FQE 164
           + A+I     + R     ++ D  KN EK   +      +I      GL  E +   F E
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAE 237

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    ++P +  YN+++   +  G  +EA +    M +  + P   TY  L++ +GK + 
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +++   L  M   G  PD  +YN+L++ +A +G +K   G +  M        ++T   
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +L+ +   G  D + + +  + +S T         L EV+ +   F  +  L  D+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 15/340 (4%)

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSI 180
           I +  D++KN  K  +N+F    +       G  + ++R F+ M+     KP+  IY  +
Sbjct: 92  IARCLDIFKN--KLSLNDF--ALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIM 147

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I    + G  ++ L   +EM    +S    +Y  LI AYG+   Y+     L  MK +  
Sbjct: 148 ISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207

Query: 241 SPDHITYNLLIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           SP  +TYN +I   A  GL  + + G +  M  + +     T   +L A    G+ D+ E
Sbjct: 208 SPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSH 358
             ++ + +            L E + K     ++ DL  ++AS     ++  + + L ++
Sbjct: 268 MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAY 327

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A   S +    V  +M++A    N  T +++L  + +   +  +R L  E+ + +  PD 
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLF-KTVEINTDP 457
            T  IL     I   G G    +K +  LF   VE N +P
Sbjct: 388 ATYNIL-----IEVFGEGGY--FKEVVTLFHDMVEENIEP 420


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 136/318 (42%), Gaps = 39/318 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+   C+   + + ++  +E++   LKP+   YNSII    K G+  EA   L  MK   
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 205 LSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + P +  Y  LI  +GK       YK++DE       MK     PD +TY  +I     A
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDE-------MKRKKIVPDFVTYTSMIHGLCQA 405

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--------SR 309
           G +      +  ML+K +     T  A++D Y   G + +    + +++         + 
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           T L + L  K  EV I N +   + + G  L   +          L++  C + +  I+ 
Sbjct: 466 TALVDGLC-KCGEVDIANELLHEMSEKG--LQPNVCTYN-----ALINGLCKVGN--IEQ 515

Query: 370 VVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            V+   EM+ A    +  T   I+ AY KM +      LL  +  + ++P IVT  +L +
Sbjct: 516 AVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMN 575

Query: 427 ARRIGFDGTGALEMWKRI 444
               GF  +G LE  +R+
Sbjct: 576 ----GFCMSGMLEDGERL 589



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 1/275 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     +I   C+ G M+EA     +M    L P++  Y +++ G  K G+ + A   L
Sbjct: 426 DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELL 485

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM E  L P   TY+ LI    K    ++    ++ M L G  PD ITY  ++  +   
Sbjct: 486 HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM 545

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G + +     + ML K +     T   +++ +   GML+  E+  K +L+          
Sbjct: 546 GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTF 605

Query: 318 RKLAEVY-IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
             L + Y I+N M + ++      A  +      + + +  H    + +    + +EM  
Sbjct: 606 NSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVE 665

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
                   + N ++  + K K F+  R L  E+ T
Sbjct: 666 KGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRT 700



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 117/284 (41%), Gaps = 1/284 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +LC+ G ++EA     +ME     P +  Y+ I+ GY ++ +  + L  + E++   
Sbjct: 258 ILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKG 317

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ +I    K     E +  L++MK     PD++ Y  LI  F  +G +    
Sbjct: 318 LKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEY 377

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M  K++     T  +++      G + +  K +  +L+      E     L + Y
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVREMESAKVRWNV 383
            K         L + +  +     +V    L+   C      I + ++ EM    ++ NV
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            T N ++    K+ + +    L+ E+      PD +T   + DA
Sbjct: 498 CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDA 541


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 45/314 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +     I  LC+E  +EEA     ++    L P+   YN++I G    G  ++A  + +E
Sbjct: 288 YTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDE 347

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    +     TY+ LI A    K  +E +  +K M+  G  PD +TYN+ I  +   G 
Sbjct: 348 MMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGN 407

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM----EKFYKRLLNSRTPLKED 315
            K+    +  M+ K +     T  +++D    FG  ++M    EKF K +     P   D
Sbjct: 408 AKKALSLFDEMVEKNIRPTVETYTSLIDV---FGKRNRMSEAEEKFKKSIKEGMLP---D 461

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           ++           MF+ L D G  +   I R       +LL               +EM+
Sbjct: 462 II-----------MFNALID-GHCVNGNIDRA-----FQLL---------------KEMD 489

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
           +AKV  +  T N ++  Y + +  +  + LL E+  R +KPD ++   L        D  
Sbjct: 490 NAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMK 549

Query: 436 GALEMWKR---IGF 446
            ALE++     +GF
Sbjct: 550 DALEVFDEMLSLGF 563



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            I + F + K ++ +++  +E     ++   C E  +EEA +   EM+   +KP    YN
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYN 536

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GYSK G   +AL   +EM  +   P   TY+ LIQ Y K    D  +  L+ M+  
Sbjct: 537 TLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSK 596

Query: 239 GCSPDHITYNLLIQ 252
           G +PD  TY  +I+
Sbjct: 597 GITPDDSTYLYVIE 610



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  +   M EA   F++     + P + ++N++I G+   G  + A   L EM    
Sbjct: 433 LIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK 492

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ L+Q Y + +  +E    L  MK  G  PDHI+YN LI  ++  G +K   
Sbjct: 493 VVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDAL 552

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             +  ML+        T  A++  Y   G  D  E+  + +
Sbjct: 553 EVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREM 593



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++ A +  +EM+   + P    +N+++ GY +  K  EA   L+EMKE  + P  
Sbjct: 473 CVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDH 532

Query: 210 DTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            +Y+ LI  Y K   M D +++  +M+ L G  P  +TYN LIQ ++  G     E   +
Sbjct: 533 ISYNTLISGYSKRGDMKDALEVFDEMLSL-GFDPTLLTYNALIQGYSKIGEADHAEELLR 591

Query: 269 SMLTKRMHLRSSTMVAILDA 288
            M +K +    ST + +++A
Sbjct: 592 EMQSKGITPDDSTYLYVIEA 611



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 105/272 (38%), Gaps = 44/272 (16%)

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY- 219
            ++EM    +K S+  +N +I+   + GK+ +A  F+  M+   + P   TY+ +I  Y 
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 220 --GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             GK++   +I    K MK     PD  TYN  I        ++   G    +L   +  
Sbjct: 264 LRGKFEAASKI---FKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVP 320

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
            + T  A++D   N G LDK   +   ++N                              
Sbjct: 321 NAVTYNALIDGCCNKGDLDKAFAYRDEMMNR----------------------------- 351

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLK 395
                  G    V+   LL HA  L  R    + +++EM    V  +V T NI +  Y +
Sbjct: 352 -------GIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCR 404

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             + K    L  E+  ++++P + T   L D 
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDV 436



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G M++A+  F EM      P+L  YN++I GYSKIG+ + A   L EM+   
Sbjct: 538 LISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKG 597

Query: 205 LSPQSDTYDGLIQA 218
           ++P   TY  +I+A
Sbjct: 598 ITPDDSTYLYVIEA 611


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 137/330 (41%), Gaps = 15/330 (4%)

Query: 119 SRQIPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +R++ +   ++K I  S   + +      +I   C+ G +E+A++    MEG    P++ 
Sbjct: 161 ARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 220

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+S++HG  K G  ++AL     M      P   TY  LI         D   + +  M
Sbjct: 221 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
               C PD ++YN L+  +   G ++  +  +K M TK       T   ++  + N   L
Sbjct: 281 TATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340

Query: 296 DKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           ++  +F    + +   +  D+V    +   Y +   F    +   ++ +R      V   
Sbjct: 341 EE-ARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYS 399

Query: 354 RLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            L+   C      +D    V++ M + +V  +V T N ++ A  ++ D      LL  + 
Sbjct: 400 SLIDGLCKAGR--VDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMA 457

Query: 411 TRHVKPDIVTIGILYDARRIGFDGTGALEM 440
              ++P +VT   L +    GF  TG +E+
Sbjct: 458 AHGLEPGMVTYTTLLE----GFSRTGRMEI 483



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 16/311 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-M 203
           II   C+   +++A+  F++M  F + P+   YN +++G  K    ++A   L EM++  
Sbjct: 13  IIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGK 71

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +++P   TY  +I  + K    D   ++  +M+  DG +PD +TY  ++      G + R
Sbjct: 72  SVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDR 131

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKL 320
                + M  K +     T  A++  + N   +D+  K YK +L S +  K D+V    L
Sbjct: 132 ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS-SSWKPDVVTYTAL 190

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAK 378
            + + K+    +   +   +  R     +V    LL   C      + +D + R M S  
Sbjct: 191 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD-LFRRMTSKG 249

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
              NV T   ++            R+L+ E+      PD V+   L D    G+   G +
Sbjct: 250 CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD----GYCRLGRI 305

Query: 439 EMWKRIGFLFK 449
           E  K+   LFK
Sbjct: 306 EEAKQ---LFK 313



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K +E S +  FNS  +IG LC  G M+EA +    M    L+P +  Y +++ G+S+ G+
Sbjct: 424 KRVEPS-VGTFNS--VIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 480

Query: 190 FNEALLFLNEMK--------EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
              A      M+          NL P+   +  LI+   K +  D+    ++ ++   C 
Sbjct: 481 MEIAYELFEVMRKKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECE 539

Query: 242 P 242
           P
Sbjct: 540 P 540


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 5/198 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC+   M++A R  ++M     +P+   YNS+IHGYS  G +NE++    +
Sbjct: 261 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 320

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-- 257
           M    + P  D  +  I A  K+   +E       M L G  PD I+Y+ ++  +A A  
Sbjct: 321 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATD 380

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             L  +   +  MLTK +         +++AY   GM+DK    ++ + N    +  D V
Sbjct: 381 SCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG--MIPDTV 438

Query: 318 RKLAEVYIKNYMFSRLDD 335
              A V        RLDD
Sbjct: 439 -TFATVISSLCRIGRLDD 455



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 123/303 (40%), Gaps = 16/303 (5%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R N      +I      G+  E+VR F++M    + P+++  NS IH   K G+ NEA 
Sbjct: 291 TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 350

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL-------KMMKLDGCSPDHITY 247
              + M      P   +Y  ++  Y         D CL        +M   G +P+   +
Sbjct: 351 CIFDSMVLKGPKPDIISYSTMLHGYAT-----ATDSCLADVHNIFNLMLTKGIAPNKHVF 405

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI  +A  G++ +    ++ M  K M   + T   ++ +    G LD     +  +++
Sbjct: 406 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 465

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-- 364
              P  E +   L +    +    +  +L  ++ ++ I    + +   ++++ C      
Sbjct: 466 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 525

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            G D ++  M     R NV T N ++  Y  + + +    LL  + +  ++P+    G L
Sbjct: 526 EGKD-IMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 584

Query: 425 YDA 427
            D 
Sbjct: 585 VDG 587



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K+I    +  F+S  II  LC+EG + E       M     +P++  +NS++ GY  +
Sbjct: 499 MNKDIPPPGVKYFSS--IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLV 556

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA   L+ M  + + P    Y  L+  Y K    D+     + M   G  P  + Y
Sbjct: 557 GNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLY 616

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++++      GL +    T    +   M + S T V+I
Sbjct: 617 SIILH-----GLFQARRTTAAKKMFHEM-IESGTTVSI 648



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   I G + ++G +++A   F EM    + P + I NSII    K+ + ++A   +
Sbjct: 190 DDFSYSLIYGFV-KDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIV 248

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  ++P   TY  +I    K K  D+ +  L+ M   G  P+ ITYN LI  ++ +
Sbjct: 249 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 308

Query: 258 GLLKRMEGTYKSM 270
           G+       +K M
Sbjct: 309 GMWNESVRVFKQM 321



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+G+ K G+ ++A     EM E  + P+    + +I+   K K  D+ +  ++ M   
Sbjct: 195 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 254

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD  TY+L+I     +  + + E   + M+       S T  +++  Y   GM ++ 
Sbjct: 255 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 314

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-- 356
            + +K++ +       D          K+   +    + D +  +  + +++    +L  
Sbjct: 315 VRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHG 374

Query: 357 ----SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
               + +CL     + ++   M +  +  N    NI++ AY +        ++  ++  +
Sbjct: 375 YATATDSCLAD---VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 431

Query: 413 HVKPDIVTIG-ILYDARRIG 431
            + PD VT   ++    RIG
Sbjct: 432 GMIPDTVTFATVISSLCRIG 451



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 38/184 (20%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMW-KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +F ++I  L    R  +   + DM  +  ++  +  FNS  ++   C  G MEEA     
Sbjct: 510 YFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS--LMEGYCLVGNMEEAFALLD 567

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA- 218
            M    ++P+  IY +++ GY K G+ ++AL    +M    + P S  Y     GL QA 
Sbjct: 568 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 627

Query: 219 -----------------------YG-------KYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                  YG       +    DE +M L+ +       D IT+N
Sbjct: 628 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 687

Query: 249 LLIQ 252
           ++I 
Sbjct: 688 IVIS 691


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           K  + SR + ++FD  + +   R NE     +I   C++GLM EA +   EM      PS
Sbjct: 359 KAGNLSRAV-EIFDQMR-VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPS 416

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN+++HGY  +G+  EA+  L  M E  L P   +Y  +I  + + +   +     +
Sbjct: 417 VVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKE 476

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M   G  PD +TY+ LIQ       L      ++ M+ + +     T  ++++AY   G
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536

Query: 294 MLDKMEKFYKRLL 306
            L K  + +  ++
Sbjct: 537 ELSKALRLHDEMV 549



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 70/174 (40%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I  LC +G M E     +EM G  L P    YN++++G+ K G  ++ L+ L
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    LSP   TY  LI    K             M++ G  P+  TY  LI  F   
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQK 395

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           GL+         M+         T  A++  Y   G + +     + ++    P
Sbjct: 396 GLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 2/182 (1%)

Query: 129 WKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
            + +EK  I  N      +I   C++  ++EA+   + M    +  +L  YNS+I+G   
Sbjct: 230 MRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCG 289

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+ +E    + EM+   L P   TY+ L+  + K     +  + L  M   G SP+ +T
Sbjct: 290 KGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVT 349

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y  LI     AG L R    +  M  + +     T   ++D +   G++++  K    ++
Sbjct: 350 YTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMI 409

Query: 307 NS 308
            S
Sbjct: 410 VS 411



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 7/269 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A R F++M    + P++  YN II G    G   + L F+ +M++  +SP   TY+ L
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I A  K K   E    L+ M + G + + I+YN +I      G +  +    + M  K +
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                T   +++ +   G L +       ++             L     K    SR  +
Sbjct: 309 VPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILL 391
           + D +  R  R        L+   C    +G+ +    V+ EM  +    +V T N ++ 
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFC---QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVH 425

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            Y  +   +    +L  +  R + PD+V+
Sbjct: 426 GYCFLGRVQEAVGILRGMVERGLPPDVVS 454



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 127/303 (41%), Gaps = 19/303 (6%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +N     +  +N   II  +  +G +E+ +   ++ME   + P++  YN++I    K
Sbjct: 197 DMVRNGVSPNVYTYNV--IIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHI 245
             K  EA+  L  M    ++    +Y+ +I    GK +M  E+   ++ M+  G  PD +
Sbjct: 255 KKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRM-SEVGELVEEMRGKGLVPDEV 313

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TYN L+  F   G L +       M+ K +     T   +++     G L +  + + ++
Sbjct: 314 TYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQM 373

Query: 306 ------LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
                  N RT     L+    +  + N  +  L ++   + S  G +  V     L H 
Sbjct: 374 RVRGLRPNERT--YTTLIDGFCQKGLMNEAYKVLSEM---IVS--GFSPSVVTYNALVHG 426

Query: 360 -CLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C L   +    ++R M    +  +V + + ++  + + ++      +  E+  + V PD
Sbjct: 427 YCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPD 486

Query: 418 IVT 420
            VT
Sbjct: 487 TVT 489



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 118 RSRQIPQVFDMWKN-IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R R++ + F M +  +EK  + +      +I  LC +  + EA   F+EM    L P   
Sbjct: 464 RERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEV 523

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y S+I+ Y   G+ ++AL   +EM +    P + TY  LI    K          L  +
Sbjct: 524 TYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583

Query: 236 KLDGCSPDHITYNLLIQE---------------FACAGLLKRMEGTYKSMLTKRMHLRSS 280
             +   PD +TYN LI+                F   GL+   +  +K+ML +     ++
Sbjct: 584 FYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAA 643

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNS 308
               ++  +   G + K    Y  L +S
Sbjct: 644 IYNLMIHGHSRGGNVHKAYNLYMELEHS 671



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 132 IEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IE    NEF S + ++   C +GLM EA R F+ M     KP+  IYN +IHG+S+ G  
Sbjct: 599 IENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNV 658

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           ++A     E++  + +  +     L++A  +  M DE+   L+
Sbjct: 659 HKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ 701



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 17/224 (7%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +++ + FD+++ + +  +  +E     +I   C +G + +A+R   EM      P    Y
Sbjct: 501 QKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTY 560

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY---------------DGLIQAYGKY 222
           + +I+G +K  +   A   L ++      P   TY               +GL++ +   
Sbjct: 561 SVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMK 620

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
            + +E D   K M      P+   YNL+I   +  G + +    Y  +        +  +
Sbjct: 621 GLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAV 680

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +A++ A    GM D++ +  + +L S       + + L EV  K
Sbjct: 681 IALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFK 724



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-----GKYKMYDE 227
           S  +++ ++   S++G   +AL  L+       +P   +Y+ ++ A        ++ YD+
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +   + M  +G SP+  TYN++I+     G L++  G  + M  + +     T   ++D
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 288 A 288
           A
Sbjct: 251 A 251


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 28/296 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G++  A+  F+ ME     P+   Y S+I+G  +  K ++A+  + +M+E  
Sbjct: 464 IIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDG 523

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P    Y  LIQ   K   +D      +MM+ +G +PD   YN+L      +G   R E
Sbjct: 524 ITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSG---RAE 580

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVR 318
             Y  ++ K + L   T  +++D +   G  D      ++++N     K D      L++
Sbjct: 581 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGC--KADLYTYSVLLQ 638

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-------HRGIDSVV 371
            L +    N   S LD +             V C  ++++  ++S       H    S+ 
Sbjct: 639 ALCKQKKLNEALSILDQM---------TVSGVKC-NIVAYTIIISEMIKEGKHDHAKSLF 688

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            EM S+  + + TT  + + +Y K+   +    L+ E+    V PD+VT  I  + 
Sbjct: 689 NEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFING 744



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + + +    ++  LC++  + EA+    +M    +K ++  Y  II    K GK + 
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A    NEM      P + TY   I +Y K    +E +  +  M+ DG +PD +TY++ I 
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFIN 743

Query: 253 EFACAGLLKRMEGTYKSML 271
                G + R   T K M+
Sbjct: 744 GCGHMGYMDRAFSTLKRMV 762



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG + +A     EM    + PS+  YN++I GY K G+  +AL     M++  
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNG 349

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            +P   TY+ LI      K+ DE +  L      G +P  IT+  LI  +
Sbjct: 350 CNPDDWTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGY 398



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 160/401 (39%), Gaps = 59/401 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +++A+R    M     K  L+ Y  +I+   K  +  EA   LNEM    
Sbjct: 394 LINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG 453

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF-------ACA 257
           L+P    Y  +I  Y K  M        K+M+ +GC P+  TY  LI             
Sbjct: 454 LAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAM 513

Query: 258 GLLKRME--GTYKSMLTKRMHLRSSTMVAILD-AYMNFGMLDKM-----EKFYKRLLNS- 308
            L+ +M+  G    ++     ++        D A+  F M++K      E+ Y  L ++ 
Sbjct: 514 ALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDAL 573

Query: 309 -RTPLKED----LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC- 360
            ++   E+    LVRK   V  K    S +D       S+ G T+    L  ++++  C 
Sbjct: 574 CKSGRAEEAYSFLVRK-GVVLTKVTYTSLVDGF-----SKAGNTDFAAVLIEKMVNEGCK 627

Query: 361 ------------LLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
                       L   + ++   S++ +M  + V+ N+    II+   +K     H + L
Sbjct: 628 ADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSL 687

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVY-- 463
            +E+ +   KP   T  +   +    +   G +E  + +    +   +  D +   ++  
Sbjct: 688 FNEMISSGHKPSATTYTVFISS----YCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFIN 743

Query: 464 GKGHFLRYCEEVYSSLE---PYSREKKRWTYQNLIDLVIKH 501
           G GH + Y +  +S+L+     S E   WTY     L++KH
Sbjct: 744 GCGH-MGYMDRAFSTLKRMVDASCEPNCWTYW----LLLKH 779



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 101 WTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEF--------------NSQKI 145
           WT   +W +++ FLK S  +        MW  IE + + +                   I
Sbjct: 771 WT---YWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSI 827

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+   +EEA      M G A+ P+ EIY  +I     I  F + + F+ +M E   
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGF 887

Query: 206 SPQSDTYDGLIQAYGKYKMYD 226
            PQ ++Y  LI        YD
Sbjct: 888 QPQLESYHYLIVGLCDEGDYD 908



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 18/302 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G +  A R F  +    ++      N+++ GY +     +A   L  M  M      
Sbjct: 190 CKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  LIQ   + +   E  + + MM  DGCS +   Y LLI+     G +    G    
Sbjct: 250 YSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDE 309

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IK 326
           M  + +     T  A++D Y   G +       K  L  +  ++++        Y   I 
Sbjct: 310 MPLRGVVPSVWTYNAMIDGYCKSGRM-------KDALGIKALMEQNGCNPDDWTYNSLIY 362

Query: 327 NYMFSRLDDLGDDLASRIGR--TELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRW 381
                +LD+  + L   I R  T  V     L +    + R ID  +R    M S+  + 
Sbjct: 363 GLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAER-IDDALRVKSNMISSNCKL 421

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALEM 440
           ++    +++   +K    K  +  L+E+    + P++V    + D   ++G  G  ALE+
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVG-AALEV 480

Query: 441 WK 442
           +K
Sbjct: 481 FK 482


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 37/286 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E G ME+A +  Q+M+   LKPS   YN++I GY   GK +E++  L+ 
Sbjct: 145 FNA--LINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDL 202

Query: 200 MK-EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M  E N+ P   TY+ LI+A  K +   E    +  M   G  PD +T+N +   +A  G
Sbjct: 203 MSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNG 262

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
              + E     M    +     T   I+  Y   G + +  +F  R+        +DL  
Sbjct: 263 KTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRM--------KDLGM 314

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           +   + + + +   +D                          ++   G+D V++ ME  +
Sbjct: 315 QPNLIVLNSLVNGFVD--------------------------MMDRDGVDEVLKLMEEFQ 348

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +R +V T + I+ A+ +    +  + + + +    VKPD     IL
Sbjct: 349 IRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSIL 394



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 2/176 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           V+ M  +  +  +  FN+  I     + G   +A     EM+  +LKP+      II GY
Sbjct: 236 VYKMTASGMQPDVVTFNT--IATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGY 293

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            + GK  EAL F+  MK++ + P     + L+  +      D +D  LK+M+     PD 
Sbjct: 294 CREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDV 353

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
           ITY+ ++  ++ AG L++ +  Y +ML   +   +     +   Y+    ++K E+
Sbjct: 354 ITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEE 409



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 152/373 (40%), Gaps = 52/373 (13%)

Query: 114 KNSSRSRQIPQVFDMWKN---IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           K ++   Q    F M KN   I +SR       K++ +L + G  +EA+  FQ +     
Sbjct: 50  KATNSGSQPSCTFCMGKNDCQIVRSRT------KVMNILIKSGKPQEAIVIFQNLIEGGH 103

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +PSL  Y ++++  +    F      ++ ++E  + P S  ++ LI A+ +    ++   
Sbjct: 104 QPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKK 163

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRM--EGTYKSML-TKRMHLRS- 279
            ++ MK  G  P   TYN LI+ +  AG       LL  M  EG  K  L T  M +R+ 
Sbjct: 164 VVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRAL 223

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLG 337
             M  I +A+            YK   +   P   D+V    +A  Y +N   ++ + + 
Sbjct: 224 CKMENISEAW---------NVVYKMTASGMQP---DVVTFNTIATAYAQNGKTAQAEAMI 271

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYL 394
            ++     +     C  ++S  C      +   +R    M+   ++ N+   N ++  ++
Sbjct: 272 LEMQRNSLKPNERTCTIIISGYC--REGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFV 329

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN 454
            M D   +  +L  +    ++PD++T   + +A             W + GFL K  EI 
Sbjct: 330 DMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNA-------------WSQAGFLEKCKEIY 376

Query: 455 TDPLVLAVYGKGH 467
            + L   V    H
Sbjct: 377 NNMLKSGVKPDAH 389



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 85/194 (43%), Gaps = 2/194 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + +N   ++    + +M +N  K   NE     II   C EG ++EA+R    M+   ++
Sbjct: 258 YAQNGKTAQAEAMILEMQRNSLKP--NERTCTIIISGYCREGKVQEALRFVYRMKDLGMQ 315

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+L + NS+++G+  +   +     L  M+E  + P   TY  ++ A+ +    ++    
Sbjct: 316 PNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEI 375

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              M   G  PD   Y++L + +  A  +++ E     M    +H        ++  + +
Sbjct: 376 YNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCS 435

Query: 292 FGMLDKMEKFYKRL 305
            G +D   + + ++
Sbjct: 436 VGRMDNAMRVFDKM 449



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 121/292 (41%), Gaps = 6/292 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + EA     +M    ++P +  +N+I   Y++ GK  +A   + EM+  +
Sbjct: 219 LIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNS 278

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   T   +I  Y +     E    +  MK  G  P+ I  N L+  F        ++
Sbjct: 279 LKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVD 338

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K M   ++     T   I++A+   G L+K ++ Y  +L S           LA+ Y
Sbjct: 339 EVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGY 398

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRW 381
           ++     + +++   +        +V    ++S  C +    +D+ +R   +M    V  
Sbjct: 399 VRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGR--MDNAMRVFDKMGEFGVSP 456

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI-GF 432
           N+ T   ++  Y + K       +L  +   HV+P   TI ++ +A R  GF
Sbjct: 457 NLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGF 508



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 59/119 (49%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME+A      M    + P++ I+ ++I G+  +G+ + A+   ++M E  +SP   T++ 
Sbjct: 404 MEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFET 463

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI  Y + K   + +  L++M+     P   T  L+ + +  AG  +R +   +++  K
Sbjct: 464 LIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGFKERAKTLLRTVKAK 522


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 5/199 (2%)

Query: 120 RQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           R+   +FD M K   K  IN +NS  ++   C++G M+EAV+ + EM     KP++  Y 
Sbjct: 418 REALNLFDRMKKAGVKPSINTYNS--LLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYI 475

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++ GY     F+ A   L+EMK+  +S    TY+ LI          E+D  LK    +
Sbjct: 476 TLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSE 535

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P  +TYN +I  F  AG++      Y+ M  K +     T  + +D Y   G  D  
Sbjct: 536 GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMA 595

Query: 299 EKFYKRLLNSRTPLKEDLV 317
            K    +   R  L+ D+V
Sbjct: 596 LKMLNDV--RRRGLQPDIV 612



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 15/290 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++  +CE   ++  +++F   EGF   P++  YNSII+G+ K G    A     +
Sbjct: 513 INGICMVDRVCE---VDGMLKSFMS-EGFI--PTMMTYNSIINGFVKAGMMGSAFTVYQQ 566

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM---KLDGCSPDHITYNLLIQEFAC 256
           M+E  L P   TY   I  Y +       DM LKM+   +  G  PD + YN LI  F  
Sbjct: 567 MREKGLPPNIITYTSFIDGYCRTGCS---DMALKMLNDVRRRGLQPDIVAYNALINGFCQ 623

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +         +L   +   +    +++  Y N  M+ ++ KFY+ ++          
Sbjct: 624 EGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTST 683

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREM 374
              L + + K+   +   +L  ++ ++ G     +    L+H    S    G   ++ EM
Sbjct: 684 YTTLIDGFSKDGNVAFALELYSEMMAK-GYIPDAFTFTALTHGLCRSGDIDGAKKLLEEM 742

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               VR NV   N+++  YL+    +    L  E+    ++PD  T  IL
Sbjct: 743 RRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDIL 792



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C+   + EA+  F  M+   +KPS+  YNS++ GY K G  +EA+   +E
Sbjct: 402 FTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSE 461

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY  L++ Y   K +D     L  MK +G S +  TYN+LI        
Sbjct: 462 MPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDR 521

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           +  ++G  KS +++       T  +I++ ++  GM+      Y+++     P
Sbjct: 522 VCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLP 573



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R++ +    ++    +EG+ E+AVR F EM G  + P   +Y   I    K+G    AL 
Sbjct: 189 RVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALR 248

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            L EMKE+       TY  ++    K    +E
Sbjct: 249 MLREMKEVGFDTCDFTYRTMVDVLVKTGRMEE 280


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 26/349 (7%)

Query: 118 RSRQIPQVFDMWKNIEKSR------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + +Q  Q  +++ ++ + R      +  F S  II +    G +E+    F  M    +K
Sbjct: 87  KVKQYGQAIEIFSSMREKRSECRPDVVTFTS--IIHLYSVRGQIEDCKAVFSTMLAEGIK 144

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P++  YN++I  Y+  G   EA    +EMK     P   +Y  LI  +G+ +        
Sbjct: 145 PNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREV 204

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
             MMK + C P+ ++YN L+  +   G L +     + M    +H    ++  +L A   
Sbjct: 205 FDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 264

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYM----FSRLDDLGDDLASRIGR 346
           FG    ++        S   L+   +  +A    I +YM    + +  +L   + ++  +
Sbjct: 265 FGQKVNIDSVL-----SAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTK 319

Query: 347 TELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
            + V    L+S  C +S +       +EM   ++  +    + ++ AY K         L
Sbjct: 320 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 379

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN 454
            + L      PD+VT   + +A         A EMW+++  L++ +E N
Sbjct: 380 FNSLKGSGCCPDLVTYTAMINAY-------SASEMWEKVCALYQEMEAN 421



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N       IG     G  E+A+  ++ ME    KP    +  +I G  ++ K+ EAL F
Sbjct: 285 LNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCF 344

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EM ++ +   S+ Y  +I AY K     + +     +K  GC PD +TY  +I  ++ 
Sbjct: 345 FKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSA 404

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           + + +++   Y+ M    + L S    A++ A+
Sbjct: 405 SEMWEKVCALYQEMEANNIQLDSIACSALMKAF 437



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 110/274 (40%), Gaps = 9/274 (3%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE--MNLSPQSDTYDG 214
           +A+  F+ M+G  ++P     N +IH   K+ ++ +A+   + M+E      P   T+  
Sbjct: 58  KALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTS 117

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  Y      ++       M  +G  P+ ++YN LI  +A  G+ K     +  M  KR
Sbjct: 118 IIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEM--KR 175

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLV--RKLAEVYIKN-YMF 330
                  +V+       FG   +  +  +   +  R   K +LV    L + Y  N Y+ 
Sbjct: 176 SGF-CPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLP 234

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             +D L +     I    +  C  L +         IDSV+   E   +  N    N  +
Sbjct: 235 QAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAI 294

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +Y+ + +++    L   +  +  KPD VT  IL
Sbjct: 295 GSYMNIGEYEKAINLYRSMENKTTKPDSVTFTIL 328



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 27/273 (9%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + PS   +N++I+     G + EAL    +M +  + P   T++ ++ AY     Y +  
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--TMVAILD 287
              ++MK     PD  T N++I          +    + SM  KR   R    T  +I+ 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYM----FSRLDDLGDDLA 341
            Y   G ++  +  +  +L     +K ++V    L   Y  + M    FS  D++     
Sbjct: 121 LYSVRGQIEDCKAVFSTML--AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEM----- 173

Query: 342 SRIGRTELVWCLRLLSHACLLSHRG-------IDSVVREMESAKVRWNVTTANIILLAYL 394
            R G     +C  ++S+  L+S  G          V   M+  K + N+ + N ++ AY 
Sbjct: 174 KRSG-----FCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYG 228

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                     +L E+    + P++V+I  L  A
Sbjct: 229 SNGYLPQAVDILREMEQDGIHPNVVSICTLLAA 261


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+  K+I   + N      ++     EGL E+A   F+EM+    +P +  YN+++  
Sbjct: 103 KVFNEMKSI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 161

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           YS+ G    A    + M+ M   P   +Y+ L+ AYG+  ++++ +   + +K  G SP 
Sbjct: 162 YSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPT 221

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             ++ LL+   A +G   R E     +    +   +  + A+L+AY   G LD ME+ + 
Sbjct: 222 MKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFA 281

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLL 362
             +  R              Y +     R++     +A+R    ++V W  R+ ++A   
Sbjct: 282 -AMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRK 340

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            +     +V EM  A    +  TA ++L A    +  + +  ++  +   H KP
Sbjct: 341 EYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSM---HKKP 391



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 111/287 (38%), Gaps = 3/287 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM    + P+  +YN+ + G  K     +A+     MK       +
Sbjct: 23  CNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 82

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +T+  +I  YGK K           MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 83  ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 142

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G+     + +  + +            L + Y +  +
Sbjct: 143 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 202

Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               + + ++L  R +  T     L L +HA   +    + V+ ++  + +  +    N 
Sbjct: 203 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 262

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG 434
           +L AY +      +  L + +  R    D+ T  +  +A  R G+ G
Sbjct: 263 MLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAGYVG 308



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           C P   TY LL++ +  AG L R EG    M    +   ++   A LD  +     +K  
Sbjct: 8   CVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAV 67

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y+R+   R     +    +  VY K         + +++ S IG    +     L +A
Sbjct: 68  EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKS-IGCKPNICTYTALVNA 126

Query: 360 CLLSHRGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
              +  G+    + V  EM+ A    +V   N ++ AY +    +    + S +     +
Sbjct: 127 --FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 184

Query: 416 PDIVTIGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           PD  +  IL DA  R G   D     E  K+ G    +  + +  L+LA + +      C
Sbjct: 185 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGM---SPTMKSHMLLLAAHARSGNATRC 241

Query: 473 EEVYSSL 479
           EEV + L
Sbjct: 242 EEVMAQL 248


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  K G    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   + E+ Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       + +   +A++     L+    L+   C    + ID    ++
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  + TT N ++  +  + D      LL E+ +  + PDIVT   L D     
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE +      L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 122/304 (40%), Gaps = 28/304 (9%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C++  ++ A   F  M      P+L  +N++I GY    + ++ +  L
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +EM E  L   + TY+ LI  +G Y + D    +D+ L+ M   G  PD +T + L+   
Sbjct: 419 HEMTETGLVADTTTYNTLI--HGFYLVGDLNAALDL-LQEMISSGLCPDIVTCDTLLDGL 475

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSS-----------TMVAILDAYMNFGMLDKMEKFYK 303
              G LK     +K M   +  L +S           T   ++   +N G   + E+ Y+
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHAC 360
            + +            + +   K    SRLD+   + D + S+     +V    L++  C
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQ---SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 361 LLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
                 +D  +    EM    +  N  T   ++  + K+ +      +  E+ +  V PD
Sbjct: 593 KAGR--VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 IVTI 421
            +TI
Sbjct: 651 TITI 654



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 66/346 (19%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  + +++HG     + +EAL F ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T+  L+    +     E    L  M  DG  P  ITY  ++      G+ K+ +   
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD-----GMCKKGDTVS 237

Query: 268 KSMLTKRM----HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              L ++M    H+  + ++  AI+D+    G     +  +       T ++E  +    
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI--FP 288

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           +++  N M               GR    W     S A        + +++EM   K+  
Sbjct: 289 DLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERKISP 323

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +V T N ++ A++K   F     L  E+  R + P+ +T   + D 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369


>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Glycine max]
          Length = 515

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 134/324 (41%), Gaps = 48/324 (14%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           K+I ML +    E+A   FQ M  EG  L    E Y +++  YS+ G  ++A   L EMK
Sbjct: 162 KLIVMLGKCKQPEKAHELFQAMVDEGCVL--DCESYTALLSAYSRSGLLDKAFSLLEEMK 219

Query: 202 EM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
                 P   TY  L+++  +   +D+I   L  M   G  P+ +TYN LI  +  A   
Sbjct: 220 NTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKF 279

Query: 261 KRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
             ME     ML  R       TM + L A+ N G ++ MEK Y++  N            
Sbjct: 280 SEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQN------------ 327

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
            A +      F+ L D                     S+     ++ + +V+  M+    
Sbjct: 328 -AGIQPNVQTFNILLD---------------------SYGKAQDYKKMSAVMEYMQKYHY 365

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            W + T NI++ A+ K  D K +  L   + +  +KP  VT+  L  A    +   G  E
Sbjct: 366 SWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA----YARAGKPE 421

Query: 440 MWKRIGFLFKTVEINTDPLVLAVY 463
              +I  + + VE N+D L+  V+
Sbjct: 422 ---KISGVLRFVE-NSDVLLDTVF 441



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 147/337 (43%), Gaps = 17/337 (5%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEE 152
           L H+  W K      I+ +    + +Q  +  ++++ +  E   ++  +   ++      
Sbjct: 146 LLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRS 205

Query: 153 GLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL+++A    +EM+     +P ++ Y+ ++    ++  F++    L++M    + P + T
Sbjct: 206 GLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVT 265

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y+ LI AYGK + + E++  L  M  D  C PD  T N  ++ F   G ++ ME  Y+  
Sbjct: 266 YNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKF 325

Query: 271 LTKRMHLRSSTMVAILDAYMNF-------GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               +     T   +LD+Y           +++ M+K++         +  D   K  ++
Sbjct: 326 QNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDL 385

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
               Y+F  +       + RI  + +  C  + ++A       I  V+R +E++ V  + 
Sbjct: 386 KQMEYLFRLMR------SERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDT 439

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              N ++ AY ++     ++ +L  +     KPDIVT
Sbjct: 440 VFFNCLVDAYARLGCLAEMKGVLEMMKQNGCKPDIVT 476



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 137/345 (39%), Gaps = 66/345 (19%)

Query: 128 MWKNIEKSRIN----------EFNSQKIIGMLCEEGL--------MEEAVRAFQEM-EGF 168
           +W+   K+ I+            NS+K++     E L         E A++ F+ + E  
Sbjct: 92  LWREATKAMIDKSGGGRKKKGPINSKKLLPRTVLEALHERVTALRWESALKVFELLHEQI 151

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             KP   +Y  +I    K  +  +A      M +       ++Y  L+ AY +  + D+ 
Sbjct: 152 WYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKA 211

Query: 229 DMCLKMMK-LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
              L+ MK   GC PD  TY++L++         +++     M  + +   + T   ++D
Sbjct: 212 FSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLID 271

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN---YMFSRLDDLGDDLASRI 344
           AY       +ME                LV  LA+ Y +     M S L   G+     I
Sbjct: 272 AYGKARKFSEMESI--------------LVEMLADRYCQPDVWTMNSTLRAFGN-----I 312

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           G+ E                  ++    + ++A ++ NV T NI+L +Y K +D+K +  
Sbjct: 313 GQIE-----------------TMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSA 355

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFK 449
           ++  +   H    IVT  I+ DA    F   G L   K++ +LF+
Sbjct: 356 VMEYMQKYHYSWTIVTFNIVIDA----FGKAGDL---KQMEYLFR 393



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 89/188 (47%), Gaps = 4/188 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E   + +++ +   ++P+++ +N ++  Y K   + +    +  M++ + S    T+
Sbjct: 313 GQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTF 372

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I A+GK     +++   ++M+ +   P  +T   L++ +A AG  +++ G  + +  
Sbjct: 373 NIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVEN 432

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             + L +     ++DAY   G L +M+   + +   +   K D+V       IK Y +  
Sbjct: 433 SDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMM--KQNGCKPDIV--TYRTMIKTYTYKG 488

Query: 333 LDDLGDDL 340
           +D    +L
Sbjct: 489 MDSHAKEL 496


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 11/293 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C++  +  A +AF+EM+   LKP++  YNS+I+G    GK  EA+   
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLW 331

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M  + L P   TY+ LI  + K KM  E       +      P+ IT+N +I  +   
Sbjct: 332 DKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKE 391

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME-KFYKRLLN--SRTPLKE 314
           G+++       SML + +    ST   ++      G+  K + +  K LLN      LK 
Sbjct: 392 GMMEEGFSLCSSMLDEGILPNVSTYNCLIA-----GLCRKQDLQAAKELLNEMENKGLKG 446

Query: 315 DLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVV 371
           D+V    L +   KN      + L +++ +   +   V    L+   C+    +   +V 
Sbjct: 447 DVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVR 506

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             ME  + + NV T N+++  Y K+   +    LL+E+  + + P+  T  I+
Sbjct: 507 TRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 26/326 (7%)

Query: 118 RSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +  +I  V  ++K + K RI    N FN    I  LC  G + +A  A ++M+ + + P+
Sbjct: 177 KENKIGDVEYVYKEMIKRRIHTNLNTFNI--FINGLCRAGKLNKAEDAIEDMKAWGISPN 234

Query: 174 LEIYNSIIHGYSK---IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +  YN+++ GY K    GK  +A  F+ EM    + P   T++ LI  + K +       
Sbjct: 235 VVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKK 294

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             + M+  G  P+ +TYN LI      G L+     +  M+   +     T  A+++ + 
Sbjct: 295 AFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFC 354

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
              M+ +  K +  +  S+  L  +++    + + Y K  M       G  L S +    
Sbjct: 355 KKKMMKEATKVFDDV--SKQELVPNVITFNTMIDAYCKEGMMEE----GFSLCSSMLDEG 408

Query: 349 LVWCLRLLSHACLLSH-------RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           ++    + ++ CL++        +    ++ EME+  ++ +V T NI++    K    ++
Sbjct: 409 ILP--NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRN 466

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA 427
              LL+E+    +KP+ VT   L D 
Sbjct: 467 AEKLLNEMFNLGLKPNHVTYNTLMDG 492



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L +E  + +    ++EM    +  +L  +N  I+G  + GK N+A   + +MK   
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 205 LSPQSDTYDGLIQAYGKY----KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           +SP   TY+ L+  Y K     KMY + +  +K M  +   P+ +T+N LI  F     +
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMY-KAEAFMKEMLANKICPNEVTFNTLIDGFCKDENV 289

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--R 318
              +  ++ M  + +     T  ++++   N G L++    + +++     LK ++V   
Sbjct: 290 AAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVG--LGLKPNIVTYN 347

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMES 376
            L   + K  M      + DD++ +     ++    ++   C   +   G  S+   M  
Sbjct: 348 ALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF-SLCSSMLD 406

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +  NV+T N ++    + +D +  + LL+E+  + +K D+VT  IL D 
Sbjct: 407 EGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG 457



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+      A +   EM    LKP+   YN+++ GY   GK   AL     M++  
Sbjct: 454 LIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ LI+ Y K    +  +  L  M   G +P+  TY+++  E    G    +E
Sbjct: 514 KQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKGFSPDIE 573

Query: 265 G 265
           G
Sbjct: 574 G 574


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  K G    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   + E+ Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       + +   +A++     L+    L+   C    + ID    ++
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  + TT N ++  +  + D      LL E+ +  + PDIVT   L D     
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE +      L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 118/300 (39%), Gaps = 20/300 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C++  ++ A   F  M      P+L  +N++I GY    + ++ +  L
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +EM E  L   + TY+ LI  +G Y + D    +D+ L+ M   G  PD +T + L+   
Sbjct: 419 HEMTETGLVADTTTYNTLI--HGFYLVGDLNAALDL-LQEMISSGLCPDIVTCDTLLDGL 475

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSS-----------TMVAILDAYMNFGMLDKMEKFYK 303
              G LK     +K M   +  L +S           T   ++   +N G   + E+ Y+
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            + +            + +   K         + D + S+     +V    L++  C   
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595

Query: 364 H--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
               G++ +  EM    +  N  T   ++  + K+ +      +  E+ +  V PD +TI
Sbjct: 596 RVDDGLE-LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 66/346 (19%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  +N+++HG     + +EAL   ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T+  L+    +     E    L  M  DG  P  ITY  ++      G+ K+ +   
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD-----GMCKKGDTVS 237

Query: 268 KSMLTKRM----HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              L ++M    H+  + ++  AI+D+    G     +  +       T ++E  +    
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI--FP 288

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           +++  N M               GR    W     S A        + +++EM   K+  
Sbjct: 289 DLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERKISP 323

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +V T N ++ A++K   F     L  E+  R + P+ +T   + D 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  K G    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   + E+ Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       + +   +A++     L+    L+   C    + ID    ++
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  + TT N ++  +  + D      LL E+ +  + PDIVT   L D     
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE +      L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 118/300 (39%), Gaps = 20/300 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C++  ++ A   F  M      P+L  +N++I GY    + ++ +  L
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +EM E  L   + TY+ LI  +G Y + D    +D+ L+ M   G  PD +T + L+   
Sbjct: 419 HEMTETGLVADTTTYNTLI--HGFYLVGDLNAALDL-LQEMISSGLCPDIVTCDTLLDGL 475

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSS-----------TMVAILDAYMNFGMLDKMEKFYK 303
              G LK     +K M   +  L +S           T   ++   +N G   + E+ Y+
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            + +            + +   K         + D + S+     +V    L++  C   
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595

Query: 364 H--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
               G++ +  EM    +  N  T   ++  + K+ +      +  E+ +  V PD +TI
Sbjct: 596 RVDDGLE-LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 66/346 (19%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  +N+++HG     + +EAL   ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T+  L+    +     E    L  M  DG  P  ITY  ++      G+ K+ +   
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD-----GMCKKGDTVS 237

Query: 268 KSMLTKRM----HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              L ++M    H+  + ++  AI+D+    G     +  +       T ++E  +    
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI--FP 288

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           +++  N M               GR    W     S A        + +++EM   K+  
Sbjct: 289 DLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERKISP 323

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +V T N ++ A++K   F     L  E+  R + P+ +T   + D 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 114/249 (45%), Gaps = 1/249 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F++++   L+P + +YN+++  YS+ G    A    + M+ M 
Sbjct: 327 LVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMG 386

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ ++ AYG+  ++ + +   + MK  G +P   ++ LL+  ++ A  + + E
Sbjct: 387 CEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCE 446

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K M    +   +  + ++L+ Y   G   KMEK    + N            L  +Y
Sbjct: 447 AIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIY 506

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            K     R+++L  +L  +  R ++V W  R+ +++    +     V  EM  +    + 
Sbjct: 507 GKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDG 566

Query: 384 TTANIILLA 392
            TA ++L A
Sbjct: 567 GTAKVLLSA 575



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 5/279 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I G++  +G  EEA+  FQ M+    KP+ E YN +I+ Y K  K   +     EM+   
Sbjct: 257 IEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQ 316

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L+ A+ +  + ++ +   + ++ DG  PD   YN L++ ++ AG      
Sbjct: 317 CKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAA 376

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAE 322
             +  M         ++   ++DAY   G+    E  ++ +  L     +K  ++  L  
Sbjct: 377 EIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHML--LLS 434

Query: 323 VYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
            Y K    ++ + +  +++   +     V    L  +  L     ++ ++ EME+     
Sbjct: 435 AYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA 494

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +++T NI++  Y K    + +  L  EL  ++ +PD+VT
Sbjct: 495 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 533



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 138/368 (37%), Gaps = 94/368 (25%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKP---SLEIYNSIIHGYSK-IGKFNEALLFLNEM 200
           +I   C  GL+E A     EM+   + P    + +YN+ I G  K  G   EA+     M
Sbjct: 218 LIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRM 277

Query: 201 KEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           K     P ++TY+ +I  YGK       +K+Y E       M+   C P+  TY  L+  
Sbjct: 278 KRDRCKPTTETYNLMINLYGKASKSYMSWKLYCE-------MRSHQCKPNICTYTALVNA 330

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           FA  GL ++ E  ++ +    +        A++++Y   G                    
Sbjct: 331 FAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGY------------------- 371

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLG--DDLAS------RIGRTELVWCLRLLSHACLLSHR 365
                     Y    +FS +  +G   D AS        GR  L              H 
Sbjct: 372 ---------PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL--------------HS 408

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             ++V  EM+   +   + +  ++L AY K +D      ++ E+    V+PD   +  + 
Sbjct: 409 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM- 467

Query: 426 DARRIGFDGTGALEMWKRIGFLFK-------------TVEINTDPLVLAVYGKGHFLRYC 472
                       L ++ R+G   K             T +I+T  +++ +YGK  FL   
Sbjct: 468 ------------LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERI 515

Query: 473 EEVYSSLE 480
           EE++  L+
Sbjct: 516 EELFVELK 523



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   S++R + +   + K + ++ +  + F    ++ +    G   +  +   EME   
Sbjct: 432 LLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP 491

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
               +  YN +I+ Y K G          E+KE N  P   T+   I AY + K+Y +  
Sbjct: 492 CTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCL 551

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACA 257
              + M   GC+PD  T  +L+   AC+
Sbjct: 552 EVFEEMIDSGCAPDGGTAKVLLS--ACS 577



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +++ +  P    ++ LI AYG+   Y E +     +      P   TY LLI+ +  AGL
Sbjct: 168 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 227

Query: 260 LKRMEGTYKSMLTKRMHLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++R E     M  +  H+   T+ V + +AY+  G++ K +   +  ++    +K D  +
Sbjct: 228 IERAEVVLVEM--QNHHVSPKTIGVTVYNAYIE-GLM-KRKGNTEEAIDVFQRMKRDRCK 283

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC------------LLSH 364
              E Y          +L  +L  +  ++ + W L   + SH C              + 
Sbjct: 284 PTTETY----------NLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 333

Query: 365 RGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            G+    + +  +++   +  +V   N ++ +Y +         + S +     +PD  +
Sbjct: 334 EGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 393

Query: 421 IGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
             I+ DA  R G   D     E  KR+G       + +  L+L+ Y K   +  CE +  
Sbjct: 394 YNIMVDAYGRAGLHSDAEAVFEEMKRLGI---APTMKSHMLLLSAYSKARDVTKCEAIVK 450

Query: 478 SLEPYSREKKRWTYQNLIDL 497
            +     E   +   ++++L
Sbjct: 451 EMSENGVEPDTFVLNSMLNL 470


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC EG + EAV     M    L+P+   Y +I+ G  K G    AL 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M+E++ + P    Y  +I +  K   + +       M+  G  PD  TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G     E   + ML +++     T  A+++A++  G   + E+ Y  +L        
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNT 360

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VV 371
                + + + K       + +   +A++     L+    L+   C    + ID    ++
Sbjct: 361 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC--GAKRIDDGMELL 418

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM    +  + TT N ++  +  + D      LL E+ +  + PDIVT   L D     
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 432 FDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGKGHFLRYCEEVYSSL 479
                ALEM+K +            F  VE +      L+  +  +G FL   EE+Y  +
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE-AEELYEEM 537

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
                     TY ++ID + K +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQS 560



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 118/300 (39%), Gaps = 20/300 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C++  ++ A   F  M      P+L  +N++I GY    + ++ +  L
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +EM E  L   + TY+ LI  +G Y + D    +D+ L+ M   G  PD +T + L+   
Sbjct: 419 HEMTETGLVADTTTYNTLI--HGFYLVGDLNAALDL-LQEMISSGLCPDIVTCDTLLDGL 475

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSS-----------TMVAILDAYMNFGMLDKMEKFYK 303
              G LK     +K M   +  L +S           T   ++   +N G   + E+ Y+
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            + +            + +   K         + D + S+     +V    L++  C   
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595

Query: 364 H--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
               G++ +  EM    +  N  T   ++  + K+ +      +  E+ +  V PD +TI
Sbjct: 596 RVDDGLE-LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 131/346 (37%), Gaps = 66/346 (19%)

Query: 109 VIRFLKNSSRSRQIPQVFD-------------------MWKNIEKSRI--NEFNSQKIIG 147
            I    +  RSR +P V D                   +++ +E+ +I  + ++   +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
             C    +  A+  F ++    L P +  + +++HG     + +EAL   ++M E    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T+  L+    +     E    L  M  DG  P  ITY  ++      G+ K+ +   
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD-----GMCKKGDTVS 237

Query: 268 KSMLTKRM----HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              L ++M    H+  + ++  AI+D+    G     +  +       T ++E  +    
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF-------TEMQEKGI--FP 288

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           +++  N M               GR    W     S A        + +++EM   K+  
Sbjct: 289 DLFTYNSMIVGF--------CSSGR----W-----SDA--------EQLLQEMLERKISP 323

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +V T N ++ A++K   F     L  E+  R + P+ +T   + D 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 2/194 (1%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           + +   FD++  +E   I  + F    +I  LC  G   +A R   +M    + P++  +
Sbjct: 270 KHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS+I  ++K GK  EA    +EM + ++ P   TY+ LI  +  +   DE      +M  
Sbjct: 330 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             C PD +TYN LI+ F  A  ++     ++ M  + +   + T   ++      G  D 
Sbjct: 390 KDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 449

Query: 298 MEKFYKRLLNSRTP 311
            +K +K++++   P
Sbjct: 450 AQKIFKKMVSDGVP 463



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 118/288 (40%), Gaps = 34/288 (11%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC+ G ++ A+   ++ME   ++ ++ IYN+II G  K    ++A    N+
Sbjct: 222 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNK 281

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   + P   TY+ LI     Y  + +    L  M     +P+ +T+N LI  FA  G 
Sbjct: 282 METKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGK 341

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L   E  +  M+ + +     T  ++++ +     LD+ ++ +  +++            
Sbjct: 342 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC--------- 392

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           L +V   N +       G   A R+                     G++ + REM    +
Sbjct: 393 LPDVVTYNTLIK-----GFCKAKRV-------------------EEGME-LFREMSQRGL 427

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             N  T N ++    +  D    + +  ++ +  V PDI+T  IL D 
Sbjct: 428 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 475



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 2/183 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +      +  FNS  +I    +EG + EA + F EM   ++ P++  YNS+I+G+  
Sbjct: 316 DMIERKINPNVVTFNS--LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 373

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             + +EA      M   +  P   TY+ LI+ + K K  +E     + M   G   + +T
Sbjct: 374 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 433

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN LIQ    AG     +  +K M++  +     T   +LD    +G L+K    ++ L 
Sbjct: 434 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 493

Query: 307 NSR 309
            S+
Sbjct: 494 KSK 496



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 127 DMWKNIEKSRINEFNSQKIIGM------LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           DM + I K  +++     II        LC+ G +E+A+  F+ ++   ++P++  YN +
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I G  K GK  +       +    + P    Y  +I  + +  + +E D   + MK DG 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 241 SPDHITYNLLIQ-------EFACAGLLKRM 263
            PD   YN LI+       + A A L+K M
Sbjct: 568 LPDSGCYNTLIRARLRDGDKAASAELIKEM 597



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 112/290 (38%), Gaps = 48/290 (16%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++   C    +  A+    +M     +P +   +S+++GY    + +EA+  +
Sbjct: 115 NHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 174

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M EM   P + T++ LI     +    E    +  M   GC PD  TY  ++      
Sbjct: 175 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN----- 229

Query: 258 GLLKRMEGTYKSMLTKRMH---LRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
           GL KR +      L K+M    + ++ ++   I+D    +  +D     + ++      +
Sbjct: 230 GLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM--ETKGI 287

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW--CLRLLSHACLLSHRGIDSV 370
           K D       V+  N + S L + G             W    RLLS             
Sbjct: 288 KPD-------VFTYNSLISCLCNYGR------------WSDASRLLS------------- 315

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             +M   K+  NV T N ++ A+ K         L  E+  R + P+IVT
Sbjct: 316 --DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT 363



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 3/172 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F ++I       +  +  ++FD M +      I  +NS  +I   C    ++EA + F  
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS--LINGFCMHDRLDEAQQIFTL 386

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P +  YN++I G+ K  +  E +    EM +  L   + TY+ LIQ   +   
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            D      K M  DG  PD ITY++L+      G L++    ++ +   +M 
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +EE +  F+EM    L  +   YN++I G  + G  + A     +M    
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 461

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           + P   TY  L+    KY   ++  +  + ++     P+  TYN++I+    AG
Sbjct: 462 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAG 515


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 176/447 (39%), Gaps = 49/447 (10%)

Query: 14  NTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCC-LSSAPSLDY--HSTKHTTLLVES 70
           ++H  V   +  KN L+   V      I  P       +S   + +  H+T+    ++E 
Sbjct: 74  SSHGLVVAKRKPKNALSSKEVMAVLNSILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEI 133

Query: 71  YHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWK 130
              H+ +  ++   N   +   QI++ D     + +  + + L      RQ P  F   +
Sbjct: 134 LRIHRRVGDMVVVFNLMQN---QIIKRD----LNTYLIIFKGLFIRGGLRQTPFAFGKMR 186

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
                 +N ++   +I +L + GL  EA+  ++ M    LKPSL+ +++++    K    
Sbjct: 187 E-AGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDT 245

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
                 L EM+ + L P   TY   I+  G+    DE    +K M+ DGC PD +TY +L
Sbjct: 246 ETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVL 305

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR------ 304
           I     AG L      +  M          T + +LD + + G L ++++F+        
Sbjct: 306 IDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY 365

Query: 305 ---------LLNSRTPLKE--------DLVRK---LAEVYIKNYMFS------RLDDLGD 338
                    L+N+              D++RK   L  ++  N + S      RLDD  D
Sbjct: 366 APDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALD 425

Query: 339 --DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW---NVTTANIILLAY 393
             +    +G     +   L       S R  D  +   E  K+R    N+   N  L + 
Sbjct: 426 LFNNMETLGVVPTAYTYILFIDFYGKSGRS-DKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +M   +  +V+ + L +  + PD VT
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVT 511



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           I  L   S    + +V + W  +E      +      ++  LC+ G ++EA      M  
Sbjct: 338 ITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRK 397

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P+L  YN++I G  ++ + ++AL   N M+ + + P + TY   I  YGK    D+
Sbjct: 398 QGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDK 457

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + MK+ G +P+ +  N  +   A  G L+  +  +  + +  +   S T   ++ 
Sbjct: 458 ALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMK 517

Query: 288 AYMNFGMLDK 297
            Y   G +D+
Sbjct: 518 CYSKAGQVDE 527



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 67/141 (47%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++G LCE G +++A+  F++++   L      YN +I G  +  +  EAL   +EM+   
Sbjct: 971  LVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG 1030

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            ++P   TY+ LI   G   M ++     + ++  G  P+  TYN LI+ ++ +G      
Sbjct: 1031 INPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAY 1090

Query: 265  GTYKSMLTKRMHLRSSTMVAI 285
              YK M+       + T   +
Sbjct: 1091 AVYKRMMVGGCSPNTGTFAQL 1111



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R  ++    D++ N+E   +    +     I    + G  ++A+  F++M+   + P++ 
Sbjct: 416 RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIV 475

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N+ ++  +++G+  EA +  N +K   L+P S TY+ +++ Y K    DE    L  M
Sbjct: 476 ACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM 535

Query: 236 KLDGCSPDHITYNLLIQEFACAG 258
             + C PD I  N LI     AG
Sbjct: 536 SENQCEPDIIVINSLINTLYKAG 558



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 143/346 (41%), Gaps = 58/346 (16%)

Query: 113 LKNSSRSRQIPQVF----DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +K  S++ Q+ +      DM +N  +  I   NS  +I  L + G ++EA + F  ++  
Sbjct: 516 MKCYSKAGQVDEAIELLSDMSENQCEPDIIVINS--LINTLYKAGRVDEAWKMFCRLKDM 573

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P++  YN++I G  K G+   A+     M      P + T++ ++    K    DE+
Sbjct: 574 KLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKN---DEV 630

Query: 229 DMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY------KSMLTKRMHLRS 279
           D+ LKM   M    C PD +T+N +I       + KR+          K MLT       
Sbjct: 631 DLALKMLYKMTTMNCMPDVLTFNTIIHGLV---IEKRVSDAIWLFHQMKKMLTP----DC 683

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            T+  +L   +  G+   ME  +K        + ED V +L  VY+    +   +DL   
Sbjct: 684 VTLCTLLPGVVKNGL---MEDAFK--------IAEDFVHRLG-VYVDRRFW---EDLMGG 728

Query: 340 LASRIGRTELVW------CLRLLSHACLL--------SHR----GIDSVVREMESAKVRW 381
           + ++ G  + +       C R+     +L         H+         +R  +   V+ 
Sbjct: 729 ILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKP 788

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            + + N ++  +L + + +    L +E+      PD+ T  +L DA
Sbjct: 789 TLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDA 834



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 145 IIGMLCE--EGLMEEAV--RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           II +LC+  + L+ ++V  R  +E+    +KP+LE YN +I G+  +     A     EM
Sbjct: 760 IIKVLCKHKQALVAQSVFIRFTKEL---GVKPTLESYNFLIEGFLGVHNDEMAWNLFTEM 816

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           K    +P   TY+ L+ A+GK    +E+    + M    C P+ IT+N++I     +  L
Sbjct: 817 KNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSL 876

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            +    +  +++        T   +LD  +  G L++ ++ ++ +++
Sbjct: 877 DKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 1/223 (0%)

Query: 84   LNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
            L+K +     ++  D   T   +  ++  L  S R  +  ++F+   +    R N     
Sbjct: 876  LDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDY-GCRPNNAIYN 934

Query: 144  KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
             +I    + G +  A   F+ M    ++P L+ Y S++    + G+ ++AL +  ++K+ 
Sbjct: 935  ILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQT 994

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             L   S  Y+ +I   G+    +E       M+  G +PD  TYN LI     AG++++ 
Sbjct: 995  GLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054

Query: 264  EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
               Y+ +    +     T  A++  Y   G  D     YKR++
Sbjct: 1055 GKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMM 1097



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 7/181 (3%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           I F   S RS +  + F+  K I     N       +  L E G + EA   F  ++   
Sbjct: 446 IDFYGKSGRSDKALETFEKMK-IRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI- 228
           L P    YN ++  YSK G+ +EA+  L++M E    P     + LI    K    DE  
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAW 564

Query: 229 -DMC-LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
              C LK MKL   +P  +TYN LI      G ++R    + SM        + T   IL
Sbjct: 565 KMFCRLKDMKL---APTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTIL 621

Query: 287 D 287
           D
Sbjct: 622 D 622



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 117  SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             RS +I +   ++  ++   IN   F    +I  L   G++E+A + ++E++   L+P++
Sbjct: 1011 GRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNV 1070

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
              YN++I GYS  G  + A      M     SP + T+
Sbjct: 1071 FTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 2/149 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L    +S +I ++F++++ +     + N      II  L +   +++A+  F ++    
Sbjct: 831 LLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGD 890

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+   Y  ++ G  K G+  EA     EM +    P +  Y+ LI  +GK    +   
Sbjct: 891 FSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTAC 950

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAG 258
              K M  +G  PD  +Y  L+     AG
Sbjct: 951 ELFKRMVREGIRPDLKSYTSLVGCLCEAG 979


>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
 gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
          Length = 484

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 133/318 (41%), Gaps = 31/318 (9%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA-LLFLN 198
           FN+  +I   C EG MEEA+R  QEM     +P+   YN++I GY   G+  +A  L L+
Sbjct: 90  FNT--VINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLH 147

Query: 199 EMKEMNLSPQSD------------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            + +   SP S+            T + L+ A+ +    +E    + M+K  G  PD +T
Sbjct: 148 LLNKTRNSPSSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVT 207

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL- 305
           YN L + +A AG +  +E     M   R+     T   ++  Y   GM ++  +   RL 
Sbjct: 208 YNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLK 267

Query: 306 ---LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
              L+        L++  ++   +      + DL      R   T     +   S A + 
Sbjct: 268 FEGLHPDVVAFNTLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMA 327

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV--- 419
                 +++ EM+  +V+ +V    I+   Y++         LL ++    V P++V   
Sbjct: 328 DK--AQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYT 385

Query: 420 -------TIGILYDARRI 430
                  ++G + DA R+
Sbjct: 386 TIISGWCSMGRMDDALRV 403



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 3/226 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +++R  P   D  + + +  +   N+  ++   C EG +EEA R    ++   ++P    
Sbjct: 150 NKTRNSPSSEDGLEPVARPNLRTMNT--LLNAWCREGRLEEAWRVVAMIKSAGMQPDAVT 207

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++   Y+  G+  E    + +MK   L P   TY  LI  Y +  M +     L  +K
Sbjct: 208 YNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLK 267

Query: 237 LDGCSPDHITYNLLIQEFACAGLLK-RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            +G  PD + +N L++ ++     + ++E     M    +    +T   I++ + + GM 
Sbjct: 268 FEGLHPDVVAFNTLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMA 327

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           DK +     +   R          LA+ Y+++      + L  D++
Sbjct: 328 DKAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMS 373



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 129/315 (40%), Gaps = 22/315 (6%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEID 229
           +PS+E Y   I       K +EA   L +M+E + L+P S  ++ +I  +      +E  
Sbjct: 48  RPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAM 107

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--------- 280
             ++ M+   C P   TYN LI+ +  AG  ++ +     +L K  +  SS         
Sbjct: 108 RVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVAR 167

Query: 281 ----TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
               TM  +L+A+   G L++  +    + ++           LA+ Y      + L+DL
Sbjct: 168 PNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDL 227

Query: 337 GDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
             D+ +   +  L     L+S  C   +  RG+  + R ++   +  +V   N +L  Y 
Sbjct: 228 IADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSR-LKFEGLHPDVVAFNTLLKGYS 286

Query: 395 KMKDFK-HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI 453
           +  D +  L ++L  +    V+PD+ T   + +     +   G  +  + I    +   +
Sbjct: 287 QENDQQLKLEMVLDLMAANGVRPDVTTYSTIMN----WWSSAGMADKAQTILLEMQQDRV 342

Query: 454 NTDPLVLAVYGKGHF 468
             D    A+  KG+ 
Sbjct: 343 KPDVRAFAILAKGYV 357


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC+   M++A R  ++M     +P+   YNS+IHGYS  G +NE++    +
Sbjct: 205 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 264

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-- 257
           M    + P  D  +  I A  K+   +E       M L G  PD I+Y+ ++  +A A  
Sbjct: 265 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATD 324

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             L  +   +  MLTK +         +++AY   GM+DK    ++ + N
Sbjct: 325 SCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 374



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 123/303 (40%), Gaps = 16/303 (5%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R N      +I      G+  E+VR F++M    + P+++  NS IH   K G+ NEA 
Sbjct: 235 TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 294

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL-------KMMKLDGCSPDHITY 247
              + M      P   +Y  ++  Y         D CL        +M   G +P+   +
Sbjct: 295 CIFDSMVLKGPKPDIISYSTMLHGYAT-----ATDSCLADVHNIFNLMLTKGIAPNKHVF 349

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI  +A  G++ +    ++ M  K M   + T   ++ +    G LD     +  +++
Sbjct: 350 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 409

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-- 364
              P  E +   L +    +    +  +L  ++ ++ I    + +   ++++ C      
Sbjct: 410 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 469

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            G D ++  M     R NV T N ++  Y  + + +    LL  + +  ++P+    G L
Sbjct: 470 EGKD-IMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 528

Query: 425 YDA 427
            D 
Sbjct: 529 VDG 531



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K+I    +  F+S  II  LC+EG + E       M     +P++  +NS++ GY  +
Sbjct: 443 MNKDIPPPGVKYFSS--IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLV 500

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA   L+ M  + + P    Y  L+  Y K    D+     + M   G  P  + Y
Sbjct: 501 GNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLY 560

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++++      GL +    T    +   M + S T V+I
Sbjct: 561 SIILH-----GLFQARRTTAAKKMFHEM-IESGTTVSI 592



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   I G + ++G +++A   F EM    + P + I NSII    K+ + ++A   +
Sbjct: 134 DDFSYSLIYGFV-KDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIV 192

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  ++P   TY  +I    K K  D+ +  L+ M   G  P+ ITYN LI  ++ +
Sbjct: 193 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 252

Query: 258 GLLKRMEGTYKSM 270
           G+       +K M
Sbjct: 253 GMWNESVRVFKQM 265



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+G+ K G+ ++A     EM E  + P+    + +I+   K K  D+ +  ++ M   
Sbjct: 139 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 198

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD  TY+L+I     +  + + E   + M+       S T  +++  Y   GM ++ 
Sbjct: 199 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 258

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-- 356
            + +K++ +       D          K+   +    + D +  +  + +++    +L  
Sbjct: 259 VRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHG 318

Query: 357 ----SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
               + +CL     + ++   M +  +  N    NI++ AY +        ++  ++  +
Sbjct: 319 YATATDSCLAD---VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 375

Query: 413 HVKPDIVTIG-ILYDARRIG 431
            + PD VT   ++    RIG
Sbjct: 376 GMIPDTVTFATVISSLCRIG 395



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 38/184 (20%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMW-KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +F ++I  L    R  +   + DM  +  ++  +  FNS  ++   C  G MEEA     
Sbjct: 454 YFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS--LMEGYCLVGNMEEAFALLD 511

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA- 218
            M    ++P+  IY +++ GY K G+ ++AL    +M    + P S  Y     GL QA 
Sbjct: 512 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 571

Query: 219 -----------------------YG-------KYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                  YG       +    DE +M L+ +       D IT+N
Sbjct: 572 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 631

Query: 249 LLIQ 252
           ++I 
Sbjct: 632 IVIS 635


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC+   M++A R  ++M     +P+   YNS+IHGYS  G +NE++    +
Sbjct: 281 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 340

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-- 257
           M    + P  D  +  I A  K+   +E       M L G  PD I+Y+ ++  +A A  
Sbjct: 341 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATD 400

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             L  +   +  MLTK +         +++AY   GM+DK    ++ + N
Sbjct: 401 SCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 450



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 123/303 (40%), Gaps = 16/303 (5%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R N      +I      G+  E+VR F++M    + P+++  NS IH   K G+ NEA 
Sbjct: 311 TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 370

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL-------KMMKLDGCSPDHITY 247
              + M      P   +Y  ++  Y         D CL        +M   G +P+   +
Sbjct: 371 CIFDSMVLKGPKPDIISYSTMLHGYAT-----ATDSCLADVHNIFNLMLTKGIAPNKHVF 425

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI  +A  G++ +    ++ M  K M   + T   ++ +    G LD     +  +++
Sbjct: 426 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 485

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-- 364
              P  E +   L +    +    +  +L  ++ ++ I    + +   ++++ C      
Sbjct: 486 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 545

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            G D ++  M     R NV T N ++  Y  + + +    LL  + +  ++P+    G L
Sbjct: 546 EGKD-IMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 604

Query: 425 YDA 427
            D 
Sbjct: 605 VDG 607



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K+I    +  F+S  II  LC+EG + E       M     +P++  +NS++ GY  +
Sbjct: 519 MNKDIPPPGVKYFSS--IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLV 576

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA   L+ M  + + P    Y  L+  Y K    D+     + M   G  P  + Y
Sbjct: 577 GNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLY 636

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++++      GL +    T    +   M + S T V+I
Sbjct: 637 SIILH-----GLFQARRTTAAKKMFHEM-IESGTTVSI 668



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   I G + ++G +++A   F EM    + P + I NSII    K+ + ++A   +
Sbjct: 210 DDFSYSLIYGFV-KDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIV 268

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  ++P   TY  +I    K K  D+ +  L+ M   G  P+ ITYN LI  ++ +
Sbjct: 269 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328

Query: 258 GLLKRMEGTYKSM 270
           G+       +K M
Sbjct: 329 GMWNESVRVFKQM 341



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+G+ K G+ ++A     EM E  + P+    + +I+   K K  D+ +  ++ M   
Sbjct: 215 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD  TY+L+I     +  + + E   + M+       S T  +++  Y   GM ++ 
Sbjct: 275 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 334

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-- 356
            + +K++ +       D          K+   +    + D +  +  + +++    +L  
Sbjct: 335 VRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHG 394

Query: 357 ----SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
               + +CL     + ++   M +  +  N    NI++ AY +        ++  ++  +
Sbjct: 395 YATATDSCLAD---VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 451

Query: 413 HVKPDIVTIG-ILYDARRIG 431
            + PD VT   ++    RIG
Sbjct: 452 GMIPDTVTFATVISSLCRIG 471



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 38/184 (20%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMW-KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +F ++I  L    R  +   + DM  +  ++  +  FNS  ++   C  G MEEA     
Sbjct: 530 YFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS--LMEGYCLVGNMEEAFALLD 587

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA- 218
            M    ++P+  IY +++ GY K G+ ++AL    +M    + P S  Y     GL QA 
Sbjct: 588 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 647

Query: 219 -----------------------YG-------KYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                  YG       +    DE +M L+ +       D IT+N
Sbjct: 648 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 707

Query: 249 LLIQ 252
           ++I 
Sbjct: 708 IVIS 711


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 113/298 (37%), Gaps = 38/298 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++   C  G ++ A R    M    ++PSL  +N++++G  K G+  +A    
Sbjct: 189 NVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMF 248

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    L+P   +Y+ L+  Y K     E       M   G  PD +T+  LI     A
Sbjct: 249 DEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRA 308

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+R       M  + + +   T  A++D +   G LD      K +   R        
Sbjct: 309 GNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCY 368

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             L   Y K     R+D+  +                               ++ EME+ 
Sbjct: 369 NVLINGYCK---LGRMDEARE-------------------------------LIHEMEAK 394

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRIG 431
            ++ +V T + IL  Y K+ D      L  ++  + V PD +T    I  L + RR+G
Sbjct: 395 GMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+NEF    +I   C  G +++A+ A +EM    ++PS+  YN +I+GY K+G+ +EA  
Sbjct: 327 RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARE 386

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQ 252
            ++EM+   + P   TY  ++  Y K    D   ++  KM+K  G  PD ITY+ LI+
Sbjct: 387 LIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLK-KGVVPDAITYSSLIR 443



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 57/371 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N +    ++  LC  G  EEA+     +M G    P++  YN+++  + + G+ + A   
Sbjct: 153 NVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERL 212

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKY-------KMYDEIDMCLKMMKLDGCSPDHITYNL 249
           +  M+E  + P   T++ ++    K        KM+DE       M  +G +PD ++YN 
Sbjct: 213 VGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDE-------MAREGLTPDGVSYNT 265

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           L+  +  AG L      +  M  K +     T  +++ A    G L++      ++    
Sbjct: 266 LVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
             + E     L + + +N     LDD                         LL+      
Sbjct: 326 LRMNEFTFTALIDGFCRNGF---LDD------------------------ALLA------ 352

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG-ILYDAR 428
            ++EM   +++ +V   N+++  Y K+      R L+ E+  + +KPD+VT   IL    
Sbjct: 353 -MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 429 RIGFDGTGALEMWKRIGFLFKTV---EINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSRE 485
           +IG D   A E+ +++  L K V    I    L+  +  +      C E++  +     +
Sbjct: 412 KIG-DTDSAFELNRKM--LKKGVVPDAITYSSLIRGLCEERRLGDAC-ELFEKMLQLGLQ 467

Query: 486 KKRWTYQNLID 496
              +TY  LID
Sbjct: 468 PDEFTYTTLID 478



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+EA     EME   +KP +  Y++I+ GY KIG  + A     +M +  
Sbjct: 371 LINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKG 430

Query: 205 LSPQSDTYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P + TY  LI+    + ++ D  ++  KM++L G  PD  TY  LI      G +++ 
Sbjct: 431 VVPDAITYSSLIRGLCEERRLGDACELFEKMLQL-GLQPDEFTYTTLIDGHCKEGNVQKA 489

Query: 264 EGTYKSMLTK 273
              +  M+ K
Sbjct: 490 LSLHDEMIKK 499



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 23/201 (11%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  LCEE  + +A   F++M    L+P    Y ++I G+ K G   +AL   +EM +
Sbjct: 439 SSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIK 498

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-------------- 248
             + P   TY  LI    K     E    L  +  +   PD+I Y               
Sbjct: 499 KGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSV 558

Query: 249 -LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL- 306
             L++ F+  GL+ + +  Y+SML +   L  S    ++  +   G + K   F+K+LL 
Sbjct: 559 VALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLR 618

Query: 307 -----NSRTPLKEDLVRKLAE 322
                NS + +   LVR L E
Sbjct: 619 CGFSPNSTSTIS--LVRGLFE 637


>gi|326511196|dbj|BAJ87612.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 725

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 130/294 (44%), Gaps = 20/294 (6%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           S  +I + C+EG+ +EA+    EM    +  +  IYN+I++ Y K  +  EA     EMK
Sbjct: 346 SASLIKIFCDEGMKKEALIFQSEMGKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMK 405

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           E  L P   TY+ L+ AY +    + ++  L  M   G  P+  +YN LI  +   G  K
Sbjct: 406 EKGLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLGFQPNARSYNCLISAY---GRQK 462

Query: 262 RM----EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           +M    E  +  M    +   SS+  +++ AY   G  +K    Y  L   R  LK  L 
Sbjct: 463 KMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKAHIAY--LDMKREGLKPSLE 520

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRT-ELVWCLRLLSHACL--LSHRGIDSVVREM 374
              A + I    F R  +    + +    T E V C R+  H  L  L+  G+    R++
Sbjct: 521 TYTALLDI----FRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDV 576

Query: 375 --ESAKVRWNVT--TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             E  K+    T  T NI++ AY K      L  LL E+ T  +KPD VT   L
Sbjct: 577 ICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTL 630



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ + C+   +EEA   F EM+   LKP+   YN ++  YS+  +       L EM ++ 
Sbjct: 384 IMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLG 443

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P + +Y+ LI AYG+ K M ++ +     MK  G      +Y  LI  +A +G  ++ 
Sbjct: 444 FQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKA 503

Query: 264 EGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              Y  M  KR  L+ S  T  A+LD +   G  +K+ + +K + + +          + 
Sbjct: 504 HIAYLDM--KREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVL 561

Query: 322 EVYIKNYMFSRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +   K+ +F +  D+  +   +IG   T + + + + ++A    H  +  +++EM + ++
Sbjct: 562 DGLAKHGLFVQARDVICEFG-KIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLEL 620

Query: 380 RWNVTTANIILLAYLKMKDF 399
           + +  T + ++ AY +++DF
Sbjct: 621 KPDSVTYSTLIYAYARVRDF 640



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+    ++ + WK++  EK          ++  L + GL  +A     E     L P+  
Sbjct: 531 RAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAM 590

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y+K G+  +    L EM  + L P S TY  LI AY + + +       K M
Sbjct: 591 TYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQM 650

Query: 236 KLDGCSPDHITYNLLI 251
             +G  PD  +Y  L+
Sbjct: 651 VRNGQVPDAKSYRKLL 666



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 36/194 (18%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + E+A  AF  M+   +K +   Y S+I  Y+  G++ +A +   +MK   L P  +TY 
Sbjct: 464 MSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKAHIAYLDMKREGLKPSLETYT 523

Query: 214 GLIQAYGKY-----------KMYDEIDMCLKM---MKLDGCS------------------ 241
            L+  + +             M DE   C ++   M LDG +                  
Sbjct: 524 ALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKI 583

Query: 242 ---PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
              P  +TYN+L+  +A  G   ++    K M T  +   S T   ++ AY       + 
Sbjct: 584 GLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRA 643

Query: 299 EKFYKRLL-NSRTP 311
             ++K+++ N + P
Sbjct: 644 FYYHKQMVRNGQVP 657


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I      G +EEAV+ F+E+E  + KP +  +NS+I+   K G  +EA +   E
Sbjct: 473 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKE 532

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLI 251
           M+E  LSP   TY  LI+ +GK    D+++M  ++   M  +GCSP+ +TYN+L+
Sbjct: 533 MREEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEGCSPNIVTYNILL 584



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G   EA R F  M  F  +   + Y S++      GK  EAL  L+++ E  
Sbjct: 373 LVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKR 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +S  +  Y+ ++ A GK K   ++    + MK DG SPD  +YN+LI  F  AG
Sbjct: 433 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAG 486



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 87  KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE----FNS 142
           ++ C +     +GD  +D + +++  L ++ ++    +  D+   I + RI+     +N+
Sbjct: 388 RLFCNMWSFHDEGD--RDAYMSMLESLCDAGKT---TEALDLLSKIHEKRISTDTVMYNT 442

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  L +     +    +++M+     P +  YN +I  + + G+  EA+    E++ 
Sbjct: 443 --VLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELEN 500

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            +  P   +++ LI   GK    DE  M  K M+ +G SPD +TY+ LI+ F 
Sbjct: 501 SSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFG 553



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/337 (17%), Positives = 143/337 (42%), Gaps = 19/337 (5%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS    + F+++  + +   +++ F    ++  L ++  +++    F++M+    +P   
Sbjct: 237 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEY 296

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    KIGK +E+L    EM E   +P    Y+ +IQA    +M D+       M
Sbjct: 297 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 356

Query: 236 KLDGCSP--DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            ++  +   +   Y  L++  +  G        + +M +          +++L++  + G
Sbjct: 357 VVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAG 416

Query: 294 ----MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
                LD + K +++ +++ T +   ++  L ++   + +    + +  D     G +  
Sbjct: 417 KTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQD-----GPSPD 471

Query: 350 VWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           ++   +L  +   + R  ++V    E+E++  + ++ + N ++    K  D     +   
Sbjct: 472 IFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFK 531

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           E+    + PD+VT   L +     F  T  +EM  R+
Sbjct: 532 EMREEGLSPDVVTYSTLIEC----FGKTDKVEMACRL 564


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC+   M++A R  ++M     +P+   YNS+IHGYS  G +NE++    +
Sbjct: 119 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 178

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-- 257
           M    + P  D  +  I A  K+   +E       M L G  PD I+Y+ ++  +A A  
Sbjct: 179 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATD 238

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             L  +   +  MLTK +         +++AY   GM+DK    ++ + N
Sbjct: 239 SCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 288



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 123/303 (40%), Gaps = 16/303 (5%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R N      +I      G+  E+VR F++M    + P+++  NS IH   K G+ NEA 
Sbjct: 149 TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 208

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL-------KMMKLDGCSPDHITY 247
              + M      P   +Y  ++  Y         D CL        +M   G +P+   +
Sbjct: 209 CIFDSMVLKGPKPDIISYSTMLHGYAT-----ATDSCLADVHNIFNLMLTKGIAPNKHVF 263

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI  +A  G++ +    ++ M  K M   + T   ++ +    G LD     +  +++
Sbjct: 264 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 323

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-- 364
              P  E +   L +    +    +  +L  ++ ++ I    + +   ++++ C      
Sbjct: 324 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 383

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            G D ++  M     R NV T N ++  Y  + + +    LL  + +  ++P+    G L
Sbjct: 384 EGKD-IMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 442

Query: 425 YDA 427
            D 
Sbjct: 443 VDG 445



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K+I    +  F+S  II  LC+EG + E       M     +P++  +NS++ GY  +
Sbjct: 357 MNKDIPPPGVKYFSS--IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLV 414

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA   L+ M  + + P    Y  L+  Y K    D+     + M   G  P  + Y
Sbjct: 415 GNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLY 474

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++++      GL +    T    +   M + S T V+I
Sbjct: 475 SIILH-----GLFQARRTTAAKKMFHEM-IESGTTVSI 506



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   I G + ++G +++A   F EM    + P + I NSII    K+ + ++A   +
Sbjct: 48  DDFSYSLIYGFV-KDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIV 106

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  ++P   TY  +I    K K  D+ +  L+ M   G  P+ ITYN LI  ++ +
Sbjct: 107 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 166

Query: 258 GLLKRMEGTYKSM 270
           G+       +K M
Sbjct: 167 GMWNESVRVFKQM 179



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+G+ K G+ ++A     EM E  + P+    + +I+   K K  D+ +  ++ M   
Sbjct: 53  SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 112

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD  TY+L+I     +  + + E   + M+       S T  +++  Y   GM ++ 
Sbjct: 113 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 172

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-- 356
            + +K++ +       D          K+   +    + D +  +  + +++    +L  
Sbjct: 173 VRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHG 232

Query: 357 ----SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
               + +CL     + ++   M +  +  N    NI++ AY +        ++  ++  +
Sbjct: 233 YATATDSCLAD---VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 289

Query: 413 HVKPDIVTIG-ILYDARRIG 431
            + PD VT   ++    RIG
Sbjct: 290 GMIPDTVTFATVISSLCRIG 309



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 38/184 (20%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMW-KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +F ++I  L    R  +   + DM  +  ++  +  FNS  ++   C  G MEEA     
Sbjct: 368 YFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS--LMEGYCLVGNMEEAFALLD 425

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA- 218
            M    ++P+  IY +++ GY K G+ ++AL    +M    + P S  Y     GL QA 
Sbjct: 426 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 485

Query: 219 -----------------------YG-------KYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                  YG       +    DE +M L+ +       D IT+N
Sbjct: 486 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 545

Query: 249 LLIQ 252
           ++I 
Sbjct: 546 IVIS 549


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 17/374 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +GL+EEA      M G  LKP +  YN+II+G  K GK+  A   L+EM ++ 
Sbjct: 399 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 458

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP + TY+ L+    +     + +     M   G  PD ++++ LI   +  G L +  
Sbjct: 459 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 518

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M    +   +     ++  +   G++ +  K    +L     L       +    
Sbjct: 519 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGL 578

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNV 383
            K  M S  D+L  ++  R    +      L++      +      + EM   + ++ +V
Sbjct: 579 CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDV 638

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALE 439
            T N ++  + K  + + +  L +++ +R + P+ ++ GIL +    G+   G    A  
Sbjct: 639 VTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN----GYCNMGCVSEAFR 694

Query: 440 MWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           +W  +   GF    +  NT   ++  Y +       +E  S++          TY  LI+
Sbjct: 695 LWDEMVEKGFEATIITCNT---IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 751

Query: 497 LVIKHNGKNLDGTF 510
             IK   +N+D  F
Sbjct: 752 GFIKE--ENMDRAF 763



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 135/314 (42%), Gaps = 7/314 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+L + G +++A++ F++M+   L P   IY  +I G+ + G  +EAL   +EM E  
Sbjct: 504 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ ++    K KM  E D     M   G  PD  T+  LI  +   G + +  
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV 623

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+ + +     T   ++D +     ++K+ + +  +++ R          L   Y
Sbjct: 624 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 683

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREMESAKVRWNV 383
                 S    L D++  +     ++ C  ++   C   +    D  +  M    +  + 
Sbjct: 684 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 743

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T N ++  ++K ++      L++++    + PD++T  ++ +    GF   G ++  + 
Sbjct: 744 ITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN----GFSRQGRMQEAEL 799

Query: 444 IGFLFKTVEINTDP 457
           I  + K +E   +P
Sbjct: 800 I--MLKMIERGVNP 811



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 135/322 (41%), Gaps = 7/322 (2%)

Query: 125 VFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +++++ + +S  ++N +    +I  LC+   +E       +ME   + P +  YN++I+
Sbjct: 342 AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 401

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            Y + G   EA   ++ M    L P   TY+ +I    K   Y      L  M   G SP
Sbjct: 402 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 461

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D  TYN+L+ E      +   E  +  M ++ +     +  A++      G LD+  K++
Sbjct: 462 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF 521

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-- 360
           + + N+       +   L   + +N + S    + D++  +    ++V    +L+  C  
Sbjct: 522 RDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKE 581

Query: 361 -LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            +LS    D +  EM    V  +  T   ++  Y K  +      L   +  R++KPD+V
Sbjct: 582 KMLSE--ADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVV 639

Query: 420 TIGILYDARRIGFDGTGALEMW 441
           T   L D    G +     E+W
Sbjct: 640 TYNTLIDGFCKGSEMEKVNELW 661



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +  ++ +V ++W ++   RI  N  +   +I   C  G + EA R + EM     + ++ 
Sbjct: 650 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 709

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N+I+ GY + G   +A  FL+ M    + P   TY+ LI  + K +  D     +  M
Sbjct: 710 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 769

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  PD ITYN+++  F+  G ++  E     M+ + ++   ST  ++++ ++    L
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 829

Query: 296 DKMEKFYKRLL 306
            +  + +  +L
Sbjct: 830 KEAFRVHDEML 840



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 122 IPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK---PSLEI 176
           + + F +W   +EK           I+   C  G    AV+A + +    LK   P    
Sbjct: 689 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG---NAVKADEFLSNMLLKGIVPDGIT 745

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++I+G+ K    + A   +N+M+   L P   TY+ ++  + +     E ++ +  M 
Sbjct: 746 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 805

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             G +PD  TY  LI        LK     +  ML +
Sbjct: 806 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 842



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 7/154 (4%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + E   AF+ ++   L  S+   NS++ G  K+G  + A     E+    +     T + 
Sbjct: 304 LREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNI 363

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I A  K +  +     L  M+  G  PD +TYN LI  +   GLL+       SM  K 
Sbjct: 364 MINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKG 423

Query: 275 MHLRSSTMVAILDAYMNF-------GMLDKMEKF 301
           +     T  AI++            G+LD+M K 
Sbjct: 424 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 457


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 42/336 (12%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N+ +  +  +N+  II  +C+  L+ EA   F EM    + P +  Y+++I G+  +GK 
Sbjct: 219 NLVQPNVVMYNT--IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           N+A+   N+M   N+ P   T++ L+ A+ K     E      MM   G  P+ +TYN L
Sbjct: 277 NDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           +  +     + + +  + +M    ++    +   +++ +      D+    +K +   R 
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM--HRK 394

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
            +  D+V   + +               D  S+ GR  + + L+L+     +  RG+   
Sbjct: 395 NIIPDVVTYSSLI---------------DGLSKSGR--ISYALQLVDQ---MHDRGVPPT 434

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           +R            T N IL A  K+        LL++L  + ++P++ T  IL      
Sbjct: 435 IR------------TYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIK---- 478

Query: 431 GFDGTGALEMWKRI--GFLFKTVEINTDPLVLAVYG 464
           G   +G LE  +++  G L K   +N D   + + G
Sbjct: 479 GLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQG 514



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+    +EA+  F+EM    + P +  Y+S+I G SK G+ + AL  +++M +  
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  K    D+    L  +K  G  P+  TY++LI+    +G L+   
Sbjct: 431 VPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDAR 490

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  +L   T   ++  +   G+ ++
Sbjct: 491 KVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNE 523



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/385 (19%), Positives = 150/385 (38%), Gaps = 28/385 (7%)

Query: 52  SAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCP--LQILQHDGDWTKDHFWAV 109
           S+  +++ S   T+    S ++     +L  RL ++ + P   +  +  G   K   +  
Sbjct: 44  SSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHT 103

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           + +L      R I             + N  N   +I   C+ GL+  A   F ++    
Sbjct: 104 VLYLSQKMEFRGI-------------KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P    + ++I G    G+  +A LF +++  +       +Y  LI    K     E  
Sbjct: 151 YVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCK---VGETR 207

Query: 230 MCLKMM-KLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             L ++ ++DG    P+ + YN +I       L+      +  M++K +     T  A++
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALI 267

Query: 287 DAYMNFGML-DKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNYMFSRLDDLGDDLASR 343
             +   G L D ++ F K +L +   +K D+     L   + K+        + D +  +
Sbjct: 268 SGFCILGKLNDAIDLFNKMILEN---IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 344 IGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
             +   V    L+   CL+       S+   M    V  ++ + +I++  + K+K F   
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
             L  E+  +++ PD+VT   L D 
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDG 409



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP---SLEIYNSIIHGYSKIGKFNEAL 194
           N +    +I  LC+ G +E+A + F   EG  +K    +++ Y  +I G+   G FNEAL
Sbjct: 469 NMYTYSILIKGLCQSGKLEDARKVF---EGLLVKGHNLNVDTYTIMIQGFCVEGLFNEAL 525

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             L++M++    P + TY+ +I +  K    D  +  L+ M   G  P  I 
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 8/175 (4%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + ++I  L  S R     Q+ D M        I  +NS  I+  LC+   +++A+    +
Sbjct: 403 YSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNS--ILDALCKIHQVDKAIALLTK 460

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++   ++P++  Y+ +I G  + GK  +A      +     +   DTY  +IQ +    +
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGL 520

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           ++E    L  M+ +GC PD  TY ++I       L K+ E      L + M  R 
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIII-----LSLFKKDENDMAEKLLREMIARG 570


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 162/397 (40%), Gaps = 19/397 (4%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ +  D++  + +  +  F +  ++  LC EG + EAV     M    L+P+   Y +I
Sbjct: 162 RVSEALDLFHQMCRPNVVTFTT--LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 219

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + G  KIG    AL  L +M+EM+ + P    Y  +I    K   + +       M+  G
Sbjct: 220 VDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKG 279

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             PD  TYN +I  F  +G     +   + ML ++++    T  A+++AY+      + E
Sbjct: 280 IFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAE 339

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y  +L             + + + K       + +   +A++ G +  V+    L   
Sbjct: 340 ELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATK-GCSPDVFTFNTLIDG 398

Query: 360 CLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
              + R  D   ++ EM    +  + TT N ++  +  + D      L  ++ +  V PD
Sbjct: 399 YCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 458

Query: 418 IVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYGK 465
           IVT   L D          ALEM+K +            F  VE +      L+  +  +
Sbjct: 459 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINE 518

Query: 466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           G FL   EE+Y  +          TY ++I+ + K +
Sbjct: 519 GKFLE-AEELYKEMPHRGIVPNTITYSSMINGLCKQS 554



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGF-----------ALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           LC+ G +++A+  F+ M+              ++P ++ YN +I G    GKF EA    
Sbjct: 469 LCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELY 528

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    + P + TY  +I    K    DE       M     SPD +T+N L+  +  A
Sbjct: 529 KEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKA 588

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           G +      +  M  + +   + T + ++  +   G ++     ++ +++S
Sbjct: 589 GRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISS 639



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 121 QIPQVFDMWKNIEKSRIN-----EFNSQK--------IIGMLCEEGLMEEAVRAFQEMEG 167
           ++    +M+K ++KS+++      FN  +        +I  L  EG   EA   ++EM  
Sbjct: 474 KLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPH 533

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P+   Y+S+I+G  K  + +EA    + M   + SP   T++ L+  Y K    D+
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDD 593

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                  M   G   D ITY  LI  F   G +      ++ M++  ++  + T+ ++L
Sbjct: 594 GLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSML 652


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 2/175 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+  ++ +  ++W  ++++ +         ++   CE+G M+EA++ + EM G    P+ 
Sbjct: 409 SKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNE 468

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y +++ GY K   F++A   LNEM +  +S    TY+ LI          E+D  LK 
Sbjct: 469 VTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKR 528

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              +G  P  +TYN +I  F  AG++      Y+ M  K +     T  + +D Y
Sbjct: 529 FVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGY 583



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 2/200 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  VI+ L  + +      +FD+   ++    + F    +I  L +   + EAV  + +M
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLV--VDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKM 424

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +   +KPS+   +S++ GY + G  +EAL   +EM      P   TY  L++ Y K K +
Sbjct: 425 KEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAF 484

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D+    L  M  +G S    TYN+LI        +  ++   K  +++     + T  +I
Sbjct: 485 DKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSI 544

Query: 286 LDAYMNFGMLDKMEKFYKRL 305
           ++ ++  GM+      Y+++
Sbjct: 545 INGFVKAGMMGSALAMYRQM 564



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 118/290 (40%), Gaps = 15/290 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++  +CE   ++E ++ F   EGF   P+   YNSII+G+ K G    AL    +
Sbjct: 510 INGLCMVDRVCE---VDEMLKRFVS-EGFV--PTTMTYNSIINGFVKAGMMGSALAMYRQ 563

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  ++P   TY   I  Y +    D     L  M+ +G  PD   YN  I  F   G 
Sbjct: 564 MCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGN 623

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +         +L   +    +   + +  Y N  M+ +  KFY  ++  R     ++   
Sbjct: 624 MSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTT 683

Query: 320 LAEVY--IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
           L + +  + N  F+ L+   + LA+     +  +    L+H  L     ID   R   +M
Sbjct: 684 LIDGFSKVGNVAFA-LELYSEMLANHNIPDDKTF--TALTHG-LCRSGDIDGAKRLLDDM 739

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               V  N  T N+++ A+++    +    L  ++ +  V PD  T  I 
Sbjct: 740 TRLDVCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTTYNIF 789



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 18/300 (6%)

Query: 150 CEEGLME-EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G M  +AVR F EM G  +KP   +Y   I G  K+   + A+  L +M+E  L P+
Sbjct: 198 CVVGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPR 257

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY+ ++    K    DE + +  +M+   G   D      L+Q +   G + +    +
Sbjct: 258 DFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLF 317

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
              +   +   + T   ++      GM D+  K  ++++             + +  ++N
Sbjct: 318 DEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRN 377

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVR---EMESAKVR 380
             +     L  DL    G  +      + ++ CL+     H  +   V    +M+ A V+
Sbjct: 378 KQWEDAIALF-DLVVDTGVPD------VFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVK 430

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGAL 438
            ++ T + +LL Y +         L SE+P +   P+ VT   L     ++  FD   AL
Sbjct: 431 PSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYAL 490



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 59/317 (18%), Positives = 126/317 (39%), Gaps = 4/317 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + +V+  L    R  +  ++ D        +++ F +  ++   C  G + +A+  F E 
Sbjct: 261 YNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEA 320

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               + P+   Y  +I G    G  +E      +M E  L P +  ++ +I+   + K +
Sbjct: 321 VRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQW 380

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++  + L  + +D   PD  TY  LI   +    +      +  M    +     T  ++
Sbjct: 381 EDA-IALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSL 439

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRI 344
           L  Y   G +D+  K Y  +     P  E     L + YIK   F +   L +++  + +
Sbjct: 440 LLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGV 499

Query: 345 GRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
              E  + + L++  C++     +D +++   S        T N I+  ++K        
Sbjct: 500 SCGEYTYNI-LINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSAL 558

Query: 404 VLLSELPTRHVKPDIVT 420
            +  ++  + + P+IVT
Sbjct: 559 AMYRQMCEKGITPNIVT 575



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L+++ R+ Q+  +  M +   K R  +F    ++ +L + G M+EA+R   +M   A   
Sbjct: 236 LRDADRAVQV--LGKMREAGLKPR--DFTYNSVVDVLVKVGRMDEALRLKDQML-LATGK 290

Query: 173 SLEIY--NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            ++++   +++ GY   G+  +AL   +E     ++P + TY  LI+      M DE   
Sbjct: 291 KMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYK 350

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
             + M   G  P    +NL+I+     GLL+
Sbjct: 351 LCRQMIEQGLLPSTYEFNLVIK-----GLLR 376


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I      G +EEAV+ F+E+E  + KP +  +NS+I+   K G  +EA +   E
Sbjct: 537 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKE 596

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFAC 256
           M+E  LSP   TY  LI+ +GK    D+++M  ++   M  +GCSP+ +TYN+L+     
Sbjct: 597 MREEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEGCSPNIVTYNILLDCLER 653

Query: 257 AG 258
           +G
Sbjct: 654 SG 655



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I  + + G+  EA+    E++  +  P   +++ LI   GK
Sbjct: 524 YEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGK 583

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               DE  M  K M+ +G SPD +TY+ LI+ F 
Sbjct: 584 NGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFG 617



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            ++ KII +  ++  M      F++M+    +P    Y  +I    KIGK +E+L    E
Sbjct: 298 LDNDKIISVEVDQVYM-----VFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQE 352

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E   +P    Y+ +IQA    +M D+       M  + C P+  T+++++      G 
Sbjct: 353 MTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQ 412

Query: 260 LKRME 264
           L R++
Sbjct: 413 LGRLD 417



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           + Y S++      GK  EAL  L+++ E  +S  +  Y+ ++ A GK K   ++    + 
Sbjct: 467 DAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEK 526

Query: 235 MKLDGCSPDHITYNLLIQEFACAG 258
           MK DG SPD  +YN+LI  F  AG
Sbjct: 527 MKQDGPSPDIFSYNILISSFGRAG 550



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 3/151 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA+    ++    +     +YN+++    K+ K ++      +MK+   SP 
Sbjct: 476 LCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPD 535

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y+ LI ++G+    +E     + ++   C PD I++N LI      G +      +K
Sbjct: 536 IFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFK 595

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            M  + +     T   +++    FG  DK+E
Sbjct: 596 EMREEGLSPDVVTYSTLIEC---FGKTDKVE 623



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 48/112 (42%)

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           + ++  +   +MK  +  P   TY  +I+  GK    DE     + M   G +P+ I YN
Sbjct: 307 EVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYN 366

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            +IQ  A   ++ +    +  M+         T   IL+  +  G L ++++
Sbjct: 367 TMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDE 418


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  GL+ EA R + EM+   +KP+L   N+II GY + G  ++A  FLN M    
Sbjct: 545 LINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI ++ K + +D     +  M+  G  P+ +TYN ++  F+  G ++  E
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMN 291
                M+ K ++   ST  ++++ Y++
Sbjct: 665 MVLHKMIDKGINPDKSTYTSLINGYVS 691



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 11/318 (3%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             I+G+    G +  A+  F++M+G  L P   IY  +I+GY +    + AL   NEM E
Sbjct: 368 SSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVE 427

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                   TY+ L+    + KM D+ D   K M   G  PD  T   LI  +   G + +
Sbjct: 428 RGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTK 487

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
               +++M  + +     T   ++D +   G ++K ++ +  +++            L  
Sbjct: 488 ALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILIN 547

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS---HACLLSHRGIDSVVREMESAKV 379
            +    + S    L D++  +  +  LV C  ++     A  LS    +  +  M S  V
Sbjct: 548 GFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA--NDFLNTMISEGV 605

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             +  T N ++ +++K ++F     L++ +  R + P++VT    Y+A   GF   G ++
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVT----YNAILGGFSRHGRMQ 661

Query: 440 MWKRIGFLFKTVEINTDP 457
             + +  L K ++   +P
Sbjct: 662 EAEMV--LHKMIDKGINP 677



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 133/324 (41%), Gaps = 17/324 (5%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +    ++  LC++G ++       EME   +   L  YN++++ Y + G  +EA   
Sbjct: 222 VNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGL 281

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           ++ M    L P   TY+ LI    K   Y+     L  M   G  P+  T+N ++ E   
Sbjct: 282 VDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCR 341

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
              +   E  +  ML + +     +  +I+  +   G L +   +++++      L  D 
Sbjct: 342 KEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM--KGVGLVPDT 399

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RG-----IDS 369
           V  +  + I  Y   R DD+   L  R    E    + ++++  LL+   RG      D 
Sbjct: 400 V--IYTILINGY--CRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADE 455

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           + +EM    V  +  T   ++  Y K  +      L   +  R +KPD+VT   L D   
Sbjct: 456 LFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMD--- 512

Query: 430 IGFDGTGALEMWKRIGFLFKTVEI 453
            GF   G +E  K + +   + EI
Sbjct: 513 -GFCKVGEMEKAKELWYDMISREI 535


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 125/278 (44%), Gaps = 5/278 (1%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  L + G  + AV  FQ M+    +PS E Y  +I+ + K  +   AL   NEM+    
Sbjct: 225 IDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKC 284

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L+ A+ +  + ++ +   + ++ DG  PD   YN L++ ++ AG       
Sbjct: 285 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAE 344

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAEV 323
            +  M         ++   ++DAY   G+ +  +  ++ +  L     +K  ++  L   
Sbjct: 345 IFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHML--LLSA 402

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWN 382
           Y K    ++ +D+ ++L       +      +L+    L   G ++ V+  MES     +
Sbjct: 403 YSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATD 462

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           ++T NI++  Y +   F+ +  L   L  +++KPD+VT
Sbjct: 463 ISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVT 500



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 117/265 (44%), Gaps = 11/265 (4%)

Query: 137 INEFNSQK----------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
            NE  SQK          ++     EGL E+A   F++++    +P +  YN+++  YS+
Sbjct: 276 FNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSR 335

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G    A    + M+ M   P   +Y+ ++ AYG+  ++++     + MK  G +P   +
Sbjct: 336 AGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKS 395

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           + LL+  ++ AG + + E     +    +   +  + ++L+ Y   G   KME+    + 
Sbjct: 396 HMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAME 455

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHR 365
           +            L  +Y +   F +++ L   LA++  + ++V W  RL +++    + 
Sbjct: 456 SGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYT 515

Query: 366 GIDSVVREMESAKVRWNVTTANIIL 390
               +  EM  A    +  TA ++L
Sbjct: 516 KCLEIFEEMIDAGCHPDGRTAKVLL 540



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           + G L + G MEE + A   ME       +  YN +I+ Y + G F +       +   N
Sbjct: 437 LYGRLGQFGKMEEVLTA---MESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKN 493

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   T+   + AY + K+Y +     + M   GC PD  T  +L+   +    ++++ 
Sbjct: 494 LKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVT 553

Query: 265 GTYKSM 270
              ++M
Sbjct: 554 TVIRTM 559



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/125 (19%), Positives = 56/125 (44%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           E+    L+P   + NS+++ Y ++G+F +    L  M+    +    TY+ LI  YG+  
Sbjct: 418 ELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAG 477

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++++   + +      PD +T+   +  ++   L  +    ++ M+    H    T  
Sbjct: 478 FFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAK 537

Query: 284 AILDA 288
            +L +
Sbjct: 538 VLLSS 542


>gi|15225790|ref|NP_180247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100043|sp|O81028.1|PP171_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g26790, mitochondrial; Flags: Precursor
 gi|3426046|gb|AAC32245.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330252793|gb|AEC07887.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 799

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EEA    QEM+   + P +  Y ++I GY   GK  +AL  ++EM    +SP   TY
Sbjct: 402 GRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY 461

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+    +    +E+    + MK +G  P+ +T +++I+    A  +K  E  + S+  
Sbjct: 462 NVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEVYIKNYMFS 331
           K    ++S     +  Y   G+  K  K + RL     PL++ +  KL   + I+ Y+  
Sbjct: 522 KCPENKAS----FVKGYCEAGLSKKAYKAFVRL---EYPLRKSVYIKLFFSLCIEGYLEK 574

Query: 332 RLDDLGDDLASRI--GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANI 388
             D L    A R+  GR+    C +++   C L++ R    +   M    +  ++ T  I
Sbjct: 575 AHDVLKKMSAYRVEPGRS---MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTI 631

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           ++  Y ++ + +    L  ++  R +KPD+VT  +L D
Sbjct: 632 MIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 52/111 (46%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+   LC EG +E+A    ++M  + ++P   +   +I  + K+    EA +  + M E 
Sbjct: 561 KLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVER 620

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L P   TY  +I  Y +     + +   + MK  G  PD +TY +L+  +
Sbjct: 621 GLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRY 671



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 127 DMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D+ K +   R+    S   K+IG  C+   + EA   F  M    L P L  Y  +IH Y
Sbjct: 577 DVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTY 636

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            ++ +  +A     +MK+  + P   TY  L+  Y K
Sbjct: 637 CRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLK 673


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 114/249 (45%), Gaps = 1/249 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F++++   L+P + +YN+++  YS+ G    A    + M+ M 
Sbjct: 305 LVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMG 364

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ ++ AYG+  ++ + +   + MK  G +P   ++ LL+  ++ A  + + E
Sbjct: 365 CEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCE 424

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K M    +   +  + ++L+ Y   G   KMEK    + N            L  +Y
Sbjct: 425 AIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIY 484

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            K     R+++L  +L  +  R ++V W  R+ +++    +     V  EM  +    + 
Sbjct: 485 GKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDG 544

Query: 384 TTANIILLA 392
            TA ++L A
Sbjct: 545 GTAKVLLSA 553



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 5/279 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I G++  +G  EEA+  FQ M+    KP+ E YN +I+ Y K  K   +     EM+   
Sbjct: 235 IEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQ 294

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L+ A+ +  + ++ +   + ++ DG  PD   YN L++ ++ AG      
Sbjct: 295 CKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAA 354

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAE 322
             +  M         ++   ++DAY   G+    E  ++ +  L     +K  ++  L  
Sbjct: 355 EIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHML--LLS 412

Query: 323 VYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
            Y K    ++ + +  +++   +     V    L  +  L     ++ ++ EME+     
Sbjct: 413 AYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA 472

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +++T NI++  Y K    + +  L  EL  ++ +PD+VT
Sbjct: 473 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 511



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 140/362 (38%), Gaps = 82/362 (22%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKP---SLEIYNSIIHGYSK-IGKFNEALLFLNEM 200
           +I   C  GL+E A     EM+   + P    + +YN+ I G  K  G   EA+     M
Sbjct: 196 LIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRM 255

Query: 201 KEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           K     P ++TY+ +I  YGK       +K+Y E       M+   C P+  TY  L+  
Sbjct: 256 KRDRCKPTTETYNLMINLYGKASKSYMSWKLYCE-------MRSHQCKPNICTYTALVNA 308

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           FA  GL ++ E  ++ +    +        A++++Y   G                    
Sbjct: 309 FAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGY------------------- 349

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
                     Y    +FS +  +G   D AS        + + + ++     H   ++V 
Sbjct: 350 ---------PYGAAEIFSLMQHMGCEPDRAS--------YNIMVDAYGRAGLHSDAEAVF 392

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM+   +   + +  ++L AY K +D      ++ E+    V+PD   +  +       
Sbjct: 393 EEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM------- 445

Query: 432 FDGTGALEMWKRIGFLFK-------------TVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
                 L ++ R+G   K             T +I+T  +++ +YGK  FL   EE++  
Sbjct: 446 ------LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVE 499

Query: 479 LE 480
           L+
Sbjct: 500 LK 501



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           +   EME       +  YN +I+ Y K G          E+KE N  P   T+   I AY
Sbjct: 460 KILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAY 519

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            + K+Y +     + M   GC+PD  T  +L+   AC+
Sbjct: 520 SRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLS--ACS 555



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +++ +  P    ++ LI AYG+   Y E +     +      P   TY LLI+ +  AGL
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205

Query: 260 LKRMEGTYKSMLTKRMHLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++R E     M  +  H+   T+ V + +AY+  G++ K +   +  ++    +K D  +
Sbjct: 206 IERAEVVLVEM--QNHHVSPKTIGVTVYNAYIE-GLM-KRKGNTEEAIDVFQRMKRDRCK 261

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC------------LLSH 364
              E Y  N M         +L  +  ++ + W L   + SH C              + 
Sbjct: 262 PTTETY--NLMI--------NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 311

Query: 365 RGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            G+    + +  +++   +  +V   N ++ +Y +         + S +     +PD  +
Sbjct: 312 EGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 371

Query: 421 IGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
             I+ DA  R G   D     E  KR+G       + +  L+L+ Y K   +  CE +  
Sbjct: 372 YNIMVDAYGRAGLHSDAEAVFEEMKRLGI---APTMKSHMLLLSAYSKARDVTKCEAIVK 428

Query: 478 SLEPYSREKKRWTYQNLIDL 497
            +     E   +   ++++L
Sbjct: 429 EMSENGVEPDTFVLNSMLNL 448


>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
 gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
          Length = 519

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 10/269 (3%)

Query: 155 MEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+  A  +P++  YN ++  +++ G   +  +   ++ E  +SP   TY+
Sbjct: 178 LAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYN 237

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK   C PD IT+N+LI  +    +  +ME  +KS+L  
Sbjct: 238 GVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRS 297

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFS 331
           +      T  +++  Y    + +K E   K++       K + V +  L  +Y      S
Sbjct: 298 KERPTHPTFNSMITNYGKARLREKAEYVVKKM--EELGYKPNYVTQECLIMMYAHCDCVS 355

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANIIL 390
           +   + D+L S   + +L     +L   C+   H   D ++       V  N +T  ++ 
Sbjct: 356 KARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLY 415

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            AY +  D    +VL+ +L  R  K  IV
Sbjct: 416 KAYTRAND----KVLVQKLLKRMNKQGIV 440



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++  +G +  A+  F +M     KP   +YNS+I    H   K     +AL +  +
Sbjct: 128 KLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFEK 187

Query: 200 MKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK +    P   TY+ L++A+ +     ++D+  K +     SPD  TYN ++  +   G
Sbjct: 188 MKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNG 247

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++K ME     M +K+      T   ++D+Y    + DKME+ +K LL S    KE    
Sbjct: 248 MIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRS----KERPTH 303

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVR--- 372
                 I NY  +RL +  + +  ++   EL +    ++  CL+   +H    S  R   
Sbjct: 304 PTFNSMITNYGKARLREKAEYVVKKM--EELGYKPNYVTQECLIMMYAHCDCVSKARQVF 361

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ S++ +  +++ N +L AY           LL     + V P+  T  +LY A
Sbjct: 362 DELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLYKA 417



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           A+ +  + T NI+L A+ +  D K + +L  +L    V PDI T   + DA    +   G
Sbjct: 192 ARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDA----YGKNG 247

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492
            ++  + +    K+ +   D +   +    YG+       E+V+ SL    R K+R T+ 
Sbjct: 248 MIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSL---LRSKERPTHP 304

Query: 493 NLIDLVIKHNGKNL 506
               ++  +    L
Sbjct: 305 TFNSMITNYGKARL 318



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           +R   T + + + L + A     + +D + ++++ + V  ++ T N +L AY K    K 
Sbjct: 192 ARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKE 251

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEMWKRIGFLFKTVEINTDPL- 458
           +  +L  + ++  +PD++T  IL D+  R+  FD     +M +    L ++ E  T P  
Sbjct: 252 MESVLLRMKSKQCRPDVITFNILIDSYGRKQIFD-----KMEQVFKSLLRSKERPTHPTF 306

Query: 459 --VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
             ++  YGK       E V   +E    +    T + LI
Sbjct: 307 NSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLI 345


>gi|302755512|ref|XP_002961180.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
 gi|300172119|gb|EFJ38719.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
          Length = 497

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 15/179 (8%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA-LLFLN 198
           FN+  +I   C EG MEEA+R  QEM     +P+   YN++I GY   G+  +A  L L+
Sbjct: 90  FNT--VINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLH 147

Query: 199 EMKEMNLSPQSD------------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            + +   SP S+            T + L+ A+ +    +E    + M+K  G  PD +T
Sbjct: 148 LLNKTRNSPSSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVT 207

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           YN L + +A AG +  +E     M   R+     T   ++  Y   GM ++  +   RL
Sbjct: 208 YNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRL 266



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +++R  P   D  + + +  +   N+  ++   C EG +EEA R    ++   ++P    
Sbjct: 150 NKTRNSPSSEDGLEPVARPNLRTMNT--LLNAWCREGRLEEAWRVVAMIKSAGMQPDAVT 207

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++   Y+  G+  E    + +MK   L P   TY  LI  Y +  M +     L  +K
Sbjct: 208 YNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLK 267

Query: 237 LDGCSPDHITYNLLIQEF 254
            +G  PD + +N L++ +
Sbjct: 268 FEGLHPDVVAFNTLLKGY 285



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 130/328 (39%), Gaps = 35/328 (10%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEID 229
           +PS+E Y   I       K +EA   L +M+E + L+P S  ++ +I  +      +E  
Sbjct: 48  RPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAM 107

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--------- 280
             ++ M+   C P   TYN LI+ +  AG  ++ +     +L K  +  SS         
Sbjct: 108 RVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVAR 167

Query: 281 ----TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
               TM  +L+A+   G L++  +    + ++           LA+ Y      + L+DL
Sbjct: 168 PNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDL 227

Query: 337 GDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
             D+ +   +  L     L+S  C   +  RG+  + R ++   +  +V   N +L  Y+
Sbjct: 228 IADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSR-LKFEGLHPDVVAFNTLLKGYV 286

Query: 395 KMKDFK--------------HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
           + +  +               L ++L  +    V+PD+ T   + +     +   G  + 
Sbjct: 287 EQQSSQQQQDFQSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMN----WWSSAGVADK 342

Query: 441 WKRIGFLFKTVEINTDPLVLAVYGKGHF 468
            + I    +   +  D    A+  KG+ 
Sbjct: 343 AQTILLEMQQDRVKPDVRAFAILAKGYV 370


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           + +EF    ++     EGL+ EA   F E++    +P    YN+++  + K G + EAL 
Sbjct: 285 KFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALS 344

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EM+E N    S TY+ L+ AY +     E  + ++MM   G  P+ ITY  +I  + 
Sbjct: 345 VLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYG 404

Query: 256 CAG 258
            AG
Sbjct: 405 KAG 407



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 36/186 (19%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------------------- 189
           G  E+A+  F+ M+     P+L  YN I+  + K+G+                       
Sbjct: 231 GKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFT 290

Query: 190 -------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                          EA  F  E+K     P + TY+ L+Q +GK  +Y E    LK M+
Sbjct: 291 CSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 350

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C  D +TYN L+  +A AG  K      + M  K +   + T   ++DAY   G  D
Sbjct: 351 ENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKED 410

Query: 297 KMEKFY 302
           +  K +
Sbjct: 411 EALKLF 416



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           +R+    Q   + ++I +  +N     +NS  ++ M    G   +A    + +E   LKP
Sbjct: 649 TRNNMYDQAEGILQSIHEDGLNPDLVTYNS--LMDMYVRRGECWKAEEILKTLEKSQLKP 706

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            L  YN++I G+ + G   EA+  L+EM E  + P   TY+  +  Y    MY EI+  +
Sbjct: 707 DLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVI 766

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAG 258
           + M  + C P+ +T+ +++  +  AG
Sbjct: 767 ECMAKNDCRPNELTFKMVVDGYCRAG 792



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 110/280 (39%), Gaps = 7/280 (2%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +++      G  +EA    + M    + P+   Y ++I  Y K GK +EAL     MKE 
Sbjct: 363 ELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 422

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P + TY+ ++   GK    +E+   L  MK +GC P+  T+N ++      G+ K +
Sbjct: 423 GCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFV 482

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRK 319
              ++ M +        T   ++ AY   G      K Y  +     N+       L+  
Sbjct: 483 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 542

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           LA    K    S  + + D  +     TE  + L L  +A   ++ GI+ +   +   ++
Sbjct: 543 LAR---KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQI 599

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             +      +LLA  K +         +       KPD+V
Sbjct: 600 FPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMV 639



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 136/320 (42%), Gaps = 14/320 (4%)

Query: 108 AVIRFLKNSSRSRQ-IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AV+  L   SRS + I  + DM  N      N      I+ +   +G+ +   R F+EM+
Sbjct: 433 AVLSMLGKKSRSNEMIKMLCDMKSN--GCFPNRATWNTILALCGNKGMDKFVNRVFREMK 490

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P  + +N++I  Y + G   +A     EM     +    TY+ L+ A  +   + 
Sbjct: 491 SCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 550

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +  +  MK  G  P   +Y+L++Q +A  G    +E   + +   ++      +  +L
Sbjct: 551 SGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLL 610

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRI 344
            A      L   E+ +   L  +   K D+V    +  ++ +N M+ + + +   +    
Sbjct: 611 LANFKCRALAGSERAFT--LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDG 668

Query: 345 GRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              +LV    L+    +   RG     + +++ +E ++++ ++ + N ++  + +    +
Sbjct: 669 LNPDLVTYNSLMD---MYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQ 725

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               +LSE+  R ++P I T
Sbjct: 726 EAVRMLSEMTERGIRPCIFT 745



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +I+H YS+ GK+ +A+     MKEM  SP   TY+ ++  +GK  + + +I   L+ M
Sbjct: 220 YTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEM 279

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   D  T + ++   A  GLL+  +  +  + +      + T  A+L  +   G+ 
Sbjct: 280 RSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVY 339

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            +     K +  +  P       +L   Y +
Sbjct: 340 TEALSVLKEMEENNCPADSVTYNELVAAYAR 370



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+F  W  +    +  F  + + G          + RAF   +    KP + I+NS++  
Sbjct: 598 QIFPSWMLLRTLLLANFKCRALAG----------SERAFTLFKKHGYKPDMVIFNSMLSI 647

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +++   +++A   L  + E  L+P   TY+ L+  Y +     + +  LK ++     PD
Sbjct: 648 FTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPD 707

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            ++YN +I+ F   GL++        M  + +     T    +  Y   GM  ++E
Sbjct: 708 LVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIE 763



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 72/361 (19%), Positives = 142/361 (39%), Gaps = 46/361 (12%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ----EMEGF 168
           L NS   + +P++   + ++ KS +   +   ++  L + G  E AV  F+         
Sbjct: 118 LVNSIVEQPLPRLSSFFDSV-KSELLTTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSG 176

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           ALK    +   ++    +  +++ A   L+++   +       Y  ++ AY +   Y++ 
Sbjct: 177 ALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKA 236

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               + MK  G SP  +TYN+++  F   G   +++ G  + M +K +     T   +L 
Sbjct: 237 INLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLS 296

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           A    G+L + + F+  L +            L +V+ K  ++                T
Sbjct: 297 ACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVY----------------T 340

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           E +                  SV++EME      +  T N ++ AY +    K   V++ 
Sbjct: 341 EAL------------------SVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIE 382

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW---KRIGFLFKTVEINTDPLVLAVYG 464
            +  + V P+ +T   + DA         AL+++   K  G +  T   N    VL++ G
Sbjct: 383 MMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNA---VLSMLG 439

Query: 465 K 465
           K
Sbjct: 440 K 440


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 157 EAVRA-FQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           E VR  F +M+G    +P++  YN ++  +++ GK ++      ++    +SP   T++G
Sbjct: 189 EKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNG 248

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ AYGK  M  E++  L  M+ + C PD IT+N+LI  +      ++ME T+KS++  +
Sbjct: 249 VMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSK 308

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 T  +++  Y    M+DK E  +K++
Sbjct: 309 EKPTLPTFNSMIINYGKARMIDKAEWVFKKM 339



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 145/338 (42%), Gaps = 22/338 (6%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGMLCEEGLMEEAVRAF 162
           DH + +   L  S +  Q  +VF  W   ++  I +     K+I ++ ++G    A+  F
Sbjct: 98  DHCFLLFEELGKSDKWLQCLEVF-RWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLF 156

Query: 163 QEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQ 217
            EM+    +P   +YN++I    H   K     +   + ++MK M    P   TY+ L++
Sbjct: 157 SEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYFDKMKGMERCQPNVVTYNILLR 216

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           A+ +    D+++   K + +   SPD  T+N ++  +   G++K ME     M +     
Sbjct: 217 AFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKP 276

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              T   ++D+Y      +KME+ +K L+ S    KE          I NY  +R+ D  
Sbjct: 277 DIITFNVLIDSYGKKQEFEKMEQTFKSLMRS----KEKPTLPTFNSMIINYGKARMIDKA 332

Query: 338 DDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVREM-----ESAKVRWNVTTANII 389
           + +  ++   ++ +    +++ C++    + G  S  RE+     +S +V    +T N +
Sbjct: 333 EWVFKKMN--DMNYMPSFITYECMIMMYGYCGSVSRAREIFEEVVDSERV-LKASTLNAM 389

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           L  Y +   +     L        V PD  T   LY A
Sbjct: 390 LEVYCRNGLYMEADKLFHNASAFRVHPDASTYKFLYKA 427


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+IG LC+   +E+A   F+EM+   + PS+  Y  +I  + K G   +A  + +EM   
Sbjct: 465 KVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHK 524

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             +P   TY  LI AY K K     D   +MM L+GC P+ +TY  LI     AG +++ 
Sbjct: 525 GCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKA 584

Query: 264 EGTYKSMLTKRMHLRSSTM 282
              Y  M   R  + SS M
Sbjct: 585 CQIYARM---RGDIESSDM 600



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N       LC  G  ++A +   EM G    P    Y+ +I       K  +A   
Sbjct: 423 LNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSL 482

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK   + P   TY  LI ++ K  +  +       M   GC+P+ +TY  LI  +  
Sbjct: 483 FEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLK 542

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           A  +   +  ++ ML +       T  A++D +   G ++K  + Y R+
Sbjct: 543 AKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 119/331 (35%), Gaps = 13/331 (3%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           + FD+    E    +     +++  LCE  L EEA+     M   +  P++  Y  ++ G
Sbjct: 264 EAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSG 323

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             + G+       L+ M      P  + ++ LI AY K + Y       K M   GC P 
Sbjct: 324 CLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPG 383

Query: 244 HITYNLLI------QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           ++ YN+ I      +E   + +L  +E  Y  ML   + L    +          G  D+
Sbjct: 384 YLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQ 443

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
             K    ++       +    K+           +   L +++  R G    V+   +L 
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEM-KRNGIVPSVYTYTILI 502

Query: 358 HACLLSHRGIDSVVR----EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
            +      G+    R    EM       NV T   ++ AYLK K       L   +    
Sbjct: 503 DS--FCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEG 560

Query: 414 VKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            KP++VT   L D          A +++ R+
Sbjct: 561 CKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 2/204 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     +I   C+ G +++A   F +M      P+L  Y+S I    K  + +  L  L
Sbjct: 650 NQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVL 709

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M E + +P    Y  ++    K    DE    +  M+  GC+P+ +TY  +I  F  +
Sbjct: 710 SKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKS 769

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +++    ++ M +K       T   +++   + G+LD+  K    +  +  P      
Sbjct: 770 GKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSH 829

Query: 318 RKLAEVYIKNYMFS--RLDDLGDD 339
           RK+ E + + ++ S   LD+L ++
Sbjct: 830 RKIIEGFSQEFITSIGLLDELSEN 853



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   ++EA      M     +P+  +Y+++I G+ KIGK  +A     +M E  
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY   I    K    D +   L  M  + C+P+ + Y  ++      G   + +
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIG---KTD 738

Query: 265 GTYKSML---TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             YK ML    K  +    T  A++D +   G +++  + ++ +
Sbjct: 739 EAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDM 782



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 135/353 (38%), Gaps = 58/353 (16%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           VI FL ++S+   + + F +++ ++++ I  + +    +I   C+ GL+++A + F EM 
Sbjct: 466 VIGFLCDASK---VEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEML 522

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI---------- 216
                P++  Y ++IH Y K  +   A      M      P   TY  LI          
Sbjct: 523 HKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582

Query: 217 ---QAYGKYKMYDEIDMCLKMMKLD--GC-SPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
              Q Y + +   E     K  KLD   C  P+ ITY  L+     A  +K       +M
Sbjct: 583 KACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTM 642

Query: 271 LTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTP------------LKE--- 314
           L            A++D +   G L D  E F K      +P             K+   
Sbjct: 643 LAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRL 702

Query: 315 DLVRKLAEVYIKNYMFSRL---DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
           DLV K+    ++N     +    ++ D L  +IG+T+  + L L                
Sbjct: 703 DLVLKVLSKMLENSCTPNVVIYTEMVDGLC-KIGKTDEAYKLML---------------- 745

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +ME      NV T   ++  + K    +    L  ++ ++   P+ +T  +L
Sbjct: 746 -KMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 43/363 (11%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLS----- 206
           G  E A+  F++M    L P+L  YN ++  Y K+G+ +N+ L  L+EM+   L      
Sbjct: 223 GKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT 282

Query: 207 ------------------------------PQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                                           + TY+ L+Q +GK  +Y E    LK M+
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C PD +TYN L+  +  AG  +       +M+ K +   + T   +++AY   G  D
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKED 402

Query: 297 KMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           K   F++++  S   P        L  +  K+ +   +D L D  ++      + W   L
Sbjct: 403 KALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML 462

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                   H+ ++ V REM+S     N  T N ++ AY +      +  +  E+      
Sbjct: 463 AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFT 522

Query: 416 PDIVTIGILYD--ARRIGFDGTGALEM-WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           P + T   L +  ARR  ++   ++ +  K  G  FK  E +   L+L  Y KG   R  
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKG--FKPNETSYS-LMLNCYAKGGNGRGI 579

Query: 473 EEV 475
           E++
Sbjct: 580 EKI 582



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 158/387 (40%), Gaps = 27/387 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++ +  + G+  EA+   +EME     P L  YN ++  Y + G   E   F++ 
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDT 375

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P + TY  +I AYGK    D+     + MK  GC P+  TYN ++        
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR 435

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L+ M      M +      S T   +L    N GM   + + ++ + +       D    
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNA 495

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREME 375
           L   Y +      +  + +++  + G T  V     L +A  L+ RG     +SV+ +M+
Sbjct: 496 LIGAYGRCGSQIDVVKMYEEMI-KAGFTPCVTTYNALLNA--LARRGDWEAAESVILDMK 552

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGF 432
           S   + N T+ +++L  Y K  + + +  +  E+   H+ P  + +  L  A   RR   
Sbjct: 553 SKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALM 612

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVLA---VYGKGH-FLRYCEEVYSSLEP------- 481
               A + + + G+    V  N+   + A   +Y + H  LR   E  S L+P       
Sbjct: 613 GMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRE--SGLQPDLVTYNS 670

Query: 482 ----YSREKKRWTYQNLIDLVIKHNGK 504
               Y+R  + W  + ++  + K  GK
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGK 697



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 143/341 (41%), Gaps = 28/341 (8%)

Query: 108 AVIRFLKNSSRSRQ-IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A++  L   SR  + I  + DM  N      N      ++ M   +G+ +   R F+EM+
Sbjct: 425 AILGMLGKKSRLEEMIDMLCDMRSN--GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMK 482

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P+ + +N++I  Y + G   + +    EM +   +P   TY+ L+ A  +   ++
Sbjct: 483 SCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWE 542

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACA----GLLKRMEGTYKSMLTKRMHLRSSTM 282
             +  +  MK  G  P+  +Y+L++  +A      G+ K  E  Y   +     L  + +
Sbjct: 543 AAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
           +A        GM    ++F K         K DLV    +  ++ KN M+ R  ++   +
Sbjct: 603 LANFKRRALMGMERAFQEFCKH------GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRG-----IDSVVREMESAKVRWNVTTANIILLAYLK 395
                + +LV    L+     +  RG      + +++ ++ +  + ++ + N ++  + +
Sbjct: 657 RESGLQPDLVTYNSLMD----MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCR 712

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
               +     LSE+    ++P IVT    Y+    G+ G G
Sbjct: 713 QGLMQEAIRTLSEMTISGIRPCIVT----YNTFVAGYSGKG 749



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 127 DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           ++ K I+KS  + +  +   +I   C +GLM+EA+R   EM    ++P +  YN+ + GY
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLD 238
           S  G F+E    ++ M + +  P   TY  ++  Y K K Y E +D    + ++D
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMD 800



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 114/278 (41%), Gaps = 2/278 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +L  E     A+R   E+        +  + +I+H YS+IGK+  A+    +M++  
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTG 239

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           LSP   TY+ ++  YGK  + +++I   L  M+ +G   D  T + +I      GLL   
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              +  + ++     + T  ++L  +   G+  +     K +  +  P       +L   
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAA 359

Query: 324 YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y++        D  D +  + I    + +   + ++          S  R+M+ +    N
Sbjct: 360 YVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           V T N IL    K    + +  +L ++ +    P+ VT
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVT 457



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           G  C +G  EE ++  Q+  G   KP L  YN++I G+ + G   EA+  L+EM    + 
Sbjct: 678 GGECWKG--EEILKGIQKSGG---KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           P   TY+  +  Y    M+ E++  +  M    C P+ +TY +++  + C G
Sbjct: 733 PCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY-CKG 783



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
            +F  W  +    +  F  + ++GM           RAFQE      KP L ++NS++  
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGM----------ERAFQEFCKHGYKPDLVLFNSMLSI 639

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           ++K   ++ A   L  ++E  L P   TY+ L+  Y +     + +  LK ++  G  PD
Sbjct: 640 FAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPD 699

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            ++YN +I+ F   GL++    T   M    +     T    +  Y   GM  ++E+
Sbjct: 700 LVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEE 756



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 71/162 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G  ++A+  F++M+     P++  YN+I+    K  +  E +  L
Sbjct: 384 NAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDML 443

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M+    +P S T++ ++   G   M+  ++   + MK  G  P+  T+N LI  +   
Sbjct: 444 CDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRC 503

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           G    +   Y+ M+        +T  A+L+A    G  +  E
Sbjct: 504 GSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAE 545



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 53/121 (43%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P L  YNS++  Y++ G+  +    L  +++    P   +Y+ +I+ + +  +  E 
Sbjct: 660 GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEA 719

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M + G  P  +TYN  +  ++  G+   +E     M+         T   ++D 
Sbjct: 720 IRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDG 779

Query: 289 Y 289
           Y
Sbjct: 780 Y 780


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     ++    ++G M EA R  +EM      PS+  YN++I+G+   GK  +A+  L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +MKE  LSP   +Y  ++  + +    DE     + M   G  PD ITY+ LIQ F   
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              K     Y+ ML   +     T  A+++AY   G L+K  + +  ++
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++E     +I   C+EG   +A+    EM    L PS+  Y S+IH   K G  N A+ F
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L++M+   L P   TY  L+  + +    +E    L+ M  +G SP  +TYN LI     
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427

Query: 257 AG 258
            G
Sbjct: 428 TG 429



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 17/311 (5%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R I    +++K + +S++  N F    +I   C  G ++ A+  F +ME     P++  Y
Sbjct: 184 RNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTY 243

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I GY K+ K ++    L  M    L P   +Y+ +I    +     E+   L  M  
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G S D +TYN LI+ +   G   +    +  ML   +     T  +++ +    G +++
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 298 MEKFYKRL------LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
             +F  ++       N RT     LV   ++    N  +  L ++ D+     G +  V 
Sbjct: 364 AMEFLDQMRVRGLCPNERT--YTTLVDGFSQKGYMNEAYRVLREMNDN-----GFSPSVV 416

Query: 352 CLRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
               L +   ++ +  D  +V+ +M+   +  +V + + +L  + +  D      +  E+
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 410 PTRHVKPDIVT 420
             + +KPD +T
Sbjct: 477 VEKGIKPDTIT 487



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R+  +  D+++ + +  +  +EF    +I   C EG +E+A++   EM    + P +  Y
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD---------------GLIQAYGKY 222
           + +I+G +K  +  EA   L ++      P   TY                 LI+ +   
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
            M  E D   + M      PD   YN++I     AG +++    YK M+     L + T+
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTV 678

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
           +A++ A    G ++++      +L S    + +  + L E+   N+    +D + D LA
Sbjct: 679 IALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI---NHREGNMDVVLDVLA 734


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 140/314 (44%), Gaps = 18/314 (5%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
             ++++ +++ ++  N F    +IG LC+E  + +A + F EM    L P+   +N++I 
Sbjct: 85  AMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLID 144

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY K G+ + A+     MK+  + P   T++ L+    K +  +E    L  +K +G  P
Sbjct: 145 GYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVP 204

Query: 243 DHITYNLLIQEFACAGLLKRMEGT------YKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           D  TY+++       GLLK  +G       Y+  + K + + + T   +L+     G ++
Sbjct: 205 DGFTYSIIFD-----GLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVE 259

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K E+  K L+       E +   +   Y +     R     + + SR  R   +    ++
Sbjct: 260 KAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVI 319

Query: 357 SHACLLSHRGIDSV---VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
              C +    ID     V++M    +  +V T NI++  Y ++  F     +L E+    
Sbjct: 320 DKFCEMQM--IDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENG 377

Query: 414 VKPDIVTIGILYDA 427
            KP++++ G L + 
Sbjct: 378 EKPNVISYGSLINC 391



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 155/367 (42%), Gaps = 66/367 (17%)

Query: 76  ALNALIQRLNKKVSCPLQILQHDGDWTK------------------DHFWAVIRFLKNSS 117
           A N++I +      C +Q++    +W K                  D +  +  F    S
Sbjct: 314 AFNSVIDKF-----CEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVF----S 364

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R  QI +  +M +N EK  +  + S  +I  LC++G + EA    ++M G  + P+  IY
Sbjct: 365 RCFQILE--EMEENGEKPNVISYGS--LINCLCKDGKILEAEMVLRDMVGRGVLPNANIY 420

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N +I G   +GK  EAL F +EM +  +     TY+ LI+   K     E +    ++  
Sbjct: 421 NMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS 480

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  PD ITYN LI  ++ AG  ++    Y++M  K++ L+ +                 
Sbjct: 481 TGHCPDVITYNSLISGYSNAGNSQKCLELYETM--KKLGLKPT----------------- 521

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                   +N+  PL     ++   + +K  +F+ +  + +    R+    ++ C +   
Sbjct: 522 --------INTFHPLISGCSKE--GIKLKETLFNEMLQM-NLSPDRVVYNAMIHCYQETG 570

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           H      +   S+ +EM    VR +  T N ++L +LK       + L+ ++  + + P+
Sbjct: 571 HV-----QKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPE 625

Query: 418 IVTIGIL 424
             T  +L
Sbjct: 626 ADTYSLL 632



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 79/161 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+   C+ G M+ A+   ++ME   L+P+   +NS+I  + ++   ++A  ++ +M    
Sbjct: 283 IVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKG 342

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +TY+ LI  YG+  ++      L+ M+ +G  P+ I+Y  LI      G +   E
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              + M+ + +   ++    ++D     G L +  +F+  +
Sbjct: 403 MVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM 443



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGL-MEEAVRAFQ 163
           + ++I    N+  S++  ++++  K +  K  IN F+   +I    +EG+ ++E +  F 
Sbjct: 490 YNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHP--LISGCSKEGIKLKETL--FN 545

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EM    L P   +YN++IH Y + G   +A     EM +M + P + TY+ LI  + K  
Sbjct: 546 EMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEG 605

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
              E    +  MK  G  P+  TY+LLIQ
Sbjct: 606 KLSETKDLVDDMKAKGLIPEADTYSLLIQ 634



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           E G +++A    +EM    ++P  + YNS+I G+ K GK +E    +++MK   L P++D
Sbjct: 568 ETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEAD 627

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  LIQ +   K ++   +  + M  +G  P+    N L       G L+  +     M
Sbjct: 628 TYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEM 687

Query: 271 LTKRM 275
           +   M
Sbjct: 688 IANGM 692



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/403 (18%), Positives = 161/403 (39%), Gaps = 32/403 (7%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQK-IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           Q+ +++D  +  ++ R+  F   + I+  L E    +  +  F+EM G   +P   +Y  
Sbjct: 14  QVSELYDFMR--QEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGR 71

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +    K+G    A+     MK   + P    Y+ LI    K K   + +     M +  
Sbjct: 72  AMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRN 131

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P+ +T+N LI  +  AG +    G  + M  +++     T  ++L             
Sbjct: 132 LVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCK-------- 183

Query: 300 KFYKRLLNSRTPLKEDLVRK-LAEVYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLL 356
              +R+  +R  L E      + + +  + +F  L   D G   A  + R  +   +++ 
Sbjct: 184 --ARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKID 241

Query: 357 SHACLLSHRGI---------DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           ++ C +   G+         + V++ +    +       N I+  Y ++ D     + + 
Sbjct: 242 NYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIE 301

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW--KRIG-FLFKTVEINTDPLVLAVYG 464
           ++ +R ++P+ +    + D +          E W  K +G  +  +VE  T  +++  YG
Sbjct: 302 QMESRGLRPNCIAFNSVID-KFCEMQMIDKAEEWVKKMVGKGIAPSVE--TYNILIDGYG 358

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507
           +      C ++   +E    +    +Y +LI+ + K +GK L+
Sbjct: 359 RLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCK-DGKILE 400


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 6/292 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG++++A      ME  +  P+   YN +I G  K  K ++A+  LN+M E  
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP   TY+ LI    K    +     L +M  +G  PD  TY++ I      G ++   
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + S+  K +        A++D Y   G +D      +R+LN            L E  
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRW 381
            K         L   + +   +  +V    L+    +L     D    V   M S   + 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE--MLKDGAFDHALKVFNHMVSLGYQP 612

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF 432
           +V T    L AY      + +  +++++    + PD+VT  +L D   R+G 
Sbjct: 613 DVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 153/378 (40%), Gaps = 51/378 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G   EA+  F EM+    +P++  Y  +I G  K  K +EA   L+EM E  
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI  Y K  M D+    L +M+ + C P+  TYN LI    C    KR  
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI----CGLCKKRKV 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGM-LDKMEKFYK--RLLNSRTPLKE------- 314
               ++L K +  + S  +   ++ ++    ++ +E  Y+   L+N    + +       
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVF 480

Query: 315 -DLVRKLAEVYIKNYMFSRLDDLGD-----------DLASRIGRTELVWCL--RLLSHAC 360
            D + K   V     +F  +   G            D   ++G+ ++ + L  R+L+ AC
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           L                    N  T N+++    K K  K    L++++ T  VKP +VT
Sbjct: 541 L-------------------PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581

Query: 421 IGILYDA--RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
             IL     +   FD   AL+++  +  L    ++ T    L  Y     L   ++V + 
Sbjct: 582 YTILIGEMLKDGAFD--HALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAK 639

Query: 479 LEPYSREKKRWTYQNLID 496
           +          TY  LID
Sbjct: 640 MNEEGILPDLVTYTVLID 657



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I  LC+E  M+EA     +M    +KP++  Y  +I    K G F+ AL   
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M  +   P   TY   + AY    M +E+D  +  M  +G  PD +TY +LI  +A  
Sbjct: 603 NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662

Query: 258 GLLKRMEGTYKSML 271
           GL  R     K M+
Sbjct: 663 GLTHRAFDFLKCMV 676



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 57/123 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE +   +I  LCE G + EA++ F +M      P++  Y  +I+  S  G+  EAL   
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEMKE    P   TY  LI    K    DE    L  M   G  P  +TYN LI  +   
Sbjct: 323 NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKE 382

Query: 258 GLL 260
           G++
Sbjct: 383 GMI 385



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 15/258 (5%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVR 160
           WT   F   I  L    R  +   +FD  K  +  + NE     +I   C+ G ++ A  
Sbjct: 475 WTYSVF---IDTLCKEGRVEEAGTLFDSVK-AKGVKANEVIYTALIDGYCKVGKIDVAYS 530

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
             + M   A  P+   YN +I G  K  K  EA   + +M  M + P   TY  LI    
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEML 590

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K   +D        M   G  PD  TY   +  +   G+L+ ++     M  + +     
Sbjct: 591 KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV 650

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-----MFSRLDD 335
           T   ++D Y   G+  +   F K +++  T  K  L   +  + IKN      M     +
Sbjct: 651 TYTVLIDGYARLGLTHRAFDFLKCMVD--TGCKPSLY--IVSILIKNLSHENRMKETRSE 706

Query: 336 LGDDLASRIGRTEL--VW 351
           +G D  S +   ++  VW
Sbjct: 707 IGIDSVSNVNSVDIADVW 724



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
           Y ++IHG  + G+ NEAL    +M E N  P   TY  LI A  G  +  + +++    M
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNL-FNEM 325

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           K  GC P+  TY +LI        +         M  K +     T  A++D Y   GM+
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 296 D 296
           D
Sbjct: 386 D 386



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L++E    + E+    + P++  +N++++GY KIG   EA L+ +++ +  L P + TY 
Sbjct: 174 LIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYT 233

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            LI  + + K  D       +M   GC  + ++Y  LI     AG
Sbjct: 234 SLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++I  LC++  + +A+    +M    L PSL  YNS+IHG  K+     A   L+ M E 
Sbjct: 409 ELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN 468

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG----- 258
            L P   TY   I    K    +E       +K  G   + + Y  LI  +   G     
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 259 --LLKRM 263
             LL+RM
Sbjct: 529 YSLLERM 535



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A++ F++M        + IY ++I G+ +  +  EA   ++ MKE  +SP  D Y+ L
Sbjct: 730 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 789

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           +    K  +Y E    +  M  +G  P   +Y LL+      G  ++ +  +  +L+
Sbjct: 790 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS 846



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 101/273 (36%), Gaps = 38/273 (13%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           E  R       F  KP+L  YN+I+   SK    +E      E+    +SP   T++ ++
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMV 201

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y K     E ++    +   G  PD  TY  LI                        H
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILG----------------------H 239

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
            R+     + +AY  F ++   +K  +R   S T    +L+  L E    N       D+
Sbjct: 240 CRNK---GVDNAYEVFLIMP--QKGCQRNEVSYT----NLIHGLCEAGRINEALKLFADM 290

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYL 394
            +D      RT  V     L +A   S R +++  +  EM+      NV T  +++    
Sbjct: 291 TEDNCCPTVRTYTV-----LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           K       R +LSE+  + + P +VT   L D 
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++  +EEA      M+   + PS +IYNS++    K+G + EA+  ++ M E  
Sbjct: 754 LIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 813

Query: 205 LSPQSDTYDGLI 216
           L P  ++Y  L+
Sbjct: 814 LLPLLESYKLLV 825


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 122/253 (48%), Gaps = 10/253 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EE    F EM    LKPS   YN ++  Y++  + +     L EM+++ L P   +Y  
Sbjct: 395 IEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTC 454

Query: 215 LIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           LI AYG+ K   ++  D  L+M K+ G  P   +Y  LI  ++ +G  ++   +++ M  
Sbjct: 455 LISAYGRTKKMSDMAADAFLRMKKV-GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCK 513

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  ++LDA+   G   K+ + +K +L  +          L + + K  ++  
Sbjct: 514 EGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIE 573

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANI 388
             D+  +  S++G    V    +L +A   +  G D+    +++EM +  ++ +  T + 
Sbjct: 574 ARDVVSEF-SKMGLQPSVMTYNMLMNA--YARGGQDAKLPQLLKEMAALNLKPDSITYST 630

Query: 389 ILLAYLKMKDFKH 401
           ++ A+++++DFK 
Sbjct: 631 MIYAFVRVRDFKR 643



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS    ++ ++WK +  EK +        ++    ++GL  EA     E     L+PS+ 
Sbjct: 532 RSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVM 591

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y++ G+  +    L EM  +NL P S TY  +I A+ + + +       KMM
Sbjct: 592 TYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMM 651

Query: 236 KLDGCSPDHITYNLL 250
              G  PD  +Y  L
Sbjct: 652 VKSGQVPDPRSYEKL 666



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A  +F+EM    +KPS+E Y S++  + + G   + +     M    +     TY
Sbjct: 499 GWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITY 558

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  + K  +Y E    +      G  P  +TYN+L+  +A  G   ++    K M  
Sbjct: 559 NTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAA 618

Query: 273 KRMHLRSSTMVAILDAYM 290
             +   S T   ++ A++
Sbjct: 619 LNLKPDSITYSTMIYAFV 636



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 34/288 (11%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDG 214
           ++A   ++ M+   + P       +I    K G+   E      +M E  +    D + G
Sbjct: 290 DDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGG 349

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L++++    + +E  +    M+  G   + I YN L+  +  +  ++ +EG +  M  K 
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKG 409

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   ++T   ++DAY      D +E   + +        EDL     E  +K+Y      
Sbjct: 410 LKPSAATYNILMDAYARRMQPDIVETLLREM--------EDLG---LEPNVKSYTC---- 454

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
                L S  GRT+             +S    D+ +R M+   ++ +  +   ++ AY 
Sbjct: 455 -----LISAYGRTKK------------MSDMAADAFLR-MKKVGLKPSSHSYTALIHAYS 496

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
                +       E+    +KP + T   + DA R   D    +E+WK
Sbjct: 497 VSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWK 544


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 43/363 (11%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLS----- 206
           G  E A+  F++M    L P+L  YN ++  Y K+G+ +N+ L  L+EM+   L      
Sbjct: 223 GKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT 282

Query: 207 ------------------------------PQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                                           + TY+ L+Q +GK  +Y E    LK M+
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C PD +TYN L+  +  AG  +       +M+ K +   + T   +++AY   G  D
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKED 402

Query: 297 KMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           K   F++++  S   P        L  +  K+ +   +D L D  ++      + W   L
Sbjct: 403 KALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML 462

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                   H+ ++ V REM+S     N  T N ++ AY +      +  +  E+      
Sbjct: 463 AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFT 522

Query: 416 PDIVTIGILYD--ARRIGFDGTGALEM-WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           P + T   L +  ARR  ++   ++ +  K  G  FK  E +   L+L  Y KG   R  
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKG--FKPNETSYS-LMLNCYAKGGNGRGI 579

Query: 473 EEV 475
           E++
Sbjct: 580 EKI 582



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 158/387 (40%), Gaps = 27/387 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++ +  + G+  EA+   +EME     P L  YN ++  Y + G   E   F++ 
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDT 375

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P + TY  +I AYGK    D+     + MK  GC P+  TYN ++        
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR 435

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L+ M      M +      S T   +L    N GM   + + ++ + +       D    
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNA 495

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREME 375
           L   Y +      +  + +++  + G T  V     L +A  L+ RG     +SV+ +M+
Sbjct: 496 LIGAYGRCGSQIDVVKMYEEMI-KAGFTPCVTTYNALLNA--LARRGDWEAAESVILDMK 552

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGF 432
           S   + N T+ +++L  Y K  + + +  +  E+   H+ P  + +  L  A   RR   
Sbjct: 553 SKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALM 612

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVLA---VYGKGH-FLRYCEEVYSSLEP------- 481
               A + + + G+    V  N+   + A   +Y + H  LR   E  S L+P       
Sbjct: 613 GMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRE--SGLQPDLVTYNS 670

Query: 482 ----YSREKKRWTYQNLIDLVIKHNGK 504
               Y+R  + W  + ++  + K  GK
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGK 697



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 144/337 (42%), Gaps = 20/337 (5%)

Query: 108 AVIRFLKNSSRSRQ-IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A++  L   SR  + I  + DM  N      N      ++ M   +G+ +   R F+EM+
Sbjct: 425 AILGMLGKKSRLEEMIDMLCDMRSN--GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMK 482

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P+ + +N++I  Y + G   + +    EM +   +P   TY+ L+ A  +   ++
Sbjct: 483 SCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWE 542

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +  +  MK  G  P+  +Y+L++  +A  G  + +E   + +    +      +  ++
Sbjct: 543 AAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRI 344
            A      L  ME+ ++     +   K DLV    +  ++ KN M+ R  ++   +    
Sbjct: 603 LANFKRRALMGMERAFQEF--CKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG 660

Query: 345 GRTELVWCLRLLSHACLLSHRG-----IDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            + +LV    L+     +  RG      + +++ ++ +  + ++ + N ++  + +    
Sbjct: 661 LQPDLVTYNSLMD----MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLM 716

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           +     LSE+    ++P IVT    Y+    G+ G G
Sbjct: 717 QEAIRTLSEMTISGIRPCIVT----YNTFVAGYSGKG 749



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 127 DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           ++ K I+KS  + +  +   +I   C +GLM+EA+R   EM    ++P +  YN+ + GY
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLD 238
           S  G F+E    ++ M + +  P   TY  ++  Y K K Y E +D    + ++D
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMD 800



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 114/278 (41%), Gaps = 2/278 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +L  E     A+R   E+        +  + +I+H YS+IGK+  A+    +M++  
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTG 239

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           LSP   TY+ ++  YGK  + +++I   L  M+ +G   D  T + +I      GLL   
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              +  + ++     + T  ++L  +   G+  +     K +  +  P       +L   
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAA 359

Query: 324 YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y++        D  D +  + I    + +   + ++          S  R+M+ +    N
Sbjct: 360 YVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           V T N IL    K    + +  +L ++ +    P+ VT
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVT 457



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           G  C +G  EE ++  Q+  G   KP L  YN++I G+ + G   EA+  L+EM    + 
Sbjct: 678 GGECWKG--EEILKGIQKSGG---KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           P   TY+  +  Y    M+ E++  +  M    C P+ +TY +++  + C G
Sbjct: 733 PCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY-CKG 783



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
            +F  W  +    +  F  + ++GM           RAFQE      KP L ++NS++  
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGM----------ERAFQEFCKHGYKPDLVLFNSMLSI 639

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           ++K   ++ A   L  ++E  L P   TY+ L+  Y +     + +  LK ++  G  PD
Sbjct: 640 FAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPD 699

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            ++YN +I+ F   GL++    T   M    +     T    +  Y   GM  ++E+
Sbjct: 700 LVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEE 756



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 71/162 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G  ++A+  F++M+     P++  YN+I+    K  +  E +  L
Sbjct: 384 NAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDML 443

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M+    +P S T++ ++   G   M+  ++   + MK  G  P+  T+N LI  +   
Sbjct: 444 CDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRC 503

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           G    +   Y+ M+        +T  A+L+A    G  +  E
Sbjct: 504 GSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAE 545



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 53/121 (43%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P L  YNS++  Y++ G+  +    L  +++    P   +Y+ +I+ + +  +  E 
Sbjct: 660 GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEA 719

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M + G  P  +TYN  +  ++  G+   +E     M+         T   ++D 
Sbjct: 720 IRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDG 779

Query: 289 Y 289
           Y
Sbjct: 780 Y 780


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 8/279 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++EA    +EM G    P+L  YN++I G  K  K  +A   L  +      P 
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  ++    K    D+    ++ M   GC+P  ITY  L++     G +      +K
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M++K     +   V++++ Y       + +K    +    TP   D+   L + Y K  
Sbjct: 496 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--TPYI-DVYNALMDGYCKEG 552

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV---VREMESAKVRWNVTT 385
               + ++ +D+A R G    +    ++    L  H  +D     +  M SA    +V +
Sbjct: 553 RLDEIPNVFEDMACR-GCVPNIKTYNIVMDG-LCKHGKVDEAFPFLESMHSAGCVPDVVS 610

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            NII+    K    K  R +L ++    + PD VT   L
Sbjct: 611 YNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 100 DWTKDH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEE 157
           D T D   + +++     SSR+++  +V D  +      I+ +N+  ++   C+EG ++E
Sbjct: 501 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT--PYIDVYNA--LMDGYCKEGRLDE 556

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
               F++M      P+++ YN ++ G  K GK +EA  FL  M      P   +Y+ +I 
Sbjct: 557 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIID 616

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-------CAGLLKRM 263
              K     E    L  M   G  PD +TYN L+ +F          G+LK M
Sbjct: 617 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 669



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 46/320 (14%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML-----CEEGLMEEAVRAFQEMEG 167
           +K+  +  QI + F M   ++K+++  F  +  +  +     C+ G +++A+  F+ +  
Sbjct: 167 IKSLCQMNQIDKAFTM---LDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP- 222

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P    YN+IIHG+ +    + AL FL EM E  ++P   TY+ LI    K    D+
Sbjct: 223 ---SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDK 279

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  M   G +PD +T+N ++     AG  +R       M  +       T   ++ 
Sbjct: 280 ASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLIS 339

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
                  +D+ +      ++S        V  +    I          L D L  R GR 
Sbjct: 340 GLCKQQNVDRAKDLVDEFVSS------GFVPDVVTYSI----------LADGLCKR-GRI 382

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           +  +                  +V+EM       N+ T N ++    K    +    LL 
Sbjct: 383 DEAF-----------------ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 408 ELPTRHVKPDIVTIGILYDA 427
            L +    PD+VT  I+ D 
Sbjct: 426 SLVSSGFVPDVVTYTIIVDG 445



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           D + A++       R  +IP VF DM        I  +N   ++  LC+ G ++EA    
Sbjct: 539 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI--VMDGLCKHGKVDEAFPFL 596

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M      P +  YN II G  K  K  EA   L++M +  + P + TY+ L+  + K 
Sbjct: 597 ESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKE 656

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + +D+    LK M   G  PD++TYN LI
Sbjct: 657 ERFDDAVGILKNMIKAGVDPDNVTYNTLI 685



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 86/243 (35%), Gaps = 49/243 (20%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEA 158
           G   K+     + FLK  +  +  P VF    NI            +I  LC+    ++A
Sbjct: 235 GHCRKNDCDGALEFLKEMNERKVAPDVFTY--NI------------LIDGLCKASKTDKA 280

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
                EM    + P    +NSI+ G  K GKF  A   L  M E N  P   TY+ LI  
Sbjct: 281 SEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISG 340

Query: 219 YGKYKMYDEI------------------------DMC-----------LKMMKLDGCSPD 243
             K +  D                           +C           +K M   GC+P+
Sbjct: 341 LCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPN 400

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            +TYN LI     A   ++     +S+++        T   I+D     G LDK  K  +
Sbjct: 401 LVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 460

Query: 304 RLL 306
            +L
Sbjct: 461 GML 463



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-N 204
           I  LC+EG ++EA     EM+    + S   Y ++I G  K  + + A     EM  +  
Sbjct: 756 IDRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVAVKG 812

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L   S T++ LI A+ K K  DE    L +M   GCSP  ITYN++I
Sbjct: 813 LCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVI 859



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 39/267 (14%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA +   +M    + P    YN+++  + K  +F++A+  L  M +  + P + TY+ L
Sbjct: 625 KEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTL 684

Query: 216 IQAYGKY-KMYDEIDMCLKMMKLDGCSPDH-ITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           I    +  ++ D  ++  +M++ +GC      TYN +I      G LK+       M   
Sbjct: 685 ISGLSQTNRLGDAYELMHEMLR-NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 743

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +   + T    +D     G LD+       LL+    L++++      V I      +L
Sbjct: 744 GVEANTVTYNIFIDRLCKEGRLDEASS----LLSEMDTLRDEV--SYTTVIIGLCKAEQL 797

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           D      AS++ R E+V    L    C+ SH                    T N+++ A+
Sbjct: 798 DR-----ASKLAR-EMVAVKGL----CITSH--------------------TFNLLIDAF 827

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
            K K       LL  +  R   P ++T
Sbjct: 828 TKTKRLDEALTLLGLMVQRGCSPSVIT 854


>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
 gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
          Length = 562

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF+M K        E    K+I +L   G    A + F EM     +P+ E+Y ++I  
Sbjct: 193 QVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGA 252

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y +    +EAL  LN+MK   L  P   TY  +I+A      +D  D   K M     SP
Sbjct: 253 YCRSCLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISP 312

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME     ML +        TM  IL  + N G ++ ME++
Sbjct: 313 NTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERW 372

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +   +  L   Y K  M+ ++                            
Sbjct: 373 YEKFRGYGVEPETRTLNILIGAYGKRRMYDKM---------------------------- 404

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+ +  D  ++    +++ +  ++PD  T 
Sbjct: 405 ------SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTF 458

Query: 422 GILYDARRIGFDGTG 436
             L D    GF   G
Sbjct: 459 CCLID----GFSRAG 469



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 4/191 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   R +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 356 ILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLA 415

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G  PD  T+  LI  F+ AG   ++ 
Sbjct: 416 FPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHKVV 475

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           G  K  L +R+ +  +T    A+L A      L +ME+ ++R+ +++          L E
Sbjct: 476 GMVK--LAERLDVPVNTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVE 533

Query: 323 VYIKNYMFSRL 333
            Y K  M  ++
Sbjct: 534 AYRKEGMTDKI 544



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 23/251 (9%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQ 124
           T L+ +Y     L+  +Q LN   S PL   Q D  +T   +  +I+   +++R      
Sbjct: 247 TALIGAYCRSCLLDEALQLLNDMKSSPL--CQPD-VYT---YSTIIKACVDAAR------ 294

Query: 125 VFD----MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY 177
            FD    M+K++ +  I  N      ++    + G +++  R   +M +  + KP +   
Sbjct: 295 -FDLTDTMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTM 353

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++   ++ M+ 
Sbjct: 354 NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 413

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                   TYN +I+ FA AG    ME  +  M ++ M   + T   ++D +   G   K
Sbjct: 414 LAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHK 473

Query: 298 ---MEKFYKRL 305
              M K  +RL
Sbjct: 474 VVGMVKLAERL 484


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ +A   + EM    + P +  Y ++IHG+  +GK  EA   LNEMK  N
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN 263

Query: 205 LSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           ++P   T+  LI A    GK KM DE     + MK     PD +TYN LI        L+
Sbjct: 264 INPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 323

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           R     K M    +     +   +LD     G L+  ++F++ LL
Sbjct: 324 RAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 124 QVFDMWKNIEKSRINE--FNSQKIIGMLCEEG---LMEEAVRAFQEMEGFALKPSLEIYN 178
           + F +   ++   IN   +    +I  L +EG   +++EA+  F+EM+   + P +  YN
Sbjct: 251 EAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYN 310

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKM 234
           S+I G  K      A+  L EMKE  + P   +Y    DGL +  G+ ++  E     + 
Sbjct: 311 SLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKG-GRLEIAKEF---FQH 366

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           + + GC  +   YN++I     AGL          M  K     + T   I+ A      
Sbjct: 367 LLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDE 426

Query: 295 LDKMEKFYKRLLNSRTPLKE 314
            DK EK  + ++ +R  LKE
Sbjct: 427 NDKAEKILREMI-ARGLLKE 445



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 131/357 (36%), Gaps = 41/357 (11%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           L +  ++++ P V  ++K  E + I         +I   C +  +  A   F  +     
Sbjct: 65  LSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGF 124

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P     N++I G    G+  + L F +++          +Y  LI    K      +  
Sbjct: 125 HPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVAR 184

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            L+ ++     PD + YN +I       LL      Y  M+ K +   S  +V       
Sbjct: 185 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI---SPDVVTYTTLIH 241

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL-DDLGDDLASRIGRTEL 349
            F ++ KM++ +  LLN           KL  +    Y FS L D LG +     G+ ++
Sbjct: 242 GFCIMGKMKEAFS-LLNE---------MKLKNINPDVYTFSVLIDALGKE-----GKKKM 286

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           V                  S+  EM+   +  ++ T N ++    K    +    LL E+
Sbjct: 287 V--------------DEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEM 332

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI--GFLFKTVEINTDPLVLAVYG 464
               ++PD+ +  IL D    G    G LE+ K      L K   +N  P  + + G
Sbjct: 333 KEHGIQPDVYSYTILLD----GLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMING 385



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 104/263 (39%), Gaps = 3/263 (1%)

Query: 168 FALKPSLEIYNSIIH--GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           F   P + I  + +H   +S+    + A+   N M  M   P +  ++ ++ +  K K Y
Sbjct: 15  FPPYPPIAIPTATLHYQSHSQPHYHHHAVASFNLMLLMRPPPPTFLFNNILSSLVKNKRY 74

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
             +    K  + +G +PD  T ++LI  F     +      + ++L +  H  + T+  +
Sbjct: 75  PTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTL 134

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           +      G + K   F+ +++     L +     L     K      +  L   L     
Sbjct: 135 IKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSV 194

Query: 346 RTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           + ++V    +++  C     G    V  EM    +  +V T   ++  +  M   K    
Sbjct: 195 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFS 254

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           LL+E+  +++ PD+ T  +L DA
Sbjct: 255 LLNEMKLKNINPDVYTFSVLIDA 277


>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 883

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 17/281 (6%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EEA+  F+EM G  + P +  Y ++I G    GK ++A   + EM     +P    Y
Sbjct: 410 GKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGSGKTPDIVIY 469

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L     +  +  E    LK+M+  G  P ++T+N++I+    AG L + E  Y+S+  
Sbjct: 470 NVLAGGLARNGLSQEALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKLDKAEAFYESL-- 527

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-----AEVYIKN 327
              H       +++  Y   G LD+    ++R +    PL + +   L     AE   KN
Sbjct: 528 --EHKSRENDASMVKGYCEAGCLDQA---FERFIRLEFPLPKSVYFTLFTSLCAE---KN 579

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTA 386
           ++ S+  DL D +       E     +L+   C +++ R        + + ++  ++ T 
Sbjct: 580 HI-SKAQDLLDRMWELGVEPEKSMYGKLIGAWCRVNNVRKARQFFEILVTKEIIPDLFTY 638

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            I++  Y ++ + K    L  ++  R VKPD+VT  +L ++
Sbjct: 639 TIMINTYCRLNELKQAYALFQDMKRRDVKPDVVTYTVLLNS 679



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 55/123 (44%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           +EM+ F +KP +  Y  +I    KIG   EA    ++M E  + P +  Y  LI    K 
Sbjct: 750 REMKAFDVKPDVFYYTVLIDWQCKIGDLKEAKGIFDQMIESGVDPDAAPYTALIAGCCKM 809

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               E  M   +M   G  PD ++Y  LI  F   G +++     K ML K +    +++
Sbjct: 810 GNLKEAKMIFDLMIESGLKPDFVSYTTLIAGFRRNGFVRKAFTLMKEMLEKGIKPTQASL 869

Query: 283 VAI 285
            A+
Sbjct: 870 SAV 872



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 119/286 (41%), Gaps = 24/286 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           + G L   GL +EA+   + ME   +KP+   +N +I G    GK ++A  F   ++  +
Sbjct: 472 LAGGLARNGLSQEALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKLDKAEAFYESLEHKS 531

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               +    G  +A    + ++      + ++L+   P  + + L     A    + + +
Sbjct: 532 RENDASMVKGYCEAGCLDQAFE------RFIRLEFPLPKSVYFTLFTSLCAEKNHISKAQ 585

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +    S    ++ A+     + K  +F++ L+       ++++  L    
Sbjct: 586 DLLDRMWELGVEPEKSMYGKLIGAWCRVNNVRKARQFFEILVT------KEIIPDLFTYT 639

Query: 325 IKNYMFSRLDDLGD------DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           I    + RL++L        D+  R  + ++V      ++  LL+      V REME+  
Sbjct: 640 IMINTYCRLNELKQAYALFQDMKRRDVKPDVV------TYTVLLNSNPELDVKREMEAFD 693

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V+ +V    I++  Y ++ D K    L  ++  R + PD+VT  +L
Sbjct: 694 VKPDVVLYTIMINRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVL 739



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           +EME F +KP + +Y  +I+ Y ++    +A     +MK   + P   TY  L+      
Sbjct: 687 REMEAFDVKPDVVLYTIMINRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVLL------ 740

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
           K   E+D+  +M   D   PD   Y +LI      G LK  +G +  M+   +   ++  
Sbjct: 741 KNNPELDLTREMKAFD-VKPDVFYYTVLIDWQCKIGDLKEAKGIFDQMIESGVDPDAAPY 799

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            A++      G L + +  +  ++ S   LK D V
Sbjct: 800 TALIAGCCKMGNLKEAKMIFDLMIES--GLKPDFV 832



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 120/281 (42%), Gaps = 23/281 (8%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIYNSIIHGYSKIGKFNEALLFLN 198
           N   ++   CE G +++A   F  +E F L  S+   ++ S+    + I K  +    L+
Sbjct: 534 NDASMVKGYCEAGCLDQAFERFIRLE-FPLPKSVYFTLFTSLCAEKNHISKAQD---LLD 589

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            M E+ + P+   Y  LI A+ +     +     +++      PD  TY ++I  +    
Sbjct: 590 RMWELGVEPEKSMYGKLIGAWCRVNNVRKARQFFEILVTKEIIPDLFTYTIMINTYCRLN 649

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            LK+    ++ M  + +     T   +L++     +  +ME F          +K D+V 
Sbjct: 650 ELKQAYALFQDMKRRDVKPDVVTYTVLLNSNPELDVKREMEAF---------DVKPDVV- 699

Query: 319 KLAEVYIKNYMFSRLDDLGDDLA--SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
            L  + I  Y   +L+D+    A    + R E+V    ++++  LL +     + REM++
Sbjct: 700 -LYTIMINRY--CQLNDVKKAYALFKDMKRREIVP--DVVTYTVLLKNNPELDLTREMKA 754

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
             V+ +V    +++    K+ D K  + +  ++    V PD
Sbjct: 755 FDVKPDVFYYTVLIDWQCKIGDLKEAKGIFDQMIESGVDPD 795



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 41/97 (42%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G ++EA   F +M    + P    Y ++I G  K+G   EA +  + M E  L P  
Sbjct: 772 CKIGDLKEAKGIFDQMIESGVDPDAAPYTALIAGCCKMGNLKEAKMIFDLMIESGLKPDF 831

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            +Y  LI  + +     +    +K M   G  P   +
Sbjct: 832 VSYTTLIAGFRRNGFVRKAFTLMKEMLEKGIKPTQAS 868


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 6/292 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG++++A      ME  +  P+   YN +I G  K  K ++A+  LN+M E  
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP   TY+ LI    K    +     L +M  +G  PD  TY++ I      G ++   
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + S+  K +        A++D Y   G +D      +R+LN            L E  
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRW 381
            K         L   + +   +  +V    L+    +L     D    V   M S   + 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE--MLKDGAFDHALKVFNHMVSLGYQP 612

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF 432
           +V T    L AY      + +  +++++    + PD+VT  +L D   R+G 
Sbjct: 613 DVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 149/359 (41%), Gaps = 13/359 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G   EA+  F EM+    +P++  Y  +I G  K  K +EA   L+EM E  
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI  Y K  M D+    L +M+ + C P+  TYN LI    C    KR  
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI----CGLCKKRKV 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGM-LDKMEKFYK--RLLNSRTPLKEDLVRKL- 320
               ++L K +  + S  +   ++ ++    ++ +E  Y+   L+N    + +     + 
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVF 480

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKV 379
            +   K         L D + ++  +   V    L+   C +    +  S++  M +   
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGA 437
             N  T N+++    K K  K    L++++ T  VKP +VT  IL     +   FD   A
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFD--HA 598

Query: 438 LEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           L+++  +  L    ++ T    L  Y     L   ++V + +          TY  LID
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLID 657



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I  LC+E  M+EA     +M    +KP++  Y  +I    K G F+ AL   
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M  +   P   TY   + AY    M +E+D  +  M  +G  PD +TY +LI  +A  
Sbjct: 603 NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662

Query: 258 GLLKRMEGTYKSML 271
           GL  R     K M+
Sbjct: 663 GLTHRAFDFLKCMV 676



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 57/123 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE +   +I  LCE G + EA++ F +M      P++  Y  +I+  S  G+  EAL   
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEMKE    P   TY  LI    K    DE    L  M   G  P  +TYN LI  +   
Sbjct: 323 NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKE 382

Query: 258 GLL 260
           G++
Sbjct: 383 GMI 385



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 103/266 (38%), Gaps = 13/266 (4%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVR 160
           WT   F   I  L    R  +   +FD  K  +  + NE     +I   C+ G ++ A  
Sbjct: 475 WTYSVF---IDTLCKEGRVEEAGTLFDSVK-AKGVKANEVIYTALIDGYCKVGKIDVAYS 530

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
             + M   A  P+   YN +I G  K  K  EA   + +M  M + P   TY  LI    
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEML 590

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K   +D        M   G  PD  TY   +  +   G+L+ ++     M  + +     
Sbjct: 591 KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV 650

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTP----LKEDLVRKLAEVYIKNYMFSRLDDL 336
           T   ++D Y   G+  +   F K ++++       +   L++ L+    +N M     ++
Sbjct: 651 TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH---ENRMKETRSEI 707

Query: 337 GDDLASRIGRTELVWCL--RLLSHAC 360
           G D  S     E+   L  +++ H C
Sbjct: 708 GIDSVSNTLEYEIALKLFEKMVEHGC 733



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
           Y ++IHG  + G+ NEAL    +M E N  P   TY  LI A  G  +  + +++    M
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNL-FNEM 325

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           K  GC P+  TY +LI        +         M  K +     T  A++D Y   GM+
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 296 D 296
           D
Sbjct: 386 D 386



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L++E    + E+    + P++  +N++++GY KIG   EA L+ +++ +  L P + TY 
Sbjct: 174 LIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYT 233

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            LI  + + K  D       +M   GC  + ++Y  LI     AG
Sbjct: 234 SLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            ++I  LC++  + +A+    +M    L PSL  YNS+IHG  K+     A   L+ M E
Sbjct: 408 NELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---- 258
             L P   TY   I    K    +E       +K  G   + + Y  LI  +   G    
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527

Query: 259 ---LLKRM 263
              LL+RM
Sbjct: 528 AYSLLERM 535



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 35/143 (24%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++  +EEA      M+   + PS +IYNS++    K+G + EA+  ++ M E  
Sbjct: 743 LIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 802

Query: 205 LSPQSDTY---------DG--------------------------LIQAYGKYKMYDEID 229
           L P  ++Y         +G                          LI    K  + DE  
Sbjct: 803 LLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECS 862

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             + +M+  GC P+ +TY+LLI+
Sbjct: 863 ELIDIMEEKGCQPNPLTYSLLIE 885



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 64/142 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A++ F++M        + IY ++I G+ +  +  EA   ++ MKE  +SP  D Y+ L
Sbjct: 719 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 778

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +    K  +Y E    +  M  +G  P   +Y LL+      G  ++ +  +  +L+   
Sbjct: 779 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY 838

Query: 276 HLRSSTMVAILDAYMNFGMLDK 297
           +        ++D  +   ++D+
Sbjct: 839 NYDEVAWKVLIDGLLKRDLVDE 860



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 101/273 (36%), Gaps = 38/273 (13%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           E  R       F  KP+L  YN+I+   SK    +E      E+    +SP   T++ ++
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMV 201

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y K     E ++    +   G  PD  TY  LI                        H
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILG----------------------H 239

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
            R+     + +AY  F ++   +K  +R   S T    +L+  L E    N       D+
Sbjct: 240 CRNK---GVDNAYEVFLIMP--QKGCQRNEVSYT----NLIHGLCEAGRINEALKLFADM 290

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYL 394
            +D      RT  V     L +A   S R +++  +  EM+      NV T  +++    
Sbjct: 291 TEDNCCPTVRTYTV-----LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           K       R +LSE+  + + P +VT   L D 
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 34/273 (12%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I  LC++G +EEA++ F EM G   KP +  +NS+I+G  K  K  EAL  
Sbjct: 445 LNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSL 504

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQE 253
            ++M    +   + TY+ L+ A   + M D I    K+   M   GC  D+ITYN LI+ 
Sbjct: 505 YHDMFLEGVIANTVTYNTLVHA---FLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKA 561

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G +++  G ++ ML K +     +   ++      G ++   KF + +++    L 
Sbjct: 562 LCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRG--LT 619

Query: 314 EDLVR---------KLAEVYIKNYMFSRLDDLG--------DDLASRIGRTELVWCLRLL 356
            D+V          K+  V   + +F++L   G        + L SR           + 
Sbjct: 620 PDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHE------GMF 673

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
           + ACLL ++G+DS     E   V W++    I+
Sbjct: 674 NDACLLLYKGVDSGFIPNE---VTWSILINYIV 703



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 123/317 (38%), Gaps = 42/317 (13%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q +I  LCE   + EA++  ++M     +P ++ +N +IHG  + G+ +EA   L+ M  
Sbjct: 244 QTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLL 303

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
              S  + TY  L+    +    DE    L  +     +P+ + YN LI  +  +G   R
Sbjct: 304 RGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLYNTLISGYVASG---R 356

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            E   K +L   M +         DAY    M+D + K                      
Sbjct: 357 FEEA-KDLLYNNMVIAGYEP----DAYTFNIMIDGLVK---------------------- 389

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRW 381
              K Y+ S L+ L + +A R     + + + L++  C          +V  M +  +  
Sbjct: 390 ---KGYLVSALELLNEMVAKRFEPNVITYTI-LINGFCKQGRLEEAAEIVNSMSAKGLSL 445

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N    N ++ A  K  + +    L  E+  +  KPDI T   L +          AL ++
Sbjct: 446 NTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLY 505

Query: 442 KRI---GFLFKTVEINT 455
             +   G +  TV  NT
Sbjct: 506 HDMFLEGVIANTVTYNT 522



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L ++G +  A+    EM     +P++  Y  +I+G+ K G+  EA   +N M    
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LS  +  Y+ LI A  K    +E       M   GC PD  T+N LI        ++   
Sbjct: 443 LSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEAL 502

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y  M  + +   + T   ++ A++    + +  K    +L    PL       L +  
Sbjct: 503 SLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKAL 562

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREMESAKVRWN 382
            K     +   L +++  +     ++ C  L+S  C  + +  D++  +++M    +  +
Sbjct: 563 CKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLC-RTGKVNDALKFLQDMIHRGLTPD 621

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + T N ++    KM   +    L ++L +  ++PD +T   L
Sbjct: 622 IVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTL 663



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +N+  S  +  + DM+    +  +  FN   +I  LC  G + EA +    M        
Sbjct: 252 ENNRVSEALQLLEDMFLMCCEPDVQTFND--VIHGLCRAGRIHEAAKLLDRMLLRGFSTD 309

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCL 232
              Y  ++HG  ++G+ +EA   LN++     +P +  Y+ LI  Y     ++E  D+  
Sbjct: 310 ALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLYNTLISGYVASGRFEEAKDLLY 365

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M + G  PD  T+N++I      G L         M+ KR      T   +++ +   
Sbjct: 366 NNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQ 425

Query: 293 GMLDK 297
           G L++
Sbjct: 426 GRLEE 430


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 124/300 (41%), Gaps = 17/300 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++G +CE G   E ++ F E EGF   P+   YNSII+G+ K G    A     +
Sbjct: 498 INGLCVVGRVCEVG---EMLKRF-ETEGFV--PTAMTYNSIINGFIKAGMMGSAFAVYQQ 551

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM---KLDGCSPDHITYNLLIQEFAC 256
           M    + P   TY   I  Y K       D+ LKM+   +  G  PD   YN LI  F  
Sbjct: 552 MCAKGIPPNIVTYTSFIDGYCKTSC---CDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQ 608

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +         ML   +    S   + +  Y N  M+++  +FY++++     L    
Sbjct: 609 EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTAT 668

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVRE 373
              L + + K+   +    L  ++ ++ G          L+H  L  +  ID    ++ E
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAK-GNIPDHITFTALTHG-LCRNGDIDDARKLLDE 726

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M    +R NV   N+++  YL+    +    L  E+  R + PD  T  IL   + +G D
Sbjct: 727 MNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSD 786



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 120 RQIPQVFDMWKNIEKSRINEF--NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R+I +  ++W+ + ++ +  +      ++   C  G M+EAV+ + EM G    P++  Y
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            +++ G+     F++A   L EMK+  +S    TY+ LI          E+   LK  + 
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +G  P  +TYN +I  F  AG++      Y+ M  K +     T  + +D Y
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGY 571



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCE 151
           Q+  H    + + F  VI+ L N    +    +F   K +  S I + F    +I  LC+
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLF---KEMADSGIPDAFTYNILIHWLCQ 398

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
              + EA+  +++M    +KP +  Y+S++  Y   G  +EA+    EM     +P   T
Sbjct: 399 RRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  L++ +     +D+    L  MK +G S +  TYN LI      G +  +    K   
Sbjct: 459 YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFE 518

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           T+     + T  +I++ ++  GM+      Y+++     P
Sbjct: 519 TEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIP 558



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG+ ++AVR F EM    ++P   + +  I    K+   N ALL L +M++    P   
Sbjct: 189 KEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDF 248

Query: 211 TYDGLI 216
           T++ ++
Sbjct: 249 TFNSVV 254



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%)

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           +F    ++ +L + G MEEA+    E+     K S+ +  +++HGY    +  +AL    
Sbjct: 247 DFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFE 306

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           E     L P   TY  LI+   +  M ++     + M+  G  P    +N++I+      
Sbjct: 307 ETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDK 366

Query: 259 LLKRMEGTYKSM 270
           L K     +K M
Sbjct: 367 LWKDAVSLFKEM 378


>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
          Length = 495

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 138/319 (43%), Gaps = 37/319 (11%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I ML +    E+A   FQEM       + E+Y +++  YS+ G+F+ A   L  MK  
Sbjct: 155 KLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSS 214

Query: 204 -NLSPQSDTYDGLIQAYGKYKMYDEI-----DM------------------CLKMMKLDG 239
            N  P   TY  LI+++ +   +D++     DM                   ++M+  D 
Sbjct: 215 HNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEMESTLIQMLGEDD 274

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG------ 293
           C PD  T N  ++ F   G ++ ME  Y+   +  +     T   +LD+Y   G      
Sbjct: 275 CKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMS 334

Query: 294 -MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
            +++ M+K++         +  D   +  ++    Y+F  +       + RI  + +  C
Sbjct: 335 AVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SERIFPSCVTLC 388

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
             + ++        I  V+R +E++ +R ++   N ++ AY +M+ F  ++ +L  +  +
Sbjct: 389 SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKK 448

Query: 413 HVKPDIVTIGILYDARRIG 431
             KPD +T   +  A RI 
Sbjct: 449 GFKPDKITYRTMVKAYRIS 467



 Score = 38.5 bits (88), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 52/130 (40%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+ +    ++  YN +I  + + G   +       M+   + P   T   L++AYG+   
Sbjct: 340 MQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASK 399

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            D+I   L+ ++      D + +N L+  +        M+G  + M  K       T   
Sbjct: 400 ADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRT 459

Query: 285 ILDAYMNFGM 294
           ++ AY   GM
Sbjct: 460 MVKAYRISGM 469


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG  E A   F+ M      PS + YN II  +  +G   +A++  ++M +  
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+ LI  Y K    +     L++MK +G  PD  TY  LI  F+  G L+   
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +  M+   +     T  AI+D Y N   +D     + +++ S
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVES 546



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 8/196 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+  +   F M+  + K     N      +I  LC EG +EEA+   +EM    ++P++ 
Sbjct: 249 RNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCL 232
            Y   +      G  +EA+  L +MK+    P   T+  LI      GK+++   I +  
Sbjct: 309 TYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI--AIGLYH 366

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           KM+  DG  P  +TYN LI +    G  +     +K ML+      + T   I+  +   
Sbjct: 367 KMLA-DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 293 GMLDKMEKFYKRLLNS 308
           G + K    + ++L +
Sbjct: 426 GDIQKAMVIFDKMLKA 441



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +II   C  G +++A+  F +M      P++  YN++I+GY K G  N A+  L  MK  
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN 476

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L P + TY  LI  + +    +        M   G SP+H+TY  +I  +
Sbjct: 477 GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 125 VFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +FD M K      +  +N+  +I   C++G +  A+R  + M+G  LKP    Y  +I G
Sbjct: 434 IFDKMLKAGSSPNVITYNT--LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISG 491

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSP 242
           +S+ GK   A      M E  +SP   TY  +I  Y    K+ D + +  KM++  G  P
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE-SGNLP 550

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-------MNFGML 295
              TYN++I  F+    +   E     M+ + +     T  + +D         + F + 
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 296 DKMEK 300
            +MEK
Sbjct: 611 HEMEK 615



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 40/307 (13%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++PSL  +N++I+   K G+  EA L ++ +   +  P + TY  LI  + +    D  
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST----MVA 284
                 M  DGC P+ +TY+ LI      G L+      + M+ K +     T    +V+
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-----EVYIKNYMFSRLDDLG-- 337
           + DA  +   ++ + K  KR           L+  L+     E+ I  Y     D L   
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 338 ----DDLASRI---GRTELVWCLR--LLSHACLLSHRGIDSVVR---------------- 372
               + L +++   GR E  + +   +LSH  L S +  + +++                
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           +M  A    NV T N ++  Y K  +  +   LL  +    +KPD  T    Y     GF
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT----YTELISGF 492

Query: 433 DGTGALE 439
              G LE
Sbjct: 493 SRGGKLE 499



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF- 196
           N       I  LC  G    A + F EME     P+L  Y+S+I+G  + G+  +A ++ 
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN 645

Query: 197 -LNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQE 253
            L  +      P  DTY  L++   G+ + Y E D  +  M+  G  P    Y  LLI E
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCY-EADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 254 FACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             C  L ++     + SM T    L  S   A++ A      +++ +  ++ +L
Sbjct: 705 --CKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 129 WKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           WK +E   +    +  + I    +   + EA     +M    L P++  Y S I G  + 
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHI 245
           G+   A    +EM++ N  P   TY  LI    +    ++ +M   + +L   GC P+  
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 246 TYNLLIQEFACAG 258
           TY  L++     G
Sbjct: 661 TYTTLVKGLCGEG 673



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC EG   EA +    M+   L+PS EIY +++ G  K  K   AL     M  +     
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  LI A  K    +E     + M     + D + + +L+      GLLK  E    
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLD-----GLLKEGETDLC 783

Query: 269 SMLTKRMHLRSSTM 282
             L   M  R+ T+
Sbjct: 784 LKLLHVMESRNCTL 797


>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
           thaliana]
          Length = 447

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 139/344 (40%), Gaps = 43/344 (12%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           T D + ++I     S    +     +  K++   + + F    +I   C+ G  +     
Sbjct: 128 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYG 220
             EM    +  S   YN+II GY K G F E    L +M E   S P   T + +I +YG
Sbjct: 188 VLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYG 247

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
             +   +++      +L G  PD  T+N+LI  F  AG+ K+M      M  +   L + 
Sbjct: 248 NGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTV 307

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +++ +   G ++KM               +D+ RK+    +K              
Sbjct: 308 TYNIVIETFGKAGRIEKM---------------DDVFRKMKYQGVK-------------- 338

Query: 341 ASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                   + +C  +   S A L+    IDSV+R++ ++ V  +    N I+ AY +  D
Sbjct: 339 -----PNSITYCSLVNAYSKAGLVVK--IDSVLRQIVNSDVVLDTPFFNCIINAYGQAGD 391

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALE 439
              ++ L  ++  R  KPD +T   +   Y A  I FD    LE
Sbjct: 392 LATMKELYIQMEERKCKPDKITFATMIKTYTAHGI-FDAVQELE 434



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME     FQ M    ++P +  +N +I  + K G + +    ++ M++   S  + TY+ 
Sbjct: 255 MESWYSRFQLM---GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNI 311

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I+ +GK    +++D   + MK  G  P+ ITY  L+  ++ AGL+ +++   + ++   
Sbjct: 312 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 371

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           + L +     I++AY   G L  M++ Y ++   +    +     + + Y  + +F  + 
Sbjct: 372 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 431

Query: 335 DLGDDLAS 342
           +L   + S
Sbjct: 432 ELEKQMIS 439



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +V  F E   F+L  +   YN +I  + K G+  +      +MK   + P S TY  L+ 
Sbjct: 292 SVMDFMEKRFFSL--TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVN 349

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY K  +  +ID  L+ +       D   +N +I  +  AG L  M+  Y  M  ++   
Sbjct: 350 AYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKP 409

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              T   ++  Y   G+ D +++  K++++S
Sbjct: 410 DKITFATMIKTYTAHGIFDAVQELEKQMISS 440



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 63/133 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +E+    F++M+   +KP+   Y S+++ YSK G   +    L ++   +
Sbjct: 312 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 371

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I AYG+      +      M+   C PD IT+  +I+ +   G+   ++
Sbjct: 372 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 431

Query: 265 GTYKSMLTKRMHL 277
              K M++   +L
Sbjct: 432 ELEKQMISSGENL 444


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG  E A   F+ M      PS + YN II  +  +G   +A++  ++M +  
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+ LI  Y K    +     L++MK +G  PD  TY  LI  F+  G L+   
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +  M+   +     T  AI+D Y N   +D     + +++ S
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVES 546



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 8/196 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+  +   F M+  + K     N      +I  LC EG +EEA+   +EM    ++P++ 
Sbjct: 249 RNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCL 232
            Y   +      G  +EA+  L +MK+    P   T+  LI      GK+++   I +  
Sbjct: 309 TYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI--AIGLYH 366

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           KM+  DG  P  +TYN LI +    G  +     +K ML+      + T   I+  +   
Sbjct: 367 KMLA-DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 293 GMLDKMEKFYKRLLNS 308
           G + K    + ++L +
Sbjct: 426 GDIQKAMVIFDKMLKA 441



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +II   C  G +++A+  F +M      P++  YN++I+GY K G  N A+  L  MK  
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN 476

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L P + TY  LI  + +    +        M   G SP+H+TY  +I  +
Sbjct: 477 GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 125 VFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +FD M K      +  +N+  +I   C++G +  A+R  + M+G  LKP    Y  +I G
Sbjct: 434 IFDKMLKAGSSPNVITYNT--LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISG 491

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSP 242
           +S+ GK   A      M E  +SP   TY  +I  Y    K+ D + +  KM++  G  P
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE-SGNLP 550

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-------MNFGML 295
              TYN++I  F+    +   E     M+ + +     T  + +D         + F + 
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 296 DKMEK 300
            +MEK
Sbjct: 611 HEMEK 615



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 46/310 (14%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++PSL  +N++I+   K G+  EA L ++ +   +  P + TY  LI  + +    D  
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST----MVA 284
                 M  DGC P+ +TY+ LI      G L+      + M+ K +     T    +V+
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 285 ILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           + DA  +   ++ + K  KR     + + T L   L R   +  I   ++ ++  L D L
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRD-GKFEIAIGLYHKM--LADGL 373

Query: 341 ASRI-------------GRTELVWCLR--LLSHACLLSHRGIDSVVR------------- 372
                            GR E  + +   +LSH  L S +  + +++             
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV 433

Query: 373 ---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
              +M  A    NV T N ++  Y K  +  +   LL  +    +KPD  T    Y    
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT----YTELI 489

Query: 430 IGFDGTGALE 439
            GF   G LE
Sbjct: 490 SGFSRGGKLE 499



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF- 196
           N       I  LC  G    A + F EME     P+L  Y+S+I+G  + G+  +A ++ 
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN 645

Query: 197 -LNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQE 253
            L  +      P  DTY  L++   G+ + Y E D  +  M+  G  P    Y  LLI E
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCY-EADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 254 FACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             C  L ++     + SM T    L  S   A++ A      +++ +  ++ +L
Sbjct: 705 --CKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 129 WKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           WK +E   +    +  + I    +   + EA     +M    L P++  Y S I G  + 
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHI 245
           G+   A    +EM++ N  P   TY  LI    +    ++ +M   + +L   GC P+  
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 246 TYNLLIQEFACAG 258
           TY  L++     G
Sbjct: 661 TYTTLVKGLCGEG 673



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC EG   EA +    M+   L+PS EIY +++ G  K  K   AL     M  + 
Sbjct: 665 LVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLG 724

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                  Y  LI A  K    +E     + M     + D + + +L+      GLLK  E
Sbjct: 725 FQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLD-----GLLKEGE 779

Query: 265 GTYKSMLTKRMHLRSSTM 282
                 L   M  R+ T+
Sbjct: 780 TDLCLKLLHVMESRNCTL 797


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 135/324 (41%), Gaps = 9/324 (2%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-----NEFNSQKIIGMLCEEGLMEEAVRA 161
           WA   ++    +  ++P    M   +EK R      +    Q ++  LC+     EA+  
Sbjct: 264 WACNIYIYYLCKQNRLPDALQM---VEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGL 320

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           ++EM    LKP +    ++I G  K  K +EA    + M  +++      Y+ LI  + +
Sbjct: 321 WEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWR 380

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               D+    +  M+ +GC PD +TYN+L+  +   G++++ E   + M T  ++    +
Sbjct: 381 AGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYS 440

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              +L        LDK   F    +             L + + K        +L  ++ 
Sbjct: 441 YNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMG 500

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGI-DSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            +  + + V    L++    + +  + + +  +M +A++  NV   NI+L    K+  FK
Sbjct: 501 YKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFK 560

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
             + + S +  + V PD VT   L
Sbjct: 561 RAQTIFSHMIQKEVSPDTVTFNTL 584



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G    A   F++M    + P++ +YN ++H   K+G F  A    + M +  
Sbjct: 514 LINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKE 573

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP + T++ LI   GK     E     K M+  G  PD +T+  LI     +GLL   +
Sbjct: 574 VSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLI-----SGLLDEGK 628

Query: 265 GT 266
            T
Sbjct: 629 ST 630



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 5/153 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   ++ A+  F+EM    ++     Y ++I+G   +G +N A     +M    
Sbjct: 479 LIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQ 538

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P  + Y+ ++    K   +         M     SPD +T+N LI         KR  
Sbjct: 539 IDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLG-----KRSR 593

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                 L K M  R      +   Y+  G+LD+
Sbjct: 594 AIEALNLFKDMRTRGVEPDTLTFKYLISGLLDE 626


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 18/262 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G    A+  F EM     +P   +YN++I    H   K     +AL + ++
Sbjct: 139 KLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDK 198

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L++A+ + +  ++ +   K +     SPD  T+N ++  +   G
Sbjct: 199 MKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNG 258

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++K ME     M + +      T   ++D+Y      DKME+ +K LL S    KE    
Sbjct: 259 MIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRS----KEKPTL 314

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVR----- 372
                 I NY  +RL +  +++  ++  T++ +    +++  L+   G  D + R     
Sbjct: 315 PTFNSMITNYGKARLKEKAENVFKKM--TDMGYAPNFITYESLIMMYGFCDCISRAREIF 372

Query: 373 -EMESAKVRWNVTTANIILLAY 393
            EM ++K    V+T N +L  Y
Sbjct: 373 DEMMASKKEMKVSTLNAMLEVY 394



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 87/202 (43%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           FD  K +E+ + N      ++    +   + +A   F+E+    + P +  +N ++  Y 
Sbjct: 196 FDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYG 255

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L+ MK     P   T++ LI +YG+ + +D+++   K +      P   
Sbjct: 256 KNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLP 315

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E  +K M          T  +++  Y     + +  + +  +
Sbjct: 316 TFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEM 375

Query: 306 LNSRTPLKEDLVRKLAEVYIKN 327
           + S+  +K   +  + EVY  N
Sbjct: 376 MASKKEMKVSTLNAMLEVYCMN 397



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 85/185 (45%), Gaps = 2/185 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+  ++++ + Q   ++K + +S ++   F    ++    + G+++E       M+   
Sbjct: 215 LLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQ 274

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            KP +  +N +I  Y +  +F++       +      P   T++ +I  YGK ++ ++ +
Sbjct: 275 CKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAE 334

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              K M   G +P+ ITY  LI  +     + R    +  M+  +  ++ ST+ A+L+ Y
Sbjct: 335 NVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMMASKKEMKVSTLNAMLEVY 394

Query: 290 MNFGM 294
              G+
Sbjct: 395 CMNGL 399



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +++ +E+  + V  ++ T N ++ AY K    K +  +LS + +   KPDI+T  +L D+
Sbjct: 229 NALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDS 288

Query: 428 --RRIGFDGTGALEMWKRIGFLFKTVEINTDPL---VLAVYGKGHFLRYCEEVYSSLEPY 482
             RR  FD     +M +    L ++ E  T P    ++  YGK       E V+  +   
Sbjct: 289 YGRRQEFD-----KMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDM 343

Query: 483 SREKKRWTYQNLI 495
                  TY++LI
Sbjct: 344 GYAPNFITYESLI 356


>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 499

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 139/344 (40%), Gaps = 43/344 (12%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           T D + ++I     S    +     +  K++   + + F    +I   C+ G  +     
Sbjct: 178 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 237

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYG 220
             EM    +  S   YN+II GY K G F E    L +M E   S P   T + +I +YG
Sbjct: 238 VLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYG 297

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
             +   +++      +L G  PD  T+N+LI  F  AG+ K+M      M  +   L + 
Sbjct: 298 NGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTV 357

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +++ +   G ++KM               +D+ RK+    +K              
Sbjct: 358 TYNIVIETFGKAGRIEKM---------------DDVFRKMKYQGVKP------------- 389

Query: 341 ASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                   + +C  +   S A L+    IDSV+R++ ++ V  +    N I+ AY +  D
Sbjct: 390 ------NSITYCSLVNAYSKAGLVVK--IDSVLRQIVNSDVVLDTPFFNCIINAYGQAGD 441

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALE 439
              ++ L  ++  R  KPD +T   +   Y A  I FD    LE
Sbjct: 442 LATMKELYIQMEERKCKPDKITFATMIKTYTAHGI-FDAVQELE 484



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME     FQ M    ++P +  +N +I  + K G + +    ++ M++   S  + TY+ 
Sbjct: 305 MESWYSRFQLM---GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNI 361

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I+ +GK    +++D   + MK  G  P+ ITY  L+  ++ AGL+ +++   + ++   
Sbjct: 362 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 421

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           + L +     I++AY   G L  M++ Y ++   +    +     + + Y  + +F  + 
Sbjct: 422 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 481

Query: 335 DLGDDL-ASRIGRTEL 349
           +L   + +S IG+  L
Sbjct: 482 ELEKQMISSDIGKKRL 497


>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
 gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
          Length = 480

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 21/340 (6%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEA 158
           W +       R L    + RQ      ++K +  E+ R        ++G     GL++EA
Sbjct: 121 WYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGYSGLLDEA 180

Query: 159 VRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           + A ++M+G A  KP    ++ +I+  +K  +F+     L+EM  + +   S  ++ +I 
Sbjct: 181 LAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIID 240

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            YGK  M++E++  L  M   G + PD  T N +I  +   G    ME +Y       + 
Sbjct: 241 GYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVE 300

Query: 277 LRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLV----RKLAEVYIKNYM 329
             + T   ++ +Y   GM DKM    ++ K+   S T +  + V     +   +    Y 
Sbjct: 301 PDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTAVTFNTVIECFGRAGNIEKMEYY 360

Query: 330 FSRLDDLGDDLASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
           F  +   G      +    + +C  +   S A LL    +  ++R+ E+  V  +    N
Sbjct: 361 FRLMKIQG------VKPNPITYCSLVNGYSKAGLLDK--VPGIIRQTENTNVVLDTPFFN 412

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++ AY K  D K +  +L  +  +  KPD +T   +  A
Sbjct: 413 CVISAYAKSGDIKIMEEMLQLMKEKKCKPDKITYATMIQA 452



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 30/311 (9%)

Query: 30  THDRVFFAKTLIRKPISCCCLSSA-------PSLDYHSTKHTTLLVESYHEHQALN---A 79
           T+ R+       R+P     L  A       P+ D +     T LV +Y     L+   A
Sbjct: 128 TYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVY-----TALVGAYGYSGLLDEALA 182

Query: 80  LIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRI 137
            ++++     C     + DG +T   F  +I     S R   IP V D   +  IE    
Sbjct: 183 AVEQMKGAADC-----KPDG-YT---FSVLINCCAKSRRFDLIPAVLDEMSYLGIE---C 230

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N      II    +  + EE   A   M E  +  P +   NS+I  Y   G+ +E    
Sbjct: 231 NSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKS 290

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +E + M + P + T++ +I++YGK  MYD++    + MK    SP  +T+N +I+ F  
Sbjct: 291 YSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTAVTFNTVIECFGR 350

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG +++ME  ++ M  + +     T  ++++ Y   G+LDK+    ++  N+   L    
Sbjct: 351 AGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQTENTNVVLDTPF 410

Query: 317 VRKLAEVYIKN 327
              +   Y K+
Sbjct: 411 FNCVISAYAKS 421



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I      G +E+    F+ M+   +KP+   Y S+++GYSK G  ++    + +
Sbjct: 341 FNT--VIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQ 398

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +  N+   +  ++ +I AY K      ++  L++MK   C PD ITY  +IQ +   G+
Sbjct: 399 TENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKKCKPDKITYATMIQAYTAQGM 458


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 37/323 (11%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F  +I  + N  + +   +++ +M ++  +  +  +N+  +I  LC  G    AV  F++
Sbjct: 166 FTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNT--LINGLCNSGNTNMAVHVFKK 223

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ME    KP++  YN+II    K    N+A+ FL+EM    + P + TY+ ++        
Sbjct: 224 MEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +E     K M+ +GC PD +TYN++I       L+         M+ + +     T   
Sbjct: 284 LNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTT 343

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           IL      G L++  + +K++   +   K D+V             + +D L  D     
Sbjct: 344 ILHGLCYLGQLNEAIRLFKKM--EQKGCKPDVVA----------YNTIIDSLCKD----- 386

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                    RL++ A           + EM    +  N  T + IL  +  +        
Sbjct: 387 ---------RLVNDAM--------EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQ 429

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           L  E+  R+V P+ +T  IL D 
Sbjct: 430 LFKEMVGRNVMPNTLTFSILVDG 452



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 118/297 (39%), Gaps = 11/297 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC  G + EA R F+ ME    KP +  YN II    K    N+A  FL+EM +  
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  ++         +E     K M+  GC PD + YN +I       L+    
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M+ + +   + T   IL  + N G LD+  + +K ++             L +  
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGL 453

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNV 383
            +  M S    + + +  +     +     L++  CL         V E+   K    ++
Sbjct: 454 CQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDL 513

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----------IGILYDARRI 430
            + NI++  Y   +     + LL+++  + + P+ VT          +G L DA+ +
Sbjct: 514 HSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQEL 570



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++  LC+EG++ EA   F+ M    ++P++  YN++++GY    K NEA    
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M     +P   +Y+ LI  Y   +  D+    L  M +   +P+ +TYN +++     
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L   +  +K M +  M     T   +L+     G LD+  K +K +
Sbjct: 562 GRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSM 609



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      I+   C  G ++EA + F+EM G  + P+   ++ ++ G  + G  +EA    
Sbjct: 407 NAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVF 466

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M E  + P   TY+ L+  Y      +E     ++M   GC+PD  +YN+LI  +  +
Sbjct: 467 ETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNS 526

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             + + +     M  K++   + T   I+      G L   ++ +K++ +S
Sbjct: 527 RRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS 577



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 165/404 (40%), Gaps = 36/404 (8%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +FL + ++ +Q   V  +   ++   +    ++   +I  LC    ++ AV  + +M   
Sbjct: 98  KFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKL 157

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  + ++I+G    GK   A+   NEM      P   +Y+ LI         +  
Sbjct: 158 GIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMA 217

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               K M+ +GC P+ +TYN +I       L+         M+ + +   + T  +I+  
Sbjct: 218 VHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHG 277

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL-DDLGDDLASRIGR- 346
               G L++  + +KR+   +   K D+V     + I +    RL +D  D L+  + + 
Sbjct: 278 LCCLGQLNEATRLFKRM--EQNGCKPDVVT--YNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 347 --TELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKH 401
              ++V    +L   C L    ++  +R   +ME    + +V   N I+ +  K +    
Sbjct: 334 IPPDVVTYTTILHGLCYLGQ--LNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV---EINTDPL 458
               LSE+  R + P+ VT    Y     GF   G L+   +   LFK +    +  + L
Sbjct: 392 AMEFLSEMVDRGIPPNAVT----YSTILHGFCNLGQLDEATQ---LFKEMVGRNVMPNTL 444

Query: 459 VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
             ++   G     C+E   S       + RW ++ + +  ++ N
Sbjct: 445 TFSILVDG----LCQEGMVS-------EARWVFETMTEKGVEPN 477



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    M++A     +M    L P+   YN+I+ G   +G+  +A     +M    
Sbjct: 519 LINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSG 578

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L+    K+   DE     K MK     PD I Y +LI+     G L+  +
Sbjct: 579 MLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAK 638

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           G +  +    +     T   ++   +  G+ D+  + +++
Sbjct: 639 GLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 70/168 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++   C    M EA + F+ M G    P L  YN +I+GY    + ++A   L
Sbjct: 477 NIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALL 536

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    L+P + TY+ +++         +     K M   G  P  +TY++L+      
Sbjct: 537 TQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKH 596

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L      +KSM  K++         +++     G L+  +  + +L
Sbjct: 597 GHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKL 644



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           +++K   N      I+  LC  G + +A   F++M    + P+L  Y+ +++G  K G  
Sbjct: 540 SVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHL 599

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           +EAL     MKE  L P    Y  LI+     GK ++   +      +  DG  P   TY
Sbjct: 600 DEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGL---FSKLSADGIQPPGRTY 656

Query: 248 NLLIQEFACAGLLKR 262
           N++I+     GLLK 
Sbjct: 657 NVMIK-----GLLKE 666



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 11/272 (4%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+ +F  M     +PS+  +   +   +K+ +++  +   N+M    ++    + + 
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 215 LIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI    +    D  + +  KM KL G  PD IT+  LI      G +K     Y  M+  
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKL-GIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
                  +   +++   N G  +     +K++   +   K ++V       I +    RL
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKM--EQNGCKPNVVT--YNTIIDSLCKDRL 248

Query: 334 -DDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
            +D  D L+  +GR      + +   +    CL        + + ME    + +V T NI
Sbjct: 249 VNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNI 308

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           I+ +  K +        LSE+  + + PD+VT
Sbjct: 309 IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVT 340


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 176/442 (39%), Gaps = 24/442 (5%)

Query: 74  HQALNALIQRLNK--KVSCPLQILQHDGDWTKDH----FWAVIRFLKNSSRSRQIPQVFD 127
             A+++L++ L K  K+   L +++   D+        + A+I  L    +  +   +FD
Sbjct: 332 EAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFD 391

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
               I   R N+     +I M C  G ++ A+    EM    LK S+  YNS+I+G+ K 
Sbjct: 392 RMGKI-GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKF 450

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDH 244
           G  + A  F+ EM    L P   TY  L+   G Y    +I+  L++   M   G +P  
Sbjct: 451 GDISAAEGFMAEMINKKLEPTVVTYTSLM---GGYCSKGKINKALRLYHEMTGKGIAPSI 507

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            T+  L+     AGL++     +  M    +     T   +++ Y   G + K  +F K 
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLS 363
           +            R L          S      D L    G  EL   C   L H     
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK--GNCELNEICYTGLLHGFCRE 625

Query: 364 HRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            +  +  SV +EM    V  ++    +++   LK KD K    LL E+  R +KPD V  
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIY 685

Query: 422 GILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
             + DA+    D   A  +W  +   G +   V   T   V+    K  F+   E + S 
Sbjct: 686 TSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV---TYTAVINGLCKAGFVNEAEVLCSK 742

Query: 479 LEPYSREKKRWTYQNLIDLVIK 500
           ++P S    + TY   +D++ K
Sbjct: 743 MQPVSSVPNQVTYGCFLDILTK 764



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 3/271 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+    E  +    EM      PS    +S++ G  K GK  EAL  +  + +  +SP 
Sbjct: 307 LCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPN 366

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ LI +  K + + E ++    M   G  P+ +TY++LI  F   G L        
Sbjct: 367 LFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLG 426

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M+   + L      ++++ +  FG +   E F   ++N +          L   Y    
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG 486

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTA 386
             ++   L  ++  + G    ++    L      +    D+V    EM    V+ N  T 
Sbjct: 487 KINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTY 545

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           N+++  Y +  D       L E+  + + PD
Sbjct: 546 NVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 139/347 (40%), Gaps = 16/347 (4%)

Query: 106 FWAVIRFL---KNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVR 160
           +  VIR L   K+ SR+++      M  ++E +   +N      +I  LC++  + EAV 
Sbjct: 230 YTGVIRSLCELKDLSRAKE------MIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVG 283

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
             +++ G  LKP +  Y ++++G  K+ +F   L  ++EM  +  SP       L++   
Sbjct: 284 IKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLR 343

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K    +E    +K +   G SP+   YN LI            E  +  M    +     
Sbjct: 344 KRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDV 403

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   ++D +   G LD    F   ++++   L       L   + K    S  +    ++
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMK 397
            ++     +V    L+   C  S   I+  +R   EM    +  ++ T   +L    +  
Sbjct: 464 INKKLEPTVVTYTSLMGGYC--SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
             +    L +E+   +VKP+ VT  ++ +      D + A E  K +
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 2/159 (1%)

Query: 117 SRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++    + F +W  +  E    NE     +I  LC+ G + EA     +M+  +  P+ 
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y   +   +K     +  + L+      L   + TY+ LI+ + +    +E    +  
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITR 812

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           M  DG SPD ITY  +I E      +K+    + SM  K
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEK 851



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           +L P +   ++++HG  K   F  A+   N+M  + + P    Y G+I++  + K     
Sbjct: 187 SLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRA 246

Query: 229 DMCLKMMKLDGCSPDHITYNLLI 251
              +  M+  GC  + + YN+LI
Sbjct: 247 KEMIAHMEATGCDVNIVPYNVLI 269



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 69/357 (19%), Positives = 146/357 (40%), Gaps = 35/357 (9%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK----EMNLSPQSDTYD 213
           A+  F +M    ++P + IY  +I    ++   + A   +  M+    ++N+ P +   D
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLID 270

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL------IQEFACAGLLKRMEGTY 267
           GL +   K K+++ + +   +   D   PD +TY  L      +QEF     L+ M+   
Sbjct: 271 GLCK---KQKVWEAVGIKKDLAGKD-LKPDVVTYCTLVYGLCKVQEFEIG--LEMMD--- 321

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             ML  R     + + ++++     G +++     KR+++        +   L +   K 
Sbjct: 322 -EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 380

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-ID---SVVREMESAKVRWNV 383
             F   + L D +     R   V    L+   C    RG +D   S + EM    ++ +V
Sbjct: 381 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFC---RRGKLDTALSFLGEMVDTGLKLSV 437

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALE 439
              N ++  + K  D       ++E+  + ++P +VT    Y +   G+   G    AL 
Sbjct: 438 YPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT----YTSLMGGYCSKGKINKALR 493

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           ++  +        I T   +L+   +   +R   ++++ +  ++ +  R TY  +I+
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 121/299 (40%), Gaps = 20/299 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++G   ++   F EM+   + P++  YN +I G+   G+++ A   L EM E  
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ LI A+ K   + E       M   G  P+ ITYN +I  F     L   E
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKL 320
             +  M TK       T   ++D Y     +D     + +  +R L + T     L+   
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--------LLSHRGIDSVVR 372
             V   N       DL   + S     ++V C  LL   C        L   + +     
Sbjct: 439 CLVGDLNAAL----DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 494

Query: 373 EMESA----KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +++++     V  +V T NI++   +    F     L  E+P R + PD +T   + D 
Sbjct: 495 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 161/398 (40%), Gaps = 21/398 (5%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ +  D++  I +  +  F +  ++  LC EG + EAV     M    L+P    Y + 
Sbjct: 166 RVSEALDLFHQICRPDVLTFTT--LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTF 223

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + G  K+G    AL  L +M+E++ + P    Y  +I    K   + +       M+  G
Sbjct: 224 VDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKG 283

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P+ +TYN +I  F  +G     +   + ML +++     T  A+++A++  G   +  
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y  +L             + + + K       +D+   +A++    ++     L+   
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 360 CLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           C    + ID    ++ EM    +  N  T N ++  +  + D      L  ++ +  V P
Sbjct: 404 C--GAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVE---INTDPLVLAVYG 464
           DIVT   L D          ALEM+K +            F  VE   +  + L+  +  
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +G FL   EE+Y  +          TY ++ID + K +
Sbjct: 522 EGKFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 149 LCEEGLMEEAVRAFQEMEGF-----------ALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           LC+ G +++A+  F+ M+              ++P +  YN +I G    GKF EA    
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 532

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    + P + TY  +I    K    DE       M     SP+ +T+N LI  +  A
Sbjct: 533 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 258 G 258
           G
Sbjct: 593 G 593



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 15/222 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C    +++ +    EM    L  +   YN++IHG+  +G  N AL    +
Sbjct: 394 FTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQ 453

Query: 200 MKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMK----------LDGCSPDHITYN 248
           M    + P   T + L+       K+ D ++M   M K           +G  PD +TYN
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYN 513

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +LI      G     E  Y+ M  + +   + T  +++D       LD+  + +  + + 
Sbjct: 514 ILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSK 573

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                      L   Y K     R+DD G +L   +GR  +V
Sbjct: 574 SFSPNVVTFNTLINGYCKA---GRVDD-GLELFCEMGRRGIV 611



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 121 QIPQVFDMWKNIEKSRIN-----EFNSQK--------IIGMLCEEGLMEEAVRAFQEMEG 167
           ++    +M+K ++KS+++      FN  +        +I  L  EG   EA   ++EM  
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P    Y+S+I G  K  + +EA      M   + SP   T++ LI  Y K    D+
Sbjct: 538 RGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDD 597

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  M   G   D I Y  LI  F   G +      ++ M++  ++  + T+  +L 
Sbjct: 598 GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 657

Query: 288 AY 289
            +
Sbjct: 658 GF 659


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 43/285 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L  EGL+++    F EM    +  ++  Y +II+ Y + G+F+ +L  LN MK+  
Sbjct: 140 MITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQER 199

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +SP   TY+ +I A  +  + ++ +      M+ +G  PD ITYN L+   A  GL    
Sbjct: 200 VSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEA 259

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAY----MNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           E  +++M         S +V  ++ Y      FG L+++EK              +L+R+
Sbjct: 260 EMVFRTM-------NESGIVPDINTYSYLVQTFGKLNRLEKV------------SELLRE 300

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +              + G +L        L     L ++A L S +    V R+M++A  
Sbjct: 301 M--------------ECGGNLPDITSYNVL-----LEAYAELGSIKEAMGVFRQMQAAGC 341

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             N  T +++L  Y K   +  +R L  E+   +  PD  T  IL
Sbjct: 342 VANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNIL 386



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 1/216 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P+++ Y  +I    K G + +A   L  M E  
Sbjct: 386 LIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKG 445

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+A+G+  +Y+E  +    M   G +P   TYN LI  FA  GL K  E
Sbjct: 446 VVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAE 505

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     +   +++A+   G  ++  K Y  +  +     E  +  +  +Y
Sbjct: 506 AILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIY 565

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHA 359
               +    ++   ++ AS I  + + +C+ L  +A
Sbjct: 566 CSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYA 601



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 3/228 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRA-FQEMEGFALKPS 173
            R+ Q     ++   +++ R++        +I      GL  E +   F EM    ++P 
Sbjct: 180 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 239

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN+++   +  G  +EA +    M E  + P  +TY  L+Q +GK    +++   L+
Sbjct: 240 VITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLR 299

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G  PD  +YN+L++ +A  G +K   G ++ M        ++T   +L+ Y   G
Sbjct: 300 EMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHG 359

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
             D +   +  +  S T         L +V+ +   F  +  L  D+A
Sbjct: 360 RYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMA 407



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+     +EME     P +  YN ++  Y+++G   EA+    +M+       + TY  
Sbjct: 291 LEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSV 350

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  YGK+  YD++      MK+    PD  TYN+LIQ F   G  K +   +  M  + 
Sbjct: 351 LLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEEN 410

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKF 301
           +     T   ++ A    G+ +  +K 
Sbjct: 411 VEPNMQTYEGLIFACGKGGLYEDAKKI 437



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F EM+     P    YN +I  + + G F E +   ++M E N+ P   TY+GLI A GK
Sbjct: 368 FLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGK 427

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             +Y++    L  M   G  P    Y  +I+ F  A L +     + +M     +    T
Sbjct: 428 GGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVET 487

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
             +++ A+   G+  + E    R+  + + LK D+
Sbjct: 488 YNSLIHAFARGGLYKEAEAILSRM--NESGLKRDV 520



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            E G ++EA+  F++M+      +   Y+ +++ Y K G++++      EMK  N  P +
Sbjct: 321 AELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDA 380

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LIQ +G+   + E+      M  +   P+  TY  LI  FAC        G Y+ 
Sbjct: 381 GTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLI--FACG-----KGGLYED 433

Query: 270 MLTKRMHLRSSTMVAILDAY 289
                +H+    +V    AY
Sbjct: 434 AKKILLHMNEKGVVPSSKAY 453



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE   + ++ + C  GL++E    FQE++   + PS+  Y  ++  Y+K  + N+A   +
Sbjct: 554 NELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLI 613

Query: 198 NEMKEMNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           + M  M +S        +I+  +     +  ++     +  +GC      YN L++   C
Sbjct: 614 DAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWC 673


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 3/291 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I    +EG +++A   F EM G  L P +  YNS+I G  K    ++A+  L
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAIL 258

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M +  + P + TY+ +I+ Y      +E    LK M   G  PD +TY+LLIQ +   
Sbjct: 259 QHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKI 318

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G        + SM+ K     S+    +L  Y   G L  +      ++    P +    
Sbjct: 319 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 378

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREME 375
             L   Y K+    +      ++     R ++V    ++ H    + R  D+V    +M 
Sbjct: 379 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI-HILCKTGRVEDAVYHFNQMV 437

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           S  +  N+ +   ++     + ++K +  L  E+  R + PD + +  + D
Sbjct: 438 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMD 488



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEME---GFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           F+   +I  LC E   +EA+     M    G+   P++  YN++I G+ K G+ ++A   
Sbjct: 163 FSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFL 222

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM    L P   TY+ LI    K +  D+    L+ M   G  PD  TYN++I+ +  
Sbjct: 223 FHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCS 282

Query: 257 AG-------LLKRMEGT 266
            G       LLK+M G+
Sbjct: 283 LGQLEEAVRLLKKMSGS 299



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 129 WKNIEKSRINEFNS---------QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           WK +E+      N            I+  LC+EG + EA   F  +    +KP +  YN+
Sbjct: 461 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNT 520

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLD 238
           +I GY  +GK +E++  L+ M  + L P S TY+ L+  Y K  ++ D + +  +M + D
Sbjct: 521 LIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580

Query: 239 G--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
              C+   IT N+++     AG +      Y  M+ +   LR  T   +L        +D
Sbjct: 581 VKFCA---ITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVD 637

Query: 297 KMEKFYKRL 305
           +  + ++ L
Sbjct: 638 EALRMFEDL 646



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 137/325 (42%), Gaps = 54/325 (16%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +++A+ AF EM    L+P +  Y+++IH   K G+  +A+   N+M    
Sbjct: 381 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEG 440

Query: 205 LSPQSDTYDGLIQ---AYGKYKMYDEI---------------------DMC--------- 231
           LSP   ++  LI    + G++K  +E+                     ++C         
Sbjct: 441 LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQ 500

Query: 232 --LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
               M+   G  PD ++YN LI  +   G +         M++  +   S T  ++L+ Y
Sbjct: 501 DFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGY 560

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
              G ++     Y+ +       ++D+  K   +   N M   L   G  +A+R    ++
Sbjct: 561 FKNGRVEDALALYREM------FRKDV--KFCAI-TSNIMLHGLFQAGRIVAARELYMKM 611

Query: 350 V---WCLRLLSHACLLS----HRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDF 399
           V     LR+ ++  +L     +  +D  +R   ++ S +   +V T +I++ A LK+   
Sbjct: 612 VDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRI 671

Query: 400 KHLRVLLSELPTRHVKPDIVTIGIL 424
              + L S +  R   PD++T  ++
Sbjct: 672 DEAKSLFSAMVLRGPVPDVITYSLM 696



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 15/295 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+      ++I  LC+    ++A+   F+ M      P +  YN++I G     K  EAL
Sbjct: 123 RVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEAL 182

Query: 195 LFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             L  M      N SP   +Y+ +I  + K    D+       M   G  PD +TYN LI
Sbjct: 183 ELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLI 242

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                A  + +     + M  K +   + T   ++  Y + G L++  +  K++  S + 
Sbjct: 243 DGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKM--SGSG 300

Query: 312 LKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           L+ D+V    L + Y K    +    + D +  R G+        +L H        ID 
Sbjct: 301 LQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV-RKGQKPNSTIYHILLHGYATKGALID- 358

Query: 370 VVREMESAKVRWNVT----TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            VR++    +R  +       NI++ AY K           +E+    ++PD+V+
Sbjct: 359 -VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVS 412



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           RI  +N+  ++G LCE   ++EA+R F+++     +  +  ++ +I+   K+G+ +EA  
Sbjct: 619 RIETYNT--VLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKS 676

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + M      P   TY  +I+++ +  + +E D     M+ +GC+ D    N++++   
Sbjct: 677 LFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLL 736

Query: 256 CAGLLKRMEGTYKSML-TKRMHLRSSTMVAIL 286
             G ++R  GTY + +  K   L +ST   ++
Sbjct: 737 EKGDVRR-AGTYLTKIDEKNFSLEASTAALLI 767



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N +I  Y+K G  ++A+    EM++  L P   +Y  +I    K    ++       M 
Sbjct: 378 FNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMV 437

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            +G SP+ I++  LI      G  K++E     M+ + +H  +  M  I+D     G + 
Sbjct: 438 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 497

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF-SRLDDLGD--DLASRIGRTELVWCL 353
           + + F+  +++    +K D+V       I  Y F  ++D+     D    IG     W  
Sbjct: 498 EAQDFFDMVIH--IGVKPDVVSY--NTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553

Query: 354 RLLSHACLLSHRGIDSVV--REMESAKVRWNVTTANIIL 390
             L +    + R  D++   REM    V++   T+NI+L
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIML 592


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 56/400 (14%)

Query: 57  DYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNS 116
           D+  +  + + VE   E      +++RL  + S    I Q    +      A+++ L  S
Sbjct: 114 DHEGSAFSEMTVEDLLE------VVRRLPPEASAVKAIGQGLYYFDSGALAALLKELNKS 167

Query: 117 SRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQ---EMEGFALK 171
              R+  ++FD  + ++ S       N+     M+ + G  ++  RA +   EM    ++
Sbjct: 168 GHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQ 227

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
            ++  Y+++++   K  + + AL    +M     +P   TY+ LI  YGK   ++E    
Sbjct: 228 CNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRV 287

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L  ++  G  P+  TYN +I     +G  +     Y+ ML       ++T  A++ AY  
Sbjct: 288 LDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGK 347

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTEL 349
            G LD+  + +           +D+VR+  E  +  Y  + S  +        + GR EL
Sbjct: 348 NGQLDRALQIF-----------QDMVRRGCERNVITYSSLISACE--------KAGRWEL 388

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
              L L                REM +   R NV T N ++ A  +   ++  + +  ++
Sbjct: 389 A--LELF---------------REMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM 431

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFK 449
             R  KPD VT G L  A    +D  G    W+R    F+
Sbjct: 432 QHRGCKPDAVTFGGLIAA----YDRAG---HWRRALTAFE 464



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 99/277 (35%), Gaps = 58/277 (20%)

Query: 125 VFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
             D+++ +  E    N      +I +  + G  EEA+R    +E   + P +  YN++I 
Sbjct: 249 ALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVII 308

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE--------------- 227
             +  G+  EAL     M      P + TY  LI AYGK    D                
Sbjct: 309 ACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCER 368

Query: 228 --------IDMCLKM------------MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
                   I  C K             M  +GC P+ +TYN LI   A     ++ +  +
Sbjct: 369 NVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMF 428

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           + M  +     + T   ++ AY   G        ++R L +   +K    R  + VY   
Sbjct: 429 EQMQHRGCKPDAVTFGGLIAAYDRAG-------HWRRALTAFEQMKAHNCRPDSVVY--- 478

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
                     + +   + +T LVW  ++ +  C   H
Sbjct: 479 ----------NTIVGALWKTGLVWA-QIFTPPCRQEH 504


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            K+IG LC    +E+A + FQEM+   + P + +Y ++I  + K G   +A  + +EM+ 
Sbjct: 226 SKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMER 285

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
              +P   TY  LI AY K +   + +   +MM   GC+P+ +TY  LI     AG +++
Sbjct: 286 DGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEK 345

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
               YK M  +         V I D  M+F ++D
Sbjct: 346 ASQIYKIMKKEN--------VEIPDVDMHFRVVD 371



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N       LC  G  E+A    +EM      P    Y+ +I       K  +A   
Sbjct: 185 LNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQL 244

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK   ++P    Y  LI ++ K    ++       M+ DGC+P+ +TY  LI  +  
Sbjct: 245 FQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLK 304

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
           +  + +    Y+ ML+K       T  A++D     G ++K  + YK
Sbjct: 305 SRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLM 155
           DG   + + +     +    ++ Q+ +  D+ K+  +E    N      +I   C+ G +
Sbjct: 371 DGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKL 430

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA   F  M      P++  Y+S+I    K  + + AL  L++M E + +P    Y  +
Sbjct: 431 DEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEM 490

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I    K    DE    + MM+  GC+P+ +TY  +I  F  +G +++     + M +K  
Sbjct: 491 IDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGC 550

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
                T   +++   + G+LD+  K  + +  +  P      RK+ E + + ++ S
Sbjct: 551 APNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIAS 606



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 103/379 (27%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +  VI +L N+S+   + + F +++ ++++ I  + +    +I   C+ G +E+A   F 
Sbjct: 225 YSKVIGYLCNASK---VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFD 281

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS----PQSDTY----DGL 215
           EME     P++  Y ++IH Y K  K ++A    NE+ EM LS    P   TY    DGL
Sbjct: 282 EMERDGCAPNVVTYTALIHAYLKSRKVSKA----NEVYEMMLSKGCTPNIVTYTALIDGL 337

Query: 216 IQA-----------------------------------------YGK--------YKMYD 226
            +A                                         YG         Y++ +
Sbjct: 338 CKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKE 397

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             D+ LK M ++GC P+H+ Y+ LI     AG L   +  + +ML         T  +++
Sbjct: 398 ARDL-LKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLI 456

Query: 287 DAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           D       LD   K   ++L NS  P           V I   M   L         ++G
Sbjct: 457 DRLFKDKRLDLALKVLSKMLENSCAP----------NVVIYTEMIDGL--------CKVG 498

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           +T+  + L ++                 ME      NV T   ++  + K    +    L
Sbjct: 499 KTDEAYKLMVM-----------------MEEKGCNPNVVTYTAMIDGFGKSGRVEKCLEL 541

Query: 406 LSELPTRHVKPDIVTIGIL 424
           L ++ ++   P+ VT  +L
Sbjct: 542 LQQMSSKGCAPNFVTYRVL 560



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 108/314 (34%), Gaps = 24/314 (7%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+I  LCE  L EEA+     M   +  P++  Y  ++ G     K       L+ M   
Sbjct: 47  KMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITE 106

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI-----QEFACAG 258
              P    ++ L+ AY +   Y      LK M   GC P ++ YN+LI      E     
Sbjct: 107 GCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKD 166

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKE 314
           +L   E  Y  ML   + L    +          G  +K     + +++      T    
Sbjct: 167 VLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYS 226

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-- 372
            ++  L         F    ++      R G    V+    L  +      G     R  
Sbjct: 227 KVIGYLCNASKVEKAFQLFQEM-----KRNGIAPDVYVYTTLIDS--FCKAGFIEQARNW 279

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
             EME      NV T   ++ AYLK +       +   + ++   P+IVT   L D    
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALID---- 335

Query: 431 GFDGTGALEMWKRI 444
           G    G +E   +I
Sbjct: 336 GLCKAGKIEKASQI 349


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 3/302 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G   EA+    +M  +  +P+   Y  +++   K G+   A+  L +M+E N
Sbjct: 297 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 356

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  Y  +I    K+   D        M++ G + + ITYN+LI  F  AG      
Sbjct: 357 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ ++++    T   ++D+++  G L + E+ +K +++            L + +
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            K     + + + D + S+ G    +    +L +    ++R  D   + R+M    V  +
Sbjct: 477 CKENHLDKANQMVDLMVSK-GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 535

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
             T N ++  + ++      + L  E+ +R V P+IVT  IL D      +   ALE+++
Sbjct: 536 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 595

Query: 443 RI 444
           +I
Sbjct: 596 KI 597



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 132/315 (41%), Gaps = 13/315 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S Q     ++ + +E+  I  +      II  LC+ G ++ A   F EME   +  ++ 
Sbjct: 338 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 397

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+   G++++    L +M +  ++P   T+  LI ++ K     E +   K M
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +PD ITY  LI  F     L +       M++K       T   +++ Y     +
Sbjct: 458 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 517

Query: 296 DKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
           D   + ++++    + + T     L++   E+   N       +L  ++ SR     +V 
Sbjct: 518 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA----KELFQEMVSRKVPPNIVT 573

Query: 352 CLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
              LL   C    S + ++ +  ++E +K+  ++   NII+              L   L
Sbjct: 574 YKILLDGLCDNGESEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 632

Query: 410 PTRHVKPDIVTIGIL 424
           P + VKP + T  I+
Sbjct: 633 PLKGVKPGVKTYNIM 647



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/394 (18%), Positives = 157/394 (39%), Gaps = 26/394 (6%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            +   F+++  +E   I  N      +IG  C  G  ++  +  ++M    + P++  ++
Sbjct: 376 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 435

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I  + K GK  EA     EM    ++P + TY  LI  + K    D+ +  + +M   
Sbjct: 436 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 495

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC P+  T+N+LI  +  A  +      ++ M  + +   + T   ++  +   G L+  
Sbjct: 496 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 555

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD-----DLASRIGRTEL---V 350
           ++ ++ +++ + P           +     +   L D G+     ++  +I ++++   +
Sbjct: 556 KELFQEMVSRKVP---------PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 606

Query: 351 WCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
               ++ H    + +  D+  +   +    V+  V T NI++    K        +L  +
Sbjct: 607 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 666

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTGA---LEMWKRIGFLFKTVEINTDPLVLAVYGK 465
           +      PD  T  IL  A     D T +   +E  KR GF      I     +L+    
Sbjct: 667 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDKA 726

Query: 466 GHFLRY--CEEVYSSLEPYSREKKRWTYQNLIDL 497
            +F +Y  C +  S      +    W ++ L+ L
Sbjct: 727 NYFSKYHNCSKSTSFWNQPEKPSDSWNWKCLLRL 760



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 40/321 (12%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     ++++Q   V  + K +E   I  N +    +I   C    +  A  A  ++   
Sbjct: 191 RLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKL 250

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P+   ++++I+G    G+ +EAL  ++ M EM   P   T + L+          E 
Sbjct: 251 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 310

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   GC P+ +TY  ++     +G         + M  + + L +     I+D 
Sbjct: 311 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 370

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGR 346
               G LD     +  +         ++      +   N +     + G  DD A     
Sbjct: 371 LCKHGSLDNAFNLFNEM---------EMKGITTNIITYNILIGGFCNAGRWDDGA----- 416

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                                  ++R+M   K+  NV T ++++ +++K    +    L 
Sbjct: 417 ----------------------KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454

Query: 407 SELPTRHVKPDIVTIGILYDA 427
            E+  R + PD +T   L D 
Sbjct: 455 KEMIHRGIAPDTITYTSLIDG 475


>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++  +G +  A+  F +M     KP   +YNS+I    H   K     +AL + ++
Sbjct: 127 KLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALVKALGYFDK 186

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L++A  +     ++D+  K +     SPD  TYN +I  +   G
Sbjct: 187 MKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYGKNG 246

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++  ME     M +K+      T   ++D+Y      DKME+ +K LL S    KE    
Sbjct: 247 MITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS----KERPTH 302

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVV 371
                 I NY  +RL +  + +  ++   EL +    ++  CL++             + 
Sbjct: 303 PTFNSMITNYGKARLREKAESVIEKM--QELGFKPNYVTQECLINMYAYCDCVSKAQQIF 360

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ S++    +++ N +L AY   +       LL     + V P   T  +LY A
Sbjct: 361 DELVSSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRA 416



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 91/213 (42%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           FD  K +E+ + N      ++         ++    F++++   + P +  YN +I GY 
Sbjct: 184 FDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYG 243

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YG+ + +D+++   K +      P H 
Sbjct: 244 KNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 303

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E   + M          T   +++ Y     + K ++ +  L
Sbjct: 304 TFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDEL 363

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           ++S++ +    +  + + Y  N +    D L D
Sbjct: 364 VSSQSTVPLSSLNAMLDAYCMNRLPMEADRLLD 396



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N+ T NI+L A  +  D K + +L  +L    V PDI T   + D    G+   G +   
Sbjct: 196 NIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVID----GYGKNGMITEM 251

Query: 442 KRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
           + +    K+ +   D +   +    YG+       E+V+ SL    R K+R T+     +
Sbjct: 252 ESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSL---LRSKERPTHPTFNSM 308

Query: 498 VIKHNGKNL 506
           +  +    L
Sbjct: 309 ITNYGKARL 317


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 5/286 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C EGL+EEA      M    LKPSL  YN+II+G  K G++  A   L EM  + 
Sbjct: 159 LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 218

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP + TY+ L+    +   + E       M   G  PD ++++ LI  F+    L +  
Sbjct: 219 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQAL 278

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
             ++ M  K+  L    ++   ++  Y   G + +  K    +L     L       +  
Sbjct: 279 VYFRDM--KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 336

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRW 381
              K  M +  D L D++  R    +      L+   C   +     S+   M    ++ 
Sbjct: 337 GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 396

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++   N ++  + K+ + +    L   + +R + P+ +T GIL +A
Sbjct: 397 DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 442



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 93/188 (49%), Gaps = 2/188 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  ++W  +   +I  N      +I   C  G + EA R +  M    +KP+L   N
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 472

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GY + G  ++A  FL  M    ++P   +Y+ LI  + +    D+  + +  M+ +
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  PD ITYN+++  F   G ++  E   + M+ K ++   ST  A+++ ++    L++ 
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592

Query: 299 EKFYKRLL 306
            +F+  +L
Sbjct: 593 FRFHDEML 600



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +    ++  LC++G  ++      EMEG  +   +  YN++I  Y + G   EA   
Sbjct: 116 LNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEI 175

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +N M +  L P   TY+ +I    K   Y      L  M   G SPD  TYN L+ E
Sbjct: 176 MNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/273 (18%), Positives = 103/273 (37%), Gaps = 34/273 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+E ++ +A + F EM      P    + ++IHG+ + G   +AL     M + N
Sbjct: 334 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 393

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y+ LI  + K    ++       M      P+HITY +LI  +   G +    
Sbjct: 394 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 453

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M+ K +     T   ++  Y   G   K ++F  R++             L   +
Sbjct: 454 RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGF 513

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           +      R D++             +W                   + +ME   +  ++ 
Sbjct: 514 V------REDNM---------DKAFLW-------------------INKMEKEGLLPDII 539

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           T N+++  + +    +   ++L ++  + + PD
Sbjct: 540 TYNVVMNGFCRQGRMQEAELVLRKMIEKGINPD 572



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN  NS  ++G L +   +E A    +E+    ++ ++   N +++   K GKF++   F
Sbjct: 83  INACNS--LLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSF 140

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM+   +     TY+ LI AY +  + +E    +  M   G  P   TYN +I     
Sbjct: 141 LSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCK 200

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
            G   R +G    ML   +   ++T   +L
Sbjct: 201 KGRYARAKGILIEMLNIGLSPDTTTYNTLL 230


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C  G +++A+  F++ME   + P++  YN+IIHG  K G+ +EA  F  +M++  
Sbjct: 203 MVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER 262

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI    K + +DE +  LK M   G +P+++ YN LI  +   G +    
Sbjct: 263 VKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTAL 322

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                M++  +   S T  +++  Y     ++  E   + +L
Sbjct: 323 QIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 42/312 (13%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG +EE  +  +EM    ++P +  YN ++HG   +GK  EA    +E K+    P +
Sbjct: 488 CKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA 547

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  +I  Y K    +E +   + M       + + Y  LI+ +   G ++        
Sbjct: 548 YTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD 607

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M ++ +   S+T  +++    N G++D   +                             
Sbjct: 608 MRSRGIPQTSATYSSLIHGLSNIGLVDSANQL---------------------------- 639

Query: 330 FSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              LD++  +     G +  V C   L+   C L     +DS+++EM    V  N  T  
Sbjct: 640 ---LDEMRKE-----GLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYT 691

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
           I++  + K+ + K    LL+E+  + + PD VT    Y+A   GF   G +E   ++  L
Sbjct: 692 IMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVT----YNALTNGFCKEGKMEEALKVCDL 747

Query: 448 FKTVEINTDPLV 459
             T  I+ D + 
Sbjct: 748 MSTGGISLDDIT 759



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE G M EA R   +M    +  +   Y+S+IHG S IG  + A   L+EM++  
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG 647

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP    Y  LI  Y K     ++D  L+ M ++   P+ ITY ++I      G +K   
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAA 707

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
                M  K +   + T  A+ + +   G   KME+  K
Sbjct: 708 KLLNEMAQKGIVPDAVTYNALTNGFCKEG---KMEEALK 743



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 133/310 (42%), Gaps = 9/310 (2%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++    ++++ +EK  +  N      II  LC+ G ++EA +  ++ME   +KPSL  Y 
Sbjct: 212 RVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYG 271

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---M 235
            +I+G  K+ +F+EA   L EM +   +P +  Y+ LI  Y +      I   L++   M
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCR---IGNISTALQIRDDM 328

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G SP+ +T N LIQ +  +  ++  E   + MLT    +   T  +++         
Sbjct: 329 ISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRF 388

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           D    F   +L       + L+  L     +N   S   +L   L  +      V    L
Sbjct: 389 DSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNAL 448

Query: 356 LSHAC-LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +   C   S      +++EM    +  +  + N ++LA  K    +    L  E+  R +
Sbjct: 449 IHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGI 508

Query: 415 KPDIVTIGIL 424
           +PD+ T  +L
Sbjct: 509 QPDMYTYNML 518



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L++  RSR IPQ    + ++             I  L   GL++ A +   EM    L P
Sbjct: 604 LRDDMRSRGIPQTSATYSSL-------------IHGLSNIGLVDSANQLLDEMRKEGLSP 650

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++  Y ++I GY K+G+ ++    L EM   N+ P   TY  +I  + K          L
Sbjct: 651 NVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLL 710

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             M   G  PD +TYN L   F   G ++        M T  + L   T   ++D +
Sbjct: 711 NEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 132 IEKSRINEFNSQKI-----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +++  IN  +  KI     I   C+ G M+ A +   EM    + P    YN++ +G+ K
Sbjct: 675 LQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCK 734

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            GK  EAL   + M    +S    TY  LI  + K
Sbjct: 735 EGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/93 (20%), Positives = 47/93 (50%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           + F  M    + P + +++++++ +   G+ ++A+    +M+++ ++P   TY+ +I   
Sbjct: 183 QVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGL 242

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            K    DE     + M+ +   P  +TY +LI 
Sbjct: 243 CKNGRLDEAFQFKEKMEKERVKPSLVTYGVLIN 275


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+ AVR F +++   L P+L  YN++I GYSK+     AL  + EM+E  
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI A+ +    ++      +M+  G  PD  TY++LI      G +K   
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 265 GTYKSMLTKRMHLRSSTMV 283
             +KS+    MHL+ ++++
Sbjct: 459 KLFKSL--GEMHLQPNSVI 475



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F M++N+++S I  N +    +I   C  G++++A + F EM    +   +  YN +I G
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             +  KF EA+  ++++ ++ LSP   TY+ LI  +      D        +K  G SP 
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPT 367

Query: 244 HITYNLLIQEFA 255
            +TYN LI  ++
Sbjct: 368 LVTYNTLIAGYS 379



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 117/298 (39%), Gaps = 40/298 (13%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
            K  ++ ++   +I   CE G   +  R    +E F L P++ IY ++I G  K G    
Sbjct: 152 SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVML 211

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     +M  + L P   TY  L+  + K  +  E     + MK  G  P+   YN LI 
Sbjct: 212 AKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
           E+   G++ +    +  M  K +         ++   +  G L + +KF + +   +   
Sbjct: 272 EYCNGGMVDKAFKVFAEMREKGI------ACGVMTYNILIGGLCRGKKFGEAV---KLVH 322

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           K + V     +   N + +   D+G                             +D+ VR
Sbjct: 323 KVNKVGLSPNIVTYNILINGFCDVGK----------------------------MDTAVR 354

Query: 373 ---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +++S+ +   + T N ++  Y K+++      L+ E+  R + P  VT  IL DA
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +M   +EKS +  + +    +I  LC  G M+EA + F+ +    L+P+  IYN++IHGY
Sbjct: 424 EMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGY 483

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G    AL  LNEM    + P   ++   I    + + + E ++ L  M   G  P  
Sbjct: 484 CKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSV 543

Query: 245 ITYNLL 250
             Y ++
Sbjct: 544 SLYKMV 549



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 11/276 (3%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F +M+   L P+   Y+ +++G+ K G   E       MK   + P +
Sbjct: 204 CKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-----LLKRME 264
             Y+ LI  Y    M D+       M+  G +   +TYN+LI    C G      +K + 
Sbjct: 264 YAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGL-CRGKKFGEAVKLVH 322

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K  L+  +     T   +++ + + G +D   + + +L +S           L   Y
Sbjct: 323 KVNKVGLSPNI----VTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 325 IKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            K    +   DL  ++  R I  +++ + + + + A L        +   ME + +  +V
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDV 438

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            T ++++       + K    L   L   H++P+ V
Sbjct: 439 YTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+   +    D+ K +E+  I  ++     +I         E+A      ME   L P +
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDV 438

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             Y+ +IHG    G   EA      + EM+L P S  Y+ +I  Y K
Sbjct: 439 YTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCK 485


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 87/378 (23%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +M++   +S +  FN   +I +LC+EG +++A      ME   +KP++  YN+IIHG+  
Sbjct: 206 EMFRMNIRSSLYTFNI--MINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCL 263

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            GKF  A +    MK+  L P   TY+  I    K    +E    +  M   G  P+ +T
Sbjct: 264 RGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVT 323

Query: 247 YNLLIQEFACAGLLKR----------------------------MEG-------TYKSML 271
           YN LI  +   G L +                            MEG         K M 
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMR 383

Query: 272 TKRMHLRSSTMVAILDAYMN-------FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            K M   + T   +++ Y         FG+LD+M             ++  LV   + +Y
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEM---------VGKGIQPTLVTYTSLIY 434

Query: 325 I---KNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSHACLLSHRGID---SVVREM 374
           +   +N M        D L S+I +  L+  +     L+   C  ++  ID    +++EM
Sbjct: 435 VLGKRNRMKE-----ADALFSKIQQEGLLPDIIVFNALIDGHC--ANGNIDRAFQLLKEM 487

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI----------GIL 424
           ++ KV  +  T N ++  Y +    +  R LL E+  R +KPD ++           G +
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 425 YDARRI-------GFDGT 435
            DA R+       GFD T
Sbjct: 548 KDAFRVRDEMMTTGFDPT 565



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 38/261 (14%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           + EM    ++ SL  +N +I+   K GK  +A  F+  M+ + + P   TY+ +I  +  
Sbjct: 204 YAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCL 263

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
              +    +  + MK  G  PD  TYN  I      G L+   G    ML   +   + T
Sbjct: 264 RGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVT 323

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
             A++D Y N G LDK   +           +++++ K     +  Y             
Sbjct: 324 YNALIDGYCNKGDLDKAYAY-----------RDEMISKGIMASLVTY------------- 359

Query: 342 SRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                        L  HA  +  R    D++++EM    +  +  T NI++  Y +  D 
Sbjct: 360 ------------NLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDA 407

Query: 400 KHLRVLLSELPTRHVKPDIVT 420
           K    LL E+  + ++P +VT
Sbjct: 408 KRAFGLLDEMVGKGIQPTLVT 428



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 122 IPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           I + F + K ++  ++  +E     ++   C EG +EEA +   EM+   +KP    YN+
Sbjct: 477 IDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNT 536

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I GYSK G   +A    +EM      P   TY+ LIQ   K +  +  +  LK M   G
Sbjct: 537 LISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKG 596

Query: 240 CSPDHITYNLLIQ 252
            +PD  TY  +I+
Sbjct: 597 ITPDDSTYLSIIE 609



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 111/287 (38%), Gaps = 7/287 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C +G +++A     EM    +  SL  YN  IH     G+  +A   +
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMI 379

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM+E  + P + T++ LI  Y +          L  M   G  P  +TY  LI      
Sbjct: 380 KEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             +K  +  +  +  + +        A++D +   G +D+  +  K + N +    E   
Sbjct: 440 NRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITY 499

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVRE 373
             L + Y +         L D++  R  + + +    L+S     S RG       V  E
Sbjct: 500 NTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISG---YSKRGDMKDAFRVRDE 556

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           M +      + T N ++    K ++ +H   LL E+ ++ + PD  T
Sbjct: 557 MMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC  G    A++ F  MEG     + + YN II G    G   +A++  
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +M   P   TY+ LI  Y      +     L +MK +GC PD  TYN L+  F+  
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+     ++ M+   ++    +  A++D +   G +D      KR+         +  
Sbjct: 492 GKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMES 376
             +     K   FS  + + D +  +     ++    L+   C          +  +ME 
Sbjct: 552 NAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            K   N+ T + ++    +        +LL E+  + + PD VT   L D 
Sbjct: 612 RKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 662



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAF 162
           + + AVI  L   +R  +  ++ D  K +E+  + N      +I  LC  G  + A + F
Sbjct: 549 ESYNAVINGLSKENRFSEAEKICD--KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 606

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +ME     P+L  Y+S+I+G  + GK +EA + L EM+   L+P   T+  LI  +   
Sbjct: 607 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVL 666

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
              D   + L+ M   GC P++ TY++L++
Sbjct: 667 GRIDHAFLLLRRMVDMGCKPNYRTYSVLLK 696



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           W     S  N     +II  LC  G +E+A+  F++M      P++  YN++I+GY   G
Sbjct: 398 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 457

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
             N A   L+ MKE    P   TY+ L+  + K+   +      + M   G +P+ ++Y 
Sbjct: 458 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 249 LLIQEFACAG-------LLKRME 264
            LI   +  G       LLKRME
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRME 540



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 35/205 (17%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+   +++    + G +E A   FQEM    L P+   Y ++I G+SK GK + AL  L
Sbjct: 477 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLL 536

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID-MCLKMMK-------------LDG---- 239
             M+EM  +P  ++Y+ +I    K   + E + +C KM++             +DG    
Sbjct: 537 KRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRN 596

Query: 240 -----------------CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                            C P+  TY+ LI      G     E   K M  K +     T 
Sbjct: 597 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 656

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLN 307
            +++D ++  G +D      +R+++
Sbjct: 657 TSLIDGFVVLGRIDHAFLLLRRMVD 681



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           ++E A   +++M    ++PSL  +N++I+  SK GK  EA L L+++ + +LSP   TY 
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI  + + +  D        M  +GC P+ +TY+ LI      G +       + M+ K
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLC 150
           QI Q+D   + D F      +    R+R +   F ++  +  E    N      +I  LC
Sbjct: 223 QIFQYD--LSPDVF-TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLC 279

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
            EG ++EA+   +EM    ++P++  Y   I     I    EA+  +  MK+    P   
Sbjct: 280 NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339

Query: 211 TYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           TY  LI    +  K+   I +  KM+K +G  P+ +TYN LI E    G
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGG 387



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F ++ ++EK +   N +    +I  LC+EG  +EA    +EME   L P    + S+I 
Sbjct: 602 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLID 661

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           G+  +G+ + A L L  M +M   P   TY  L++   K
Sbjct: 662 GFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    ++ A   F  M      P+   Y+++I+G    G+ +EAL  L EM E  + P  
Sbjct: 244 CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY   I A    +  +E    +  MK  GC P+  TY  LI   +  G L+   G Y  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 270 MLTKRMHLRSSTMVAILD 287
           ML + +   + T  A+++
Sbjct: 364 MLKEGLVPNTVTYNALIN 381


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + A+IR L  + +   IPQ   ++K +       +      +I  LC+ G +  AVR F+
Sbjct: 273 YTALIRGLLQAGK---IPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFK 329

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME   L P+  +Y+++IHG  K  K + AL  L +MK+   +P + TY+ LI    K  
Sbjct: 330 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 389

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
             +        M   GC PD  TYN+L+  F  AG      G +  M
Sbjct: 390 DVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 117/284 (41%), Gaps = 7/284 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  L +   +++AV   +++      P++  YN++++G  K+G+  EA+  L ++ +  
Sbjct: 171 IVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 230

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI   GK K   E     K M L G   D + Y  LI+    AG + +  
Sbjct: 231 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQAS 290

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK----RLLNSRTPLKEDLVRKL 320
             YK+M ++       T+  ++D     G +    + +K    R L     +   L+  L
Sbjct: 291 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
            +    +     L  +     +    T  +    L     + + R   +   EM  A  +
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR---AFFDEMLEAGCK 407

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +V T NI++  + K  +      +  ++ + H  P++VT G L
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTL 451



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 2/146 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R++    +M   ++K+    +      +I  LC+ G +E A   F EM     KP + 
Sbjct: 352 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 411

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN ++ G+ K G  + A    ++M   + SP   TY  LI    K +   +  +  + M
Sbjct: 412 TYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHM 471

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLK 261
           K  GC PD   Y+ L+     +G L+
Sbjct: 472 KERGCPPDSFVYSSLVDGLCKSGKLE 497



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 33/293 (11%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +  A+  F+          +  Y +I+   +K  K  +A+  + ++     +P 
Sbjct: 140 LCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPT 199

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY+ L+    K    +E ID+  K++  +GC+PD +TY  LI      G  KR    Y
Sbjct: 200 IATYNALLNGLCKMGRLEEAIDLLRKIVD-NGCTPDVVTYTSLIDGL---GKEKRSFEAY 255

Query: 268 KSMLTKRMHLRSSTM-----VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE-------- 314
           K  L K M LR   +      A++   +  G + +    YK  + S+  + +        
Sbjct: 256 K--LFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT-MTSQGCVPDVVTLSTMI 312

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-- 372
           D + K   +     +F  ++  G      +   E+V+    L H  L   R +D  +   
Sbjct: 313 DGLCKAGRIGAAVRIFKSMEARG------LAPNEVVY--SALIHG-LCKARKMDCALEML 363

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +M+ A    +  T NI++    K  D +  R    E+     KPD+ T  IL
Sbjct: 364 AQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 416


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I      G +EEAV+ F+E+E  + KP +  +NS+I+   K G  +EA +   E
Sbjct: 320 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKE 379

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLI 251
           M+E  LSP   TY  LI+ +GK    D+++M  ++   M  +GCSP+ +TYN+L+
Sbjct: 380 MREEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEGCSPNIVTYNILL 431



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G   EA R F  M  F  +   + Y S++      GK  EAL  L+++ E  
Sbjct: 220 LVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKR 279

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +S  +  Y+ ++ A GK K   ++    + MK DG SPD  +YN+LI  F  AG
Sbjct: 280 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAG 333



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS    + F+++  + +   +++ F    ++  L ++  +++    F++M+    +P   
Sbjct: 54  RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEY 113

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    KIGK +E+L    EM E   +P    Y+ +IQA    +M D+       M
Sbjct: 114 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 173

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRME 264
             + C P+  T+++++      G L R++
Sbjct: 174 VENNCRPNGFTFSVILNVLVAEGQLGRLD 202



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I  + + G+  EA+    E++  +  P   +++ LI   GK
Sbjct: 307 YEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGK 366

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               DE  M  K M+ +G SPD +TY+ LI+ F 
Sbjct: 367 NGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFG 400


>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
          Length = 482

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 128/273 (46%), Gaps = 18/273 (6%)

Query: 155 MEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+     +P++  YN ++  +++ G   +  +   ++ E  +SP   TY+
Sbjct: 163 LAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYN 222

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK + C PD IT+N+LI  +       +ME  +KS+L  
Sbjct: 223 GVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS 282

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF--- 330
           +      T  +++  Y    + +K E    ++  +    K + V +  E  I  Y +   
Sbjct: 283 KEKPTHPTFNSMITNYGKARLREKAECVLDKM--TEMGFKPNYVTQ--ECLIMMYAYCDC 338

Query: 331 -SRLDDLGDDLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVT 384
            SR   + D+L S      L     +L   C     + + + +DSV+++        + +
Sbjct: 339 VSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP----SAS 394

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           T  ++  AY K  D K ++ LL  + ++ + P+
Sbjct: 395 TYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++  +G +  A+  F +M     +P   +YNS+I    H   K     +AL +  +
Sbjct: 113 KLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKALAKALGYFEK 172

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK ++   P   TY+ L++A+ +     ++D+  K +     SPD  TYN ++  +   G
Sbjct: 173 MKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNG 232

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++  ME     M + +      T   ++D+Y      DKME+ +K LL S    KE    
Sbjct: 233 MITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS----KEKPTH 288

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL-LSHRGIDSVVR----- 372
                 I NY  +RL +  + +  ++  TE+ +    ++  CL + +   D V R     
Sbjct: 289 PTFNSMITNYGKARLREKAECVLDKM--TEMGFKPNYVTQECLIMMYAYCDCVSRARQIF 346

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ S++   ++++ N +L AY           LL  +  +   P   T  +LY A
Sbjct: 347 DELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKA 402



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 89/215 (41%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K I++ + N      ++    + G  ++    F++++   + P +  YN ++  Y 
Sbjct: 170 FEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYG 229

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YG+ + +D+++   K +      P H 
Sbjct: 230 KNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHP 289

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E     M          T   ++  Y     + +  + +  L
Sbjct: 290 TFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDEL 349

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           ++S+  +    V  + + Y  N +    D L D +
Sbjct: 350 VSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSV 384



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           ++R    +  ++Q+  +F   K++++S ++   +    ++    + G++ E       M+
Sbjct: 189 LLRAFAQAGDTKQLDILF---KDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMK 245

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P +  +N +I  Y +   F++       +      P   T++ +I  YGK ++ +
Sbjct: 246 SNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLRE 305

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           + +  L  M   G  P+++T   LI  +A    + R    +  +++ + ++  S++ A+L
Sbjct: 306 KAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAML 365

Query: 287 DAYMNFGM 294
           DAY   G+
Sbjct: 366 DAYCMNGL 373



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N+ T NI+L A+ +  D K L +L  +L    V PDI T   + DA    +   G +   
Sbjct: 182 NIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDA----YGKNGMITEM 237

Query: 442 KRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           + +    K+ +   D +   +    YG+       E+V+ SL     +    T+ ++I
Sbjct: 238 ESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMI 295


>gi|115463017|ref|NP_001055108.1| Os05g0294600 [Oryza sativa Japonica Group]
 gi|113578659|dbj|BAF17022.1| Os05g0294600 [Oryza sativa Japonica Group]
 gi|125551683|gb|EAY97392.1| hypothetical protein OsI_19323 [Oryza sativa Indica Group]
 gi|215697097|dbj|BAG91091.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630985|gb|EEE63117.1| hypothetical protein OsJ_17925 [Oryza sativa Japonica Group]
          Length = 757

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +EEA   F EM+   L  +   YN ++  Y +  +       L EM+++ 
Sbjct: 415 LINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLG 474

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P + +Y+ LI+ YG+ K M ++ +     MK DG  P   TY  L+  +A  GL ++ 
Sbjct: 475 LRPNARSYNFLIRVYGQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKA 534

Query: 264 EGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
             TY  M  KR  L+ S  T  A++D +   G  +K+ + ++ ++N + P    +   + 
Sbjct: 535 YLTYVDM--KREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVL 592

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKV 379
           +   K+ ++ +  D+  +   R G    V    +L +A      H  +  +++EM + ++
Sbjct: 593 DGLAKHGLYVQATDVIYEF-RRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMEL 651

Query: 380 RWNVTTANIILLAYLKMKDF 399
           + +  T + ++ AY +++DF
Sbjct: 652 KPDSVTYSTMIYAYARVRDF 671



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 22/288 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I + C+ GL  EA+     ME   +  +  +YN++I+ Y K  +  EA     EMKE  
Sbjct: 380 LIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKG 439

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM- 263
           LS  + TY+ L+ AY +    + ++  L  M+  G  P+  +YN LI+ +   G  K+M 
Sbjct: 440 LSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVY---GQQKKMS 496

Query: 264 ---EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
              E  +  M T  +   SST  ++L AY   G+ +K    Y         +K + ++  
Sbjct: 497 EKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTY-------VDMKREGLKPS 549

Query: 321 AEVYIKNY-MFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACL--LSHRGI----DSVVR 372
            E Y     MF R  D    + + R    E V   R++ H  L  L+  G+      V+ 
Sbjct: 550 LETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVIY 609

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           E   A ++  V T NI++ A+ +      L  LL E+    +KPD VT
Sbjct: 610 EFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVT 657



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+    ++ + W+++  EK          ++  L + GL  +A     E     L+P++ 
Sbjct: 562 RAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVM 621

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ +++ G+  +    L EM  M L P S TY  +I AY + + +       K+M
Sbjct: 622 TYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYARVRDFSRAFYYHKLM 681

Query: 236 KLDGCSPDHITYNLLI 251
              G  PD  +Y  L+
Sbjct: 682 VRSGQLPDVSSYKKLL 697



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 3/152 (1%)

Query: 141 NSQKIIGMLCE---EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            S     +LC     GL E+A   + +M+   LKPSLE Y ++I  + + G   + +   
Sbjct: 514 TSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETW 573

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    +      +  ++    K+ +Y +    +   +  G  P  +TYN+L+  FA  
Sbjct: 574 RSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARG 633

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           G   ++    K M    +   S T   ++ AY
Sbjct: 634 GQHYKLPQLLKEMAAMELKPDSVTYSTMIYAY 665


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 121/299 (40%), Gaps = 20/299 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++G   ++   F EM+   + P++  YN +I G+   G+++ A   L EM E  
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ LI A+ K   + E       M   G  P+ ITYN +I  F     L   E
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKL 320
             +  M TK       T   ++D Y     +D     + +  +R L + T     L+   
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--------LLSHRGIDSVVR 372
             V   N       DL   + S     ++V C  LL   C        L   + +     
Sbjct: 439 CLVGDLNAAL----DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 494

Query: 373 EMESA----KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +++++     V  +V T NI++   +    F     L  E+P R + PD +T   + D 
Sbjct: 495 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 161/398 (40%), Gaps = 21/398 (5%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ +  D++  I +  +  F +  ++  LC EG + EAV     M    L+P    Y + 
Sbjct: 166 RVSEALDLFHQICRPDVLTFTT--LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTF 223

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + G  K+G    AL  L +M+E++ + P    Y  +I    K   + +       M+  G
Sbjct: 224 VDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKG 283

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P+ +TYN +I  F  +G     +   + ML +++     T  A+++A++  G   +  
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y  +L             + + + K       +D+   +A++    ++     L+   
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 360 CLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           C    + ID    ++ EM    +  N  T N ++  +  + D      L  ++ +  V P
Sbjct: 404 C--GAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVE---INTDPLVLAVYG 464
           DIVT   L D          ALEM+K +            F  VE   +  + L+  +  
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +G FL   EE+Y  +          TY ++ID + K +
Sbjct: 522 EGKFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 149 LCEEGLMEEAVRAFQEMEGF-----------ALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           LC+ G +++A+  F+ M+              ++P +  YN +I G    GKF EA    
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 532

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    + P + TY  +I    K    DE       M     SP+ +T+N LI  +  A
Sbjct: 533 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 258 G 258
           G
Sbjct: 593 G 593



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 15/222 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C    +++ +    EM    L  +   YN++IHG+  +G  N AL    +
Sbjct: 394 FTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQ 453

Query: 200 MKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMK----------LDGCSPDHITYN 248
           M    + P   T + L+       K+ D ++M   M K           +G  PD +TYN
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYN 513

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +LI      G     E  Y+ M  + +   + T  +++D       LD+  + +  + + 
Sbjct: 514 ILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSK 573

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                      L   Y K     R+DD G +L   +GR  +V
Sbjct: 574 SFSPNVVTFNTLINGYCKA---GRVDD-GLELFCEMGRRGIV 611



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 121 QIPQVFDMWKNIEKSRIN-----EFNSQK--------IIGMLCEEGLMEEAVRAFQEMEG 167
           ++    +M+K ++KS+++      FN  +        +I  L  EG   EA   ++EM  
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P    Y+S+I G  K  + +EA      M   + SP   T++ LI  Y K    D+
Sbjct: 538 RGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDD 597

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  M   G   D I Y  LI  F   G +      ++ M++  ++  + T+  +L 
Sbjct: 598 GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 657

Query: 288 AY 289
            +
Sbjct: 658 GF 659


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 128/312 (41%), Gaps = 40/312 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  L E G   EA+  F EM     +P++  Y  +I+   K  K  E    L+EM E  
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI  Y K  M +     L +M  + C+P+  TYN LI  F     + R  
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAM 199

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE--------DL 316
                ML  R+     T  +++      G LD   +    L+N    + +        D 
Sbjct: 200 ALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLN-LMNENGVVPDQWTYSVFIDT 258

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV--WCL------------RLLSHACLL 362
           + K   +   N +F+ L + G   A+ +  T L+  +C             R+L+  CL 
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIK-ANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP 317

Query: 363 SHRG----IDSVVRE---------MES---AKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           +       ID + +E         MES     ++  V T  I+++A LK  DF +   +L
Sbjct: 318 NSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377

Query: 407 SELPTRHVKPDI 418
            ++ +   +PD+
Sbjct: 378 DQMVSSGYQPDV 389



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 105/273 (38%), Gaps = 22/273 (8%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W    F+    +  +I +   ++ ++++  I  NE     +I   C+ G M++A      
Sbjct: 250 WTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDR 309

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+   YN++I G  K  K  EALL +  M +  L     TY  LI A  K   
Sbjct: 310 MLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGD 369

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D     L  M   G  PD   Y   I  F   G +K  E     M  + +   + T   
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTL 429

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTP-------------LKEDLVRKLAEVY----IKN 327
           ++DAY   G+L+      KR+ ++                LKE+L +K   V     I N
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
             F+   D+ D        T L    ++L H C
Sbjct: 490 VFFA---DVADVWKMMKFETALELFEKMLEHGC 519



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 124/314 (39%), Gaps = 48/314 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE    ++I   C +  +  A+    +M    L PS+  YNS+IHG  KIG  + A   L
Sbjct: 178 NERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLL 237

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M E  + P   TY   I    K    +E ++    +K  G   + + Y  LI  +  A
Sbjct: 238 NLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKA 297

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +         MLT+     SST  A++D       L K  K  + LL     L E ++
Sbjct: 298 GKMDDANSLLDRMLTEDCLPNSSTYNALIDG------LCKERKVQEALL-----LMESMI 346

Query: 318 RKLAEVYIKNY---MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           +K  +  +  Y   + + L +   D A RI                          + +M
Sbjct: 347 QKGLKCTVPTYTILIVAMLKEGDFDYAHRI--------------------------LDQM 380

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
            S+  + +V      + A+    + K    ++S +  R V PD +T  ++ DA    + G
Sbjct: 381 VSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDA----YGG 436

Query: 435 TG----ALEMWKRI 444
            G    A ++ KR+
Sbjct: 437 LGLLNPAFDVLKRM 450



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 29/180 (16%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFW--AVIRFLKNSSRSRQI 122
           TL++++Y     LN     L +          H       H     + +  KN +    I
Sbjct: 428 TLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSI 487

Query: 123 PQVF-----DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           P VF     D+WK ++                      E A+  F++M      P++  Y
Sbjct: 488 PNVFFADVADVWKMMK---------------------FETALELFEKMLEHGCSPNINTY 526

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMK 236
             +I G  K+G+   A    + M E  +SP    Y+ L+    +  +Y D + +   MM+
Sbjct: 527 AKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMME 586


>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
          Length = 482

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 128/273 (46%), Gaps = 18/273 (6%)

Query: 155 MEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           + +A+  F++M+     +P++  YN ++  +++ G   +  +   ++ E  +SP   TY+
Sbjct: 163 LAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYN 222

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G++ AYGK  M  E++  L  MK + C PD IT+N+LI  +       +ME  +KS+L  
Sbjct: 223 GVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS 282

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF--- 330
           +      T  +++  Y    + +K E    ++  +    K + V +  E  I  Y +   
Sbjct: 283 KEKPTHPTFNSMITNYGKARLREKAECVLDKM--TEMGFKPNYVTQ--ECLIMMYAYCDC 338

Query: 331 -SRLDDLGDDLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVT 384
            SR   + D+L S      L     +L   C     + + + +DSV+++        + +
Sbjct: 339 VSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP----SAS 394

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           T  ++  AY K  D K ++ LL  + ++ + P+
Sbjct: 395 TYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++  +G +  A+  F +M     +P   +YNS+I    H   K     +AL +  +
Sbjct: 113 KLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSRDKSKALAKALGYFEK 172

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK ++   P   TY+ L++A+ +     ++D+  K +     SPD  TYN ++  +   G
Sbjct: 173 MKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNG 232

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++  ME     M + +      T   ++D+Y      DKME+ +K LL S    KE    
Sbjct: 233 MITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS----KEKPTH 288

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL-LSHRGIDSVVR----- 372
                 I NY  +RL +  + +  ++  TE+ +    ++  CL + +   D V R     
Sbjct: 289 PTFNSMITNYGKARLREKAECVLDKM--TEMGFKPNYVTQECLIMMYAYCDCVSRARQIF 346

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ S++   ++++ N +L AY           LL  +  +   P   T  +LY A
Sbjct: 347 DELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKA 402



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 89/215 (41%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K I++ + N      ++    + G  ++    F++++   + P +  YN ++  Y 
Sbjct: 170 FEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYG 229

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YG+ + +D+++   K +      P H 
Sbjct: 230 KNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHP 289

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E     M          T   ++  Y     + +  + +  L
Sbjct: 290 TFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDEL 349

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           ++S+  +    V  + + Y  N +    D L D +
Sbjct: 350 VSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSV 384



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           ++R    +  ++Q+  +F   K++++S ++   +    ++    + G++ E       M+
Sbjct: 189 LLRAFAQAGDTKQLDILF---KDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMK 245

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P +  +N +I  Y +   F++       +      P   T++ +I  YGK ++ +
Sbjct: 246 SNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLRE 305

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           + +  L  M   G  P+++T   LI  +A    + R    +  +++ + ++  S++ A+L
Sbjct: 306 KAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAML 365

Query: 287 DAYMNFGM 294
           DAY   G+
Sbjct: 366 DAYCMNGL 373



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N+ T NI+L A+ +  D K L +L  +L    V PDI T   + DA    +   G +   
Sbjct: 182 NIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDA----YGKNGMITEM 237

Query: 442 KRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           + +    K+ +   D +   +    YG+       E+V+ SL     +    T+ ++I
Sbjct: 238 ESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMI 295


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 121/283 (42%), Gaps = 43/283 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M  + G   +A + F +M    +  S   +NS++   S  G + E     ++M+   
Sbjct: 255 MIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSLM---SFEGDYKEVSSIYDQMQRAG 311

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   +Y  LI+AYGK +  +E     + M   G  P   +YN+L+  FA +GL++  +
Sbjct: 312 LKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQ 371

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K+M   R+     +   +L AY+N   +D  EKF++R       +KED +R    VY
Sbjct: 372 TVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRR-------IKEDGLRPNVVVY 424

Query: 325 ---IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
              +K Y  S+LD++      ++ R                       V   M    V  
Sbjct: 425 GTLMKGY--SKLDNV-----EKVMR-----------------------VYERMRMQGVEP 454

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           N T    I+  + +  DF +  +  +E+ TR   PD     IL
Sbjct: 455 NQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNIL 497



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 107/280 (38%), Gaps = 29/280 (10%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++  Y K+G F+ A   L  M +    P   +   L++AYG+ K Y + +     M+  G
Sbjct: 147 LVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSG 206

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-KRMHLRSSTMVAILDAYM--NFGMLD 296
             P  ITY ++++        K  E  ++ +L+ KR   +    +  +  YM    G   
Sbjct: 207 PEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYA 266

Query: 297 KMEKFYKRLLNSRTPLK----------EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
           +  K + ++     P            E   ++++ +Y              D   R G 
Sbjct: 267 QARKLFAQMSERGIPQSTVTFNSLMSFEGDYKEVSSIY--------------DQMQRAGL 312

Query: 347 TELVWCLRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
              V    LL  A   + R     +V  EM  A +R    + NI+L A+      +  + 
Sbjct: 313 KPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQT 372

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           +   +    V+PD+ +   +  A     D  GA + ++RI
Sbjct: 373 VFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRI 412



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMW--KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F  +I   K S    Q  ++F     + I +S +  FNS     ++  EG  +E    + 
Sbjct: 252 FHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVT-FNS-----LMSFEGDYKEVSSIYD 305

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M+   LKP +  Y+ +I  Y K  +  EA     EM +  + P   +Y+ L+ A+    
Sbjct: 306 QMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISG 365

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           + +E     K M+     PD  +Y  ++  +  A  +   E  ++ +  K   LR + +V
Sbjct: 366 LVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRI--KEDGLRPNVVV 423

Query: 284 --AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              ++  Y     ++K+ + Y+R+        + +   + +V+ +N  F 
Sbjct: 424 YGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFG 473



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/97 (19%), Positives = 46/97 (47%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           M+ A + F+ ++   L+P++ +Y +++ GYSK+    + +     M+   + P    +  
Sbjct: 402 MDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTT 461

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++  +G+   +    +    M+  G  PD    N+L+
Sbjct: 462 IMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNILL 498


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 44/330 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +    G +E     F  M    LKP++  YN+++  Y+  G   EAL   N +K   
Sbjct: 318 IIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSG 377

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL----- 259
           L P   +Y  L+ +YG+ +   +     +MMK D   P+ ++YN +I  +   GL     
Sbjct: 378 LRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAV 437

Query: 260 --LKRME--GTYKSMLT------------------------KRMHLRSSTMV--AILDAY 289
             L+ ME  G Y + ++                        +R H++ +T+   + + +Y
Sbjct: 438 EVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSY 497

Query: 290 MNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           MN G  +K    Y+ +  S+  P        ++           L+ L + +  +I  T+
Sbjct: 498 MNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTK 557

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
             +    ++ A        +S+  +M+ A    +V T  ++L AY   + +K    LL E
Sbjct: 558 EAYSSGKITEA--------ESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQE 609

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           +   +++PD +    L  A   G D +  L
Sbjct: 610 MEEYNIQPDTIACSALMRAFNKGGDPSKVL 639



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 148/354 (41%), Gaps = 20/354 (5%)

Query: 77  LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR 136
           LN  + R  +K + PL I +     + +H   V R++KN         +++M        
Sbjct: 90  LNRWVGRFARK-NFPLLIKEITQKGSIEHSILVFRWMKNQRNYCARTDIYNM-------- 140

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
                   +I +       ++A   F EM+ +  KP  E  N++I+ + + G++  A+  
Sbjct: 141 --------MIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNI 192

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           + +M +  + P   TY+ LI A G    + E     K M  +G  PD +T+N+++  +  
Sbjct: 193 MEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKT 252

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
                +    ++ M    +   ++T+  I+      G  +K    +K +   R     D+
Sbjct: 253 GAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDV 312

Query: 317 V--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVRE 373
           V    +  +Y  N        +   + +   +  +V    L+ ++A    ++   SV   
Sbjct: 313 VTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNA 372

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++++ +R +V +   +L +Y + +  K  R +   +    +KP+IV+   + DA
Sbjct: 373 IKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDA 426



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 17/137 (12%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N       IG     G  E+A   ++ M    + P    +  +I G  K+ K+ EAL 
Sbjct: 484 KLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALE 543

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF- 254
           FL+EM ++ +    + Y       GK     E +     MK+ GCSPD +TY +++  + 
Sbjct: 544 FLSEMMDLKIPMTKEAYSS-----GK---ITEAESMFNKMKMAGCSPDVVTYTMMLHAYN 595

Query: 255 -------ACAGLLKRME 264
                  ACA LL+ ME
Sbjct: 596 AAEHWKKACA-LLQEME 611


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 141/335 (42%), Gaps = 43/335 (12%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM++   KS +  FN   +I +LC+EG +++A      ME F +KP++  YN+++ GYS 
Sbjct: 216 DMYRMEIKSNVYTFNI--MINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSL 273

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+   A + ++EMK     P   TY+ ++          E+   L+ MK  G  PD ++
Sbjct: 274 RGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEV---LREMKGIGLVPDSVS 330

Query: 247 YNLLIQEFACAGLLKRM---------EG------TYKSML-------------------- 271
           YN+LI+  +  G L+           +G      TY +++                    
Sbjct: 331 YNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 390

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            K + L S T   +++ Y   G   K    +  ++       +     L  V  +     
Sbjct: 391 EKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTR 450

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANII 389
             D+L + +  +  + +LV    L+   C   +  R   S+++EM+   +  +  T N +
Sbjct: 451 EADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAF-SLLKEMDRMNIDPDDVTYNCL 509

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +        F+  R L+ E+  R +KPD ++   L
Sbjct: 510 MRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTL 544



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            +F    +I +LC      EA   F+++ G  +KP L + N+++ G+   G  + A   L
Sbjct: 432 TQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLL 491

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM  MN+ P   TY+ L++       ++E    +  MK  G  PDHI+YN LI  ++  
Sbjct: 492 KEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 551

Query: 258 G 258
           G
Sbjct: 552 G 552



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC EG  EEA     EM+   +KP    YN++I GYSK G    A +  +EM  +  +P 
Sbjct: 513 LCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPT 572

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             TY+ L++   K +  +  +  L+ MK +G  P+  ++  +I+  +
Sbjct: 573 LLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMS 619



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 108/270 (40%), Gaps = 8/270 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+  +++EA+  F  M+     P  E  N I+   S++ +   A +F  +M  M +    
Sbjct: 167 CQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNV 226

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T++ +I    K     +    L +M+  G  P  +TYN L+Q ++  G ++        
Sbjct: 227 YTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISE 286

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNY 328
           M +K       T   IL    N G   ++ +  K + L   +     L+R  +       
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLET 346

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTA 386
            F+  D++      + G     +    L H   + ++    + ++RE+    +  +  T 
Sbjct: 347 AFAYRDEM-----VKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 401

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           NI++  Y +  D K    L  E+ T  +KP
Sbjct: 402 NIVINGYCQHGDAKKAFALHDEMMTDGIKP 431


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 112/289 (38%), Gaps = 11/289 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  L + A   FQ+M    +KP+++ YN +IHGY  IGK+ E +  L EM    
Sbjct: 244 VIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGG 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L+    K     E       M   G  P   TY +++  +A  G L  M 
Sbjct: 304 PKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMH 363

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR--KLAE 322
                M+   +            AY   G++DK    + ++   +  L  D V    L +
Sbjct: 364 DLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKM--RQQGLSPDAVSYGALID 421

Query: 323 VYIKNYMFSRLDDLGDDLASRIGR---TELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
              K     R+DD        I      ++V    L+   C +     ++ +  EM +  
Sbjct: 422 ALCK---LGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG 478

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  N+   N IL    K       + L+  +    V+PD+++   L D 
Sbjct: 479 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDG 527



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 75  QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN--I 132
           +A++ L+QR+  ++ C    + ++          +++ L N  R+ +  ++  M  +  +
Sbjct: 147 EAMDVLLQRM-PELGCMPDTVSYN---------ILLKGLCNEKRAEEALELLHMMADDQV 196

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
                N  +   +I     EG +++    F EM    + P +  Y ++I G  K   F+ 
Sbjct: 197 WSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDR 256

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     +M +  + P  DTY+ LI  Y     + E+   L+ M   G  P+  TY  L+ 
Sbjct: 257 AEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLN 316

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
                G  +     + SM+ K +    +T   +L  Y   G L +M
Sbjct: 317 YLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEM 362



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 9/289 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  I+  LC+EG + E  R    +E   ++P +  YN++I G+   G  +EA   L  
Sbjct: 486 FNT--ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEG 543

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M  + L P S +Y+ L+  Y K    D      + M  +G +P  +TYN ++        
Sbjct: 544 MVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKR 603

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +  Y +M+         T   IL+       +D+  K ++ L +    L       
Sbjct: 604 FSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNI 663

Query: 320 LAEVYIKNYMFSRLDDLGDDLAS--RIGRTELVWCLRLLSHACL--LSHRGIDSVVREME 375
           +    +K     R +D  D  A+    G  + V   RL+    +   S    DS+   ME
Sbjct: 664 MIGALLKG---GRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAME 720

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                 N    N ++   L   D       LS+L  R+   +  T  +L
Sbjct: 721 KNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSML 769



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC     E+    F EM    + P++  +N+I+    K G+  E    ++ ++ M + P 
Sbjct: 458 LCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD 517

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y+ LI  +      DE    L+ M   G  PD  +YN L+  +  AG +      ++
Sbjct: 518 VISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFR 577

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
            ML+  +     T   IL          + ++ Y  ++NS T
Sbjct: 578 KMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGT 619



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/428 (17%), Positives = 163/428 (38%), Gaps = 62/428 (14%)

Query: 21  LNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNAL 80
           LN   KN    +  FF  ++I K I        PS+  +      +++  Y    AL+ +
Sbjct: 315 LNYLCKNGRCREARFFFDSMIGKGIK-------PSVTTYG-----IMLHGYATKGALSEM 362

Query: 81  IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--N 138
              LN  V+        +G     H + +  F    ++   I +  D++  + +  +  +
Sbjct: 363 HDLLNLMVA--------NGISPNHHIFNI--FFSAYAKCGIIDKAMDIFNKMRQQGLSPD 412

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
             +   +I  LC+ G +++A   F +M    + P + +++S+++G   + K+ +      
Sbjct: 413 AVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFF 472

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EM  + + P    ++ ++    K     E    +  ++  G  PD I+YN LI     AG
Sbjct: 473 EMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAG 532

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            +       + M++  +   S +   +L  Y   G +D     ++++L++          
Sbjct: 533 TIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSN---------- 582

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMES 376
                                     G T  V     + H    + R  ++  +   M +
Sbjct: 583 --------------------------GITPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 616

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           +  +W++ T NIIL    K         +   L ++ ++ +I+T  I+  A   G     
Sbjct: 617 SGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKED 676

Query: 437 ALEMWKRI 444
           A++++  I
Sbjct: 677 AMDLFAAI 684



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 68/368 (18%), Positives = 135/368 (36%), Gaps = 54/368 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLE----IYNSIIHGYSKIGKFNEAL-LFLNE 199
           +IG  C  G +E    AF    G  LK        + N +++G     +  EA+ + L  
Sbjct: 100 LIGCFCRMGHLEHGFAAF----GLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQR 155

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLIQEFAC 256
           M E+   P + +Y+ L++     K  +E    L MM  D    C P+ ++Y+ +I  F  
Sbjct: 156 MPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFT 215

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G + +    +  M+ + +     T   ++D      + D+ E  +++++++      D 
Sbjct: 216 EGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDT 275

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              L   Y+                  IG+    W             + +  ++ EM +
Sbjct: 276 YNCLIHGYLS-----------------IGK----W-------------KEVVRMLEEMSA 301

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
              + N  T   +L    K    +  R     +  + +KP + T GI+      G+   G
Sbjct: 302 GGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLH----GYATKG 357

Query: 437 ALEMWKRIGFLFKTVEINTD----PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492
           AL     +  L     I+ +     +  + Y K   +    ++++ +          +Y 
Sbjct: 358 ALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYG 417

Query: 493 NLIDLVIK 500
            LID + K
Sbjct: 418 ALIDALCK 425



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 65/299 (21%)

Query: 75   QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI----RFLKNSSRSRQIPQVF--DM 128
            Q LNAL++RL            H GD ++   +        F   +S +  +  +F  D 
Sbjct: 729  QMLNALVRRL-----------LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDE 777

Query: 129  WKNIEKSR------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +++  KS       +NE NS  +I    +   +++A   F+EM    L P +  YN+I+H
Sbjct: 778  YQHHAKSLPKKYRILNEANSSALIK---KARRIDDAYSLFREMLMKGLTPDVVTYNTILH 834

Query: 183  GYSKIGKFNEA----LLFLNEMKEMNLSPQSDTYDGLIQAYG---KYKMYDEIDMCLKMM 235
            G  + G+F+EA    L  +N   +MN+   +   +GL ++      +KM+    +C K +
Sbjct: 835  GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQS--LCSKGL 892

Query: 236  KLD------------------------------GCSPDHITYNLLIQEFACAGLLKRMEG 265
            +L+                              G  PD +TY L+ +     G L+  +G
Sbjct: 893  QLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDG 952

Query: 266  TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M      L S  + A++   +  G + +   +  +L      L+     +L  ++
Sbjct: 953  LFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLF 1011



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 145/345 (42%), Gaps = 40/345 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+   ++EA++ FQ +    L+ ++  +N +I    K G+  +A+     +    
Sbjct: 629 ILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 688

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L     TY  +++   +    +E D     M+ +G +P+    N L++     G + R  
Sbjct: 689 LVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR-A 747

Query: 265 GTYKSMLTKR-MHLRSSTMVAILDAY------------------MNFGMLDKMEKFYKRL 305
           G Y S L +R   + +ST   ++  +                  +N      + K  +R+
Sbjct: 748 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRI 807

Query: 306 LNSRTPLKEDLVRKLA-EVYIKN------YMFSRLDDLGDDLASRI-GRTEL-VWCLRLL 356
            ++ +  +E L++ L  +V   N      +   R  +  +   S I  RT++ ++   ++
Sbjct: 808 DDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNII 867

Query: 357 SHACLLSHRGIDSVVREME---SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
            +  L     +D   +  +   S  ++ N+ T NI++ A LK    +    L + +P   
Sbjct: 868 LNG-LCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 414 VKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
           + PD+VT  ++ +         G+LE +     LF T+E +  PL
Sbjct: 927 LVPDVVTYRLVAE----NLIEEGSLEEFDG---LFLTMEKSGTPL 964


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS       D+ + +E+  +    F    II  LC +G ++ A+  F+EME   +K S+ 
Sbjct: 195 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 254

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++ G  K GK+N+  L L +M    + P   T++ L+  + K     E +   K M
Sbjct: 255 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 314

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ ITYN L+  +     L         M+  +      T  +++  Y     +
Sbjct: 315 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 374

Query: 296 DKMEKFYKRL 305
           D   K ++ +
Sbjct: 375 DDGMKVFRNI 384



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 9/291 (3%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG + EAV     M     +P +  YNSI++G  + G  + AL  L +M+E N+     T
Sbjct: 161 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 220

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I +  +    D      K M+  G     +TYN L++    AG         K M+
Sbjct: 221 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 280

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           ++ +     T   +LD ++  G L +  + YK ++             L + Y      S
Sbjct: 281 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 340

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANI 388
             +++ D +       ++V    L+   C++    +D    V R +    +  N  T +I
Sbjct: 341 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR--VDDGMKVFRNISKRGLVANAVTYSI 398

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           ++  + +    K    L  E+ +  V PD++T GIL D    G    G LE
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD----GLCDNGKLE 445



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F++++   +   + +Y +II G  K GK  +A      +    + P 
Sbjct: 438 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 497

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  +I    K     E ++ L+ M+ DG +P+  TYN LI+
Sbjct: 498 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 541



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  +++++++KS+++        II  +C+ G +E+A   F  +    +KP++  Y 
Sbjct: 443 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 502

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I G  K G  +EA + L +M+E   +P   TY+ LI+A+ +          ++ MK  
Sbjct: 503 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 562

Query: 239 GCSPDHITYNLLI 251
           G S D  +  ++I
Sbjct: 563 GFSADASSIKMVI 575



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 121/315 (38%), Gaps = 58/315 (18%)

Query: 118 RSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           RSR +P + D  +     +R  +FN   ++   C++           E+ G A   ++  
Sbjct: 71  RSRPLPSLVDFSRFFSAIARTKQFN---LVLDFCKQ----------LELNGIA--HNIYT 115

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
            N +I+ + +  K   A   L ++ ++   P + T++ LI+         E  + +  M 
Sbjct: 116 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 175

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            +GC PD +TYN ++     +G         + M  + +     T   I+D+    G +D
Sbjct: 176 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 297 KMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
                +K +    + S       LVR L                      + G+    W 
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLC---------------------KAGK----W- 269

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
               +   LL        +++M S ++  NV T N++L  ++K    +    L  E+ TR
Sbjct: 270 ----NDGALL--------LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 413 HVKPDIVTIGILYDA 427
            + P+I+T   L D 
Sbjct: 318 GISPNIITYNTLMDG 332


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 120 RQIPQVFDMWKNIEKSRINEF--NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R+I +  ++W+ + ++ +  +      ++   C  G M+EAV+ + EM G    P++  Y
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            +++ G+     F++A   L EMK+  +S    TY+ LI          E+   LK  + 
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +G  P  +TYN +I  F  AG++      Y+ M  K +     T  + +D Y
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGY 571



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 123/300 (41%), Gaps = 17/300 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++G +CE G   E ++ F E EGF   P+   YNSII+G+ K G    A     +
Sbjct: 498 INGLCVVGRVCEVG---EMLKRF-ETEGFV--PTAMTYNSIINGFIKAGMMGSAFAVYQQ 551

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM---KLDGCSPDHITYNLLIQEFAC 256
           M    + P   TY   I  Y K       D+ LKM+   +  G  PD   YN LI  F  
Sbjct: 552 MCAKGIPPNIVTYTSFIDGYCKTSC---CDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQ 608

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +         ML   +    S   + +  Y N  M+++  + Y++++     L    
Sbjct: 609 EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTAT 668

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVRE 373
              L + + K+   +    L  ++ ++ G          L+H  L  +  ID    ++ E
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAK-GNIPDHITFTALTHG-LCRNGDIDDARKLLDE 726

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M    +R NV   N+++  YL+    +    L  E+  R + PD  T  IL   + +G D
Sbjct: 727 MNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSD 786



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCE 151
           Q+  H    + + F  VI+ L N    +    +F   K +  S I + F    +I  LC+
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLF---KEMADSGIPDAFTYNILIHWLCQ 398

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
              + EA+  +++M    +KP +  Y+S++  Y   G  +EA+    EM     +P   T
Sbjct: 399 RRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  L++ +     +D+    L  MK +G S +  TYN LI      G +  +    K   
Sbjct: 459 YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFE 518

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           T+     + T  +I++ ++  GM+      Y+++     P
Sbjct: 519 TEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIP 558



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG+ ++AVR F EM    ++P   + +  I    K+   N ALL L +M++    P   
Sbjct: 189 KEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDF 248

Query: 211 TYDGLI 216
           T++ ++
Sbjct: 249 TFNSVV 254



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%)

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           +F    ++ +L + G MEEA+    E+     K S+ +  +++HGY    +  +AL    
Sbjct: 247 DFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFE 306

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           E     L P   TY  LI+   +  M ++     + M+  G  P    +N++I+      
Sbjct: 307 ETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDK 366

Query: 259 LLKRMEGTYKSM 270
           L K     +K M
Sbjct: 367 LWKDAVSLFKEM 378


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           +++ IE+   + F    ++  +C+ G M+ A +   EM    + P++  Y+++I GY+K 
Sbjct: 204 LYRGIEQ---DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKA 260

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G+ +EAL   NEMK  ++     +Y+ L+  Y K   ++E     K M+  G   D +TY
Sbjct: 261 GRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTY 320

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N L+  +   G  + ++  ++ M  +R+     T   ++D Y   G+  +  + ++    
Sbjct: 321 NALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF-- 378

Query: 308 SRTPLKEDLV 317
            +  LK D+V
Sbjct: 379 KKAGLKADVV 388



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 32/259 (12%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA+   +EME   +K     YN+++ GY K GK+ E      EMK   + P   TY
Sbjct: 296 GRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTY 355

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  Y K  +Y E     +  K  G   D + Y+ LI      GL++        M  
Sbjct: 356 STLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTK 415

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED--LVRKLAEVYIKNYMF 330
           + +     T  +I+DA+   G+++   +       S    KED  +++   ++  +    
Sbjct: 416 EGIRPNVVTYNSIIDAFGRSGIVEDATE-------SEVGDKEDNQIIKIFGQLAAEKTCH 468

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           ++ ++         GR E++         C+L      +V  +M    ++ NV T + IL
Sbjct: 469 AKKENR--------GRQEIL---------CIL------AVFHKMHELDIKPNVVTFSAIL 505

Query: 391 LAYLKMKDFKHLRVLLSEL 409
            A  +   F+   +LL EL
Sbjct: 506 NACSRCNSFEDASMLLEEL 524



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 5/235 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F EM    ++  +  YN+++    K G+ + A   ++EM   ++ P   TY  +I  Y K
Sbjct: 200 FSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAK 259

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               DE       MK      D ++YN L+  +A  G  +      K M +  +   + T
Sbjct: 260 AGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVT 319

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
             A+L  Y   G  +++++ ++ +   R          L +VY K  ++    ++  +  
Sbjct: 320 YNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFK 379

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAY 393
               + ++V    L+   C   +  ++S V    EM    +R NV T N I+ A+
Sbjct: 380 KAGLKADVVLYSALIDALC--KNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 432



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 16/281 (5%)

Query: 169 ALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEM---KEM---NLSPQSDTYDGLIQAYGK 221
            LKP+L  YN++I    K G  FN A    +EM    EM    +     TY+ L+ A  K
Sbjct: 165 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK 224

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               D     +  M      P+ +TY+ +I  +A AG L      +  M    + L   +
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 284

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDD 339
              +L  Y   G  ++     K + +S   +K+D V    L   Y K   +  +  + ++
Sbjct: 285 YNTLLSIYAKLGRFEEALNVCKEMESSG--IKKDAVTYNALLGGYGKQGKYEEVKRVFEE 342

Query: 340 L-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           + A RI    L +   +  ++    ++    V RE + A ++ +V   + ++ A  K   
Sbjct: 343 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 402

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            +     L E+    ++P++VT   + DA    F  +G +E
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSIIDA----FGRSGIVE 439


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 123/306 (40%), Gaps = 6/306 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC++G+  EA+  F EM G  + P + +Y+S++ G  + G+  EAL F  E
Sbjct: 147 FTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 206

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   +S    TY+ LI    +  ++ E+   L +M   G SPD  T+ +LI      G 
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +   +   + M  K       T   +++     G L+   K ++ L +    L       
Sbjct: 267 VGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNI 326

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAK 378
           L   Y K+        L +++  +  +   V    L+   C     R    +  EM++  
Sbjct: 327 LINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 386

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
               ++T  ++L    K    +    L   +     KP+I    IL D    G    G L
Sbjct: 387 QFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLD----GMCRAGKL 442

Query: 439 -EMWKR 443
            E WK+
Sbjct: 443 EEAWKQ 448



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 122/288 (42%), Gaps = 17/288 (5%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G ++EA+  F+EMEG  +   +  YNS+IHG S+ G + E   FLN M +   SP 
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 250

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + T+  LI    K     E    L++M   G  PD +TYN L+      G L+     ++
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAE-- 322
           S+  + + L   +   +++ Y     +D+  + ++ +    L   T     L+  L +  
Sbjct: 311 SLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSG 370

Query: 323 -VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKV 379
            V     +F  +   G  L          +C+ LL   C   H    ID + + ++  + 
Sbjct: 371 RVRTAQKLFVEMQTCGQFLKLS------TYCV-LLDGLCKNGHLEEAID-LFQSIKKTEH 422

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + N+   +I+L    +    +       E+    ++PD +   IL + 
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILING 470



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +EEA+  FQ ++    KP++E+++ ++ G  + GK  EA    +E+ +  L P 
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 460

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           +  Y+ LI       M  E    L  M+  GC PD IT+N++IQ
Sbjct: 461 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 504



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLC 150
           +Q  G + K   + V+  L    ++  + +  D++++I+K+     I  F+   ++  +C
Sbjct: 382 MQTCGQFLKLSTYCVL--LDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSI--LLDGMC 437

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             G +EEA + F E+    L+P    YN +I+G    G  +EA+  L +M+E    P S 
Sbjct: 438 RAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSI 497

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           T++ +IQ   K     E    L+ M+    SPD    ++L+
Sbjct: 498 TFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC+ G +  A + F EM+       L  Y  ++ G  K G   EA+     +K+  
Sbjct: 362 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 205 LSPQSDTY----DGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             P  + +    DG+ +A GK    +K +DEI         +G  PD I YN+LI     
Sbjct: 422 HKPNIEVFSILLDGMCRA-GKLEEAWKQFDEISK-------NGLEPDTIAYNILINGLCN 473

Query: 257 AGLL 260
            G+L
Sbjct: 474 KGML 477


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 17/374 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +GL+EEA      M G  LKP +  YN+II+G  K GK+  A   L+EM ++ 
Sbjct: 295 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 354

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP + TY+ L+    +     + +     M   G  PD ++++ LI   +  G L +  
Sbjct: 355 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 414

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M    +   +     ++  +   G++ +  K    +L     L       +    
Sbjct: 415 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 474

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNV 383
            K  M S  D+L  ++  R    +      L++      +      + EM   + ++ +V
Sbjct: 475 CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDV 534

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALE 439
            T N ++  + K  + + +  L +++ +R + P+ ++ GIL +    G+   G    A  
Sbjct: 535 VTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN----GYCNMGCVSEAFR 590

Query: 440 MWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           +W  +   GF    +  NT   ++  Y +       +E  S++          TY  LI+
Sbjct: 591 LWDEMVEKGFEATIITCNT---IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 647

Query: 497 LVIKHNGKNLDGTF 510
             IK   +N+D  F
Sbjct: 648 GFIKE--ENMDRAF 659



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 136/314 (43%), Gaps = 7/314 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+L + G +++A++ F++M+   L P   IY  +I G+ + G  +EAL   +EM E  
Sbjct: 400 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ ++    K KM  E D     M   G  PD  T+  LI  ++  G + +  
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 519

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+ + +     T   ++D +     ++K+ + +  +++ R          L   Y
Sbjct: 520 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 579

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREMESAKVRWNV 383
                 S    L D++  +     ++ C  ++   C   +    D  +  M    +  + 
Sbjct: 580 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 639

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T N ++  ++K ++      L++++    + PD++T  ++ +    GF   G ++  + 
Sbjct: 640 ITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN----GFSRQGRMQEAEL 695

Query: 444 IGFLFKTVEINTDP 457
           I  + K +E   +P
Sbjct: 696 I--MLKMIERGVNP 707



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 135/322 (41%), Gaps = 7/322 (2%)

Query: 125 VFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +++++ + +S  ++N +    +I  LC+   +E       +ME   + P +  YN++I+
Sbjct: 238 AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 297

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            Y + G   EA   ++ M    L P   TY+ +I    K   Y      L  M   G SP
Sbjct: 298 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 357

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D  TYN+L+ E      +   E  +  M ++ +     +  A++      G LD+  K++
Sbjct: 358 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF 417

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-- 360
           + + N+       +   L   + +N + S    + D++  +    ++V    +L+  C  
Sbjct: 418 RDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 477

Query: 361 -LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            +LS    D +  EM    V  +  T   ++  Y K  +      L   +  R++KPD+V
Sbjct: 478 KMLSEA--DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVV 535

Query: 420 TIGILYDARRIGFDGTGALEMW 441
           T   L D    G +     E+W
Sbjct: 536 TYNTLIDGFCKGSEMEKVNELW 557



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +  ++ +V ++W ++   RI  N  +   +I   C  G + EA R + EM     + ++ 
Sbjct: 546 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 605

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N+I+ GY + G   +A  FL+ M    + P   TY+ LI  + K +  D     +  M
Sbjct: 606 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 665

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
           +  G  PD ITYN+++  F+  G ++  E     M+ + ++   ST  ++++ ++
Sbjct: 666 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 720



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 122 IPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK---PSLEI 176
           + + F +W   +EK           I+   C  G    AV+A + +    LK   P    
Sbjct: 585 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG---NAVKADEFLSNMLLKGIVPDGIT 641

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++I+G+ K    + A   +N+M+   L P   TY+ ++  + +     E ++ +  M 
Sbjct: 642 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 701

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             G +PD  TY  LI        LK     +  ML +
Sbjct: 702 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 738



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + E   AF+ ++   L  S+   NS++ G  K+G  + A     E+    +     T + 
Sbjct: 200 LREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNI 259

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I A  K +  +     L  M+  G  PD +TYN LI  +   GLL+       SM  K 
Sbjct: 260 MINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKG 319

Query: 275 MHLRSSTMVAILDA------YMNF-GMLDKMEKF 301
           +     T  AI++       Y+   G+LD+M K 
Sbjct: 320 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 353


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 7/260 (2%)

Query: 118 RSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS ++ +  ++ +++E+   R    +   +I   CE+GL+  A++    M    L+P++ 
Sbjct: 250 RSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVV 309

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +N++IHG+ +  K  EA     EMK +NL P + TY+ LI  Y +   ++      + M
Sbjct: 310 TFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDM 369

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G   D +TYN LI         ++     K +  + +   SST  A++         
Sbjct: 370 VCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNA 429

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           D+  + YK ++ S     E     L   + KN  F    D    +   + R  +    R 
Sbjct: 430 DRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDF----DGAAQVLREMVRRSIPLDSRT 485

Query: 356 LSHAC-LLSHRGIDSVVREM 374
           +   C  L+H+G D +V+E+
Sbjct: 486 VHQVCNGLNHQGKDQLVKEL 505



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 25/286 (8%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L  +G ++ A+R ++EM    + P+    N ++ GY + GK ++ +  L +M+ +     
Sbjct: 213 LLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRAT 272

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y+ LI  + +  +         MM  +G  P+ +T+N LI  F  A  L+     + 
Sbjct: 273 HVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFG 332

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY---------KRLLNSRTPL----KED 315
            M    +   + T   +++ Y   G  +   +FY         + +L   T +    K+ 
Sbjct: 333 EMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQA 392

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
             RK A+ ++K      L       ++ I    +  C+R        + RG + + + M 
Sbjct: 393 KTRKAAQ-FVKELDKENLVPNSSTFSALI----MGQCVR------RNADRGFE-LYKSMI 440

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            +    N  T NI++ A+ K +DF     +L E+  R +  D  T+
Sbjct: 441 RSGCHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTV 486



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M+ +   P++E  N+ +      G+ + AL F  EM+   +SP + T + ++ 
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMS 246

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            Y +    D+    L+ M+  G    H++YN LI      GLL
Sbjct: 247 GYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLL 289


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 148/346 (42%), Gaps = 18/346 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEM 203
           +I    + G ++EA++ FQ+M+ +  KP+   YN++I G+  +G+  E++  L  M ++ 
Sbjct: 136 MINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDE 195

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N+ P   TY+ LIQA+   K  +E    L  M   G  PD +TYN + + +A  G  ++ 
Sbjct: 196 NVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKA 255

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E     M   ++     T   I+  Y   G + +  +F  R+          +   L + 
Sbjct: 256 ERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKG 315

Query: 324 YIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
           Y+     + +D+   L ++   +         +   S A L+ +   + +  +M  A + 
Sbjct: 316 YLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDN--CEEIFNDMVKAGIE 373

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            ++   +I+   Y++    +    LL+ +    V+ ++V    +      G+   G ++ 
Sbjct: 374 PDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIIS----GWCAAGKMD- 428

Query: 441 WKRIGFLFKTVEINTDP------LVLAVYGKGHFLRYCEEVYSSLE 480
            +      K  E+ T P       ++  YG+       EE+ S++E
Sbjct: 429 -RAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTME 473



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 151/365 (41%), Gaps = 10/365 (2%)

Query: 77  LNALIQRLNK--KVSCPLQILQHDGDW----TKDHFWAVIRFLKNSSRSRQIPQVFDMWK 130
           LNA+I   +   KV   ++I Q   ++    T   +  +I+      R  +  ++ +M  
Sbjct: 133 LNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMG 192

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
             E  + N+     +I   C +  +EEA     +M    ++P +  YN++   Y++ G+ 
Sbjct: 193 QDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET 252

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +A   + +M+   + P   T   +I  Y K     E    L  MK  G  P+ + +N L
Sbjct: 253 EKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSL 312

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I+ +  A     ++     M    +     T   I++A+ + G++D  E+ +  ++ +  
Sbjct: 313 IKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGI 372

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGID 368
                    LA+ Y++     + + L   ++    +T +V    ++S  C      R   
Sbjct: 373 EPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAF- 431

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA- 427
           S+  +M       N+ T   ++  Y + K       +LS +  R V P++ T+ ++ DA 
Sbjct: 432 SLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAW 491

Query: 428 RRIGF 432
           R IG 
Sbjct: 492 RAIGL 496



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 111/264 (42%), Gaps = 14/264 (5%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDE 227
            +KP   + N++I+ +S  GK +EA+    +MKE    P + TY+ LI+ +G   + Y+ 
Sbjct: 125 GMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYES 184

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           + +   M + +   P+  TYN+LIQ +     L+        M+   +     T   +  
Sbjct: 185 MKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 244

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-------RLDDLGDDL 340
           AY   G  +K E+   ++  ++    E     +   Y K    +       R+ +LG   
Sbjct: 245 AYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELG--- 301

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              +    +V+   +  +       G+D  +  ME   ++ +V T + I+ A+       
Sbjct: 302 ---VHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMD 358

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
           +   + +++    ++PDI    IL
Sbjct: 359 NCEEIFNDMVKAGIEPDIHAYSIL 382



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G   +A      M  + ++ ++ I+ +II G+   GK + A     +M EM  SP   TY
Sbjct: 390 GQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTY 449

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           + LI  YG+ K   + +  L  M+  G  P+  T  L+   +   GL K
Sbjct: 450 ETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFK 498



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/365 (19%), Positives = 146/365 (40%), Gaps = 24/365 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  L  +G   EA   F  +     KP+L  Y +++   ++  +F      L+++ + 
Sbjct: 65  KLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADN 124

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P S   + +I A+      DE     + MK  GC P   TYN LI+ F   G++ R 
Sbjct: 125 GMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF---GIVGRP 181

Query: 264 EGTYK--SMLTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
             + K   M+ +  +++ +  T   ++ A+     L++      +++ S   ++ D+V  
Sbjct: 182 YESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASG--IQPDVVTY 239

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
             +A  Y +N    + + L   +     +     C  ++S  C      +   +R    M
Sbjct: 240 NTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYC--KEGNMTEALRFLYRM 297

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +   V  N    N ++  YL   D   +   L+ +    +KPD+VT   + +A    +  
Sbjct: 298 KELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNA----WSS 353

Query: 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF----LRYCEEVYSSLEPYSREKKRWT 490
            G ++  + I        I  D    ++  KG+      R  E + +S+  Y  +     
Sbjct: 354 AGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVI 413

Query: 491 YQNLI 495
           +  +I
Sbjct: 414 FTTII 418



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+      GLM+     F +M    ++P +  Y+ +  GY + G+  +A   L  M +  
Sbjct: 347 IMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYG 406

Query: 205 LSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +      +  +I  +    KM     +C KM ++ G SP+  TY  LI  +  A    + 
Sbjct: 407 VQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM-GTSPNLKTYETLIWGYGEAKQPWKA 465

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           E    +M  + +    STM  + DA+   G+     K   R+LN 
Sbjct: 466 EEILSTMEERGVVPEMSTMQLVADAWRAIGLF----KEANRILNG 506


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 150/377 (39%), Gaps = 47/377 (12%)

Query: 128  MWKNIEKSR-----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +WK IEK +      N +    IIG+LC    + EA  AF EM G  + P   +Y +++ 
Sbjct: 723  VWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVD 782

Query: 183  GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            G+ K G    A  F  EM   +++P   TY  +I  + +     E       M   G  P
Sbjct: 783  GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEP 842

Query: 243  DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            D IT+  L+  +  AG +K     +  M+         T   ++D     G LD      
Sbjct: 843  DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS----- 897

Query: 303  KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                        +L+ ++ ++ ++  +F+  + + + L       E V            
Sbjct: 898  ----------ANELLHEMWKIGLQPNIFT-YNSIVNGLCKSGNIEEAV------------ 934

Query: 363  SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                   +V E E+A +  +  T   ++ AY K  +    + +L+E+  + ++P IVT  
Sbjct: 935  ------KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFN 988

Query: 423  ILYDARRIGFDGTGALEMWKRI--GFLFKTVEINTDPL--VLAVYGKGHFLRYCEEVYSS 478
            +L +    GF   G LE  +++    L K +  N      ++  Y   + L+    +Y  
Sbjct: 989  VLMN----GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKD 1044

Query: 479  LEPYSREKKRWTYQNLI 495
            +     E    TY+NL+
Sbjct: 1045 MCSRGVEPDGKTYENLV 1061



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 127  DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
            +MWK   +  I  +NS  I+  LC+ G +EEAV+   E E   L      Y +++  Y K
Sbjct: 904  EMWKIGLQPNIFTYNS--IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 961

Query: 187  IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             G+ ++A   L EM    L P   T++ L+  +  + M ++ +  L  M   G +P+  T
Sbjct: 962  SGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1021

Query: 247  YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            +N L++++     LK     YK M ++ +     T   ++  + N
Sbjct: 1022 FNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCN 1066



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 5/263 (1%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            C+ G +++A R    M      P++  Y ++I G  K G  + A   L+EM ++ L P  
Sbjct: 855  CKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 914

Query: 210  DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             TY+ ++    K    +E    +   +  G + D +TY  L+  +  +G + + +     
Sbjct: 915  FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTE 974

Query: 270  MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
            ML K +     T   +++ +   GML+  EK    +L             L + Y     
Sbjct: 975  MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNN 1034

Query: 330  FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTA 386
                  +  D+ SR    +      L+   C  + R +     + +EM+      +V+T 
Sbjct: 1035 LKAATAIYKDMCSRGVEPDGKTYENLVKGHC--NARNMKEAWFLFQEMKGKGFSVSVSTY 1092

Query: 387  NIILLAYLKMKDFKHLRVLLSEL 409
            ++++  + K K F   R +  ++
Sbjct: 1093 SVLIKGFFKRKKFVEAREIFDQM 1115



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 126/313 (40%), Gaps = 31/313 (9%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGL 215
           A+  F+E     +  ++  YN +IH   ++G+ NEA  LL L E+K    +P   +Y  +
Sbjct: 653 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELK--GYTPDVISYSTV 710

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  Y ++   D++   ++ MK  G  P+  TY  +I        L   E  +  M+ + +
Sbjct: 711 INGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGI 770

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNYMFSRL 333
              +     ++D +   G +    KF+   ++SR  TP          +V     + S  
Sbjct: 771 LPDTIVYTTLVDGFCKRGDIRAASKFFYE-MHSRDITP----------DVLTYTAIISGF 819

Query: 334 DDLGD---------DLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
             +GD         ++  R    +++    L++  C   H +    V   M  A    NV
Sbjct: 820 CQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNV 879

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T   ++    K  D      LL E+    ++P+I T    Y++   G   +G +E   +
Sbjct: 880 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT----YNSIVNGLCKSGNIEEAVK 935

Query: 444 IGFLFKTVEINTD 456
           +   F+   +N D
Sbjct: 936 LVGEFEAAGLNAD 948



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 44/106 (41%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++   C    ++ A   +++M    ++P  + Y +++ G+       EA     EMK   
Sbjct: 1025 LVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKG 1084

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             S    TY  LI+ + K K + E       M+ DG + D   ++  
Sbjct: 1085 FSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFF 1130



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            C    M+EA   FQEM+G     S+  Y+ +I G+ K  KF EA    ++M+   L+   
Sbjct: 1065 CNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADK 1124

Query: 210  DTYDGLIQAYGKYKMYDEI 228
            + +D       K K  D I
Sbjct: 1125 EIFDFFSDTKYKGKRPDTI 1143


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 143/345 (41%), Gaps = 45/345 (13%)

Query: 124 QVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNS 179
           Q   +++N+E SR+         +I  LC+ G +E+A    +EM  +G    P +  YN+
Sbjct: 115 QAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNT 174

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+ + +  +  EA  F  +MK   ++P   T + L+    K    +E    L  MKL G
Sbjct: 175 LINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-- 297
             PD ITYN +I     AG +       K+M      +  +T+   LD +   GML +  
Sbjct: 235 PVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTL---LDGFCKAGMLPRAL 291

Query: 298 --MEKF-----------YKRLLNSRTP---------LKEDLVRK-----------LAEVY 324
             +E+            Y  L+N             L E++VR+           L +  
Sbjct: 292 EVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 351

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWN 382
            K+        L  +++ R  RT +V    L+S  C     H+  + ++ EM S  +   
Sbjct: 352 CKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKARE-ILAEMVSINMVPP 410

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + T NI+L   +K         L+S+L  R   PD+VT   L D 
Sbjct: 411 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDG 455



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 2/180 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            +K+ S S+ +  + D+        +  +N+  +I  LC+   + EA     EM      
Sbjct: 421 LIKDGSISKAVSLISDLVARGYVPDVVTYNT--LIDGLCKANRVREACDLADEMASRGCF 478

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+     S++ G  ++G+ ++A   + EM     +P    Y  LI    K    D+  M 
Sbjct: 479 PNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMV 538

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L  M+  G + D   Y  LI   +  G +      Y  M+ +      ST   + +A M+
Sbjct: 539 LDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMS 598



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G    A+   + ++ F++ P + I+N +IHG  K G  ++A+     M+   + P+ 
Sbjct: 73  CKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEI 132

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEF 254
            TY+ +I    K    ++    L+ M   G   +PD +TYN LI  F
Sbjct: 133 VTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAF 179



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 68/152 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G +EEA +  +EM     +  + +Y+S++ GY + G  ++A   L EM  +N
Sbjct: 347 LVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++    K     +    +  +   G  PD +TYN LI     A  ++   
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 466

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
                M ++       T+ +++      G +D
Sbjct: 467 DLADEMASRGCFPNDVTLGSVVFGLCRVGRVD 498



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 73/195 (37%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G++  A+   +EM    + P +  Y  +++G  ++G+   A   L E+      P 
Sbjct: 281 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 340

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  L+    K    +E    +K M + GC    + Y+ L+  +  AG + +      
Sbjct: 341 VIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILA 400

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M++  M     T   +L   +  G + K       L+             L +   K  
Sbjct: 401 EMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKAN 460

Query: 329 MFSRLDDLGDDLASR 343
                 DL D++ASR
Sbjct: 461 RVREACDLADEMASR 475


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS       D+ + +E+  +  + F    II  LC +G ++ A+  F+EME   +K S+ 
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++ G  K GK+N+  L L +M    + P   T++ L+  + K     E +   K M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ ITYN L+  +     L         M+  +      T  +++  Y     +
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 384

Query: 296 DKMEKFYKRL 305
           D   K ++ +
Sbjct: 385 DDGMKVFRNI 394



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 9/291 (3%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG + EAV     M     +P +  YNSI++G  + G  + AL  L +M+E N+     T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I +  +    D      K M+  G     +TYN L++    AG         K M+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           ++ +     T   +LD ++  G L +  + YK ++             L + Y      S
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANI 388
             +++ D +       ++V    L+   C++    +D    V R +    +  N  T +I
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR--VDDGMKVFRNISKRGLVANAVTYSI 408

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           ++  + +    K    L  E+ +  V PD++T GIL D    G    G LE
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD----GLCDNGKLE 455



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F++++   +   + +Y +II G  K GK  +A      +    + P 
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  +I    K     E ++ L+ M+ DG +P+  TYN LI+
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  +++++++KS+++        II  +C+ G +E+A   F  +    +KP++  Y 
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
            +I G  K G  +EA + L +M+E   +P   TY+ LI+A+
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 113/323 (34%), Gaps = 79/323 (24%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           RF    +R++Q   V D  K +E + I  N +    +I   C       A     ++   
Sbjct: 93  RFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKL 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    +N++I G    GK +EA++ ++ M E                          
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE-------------------------- 186

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                    +GC PD +TYN ++     +G         + M  + +     T   I+D+
Sbjct: 187 ---------NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 289 YMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
               G +D     +K +    + S       LVR L                      + 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC---------------------KA 276

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           G+    W     +   LL        +++M S ++  NV T N++L  ++K    +    
Sbjct: 277 GK----W-----NDGALL--------LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           L  E+ TR + P+I+T   L D 
Sbjct: 320 LYKEMITRGISPNIITYNTLMDG 342


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 142/315 (45%), Gaps = 7/315 (2%)

Query: 118 RSRQIPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++++ +  D+++  +EK  + N      II  LC+   ++ A   FQ+M    +KPS  
Sbjct: 237 KAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNV 296

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN+II G  K    + A     +M +  + P   TY+ +I    K +  D+ +   + M
Sbjct: 297 TYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM 356

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G  PD++TY ++I     A  + R EG ++ M+ K +   + T   ++  Y++ G  
Sbjct: 357 IDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQW 416

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWC 352
           +++ +  K +  S   L+ D+     L +   KN   +    L D +  + I  +  ++ 
Sbjct: 417 EEVVQRIKEM--SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYG 474

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           + L  +    +   +  ++  M +  +  N    N ++ AY K      +  +  ++  +
Sbjct: 475 IMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQ 534

Query: 413 HVKPDIVTIGILYDA 427
            + P++VT G L DA
Sbjct: 535 GLSPNVVTYGTLIDA 549



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 153/362 (42%), Gaps = 49/362 (13%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           L ++    +A++ L++++  +V C L ++ ++          +++ L +  R+ +  ++ 
Sbjct: 129 LCDTKRVGEAMHVLLRQM-PEVGCRLGVVSYN---------TLLKGLCDRRRAEEARELL 178

Query: 127 DMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
            M  + + S  +    +   +I     EG +++A   F EM    + P +  YN+II G 
Sbjct: 179 HMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGL 235

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K  + + A     +M E  + P + TY+ +I    K +  D  +   + M   G  P +
Sbjct: 236 CKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSN 295

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN +I     A  + R EG ++ M+ + +     T   I+D       +DK E  +++
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           +++    +K D           N  ++ + D G   A  + R E                
Sbjct: 356 MIDK--GVKPD-----------NLTYTIIID-GLCKAQSVDRAE---------------- 385

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                V ++M    V+ N  T N ++  YL    ++ +   + E+    ++PD+ T G+L
Sbjct: 386 ----GVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLL 441

Query: 425 YD 426
            D
Sbjct: 442 LD 443



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 9/277 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA   F  M    +KPS+ IY  ++HGY K G  +E    LN M    +SP 
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              ++ +I AY K  M DE+      MK  G SP+ +TY  LI      G +      + 
Sbjct: 505 HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFN 564

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M+ + +   +    +++         +K+E+ +  +LN    ++ D+V    +     K
Sbjct: 565 QMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQ--GIRPDIVFFNTVLCNLCK 622

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNV 383
                    L D +     + +++    L+   C  S   +D  V+    M SA ++ N+
Sbjct: 623 EGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASR--MDEAVKLLDGMVSAGLKPNI 680

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            + N +L  Y K     +   L  E+  + V P + T
Sbjct: 681 VSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVET 717



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 118/277 (42%), Gaps = 9/277 (3%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EE V+  +EM    L+P +  Y  ++    K GK NEA    + M    + P    Y
Sbjct: 414 GQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIY 473

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             ++  YGK     E+   L +M  +G SP+H  +N +I  +A   ++  +   +  M  
Sbjct: 474 GIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQ 533

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T   ++DA    G +D     + +++N        +   L         + +
Sbjct: 534 QGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEK 593

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVTTAN 387
           +++L  ++ ++  R ++V+   +L + C     + + R IDS+V       ++ +V + N
Sbjct: 594 VEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMV----CMGLKPDVISYN 649

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++  +           LL  + +  +KP+IV+   L
Sbjct: 650 TLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTL 686



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 121/302 (40%), Gaps = 36/302 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI----YNSIIHGYSKIGKFNEAL-LFLNE 199
           +IG  C  G +E    AF    G  LK    +     N ++ G     +  EA+ + L +
Sbjct: 90  VIGCFCRIGRLELGFAAF----GLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQ 145

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG----CSPDHITYNLLIQEFA 255
           M E+       +Y+ L++     +  +E    L MM +DG    CSPD ++YN++I  F 
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMM-VDGQDSSCSPDVVSYNIVINGFF 204

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE- 314
             G   +++  Y   L   +     T   I+D       +D+ E  +++++         
Sbjct: 205 NEG---QVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV 261

Query: 315 ------DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
                 D + K  EV +   +F ++ D G   ++    T       ++   C    + +D
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT-------IIDGLC--KAQAVD 312

Query: 369 ---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
               V ++M    V+ +  T N I+    K +       +  ++  + VKPD +T  I+ 
Sbjct: 313 RAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIII 372

Query: 426 DA 427
           D 
Sbjct: 373 DG 374



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           RS +  +  +++ N+ KSR    I  ++   I+   C+    +EA + FQ +    L+  
Sbjct: 727 RSGRFSEARELYVNMIKSRKLWSICTYSI--ILDGFCKNNCFDEAFKIFQSLCSMDLQLD 784

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  +N +I G  K G+  +A+     +    L P   TY  + +   +    +E+D    
Sbjct: 785 IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFS 844

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAY 289
           +M+  G +P+    N LI++    G + R  G Y S L  K   L +ST   ++  +
Sbjct: 845 VMEKSGTAPNSHMLNALIRKLLDRGEIPR-AGAYLSKLDEKNFSLEASTTSMLISLF 900


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N   S  ++  LCE G MEE     ++M    L      YN++I G  K GK  EA    
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +    P + TY+ L++        D++   L   K  G  P+  TY LL++ +  A
Sbjct: 560 EEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKA 619

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++     +K++  +++ L S     ++ AY   G + +  K  +  + SR  L     
Sbjct: 620 DRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKL-RDAMKSRGILPT--C 676

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLAS--RIGRTELVWC-LRLLSHACLLSHRGI-DSVVRE 373
              + +        R+D+  +        G    V+C   L+   C L    I  S++ E
Sbjct: 677 ATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLE 736

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           M S  +R N  T  I++  Y K+ + K  R LL+E+    + PD VT    Y+A + G+
Sbjct: 737 MSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVT----YNALQKGY 791



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 2/193 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VFD+    +    + F     I   C+ G + +AV  F +MEG  + P++  YN++I G
Sbjct: 242 EVFDLA--CQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDG 299

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             K G+F EAL F + M    ++P   TY  LI    K +M++E +  L  M   G +P+
Sbjct: 300 LFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPN 359

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            + +N LI  +   G +         M  K M     T   +L  +     +++ E+   
Sbjct: 360 EVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLV 419

Query: 304 RLLNSRTPLKEDL 316
            +L+S   +  D+
Sbjct: 420 YILSSGLSVNMDV 432



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 2/180 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+   ++ +I      +KN+  EK  ++      +I   C  G + EA +    M+   
Sbjct: 612 LLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRG 671

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P+   Y+S+IHG   IG+ +EA     EM+   L P    Y  LI  + K    D + 
Sbjct: 672 ILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVG 731

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  M  +G  P+ ITY ++I  +   G +K        M+   +   + T  A+   Y
Sbjct: 732 SILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGY 791



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 110/291 (37%), Gaps = 6/291 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L + G  EEA+R    M    + PS+  Y  +I G  K+  F EA   L
Sbjct: 289 NVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVL 348

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM  M  +P    ++ LI  Y +     E       M + G  P+ +T+N L+Q F  +
Sbjct: 349 VEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRS 408

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             +++ E     +L+  + +       ++   M         K   +LL+    + + L+
Sbjct: 409 NQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLL 468

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVRE 373
             L     K    S   +L   LA+  G          L H   L  RG    +  V+++
Sbjct: 469 TPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHG--LCERGNMEEVFEVLKQ 526

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           M    +  +  + N ++    K    +    L  E+  +  +PD  T   L
Sbjct: 527 MLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFL 577



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  +  ++F+  +N E    N F    +IG  C+ G M+       EM    ++P+   
Sbjct: 690 GRVDEAKEIFEEMRN-EGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKIT 748

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM-M 235
           Y  +I GY K+G   EA   LNEM    ++P + TY+ L + Y K +   E+ + L+   
Sbjct: 749 YTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKER---ELTVTLQSDH 805

Query: 236 KLDGCSP--DHITYNLLIQEF 254
           K +   P  + ITYN LI + 
Sbjct: 806 KSNIGLPLEEEITYNTLIHKL 826


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 51/319 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II +L  EGL+E++   F+EM    +  S+  Y ++I+ Y + G++  +L  L  MK+  
Sbjct: 148 IISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEK 207

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           ++P   TY+ +I +  +  + ++ +      M+ +G  PD ITYN L+   A  GL    
Sbjct: 208 VTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEA 267

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           E  +++M           MV  +  Y N    FG L+K+EK  + L    +         
Sbjct: 268 EMVFRTM-------NEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESS------GN 314

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           L ++   N +       GD                 + HA          V R+M+ A+ 
Sbjct: 315 LPDISSYNVLLEAYASKGD-----------------IRHAM--------GVFRQMQEARC 349

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             N  T +++L  Y     +  +R L  E+   + +PD+ T  +L     I   G G   
Sbjct: 350 VPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVL-----IEVFGEGGY- 403

Query: 440 MWKRIGFLF-KTVEINTDP 457
            +K +  LF   VE N +P
Sbjct: 404 -FKEVVTLFHDMVEENVEP 421



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL E+A +    M+   + PS + Y  +I  Y +   + EAL+  N M EM   P  +TY
Sbjct: 437 GLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETY 496

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI  + +  +Y E +  +  M   G + D  ++N +I+ +   G  +    TY  +  
Sbjct: 497 NSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEK 556

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            R      T  A+L  Y   G++D+ E+ ++ +  S
Sbjct: 557 ARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRAS 592



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 5/238 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P++  Y  +I+   K G   +A   L  M E  
Sbjct: 394 LIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKG 453

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P +  Y G+I+AYG+   Y+E  +    M   G  P   TYN LI  FA  GL K  E
Sbjct: 454 IVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESE 513

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +     +   +++ Y   G  ++  K Y  L  +R    E     +  VY
Sbjct: 514 AIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVY 573

Query: 325 IKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKV 379
               +    ++   ++ AS I  + + +C+ +  +A   S+R  D+  V+ EM + KV
Sbjct: 574 CTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYA--RSNRWDDAYEVLDEMVTNKV 629



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 8/299 (2%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           G L  EGL+      F EM    ++P +  YN++++  +  G  +EA +    M E  + 
Sbjct: 225 GGLNWEGLLS----LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMV 280

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P   TY  L++ +GK    +++   LK M+  G  PD  +YN+L++ +A  G ++   G 
Sbjct: 281 PDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGV 340

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           ++ M   R    + T   +L+ Y   G  D + + +  +  S T         L EV+ +
Sbjct: 341 FRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGE 400

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVT 384
              F  +  L  D+        +      L +AC     H     ++  M+   +  +  
Sbjct: 401 GGYFKEVVTLFHDMVEENVEPNM-GTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTK 459

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWK 442
               ++ AY +   ++   V+ + +     KP + T   L +   R G        MWK
Sbjct: 460 AYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWK 518



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVR 160
           +D F  VI   +      Q  +    +  +EK+R   +E   + ++ + C  GL++E+  
Sbjct: 528 RDSFNGVIEGYRQGG---QFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEE 584

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-Y 219
            F+E+    + PS+  Y  +I  Y++  ++++A   L+EM    +S        +++  Y
Sbjct: 585 QFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMKGDY 644

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             Y  +  ++     +  +GC      YN L++     G  +R
Sbjct: 645 DDYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKER 687


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 11/139 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F+ M    +KP++  YN++I+GY   GK +EA+  L+ 
Sbjct: 479 FNS--IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M  + L P + TY  LI  Y K    ++  +  K M+  G SPD ITYN+++Q     GL
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GL 591

Query: 260 LKRMEGTYKSMLTKRMHLR 278
            +    T ++   K +++R
Sbjct: 592 FQ----TRRTAAAKELYVR 606



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 158/392 (40%), Gaps = 79/392 (20%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS----------------------- 185
           LC+ G   EA + F  M    LKP +  Y +++ GY+                       
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 186 ------------KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
                       K GK ++A+L  ++M++  L+P + TY  +I    K    ++  +  +
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M  +G SP +I YN LI         +R E     ML + + L +    +I+D++   G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRTELVWC 352
            + + EK ++ ++  R  +K +++       I  Y  + ++D+                 
Sbjct: 491 RVIESEKLFELMV--RIGVKPNVITY--NTLINGYCLAGKMDE----------------A 530

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           ++LLS                M S  ++ N  T + ++  Y K+   +   VL  E+ + 
Sbjct: 531 MKLLSG---------------MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575

Query: 413 HVKPDIVTIGI----LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
            V PDI+T  I    L+  RR       A E++ RI      +E++T  ++L    K   
Sbjct: 576 GVSPDIITYNIILQGLFQTRRT----AAAKELYVRITESGTQIELSTYNIILHGLCKNKL 631

Query: 469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
                +++ +L     + +  T+  +ID ++K
Sbjct: 632 TDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  II  LC+   M++A+     M    + P    YNSI+HGY   G+  EA+ FL +
Sbjct: 234 YNS--IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   + P   TY  L+    K     E       M   G  P+  TY  L+Q +A  G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +IG+LC+ G +E+A+  F++M    L P   +YNS+IHG     K+  A   +
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  +   +  ++ +I ++ K     E +   ++M   G  P+ ITYN LI  +  A
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           G +         M++  +   + T   +++ Y     ++     +K + +S
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG  ++A   + EM    + P +  YNSII    K    ++A+  LN M +  
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M+ DG  PD +TY+LL+      G      
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           N F+   ++  LC+E   +EA+     M    G    P +  Y ++I+G+ K G  ++A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              +EM +  + P   TY+ +I A  K +  D+    L  M  +G  PD +TYN ++  +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 255 ACAGLLKRMEGTYKSM 270
             +G  K   G  K M
Sbjct: 277 CSSGQPKEAIGFLKKM 292


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+  K+I   + N      ++     EGL E+A   F+EM+    +P +  YN+++  
Sbjct: 444 KVFNEMKSI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 502

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           YS+ G    A    + M+ M   P   +Y+ L+ AYG+  ++++ +   + +K  G SP 
Sbjct: 503 YSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPT 562

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             ++ LL+   A +G   R E     +    +   +  + A+L+AY   G LD ME+   
Sbjct: 563 MKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLA 622

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLL 362
             +  R              Y +     R++     +A+R    ++V W  R+ ++A   
Sbjct: 623 -AMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRK 681

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            +     +V EM  A    +  TA ++L A     D + +  + + + + H KP
Sbjct: 682 EYGRCVGMVEEMVDAGCYPDAGTARVLLAA---CSDERQVEQVTAIVRSMHKKP 732



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 118/277 (42%), Gaps = 14/277 (5%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +++ F EM+    KP++  Y ++++ +++ G   +A     EM++    P    Y+ L++
Sbjct: 442 SMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALME 501

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY +  +         +M+  GC PD  +YN+L+  +  AGL +  E  ++ +  + M  
Sbjct: 502 AYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSP 561

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              + + +L A+   G   + E+   +L  S        +  +   Y +     RLDD+ 
Sbjct: 562 TMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA---GRLDDME 618

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME-------SAKVRWNVTTANIIL 390
             LA+   R +      + ++   ++  G    V  ME       +  +  +V T    +
Sbjct: 619 RLLAAMERRGD----ADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARM 674

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            AY + K++     ++ E+      PD  T  +L  A
Sbjct: 675 GAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAA 711



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 112/287 (39%), Gaps = 3/287 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM    + P+  +YN+ + G  K     +A+     MK       +
Sbjct: 364 CNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 423

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +T+  +I  YGK K           MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 424 ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 483

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G+     + +  + +            L + Y +  +
Sbjct: 484 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 543

Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               + + ++L  R +  T     L L +HA   +    + V+ ++  + +  +    N 
Sbjct: 544 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 603

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDG 434
           +L AY +      +  LL+ +  R    D+ T  +  +A  R G+ G
Sbjct: 604 MLNAYARAGRLDDMERLLAAM-ERRGDADVGTYNVAVNAYGRAGYVG 649



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 13/283 (4%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +  P    Y+ LI++YGK +  ++ +     +    C P   TY LL++ +  AG L R 
Sbjct: 313 SFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRA 372

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           EG    M    +   ++   A LD  +     +K  + Y+R+   R     +    +  V
Sbjct: 373 EGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINV 432

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKV 379
           Y K         + +++ S IG    +     L +A   +  G+    + V  EM+ A  
Sbjct: 433 YGKAKQPMSSMKVFNEMKS-IGCKPNICTYTALVNA--FAREGLCEKAEEVFEEMQQAGH 489

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF--DGTG 436
             +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G   D   
Sbjct: 490 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEA 549

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
             E  K+ G    +  + +  L+LA + +      CEEV + L
Sbjct: 550 VFEELKQRGM---SPTMKSHMLLLAAHARSGNATRCEEVMAQL 589



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 118/298 (39%), Gaps = 40/298 (13%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDM----CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           N+    + +D L+    +++M  + D+    C  ++      PD I YNLLI+ +     
Sbjct: 274 NIPSTHNLFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQ 333

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L + E  Y ++L  +      T   +L AY N G L + E          + ++E  +  
Sbjct: 334 LNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI-------SEMREHGIPP 386

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
            A VY      + LD                    LL   C  + + ++ V + M+  + 
Sbjct: 387 NATVY-----NAYLDG-------------------LLKARC--TEKAVE-VYQRMKRERC 419

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGAL 438
           R N  T  +++  Y K K       + +E+ +   KP+I T   L +A  R G     A 
Sbjct: 420 RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL-CEKAE 478

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           E+++ +       ++     ++  Y +    +   E++S ++    E  R +Y  L+D
Sbjct: 479 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD 536



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 49/121 (40%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           + +P +  YN +I  Y K  + N+A      + E    P  DTY  L++AY         
Sbjct: 313 SFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRA 372

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +  +  M+  G  P+   YN  +     A   ++    Y+ M  +R    + T   +++ 
Sbjct: 373 EGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINV 432

Query: 289 Y 289
           Y
Sbjct: 433 Y 433


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/448 (21%), Positives = 181/448 (40%), Gaps = 64/448 (14%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML----CEEGL 154
           G + + +F  +IR +  S   +    VF  W  I++   N      I GM+         
Sbjct: 113 GRFARRNFPLLIREITISGSLKHAVHVF-RWMKIQE---NYCARNDIYGMMIRLHARHNQ 168

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  + YNS+IH +++ G++  A+  +++M+   + P   TY+ 
Sbjct: 169 VDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNN 228

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD IT+N+++  F       +    ++ M + 
Sbjct: 229 VINACGAAGNWKKALELCKKMTE-NGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSS 287

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--------- 324
           ++   + TM  ++   +   +  +  + +  +   RT    D+V   + +Y         
Sbjct: 288 KVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAE 347

Query: 325 -------------IKNYMFSRLDDLGDDLASRIGRTELVWCLRLL----------SHACL 361
                        ++  + S    LG   AS    TE +   +LL          S+  L
Sbjct: 348 NCKAVFDMMVAEGVRPNIVSYNALLG-AYASHGMHTEALETFKLLKQNGFKPDIVSYTSL 406

Query: 362 LSHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           L+  G  +       V  EM     + N  + N ++ AY      K    LL E+    +
Sbjct: 407 LNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGI 466

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVY--GKGHFLRYC 472
           +PD+++I  L  A        G      +IG +    +     L    Y  G G +L   
Sbjct: 467 QPDVISISTLLTA-------CGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLG 519

Query: 473 E-----EVYSSLEPYSREKKRWTYQNLI 495
           +     E+Y+S+   + +    TY  LI
Sbjct: 520 DYKKALELYTSMRTGNVKPDAVTYNILI 547



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
             L E+A   F EM   A KP+   YN++I  Y   G   EA+  L+EM++  + P   +
Sbjct: 413 SALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVIS 472

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
              L+ A G+ +   +I + L   K  G   + + YN  I  +   G  K+    Y SM 
Sbjct: 473 ISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMR 532

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDK 297
           T  +   + T   ++      G   K
Sbjct: 533 TGNVKPDAVTYNILISGSCKLGSFRK 558


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 157 EAVRAF-QEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           E VR +  +M+G    +P++  YN ++  +++ GK ++      ++    +SP   T++G
Sbjct: 189 EKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNG 248

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ AYGK  M  E++  L  M+ + C PD IT+N+LI  +      ++ME T+KS++  +
Sbjct: 249 VMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSK 308

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 T  +++  Y    M+DK E  +K++
Sbjct: 309 EKPTLPTFNSMIINYGKARMIDKAEWVFKKM 339



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 170/411 (41%), Gaps = 41/411 (9%)

Query: 37  AKTLIRKPISCCCLSSAPSLDYHST--KHTTLLVESY----HEHQALNALIQRLNKKVSC 90
           A+   R  I+C  +SS   L    +  +   +LV S      + + L   + +  K V C
Sbjct: 38  ARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRC 97

Query: 91  PLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGML 149
                        DH + +   L  S +  Q  +VF  W   ++  I +     K+I ++
Sbjct: 98  -------------DHCFLLFEELGKSDKWLQCLEVF-RWMQKQRWYIPDNGVYSKLISVM 143

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNEMKEMN- 204
            ++G    A+  F EM+    +P   +YN++I    H   K     +   +L++MK +  
Sbjct: 144 GKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIER 203

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L++A+ +    D+++   K + +   SPD  T+N ++  +   G++K ME
Sbjct: 204 CQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEME 263

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M +        T   ++D+Y      +KME+ +K L+ S    KE          
Sbjct: 264 AVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRS----KEKPTLPTFNSM 319

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVREM-----ES 376
           I NY  +R+ D  + +  ++   ++ +    +++ C++    + G  S  RE+     ES
Sbjct: 320 IINYGKARMIDKAEWVFKKM--NDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGES 377

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +V    +T N +L  Y +   +     L        V PD  T   LY A
Sbjct: 378 DRV-LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 82/177 (46%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + +A+  F+EM+     P +  YN++I  Y + G+   A      M+E   +P + TY+ 
Sbjct: 201 LSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNS 260

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ A+ +    +E++    MM+   CS D ITYN +I  +  AG+ ++ E  Y  M  + 
Sbjct: 261 VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEG 320

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
               S T   ++D     G +++    ++ +L S+          +   Y K  MFS
Sbjct: 321 RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFS 377



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G   +A   F+ M+     P    +N++I  YS+     EA   L EM +  
Sbjct: 816 MISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTG 875

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI AYG+ + Y++ ++  K +   GC PD   YN++I  +  AG  +++E
Sbjct: 876 NAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIE 935

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              + M         +T+  ++D+Y   G   K E+  + L
Sbjct: 936 EVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETL 976



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 2/173 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +    G +E A   F+ M+     P    YNS++H +++ G+  E       M++  
Sbjct: 226 MISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDAR 285

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            S    TY+ +I  YGK  M+ + +     MK +G  PD +T+ +LI     AG +    
Sbjct: 286 CSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAA 345

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++ ML  ++        A++ AY    M    E  Y  +L  R  ++ DL+
Sbjct: 346 AMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCML--RAGVRPDLL 396



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 34/267 (12%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EEA   +++M      PS++++ +++  YS+     +A   + ++K+  L    D Y
Sbjct: 754 GNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIY 813

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  Y K   Y +  +  K M+  GCSPD  T+N LI  ++   +++  +   + M+ 
Sbjct: 814 NHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIK 873

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
                  ST   ++ AY      +  E  +K +  + T  K D     A  Y  N M + 
Sbjct: 874 TGNAPNISTYTTLISAYGRLQAYEDAELVFKSI--AETGCKPD-----ATAY--NVMINV 924

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
               G+                         HR I+ V+ +M++     ++TT ++++ +
Sbjct: 925 YRKAGE-------------------------HRKIEEVIEQMKADGFEPSLTTIHMLMDS 959

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIV 419
           Y K         +L  LP   + PD +
Sbjct: 960 YGKGGATGKAEEVLETLPEIGMSPDAI 986



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 153 GLMEEAVRA--FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           G M+E + +   Q++    L+P    YN++I   S   + ++A+L   EM+     P   
Sbjct: 162 GGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIW 221

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ +I  YG+    +      ++M+  G +PD +TYN ++  FA  G ++ +E     M
Sbjct: 222 TYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMM 281

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              R      T   ++  Y   GM  K E+ Y ++
Sbjct: 282 RDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQM 316



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 140/344 (40%), Gaps = 24/344 (6%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           +  F +K S  ++ +II  Y K+  +  A +   +++    +  +  Y  L+ AY +   
Sbjct: 627 LHAFEVKDS-AMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGN 685

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           ++     L  M   G  P+    N +++ F  AG  K +   Y+ +    +   S T V 
Sbjct: 686 FERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVV 745

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           I  A+   G L++    Y+++  +       + + L  +Y +  +   +D   ++L   I
Sbjct: 746 IFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETV--EID--AEELVKDI 801

Query: 345 GRTELVWCLRLLSHACLL-----SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            +  L   + + +H   L     S+R    V + M+      + TT N +++ Y + +  
Sbjct: 802 KKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMV 861

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV-EINTDP- 457
           +  + LL E+      P+I T   L  A        G L+ ++    +FK++ E    P 
Sbjct: 862 QEAQALLREMIKTGNAPNISTYTTLISA-------YGRLQAYEDAELVFKSIAETGCKPD 914

Query: 458 -----LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
                +++ VY K    R  EEV   ++    E    T   L+D
Sbjct: 915 ATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMD 958



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 112/296 (37%), Gaps = 2/296 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++    E G  E A RA   M    L+P+    N ++  + + GK  E   F   + EM 
Sbjct: 676 LLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMG 735

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P S T+  +  A+ +    +E     + M+  G SP    +  L+  ++   +    E
Sbjct: 736 ITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAE 795

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K +    + L       ++  Y   G   K    +K +              L  +Y
Sbjct: 796 ELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLY 855

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNV 383
            +N M      L  ++        +     L+S +  L ++   + V + +     + + 
Sbjct: 856 SRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDA 915

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           T  N+++  Y K  + + +  ++ ++     +P + TI +L D+   G   TG  E
Sbjct: 916 TAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKG-GATGKAE 970



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I +     +++EA    +EM      P++  Y ++I  Y ++  + +A L    
Sbjct: 848 FNT--LIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKS 905

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           + E    P +  Y+ +I  Y K   + +I+  ++ MK DG  P   T ++L+  +   G 
Sbjct: 906 IAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGA 965

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
             + E   +++    M   +    +I+++++N
Sbjct: 966 TGKAEEVLETLPEIGMSPDAIHYTSIINSHLN 997



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/349 (18%), Positives = 138/349 (39%), Gaps = 11/349 (3%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L + A   F++++      +   Y++++  Y++ G F  A   L+ M    L P +   +
Sbjct: 650 LWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACAN 709

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            +++A+G+     E+    + +   G +P+  T+ ++   F+  G L+     Y+ M   
Sbjct: 710 YVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREA 769

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK--NYMFS 331
                     A+L  Y    +    E+  K +  +   L  D+   +  +Y K  +Y  +
Sbjct: 770 GFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKA 829

Query: 332 RLDDLG-DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
            L   G  ++      T     + L S   ++      +++REM       N++T   ++
Sbjct: 830 ALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQE--AQALLREMIKTGNAPNISTYTTLI 887

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG---TGALEMWKRIGFL 447
            AY +++ ++   ++   +     KPD     ++ +  R   +       +E  K  GF 
Sbjct: 888 SAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGF- 946

Query: 448 FKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
                + T  +++  YGKG      EEV  +L           Y ++I+
Sbjct: 947 --EPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIIN 993



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 125/325 (38%), Gaps = 53/325 (16%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           ++G   + GL +E    F   E  ++   +++YNS++  Y++ G +N     L  M++  
Sbjct: 89  VLGRANQPGLAQEL---FDRAES-SIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRG 144

Query: 203 ----------------------------------MNLSPQSDTYDGLIQAYGKYKMYDEI 228
                                               L P + TY+ LI A        + 
Sbjct: 145 CRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDA 204

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            +  + M+  GC PD  TYN +I  +  AG ++     ++ M  +     + T  ++L A
Sbjct: 205 ILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHA 264

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           +   G ++++E+    + ++R    E     +  +Y K  M  + ++L   +    GR  
Sbjct: 265 FARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEE-GR-- 321

Query: 349 LVWCLRLLSHACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLKMKDFKH 401
              C   ++   L+   G    V E       M  ++VR  +   + ++ AY K   F  
Sbjct: 322 ---CPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSD 378

Query: 402 LRVLLSELPTRHVKPDIVTIGILYD 426
                S +    V+PD++   ++ D
Sbjct: 379 AEHTYSCMLRAGVRPDLLAYSVMLD 403



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 86  KKVSCPLQILQHDGDWTKDH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
           +  S   +I+Q  G +T D   + +V+       R  ++ ++  M ++   S  +E    
Sbjct: 237 EAASSIFRIMQEQG-FTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS-DEITYN 294

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            +I M  + G+  +A   + +M+     P    +  +I    K G  NEA     +M + 
Sbjct: 295 TMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 354

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P    +  +I AY K  M+ + +     M   G  PD + Y++++  F  A + ++ 
Sbjct: 355 QVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKC 414

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              YK+M+   +    S    ++  +     L ++E   K ++ 
Sbjct: 415 IILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEMVQ 458



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 6/203 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  ++     +G +EE  R    M           YN++IH Y K G   +A     +
Sbjct: 258 YNS--VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQ 315

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MKE    P S T+  LI   GK    +E     + M      P    ++ +I  +A A +
Sbjct: 316 MKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADM 375

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
               E TY  ML  R  +R   +    +LD +    M +K    YK ++ S    +  + 
Sbjct: 376 FSDAEHTYSCML--RAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVY 433

Query: 318 RKLAEVYIKNYMFSRLDDLGDDL 340
             +  V+ +    + +++L  ++
Sbjct: 434 AIMVRVFYQKSSLAEIENLSKEM 456


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 3/203 (1%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAF 162
           + +  + + L      RQ P  F + K  +   + N ++   +I  L + G  +EA++ +
Sbjct: 158 NTYLTIFKALSIKGGIRQAP--FALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVY 215

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M    LKPS++ Y++++    +       +  L EM+ + L P   TY   I+  G+ 
Sbjct: 216 KRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRA 275

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
              D+    LK M+ +GC PD +TY +LI     AG L + +  Y  M          T 
Sbjct: 276 GRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTY 335

Query: 283 VAILDAYMNFGMLDKMEKFYKRL 305
           + ++  + N+G L+ +++F+  +
Sbjct: 336 ITLMSKFGNYGDLETVKRFWSEM 358



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 2/190 (1%)

Query: 118  RSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            +S  I +  D++  I     +        +IG L + G  EEA++ F+EM  +  KP+  
Sbjct: 870  KSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCA 929

Query: 176  IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            IYN +I+G+ K G  N A      M +  + P   +Y  L++        D+     + +
Sbjct: 930  IYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEEL 989

Query: 236  KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            KL G  PD ++YNL+I     +  L+     +  M  + +     T  A++  + N GM+
Sbjct: 990  KLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMV 1049

Query: 296  DKMEKFYKRL 305
            D+  K ++ L
Sbjct: 1050 DQAGKMFEEL 1059



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 139/324 (42%), Gaps = 45/324 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G ++EA + F  ++   L P++  YN +I G  K GK  +AL     MKE  
Sbjct: 548 LIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLI---------- 251
             P + T++ L+    K    D +D+ LKM   M +  CSPD +TYN +I          
Sbjct: 608 CPPNTVTFNALLDCLCKN---DAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAG 664

Query: 252 ---------QEFAC----------AGLLK--RMEGTYKSML--TKRMHLRSSTMV--AIL 286
                    ++F             G++K  R+E   K ++    +  L++S  V   ++
Sbjct: 665 YAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELM 724

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG- 345
           +  +    +++   F + L+ +     ++L+  L  V  K         L D     +G 
Sbjct: 725 ECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGT 784

Query: 346 --RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
               E   CL      C ++   +   V EM++A    N+ T N++L A+ K K    L 
Sbjct: 785 HPTPESYNCLMDGLLGCNITEAALKLFV-EMKNAGCCPNIFTYNLLLDAHGKSKRIDELF 843

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
            L +E+  R  KP+I+T  I+  A
Sbjct: 844 ELYNEMLCRGCKPNIITHNIIISA 867



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 3/183 (1%)

Query: 92   LQILQHDGDWTKDHFWAVIRFLKNS-SRSRQIPQVFDMWKNIEKSRIN-EFNSQKI-IGM 148
            ++I +   D+      A+   L N   ++  +    D++K + K  I  +  S  I +  
Sbjct: 913  MKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVEC 972

Query: 149  LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            L   G +++AV  F+E++   L P    YN +I+G  K  +  EAL   +EMK   +SP+
Sbjct: 973  LFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPE 1032

Query: 209  SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              TY+ LI  +G   M D+     + ++  G  P+  TYN LI+  + +G   R    +K
Sbjct: 1033 LYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFK 1092

Query: 269  SML 271
             M+
Sbjct: 1093 KMM 1095



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 158/398 (39%), Gaps = 13/398 (3%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R R    + D+ + +E    R N +     I +L   G +++A    + ME     P +
Sbjct: 238 GRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDV 297

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y  +I      GK ++A     +M+  +  P   TY  L+  +G Y   + +      
Sbjct: 298 VTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSE 357

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+ DG +PD +TY +L++    +G + +       M  + +     T   ++   +N   
Sbjct: 358 MEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRR 417

Query: 295 LDKMEKFYKRLLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC- 352
           LD+  + +  + +    P     V    + Y K     +  D  + +  R     +  C 
Sbjct: 418 LDEALELFNNMESLGVAPTAYSYVL-FIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACN 476

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
             L S A +   R    +  ++ +  +  +  T N+++  Y K         LL+E+ + 
Sbjct: 477 ASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSE 536

Query: 413 HVKPDIVT----IGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
             +PDI+     I  LY A R+      A +M+ R+  L     + T  +++   GK   
Sbjct: 537 GCEPDIIVVNSLIDTLYKAGRV----DEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGK 592

Query: 469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506
           L    +++ S++         T+  L+D + K++  +L
Sbjct: 593 LLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDL 630



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 30/319 (9%)

Query: 145  IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            +I +LC++    +A + F +  +     P+ E YN ++ G         AL    EMK  
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
               P   TY+ L+ A+GK K  DE+      M   GC P+ IT+N++I     +  + + 
Sbjct: 818  GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKA 877

Query: 264  EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR- 318
               Y  +++        T   ++   +  G  ++  K ++ + +        +   L+  
Sbjct: 878  LDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILING 937

Query: 319  --KLAEVYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VR 372
              K   V I   +F R+  + +  DL S    T LV CL        ++ R  D+V    
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRPDLKS---YTILVECL-------FMTGRVDDAVHYFE 987

Query: 373  EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
            E++   +  +  + N+++    K +  +    L SE+  R + P++ T    Y+A  + F
Sbjct: 988  ELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYT----YNALILHF 1043

Query: 433  DGTG----ALEMWKRIGFL 447
               G    A +M++ + F+
Sbjct: 1044 GNAGMVDQAGKMFEELQFM 1062



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query: 155  MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
            +EEA+  F EM+   + P L  YN++I  +   G  ++A     E++ M L P   TY+ 
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073

Query: 215  LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
            LI+ + K    D      K M + GCSP+  T+
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 154/398 (38%), Gaps = 28/398 (7%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++ FL+   R   +  VFD+ +    +R N      I   L  +G + +A  A  +M   
Sbjct: 128 MLEFLRVHGRVEDMAFVFDLMQKQVINR-NPNTYLTIFKALSIKGGIRQAPFALGKMRQA 186

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
               +   YN +I+   + G   EAL     M    L P   TY  L+ A G+ +    I
Sbjct: 187 GFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTI 246

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L+ M+  G  P+  TY + I+    AG +    G  K+M  +       T   ++DA
Sbjct: 247 MDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDA 306

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD-DLASRI--- 344
               G LDK ++ Y ++  S    K DLV      YI   + S+  + GD +   R    
Sbjct: 307 LCAAGKLDKAKELYTKMRASSH--KPDLV-----TYIT--LMSKFGNYGDLETVKRFWSE 357

Query: 345 ----GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW---NVTTANIILLAYLKMK 397
               G    V    +L  A   S + +D     ++  +VR    N+ T N ++   L ++
Sbjct: 358 MEADGYAPDVVTYTILVEALCKSGK-VDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLR 416

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEIN 454
                  L + + +  V P   +  +  D      D   AL+ ++++   G +      N
Sbjct: 417 RLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACN 476

Query: 455 TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492
                LA  G+   +R  +++++ +          TY 
Sbjct: 477 ASLYSLAEMGR---IREAKDIFNDIHNCGLSPDSVTYN 511



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 117  SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             +SR++ +   ++  ++   I+   +    +I      G++++A + F+E++   L+P++
Sbjct: 1009 GKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNV 1068

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
              YN++I G+SK G  + A     +M  +  SP + T+
Sbjct: 1069 FTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 11/139 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F+ M    +KP++  YN++I+GY   GK +EA+  L+ 
Sbjct: 479 FNS--IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M  + L P + TY  LI  Y K    ++  +  K M+  G SPD ITYN+++Q     GL
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GL 591

Query: 260 LKRMEGTYKSMLTKRMHLR 278
            +    T ++   K +++R
Sbjct: 592 FQ----TRRTAAAKELYVR 606



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 2/166 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  II  LC+   M++A+     M    + P    YNSI+HGY   G+  EA+ FL +
Sbjct: 234 YNS--IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   + P   TY  L+    K     E       M   G  P+  TY  L+Q +A  G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L  M G    M+   +H        ++ AY N G +D+    + ++
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKM 397



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 150/360 (41%), Gaps = 15/360 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA + F  M    LKP +  Y +++ GY+  G   E    L+ M    + P 
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              +  LI AY      D+  +    M+  G +P+ +TY  +I     +G ++     ++
Sbjct: 371 HYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M+ + +   +    +++         ++ E+    +L+    L       + + + K  
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 329 MFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVT 384
                + L  +L  RIG +  ++    L++  CL     +D  ++    M S  ++ N  
Sbjct: 491 RVIESEKL-FELMVRIGVKPNVITYNTLINGYCLAGK--MDEAMKLLSGMVSVGLKPNTV 547

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYDARRIGFDGTGALEM 440
           T + ++  Y K+   +   VL  E+ +  V PDI+T  I    L+  RR       A E+
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT----AAAKEL 603

Query: 441 WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
           + RI      +E++T  ++L    K        +++ +L     + +  T+  +ID ++K
Sbjct: 604 YVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 104 DH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           DH  F  +I    N  +  Q   VF   +  +    N      +IG+LC+ G +E+A+  
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQ-QGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F++M    L P   +YNS+IHG     K+  A   + EM +  +   +  ++ +I ++ K
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                E +   ++M   G  P+ ITYN LI  +  AG +         M++  +   + T
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNS 308
              +++ Y     ++     +K + +S
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESS 575



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG  ++A   + EM    + P +  YNSII    K    ++A+  LN M +  
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M+ DG  PD +TY+LL+      G      
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 25/285 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C  G M+EA++    M    LKP+   Y+++I+GY KI +  +AL+  
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM+   +SP   TY+ ++Q   + +           +   G   +  TYN+++      
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            L       ++++    + L + T   ++DA +  G  D+ +  +    ++         
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           R +AE  I   +   LD L                L +  + C +    ++ +VRE+   
Sbjct: 690 RLMAENIIGQGLLEELDQL---------------FLSMEDNGCTVDSGMLNFIVRELLQ- 733

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
             R  +T A      YL M D KH  +   E  T  +  D+++ G
Sbjct: 734 --RGEITRAG----TYLSMIDEKHFSL---EASTASLFIDLLSGG 769



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           N F+   ++  LC+E   +EA+     M    G    P +  Y ++I+G+ K G  ++A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              +EM +  + P   TY+ +I A  K +  D+    L  M  +G  PD +TYN ++  +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 255 ACAGLLKRMEGTYKSM 270
             +G  K   G  K M
Sbjct: 277 CSSGQPKEAIGFLKKM 292


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 42/308 (13%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D +K    S I  +E     ++  LC+ G +EEAV    EM+G  +   +  Y ++I GY
Sbjct: 369 DQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGY 428

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
              GK  +A     EMKE  + P   TY+ L+  + +  +  E    L  +   G  P+ 
Sbjct: 429 CLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNS 488

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            T+N +I+    AG +K  E    ++  K +   S    A++D Y       K  + + R
Sbjct: 489 ATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYS----AMVDGYCKANFTRKAYELFSR 544

Query: 305 LLNSRTPLKEDLVRKLA-EVYIKNYMFSRLDDL----GDDLASRIGRTELVWCLRLLSHA 359
           L       K+ ++R LA +V     M+ +L       GD     + R +LV+ +      
Sbjct: 545 LS------KQGILRMLALDVEPNQIMYGKLIGAFCRDGD-----MKRAQLVFDM------ 587

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             L  RGI              +V T  +++  Y ++   +  R + +++  R +KPD++
Sbjct: 588 --LVERGITP------------DVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVI 633

Query: 420 TIGILYDA 427
           T  ++ D 
Sbjct: 634 TYTVVLDG 641



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 122/302 (40%), Gaps = 28/302 (9%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E G ++ AV  ++ ++   L P+   Y   I    + G F EA+    EM+E  ++P 
Sbjct: 202 LIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPN 261

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + T    I+    +K  D     L+ ++      D   Y  +I+ F     LK  E  + 
Sbjct: 262 AVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFI 321

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN- 327
            M+ + +        A++ AY   G L +    +  ++++   +K +LV +  E      
Sbjct: 322 DMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSN--GIKTNLVDQFKEFRDSGI 379

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
           ++   L ++  D   ++G+ E    + LL+               EM+  ++  +V    
Sbjct: 380 FLDEVLYNIVVDALCKLGKVE--EAVELLN---------------EMKGRRMSLDVVHYT 422

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMWKR 443
            ++  Y         + +  E+  R ++PDIVT  IL      GF   G    ALE+   
Sbjct: 423 TLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVG----GFSRNGLKKEALELLDC 478

Query: 444 IG 445
           IG
Sbjct: 479 IG 480



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+    K+IG  C +G M+ A   F  +    + P +  Y  +I+GY ++    EA    
Sbjct: 561 NQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIF 620

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           N+MKE  + P   TY  ++  + K   + D I++  +M+   G  PD +TY  L+
Sbjct: 621 NDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIA-RGLQPDIVTYTALL 674



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 118/286 (41%), Gaps = 24/286 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N++     I  LC +G  EEAV  F+EME   + P+    ++ I G     + +     L
Sbjct: 226 NDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEAL 285

Query: 198 NEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             ++  N    +  Y  +I+ +  + K+ +  D+ + M+  +G +PD   Y  LI  +  
Sbjct: 286 RALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVN-EGIAPDGYIYGALIHAYCK 344

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG L +    +  M++                    G+   +   +K   +S   L E L
Sbjct: 345 AGNLLQAVALHNDMVSN-------------------GIKTNLVDQFKEFRDSGIFLDEVL 385

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREM 374
              + +   K        +L +++  R    ++V    L++  C L  + +D+  +  EM
Sbjct: 386 YNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYC-LQGKLVDAKNMFEEM 444

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   +  ++ T NI++  + +    K    LL  + T+ +KP+  T
Sbjct: 445 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSAT 490



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 53/129 (41%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    ++P+  +Y  +I  + + G    A L  + + E  ++P   TY  +I  Y +   
Sbjct: 553 MLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNC 612

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E       MK  G  PD ITY +++   +    L+     Y  M+ + +     T  A
Sbjct: 613 LREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTA 672

Query: 285 ILDAYMNFG 293
           +L    NFG
Sbjct: 673 LLPGKCNFG 681


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 9/303 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++ L+ EA+    EM    + P++  Y+SI+HG+  +G+ NEA     +M E N
Sbjct: 123 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN 182

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + T++ L+    K  M  E     + M   G  P+  TYN L+  +     +   +
Sbjct: 183 VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQ 242

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
             +  M+ K       +   ++  +   G +D+ +     +  S   L  D V    L +
Sbjct: 243 KLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM--SHKALTPDTVTYSTLMK 300

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKV 379
            + ++        L +++ S     +L+    +L   C   H  +D    +++ M+ +K+
Sbjct: 301 GFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH--LDEAFELLKAMQESKI 358

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             N+    I++         +  R L S L  + ++PD+VT  ++      G     A E
Sbjct: 359 EPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACE 418

Query: 440 MWK 442
           +++
Sbjct: 419 LFR 421



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 123/282 (43%), Gaps = 3/282 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G    A++  ++ME    KP++ +Y++II    K     EA+ FL+EM    
Sbjct: 88  IINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRG 147

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY  ++  +      +E     K M      PD +T+N+L+   +  G++   +
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQ 207

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +++M+ K +    +T  A++D Y +   +D+ +K +  ++             L + +
Sbjct: 208 CVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGH 267

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            K+        L  +++ +    + V    L+   C    R  D+  ++ EM S  +  +
Sbjct: 268 CKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC-QDGRPQDAQKLLEEMRSYGLLPD 326

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + T +I+L    K         LL  +    ++P+I    IL
Sbjct: 327 LMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTIL 368



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 39/298 (13%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K +E + +N +N+  ++   C +  M+EA + F  M      PS+  YN +I G+ K G+
Sbjct: 216 KGVEPN-VNTYNA--LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR 272

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            +EA   L EM    L+P + TY  L++ + +     +    L+ M+  G  PD +TY++
Sbjct: 273 IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSI 332

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           ++      G L       K+M   ++         ++    NFG L+   + +  L    
Sbjct: 333 VLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL---- 388

Query: 310 TPLKEDLVRKL-AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
                  V+ +  +V     M S L   G                 L + AC L      
Sbjct: 389 ------FVKGIQPDVVTYTVMISGLLKGG-----------------LSNEACEL------ 419

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              R+M       N  T N+I+  +L+  D  +   L+ E+  R    D  T  +L D
Sbjct: 420 --FRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 118/276 (42%), Gaps = 9/276 (3%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +AV+ F EM     +P +  Y++II+G  K+G    A+  L +M+E    P    Y  +I
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            +  K K+  E    L  M   G SP+ +TY+ ++  F   G        +K M+ + + 
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM 184

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
             + T   ++D     GM+ + +  ++ ++        +    L + Y      S++D+ 
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQ---SQMDEA 241

Query: 337 GD--DLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILL 391
               ++  R G    V    +L      S R ID    ++ EM    +  +  T + ++ 
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGR-IDEAKGLLAEMSHKALTPDTVTYSTLMK 300

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            + +    +  + LL E+ +  + PD++T  I+ D 
Sbjct: 301 GFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDG 336



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 104/272 (38%), Gaps = 9/272 (3%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A      M    L+P+   ++++++G S   K  +A+   +EM +M   P   TY  +I 
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
              K          LK M+  GC P+ + Y+ +I       L+         M+ + +  
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              T  +IL  + N G  ++    +K+++             L +   K  M      + 
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVF 210

Query: 338 DDLASRIGRTELVWCLRLLSHACLLS-----HRGIDSVVREMESAKVRWNVTTANIILLA 392
           + +  +     +     L+   C  S      +  + +VR+  +  VR    + NI++  
Sbjct: 211 ETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVR----SYNILIKG 266

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + K       + LL+E+  + + PD VT   L
Sbjct: 267 HCKSGRIDEAKGLLAEMSHKALTPDTVTYSTL 298


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 58/324 (17%)

Query: 119 SRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPS 173
           +R++ +   ++K I  S  R++  +S  +I  LC E  + EA   FQEM   E  A KP 
Sbjct: 129 ARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPD 188

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y ++I G+ K G   +A+  L  M+     P   TY  L+    K    D+     +
Sbjct: 189 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 248

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M   GC P+ +TY  LI     A  +         M        + +  A+LD Y   G
Sbjct: 249 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLG 308

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
            +++ ++ +K                  E+  K+ +  R                     
Sbjct: 309 RIEEAKQLFK------------------EMAAKSCLPDR--------------------- 329

Query: 354 RLLSHACLLSHRGIDSVVREME----------SAKVRWNVTTANIILLAYLKMKDFKHLR 403
             +++ CL+  RG  +  R  E          +A +  +V T +I++  Y + K F    
Sbjct: 330 --ITYTCLV--RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAA 385

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
             + E+  R+V P+ VT   L D 
Sbjct: 386 EFIQEMIARNVAPNAVTYSSLIDG 409



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 140/362 (38%), Gaps = 44/362 (12%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQ-----KIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R R+I + +++++ +E      +         +I   C+ G +E+A++    MEG    P
Sbjct: 163 RERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 222

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++  Y+S++HG  K G  ++AL     M      P   TY  LI         D   + +
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M    C  D ++YN L+  +   G ++  +  +K M  K       T   ++  + N 
Sbjct: 283 DEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
             L++  +F    + +   +  D+V    +   Y +   F    +   ++ +R      V
Sbjct: 343 SRLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 401

Query: 351 WCLRLLSHAC---LLSHR-----------------------GID------SVVREMESAK 378
               L+   C    ++H                        G D      +++ EM + +
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKR 461

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V  +V T N ++ A  ++ D      LL  +    ++P +VT   L +    GF  TG +
Sbjct: 462 VEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE----GFSRTGRM 517

Query: 439 EM 440
           E+
Sbjct: 518 EI 519



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           NE     ++  LC+  L  +A    +EM +G ++ P L  Y+++I+G+ K G+ + A   
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 197 LNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L EM   + ++P   TY  ++    +    D     ++ MKL G  PD  T++ LI  + 
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
            A  +      YK +LT    L + +  A++
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALI 158



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 148/391 (37%), Gaps = 54/391 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           +I   C++G M+ A    +EM   +G A  P +  Y S++ G  + GK + A   + EMK
Sbjct: 51  VINGFCKQGEMDRACEILREMVTRDGMA--PDVVTYTSVVDGLCRDGKMDRACEMVREMK 108

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              + P   T+  LI  +   +  DE     K +    C  D ++ + LI      GL +
Sbjct: 109 LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALIT-----GLCR 163

Query: 262 RMEGTYKSMLTKRMHLRSS--------TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
                    L + M +R          T  A++D +   G L+K  K    ++  R    
Sbjct: 164 ERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLG-VMEGR---- 218

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGD-----DLASRI---GRTELVWCLRLLSHACLLSHR 365
               + +  V   + +   L   GD     DL  R+   G    V     L H    +H+
Sbjct: 219 ----KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHK 274

Query: 366 GIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
            +D+   ++ EM +     +  + N +L  Y ++   +  + L  E+  +   PD +T  
Sbjct: 275 -VDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYT 333

Query: 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEI--NTDP------LVLAVYGKGHFLRYCEE 474
            L      GF     LE  +   FL + ++     DP      +V+A Y +        E
Sbjct: 334 CLVR----GFCNASRLEEAR---FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 386

Query: 475 VYSSLEPYSREKKRWTYQNLIDLVIKHNGKN 505
               +   +      TY +LID + K    N
Sbjct: 387 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVN 417



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC+ G +  A+   + ++    KP +  Y  +I G     +  EAL  L
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLL 454

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    + P   T++ +I A  +    DE    L  M   G  P  +TY  L++ F+  
Sbjct: 455 EEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRT 514

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           G   RME  Y+     R   + S+  A L     F  L
Sbjct: 515 G---RMEIAYELFEVMRRKAKKSSSAANLVPEQAFSAL 549



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-MNLSPQSDTYDGLIQAYGKYKMYDE- 227
           + P+   YN +++G  K    ++A   L EM++  +++P   TY  +I  + K    D  
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            ++  +M+  DG +PD +TY  ++      G + R     + M  K +     T  A++ 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPL 312
            + N   +D+  K YK +L S   L
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRL 149


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 136/324 (41%), Gaps = 20/324 (6%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           +  +I  L   G +  A R F+         ++  ++++I  Y + G   EA+   N MK
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295

Query: 202 EMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           E  L P   TY+ +I A GK  M + ++      M+ +   PD IT+N L+   +  GL 
Sbjct: 296 EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLW 355

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
           +     +  M  +R+     +   +LDA    G +D   +   ++   R          +
Sbjct: 356 EAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTV 415

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--------HRGIDSVVR 372
            + + K   F    +L  ++        L   L  +S+  LLS           +D ++R
Sbjct: 416 IDGFAKAGRFDEALNLFGEM------RYLNIALDRVSYNTLLSIYTKVGRSEEALD-ILR 468

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM S  ++ +V T N +L  Y K   +  ++ + +E+   HV P+++T   L D    G 
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGG 528

Query: 433 DGTGALEMWKRIGFLFKTVEINTD 456
               A+E+++     FK+  +  D
Sbjct: 529 LYKEAMEVFRE----FKSAGLRAD 548



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 26/284 (9%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           NI   R++ +N+  ++ +  + G  EEA+   +EM    +K  +  YN+++ GY K GK+
Sbjct: 439 NIALDRVS-YNT--LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           +E      EMK  ++ P   TY  LI  Y K  +Y E     +  K  G   D + Y+ L
Sbjct: 496 DEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSAL 555

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I      GL+         M  + +     T  +I+DA   FG    ME+          
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA---FGRSATMERSADYSNGGSL 612

Query: 311 PLKEDLVRKLAEVYIKNY--MFSRLDDLGDDLASRI---GRTELVWCLRLLSHACLLSHR 365
           P     + +L E        +F +L   G++  ++    G  EL         +C+L   
Sbjct: 613 PFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQEL---------SCIL--- 660

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
               V R+M   +++ NV T + IL A  +   F+   +LL EL
Sbjct: 661 ---EVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 21/243 (8%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           ++   W   R L +   +R+I Q             + F+   ++  +C+ G M+ A   
Sbjct: 350 SRGGLWEAARNLFDEMSNRRIEQ-------------DVFSYNTLLDAICKGGQMDLAFEI 396

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             +M    + P++  Y+++I G++K G+F+EAL    EM+ +N++    +Y+ L+  Y K
Sbjct: 397 LAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTK 456

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS- 280
               +E    L+ M   G   D +TYN L+  +   G    ++  +  M  KR H+  + 
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM--KREHVLPNL 514

Query: 281 -TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLG 337
            T   ++D Y   G+  +  + ++   ++   L+ D+V    L +   KN +      L 
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEVFREFKSA--GLRADVVLYSALIDALCKNGLVGSAVSLI 572

Query: 338 DDL 340
           D++
Sbjct: 573 DEM 575



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 115/277 (41%), Gaps = 6/277 (2%)

Query: 120 RQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +Q+ + FD M +N ++  RI  FNS  ++ +    GL E A   F EM    ++  +  Y
Sbjct: 321 KQVAKFFDEMQRNCVQPDRIT-FNS--LLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSY 377

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++    K G+ + A   L +M    + P   +Y  +I  + K   +DE       M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              + D ++YN L+  +   G  +      + M +  +     T  A+L  Y   G  D+
Sbjct: 438 LNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           ++K +  +              L + Y K  ++    ++  +  S   R ++V    L+ 
Sbjct: 498 VKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALID 557

Query: 358 HACLLSHRGID-SVVREMESAKVRWNVTTANIILLAY 393
             C     G   S++ EM    +  NV T N I+ A+
Sbjct: 558 ALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 15/271 (5%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R F+++      P++  +N +I    K G+  EA    + MKEM   P   T++ LI  Y
Sbjct: 178 RLFEQLPA----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           GK    DE++  ++ M+  GC  D +TYN LI  F   G ++   G + +M  + +    
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---L 336
            T    +DA+   G++ +  K + ++      L E     L +   K     RLDD   L
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA---GRLDDAIVL 350

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGI---DSVVREMESAKVRWNVTTANIILLAY 393
            D++  +     +V    L+   C    R +   + V+R ME A VR N      ++  +
Sbjct: 351 LDEMVRQGVPLNVVTYTVLVDGLC--KERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              K+ +    LLSE+  + ++ DI   G L
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGAL 439



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +S ++P+   M + I  S     N           G + EAV+ F EM    +     +Y
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNN-----------GCLNEAVQLFNEMVHKGMSLDKVVY 528

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            +++ GY K G  ++A     +M +  L      Y   I  +    M  E       M  
Sbjct: 529 TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIG 588

Query: 238 DGCSPDHITYNLLIQEF 254
            G +PD   YN LI + 
Sbjct: 589 HGIAPDRAVYNCLITQI 605


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 113  LKNSSRSRQIPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            +K    +R++    +++K +E+S     + F    I+  L + G +++A R  ++M    
Sbjct: 919  IKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKG 978

Query: 170  LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
              P++  Y+S++HG  K GK +EA   L  M     SP   TY+ +I  + K    DE  
Sbjct: 979  CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAY 1038

Query: 230  MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
              L+ M   GC P+ +TY +L+  F   G  +   G  + M+ K
Sbjct: 1039 HLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 1082



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +++A   FQEM G    P+L  YN++I G  KI K  +A   L  M++ +
Sbjct: 586 LINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQS 645

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-------CA 257
            +P S TY  LI         +E    L+ MK  GC PD +TY  L++            
Sbjct: 646 CTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVE 705

Query: 258 GLLKRMEGT 266
            LLK ME T
Sbjct: 706 QLLKEMEAT 714



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 126/303 (41%), Gaps = 39/303 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++EA R   +M     +P++  Y +++ G+ ++G  + A+  + +M E  
Sbjct: 306 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + TY+ ++  + +    +     L+MM   GC PD I Y+ +I  F  AG L+   
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF---------------YKRLLNS- 308
              + M+ +      + +  ++DA      +D  ++                Y  L+++ 
Sbjct: 426 DLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485

Query: 309 ----RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
               R P  E  +    +V +KN  +        D+ +     + +   R ++ A LL  
Sbjct: 486 CKAKRLPEAESWL----DVMVKNRCYP-------DVVTYNSVVDGLCKSRRINDAFLLFD 534

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           R        M +A V  +V T +I++ ++ K  +      +L  +      PD+VT   L
Sbjct: 535 R--------MRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSAL 586

Query: 425 YDA 427
            + 
Sbjct: 587 ING 589



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 9/293 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +   +++A+R  +EM      P++  YN+++HG+ K  +   AL  L +M    
Sbjct: 236 MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG 295

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y  +I    K    DE    +  M   GC P+ ITY  L+  F   G L    
Sbjct: 296 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV 355

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M  +     + T   I+  +     +++  +  + ++ +  P        +   +
Sbjct: 356 ELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGF 415

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRW 381
            K        DL + +  R  R + V CL  L  A L     IDS   ++R         
Sbjct: 416 CKAGKLREAHDLLEQMIRRGCRPD-VACLSTLIDA-LCKAAAIDSAQELLRMSIGMDCAP 473

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD----ARRI 430
           +V   +I++ A  K K        L  +      PD+VT   + D    +RRI
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRI 526



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 137/365 (37%), Gaps = 41/365 (11%)

Query: 69   ESY-HEHQALNALIQRLN--KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV 125
            E Y H+    N L+Q L   K+    LQ+ ++    + + F   I  +    R+  I   
Sbjct: 838  EGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTI-LIHGLCRAGDIGTA 896

Query: 126  FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIH 182
            +++ K + +  +  N      +I  LC    ++ A+  F+EME   +  P +  Y++I+ 
Sbjct: 897  YELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVD 956

Query: 183  GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
               K GK ++A   + +M     SP   TY  L+    K    DE    L+ M   GCSP
Sbjct: 957  SLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSP 1016

Query: 243  DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            + +TYN +I      G +       + M+         T   +LDA+   G         
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK-------- 1068

Query: 303  KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                       ED +  L EV ++      L      L     + E+    +LLS     
Sbjct: 1069 ----------AEDAI-GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS----- 1112

Query: 363  SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                       M       NV + N ++    K        +LL ++ + +  PDIVT  
Sbjct: 1113 ----------SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162

Query: 423  ILYDA 427
             + DA
Sbjct: 1163 TIIDA 1167



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 4/210 (1%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLM 155
           +G W  D        +    R+ +I   ++++  + +  +       + I+  LC+ G  
Sbjct: 154 EGQWGGDTV-TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQC 212

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
            +AV  F+EM      P    YN++I+G SK  + ++A+  L EM +   +P   +Y+ +
Sbjct: 213 SDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTV 271

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  + K    +     L+ M   GC PD ++Y  +I        +         M+ +  
Sbjct: 272 LHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGC 331

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                T   ++D +   G LD   +  +++
Sbjct: 332 QPNVITYGTLVDGFCRVGDLDGAVELVRKM 361



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 2/190 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +SR+I   F ++  +  + +  +      +I   C++  ++ A +  + M+     P + 
Sbjct: 522 KSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVV 581

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+++I+G  K G  ++A     EM     +P   TY+ LI    K    ++    L++M
Sbjct: 582 TYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIM 641

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +   C+PD ITY  LI     A  L+      + M  K       T   +L A      L
Sbjct: 642 RKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNL 701

Query: 296 DKMEKFYKRL 305
           + +E+  K +
Sbjct: 702 ELVEQLLKEM 711



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 132  IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
            +EK  + N F    ++ M C++  +E A +    M      P++  YN++I G  K  K 
Sbjct: 1080 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139

Query: 191  NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +E +L L +M   N  P   T++ +I A  K    D       +++  GC+P+ +TYN L
Sbjct: 1140 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 1199

Query: 251  I 251
            +
Sbjct: 1200 V 1200



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 59/153 (38%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      I+ + C    ME A +  Q M      P    Y++II G+ K GK  EA  
Sbjct: 367 RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHD 426

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M      P       LI A  K    D     L+M     C+PD + Y++LI    
Sbjct: 427 LLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALC 486

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            A  L   E     M+  R +    T  +++D 
Sbjct: 487 KAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDG 519



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + EA      M      P +  YNS++ G  K  + N+A L  + M+   
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  +I ++ K    D     L+ MK   C PD +TY+ LI     AG + +  
Sbjct: 541 VMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAF 600

Query: 265 GTYKSML 271
             ++ ML
Sbjct: 601 DVFQEML 607



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M KN     +  +NS  ++  LC+   + +A   F  M    + P +  Y+ +IH + K 
Sbjct: 501 MVKNRCYPDVVTYNS--VVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKD 558

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              + A   L  MKE    P   TY  LI    K    D+     + M   GC+P+ +TY
Sbjct: 559 NNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTY 618

Query: 248 NLLI 251
           N LI
Sbjct: 619 NTLI 622



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 142/382 (37%), Gaps = 33/382 (8%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHD----GDWTKDHFWAVI 110
            L  H+  H ++L       Q  +A++       +CP   + ++    G    D     I
Sbjct: 191 GLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAI 250

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           R L+    +   P VF             +N+  ++   C+   +E A+   ++M     
Sbjct: 251 RLLEEMVDNGFAPNVF------------SYNT--VLHGFCKANRVENALWLLEQMVTRGC 296

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P +  Y ++I+G  K+ + +EA   +++M +    P   TY  L+  + +    D    
Sbjct: 297 PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVE 356

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            ++ M   G  P+ ITYN ++  F     ++R     + M+       +     I+  + 
Sbjct: 357 LVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFC 416

Query: 291 NFGML----DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
             G L    D +E+  +R           L+  L +        + +D   + L   IG 
Sbjct: 417 KAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKA-------AAIDSAQELLRMSIGM 469

Query: 347 --TELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
                V    +L HA   + R    +S +  M   +   +V T N ++    K +     
Sbjct: 470 DCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDA 529

Query: 403 RVLLSELPTRHVKPDIVTIGIL 424
            +L   +    V PD+VT  I+
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIV 551



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 5/203 (2%)

Query: 118  RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSL 174
            ++ ++   ++++  I++S    N      ++  LC+    ++A    +EM       P +
Sbjct: 1170 KTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 1229

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
              YN++I G  K  + + A     +M    L+P   TY  +I +  K++  DE +  L++
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 1289

Query: 235  MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
            M  +G  P  ITY  LI  F   G L +     + +L+K  +    T    +D     G 
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 295  LDKMEKFYKRLLNSRTPLKEDLV 317
            L +  +  + +L  R  L  D V
Sbjct: 1350 LRQAGELLETML--RAGLVPDTV 1370



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 67/163 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++ A    +   G    P +  Y+ +IH   K  +  EA  +L+ M +  
Sbjct: 446 LIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNR 505

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ ++    K +  ++  +    M+  G  PD +TY+++I  F     L    
Sbjct: 506 CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF 565

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              + M   +      T  A+++     G +DK    ++ +L 
Sbjct: 566 KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLG 608



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 51/107 (47%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I   C+ G +++A+   Q +      P +  ++  I   SK G+  +A   L  M    
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 1364

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            L P + TY+ L++ +    + ++     ++M+  GC PD+ TY  L+
Sbjct: 1365 LVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 48/115 (41%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC+   M+EA    + M      P    Y ++I G+ K G  ++AL  L  +    
Sbjct: 1270 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
              P   T+   I    K     +    L+ M   G  PD +TYN L++ F  A L
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASL 1384



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 120  RQIPQVFDMWK--NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEI 176
            +Q  Q F +W+   +E    +      ++ M C  GL++ AV  F  +   + L+P ++ 
Sbjct: 1501 KQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDH 1560

Query: 177  YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
            ++ +I    ++G  NEA    + M  M   P + T++ L+ A   YK+  + +  L++ +
Sbjct: 1561 FSCVIDLLGRLGLVNEA---EDLMLGMPCKPSAATWNCLLSA---YKICGDFERALRVAE 1614

Query: 237  LDGCSPDHITYNLLIQEFA 255
            L+   P   +Y LL   +A
Sbjct: 1615 LN---PTQASYLLLSNMYA 1630


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 157 EAVRAF-QEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           E VR +  +M+G    +P++  YN ++  +++ GK ++      ++    +SP   T++G
Sbjct: 189 EKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNG 248

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ AYGK  M  E++  L  M+ + C PD IT+N+LI  +      ++ME T+KS++  +
Sbjct: 249 VMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSK 308

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 T  +++  Y    M+DK E  +K++
Sbjct: 309 EKPTLPTFNSMIINYGKARMIDKAEWVFKKM 339



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 170/411 (41%), Gaps = 41/411 (9%)

Query: 37  AKTLIRKPISCCCLSSAPSLDYHST--KHTTLLVESY----HEHQALNALIQRLNKKVSC 90
           A+   R  I+C  +SS   L    +  +   +LV S      + + L   + +  K V C
Sbjct: 38  ARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRC 97

Query: 91  PLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGML 149
                        DH + +   L  S +  Q  +VF  W   ++  I +     K+I ++
Sbjct: 98  -------------DHCFLLFEELGKSDKWLQCLEVF-RWMQKQRWYIPDNGVYSKLISVM 143

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNEMKEMN- 204
            ++G    A+  F EM+    +P   +YN++I    H   K     +   +L++MK +  
Sbjct: 144 GKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIER 203

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L++A+ +    D+++   K + +   SPD  T+N ++  +   G++K ME
Sbjct: 204 CQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEME 263

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M +        T   ++D+Y      +KME+ +K L+ S    KE          
Sbjct: 264 AVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRS----KEKPTLPTFNSM 319

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVREM-----ES 376
           I NY  +R+ D  + +  ++   ++ +    +++ C++    + G  S  RE+     ES
Sbjct: 320 IINYGKARMIDKAEWVFKKM--NDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGES 377

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +V    +T N +L  Y +   +     L        V PD  T   LY A
Sbjct: 378 DRV-LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 15/271 (5%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R F+++      P++  +N +I    K G+  EA    + MKEM   P   T++ LI  Y
Sbjct: 178 RLFEQLPA----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           GK    DE++  ++ M+  GC  D +TYN LI  F   G ++   G + +M  + +    
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---L 336
            T    +DA+   G++ +  K + ++      L E     L +   K     RLDD   L
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA---GRLDDAIVL 350

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGI---DSVVREMESAKVRWNVTTANIILLAY 393
            D++  +     +V    L+   C    R +   + V+R ME A VR N      ++  +
Sbjct: 351 LDEMVRQGVPLNVVTYTVLVDGLC--KERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              K+ +    LLSE+  + ++ DI   G L
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGAL 439



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 37/228 (16%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEF-------------NSQKIIGMLCE----------- 151
           + R++ +  D+ + +EK+  R NE              NS+K +G+L E           
Sbjct: 375 KERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDIS 434

Query: 152 ------EGL-----MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
                 +GL     ++EA     +M+   L+P+  IY +++    K GK  EA+  L ++
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKI 494

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            +    P   TY  LI    K    DE       M+  G  P+   Y  L+      G L
Sbjct: 495 LDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL 554

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                 +  M+ K M L      A+LD Y+  G L        ++++S
Sbjct: 555 NEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS 602



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 63/157 (40%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G + EA+   Q++     +P++  Y ++I G  K G  +EA+   N+M+++ L P   
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y  L+    K    +E       M   G S D + Y  L+  +   G L         M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           +   + L        +  + N  M+ +  + +  ++ 
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIG 636



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      ++  LC+E  + EA    + ME   ++ +  +Y ++IHG+       +AL  
Sbjct: 361 LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGL 420

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EMK   L      Y  LIQ        DE    L  M   G  P++I Y  ++     
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +G +       + +L         T  A++D     G +D+    + ++
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 137 INEFNSQKIIGM-------------LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           I+ FN  + +G+             LC+ G + EAV+ F EM    +     +Y +++ G
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y K G  ++A     +M +  L      Y   I  +    M  E       M   G +PD
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 244 HITYNLLIQEF 254
              YN LI ++
Sbjct: 643 RAVYNCLISKY 653



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           I   C   +M EA   F EM G  + P   +YN +I  Y K+G   EA+   +EM+ +
Sbjct: 615 ISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 148/361 (40%), Gaps = 17/361 (4%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAF 162
           D +  ++R L N   S +  + F+     E  +  +   +  +I  L   G +E A   F
Sbjct: 154 DDYTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVF 213

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                     ++  ++++I  Y + G  NEA+   + MK   L P   TY+ +I A GK 
Sbjct: 214 DTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKG 273

Query: 223 KM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            + + ++      M  +G  PD IT+N L+   +  GL +     + +M+ K +     T
Sbjct: 274 GVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFT 333

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYM-FSRLDDLGDD 339
              +LDA    G +D   +     + S  P K  L   +     I  Y    RLDD  + 
Sbjct: 334 YNTLLDAVCKGGQMDLAFE-----IMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNM 388

Query: 340 LAS----RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
                   +G   + +   L  +A L        V +EME+A +R +V T N +L  Y K
Sbjct: 389 FNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGK 448

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT 455
              +  +R +  E+    V P+++T   L D    G     A+E+++     FK   +  
Sbjct: 449 QYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFRE----FKQAGLKA 504

Query: 456 D 456
           D
Sbjct: 505 D 505



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 4/179 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  +C+ G M+ A     EM    + P++  Y+++I GY+K+G+ ++AL   NE
Sbjct: 332 FTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNE 391

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK + +     +Y+ L+  Y K   +++ +D+C K M+  G   D +TYN L+  +    
Sbjct: 392 MKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVC-KEMENAGIRKDVVTYNALLAGYGKQY 450

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
               +   ++ M   R+     T   ++D Y   G+  +  + ++     +  LK D+V
Sbjct: 451 RYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREF--KQAGLKADVV 507



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 10/279 (3%)

Query: 120 RQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +++ ++FD  +   ++  RI  FNS  ++ +    GL E A R F  M    +   +  Y
Sbjct: 278 KKVVEIFDGMLSNGVQPDRIT-FNS--LLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTY 334

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++    K G+ + A   ++EM   N+ P   TY  +I  Y K    D+       MK 
Sbjct: 335 NTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKF 394

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G   D ++YN L+  +A  G  ++     K M    +     T  A+L  Y      D+
Sbjct: 395 LGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDE 454

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           + + ++ +   R          L +VY K  ++    ++  +      + ++V    L+ 
Sbjct: 455 VRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALID 514

Query: 358 HACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAY 393
             C   +  ++S V    EM    +R NV T N I+ A+
Sbjct: 515 ALC--KNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAF 551



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V  +++ +++ R+  N      +I +  + GL +EA+  F+E +   LK  + +Y+++I
Sbjct: 454 EVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALI 513

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
               K G    ++  L+EM +  + P   TY+ +I A+G+
Sbjct: 514 DALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGR 553


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 4/302 (1%)

Query: 129 WKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           W+  E+    N F    +I  LC+EG + EA      M+     P +  YNS+I GY K 
Sbjct: 183 WRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKC 242

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G+  E    + EM+     P   TY+ L+  + K+   +        MK +G   + +T+
Sbjct: 243 GELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTF 302

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           +  +  F   G+++     +  M  K M     T   ++D     G LD        ++ 
Sbjct: 303 STFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQ 362

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHR 365
              PL       L +   K    +  +D+   L  R G    EL++   +  H    +  
Sbjct: 363 QGVPLNVVTYTVLVDGLCKEGKVAEAEDVF-RLMERAGIRANELLYTTLIHGHFVYKNSE 421

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
              S++ EM+   +  +V+    ++     ++     + LL+++    +KP+ V    + 
Sbjct: 422 RALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIM 481

Query: 426 DA 427
           DA
Sbjct: 482 DA 483



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 121/291 (41%), Gaps = 11/291 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      I+  L  E   E A R F+++      P++  +N +I    K G   EA   L
Sbjct: 162 NTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARALL 217

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             MK +  SP   TY+ LI  YGK    +E++  +  M+  GC PD +TYN L+  F   
Sbjct: 218 ARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKF 277

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G ++R    +  M  + +     T    +DA+   GM+ +  K + ++        E   
Sbjct: 278 GRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTY 337

Query: 318 RKLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVRE 373
             L +   K     RLDD   L +++  +     +V    L+   C        + V R 
Sbjct: 338 TCLVDGTCKA---GRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRL 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           ME A +R N      ++  +   K+ +    LLSE+  + ++ D+   G L
Sbjct: 395 MERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGAL 445



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 71/171 (41%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A+    EM+   ++  + +Y ++I G   + K +EA   LN+M E  L P +  Y  +
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNI 480

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + A  K +   E    L+ M   G  P+ +TY  L+     AG +      +  M+   +
Sbjct: 481 MDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGL 540

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
                   A++D     G LDK       +++    L   +   L + ++K
Sbjct: 541 EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLK 591



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC    ++EA     +M+   LKP+  IY +I+    K  K +EA+  L +M +    P 
Sbjct: 449 LCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPN 508

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY  L+    K    DE I    KM+ L G  P+   Y  L+      G L +     
Sbjct: 509 IVTYCALVDGLCKAGSIDEAISHFNKMVDL-GLEPNVQAYTALVDGLCKNGRLDKAVLLL 567

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             M+ K M L +    +++D ++  G L        +++NS
Sbjct: 568 DEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINS 608



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 35/153 (22%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  LC+ G ++EA+  F +M    L+P+++ Y +++ G  K G+ ++A+L
Sbjct: 506 RPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVL 565

Query: 196 FLNEM---------------------------------KEMNLSPQSD--TYDGLIQAYG 220
            L+EM                                 K +N   Q D   Y   +  + 
Sbjct: 566 LLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFC 625

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
              M  E    L  M  +G +PD + YN LI +
Sbjct: 626 NLNMIQEAREVLSEMIENGITPDAVVYNCLINK 658



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 1/156 (0%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA+   Q+M     +P++  Y +++ G  K G  +EA+   N+M ++ L P    Y  L+
Sbjct: 492 EAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALV 551

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
               K    D+  + L  M   G S D++    L+      G L+        M+   + 
Sbjct: 552 DGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQ 611

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
           L        +  + N  M+ +  +    ++ N  TP
Sbjct: 612 LDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITP 647


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 146/342 (42%), Gaps = 18/342 (5%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGML 149
           L IL+ D   +K  +   I+    + +   + +  +++  ++  RI+   F    +I  L
Sbjct: 541 LNILESDFRPSKFMYGKAIQ---AAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGL 597

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   M++A + F EM    L PSL  YN++I GY K G   ++      MK  N+ P  
Sbjct: 598 CKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSL 657

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T++ L++   K  M ++ +  L  MK  G  PD  T+++L   ++         G Y++
Sbjct: 658 ITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYET 717

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
            +   + + + T   +L+A    G ++K E+   R +       E L   + + Y     
Sbjct: 718 AVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGY----- 772

Query: 330 FSRLDDLGD-----DLASRIGRTE--LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            SR  DL       D   + G     L +   + +   L      +  V +M+   V  +
Sbjct: 773 -SRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPS 831

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V T NI++  Y +  +F     LL E+      P++V+ G L
Sbjct: 832 VETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTL 873



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 158/398 (39%), Gaps = 62/398 (15%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I   CE G ME A +   +M+   + PS+E YN +I GY +  +F++    L EM++  
Sbjct: 803  LIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNG 862

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
              P   +Y  LI    K     E  +  + M+  G SP+   YN+LI      G ++   
Sbjct: 863  TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAF 922

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-------- 316
               + M  K + L   T   ++D     G L + E     +  SR  LK D+        
Sbjct: 923  RFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEI--SRKGLKPDVFTYNSLIS 980

Query: 317  -------VRKLAEVY-----------IKNY--MFSRLDDLGDDLASRI-GRTELVWCLRL 355
                   V++   +Y           +K Y  + S     G +L  +I G   L   L +
Sbjct: 981  GYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELTKKIFGEMSLQPDLLV 1040

Query: 356  LSHA--CLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
             +    C   H  +D   ++ ++M    +  + TT N ++L  LK+     +R L+ E+ 
Sbjct: 1041 YNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMK 1100

Query: 411  TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR 470
             R ++P+  T  I+        D  GA  +W R                  +  KG  L 
Sbjct: 1101 AREMEPEADTYDIIVKGHCEMKDYMGAY-VWYR-----------------EMQEKGLLLD 1142

Query: 471  YC--EEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506
             C  +E+ S L      K+ W  +   +++ + NG+ L
Sbjct: 1143 VCIGDELVSGL------KEEWRSKEAENVISEMNGRKL 1174



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 135/321 (42%), Gaps = 5/321 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++Q     +++ NI +S  R ++F   K I    +   + + +  F  M+   + P++ 
Sbjct: 529 KTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVF 588

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           IYN +I G  K+ +  +A    +EM    L P   TY+ LI  Y K    ++     + M
Sbjct: 589 IYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERM 648

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           K D   P  IT+N L++    AG+++  E     M  +     + T   + D Y +    
Sbjct: 649 KADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKA 708

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-LGDDLASRIGRTELVWCLR 354
           D     Y+  ++S   +       L     K     + ++ LG ++A  +   E+++   
Sbjct: 709 DAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTM 768

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +  ++      G    +  ME   ++ +    N ++  + ++ D ++    ++++  + V
Sbjct: 769 IDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGV 828

Query: 415 KPDIVTIGILYD--ARRIGFD 433
            P + T  IL     R+  FD
Sbjct: 829 SPSVETYNILIGGYGRKYEFD 849



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ME   +KP    YN +I  + ++G    A   +N+MK   +SP  +TY+ LI  YG+   
Sbjct: 788 MEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYE 847

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +D+    LK M+ +G  P+ ++Y  LI
Sbjct: 848 FDKCFDLLKEMEDNGTMPNVVSYGTLI 874


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 136/314 (43%), Gaps = 7/314 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+L + G +++A++ F++M+   L P   IY  +I G+ + G  +EAL   +EM E  
Sbjct: 243 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 302

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ ++    K KM  E D     M   G  PD  T+  LI  ++  G + +  
Sbjct: 303 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 362

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+ + +     T   ++D +     ++K+ + +  +++ R          L   Y
Sbjct: 363 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 422

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREMESAKVRWNV 383
                 S    L D++  +     ++ C  ++   C   +    D  +  M    +  + 
Sbjct: 423 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 482

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T N ++  ++K ++      L++++    + PD++T  ++ +    GF   G ++  + 
Sbjct: 483 ITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN----GFSRQGRMQEAEL 538

Query: 444 IGFLFKTVEINTDP 457
           I  + K +E   +P
Sbjct: 539 I--MLKMIERGVNP 550



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 17/374 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +GL+EEA      M G  LKP +  YN+II+G  K GK+  A   L+EM ++ 
Sbjct: 138 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 197

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP + TY+ L+    +     + +     M   G  PD ++++ LI   +  G L +  
Sbjct: 198 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 257

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M    +   +     ++  +   G++ +  K    +L     L       +    
Sbjct: 258 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 317

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNV 383
            K  M S  D+L  ++  R    +      L++      +      + EM   + ++ +V
Sbjct: 318 CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDV 377

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALE 439
            T N ++  + K  + + +  L +++ +R + P+ ++ GIL +    G+   G    A  
Sbjct: 378 VTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN----GYCNMGCVSEAFR 433

Query: 440 MWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           +W  +   GF    +  NT   ++  Y +       +E  S++          TY  LI+
Sbjct: 434 LWDEMVEKGFEATIITCNT---IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 490

Query: 497 LVIKHNGKNLDGTF 510
             IK   +N+D  F
Sbjct: 491 GFIKE--ENMDRAF 502



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 7/321 (2%)

Query: 126 FDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +++++ + +S  ++N +    +I  LC+   +E       +ME   + P +  YN++I+ 
Sbjct: 82  WEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINA 141

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y + G   EA   ++ M    L P   TY+ +I    K   Y      L  M   G SPD
Sbjct: 142 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             TYN+L+ E      +   E  +  M ++ +     +  A++      G LD+  K+++
Sbjct: 202 TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 261

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--- 360
            + N+       +   L   + +N + S    + D++  +    ++V    +L+  C   
Sbjct: 262 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEK 321

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +LS    D +  EM    V  +  T   ++  Y K  +      L   +  R++KPD+VT
Sbjct: 322 MLSEA--DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 421 IGILYDARRIGFDGTGALEMW 441
              L D    G +     E+W
Sbjct: 380 YNTLIDGFCKGSEMEKVNELW 400



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +  ++ +V ++W ++   RI  N  +   +I   C  G + EA R + EM     + ++ 
Sbjct: 389 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 448

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N+I+ GY + G   +A  FL+ M    + P   TY+ LI  + K +  D     +  M
Sbjct: 449 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 508

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
           +  G  PD ITYN+++  F+  G ++  E     M+ + ++   ST  ++++ ++
Sbjct: 509 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 563



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 122 IPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK---PSLEI 176
           + + F +W   +EK           I+   C  G    AV+A + +    LK   P    
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG---NAVKADEFLSNMLLKGIVPDGIT 484

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++I+G+ K    + A   +N+M+   L P   TY+ ++  + +     E ++ +  M 
Sbjct: 485 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 544

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             G +PD  TY  LI        LK     +  ML +
Sbjct: 545 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 581



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 7/154 (4%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + E   AF+ ++   L  S+   NS++ G  K+G  + A     E+    +     T + 
Sbjct: 43  LREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNI 102

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I A  K +  +     L  M+  G  PD +TYN LI  +   GLL+       SM  K 
Sbjct: 103 MINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKG 162

Query: 275 MHLRSSTMVAILDAYMNF-------GMLDKMEKF 301
           +     T  AI++            G+LD+M K 
Sbjct: 163 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 196


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 5/190 (2%)

Query: 124 QVFDMWK---NIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +V D WK    +E++ +  NEF    +I   C+ G ++ A++ ++ M    ++P++ +Y+
Sbjct: 238 RVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYS 297

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G +  GK  EA L   EM +   +P   TY  +IQ Y K           + M   
Sbjct: 298 AMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGA 357

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC P+ ++Y++LI      G LK     +K ML +     +    +++      GM+D  
Sbjct: 358 GCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGG 417

Query: 299 EKFYKRLLNS 308
            + +  +L S
Sbjct: 418 LRLFYDMLAS 427



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S +I     +W+ +  S  R N      +IG L   G M EA   F+EM      P++ 
Sbjct: 270 KSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNII 329

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y S+I GY KIG  + AL    EM      P + +Y  LI          +  M  K M
Sbjct: 330 TYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHM 389

Query: 236 KLDGCSPDHITYNLLIQEFACAGLL 260
              GC+PD I Y  +I+    +G++
Sbjct: 390 LDRGCAPDTIAYTSMIKGLCVSGMV 414



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L   G +++A +  +EME   L  +  +Y+++I G+ K G+ + AL     M    
Sbjct: 229 VVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASP 288

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y  +I     +    E ++  + M    C+P+ ITY  +IQ +   G   R  
Sbjct: 289 VRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRAL 348

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             ++ M+       + +   +++   N G L      +K +L+
Sbjct: 349 SVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLD 391



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 128/305 (41%), Gaps = 24/305 (7%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A + F+ M+     P+   YN ++HG    G+   A+  +  M+   + P   TY
Sbjct: 167 GDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTY 226

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             ++    +     +     + M+ +G + +   Y+ +I  F  +G +      +++M+ 
Sbjct: 227 GAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVA 286

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +        A++    NFG + + E  ++ +++S+          + + Y K    SR
Sbjct: 287 SPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSR 346

Query: 333 LDDLGDDLASRIGRTELVWCL-RLLSHACLLSHRGIDSVVREMESAKVRWN--------- 382
              + +++   IG      C+   +S++ L++  G+ +V R ++ A + W          
Sbjct: 347 ALSVWEEM---IGAG----CMPNAVSYSILIN--GLCNVGR-LKDAMMVWKHMLDRGCAP 396

Query: 383 ---VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
                T+ I  L    M D   LR+    L + H  PD+++  +L D   +  D   A++
Sbjct: 397 DTIAYTSMIKGLCVSGMVD-GGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD 455

Query: 440 MWKRI 444
           +  R+
Sbjct: 456 LLNRM 460



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LF 196
           N  +   +I  LC  G +++A+  ++ M      P    Y S+I G    G  +  L LF
Sbjct: 362 NAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLF 421

Query: 197 LNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            + +   +  P   +Y    DGL+ A    +  D ++  L      GC PD +T N+ ++
Sbjct: 422 YDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLD----QGCDPDTVTCNIFLR 477

Query: 253 EFACAGLLKR--MEGTYKSMLTKRMHLRSSTMVAILDA 288
           EF       R  +EG    +  +R ++ +  ++ ++ A
Sbjct: 478 EFGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLA 515


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 1/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G    AVR   EME     P++  Y++++H + + G +++A   L++M     S  
Sbjct: 361 LCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMN 420

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           S  Y+G+I A GK    DE    ++ MK  GC PD  TYN +I        +   E  + 
Sbjct: 421 SQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFG 480

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           ++L + +     T   ++ A ++ G   +  +    ++    PL       L +   K  
Sbjct: 481 NLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEG 540

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              R   L +++ ++  +        L++  C     R    + +EM +  +  ++ T N
Sbjct: 541 NVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYN 600

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    K+        LL +LP  +V PDIVT  IL
Sbjct: 601 TLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNIL 637



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 89  SCPLQILQHDGDWTKDHFWAVIRFL---KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145
            CPL ++ ++G         +I+ L    N  RS  + +   M K I+    N F+   +
Sbjct: 521 GCPLDVVSYNG---------LIKALCKEGNVDRSMMLLEEM-MTKGIKP---NNFSYNML 567

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  LC+ G + +A+   +EM    L P +  YN++I+G  K+G  + AL  L ++   N+
Sbjct: 568 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 627

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            P   TY+ LI  + K ++ D+  M L      G  P+  T+ +++Q F
Sbjct: 628 HPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNF 676



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 31/286 (10%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G   +A+   + M      P   +Y ++IH     G   EA   L+EM  M  +  
Sbjct: 190 LCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK-RMEGTY 267
            +T++ ++          E    +  M + GC+P  +TY  L++     GL + R     
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLR-----GLCRTRQADEA 304

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            +ML +   +    +  ++   +  G L +  + Y+ + +   P          +V+  N
Sbjct: 305 YAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP---------PDVHTYN 355

Query: 328 YMFSRLDDLG---------DDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREM 374
            +   L  LG         D++  +     +V    LL   C     G+     +++ +M
Sbjct: 356 ILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFC---RNGMWDDARAMLDQM 412

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +     N    N I+ A  K         L+ E+ ++  KPDI T
Sbjct: 413 SAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICT 458



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L   G  +E +R   EM        +  YN +I    K G  + +++ L
Sbjct: 490 NGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLL 549

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            EM    + P + +Y+ LI    K  K+ D +++  +M+   G +PD +TYN LI     
Sbjct: 550 EEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLN-QGLTPDIVTYNTLINGLCK 608

Query: 257 AG 258
            G
Sbjct: 609 VG 610


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+EG +E A++   EM    + P++  Y+ II+     G    A     +M    
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 205 LSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
                 T+  LI+  + + K+Y+ +D+  K+M  DGC P+ + YN LI      G L+  
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDL-WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
                 M         +T   ++D +   G L    + + R+++            + +V
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 324 YIKNYMFSRLDDLGDDLA----------------SRIGRTELVWCLRLL----SHACLLS 363
             KN MF + + L + +                    G   + W ++LL     H CL  
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLP- 487

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG- 422
                             N+TT N +L A  +M  ++    L  E+  R+++P++VT   
Sbjct: 488 ------------------NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 423 ILYDARRIGFDGTGALEMWKR 443
           +LY   R G  G  AL+++ +
Sbjct: 530 VLYGFSRAGMMGE-ALQLFGK 549



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 124 QVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +  D+WK +  +    N      +I  LC  G +EEA++   +M+     P++  Y+ +I
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            G++K G    A    N M      P   TY  ++    K  M+D+ +  ++ M L+GC+
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 242 PDHITYNLLIQEFACAG-------LLKRMEG 265
           P+ IT+N  I+     G       LL+RM+G
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQG 482



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N       I  LC  G +E A++  + M+G    P++  YN ++    ++ K+ 
Sbjct: 447 LEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYE 506

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA     E++  NL P   TY+ ++  + +  M  E         + G +PD ITYN +I
Sbjct: 507 EAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566

Query: 252 QEFACAGLLK 261
             +   G +K
Sbjct: 567 HAYCKQGKVK 576



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 150/386 (38%), Gaps = 41/386 (10%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A++ F  +  F  KP++ IYN ++       KF         MK+  L P   TY
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---KRMEGTYKS 269
           + L++A  K    D        M   GC PD +TY  ++     AG +   + + G +K 
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP 242

Query: 270 MLTKRMHL--------RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRK 319
            +     L        R    + +L   M+ G +D     Y  ++NS   +   E     
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNG-VDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 320 LAEVYIKN---------------YMFSRLDDLGD--DLASRIGRTELVWCLRLLSHACLL 362
            A+++++                +M  +L +  D   L  + G    V     L H  L 
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG-LC 360

Query: 363 SHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           S+  ++    V  +M+ +    NVTT +I++  + K  D        + + +   +P++V
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 420 TIGILYD--ARRIGFDGTGAL-EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           T   + D   +   FD   +L E     G    T+  NT   +  + G G  + +  ++ 
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNT--FIKGLCGNGR-VEWAMKLL 477

Query: 477 SSLEPYSREKKRWTYQNLIDLVIKHN 502
             ++ +       TY  L+D + + N
Sbjct: 478 ERMQGHGCLPNITTYNELLDALFRMN 503



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 72/170 (42%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++ +LC+  + ++A    ++M      P+   +N+ I G    G+   A+ 
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L  M+     P   TY+ L+ A  +   Y+E     + ++     P+ +TYN ++  F+
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            AG++      +   L +     S T   ++ AY   G +    +  +R+
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 127/369 (34%), Gaps = 40/369 (10%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFA 169
           LK     R +  V   +  I  S   +  +     +I  L  E  M+      Q+M+   
Sbjct: 45  LKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDG 104

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +    +++  II+GY ++G   +AL     + E    P    Y+ L+ A      +  I+
Sbjct: 105 INCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMIN 164

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                MK DG  P+  TYN+L++       +      +  M  K     + T   ++ + 
Sbjct: 165 PLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-----EVYIKNYMFSRLDDLGDDLA--- 341
              G +D   +   R   S  P+   L+  +      EV IK  +   + D G D     
Sbjct: 225 CKAGKIDDARELAGRFKPS-VPVYNALIDGMCKEGRIEVAIK--LLGEMMDNGVDPNVVS 281

Query: 342 --------SRIGRTELVWCL--RLLSHACLLSHRGIDSVVR------EMESAKVRW---- 381
                      G  EL + L  ++    C  +      +++      ++  A   W    
Sbjct: 282 YSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341

Query: 382 ------NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
                 NV   N ++         +    +  ++      P++ T  IL D      D  
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLV 401

Query: 436 GALEMWKRI 444
           GA E W R+
Sbjct: 402 GASETWNRM 410



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R  +  + F +++ IE   +  N      ++      G+M EA++ F +       P   
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            YN++IH Y K GK   A   +  +  M    P   TY  LI     +   +E    L  
Sbjct: 561 TYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDK 620

Query: 235 MKLDGCSPDHITYNLLIQEF 254
               G  P+  T+N L++ F
Sbjct: 621 AINQGICPNFATWNALVRCF 640


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 15/271 (5%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R F+++      P++  +N +I    K G+  EA    + MKEM   P   T++ LI  Y
Sbjct: 178 RLFEQLPA----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           GK    DE++  ++ M+  GC  D +TYN LI  F   G ++   G + +M  + +    
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---L 336
            T    +DA+   G++ +  K + ++      L E     L +   K     RLDD   L
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA---GRLDDAIVL 350

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGI---DSVVREMESAKVRWNVTTANIILLAY 393
            D++  +     +V    L+   C    R +   + V+R ME A VR N      ++  +
Sbjct: 351 LDEMVRQGVPLNVVTYTVLVDGLC--KERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              K+ +    LLSE+  + ++ DI   G L
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGAL 439



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 37/228 (16%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEF-------------NSQKIIGMLCE----------- 151
           + R++ +  D+ + +EK+  R NE              NS+K +G+L E           
Sbjct: 375 KERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDIS 434

Query: 152 ------EGL-----MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
                 +GL     ++EA     +M+   L+P+  IY +++    K GK  EA+  L ++
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKI 494

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            +    P   TY  LI    K    DE       M+  G  P+   Y  L+      G L
Sbjct: 495 LDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL 554

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                 +  M+ K M L      A+LD Y+  G L        ++++S
Sbjct: 555 NEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS 602



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 63/157 (40%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G + EA+   Q++     +P++  Y ++I G  K G  +EA+   N+M+++ L P   
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y  L+    K    +E       M   G S D + Y  L+  +   G L         M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           +   + L        +  + N  M+ +  + +  ++ 
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIG 636



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      ++  LC+E  + EA    + ME   ++ +  +Y ++IHG+       +AL  
Sbjct: 361 LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGL 420

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EMK   L      Y  LIQ        DE    L  M   G  P++I Y  ++     
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +G +       + +L         T  A++D     G +D+    + ++
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 137 INEFNSQKIIGM-------------LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           I+ FN  + +G+             LC+ G + EAV+ F EM    +     +Y +++ G
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y K G  ++A     +M +  L      Y   I  +    M  E       M   G +PD
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 244 HITYNLLIQEF 254
              YN LI ++
Sbjct: 643 RAVYNCLISKY 653



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           I   C   +M EA   F EM G  + P   +YN +I  Y K+G   EA+   +EM+ +
Sbjct: 615 ISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+EG +E A++   EM    + P++  Y+ II+     G    A     +M    
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 205 LSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
                 T+  LI+  + + K+Y+ +D+  K+M  DGC P+ + YN LI      G L+  
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDL-WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
                 M         +T   ++D +   G L    + + R+++            + +V
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 324 YIKNYMFSRLDDLGDDLA----------------SRIGRTELVWCLRLL----SHACLLS 363
             KN MF + + L + +                    G   + W ++LL     H CL  
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLP- 487

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG- 422
                             N+TT N +L A  +M  ++    L  E+  R+++P++VT   
Sbjct: 488 ------------------NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 423 ILYDARRIGFDGTGALEMWKR 443
           +LY   R G  G  AL+++ +
Sbjct: 530 VLYGFSRAGMMGE-ALQLFGK 549



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 124 QVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +  D+WK +  +    N      +I  LC  G +EEA++   +M+     P++  Y+ +I
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            G++K G    A    N M      P   TY  ++    K  M+D+ +  ++ M L+GC+
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 242 PDHITYNLLIQEFACAG-------LLKRMEG 265
           P+ +T+N  I+     G       LL+RM+G
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQG 482



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N       I  LC  G +E A++  + M+G    P++  YN ++    ++ K+ 
Sbjct: 447 LEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYE 506

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA     E++  NL P   TY+ ++  + +  M  E         + G +PD ITYN +I
Sbjct: 507 EAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566

Query: 252 QEFACAGLLK 261
             +   G +K
Sbjct: 567 HAYCKQGKVK 576



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A++ F  +  F  KP++ IYN ++       KF         MK+  L P   TY
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---KRMEGTYK 268
           + L++A  K    D        M   GC PD +TY  ++     AG +   + + G +K
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 72/170 (42%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++ +LC+  + ++A    ++M      P+   +N+ I G    G+   A+ 
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L  M+     P   TY+ L+ A  +   Y+E     + ++     P+ +TYN ++  F+
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            AG++      +   L +     S T   ++ AY   G +    +  +R+
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 127/369 (34%), Gaps = 40/369 (10%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFA 169
           LK     R +  V   +  I  S   +  +     +I  L  E  M+      Q+M+   
Sbjct: 45  LKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDG 104

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +    +++  II+GY ++G   +AL     + E    P    Y+ L+ A      +  I+
Sbjct: 105 INCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMIN 164

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                MK DG  P+  TYN+L++       +      +  M  K     + T   ++ + 
Sbjct: 165 PLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-----EVYIKNYMFSRLDDLGDDLA--- 341
              G +D   +   R   S  P+   L+  +      EV IK  +   + D G D     
Sbjct: 225 CKAGKIDDARELAGRFKPS-VPVYNALIDGMCKEGRIEVAIK--LLGEMMDNGVDPNVVS 281

Query: 342 --------SRIGRTELVWCL--RLLSHACLLSHRGIDSVVR------EMESAKVRW---- 381
                      G  EL + L  ++    C  +      +++      ++  A   W    
Sbjct: 282 YSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341

Query: 382 ------NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
                 NV   N ++         +    +  ++      P++ T  IL D      D  
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLV 401

Query: 436 GALEMWKRI 444
           GA E W R+
Sbjct: 402 GASETWNRM 410



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R  +  + F +++ IE   +  N      ++      G+M EA++ F +       P   
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            YN++IH Y K GK   A   +  +  M    P   TY  LI     +   +E    L  
Sbjct: 561 TYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDK 620

Query: 235 MKLDGCSPDHITYNLLIQEF 254
               G  P+  T+N L++ F
Sbjct: 621 AINQGICPNFATWNALVRCF 640


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 48/337 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F  + +I  LC EG    A+  F E  G  +KP++ +YN++I G S  G   EA    
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEM E  L P+  T++ L+    K     + D  +K+M   G  PD  T+N+LI  ++  
Sbjct: 415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS-- 472

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKED 315
                              L+    + ILD  ++ G +D     Y  LLN   +T   ED
Sbjct: 473 -----------------TQLKMENALEILDVMLDNG-VDPDVYTYNSLLNGLCKTSKFED 514

Query: 316 LV---RKLAEVYIKNYMFS------------RLDD---LGDDLASRIGRTELVWCLRLLS 357
           ++   + + E      +F+            +LD+   L +++ ++    + V    L+ 
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 358 HACLLSH-RGIDSVVREMESA-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
             C      G  ++ R+ME A KV  +  T NII+ A+ +  +      L  E+  R + 
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634

Query: 416 PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
           PD  T  ++ D    GF  TG + +  +  FL + +E
Sbjct: 635 PDGYTYRLMVD----GFCKTGNVNLGYK--FLLEMME 665



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 3/285 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ FN  K++ +LC++G ++E  +   ++    + P+L  YN  I G  + G+ + A+  
Sbjct: 216 LSTFN--KLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRM 273

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           +  + E    P   TY+ LI    K   + E ++ L  M  +G  PD  TYN LI  +  
Sbjct: 274 VGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK 333

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G+++  E      +         T  +++D   + G  ++    +   L         L
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREME 375
              L +      M      L ++++ +    E+     L++  C +      D +V+ M 
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           S     ++ T NI++  Y      ++   +L  +    V PD+ T
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 38/293 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G ++EAV  F+ M+ +  +P++  YN+I+      G F++A      M++  ++P   +
Sbjct: 89  KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYS 148

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           +   ++++ K          L  M   GC  + + Y  ++  F            +  ML
Sbjct: 149 FTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKML 208

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              + L  ST   +L                 R+L  +  +KE    KL +  IK  +  
Sbjct: 209 ASGVSLCLSTFNKLL-----------------RVLCKKGDVKE--CEKLLDKVIKRGVLP 249

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            L      +     R EL   +R++   CL+                 + +V T N ++ 
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMV--GCLIEQ-------------GPKPDVITYNNLIY 294

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              K   F+   V L ++    ++PD  T    Y+    G+   G +++ +RI
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYT----YNTLIAGYCKGGMVQLAERI 343


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG  +EA +   EM    + P   IY++ IHGY K GK + A+  L +M++  
Sbjct: 520 LISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKG 579

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            +P + TY+ LI+ + +    DEI   +  M+  G SP+ +TYN LI+ F   G+L R
Sbjct: 580 CNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQGMLTR 637



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R+L    R+ ++ +  ++ + +   RI  N +    I+  LC+EG   +A R    +   
Sbjct: 321 RWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSG 380

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P +  Y S++H Y   G    A   L+EM +   +P S TY+ L+Q+  +     E 
Sbjct: 381 VMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEA 440

Query: 229 DMCLKMMKLDGCSPDHITYNLLI 251
           +  L+ M   G S D    N++I
Sbjct: 441 ERLLERMSEKGYSLDTAGCNIII 463



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  +N  + +  L   G + EA    +EM    + P+   YN I+ G  K GK  +A  
Sbjct: 315 RVESYN--RWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARR 372

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N ++   +SP   TY  L+ AY         +  L  M   GC+P+  TYN+L+Q   
Sbjct: 373 VENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLW 432

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            AG     E   + M  K   L ++    I+D       LD
Sbjct: 433 RAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLD 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALK------------PSLEIYNSIIHGYSKIG 188
           NS+  + M   +G+ EE   A   +    L             P    Y+ +I    K G
Sbjct: 469 NSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEG 528

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           +F+EA   L EM   ++SP S  YD  I  Y K+         L+ M+  GC+P   TYN
Sbjct: 529 RFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYN 588

Query: 249 LLIQEF 254
           LLI+ F
Sbjct: 589 LLIRGF 594



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 118/282 (41%), Gaps = 47/282 (16%)

Query: 50  LSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKV--------------SC----P 91
           LSSA SL     + T+ L      H A  AL+ RL++ +              SC    P
Sbjct: 31  LSSAASLP--PPRCTSFLARLVAAHPAAGALLPRLHRHILSFPDPCPHLLALLSCSDILP 88

Query: 92  LQI-------LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNS 142
           L++       L+              R +  + R  ++  V  ++K++    ++ + F  
Sbjct: 89  LRLAIPAFRSLRALASAPPPPTPVYNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTR 148

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC+ G ME A R F+ M    ++     +  +  GY + G+  +AL  L+ M  
Sbjct: 149 NLLLRALCDAGRMELAQRVFEAMP---VRNEFS-FGILARGYCRAGRSVDALKVLDGMPS 204

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---- 258
           MNL       + ++  + K  + +E +  ++ M++ G +P+ +T+N  I     AG    
Sbjct: 205 MNLV----VCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLD 260

Query: 259 ---LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              + K M+  ++  L +   +   T   +L  + + G +D+
Sbjct: 261 AYRIFKDMQEDWQHGLPRPDQV---TFDVMLSGFCDAGFVDE 299



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           ++   C+EGL+EEA R  + M    L P++  +NS I    K G+  +A     +M+E  
Sbjct: 213 VVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDW 272

Query: 203 MNLSPQSD--TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            +  P+ D  T+D ++  +      DE  + + +M+  G      +YN  +      G +
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRV 332

Query: 261 KRMEGTYKSMLTKRMHLRSST 281
                  + M  +R+H  S T
Sbjct: 333 GEAHELLREMAHERIHPNSYT 353



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 64/170 (37%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R ++     ++   C+ G ++EA      M        +E YN  + G  + G+  EA  
Sbjct: 278 RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHE 337

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EM    + P S TY+ ++    K     +       ++    SPD +TY  L+  + 
Sbjct: 338 LLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYC 397

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             G +         M  K     S T   +L +    G   + E+  +R+
Sbjct: 398 SKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERM 447


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 90/182 (49%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NE+    +I  LC+EG   +A+  ++EM G    P+  +Y+++I G  + GK +EA  
Sbjct: 342 RGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARG 401

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           FL+EMK     P S TY  L++ Y +     +  +  K M  + C  + + Y++LI    
Sbjct: 402 FLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLC 461

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G        +K ML++ + L      +++  + N  ++++  K + ++L     ++ D
Sbjct: 462 KDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPD 521

Query: 316 LV 317
           ++
Sbjct: 522 VI 523



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 128 MWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHG 183
           MW   + K  +  FNS  ++ ++ +EGL   A+  +  +   +   + P+   +N +I  
Sbjct: 122 MWGEFQCKQTVKSFNS--VLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKA 179

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             ++G  ++A+    E+   N +P + TY  L+    K +  DE    L  M+++G  P+
Sbjct: 180 MCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPN 239

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            + +N+LI      G L R      +M  K       T  A++      G L+K      
Sbjct: 240 LVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLN 299

Query: 304 RLLNSR 309
           ++++++
Sbjct: 300 QMVSNK 305



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 114/296 (38%), Gaps = 5/296 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     ++  LC +G +E+AV    +M      P+   + ++I+G+   G+ ++    L
Sbjct: 274 NEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVL 333

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             ++          Y  LI    K   +++     K M   GC P+ I Y+ LI      
Sbjct: 334 VSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCRE 393

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L    G    M  K     S T  +++  Y   G   K    +K + N+     E   
Sbjct: 394 GKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCY 453

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--LLSHRGIDSVVREM- 374
             L     K+  F     +   + SR  + ++V    ++   C   L  +G+  +  +M 
Sbjct: 454 SILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGL-KLFNQML 512

Query: 375 -ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
            +   V+ +V T NI+L A+   K       +L+ +  +   PD +T  I     R
Sbjct: 513 CQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLR 568



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+E  ++EAV    EM+     P+L  +N +I    K G    A   ++ M      P 
Sbjct: 215 LCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPN 274

Query: 209 SDTYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             TY+ L+     K K+   + + L  M  + C P+ +T+  LI  F   G
Sbjct: 275 EVTYNALVHGLCLKGKLEKAVSL-LNQMVSNKCVPNDVTFGTLINGFVMQG 324


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 1/178 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+  K I   + N      ++     EGL E+A   F+EM+    +P +  YN+++  
Sbjct: 291 KVFNEMKTI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 349

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           YS+ G    A    + M+ M   P   +Y+ L+ AYG+  ++ E +   + +K  G  P 
Sbjct: 350 YSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPT 409

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
             ++ LL+   A +G + R E     +    +   +  + A+L+AY   G LD ME+ 
Sbjct: 410 MKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERL 467



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 74/151 (49%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +++ F EM+    KP++  Y ++++ +++ G   +A     EM++    P    Y+ L++
Sbjct: 289 SLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALME 348

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY +  +         +M+  GC PD  +YN+L+  +  AGL +  E  ++ +  + M  
Sbjct: 349 AYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRP 408

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              + + +L A+   G + + E+   +L  S
Sbjct: 409 TMKSHMLLLSAHAKSGNVARCEEVMAQLHKS 439



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 61/145 (42%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM+   L P+  +YN+ + G  K     +A+     MK+      +
Sbjct: 211 CNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNT 270

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY  +I  YGK K           MK  GC P+  TY  L+  FA  GL ++ E  ++ 
Sbjct: 271 ETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 330

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGM 294
           M             A+++AY   G+
Sbjct: 331 MQQAGHEPDVYAYNALMEAYSRAGL 355



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 13/283 (4%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +  P    Y+ LI AYG+ +  ++ +     +    C P   TY LL++ +  +G L R 
Sbjct: 160 SFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRA 219

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           EG    M    +   ++   A LD  +     +K  + Y+R+   R     +    +  V
Sbjct: 220 EGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINV 279

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKV 379
           Y K         + +++ + IG    +     L +A   +  G+    + V  EM+ A  
Sbjct: 280 YGKAKQPMSSLKVFNEMKT-IGCKPNICTYTALVNA--FAREGLCEKAEEVFEEMQQAGH 336

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF--DGTG 436
             +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G   +   
Sbjct: 337 EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEA 396

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           A +  K+ G       + +  L+L+ + K   +  CEEV + L
Sbjct: 397 AFQELKQQGM---RPTMKSHMLLLSAHAKSGNVARCEEVMAQL 436



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 121 QIPQVFDMWKNIEKSRIN-EFNSQ-KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +IPQ  D+W +I    +    N Q + I  +CE  L   + R           P +  YN
Sbjct: 121 KIPQAHDLWDDIVNVAVQLRLNRQWEPIITVCEWILYRSSFR-----------PDIICYN 169

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I  Y +  + N+A      + E +  P  DTY  L++AY         +  +  M+ +
Sbjct: 170 LLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKN 229

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           G  P    YN  +     A   ++    Y+ M  +R    + T   +++ Y
Sbjct: 230 GLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVY 280



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 36/270 (13%)

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           I +C  ++      PD I YNLLI  +     L + E  Y ++L         T   +L 
Sbjct: 149 ITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLR 208

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           AY N G L + E     +  +  P         A VY      + LD L           
Sbjct: 209 AYCNSGQLHRAEGVISEMQKNGLP-------PTATVY-----NAYLDGL----------- 245

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                   L   C  S + ++ V + M+  + R N  T  +++  Y K K       + +
Sbjct: 246 --------LKARC--SEKAVE-VYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFN 294

Query: 408 ELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKG 466
           E+ T   KP+I T   L +A  R G     A E+++ +       ++     ++  Y + 
Sbjct: 295 EMKTIGCKPNICTYTALVNAFAREGL-CEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 353

Query: 467 HFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
              +   E++S +E    E  R +Y  L+D
Sbjct: 354 GLPQGASEIFSLMEHMGCEPDRASYNILVD 383


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 142/332 (42%), Gaps = 41/332 (12%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           L+  S+     +V + +K  +K  I  +E     ++  LC+ G +EEAV    EM+G  +
Sbjct: 366 LQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKM 425

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P +  Y ++I GY   GK  +AL    EMK++   P   TY+ L   + +  +  E   
Sbjct: 426 VPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALS 485

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            L  M+  G  PD +T+N++I+     G +   +  + ++  K +   S    A+++ Y 
Sbjct: 486 LLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLENYS----AMVNGYC 541

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
               ++K      RL             K   +  K   F  L +L  +     G +E  
Sbjct: 542 EANHVNKAFALLIRL------------SKQGRILKKASFFKLLGNLCSE-----GDSEKA 584

Query: 351 WCLRL------LSHACLLSHRGIDSVVR--EMESAKVRWN----------VTTANIILLA 392
            CL        ++   ++  + I ++ +  EME A+  +N          V T  I++  
Sbjct: 585 LCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMING 644

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           Y +M   K    +L ++  R ++PD++T  +L
Sbjct: 645 YCRMNKMKEAWHVLGDMKNRGIEPDVITYTVL 676



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 17/181 (9%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            K+IG L + G ME+A   F  +    L P +  Y  +I+GY ++ K  EA   L +MK 
Sbjct: 604 SKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKN 663

Query: 203 MNLSPQSDTYDGLIQAYGKY----------------KMYDEIDMCLKMMKLDGCSPDHIT 246
             + P   TY  L+    K                  M D   +  +M  +D   PD I 
Sbjct: 664 RGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMD-IKPDVIC 722

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y +LI +      ++     +  M+ + +   + T  A+L  Y N G + K    +  +L
Sbjct: 723 YTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEML 782

Query: 307 N 307
           N
Sbjct: 783 N 783



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/318 (18%), Positives = 130/318 (40%), Gaps = 5/318 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            SR++     +++ ++   +N  ++     I   C +G + EA+  F++ME   + P+  
Sbjct: 196 ESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSF 255

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y + I G    G+ +     L ++    +      Y  +I+ +       E +  L+ M
Sbjct: 256 SYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREM 315

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G +PD   Y  LI  +   G L +    +  M++K +      + +IL      GM 
Sbjct: 316 EKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMA 375

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
            ++   +K          E     + +   K        +L  ++  +    +++    +
Sbjct: 376 SEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTV 435

Query: 356 LSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           +S    L  + +D+  + REM+    + ++ T N++   + +    +    LL+ + T+ 
Sbjct: 436 IS-GYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQG 494

Query: 414 VKPDIVTIGILYDARRIG 431
           VKPD VT  ++ +   IG
Sbjct: 495 VKPDTVTHNMIIEGLCIG 512



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++G LC EG  E+A+   + M    + P++ +Y+ +I    + G+  +A    N + + 
Sbjct: 570 KLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDR 629

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            L+P   TY  +I  Y +     E    L  MK  G  PD ITY +L+ 
Sbjct: 630 GLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLN 678



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +++A+  F EM    L P    Y +++ GY  +G   +A++  +EM    + P +
Sbjct: 731 CKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDA 790

Query: 210 DT 211
            T
Sbjct: 791 HT 792



 Score = 38.1 bits (87), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
            M  +E +M+ +   + EM+   +KP +  Y  +I  + K     +A+   NEM +  L+
Sbjct: 694 AMKSKENMMDPSA-LWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLA 752

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           P + TY  L+  Y       +  +    M   G  PD  T ++L
Sbjct: 753 PDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 149/345 (43%), Gaps = 44/345 (12%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P   +YN +I  Y+K GK +EA+L  ++M++  L+P + TY  +I    K    ++ 
Sbjct: 336 GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDA 395

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            +  + M  +G SP +I YN LI         +R E     ML + + L +    +I+D+
Sbjct: 396 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 455

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           +   G + + EK +  ++  R  +K D++            +S L D G  LA ++    
Sbjct: 456 HCKEGRVIESEKLFDLMV--RIGVKPDII-----------TYSTLID-GYCLAGKMDEA- 500

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
               ++LLS                M S  ++ N  T   ++  Y K+       VL  E
Sbjct: 501 ----MKLLSG---------------MVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKE 541

Query: 409 LPTRHVKPDIVTIGI----LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG 464
           + +  V PDI+T  I    L+  RR       A E++ RI      +E++T  ++L    
Sbjct: 542 MESSGVSPDIITYNIILQGLFQTRRT----AAAKELYVRITESGTQIELSTYNIILHGLC 597

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK--HNGKNLD 507
           K         ++ +L     + +  T+  +ID ++K   NG+  D
Sbjct: 598 KNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKD 642



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA+  L+ 
Sbjct: 449 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSG 506

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M  + L P + TY  LI  Y K     +  +  K M+  G SPD ITYN+++Q     GL
Sbjct: 507 MVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQ-----GL 561

Query: 260 LKRMEGTYKSMLTKRMHLR 278
            +    T ++   K +++R
Sbjct: 562 FQ----TRRTAAAKELYVR 576



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+  F++M    L P   +YNS+IHG     K+  A   + EM +  
Sbjct: 382 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 441

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  PD ITY+ LI  +  AG +    
Sbjct: 442 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAM 501

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                M++  +   + T   +++ Y     +      +K + +S
Sbjct: 502 KLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESS 545



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG   +A   + EM    + P +  Y+SII    K    ++A+  L  M +  
Sbjct: 202 VINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNG 261

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI-----TYNLLIQEFACAGL 259
           + P   TY  ++  Y       E    LK ++ DG  PD +     TY  L+Q +A  G 
Sbjct: 262 VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGA 321

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L  M      M+   +H        ++ AY   G +D+    + ++
Sbjct: 322 LVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKM 367



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 8/167 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           F+   ++  LC+E   +EA+     M    G    P +  Y ++I+G+ K G   +A   
Sbjct: 159 FSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYST 218

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM +  +SP   TY  +I A  K +  D+    L  M  +G  P+  TY  ++  +  
Sbjct: 219 YHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCS 278

Query: 257 AGLLKRMEGTYKSMLTKRMHLRS-----STMVAILDAYMNFGMLDKM 298
           +G  K   G  K + +  +         +T   +L  Y   G L  M
Sbjct: 279 SGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGM 325


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 172/424 (40%), Gaps = 73/424 (17%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +  ++++ +    +  +N   ++ +LC  G +E+A + F EM   A  P +  Y  +IHG
Sbjct: 249 EAIELFQGLPDKNVCSYNI--LLKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHG 303

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKM-------- 234
           Y  +G+   A+  L++M    + P +  Y  ++     K ++ D + +   M        
Sbjct: 304 YCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILD 363

Query: 235 --------------------------MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
                                     M+  G + D +TY  LI     AG LK  E   +
Sbjct: 364 EAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQ 423

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--------SRTPLKEDLVRKL 320
            ML +R+ +   T   ++D Y   G + +  + +  ++         + T L + L ++ 
Sbjct: 424 EMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ- 482

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHACLLSHRGIDSVVR---EME 375
            +V   N +   + + G          EL  C    L++  C   +  +D  +R   +M+
Sbjct: 483 GDVQAANELLHEMSNKG---------LELNACTYNSLINGLCKAGY--LDQAMRTMADMD 531

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
           +A ++ +V T   ++ A  K  +      LL E+    +KP IVT  +L +    GF  +
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMN----GFCMS 587

Query: 436 GALEMWKRI--GFLFKTVEINTDPL--VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTY 491
           G +E  K++    L K +  N      ++  Y  G+ ++   E+Y  +   + E    TY
Sbjct: 588 GRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTY 647

Query: 492 QNLI 495
             LI
Sbjct: 648 NILI 651


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 127/305 (41%), Gaps = 6/305 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I+ +     I   C+ G ++EAV  F +M    + P++  YN++I G  K G+  EAL+F
Sbjct: 239 IDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMF 298

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
              M E  ++P   TY  L+    K++ +DE +  L  M   G SP+   +N LI  ++ 
Sbjct: 299 KGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSR 358

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +         M  K +   + T   +L  +     +++ E+  + LL++   + ED 
Sbjct: 359 KGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDA 418

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREM 374
              +  +  K+  F     +   L  R  +        L+   C        ID   R  
Sbjct: 419 CSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLA 478

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +   +  N TT+N +L    +  + + +  +  E+  R +  D    GI Y+    G   
Sbjct: 479 DKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLD----GISYNTLIFGCCK 534

Query: 435 TGALE 439
           +G +E
Sbjct: 535 SGKIE 539



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 6/306 (1%)

Query: 124 QVFDMWKNIEKSR---INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           +  D+W  +   +    N   S  ++  LCE G MEE     +EM    L      YN++
Sbjct: 469 EAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTL 528

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I G  K GK  EA     +M +    P + TY+ L++        D++   L   K  G 
Sbjct: 529 IFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGV 588

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            P+  TY L+++ +  A  +      +  ++  ++ L       ++ A+   G   +  K
Sbjct: 589 VPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFK 648

Query: 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHA 359
               + +S           +      N +      + +++ +  G    V+C   L+   
Sbjct: 649 LRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNE-GLMPNVFCYTALIGGY 707

Query: 360 CLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           C L     I+S+++EM S  ++ N  T  I++  Y KM + K    LL+E+    + PD 
Sbjct: 708 CKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDT 767

Query: 419 VTIGIL 424
           VT  +L
Sbjct: 768 VTYTVL 773



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++    + F +   +  S I+   F    II  +C   L+EEA   F+EM    L P++
Sbjct: 638 SKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNV 697

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y ++I GY K+G+ ++    L EM    + P   TY  +I  Y K     E    L  
Sbjct: 698 FCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNE 757

Query: 235 MKLDGCSPDHITYNLL 250
           M  +G SPD +TY +L
Sbjct: 758 MIANGISPDTVTYTVL 773



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +F+  +N E    N F    +IG  C+ G M++     QEM    ++P+   Y  +I GY
Sbjct: 684 IFEEMRN-EGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGY 742

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP-D 243
            K+G   EA   LNEM    +SP + TY  L + Y K    +E       ++ D   P +
Sbjct: 743 CKMGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEET------LQGDTAVPLE 796

Query: 244 HITYNLLIQEF 254
            ITY  L+ + 
Sbjct: 797 EITYTTLVDKL 807



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 57/145 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G   EA +    M    + P++  Y+SIIHG        EA     EM+   
Sbjct: 633 LIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEG 692

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P    Y  LI  Y K    D+I+  L+ M  +   P+ ITY ++I  +   G  K   
Sbjct: 693 LMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEAT 752

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
                M+   +   + T   +   Y
Sbjct: 753 KLLNEMIANGISPDTVTYTVLQKGY 777


>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 714

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 14/254 (5%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EE    F EM+   LKP+   +N ++  YS+  +       L EM++  L P + +Y  
Sbjct: 384 IEEVEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTC 443

Query: 215 LIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI AYG+  KM D        MK  G  P   +Y  LI  ++ +G  ++   T+++M T+
Sbjct: 444 LISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTE 503

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN--YMFS 331
            +     T  A+LDA+   G    + + +K +++ +          L + + K   Y+ +
Sbjct: 504 GIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHYVEA 563

Query: 332 RLDDLGDDLASRIGR-----TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
           R      D+ S  G+     T + + + + ++A    H  +  +++EM +  ++ +  T 
Sbjct: 564 R------DVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATLNLKPDSITY 617

Query: 387 NIILLAYLKMKDFK 400
             ++ AY++++DF+
Sbjct: 618 LTMIYAYIRVRDFR 631



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A   F+ M+   +KPS+E Y +++  + + G     +     M    +     T+
Sbjct: 488 GWHEKAYSTFENMQTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTF 547

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + L+  + K   Y E  D+  +  KL G  P  +TYN+L+  +A  G   ++    K M 
Sbjct: 548 NILLDGFAKQGHYVEARDVISEFGKL-GLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMA 606

Query: 272 TKRMHLRSSTMVAILDAYM 290
           T  +   S T + ++ AY+
Sbjct: 607 TLNLKPDSITYLTMIYAYI 625



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M + +E +R+  FN   ++    ++G   EA     E     L P++  YN +++ Y++ 
Sbjct: 536 MSEKVEGTRVT-FNI--LLDGFAKQGHYVEARDVISEFGKLGLHPTVMTYNMLMNAYARG 592

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G+ ++    L EM  +NL P S TY  +I AY + + +       K M   G  PD  +Y
Sbjct: 593 GQHSKLPQLLKEMATLNLKPDSITYLTMIYAYIRVRDFRRAFFYHKTMVKSGQVPDAKSY 652

Query: 248 NLL 250
             L
Sbjct: 653 EKL 655


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 31/288 (10%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L+ E++RA     GF  KP +  +NS+ +G+SK+   +E  +++  M +   SP   TY 
Sbjct: 112 LVLESLRASH---GFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKC-CSPNVVTYS 167

Query: 214 GLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
             I  + K     E+ + LK    MK D  SP+ +T+  LI  +  AG L+     YK M
Sbjct: 168 TWIDTFCKSG---ELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKNY 328
              RM L   T  A++D +   G + + E+ Y R++       ED V   + VY  I + 
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMV-------EDRVEPNSLVYTTIIDG 277

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRL--LSHACLLSH-------RGIDSVVREMESAKV 379
            F R D    D A +     L   +RL   ++  ++S        +    +V +ME + +
Sbjct: 278 FFQRGDS---DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL 334

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++     ++ AY K    K    +  +L  R  +PD+V +  + D 
Sbjct: 335 VPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDG 382



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 138/330 (41%), Gaps = 20/330 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + FNS  ++  +C+ G ++ A      M  F  +P +  YNS+I G+ + G    A L L
Sbjct: 57  SSFNS--VVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVL 114

Query: 198 NEMKEMN---LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++  +     P   +++ L   + K KM DE+ + + +M L  CSP+ +TY+  I  F
Sbjct: 115 ESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVM-LKCCSPNVVTYSTWIDTF 173

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             +G L+    ++ SM    +     T   ++D Y   G L+     YK +   R  L  
Sbjct: 174 CKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNV 233

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDS---- 369
                L + + K     R +++   +   R+    LV+   +         RG DS    
Sbjct: 234 VTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDG----FFQRG-DSDNAM 288

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
             + +M +  +R ++T   +I+         K    ++ ++    + PD+V    + +A 
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAY 348

Query: 429 RIGFDGTGALEMWKRI---GFLFKTVEINT 455
                   A+ M+ ++   GF    V ++T
Sbjct: 349 FKSGRMKAAVNMYHKLIERGFEPDVVALST 378



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           IEK+  N+     +I  LC+EG   E  R F ++    L P   +Y S I G  K G   
Sbjct: 398 IEKA--NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +A      M +  L      Y  LI       +  E       M   G SPD   ++LLI
Sbjct: 456 DAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLI 515

Query: 252 QEF 254
           + +
Sbjct: 516 RAY 518


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 36/305 (11%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++++   FD +K IE+   R N      ++  LC      +A R   +M    + P++ 
Sbjct: 305 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 364

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y++++  + K GK  EA     EM  M++ P   TY  LI     +   DE +    +M
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC  D ++YN LI  F  A  ++     ++ M  + +   + T   ++  +   G +
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           DK ++F+ ++         D      +++  N +   L D G+                 
Sbjct: 485 DKAQEFFSQM---------DFFGISPDIWTYNILLGGLCDNGE----------------- 518

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           L  A +        +  +M+  ++  ++ T   ++    K    +    L   L  + +K
Sbjct: 519 LEKALV--------IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK 570

Query: 416 PDIVT 420
           PDIVT
Sbjct: 571 PDIVT 575



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 25/284 (8%)

Query: 157  EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            EA+     M     +P L  Y  +++G  K G  + A   LN+M++  L P    Y+ +I
Sbjct: 818  EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 877

Query: 217  QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
                KYK  D+     K M+  G  P+ +TY+ LI      G           M+ ++++
Sbjct: 878  DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 937

Query: 277  LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-------- 328
                T  A++DA++  G L + EK Y           +++V++  +  I  Y        
Sbjct: 938  PDVFTFSALIDAFVKEGKLVEAEKLY-----------DEMVKRSIDPSIVTYSSLINGFC 986

Query: 329  MFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNV 383
            M  RLD+   + + + S+    ++V    L+   C       G++ V REM    +  N 
Sbjct: 987  MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME-VFREMSQRGLVGNT 1045

Query: 384  TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             T NI++    +  D    + +  E+ +  V P+I+T   L D 
Sbjct: 1046 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 1089



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 23/303 (7%)

Query: 140  FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            F    +I    +EG + EA + + EM   ++ PS+  Y+S+I+G+    + +EA      
Sbjct: 941  FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 1000

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            M   +  P   TY+ LI+ + KYK  +E     + M   G   + +TYN+LIQ    AG 
Sbjct: 1001 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 1060

Query: 260  LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
                +  +K M++  +     T   +LD     G L+K    ++ L  S+          
Sbjct: 1061 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME-------- 1112

Query: 320  LAEVYIKNYMFSRLD---------DLGDDLASRIGRTELVWCLRLLSHACLL-SHRGIDS 369
               +Y  N M   +          DL  +L+ +  + ++V    ++S  C   S    D+
Sbjct: 1113 -PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 1171

Query: 370  VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LY 425
            + +EM+      N    N ++ A L+  D +    L+ E+ +     D  TIG+    L+
Sbjct: 1172 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLH 1231

Query: 426  DAR 428
            D R
Sbjct: 1232 DGR 1234



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 2/194 (1%)

Query: 120  RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
            + +    +++K +E    R N      +I  LC  G   +A R   +M    + P +  +
Sbjct: 884  KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 943

Query: 178  NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            +++I  + K GK  EA    +EM + ++ P   TY  LI  +  +   DE     + M  
Sbjct: 944  SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 1003

Query: 238  DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              C PD +TYN LI+ F     ++     ++ M  + +   + T   ++      G  D 
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063

Query: 298  MEKFYKRLLNSRTP 311
             ++ +K +++   P
Sbjct: 1064 AQEIFKEMVSDGVP 1077



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/409 (19%), Positives = 148/409 (36%), Gaps = 41/409 (10%)

Query: 138  NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            N +    +I   C    +  A+    +M     +P++   +S+++GY    + +EA+  +
Sbjct: 729  NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 788

Query: 198  NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++M      P + T++ LI     +    E    +  M   GC PD +TY +++      
Sbjct: 789  DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 848

Query: 258  G-------LLKRME----------------------------GTYKSMLTKRMHLRSSTM 282
            G       LL +ME                              +K M TK +     T 
Sbjct: 849  GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 283  VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
             +++    N+G      +    ++  +          L + ++K       + L D++  
Sbjct: 909  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968

Query: 343  RIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTTANIILLAYLKMKDF 399
            R     +V    L++  C+  H  +D   +  E   S     +V T N ++  + K K  
Sbjct: 969  RSIDPSIVTYSSLINGFCM--HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 1026

Query: 400  KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
            +    +  E+  R +  + VT  IL        D   A E++K +        I T   +
Sbjct: 1027 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 1086

Query: 460  LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508
            L    K   L     V+  L+    E   +TY  +I+ + K  GK  DG
Sbjct: 1087 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA-GKVEDG 1134



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 55/120 (45%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G +++A   F +M+ F + P +  YN ++ G    G+  +AL+   +M++  +     
Sbjct: 480 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 539

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  +I+   K    +E       + L G  PD +TY  ++      GLL  +E  Y  M
Sbjct: 540 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 599



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 38/282 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C    + +AV    +M     KP +  YN+II    K  + N+A  F  E++   
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 323

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L+        + +    L  M     +P+ ITY+ L+  F   G +   +
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+  RM +    +                   Y  L+N        L  ++ E  
Sbjct: 384 ELFEEMV--RMSIDPDIVT------------------YSSLINGLC-----LHDRIDEA- 417

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
             N MF       D + S+    ++V    L++  C  + R  D   + REM    +  N
Sbjct: 418 --NQMF-------DLMVSKGCLADVVSYNTLINGFC-KAKRVEDGMKLFREMSQRGLVSN 467

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             T N ++  + +  D    +   S++    + PDI T  IL
Sbjct: 468 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 509



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 66/359 (18%), Positives = 144/359 (40%), Gaps = 13/359 (3%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R  K   R  ++    D++ ++ KSR    I +FN  +++  + +    +  +   ++ME
Sbjct: 158 RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFN--RLLSAIVKLKKYDVVISLGKKME 215

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY 225
              ++  L  +N +I+ +    + + AL  L +M ++   P   T   L+  + +  ++ 
Sbjct: 216 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 275

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D + +  KM+++ G  PD + YN +I        +      +K +  K +     T  A+
Sbjct: 276 DAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 334

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           ++   N        +    ++  +          L + ++KN       +L +++     
Sbjct: 335 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 394

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTTANIILLAYLKMKDFKHL 402
             ++V    L++  CL  H  ID   +    M S     +V + N ++  + K K  +  
Sbjct: 395 DPDIVTYSSLINGLCL--HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 452

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
             L  E+  R +  + VT   L        D   A E + ++ F   + +I T  ++L 
Sbjct: 453 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 511



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC+ G +E+A+  F++M+   +   +  Y ++I G  K GK  EA      +    
Sbjct: 509 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 568

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           L P   TY  ++       +  E++     MK +G
Sbjct: 569 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 38/307 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    II +LC+ G + EA +  + M  + + P   +Y ++I G+ K+G  + A    
Sbjct: 311 DEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLF 370

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+   + P   TY  +I    K     E       M + G  PD +TY  LI  +  A
Sbjct: 371 DEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKA 430

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +K     +  M+ K +     T  A+ D     G +D   +    +  SR  L+ +  
Sbjct: 431 GEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM--SRKGLQPN-- 486

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
                VY  N + + L  +G+     I +T                      ++ EM+ A
Sbjct: 487 -----VYTYNTIVNGLCKIGN-----IEQTV--------------------KLMEEMDLA 516

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
               +  T   ++ AY KM +      LL  +  + ++P +VT  +L +    GF  +G 
Sbjct: 517 GFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMN----GFCMSGM 572

Query: 438 LEMWKRI 444
           LE  +R+
Sbjct: 573 LEDGERL 579



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 120/301 (39%), Gaps = 29/301 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+ G M EA   F EM    L+P    Y ++I GY K G+  EA    N+M +  
Sbjct: 388 VIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG 447

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY  L     K    D  +  L  M   G  P+  TYN ++      G +++  
Sbjct: 448 LTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTV 507

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M     +  + T   ++DAY   G + K  +  + +LN R  L+  LV     V 
Sbjct: 508 KLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKR--LQPTLVT--FNVL 563

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLR------------LLSHACLLSH-RGIDSVV 371
           +  +  S + + G+ L        + W L             L+   C+ ++ R    + 
Sbjct: 564 MNGFCMSGMLEDGERL--------IEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIY 615

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           + M    V  +  T NI++  + K ++ K    L  E+    V+         YDA   G
Sbjct: 616 KAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM----VEKGYSVTAATYDALIRG 671

Query: 432 F 432
           F
Sbjct: 672 F 672



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     +I   C+ G M+EA     +M    L P++  Y ++  G  K G+ + A   L
Sbjct: 416 DEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELL 475

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    L P   TY+ ++    K    ++    ++ M L G  PD ITY  L+  +   
Sbjct: 476 HEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKM 535

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           G + +     + ML KR+     T   +++ +   GML+  E+  + +L
Sbjct: 536 GEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWML 584



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 63/133 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    I+  LC+ G +E+ V+  +EM+     P    Y +++  Y K+G+  +A   L
Sbjct: 486 NVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELL 545

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    L P   T++ L+  +    M ++ +  ++ M   G  P+  T+N L++++   
Sbjct: 546 RIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIK 605

Query: 258 GLLKRMEGTYKSM 270
             ++     YK+M
Sbjct: 606 NNMRATTEIYKAM 618



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 7/294 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   ++  LC+ G + EA     +M      P +  Y  ++ GY +IG+ ++ L  +
Sbjct: 241 NTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLV 300

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +E+K   L P    Y+ +I    K     E +  L+ M+  G  PD++ Y  +I  F   
Sbjct: 301 DELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKL 360

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLKEDL 316
           G +      +  M  K++     T  +++      G M++  E F + L+    P  E  
Sbjct: 361 GNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEP-DEVT 419

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVRE 373
              L + Y K         + + +  + G T  V     L+   L  +  ID    ++ E
Sbjct: 420 YTALIDGYCKAGEMKEAFSVHNQMVQK-GLTPNVVTYTALADG-LCKNGEIDVANELLHE 477

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           M    ++ NV T N I+    K+ + +    L+ E+      PD +T   L DA
Sbjct: 478 MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDA 531



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++   C +  M      ++ M    + P    YN +I G+ K     EA     E
Sbjct: 595 FNS--LMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKE 652

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           M E   S  + TYD LI+ + K K + E     + M+  G   +   Y++ +
Sbjct: 653 MVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFV 704


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 135/313 (43%), Gaps = 9/313 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS       D+ + +E+  +  + F    II  LC +G ++ A+  F+EME   +K S+ 
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++ G  K GK+N+  L L +M    + P   T++ L+  + K     E +   K M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ ITYN L+  +     L         M+  +      T  +++  Y     +
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 384

Query: 296 DKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           D   K ++ +  S+  L  + V    L + + ++      ++L  ++ S     +++   
Sbjct: 385 DDGMKVFRNI--SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 354 RLLSHACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
            LL   C      + ++ +  +++ +K+   +     I+    K    +    L   LP 
Sbjct: 443 ILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501

Query: 412 RHVKPDIVTIGIL 424
           + VKP+++T  ++
Sbjct: 502 KGVKPNVMTYTVM 514



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 9/291 (3%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG + EAV     M     +P +  YNSI++G  + G  + AL  L +M+E N+     T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I +  +    D      K M+  G     +TYN L++    AG         K M+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           ++ +     T   +LD ++  G L +  + YK ++             L + Y      S
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANI 388
             +++ D +       ++V    L+   C++    +D    V R +    +  N  T +I
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR--VDDGMKVFRNISKRGLVANAVTYSI 408

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           ++  + +    K    L  E+ +  V PD++T GIL D    G    G LE
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD----GLCDNGKLE 455



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F++++   +   + +Y +II G  K GK  +A      +    + P 
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I    K     E ++ L+ M+ DG +P+  TYN LI+     G L       +
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            M +      +S++  ++D  ++ G LDK
Sbjct: 568 EMKSCGFSADASSIKMVIDMLLS-GELDK 595



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 113/323 (34%), Gaps = 79/323 (24%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           RF    +R++Q   V D  K +E + I  N +    +I   C       A     ++   
Sbjct: 93  RFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKL 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    +N++I G    GK +EA++ ++ M E                          
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE-------------------------- 186

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                    +GC PD +TYN ++     +G         + M  + +     T   I+D+
Sbjct: 187 ---------NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 289 YMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
               G +D     +K +    + S       LVR L                      + 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC---------------------KA 276

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           G+    W     +   LL        +++M S ++  NV T N++L  ++K    +    
Sbjct: 277 GK----W-----NDGALL--------LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           L  E+ TR + P+I+T   L D 
Sbjct: 320 LYKEMITRGISPNIITYNTLMDG 342



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  +++++++KS+++        II  +C+ G +E+A   F  +    +KP++  Y 
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
            +I G  K G  +EA + L +M+E   +P   TY+ LI+A+
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 5/190 (2%)

Query: 124 QVFDMWKNIEKSR-----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +V D WK  E+        NEF    +I   C+ G ++ A++ ++ M    ++P++ +Y+
Sbjct: 328 RVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYS 387

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G +  GK  EA L   EM     +P   TY  +IQ Y K           + M   
Sbjct: 388 AMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGA 447

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC P+ ++Y++LI      G LK     +K ML +     +    +++      GM+D  
Sbjct: 448 GCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGG 507

Query: 299 EKFYKRLLNS 308
            + +  +L S
Sbjct: 508 LRLFYDMLAS 517



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S +I     +W+ +  S  R N      +IG L   G M EA   F+EM      P++ 
Sbjct: 360 KSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNII 419

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y SII GY KIG  + AL    EM      P + +Y  LI          +  M  K M
Sbjct: 420 TYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHM 479

Query: 236 KLDGCSPDHITYNLLIQEFACAGLL 260
              GC+PD I Y  +I+    +G++
Sbjct: 480 LDRGCAPDTIAYTSMIKGLCVSGMV 504



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            ++  L   G +++A +  +EME   L  +  +Y+++I G+ K G+ + AL     M   
Sbjct: 318 AVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVAS 377

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P    Y  +I     +    E ++  + M    C+P+ ITY  +IQ +   G   R 
Sbjct: 378 PVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRA 437

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              ++ M+       + +   +++   N G L      +K +L+
Sbjct: 438 LSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLD 481



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/167 (16%), Positives = 71/167 (42%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  +   G ++ A + F  M+     P+   YN ++HG    G+   A+  +  M+ 
Sbjct: 247 NPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMER 306

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             + P   TY  ++    +     +     + M+ +G + +   Y+ +I  F  +G +  
Sbjct: 307 EGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDC 366

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
               +++M+   +        A++    NFG + + E  ++ +++S+
Sbjct: 367 ALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSK 413



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LF 196
           N  +   +I  LC  G +++A+  ++ M      P    Y S+I G    G  +  L LF
Sbjct: 452 NAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLF 511

Query: 197 LNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            + +   +  P   +Y    DGL+ A    +  D ++  L      GC PD +T N+ ++
Sbjct: 512 YDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLD----QGCDPDTVTCNIFLR 567

Query: 253 EFACAGLLKR--MEGTYKSMLTKRMHLRSSTMVAILDA 288
           EF       R  +EG    +  +R ++ +  ++ ++ A
Sbjct: 568 EFGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLA 605


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 138/321 (42%), Gaps = 60/321 (18%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN----------- 204
           E+A   F+ M    LKPS+++Y +++  Y + G  ++A+  ++EMK ++           
Sbjct: 144 EQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSI 203

Query: 205 -------------------------LSPQSDTYDGLIQAYGKYKMYDEID-MCLKMMKLD 238
                                    ++  + TY+ +I  +GK KM+++++ + L+M++ D
Sbjct: 204 LIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESD 263

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            C PD IT+N  I+ +  +  +++ME  YK      +     T  +++ +Y   GM DKM
Sbjct: 264 SCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKM 323

Query: 299 --------EKFYKRLLNSRTPLKEDLVR----KLAEVYIKNYMFSRLDDLGDDLASRIGR 346
                   ++F+   + +   + +   R    +  E Y KN  F  +             
Sbjct: 324 KSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKP----------- 372

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
             + +C  + ++        +DS++R++E++ V  +    N ++  Y +  + + +  L 
Sbjct: 373 NSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELF 432

Query: 407 SELPTRHVKPDIVTIGILYDA 427
            E+      PD +T   +  A
Sbjct: 433 LEMKENKCVPDGITFATMIRA 453



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 99/236 (41%), Gaps = 18/236 (7%)

Query: 75  QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE- 133
           + + +L+  + +  SCP  ++  +             F++    S QI ++   +K  + 
Sbjct: 250 EQMESLLLEMIESDSCPPDLITFN------------TFIRAYGNSEQIEKMEKWYKEFQL 297

Query: 134 ---KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
              +  I  +NS  +I    + G+ ++       ME     P++   N+II  + + G  
Sbjct: 298 MGIEPDIWTYNS--MISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNI 355

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            E   +   MK   + P S TY  L+ AYGK    +++D  L+ ++     PD   +N L
Sbjct: 356 EEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCL 415

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           I  +  AG +++M   +  M   +      T   ++ A    GM +  ++   +L+
Sbjct: 416 INVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRALKAQGMTEDAQRLENKLI 471



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 189/458 (41%), Gaps = 58/458 (12%)

Query: 36  FAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQIL 95
           F+ +   K IS   +SS P   + S+ H+  L  +    Q+ +AL +   K +S   +IL
Sbjct: 16  FSTSFTSKVISMASVSSTPY--FISSSHSRSLKRT--STQSSDALQRDPKKGLS---RIL 68

Query: 96  QHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM 155
           + D         A I+ ++  + S++       + N+    + E   + I     +E L 
Sbjct: 69  RRD---------AAIKAIERKANSKK-------YNNLWPKAVLEALDEAI-----QENLW 107

Query: 156 EEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           E A++ F  + +    +P  + Y  ++    K  +  +A L    M    L P  D Y  
Sbjct: 108 ETALKIFGLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTA 167

Query: 215 LIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SM 270
           L+ AYG+   ++  I    +M  +  C PD  TY++LI    C   L+R +   K    M
Sbjct: 168 LVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILID---CCTRLRRFDLLKKILADM 224

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNY 328
               +   + T   I++ +    M ++ME     ++ S +    DL+        Y  + 
Sbjct: 225 SCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDS-CPPDLITFNTFIRAYGNSE 283

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLL--SHACLLSHRGIDSVVREMESAKVRWNVTTA 386
              +++    +    +G    +W    +  S+     +  + SV+  ME       + T 
Sbjct: 284 QIEKMEKWYKEF-QLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTM 342

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF 446
           N I+ ++ +  + + +      +  + +KP+ VT   L +A    +  +G LE   ++  
Sbjct: 343 NTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNA----YGKSGDLE---KVDS 395

Query: 447 LFKTVEINTD-----PL---VLAVYGKGHFLRYCEEVY 476
           + + +E N+D     PL   ++ VYG+   +R   E++
Sbjct: 396 ILRQIE-NSDVVPDTPLFNCLINVYGQAGNVRKMGELF 432


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 56/413 (13%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
             +EF    +I     EG+++EA +   E++    KP   +YNS++  + K G + EAL 
Sbjct: 284 EFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALS 343

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EM++ N  P S TY+ L   Y +    DE    +  M   G  P+ ITY  +I  + 
Sbjct: 344 ILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYG 403

Query: 256 CAG-------LLKRMEG--------TYKS---MLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            AG       L  +M+         TY S   ML K+   R+  ++ +L      G    
Sbjct: 404 KAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKS--RTEDVIKVLCEMKLNGCAPN 461

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR----------- 346
              +   L       K + V K+    +KN  F    D  + L S   R           
Sbjct: 462 RATWNTMLAVCSEEGKHNYVNKVLR-EMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMY 520

Query: 347 --------TELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYL 394
                   T  V     L +A  L+HRG     +SV+++M++   + N T+ +++L  Y 
Sbjct: 521 GEMVKSGFTPCVTTYNALLNA--LAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYS 578

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL----YDARRI-GFDGTGALEMWKRIGFLFK 449
           K  + + +  +  E+    V P  + +  L    +  R + G +   A +  ++ G+   
Sbjct: 579 KAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGME--RAFDQLQKYGYKPD 636

Query: 450 TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
            V IN+   +L+++ +        E+   +     +   +TY  L+DL ++ +
Sbjct: 637 LVVINS---MLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVRED 686



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++R L   S+     ++FD+   +EK  ++      I+      G  + A+  F +MEG 
Sbjct: 187 MVRILGRESQHSIASKLFDLIP-VEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGI 245

Query: 169 ALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            L P+L  YN ++  Y K+G+ +   L  L+EM+   L     T   +I A G+  M DE
Sbjct: 246 GLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDE 305

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  +KL+G  P  + YN ++Q F  AG+        K M        S T   +  
Sbjct: 306 ARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAA 365

Query: 288 AYMNFGMLDK 297
            Y+  G LD+
Sbjct: 366 TYVRAGFLDE 375



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 125/320 (39%), Gaps = 38/320 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++ ML ++   E+ ++   EM+     P+   +N+++   S+ GK N     L
Sbjct: 426 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 485

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            EMK     P  DT++ LI +Y +     D   M  +M+K  G +P   TYN L+   A 
Sbjct: 486 REMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVK-SGFTPCVTTYNALLNALAH 544

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G  K  E   + M TK      ++   +L  Y   G +  +EK  K + + +      L
Sbjct: 545 RGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWIL 604

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS------------------H 358
           +R L     K      ++   D L     + +LV    +LS                  H
Sbjct: 605 LRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIH 664

Query: 359 ACLLSHRG------IDSVVREMESAKVRW------------NVTTANIILLAYLKMKDFK 400
            C L          +D  VRE E  K               +V + N ++  + +    +
Sbjct: 665 ECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQ 724

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               +LSE+ T+ ++P IVT
Sbjct: 725 EAIRVLSEMTTKGIQPTIVT 744



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           +D  W     LK    S   P V              +N+  +I   C +GLM+EA+R  
Sbjct: 685 EDECWKAEEVLKGIQNSVPEPDVV------------SYNT--VIKGFCRKGLMQEAIRVL 730

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            EM    ++P++  YN+ + GY+ +  F+EA   +  M E N  P   TY  L+  Y K 
Sbjct: 731 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKA 790

Query: 223 KMYDE-IDMCLKMMKLD 238
             ++E +D   K+ ++D
Sbjct: 791 GKHEEAMDFVTKIKEID 807



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EE ++  Q       +P +  YN++I G+ + G   EA+  L+EM    + P   TY+  
Sbjct: 692 EEVLKGIQNS---VPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTF 748

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +  Y   +++DE +  ++ M    C P  +TY +L+  +  AG
Sbjct: 749 LSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAG 791



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           RAF +++ +  KP L + NS++  +S+   F++A   L+ + E  L P   TY+ L+  Y
Sbjct: 623 RAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLY 682

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            +     + +  LK ++     PD ++YN +I+ F   GL++        M TK +    
Sbjct: 683 VREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTI 742

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            T    L  Y    + D+  +  + ++       E   + L + Y K
Sbjct: 743 VTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCK 789


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 7/324 (2%)

Query: 105 HFWAVIR-FLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           HF  +I  ++K+         ++D M KN  +  +  FN+  +I  LC++GLM  AV   
Sbjct: 346 HFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNT--LIHGLCKKGLMGSAVDMV 403

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +M      P+L  Y +++ G+ K  +  EA   LNEM           Y+ L++A  K 
Sbjct: 404 NDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN 463

Query: 223 -KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            K+   +DM L  M   GC PD  T+N LI         +     Y+ ML   +   + T
Sbjct: 464 GKVPKALDM-LGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVT 522

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++ A++  G + +  K    +L    PL E     L + + K     +   L D++ 
Sbjct: 523 YNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMV 582

Query: 342 SRIGRTELVWCLRLLSHACLLSHR-GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
            +      + C  L++  C +        ++R+M    +  +V T N ++    KM + +
Sbjct: 583 RKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIR 642

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
               L ++L    ++PD +T   L
Sbjct: 643 EAFNLFNKLQAEGIQPDAITYNTL 666



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 10/284 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC    ++ A    ++M      P+  +Y ++IH  SK  + NEAL  L EM  M 
Sbjct: 214 VMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMG 273

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P  DT++ +I    +     E    +  M   G +P+ ITY +L+      G +   +
Sbjct: 274 CLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQ 333

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF-YKRLLNSRTPLKEDLVRKLAEV 323
                +L K           +++ Y+  G LD+   F Y +++ +           L   
Sbjct: 334 ----VLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHG 389

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC---LLSHRGIDSVVREMESAKVR 380
             K  +     D+ +D+++      L+    LL   C    L   G   V+ EM +    
Sbjct: 390 LCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGY--VLNEMSAKGFE 447

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            N+   N++L A  K         +L E+  +  KPDI T   L
Sbjct: 448 LNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTL 491



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           FL+  +    +  V DM        ++E     +I   C+ G  E+A+  F EM    L 
Sbjct: 530 FLRGGAIQEALKLVNDML--FRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLV 587

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS    N +I+G  ++GK   AL  L +M    L+P   TY+ LI    K     E    
Sbjct: 588 PSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNL 647

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLL 260
              ++ +G  PD ITYN LI     AG+ 
Sbjct: 648 FNKLQAEGIQPDAITYNTLICWHCRAGMF 676


>gi|15222950|ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13800
 gi|8778410|gb|AAF79418.1|AC068197_28 F16A14.3 [Arabidopsis thaliana]
 gi|332190949|gb|AEE29070.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 883

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 19/312 (6%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + +D++K   ++ I  +          L + G +EEA+  F+EM G  + P +  Y ++I
Sbjct: 379 EAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLI 438

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            G    GK ++A   + EM     +P    Y+ L        +  E    LKMM+  G  
Sbjct: 439 GGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVK 498

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P ++T+N++I+    AG L + E  Y+S+     H       +++  +   G LD     
Sbjct: 499 PTYVTHNMVIEGLIDAGELDKAEAFYESL----EHKSRENDASMVKGFCAAGCLDHA--- 551

Query: 302 YKRLLNSRTPLKEDLVRKL-----AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           ++R +    PL + +   L     AE   K+Y+ S+  DL D +       E     +L+
Sbjct: 552 FERFIRLEFPLPKSVYFTLFTSLCAE---KDYI-SKAQDLLDRMWKLGVEPEKSMYGKLI 607

Query: 357 SHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
              C +++ R        + + K+  ++ T  I++  Y ++ + K    L  ++  R VK
Sbjct: 608 GAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVK 667

Query: 416 PDIVTIGILYDA 427
           PD+VT  +L ++
Sbjct: 668 PDVVTYSVLLNS 679



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 51/123 (41%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           +EM+ F +KP +  Y  +I    KIG   EA    ++M E  + P +  Y  LI    K 
Sbjct: 750 REMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKM 809

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               E  M    M   G  PD + Y  LI      G + +     K ML K +    +++
Sbjct: 810 GYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASL 869

Query: 283 VAI 285
            A+
Sbjct: 870 SAV 872



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 116/286 (40%), Gaps = 24/286 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           + G L   GL +EA    + ME   +KP+   +N +I G    G+ ++A  F   ++  +
Sbjct: 472 LAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKS 531

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               +    G   A      ++      + ++L+   P  + + L     A    + + +
Sbjct: 532 RENDASMVKGFCAAGCLDHAFE------RFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQ 585

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M    +    S    ++ A+     + K  +F++ L+  +      +V  L    
Sbjct: 586 DLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKK------IVPDLFTYT 639

Query: 325 IKNYMFSRLDD------LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           I    + RL++      L +D+  R  + ++V      +++ LL+      + REME+  
Sbjct: 640 IMINTYCRLNEPKQAYALFEDMKRRDVKPDVV------TYSVLLNSDPELDMKREMEAFD 693

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V  +V    I++  Y  + D K +  L  ++  R + PD+VT  +L
Sbjct: 694 VIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVL 739



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+IG  C    + +A   F+ +    + P L  Y  +I+ Y ++ +  +A     +MK  
Sbjct: 605 KLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRR 664

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           ++ P   TY  L+ +        E+DM  +M   D   PD + Y ++I  +     LK++
Sbjct: 665 DVKPDVVTYSVLLNS------DPELDMKREMEAFD-VIPDVVYYTIMINRYCHLNDLKKV 717

Query: 264 EGTYKSM 270
              +K M
Sbjct: 718 YALFKDM 724


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 133/383 (34%), Gaps = 76/383 (19%)

Query: 127 DMWKNIEKSRINE------FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           +M K + K+ + E      +    II      G   EA++ F  M+ + LKP+L  YN++
Sbjct: 94  EMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAV 153

Query: 181 IHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           I    K G +F   L   +EM    + P   T++ L+    K  +++        M   G
Sbjct: 154 IDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRG 213

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
              D  TYN L+      G L         M  K +     T   ++D Y   G LD   
Sbjct: 214 IDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDAR 273

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
             +  +      L       L  +Y K                 +GR E           
Sbjct: 274 NLFNEMKFLGISLDRVSYNTLLSIYAK-----------------LGRFE----------- 305

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                  +D V REME++ +R +V T N +L  Y K   +  +R +  E+  RHV P+++
Sbjct: 306 -----EAMD-VCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLL 359

Query: 420 TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           T   L D                                   VY KG   R   +V+   
Sbjct: 360 TYSTLID-----------------------------------VYSKGGLYREAMDVFREF 384

Query: 480 EPYSREKKRWTYQNLIDLVIKHN 502
           +    +     Y  LID + K+ 
Sbjct: 385 KKAGLKADVVLYSALIDALCKNG 407



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 173/414 (41%), Gaps = 39/414 (9%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRA 161
           D +  ++R L N    ++    F+     E+ + NE    +  +I  L   G +E A   
Sbjct: 41  DDYVFLLRELGNRGDCKKAICCFEFAVKRERKK-NEQGKLASAMISTLGRLGKVEMAKTV 99

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F+         ++  +++II  Y + G  NEA+     MK+  L P   TY+ +I A GK
Sbjct: 100 FKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGK 159

Query: 222 YKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
             + +  +      M  +G  PD IT+N L+   +  GL +        M+ + +     
Sbjct: 160 GGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIF 219

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYM-FSRLDDLGD 338
           T   +LDA    G LD   +     + S  P K  L   +     I  Y    RLDD   
Sbjct: 220 TYNTLLDAVCKGGQLDMAFE-----IMSEMPAKNILPNVVTYSTMIDGYAKAGRLDD-AR 273

Query: 339 DLASRIGRTELVWCLRLLSHACLLS--------HRGIDSVVREMESAKVRWNVTTANIIL 390
           +L + +    L   L  +S+  LLS           +D V REME++ +R +V T N +L
Sbjct: 274 NLFNEM--KFLGISLDRVSYNTLLSIYAKLGRFEEAMD-VCREMENSGIRKDVVTYNALL 330

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
             Y K   +  +R +  E+  RHV P+++T   L D    G     A+++++     FK 
Sbjct: 331 GGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFRE----FKK 386

Query: 451 VEINTD-----PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR---WTYQNLID 496
             +  D      L+ A+   G      E   S L+  ++E  R    TY ++ID
Sbjct: 387 AGLKADVVLYSALIDALCKNG----LVESAVSLLDEMTKEGIRPNVVTYNSIID 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 123/316 (38%), Gaps = 26/316 (8%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA+   +EME   ++  +  YN+++ GY K  K++       EMK  ++SP   TY
Sbjct: 302 GRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTY 361

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  Y K  +Y E     +  K  G   D + Y+ LI      GL++        M  
Sbjct: 362 STLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 421

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  +I+DA   FG     E        +     + L     E   K+ +  R
Sbjct: 422 EGIRPNVVTYNSIIDA---FGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADR 478

Query: 333 LDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
            D+      G   A + G+ +      ++   C+L       V  +M   +++ NV T +
Sbjct: 479 EDNRIIKIFGQLAAEKAGQAKNSGGQEMM---CIL------GVFHKMHELEIKPNVVTFS 529

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
            IL A  +   F+   +LL EL     +   V  G+L   R           +W++   L
Sbjct: 530 AILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRE---------NVWEQAQSL 580

Query: 448 FKTVEINTDPLVLAVY 463
           F  V++       A Y
Sbjct: 581 FDEVKLMDSSTASAFY 596



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 10/285 (3%)

Query: 114 KNSSRSRQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ-EMEGFAL 170
           K     +++ ++FD M +N ++  RI  FNS   +  +C +G + EA R+   EM    +
Sbjct: 159 KGGVEFKRVLEIFDEMLRNGMQPDRIT-FNS---LLAVCSKGGLWEAARSLSCEMVNRGI 214

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
              +  YN+++    K G+ + A   ++EM   N+ P   TY  +I  Y K    D+   
Sbjct: 215 DQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARN 274

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
               MK  G S D ++YN L+  +A  G  +      + M    +     T  A+L  Y 
Sbjct: 275 LFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYG 334

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                D + K ++ +              L +VY K  ++    D+  +      + ++V
Sbjct: 335 KQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVV 394

Query: 351 WCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
               L+   C   L    + S++ EM    +R NV T N I+ A+
Sbjct: 395 LYSALIDALCKNGLVESAV-SLLDEMTKEGIRPNVVTYNSIIDAF 438


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 157/378 (41%), Gaps = 32/378 (8%)

Query: 67  LVESYHEHQ--ALNALIQRL--NKKVSCPLQILQ---HDGDWTKDHFWAVIRFLKNSSRS 119
           +VE  H+     LNAL+  L  N KVS  + ++      G    +  +  +  LK   +S
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV--LKVMCKS 225

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
            Q     ++ + +E+ +I  +      II  LC++G ++ A   F EME    K  + IY
Sbjct: 226 GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIY 285

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++I G+   G++++    L +M +  ++P    +  LI  + K     E +   K M  
Sbjct: 286 TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G SPD +TY  LI  F     L +       M++K       T   +++ Y    ++D 
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD 405

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG---------DDLASRIGRTE 348
             + ++++          L   +A+    N +     +LG          ++ SR  R +
Sbjct: 406 GLELFRKM---------SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456

Query: 349 LVWCLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           +V    LL   C      + ++ +  ++E +K+  ++   NII+              L 
Sbjct: 457 IVSYKILLDGLCDNGEPEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515

Query: 407 SELPTRHVKPDIVTIGIL 424
             LP + VKPD+ T  I+
Sbjct: 516 CSLPLKGVKPDVKTYNIM 533



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 38/337 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG + EA+     M     KP+L   N++++G    GK ++A+L ++ M E  
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 205 LSPQSDTYDGLIQAYGKY-----------KMYDE------------ID-MC--------- 231
             P   TY  +++   K            KM +             ID +C         
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267

Query: 232 --LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M++ G   D I Y  LI+ F  AG         + M+ +++        A++D +
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
           +  G L + E+ +K ++             L + + K     + + + D + S+     +
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 350 VWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                L++  C   L   G++ + R+M    V  +  T N ++  + ++   +  + L  
Sbjct: 388 RTFNILINGYCKANLIDDGLE-LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           E+ +R V+PDIV+  IL D      +   ALE++++I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  E+A+  F+++E   ++  + IYN IIHG     K ++A      +    + P 
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY+ +I    K     E D+  + M+ DG SP+  TYN+LI+
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR 570



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 59/319 (18%), Positives = 117/319 (36%), Gaps = 36/319 (11%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     +R++Q   V D+ K +E   I  N +    +I   C    +  A  A  ++   
Sbjct: 77  RLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL 136

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    ++++I+G    G+ +EAL  ++ M EM   P   T + L+          + 
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   G  P+ +TY  +++    +G         + M  +++ L +     I+D 
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G LD     +  +       K D++  +    I+ + ++   D G  L        
Sbjct: 257 LCKDGSLDNAFNLFNEM--EIKGFKADII--IYTTLIRGFCYAGRWDDGAKL-------- 304

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                                 +R+M   K+  +V   + ++  ++K    +    L  E
Sbjct: 305 ----------------------LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 409 LPTRHVKPDIVTIGILYDA 427
           +  R + PD VT   L D 
Sbjct: 343 MIQRGISPDTVTYTSLIDG 361



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 106/280 (37%), Gaps = 18/280 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE G +E A   FQEM    ++P +  Y  ++ G    G+  +AL    ++++  
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +      Y+ +I         D+       + L G  PD  TYN++I      G L   +
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M          T   ++ A++  G   K  K  + +      +    +R      
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR------ 601

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL-RLLSHACLLSHRGI---DSVVREMESAKVR 380
              +  S L  +      + G    V+    LL   CL  +  +    ++ + M++   +
Sbjct: 602 ---FALSTLARM-----LKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYK 653

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            NV T N ++   L       +  +L ++  R  +P+ VT
Sbjct: 654 PNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVT 693


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+ G  +EA + F+EM+   + PS+  YNS+IHG+   GK+ E+   L+EM +  
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG 280

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   T++ LI    K     E    L +M   G  PD +TYN LI+ F   G L    
Sbjct: 281 LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAR 340

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             + SM +K       +   +++ Y     +++  K Y  +L
Sbjct: 341 ELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 1/283 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG + EA +    M    + P L  YNS+I G+  +G  N A      M    
Sbjct: 291 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 350

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ LI  Y K    +E       M L G  P+ ITY+ L++    AG +   +
Sbjct: 351 CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAK 410

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M    +   S T    LD       L +  K +  L +S   L+ + +  L +  
Sbjct: 411 KLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGL 470

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV-VREMESAKVRWNV 383
            K        +L + L++      +V    ++   C        +V +++ME+     ++
Sbjct: 471 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 530

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            T N ++  + +    + +  LL  +  + V PD +T  I+ D
Sbjct: 531 ITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM---- 200
           +I  LC E  + EA R F  M+     P +  Y ++I G    G  N AL    EM    
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDI 204

Query: 201 --KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
              E+N  P   TY+ ++    K    DE     + MK  G  P  I+YN LI  F CAG
Sbjct: 205 SRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAG 264

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +  +     ML + +     T   ++D     G + + +K    ++ S
Sbjct: 265 KWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES 314



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   + EA++ F E++    K  +E  N +I G  K GK   A     ++      P 
Sbjct: 435 LCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPN 494

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I  + +    D+ ++ ++ M+ +GC+PD ITYN L++ F  +  L+ +     
Sbjct: 495 VVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLH 554

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKL 320
            M  K +   + T   ++D      ML K EK+ + L L  R P+++ + + L
Sbjct: 555 RMAQKDVSPDAITCSIVVD------MLSKDEKYQECLHLLPRFPIQKGVDKHL 601



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 59/111 (53%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           N   +I  LC+ G +E A   F+++     +P++  Y  +IHG+ + G+ ++A + + +M
Sbjct: 462 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 521

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +    +P   TY+ L++ + +    +E+   L  M     SPD IT ++++
Sbjct: 522 EANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVV 572



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/404 (16%), Positives = 169/404 (41%), Gaps = 52/404 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK-----IIGMLCEEGLMEEAVRAFQEME 166
            L   ++ +   QVF ++  +   R++  +S +     ++  LC    + E   AF  + 
Sbjct: 75  LLSGLAKIKHYSQVFSLYNQM---RLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGIL 131

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG------ 220
                P++  YN++I G     + +EA      M+++  +P   TY  LI+         
Sbjct: 132 RRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNIN 191

Query: 221 -KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
              K++ E+   +   +++ C P+ ITYN+++      G     +  ++ M T+ M    
Sbjct: 192 IALKLHQEMLNDISRYEIN-CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSI 250

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            +  +++  +   G  ++ ++    +L+    L+ D+V            F+ L D    
Sbjct: 251 ISYNSLIHGFCCAGKWEESKRLLDEMLDQG--LQPDMVT-----------FNVLID---- 293

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
             +     +++   +LL         G+      M  + +  ++ T N ++  +  + D 
Sbjct: 294 --TLCKEGKVIEAKKLL---------GV------MIESGIVPDLVTYNSLIEGFCMVGDL 336

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT-DPL 458
              R L   +P++  +PD+++  +L +          A++++  +  + K   + T D L
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396

Query: 459 VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +  ++  G  +   ++++S ++ +   +  +TY   +D + K++
Sbjct: 397 LKGIFLAGK-VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKND 439


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 21/311 (6%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           +W    +  ++      +I  LC+ G + EA+   + +    LK  +  Y +++ G+ ++
Sbjct: 242 LWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRV 301

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHIT 246
            +F++ +  +NEM E+   P      GL+    K    D   D+ +K+ +  G  P+   
Sbjct: 302 QQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRF-GFLPNLFV 360

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN LI        L + E  YK+M +  + L   T   ++D++   GMLD  E ++ R++
Sbjct: 361 YNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMI 420

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV---------WCLRLLS 357
                  ED +R+   +Y  N + +     GD  A+    T+++             L+S
Sbjct: 421 -------EDGIRE--TIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLIS 471

Query: 358 HACL-LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
             C  L       + REM   ++  +V T   ++       +      L  E+  R +KP
Sbjct: 472 GYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKP 531

Query: 417 DIVTIGILYDA 427
             VT  ++ + 
Sbjct: 532 TEVTYNVMIEG 542



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++NE     ++   C +G + EA+ A  EM    +   L  +  +I G  K         
Sbjct: 600 KLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFG 659

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L +M +  L P S  Y  +I AY K   + +   CL +M  + C P+ +TY   +    
Sbjct: 660 LLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLC 719

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             G + R    ++ MLT  +   S T    LD+    G + +    +  +L
Sbjct: 720 KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML 770



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 123/312 (39%), Gaps = 21/312 (6%)

Query: 128 MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           ++KN+    +  N+     +I   C+ G+++ A   F  M    ++ ++  YNS+I+G+ 
Sbjct: 380 LYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHC 439

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLD 238
           K G  + A     +M    L P + T+  LI  Y K       +K+Y E       M   
Sbjct: 440 KFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYRE-------MNEK 492

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             +P   T+  LI        +      +  M+ +++     T   +++ Y     +DK 
Sbjct: 493 EIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKA 552

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLS 357
            +  + +L++         R L          S   D  DDL  + +   E+  C   L 
Sbjct: 553 FELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEM--CYSALL 610

Query: 358 HACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           H      R  +  S   EM    +  ++    +++   +K +D K L  LL ++  + ++
Sbjct: 611 HGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLR 670

Query: 416 PDIVTIGILYDA 427
           PD V    + DA
Sbjct: 671 PDSVIYTSMIDA 682



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L +EG M+EA     EM    L  +   YN +I G+ K+G+  EA   L+EM E  + P 
Sbjct: 753 LTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPD 811

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I  + +             M   G  PD + +NLLI      G L +      
Sbjct: 812 CITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRN 871

Query: 269 SMLTKRMHLR 278
            ML++ +  R
Sbjct: 872 DMLSRGLKPR 881


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC+EG ++ A     EM    L+P++  YNSI++G  K G   EA+  + E +   
Sbjct: 905  LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 964

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            L+  + TY  L+ AY K    D+    LK M   G  P  +T+N+L+  F   G+L+  E
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 ML K +   ++T  +++  Y     L      YK +
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)

Query: 128  MWKNIE-----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +WK IE       + N +    IIG+LC    + EA  AF EM    + P   +Y ++I 
Sbjct: 743  VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 802

Query: 183  GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            G+ K G    A  F  EM   +++P   TY  +I  + +     E       M   G  P
Sbjct: 803  GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 862

Query: 243  DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            D +T+  LI  +  AG +K     +  M+         T   ++D     G LD      
Sbjct: 863  DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS----- 917

Query: 303  KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                        +L+ ++ ++ ++  +F+  + + + L       E V            
Sbjct: 918  ----------ANELLHEMWKIGLQPNIFT-YNSIVNGLCKSGNIEEAV------------ 954

Query: 363  SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                   +V E E+A +  +  T   ++ AY K  +    + +L E+  + ++P IVT  
Sbjct: 955  ------KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 1008

Query: 423  ILYDARRIGFDGTGALE 439
            +L +    GF   G LE
Sbjct: 1009 VLMN----GFCLHGMLE 1021



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 127  DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
            +MWK   +  I  +NS  I+  LC+ G +EEAV+   E E   L      Y +++  Y K
Sbjct: 924  EMWKIGLQPNIFTYNS--IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981

Query: 187  IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             G+ ++A   L EM    L P   T++ L+  +  + M ++ +  L  M   G +P+  T
Sbjct: 982  SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1041

Query: 247  YNLLIQEFACAGLLKRMEGTYKSMLTK 273
            +N L++++     LK     YK M ++
Sbjct: 1042 FNSLVKQYCIRNNLKAATAIYKDMCSR 1068



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 1/289 (0%)

Query: 144  KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            ++I   C+ G M++A R    M      P++  Y ++I G  K G  + A   L+EM ++
Sbjct: 869  ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 928

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             L P   TY+ ++    K    +E    +   +  G + D +TY  L+  +  +G + + 
Sbjct: 929  GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 988

Query: 264  EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
            +   K ML K +     T   +++ +   GML+  EK    +L             L + 
Sbjct: 989  QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 1048

Query: 324  YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
            Y           +  D+ SR +G     +   +  H    + +    + +EM+      +
Sbjct: 1049 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 1108

Query: 383  VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            V+T ++++  +LK K F   R +  ++    +  D        D +  G
Sbjct: 1109 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 1157



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 34/273 (12%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            II   C+ G M EA + F EM    L+P    +  +I+GY K G   +A    N M +  
Sbjct: 835  IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 894

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             SP   TY  LI    K    D  +  L  M   G  P+  TYN ++     +G ++   
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                      ++  + T   ++DAY   G +DK ++  K +L     L+  +V     V 
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG--LQPTIVT--FNVL 1010

Query: 325  IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            +  +    + + G+ L        L W L           +GI              N T
Sbjct: 1011 MNGFCLHGMLEDGEKL--------LNWML----------AKGIAP------------NAT 1040

Query: 385  TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            T N ++  Y    + K    +  ++ +R V PD
Sbjct: 1041 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 1073



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 124/313 (39%), Gaps = 31/313 (9%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGL 215
           A+  F+E     +  ++  YN +IH   ++G+  EA  LL L E+K    +P   +Y  +
Sbjct: 673 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK--GYTPDVISYSTV 730

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  Y ++   D++   +++MK  G  P+   Y  +I        L   E  +  M+ + +
Sbjct: 731 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 790

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNYMFSRL 333
              +     ++D +   G +    KF+   ++SR  TP          +V     + S  
Sbjct: 791 LPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITP----------DVLTYTAIISGF 839

Query: 334 DDLGD---------DLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
             +GD         ++  +    + V    L++  C   H +    V   M  A    NV
Sbjct: 840 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 899

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T   ++    K  D      LL E+    ++P+I T    Y++   G   +G +E   +
Sbjct: 900 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT----YNSIVNGLCKSGNIEEAVK 955

Query: 444 IGFLFKTVEINTD 456
           +   F+   +N D
Sbjct: 956 LVGEFEAAGLNAD 968



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 140  FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            FNS  ++   C    ++ A   +++M    + P  + Y +++ G+ K     EA     E
Sbjct: 1042 FNS--LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 1099

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            MK    S    TY  LI+ + K K + E       M+ +G + D   ++  
Sbjct: 1100 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 1150



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            C+   M+EA   FQEM+G     S+  Y+ +I G+ K  KF EA    ++M+   L+   
Sbjct: 1085 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 1144

Query: 210  DTYDGLIQAYGKYKMYDEI 228
            + +D       K K  D I
Sbjct: 1145 EIFDFFSDTKYKGKRPDTI 1163


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 39/295 (13%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  L + G ME+AV   ++M      P    YN++I G+ K  +  EA+ 
Sbjct: 575 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 634

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EM E    P   TY  L     +   +DE    L  M   GC+P+ ITY+ ++    
Sbjct: 635 LLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLC 694

Query: 256 CAGLLKRMEGTYKSMLTKRM---HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            AG +    G ++ M    +   H+ + +  A++D     G +D+  +F +R++ +    
Sbjct: 695 KAGRVTEALGYFEKMARDEVVAPHVIAYS--ALIDGLCKAGRIDEAYEFLERMIRA---- 748

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
                 ++ +V   + + + L D G     RI           L   C ++ RG      
Sbjct: 749 -----GRIPDVVTFSILINGLCDAG-----RIDTG--------LELFCGMAERG------ 784

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                  + ++   N ++ AY    +F     LL E+ T  +  + VT GI+  A
Sbjct: 785 ------CKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKA 833



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++  LC+E  + +A   F+       +P++  Y+++I G SK+ K +EAL  L +
Sbjct: 511 FNS--VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 568

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E+     + TY  ++    K    ++  + L+ M+  GC PD +TYN LI  F     
Sbjct: 569 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQR 628

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           L+   G  + ML    H    T   +       G  D+
Sbjct: 629 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDE 666



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+EG +E A R   EM      P +EI+  ++H   ++G+ +EA  F  ++  + 
Sbjct: 112 IIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIG 171

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + TY+ ++    K    +   M L+++     SP   T+ + +   + AG L    
Sbjct: 172 FTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAY 231

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             + SM    +   + T  A++D     G LD
Sbjct: 232 EFFDSMPQTGVSPNTVTYDALIDGLCKAGKLD 263



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G + +A  AF++   F  +P++  Y+++I G  +  + ++    L EM    
Sbjct: 7   LINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRG 66

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + TY+ L+ A        E    L+ M  +GC P+ IT+ L+I+     G ++   
Sbjct: 67  CAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAF 126

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                M+ +           +L A    G +D+   F++++L
Sbjct: 127 RVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVL 168



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I+ L N+ R  Q  +V++    +E    N F    ++  LC+ G      + F++M
Sbjct: 384 FSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQM 443

Query: 166 -----------------EGFAL----KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
                              F +    +P+L  YN+++ G SK G   +AL  L  M E  
Sbjct: 444 LEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESG 503

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           LSP   T++ ++    K +   +     K     GC P+ +TY+ LI
Sbjct: 504 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLI 550



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 9/191 (4%)

Query: 119  SRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            SR+  Q  ++ + +  +    +  N   ++  L + G  E A +  QEM      P L  
Sbjct: 870  SRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRT 929

Query: 177  YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
            Y  +I G SK  +   A  +  EM   NL P +  Y  LI A+ K    D++D   K+++
Sbjct: 930  YTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCK---ADKVDDAWKLLR 986

Query: 237  LDGCSPDHITYNLLIQEFACA--GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
              G  P    Y+ ++    C   G  K +E   + M +K          ++  AY+  G 
Sbjct: 987  SSGIEPTITMYSTMVDSL-CKNRGTDKALE-VIREMKSKNCEPGIHIWTSLATAYVAEGR 1044

Query: 295  LDKMEKFYKRL 305
            +D+  K    L
Sbjct: 1045 VDEAVKLVNDL 1055



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 92/196 (46%), Gaps = 15/196 (7%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++  +   ++ + ++ ++ +  N      +I  LC+ G ++ A+   ++      +  +
Sbjct: 222 SKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNS---QAGM 278

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             ++S++HG  +  +  EA+  L   K M   P    ++ L+    + +  DE      +
Sbjct: 279 FAFSSLLHGLCQAHRLEEAIQLL---KAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDV 335

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRSSTMV---AILDAYM 290
           MK  GCS D ITYN+L++       L+R+   Y+ + L +R    S  +V    ++    
Sbjct: 336 MKESGCSADVITYNILLKGLC---KLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLC 392

Query: 291 NFGMLDKMEKFYKRLL 306
           N G +++  + Y+R++
Sbjct: 393 NAGRVNQAWEVYERMV 408



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 52/124 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++  L  +G  +EA    + M      P L  +  II G  K G+   A   +
Sbjct: 70  NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 129

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM +    P  + +  L+ A  +    DE     + + L G +PD +TYN ++     A
Sbjct: 130 DEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKA 189

Query: 258 GLLK 261
           G L+
Sbjct: 190 GRLE 193



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 2/178 (1%)

Query: 82  QRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN 141
           QRL + V    ++L+     +   +  +   L  S R  +  ++ D +        N   
Sbjct: 627 QRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD-YMAARGCAPNAIT 685

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
              I+  LC+ G + EA+  F++M     + P +  Y+++I G  K G+ +EA  FL  M
Sbjct: 686 YSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERM 745

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
                 P   T+  LI         D        M   GC  D   YN +I  +   G
Sbjct: 746 IRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKG 803



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAF 162
           H  A    +    ++ +I + ++ + + I   RI +  +  I I  LC+ G ++  +  F
Sbjct: 718 HVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF 777

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M     K  +  YN++I+ Y   G+F+ A   L EMK   ++  + T+  +I+A    
Sbjct: 778 CGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGN 837

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
              DE       +  D    D I+YN LI
Sbjct: 838 DRIDEAVSYFHSIPED--CRDEISYNTLI 864



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN +I+G  K G+  +A     +  +    P   TY  +I    +    D+    L+ M 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 237 LDGCSPDHITYNLLIQEFACAG-------LLKRM 263
             GC+P+ +TYN L+      G       LL+RM
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERM 97


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 151/373 (40%), Gaps = 50/373 (13%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML----CEEGL 154
           G + + +F  +IR +  +   +    VF   KN E    N      I GM+         
Sbjct: 115 GRFARRNFPLLIREITFAGSLQHAVHVFRWMKNQE----NYCARNDIYGMMIRLHARHSQ 170

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  +IYNS+IH +++ G++  A+  +++M    + P   TY+ 
Sbjct: 171 IDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNN 230

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD +T+N+++  F       +    ++ M   
Sbjct: 231 VINACGAAGNWKKALELCKKMTR-NGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGA 289

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +   + T+  ++   +  G   +  +    +   RT    D+V     +    Y+  ++
Sbjct: 290 NIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVV-TYTSIMHSYYVCGKV 348

Query: 334 DD----------------------LGDDLASRIGRTELVWCLRLL----------SHACL 361
           +D                      L    ASR    + +   +LL          S+  L
Sbjct: 349 EDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTL 408

Query: 362 LSHRG-------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           L+  G            +EM     R N+ + N ++ AY     FK    LL E+    +
Sbjct: 409 LNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 468

Query: 415 KPDIVTIGILYDA 427
            PD+V+I  L  A
Sbjct: 469 PPDVVSISTLLTA 481



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 154/367 (41%), Gaps = 21/367 (5%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           LV+     +A+  L     K+  CP  ++ +          +++       +      VF
Sbjct: 305 LVKDGQYGEAIELLNSMREKRTQCPPDVVTYT---------SIMHSYYVCGKVEDCKAVF 355

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM    E  + N  +   ++G     G+  +A+  F+ ++   L+P +  Y ++++ Y +
Sbjct: 356 DMMV-AEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGR 414

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+  +A     EM++ +  P   +Y+ LI AYG   M+ E    L  M+ DG  PD ++
Sbjct: 415 SGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVS 474

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            + L+        + +++   ++  ++ + L      + + +Y+NFG   K  + Y  ++
Sbjct: 475 ISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMM 534

Query: 307 ----NSRTPLKEDLVRKLAEV--YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
               N        L+  L +V  Y ++  F   +D+ D    RI  T+ V+   + S+  
Sbjct: 535 ASNVNPDAVTYNILISGLCKVGKYAESLKF--FEDMVD---LRIPLTKEVYSSLICSYVK 589

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                  +S    M+ +    +V T   ++ AY     +++   L  E+    V+PD + 
Sbjct: 590 QGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAII 649

Query: 421 IGILYDA 427
              L +A
Sbjct: 650 CSSLMEA 656


>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2750; Flags: Precursor
 gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
 gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
 gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
 gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 486

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 36/309 (11%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  +VFDM +     +  E    K++ +L + G    A + F EM    L+P++E+Y ++
Sbjct: 106 QALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTAL 165

Query: 181 IHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y++    ++A   L++MK      P   TY  L++A      +D +D   K M    
Sbjct: 166 LAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERL 225

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKM 298
            +P+ +T N+++  +   G   +ME     ML          TM  IL  + N G +D M
Sbjct: 226 ITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMM 285

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           E +Y++  N     +      L   Y K  M+ ++                         
Sbjct: 286 ESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM------------------------- 320

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N I+ A+  + D K++ +   ++ +  +K D 
Sbjct: 321 ---------SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADT 371

Query: 419 VTIGILYDA 427
            T   L + 
Sbjct: 372 KTFCCLING 380



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           A KP +   N I+  +  +GK +    +  + +   + P++ T++ LI +YGK +MYD++
Sbjct: 261 ACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM 320

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              ++ M+         TYN +I+ FA  G  K ME T+  M ++ M   + T   +++ 
Sbjct: 321 SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLING 380

Query: 289 YMNFGMLDKM 298
           Y N G+  K+
Sbjct: 381 YANAGLFHKV 390



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++   F ++P    +N +I  Y K   +++    +  M+++     + TY+ +I+A+  
Sbjct: 289 YEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFAD 348

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                 +++    M+ +G   D  T+  LI  +A AGL  ++  + +  L  +  +  +T
Sbjct: 349 VGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ--LAAKFEIPENT 406

Query: 282 MV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
               A++ A      L +ME+ Y R+   +          + E Y K  M  ++
Sbjct: 407 AFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKI 460



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G  ++ +K +  +L        +L   L   Y ++ +      + D + S       V+ 
Sbjct: 138 GQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFT 197

Query: 353 LRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE-L 409
              L  AC+ + +   +DS+ +EM+   +  N  T NI+L  Y ++  F  +  +LS+ L
Sbjct: 198 YSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDML 257

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAVYGK 465
            +   KPD+ T+ I+       F   G ++M +     F+      E  T  +++  YGK
Sbjct: 258 VSTACKPDVWTMNIILSV----FGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGK 313

Query: 466 GHFLRYCEEVYSSLEPYSREKKRW---TYQNLIDLVIK-HNGKNLDGTF 510
               R  +++ S +E   + +  W   TY N+I+      + KN++ TF
Sbjct: 314 K---RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTF 359


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 144/346 (41%), Gaps = 32/346 (9%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +N   S I       ++  LC+   + +A    ++M      P++  YN++I+G+ K
Sbjct: 227 DMQRNCAPSVIT---YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 283

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
           +G  +EA++  N+M E + SP   TY+ LI  Y K +   +    L+ M   GC P+ IT
Sbjct: 284 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 343

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN L+     +G         + ML +       T   ++D +   G LD   + ++ L+
Sbjct: 344 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LM 402

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFS------RLDD---LGDDLASRIGRTELVWCLRLLS 357
             R          L ++Y  N M S      R+DD   L + +       ++V    ++S
Sbjct: 403 TDRG--------CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 454

Query: 358 HACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             C  S   +D    V   + +     +V T + ++    K +       LL E+     
Sbjct: 455 GLCKASQ--VDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            PD+V   IL      GF    A ++ K + F  + ++    P V+
Sbjct: 513 APDVVAYTILIH----GF--CKADQLDKSLAFFSEMLDKGCVPTVI 552



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R   Q + +   +EK  I   N+    II  LC+ G ++ A+  +++M+     PS+ 
Sbjct: 179 KARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVI 237

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  ++    K  + ++A L L +M E   +P   TY+ LI  + K    DE  +    M
Sbjct: 238 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297

Query: 236 KLDGCSPDHITYNLLIQEFA 255
             + CSPD  TYN+LI  + 
Sbjct: 298 LENSCSPDVFTYNILIDGYC 317



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 118 RSRQIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R ++  + +D++KN        +      +I   C+    ++A R   EME   + P   
Sbjct: 144 RKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNA 203

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN+II G    G+ + AL+   +M+  N +P   TY  L+ A  K     +  + L+ M
Sbjct: 204 VYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISDASLILEDM 262

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              GC+P+ +TYN LI  F   G +      +  ML         T   ++D Y
Sbjct: 263 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 316



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + +     + M    + P   +Y S+I G  K   ++EA      MK+  
Sbjct: 557 VIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG 616

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            +P   TY+ L+    K    DE    L++M+ DGC PD +TYN +   F
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 89/211 (42%), Gaps = 46/211 (21%)

Query: 80  LIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE 139
           L++R+ +   CP  ++ ++         +++  L  +S+  +  +V+++ +N     ++ 
Sbjct: 433 LLERMTE-AGCPPDVVTYN---------SIVSGLCKASQVDEAYEVYEVLRN-GGYFLDV 481

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
                +I  LC+   +++A +  +EME     P +  Y  +IHG+ K  + +++L F +E
Sbjct: 482 VTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSE 541

Query: 200 MK-----------------------------------EMNLSPQSDTYDGLIQAYGKYKM 224
           M                                    E  ++P +  Y  +I    K   
Sbjct: 542 MLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDS 601

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           YDE     K+MK  GC+P  +TYN+L+ +  
Sbjct: 602 YDEAYELYKLMKQTGCAPTVVTYNVLVDKLC 632



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 79/189 (41%), Gaps = 2/189 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           + FD        + ++F    ++     +   +EA   F+        P    Y+++I+G
Sbjct: 117 KFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLING 176

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + K   F +A   L+EM++  + P +  Y+ +I+        D   +  + M+ + C+P 
Sbjct: 177 FCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN-CAPS 235

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            ITY +L+     +  +       + M+         T   +++ +   G +D+    + 
Sbjct: 236 VITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFN 295

Query: 304 RLL-NSRTP 311
           ++L NS +P
Sbjct: 296 QMLENSCSP 304


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 5/286 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C EGL+EEA      M    LKPSL  YN+II+G  K G++  A   L EM  + 
Sbjct: 7   LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 66

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP + TY+ L+    +   + E       M   G  PD ++++ L+  F+    L +  
Sbjct: 67  LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQAL 126

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
             ++ M  K+  L    ++   ++  Y   G + +  K    +L     L       +  
Sbjct: 127 VYFRDM--KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 184

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRW 381
              K  M +  D L D++  R    +      L+   C   +     S+   M    ++ 
Sbjct: 185 GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 244

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++   N ++  + K+ + +    L   + +R + P+ +T GIL +A
Sbjct: 245 DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 290



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+E ++ +A + F EM      P    + ++IHG+ + G   +AL     M + N
Sbjct: 182 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 241

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y+ LI  + K    ++       M      P+HITY +LI  +   G +    
Sbjct: 242 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 301

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             +  M+ K +     T   ++  Y   G   K ++F  R++
Sbjct: 302 RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMI 343



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           +NI K  I  +N+  +I   C+ G ME+A   +  M    + P+   Y  +I+ Y  +G 
Sbjct: 240 RNI-KPDIVAYNT--LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGH 296

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            +EA    + M E  + P   T + +I+ Y +     + D  L  M   G +PDHI+YN 
Sbjct: 297 VSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 356

Query: 250 LIQE 253
           LI +
Sbjct: 357 LIND 360



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 132 IEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           +E+  + +F +   +I   C++G M +A+  F  M    +KP +  YN++I G+ K+G+ 
Sbjct: 203 VERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEM 262

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +A    + M    + P   TY  LI AY       E      +M   G  P  +T N +
Sbjct: 263 EKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTV 322

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRM---HLRSSTMV 283
           I+ +  +G   + +     M+ K +   H+  +T++
Sbjct: 323 IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 35/77 (45%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN++I  Y + G   EA   +N M +  L P   TY+ +I    K   Y      L  M 
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 63

Query: 237 LDGCSPDHITYNLLIQE 253
             G SPD  TYN L+ E
Sbjct: 64  NIGLSPDTTTYNTLLVE 80


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 36/305 (11%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++++   FD +K IE+   R N      ++  LC      +A R   +M    + P++ 
Sbjct: 202 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y++++  + K GK  EA     EM  M++ P   TY  LI     +   DE +    +M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC  D ++YN LI  F  A  ++     ++ M  + +   + T   ++  +   G +
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           DK ++F+ ++         D      +++  N +   L D G+                 
Sbjct: 382 DKAQEFFSQM---------DFFGISPDIWTYNILLGGLCDNGE----------------- 415

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           L  A +        +  +M+  ++  ++ T   ++    K    +    L   L  + +K
Sbjct: 416 LEKALV--------IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK 467

Query: 416 PDIVT 420
           PDIVT
Sbjct: 468 PDIVT 472



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 55/120 (45%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G +++A   F +M+ F + P +  YN ++ G    G+  +AL+   +M++  +     
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  +I+   K    +E       + L G  PD +TY  ++      GLL  +E  Y  M
Sbjct: 437 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 104/280 (37%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C    + +AV    +M     KP +  YN+II    K  + N+A  F  E++   
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L+        + +    L  M     +P+ ITY+ L+  F   G +   +
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+   +     T  ++++       +D+  + +  +++            LA+V 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC---------LADVV 331

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
             N + +     G   A R+                     G+  + REM    +  N  
Sbjct: 332 SYNTLIN-----GFCKAKRV-------------------EDGM-KLFREMSQRGLVSNTV 366

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T N ++  + +  D    +   S++    + PDI T  IL
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC+ G +E+A+  F++M+   +   +  Y ++I G  K GK  EA      +    
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           L P   TY  ++       +  E++     MK +G
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 66/359 (18%), Positives = 144/359 (40%), Gaps = 13/359 (3%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R  K   R  ++    D++ ++ KSR    I +FN  +++  + +    +  +   ++ME
Sbjct: 55  RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFN--RLLSAIVKLKKYDVVISLGKKME 112

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY 225
              ++  L  +N +I+ +    + + AL  L +M ++   P   T   L+  + +  ++ 
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D + +  KM+++ G  PD + YN +I        +      +K +  K +     T  A+
Sbjct: 173 DAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           ++   N        +    ++  +          L + ++KN       +L +++     
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 291

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTTANIILLAYLKMKDFKHL 402
             ++V    L++  CL  H  ID   +    M S     +V + N ++  + K K  +  
Sbjct: 292 DPDIVTYSSLINGLCL--HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
             L  E+  R +  + VT   L        D   A E + ++ F   + +I T  ++L 
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 408


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AVI  L N  R+ +   +F+ M  N  K R   +N+  ++    + GL+++A     EME
Sbjct: 310 AVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNA--LLRGYVKAGLLKDAEFVVSEME 367

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              + P+ + Y+ +I  Y   G++  A + L EM+  N+ P +  +  ++ +Y     + 
Sbjct: 368 RSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQ 427

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           +    L+ M+  G  PD + YN++I  F     L     T+  ML++ +   + T   ++
Sbjct: 428 KSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLI 487

Query: 287 DAYMNFGMLDKMEKFYKRLL 306
           D +   G  D+ E+ ++ ++
Sbjct: 488 DCHCRAGKHDRAEELFEEMM 507



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 36/288 (12%)

Query: 141 NSQKIIGMLCEEGLMEEAV--RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           N   II  L  +  ++ A+  + ++E+E   L+  +++ N II G++K G  ++AL FL 
Sbjct: 235 NYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLG 294

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            ++   LS ++ T   +I A G      E +   + M+ +G  P    YN L++ +  AG
Sbjct: 295 VVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAG 354

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLK  E     M    +     T   ++DAY N G          R  ++R  LKE    
Sbjct: 355 LLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAG----------RWESARIVLKE---M 401

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           + + V    Y+FSR+      L+S   + E  W                  V+REME++ 
Sbjct: 402 EASNVQPNAYVFSRI------LSSYRDKGE--WQKSF-------------QVLREMENSG 440

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           VR +    N+++  + K     H       + +  ++PD VT   L D
Sbjct: 441 VRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLID 488



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + GL E+AV AF+ M    LKPSL   NS+I+ + +  +  EA   L  MKE +
Sbjct: 591 LINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKEND 650

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           L P   TY  L++A  + + +D++    + M L GC+PD 
Sbjct: 651 LKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDR 690



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 55/121 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G  + A   F+EM      P    +N +I+ +    ++++    L  M+   L P S
Sbjct: 491 CRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNS 550

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI  YGK   +++   CL  MK  G  P    YN LI  +A  GL ++    +++
Sbjct: 551 VTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRA 610

Query: 270 M 270
           M
Sbjct: 611 M 611



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    L P+   Y ++I  Y K G+FN+A+  L++MK   L P S  Y+ LI AY +  +
Sbjct: 541 MRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGL 600

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            ++     + M++DG  P  +  N LI  F 
Sbjct: 601 SEQAVSAFRAMRVDGLKPSLLALNSLINAFG 631



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 70/151 (46%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+  F  M    ++P    +N++I  + + GK + A     EM E   SP + T++ 
Sbjct: 461 LDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNI 520

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I ++G  + +D++   L  M+  G  P+ +TY  LI  +  +G           M    
Sbjct: 521 MINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAG 580

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +   S+   A+++AY   G+ ++    ++ +
Sbjct: 581 LKPSSTMYNALINAYAQRGLSEQAVSAFRAM 611



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I +  + G   +A+    +M+   LKPS  +YN++I+ Y++ G   +A+   
Sbjct: 549 NSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAF 608

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M+   L P     + LI A+G+ +   E    L+ MK +   PD +TY  L++     
Sbjct: 609 RAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRV 668

Query: 258 GLLKRMEGTYKSML 271
               ++   Y+ M+
Sbjct: 669 EKFDKVPSVYEEMI 682



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 126/307 (41%), Gaps = 35/307 (11%)

Query: 130 KNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           K +E S +  N +   +I+    ++G  +++ +  +EME   ++P    YN +I  + K 
Sbjct: 399 KEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKF 458

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              + A+   + M    + P + T++ LI  + +   +D  +   + M   G SP + T+
Sbjct: 459 NCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTF 518

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEK 300
           N++I  F        ++     M ++ +   S T   ++D Y   G        LD M+ 
Sbjct: 519 NIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKA 578

Query: 301 --------FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
                    Y  L+N+         R L+E  +  +   R+D L   L +          
Sbjct: 579 AGLKPSSTMYNALINAYAQ------RGLSEQAVSAFRAMRVDGLKPSLLA---------- 622

Query: 353 LRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
           L  L +A     R  +  +V++ M+   ++ +V T   ++ A ++++ F  +  +  E+ 
Sbjct: 623 LNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMI 682

Query: 411 TRHVKPD 417
                PD
Sbjct: 683 LSGCTPD 689


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 38/280 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +++A   F +M     +P+   +  ++ GY + G  ++ L  L EM+ + 
Sbjct: 62  LIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLG 121

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP    Y+ LI ++ K    D+ +  +  M+ DG SPD +T+N  I     +G +    
Sbjct: 122 FSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEAS 181

Query: 265 GTYKSM-LTKRMHLRSSTMVA---ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
             ++ M + + + L    ++    +L  +   GML++    ++++      + E+L+ + 
Sbjct: 182 RIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM-----KVSENLMNR- 235

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
            E Y                         +W L L+    LL  +    V++EM    + 
Sbjct: 236 -ESYN------------------------IWLLGLVRIGKLLEAQ---LVLKEMVDMGME 267

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            NV + NI++    K       R+L+  + +  V PD VT
Sbjct: 268 PNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVT 307



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G + EA + F EM G  L+P   IY+  IH + K GK + A   L +M++  
Sbjct: 439 IISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKG 498

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +    TY+ LI   G      EI   +  M+  G SPD   YN ++      G +K   
Sbjct: 499 CNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAP 558

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                ML K +    S+   ++ A+        +++ ++  LN
Sbjct: 559 SVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALN 601



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 143/346 (41%), Gaps = 44/346 (12%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F  +I  L +S       ++FD  K  EK    NE++   ++   C  G   + +    E
Sbjct: 59  FNVLIGLLCDSGCLDDARELFD--KMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGE 116

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+  +YN++I  + K GK ++A   ++EM++  LSP   T++  I A      
Sbjct: 117 MRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGK 176

Query: 225 YDEIDMCLKMMKLDGC----SPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRS 279
             E     + M++D       P+ ITYNL++  F   G+L+     ++ M +++ +  R 
Sbjct: 177 VLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRE 236

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEVYIKNYMFSRLDDLGD 338
           S  + +L   +  G          +LL ++  LKE +   +   VY  N +   L   G 
Sbjct: 237 SYNIWLL-GLVRIG----------KLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGV 285

Query: 339 DLASRIGRTELVWCLRLLSHACLLS-------------HRG----IDSVVREMESAKVRW 381
              +R+        +RL++ + +L              H G     ++V+REM       
Sbjct: 286 LFDARM-------LMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSP 338

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N  T NI+L +  K         LL ++  +    D VT  I+ D 
Sbjct: 339 NNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDG 384



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G + EA    +EM    ++P++  YN ++ G  K G   +A + +  M    + P + TY
Sbjct: 249 GKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTY 308

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+  Y       E +  L+ M  DGCSP++ T N+L+      G +   E   + M  
Sbjct: 309 TTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNE 368

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDK 297
           K   + + T   ++D   N G LDK
Sbjct: 369 KGYVIDTVTCNIVIDGLCNNGKLDK 393



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 68/182 (37%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P L  Y++II G  K G+  EA     EM   NL P S  YD  I ++ K          
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           LK M+  GC+    TYN LI        +  + G    M  + +    S    +L +   
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            G +         +L             L + + K   FS +D++ +   +  G  E ++
Sbjct: 551 GGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALY 610

Query: 352 CL 353
            L
Sbjct: 611 SL 612



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N ++   ++  LC+ G++ +A    + M    + P    Y +++HGY   GK +EA   L
Sbjct: 269 NVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVL 328

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM     SP + T + L+ +  K     E +  L+ M   G   D +T N++I      
Sbjct: 329 REMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNN 388

Query: 258 GLLKR 262
           G L +
Sbjct: 389 GKLDK 393



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 123/303 (40%), Gaps = 30/303 (9%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS+ +YN ++   +K G+ +       +M    +SP++ T++ LI         D+    
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAY 289
              M   GC P+  ++ +L++ +  AG   +       M  +R+    + +V   ++ ++
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEM--RRLGFSPNKVVYNTLISSF 136

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTE 348
              G  D  EK    +   +  L  D+V   A +       S L   G  L ASRI R  
Sbjct: 137 CKEGKTDDAEKLVDEM--RKDGLSPDVVTFNARI-------SALCSSGKVLEASRIFRDM 187

Query: 349 LVWCLRLLSHACLLSH---------RGIDSVVREM-ESAKVRWNV---TTANIILLAYLK 395
            +  +  L    ++++          G+    R + E  KV  N+    + NI LL  ++
Sbjct: 188 QIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVR 247

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVE 452
           +      +++L E+    ++P++ +  I+ D      + FD    + +    G L  TV 
Sbjct: 248 IGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVT 307

Query: 453 INT 455
             T
Sbjct: 308 YTT 310



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 105/273 (38%), Gaps = 27/273 (9%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  L +EG + EA    Q+M            N +I G    GK ++A+  +
Sbjct: 339 NNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIV 398

Query: 198 NEM---KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           N M       L    ++Y GL+      K                C PD I+Y+ +I   
Sbjct: 399 NGMWTHGSAALGNLGNSYIGLVDDSDSRKK---------------CMPDLISYSTIISGL 443

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRT 310
             AG +   +  +  M+ K +   S+     + ++   G +      ++   K+  N   
Sbjct: 444 CKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTL 503

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS 369
                L+  L     KN +F  +  L D++  R    ++     +LS  C     +   S
Sbjct: 504 QTYNSLIMGLGS---KNQIF-EIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPS 559

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           V+ EM    +  N+++ +I++ A+ K  DF  +
Sbjct: 560 VLDEMLQKGISPNISSFSILIKAFCKACDFSAV 592


>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 120/253 (47%), Gaps = 4/253 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA   F EM+   +K +   +N +++ YS+  +       + EM++  L P +
Sbjct: 385 CKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNA 444

Query: 210 DTYDGLIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
            +Y  LI AYGK K   ++  D  LKM K DG  P   +Y  LI  ++ +G  ++    +
Sbjct: 445 KSYTCLISAYGKQKNMSDMAADAFLKMKK-DGIKPTSHSYTALIHAYSVSGWHEKAYAAF 503

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++M  + +     T  A+LDA+   G    + K +K +   +          L + + K+
Sbjct: 504 ENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAKH 563

Query: 328 YMFSRLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
             +    D+    A+  +  T + + + + ++A    H  +  ++ EM +  ++ +  T 
Sbjct: 564 GHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTY 623

Query: 387 NIILLAYLKMKDF 399
           + ++ A+L+++DF
Sbjct: 624 STMIYAFLRVRDF 636



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 14/284 (4%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A + F++M G  +K   E+  ++I  +   G  +EAL+ L+E+++  +S  +  Y+ L
Sbjct: 321 KDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTL 380

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY K    +E +     MK  G      T+N+L+  ++     + +E     M    +
Sbjct: 381 MDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGL 440

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY---IKNYMFSR 332
              + +   ++ AY       K +       ++   +K+D ++  +  Y   I  Y  S 
Sbjct: 441 KPNAKSYTCLISAY------GKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSG 494

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-----VVREMESAKVRWNVTTAN 387
             +        + R  +   +   +       R  D+     + + M   KV     T N
Sbjct: 495 WHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFN 554

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            ++  + K   +K  R ++S+     + P ++T  +L +A   G
Sbjct: 555 TLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARG 598



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 118 RSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R+     +  +WK      +E +R+  FN+  ++    + G  +EA     +     L P
Sbjct: 527 RAGDTQTLMKIWKLMRRYKVEGTRVT-FNT--LVDGFAKHGHYKEARDVISKFANVGLHP 583

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           ++  YN +++ Y++ G+ ++    L EM   NL P S TY  +I A+
Sbjct: 584 TVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAF 630


>gi|226492862|ref|NP_001141929.1| uncharacterized protein LOC100274078 [Zea mays]
 gi|194706478|gb|ACF87323.1| unknown [Zea mays]
 gi|414585156|tpg|DAA35727.1| TPA: hypothetical protein ZEAMMB73_571639 [Zea mays]
          Length = 442

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 29/248 (11%)

Query: 101 WTKDHFWAVIR--------------------FLKNSSRSRQIPQVFDMWKNIEKS--RIN 138
           W K H WA +R                    ++   ++S +  + F ++K +++   RI+
Sbjct: 187 WAKAHAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRID 246

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
                  I  +     ++ AVR +++M     KP++  YN+II  + K G+F E   F+ 
Sbjct: 247 TVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQ 306

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +M++    P   TY    Q   + +   E+    + M   GC P   TY +LI+ F   G
Sbjct: 307 QMRKTGCKPDVLTYHCFFQYLSRPQ---EVLGLFEKMLERGCQPRMDTYVMLIKRFGRWG 363

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN---SRTPLKED 315
            L+ +   +K+M  + +   +    A++DA +  GM+D   K+ +++L    S  P KE 
Sbjct: 364 FLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEKMLAKGLSPKPRKE- 422

Query: 316 LVRKLAEV 323
           L  KL E 
Sbjct: 423 LGTKLPEA 430



 Score = 38.5 bits (88), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 365 RGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           +G+DS VR   +M  A  + N+ T N I+  + K   FK     + ++     KPD++T 
Sbjct: 261 QGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTGCKPDVLTY 320

Query: 422 GILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481
              +       +  G  E     G       ++T  +++  +G+  FLR    V+ ++E 
Sbjct: 321 HCFFQYLSRPQEVLGLFEKMLERGC---QPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEE 377

Query: 482 YSREKKRWTYQNLIDLVIK 500
                  + Y  LID +++
Sbjct: 378 QGLSPDAFAYNALIDALLQ 396


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC  G    A++ F  MEG     + + YN II G    G   +A++  
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 473

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +M   P   TY+ LI  Y      +     L +MK +GC PD  TYN L+  F+  
Sbjct: 474 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 533

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+     ++ M+   ++    +   ++D +   G +D      +R+         +  
Sbjct: 534 GKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESY 593

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMES 376
             +     K   FS  + + D +A +     ++    L+   C          +  +ME 
Sbjct: 594 NAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 653

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            K   N+ T + ++    +        +LL E+  + + PD VT   L D 
Sbjct: 654 RKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 704



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAF 162
           + + AVI  L   +R  +  ++ D  K  E+  + N      +I  LC  G  + A + F
Sbjct: 591 ESYNAVINGLSKENRFSEAEKICD--KMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 648

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +ME     P+L  Y+S+I+G  + GK +EA + L EM+   L+P   T+  LI  +   
Sbjct: 649 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVL 708

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
              D   + L+ M   GC P++ TY++L++
Sbjct: 709 GRIDHAFLLLRRMVDVGCKPNYRTYSVLLK 738



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 35/205 (17%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+   +++    + G +E A   FQEM    L P+   Y ++I G+SK GK + AL  L
Sbjct: 519 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLL 578

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID-MCLKMMK-------------LDG---- 239
             M+EM  +P  ++Y+ +I    K   + E + +C KM +             +DG    
Sbjct: 579 ERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRN 638

Query: 240 -----------------CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                            C P+  TY+ LI      G     E   K M  K +     T 
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLN 307
            +++D ++  G +D      +R+++
Sbjct: 699 TSLIDGFVVLGRIDHAFLLLRRMVD 723



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           ++E A   +++M    ++PSL  +N++I+  SK GK  EA L L+++ + +LSP   TY 
Sbjct: 220 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 279

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI  + + +  D        M  +GC P+ +TY+ LI      G +       + M+ K
Sbjct: 280 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 339



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLC 150
           QI Q+D   + D F      +    R+R +   F ++  +  E    N      +I  LC
Sbjct: 265 QIFQYD--LSPDVF-TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLC 321

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
            EG ++EA+   +EM    ++P++  Y   I     I    EA+  +  MK+    P   
Sbjct: 322 NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 381

Query: 211 TYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           TY  LI    +  K+   I +  KM+K +G  P+ +TYN LI E    G
Sbjct: 382 TYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGG 429



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 26/172 (15%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F ++ ++EK +   N +    +I  LC+EG  +EA    +EME   L P    + S+I 
Sbjct: 644 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLID 703

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM------------------ 224
           G+  +G+ + A L L  M ++   P   TY  L++   K  +                  
Sbjct: 704 GFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSP 763

Query: 225 ------YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
                 ++ +   L  M   GC P   TY+ L+      G     E   K M
Sbjct: 764 HEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDM 815



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    ++ A   F  M      P+   Y+++I+G    G+ +EAL  L EM E  + P  
Sbjct: 286 CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 345

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY   I A    +  +E    +  MK  GC P+  TY  LI   +  G L+   G Y  
Sbjct: 346 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 405

Query: 270 MLTKRMHLRSSTMVAILD 287
           ML + +   + T  A+++
Sbjct: 406 MLKEGLVPNTVTYNALIN 423



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M     +P+L+ Y++++ G  + G+F EA   + +MKE    P  + Y  L+ A+ K   
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL- 838

Query: 225 YDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             E+D  LK+   ++  G       Y  LI     AG ++  +  + +ML K  +     
Sbjct: 839 --EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIV 896

Query: 282 MVAILDAYMNFGMLD 296
              ++D  +  G LD
Sbjct: 897 WTVLVDGLLKEGELD 911


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + +A+  F+EM+     P +  YN++I  Y + G+   A      M+E   +P + TY+ 
Sbjct: 212 LSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNS 271

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ A+ +    +E++    MM+   CS D ITYN +I  +  AG+ ++ E  Y  M  + 
Sbjct: 272 VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEG 331

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
               S T   ++D     G +++    ++ +L S+          +   Y K  MF+
Sbjct: 332 RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFT 388



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G    A   F+ M+     P    +N++I  YS+     EA   L EM +  
Sbjct: 827 MISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTG 886

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI AYG+ + Y++ ++  K +   GC PD   YN++I  +  AG  +++E
Sbjct: 887 NAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIE 946

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              + M         +T+  ++D+Y   G   K E+  + L
Sbjct: 947 EIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETL 987



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 2/173 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +    G +E A   F+ M+     P    YNS++H +++ G+  E       M++  
Sbjct: 237 MISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDAR 296

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            S    TY+ +I  YGK  M+ + +     MK +G  PD +T+ +LI     AG +    
Sbjct: 297 CSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAA 356

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++ ML  ++        A++ AY    M    E  Y  +L  R  ++ DL+
Sbjct: 357 AMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCML--RAGVRPDLL 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 153 GLMEEAVRA--FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           G M+E + +   Q++    L+P    YN++I   S   + ++A+L   EM+     P   
Sbjct: 173 GGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIW 232

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ +I  YG+    +      ++M+  G +PD +TYN ++  FA  G ++ +E     M
Sbjct: 233 TYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMM 292

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              R      T   ++  Y   GM  K E+ Y ++
Sbjct: 293 RDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQM 327



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 142/360 (39%), Gaps = 42/360 (11%)

Query: 60  STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRS 119
           +T   + L+ +Y E        + L+  V+  LQ      ++  + F         + ++
Sbjct: 680 NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAF-------GRAGKA 732

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           ++I + F     +  S  N      I       G +EEA   +++M+     PS++++ +
Sbjct: 733 KEISEFFQRLPEMGISP-NSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKA 791

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++  YS+     +A   + ++K+  L    D Y+ +I  Y K   Y    +  K M+  G
Sbjct: 792 LLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIG 851

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           CSPD  T+N LI  ++   +++  +   + M+        ST   ++ AY      +  E
Sbjct: 852 CSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAE 911

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
             +K +  + T  K D     A  Y  N M +     G+                     
Sbjct: 912 LVFKSI--AETGCKPD-----ATAY--NVMINVYRKAGE--------------------- 941

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
               HR I+ ++ +M+      ++TT ++++ +Y K         +L  LP   + PD +
Sbjct: 942 ----HRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAI 997



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 141/344 (40%), Gaps = 24/344 (6%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           +  F +K S  ++ +II  Y K+  +  A +   ++++   +  +  Y  L+ AY +   
Sbjct: 638 LHAFDVKDS-AMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGN 696

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           ++     L  M   G  P+    N +++ F  AG  K +   ++ +    +   S T V 
Sbjct: 697 FERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVV 756

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           I  A+   G L++    Y+++  +       + + L  +Y +  +   +D   ++L   I
Sbjct: 757 IFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETV--EID--AEELVKDI 812

Query: 345 GRTELVWCLRLLSHACLL-----SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            +  L   + + +H   L     S+R    V + M+      + TT N +++ Y + +  
Sbjct: 813 KKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMV 872

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV-EINTDP- 457
           +  + LL E+      P+I T   L  A        G L+ ++    +FK++ E    P 
Sbjct: 873 QEAQALLREMIKTGNAPNISTYTTLISA-------YGRLQAYEDAELVFKSIAETGCKPD 925

Query: 458 -----LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
                +++ VY K    R  EE+   ++    E    T   L+D
Sbjct: 926 ATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMD 969



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 16/271 (5%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALL--FLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           M+    +P L  +N +I   ++ G   E L    L ++    L P + TY+ LI A    
Sbjct: 151 MQDRGCRPDLVTFNIVIKARTR-GGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLN 209

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               +  +  + M+  GC PD  TYN +I  +  AG ++     ++ M  +     + T 
Sbjct: 210 NRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTY 269

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
            ++L A+   G ++++E+    + ++R    E     +  +Y K  M  + ++L   +  
Sbjct: 270 NSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKE 329

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLK 395
             GR     C   ++   L+   G    V E       M  ++VR  +   + ++ AY K
Sbjct: 330 E-GR-----CPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAK 383

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              F       S +    V+PD++   ++ D
Sbjct: 384 ADMFTDAEHTYSCMLRAGVRPDLLAYSVMLD 414



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/346 (18%), Positives = 138/346 (39%), Gaps = 5/346 (1%)

Query: 154  LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
            L + A   F++++      +   Y++++  Y++ G F  A   L+ M    L P +   +
Sbjct: 661  LWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCAN 720

Query: 214  GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             +++A+G+     EI    + +   G SP+  T+ ++   F+  G L+     Y+ M   
Sbjct: 721  YVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEA 780

Query: 274  RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK--NYMFS 331
                      A+L  Y    +    E+  K +  +   L  D+   +  +Y K  +Y  +
Sbjct: 781  GFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNA 840

Query: 332  RLDDLG-DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             L   G  ++      T     + L S   ++      +++REM       N++T   ++
Sbjct: 841  ALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQE--AQALLREMIKTGNAPNISTYTTLI 898

Query: 391  LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
             AY +++ ++   ++   +     KPD     ++ +  R   +     E+ +++      
Sbjct: 899  SAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFE 958

Query: 451  VEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
              + T  +++  YGKG      EEV  +L           Y ++I+
Sbjct: 959  PSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIIN 1004



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/296 (18%), Positives = 111/296 (37%), Gaps = 2/296 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++    E G  E A RA   M    L+P+    N ++  + + GK  E   F   + EM 
Sbjct: 687 LLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMG 746

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP S T+  +  A+ +    +E     + MK  G SP    +  L+  ++   +    E
Sbjct: 747 ISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAE 806

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K +    + L       ++  Y   G        +K +              L  +Y
Sbjct: 807 ELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLY 866

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNV 383
            +N M      L  ++        +     L+S +  L ++   + V + +     + + 
Sbjct: 867 SRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDA 926

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           T  N+++  Y K  + + +  ++ ++     +P + TI +L D+   G   TG  E
Sbjct: 927 TAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKG-GATGKAE 981



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 140  FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            FN+  +I +     +++EA    +EM      P++  Y ++I  Y ++  + +A L    
Sbjct: 859  FNT--LIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKS 916

Query: 200  MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            + E    P +  Y+ +I  Y K   + +I+  ++ MK+DG  P   T ++L+  +   G 
Sbjct: 917  IAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGA 976

Query: 260  LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              + E   +++    M   +    +I+++++N
Sbjct: 977  TGKAEEVLETLPEIGMSPDAIHYTSIINSHLN 1008



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 86  KKVSCPLQILQHDGDWTKDH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
           +  S   +I+Q  G +T D   + +V+       R  ++ ++  M ++   S  +E    
Sbjct: 248 EAASSIFRIMQEQG-FTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS-DEITYN 305

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            +I M  + G+  +A   + +M+     P    +  +I    K G  NEA     +M + 
Sbjct: 306 TMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 365

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P    +  +I AY K  M+ + +     M   G  PD + Y++++  F  AG+ ++ 
Sbjct: 366 QVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKC 425

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              YK+M+   +    S    ++  +     + ++E   K ++ 
Sbjct: 426 IILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEMVQ 469



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 6/203 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  ++     +G +EE  R    M           YN++IH Y K G   +A     +
Sbjct: 269 YNS--VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQ 326

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MKE    P S T+  LI   GK    +E     + M      P    ++ +I  +A A +
Sbjct: 327 MKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADM 386

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
               E TY  ML  R  +R   +    +LD +   GM +K    YK ++ S    +  + 
Sbjct: 387 FTDAEHTYSCML--RAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVY 444

Query: 318 RKLAEVYIKNYMFSRLDDLGDDL 340
             +  V+ +    + +++L  ++
Sbjct: 445 AIMVRVFYQKSSVAEIENLSKEM 467


>gi|449458139|ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 677

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 77/350 (22%)

Query: 134 KSRINEFNSQK---------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
            S IN F+S           ++    EEGL+ EA+  F  M+   LKP L  +N+++ G+
Sbjct: 220 SSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGF 279

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCS 241
           ++ G+ N AL +L  M+E  L P+ ++++G+I      G +K  D +D+ + M+     +
Sbjct: 280 ARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFK--DALDVFINMLLFPE-N 336

Query: 242 PDHITYNLLIQEFACAGL----LKRMEGTY--KSMLTKRMHLRSSTMVAILDAYMNFGML 295
           P+ +T   ++   ACAGL    L R    Y  K  L   +++  S    ++D Y   G  
Sbjct: 337 PNSVTVASILP--ACAGLRDLGLGRAVHAYALKCELCTNIYVEGS----LVDMYSKCGQD 390

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           D+ E+ + +       L  +++                       A+ + + +  W L  
Sbjct: 391 DRAEEIFAKAEKKNITLWNEII-----------------------ATYMNQGKNSWALEH 427

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                           R M+   ++ +V T N +L  Y K         LLS++   ++ 
Sbjct: 428 F---------------RSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLV 472

Query: 416 PDIVTIGILYDARRIGFDGTG----ALEMWKRI----GFLFKTVEINTDP 457
           P+++++ +L      GF  +G    ALE+ + +      L KT+     P
Sbjct: 473 PNVISLNVLVS----GFQQSGLNYEALELCQTMLCTGSLLNKTIAFPVIP 518



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           S+  Q  +  +++   EK  I  +N  +II     +G    A+  F+ M+   LKP +  
Sbjct: 385 SKCGQDDRAEEIFAKAEKKNITLWN--EIIATYMNQGKNSWALEHFRSMQHHGLKPDVVT 442

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMM 235
           YN+++ GY+K G+  EA   L++M + NL P   + + L+  + +  + Y+ +++C  M+
Sbjct: 443 YNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGFQQSGLNYEALELCQTML 502


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N ++   +I +L   G   EA++ ++ M    +KPS++ Y++++    + G   + +  
Sbjct: 199 LNAYSYNGLIHLLLP-GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNL 257

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EMK + L P   TY   I+A G+ +  D+     K M  +GC PD ITY +LI     
Sbjct: 258 LEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCA 317

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           AG L + +  Y  M          T + ++D +   G L+ +++F+  +
Sbjct: 318 AGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEM 366



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 8/184 (4%)

Query: 117  SRSRQIPQVFDMWKNIEKSRIN-EFNSQKI-IGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             +S +I    +++K + K  I  +  S  I +  LC  G ++EAV+ F+E++   L P  
Sbjct: 947  GKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDT 1006

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
              YN II+G  K  + +EAL   +EMK   +SP   TY+ LI   G   +  ++D+ +KM
Sbjct: 1007 VSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLG---IAGKVDVAVKM 1063

Query: 235  ---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
               ++L G  P   TYN LI+  + +G   +    +K M+       + T   + + Y  
Sbjct: 1064 YEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPR 1123

Query: 292  FGML 295
             G++
Sbjct: 1124 AGLV 1127



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%)

Query: 77   LNALIQ--RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
            ++AL++   LNK +    +++  D   T   +  +I  L  + RS Q  ++F+   +   
Sbjct: 873  ISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC 932

Query: 135  SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
               N      +I    + G ++ A   F++M    ++P L+ Y  ++      G+ +EA+
Sbjct: 933  GP-NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAV 991

Query: 195  LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             +  E+K   L P + +Y+ +I   GK +  DE       MK  G SPD  TYN LI   
Sbjct: 992  QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHL 1051

Query: 255  ACAG 258
              AG
Sbjct: 1052 GIAG 1055



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 171/415 (41%), Gaps = 28/415 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A++  L     +R+I  + +  K+I   R N +     I  L     +++A   F+EM
Sbjct: 238 YSALMVALGRRGDTRKIMNLLEEMKSI-GLRPNIYTYTICIRALGRARRIDDAWGIFKEM 296

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P +  Y  +I      GK ++A     +M+  + SP   TY  L+  +GK    
Sbjct: 297 DDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDL 356

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLRSST 281
           + +      M++DG +PD +TY +LI+    +G + R       M TK     +H  ++ 
Sbjct: 357 ETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTM 416

Query: 282 MVAILDAYM---NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           +  +L A        +L+ ME    +      P     V    + Y K+   ++  D  +
Sbjct: 417 ICGLLKARRLDEALELLENMESLGVK------PTAFSYVL-FIDYYGKSGDPAKAIDTFE 469

Query: 339 DLASRIGRTELVWC---LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            +  R     +  C   L  L+    +S    + +  ++    +  +  T N+++  Y K
Sbjct: 470 TMKKRGIMPSIAACNASLYTLAETGRISEA--EDIFNDLHKCGLSPDSVTYNMLMKCYSK 527

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
                    LLSE+ ++  +PD++     I  LY A R+      A +M+ R+  L    
Sbjct: 528 AGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRV----DAAWKMFGRLKNLKLAP 583

Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506
            + T  ++L   GK   +    E++ S+          T+ +L+D + K++  +L
Sbjct: 584 TVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDL 638



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 24/293 (8%)

Query: 145  IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            +I +LC+     +A   F +  +   + P+LE YN ++ G        +AL    +MK  
Sbjct: 766  LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
               P + TY+ L+ A+GK K  +++      M+  GC P+ IT+N++I     +  L + 
Sbjct: 826  GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKA 885

Query: 264  EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR- 318
               Y  +++        T   ++D  +  G  ++  K ++ +L+      + +   L+  
Sbjct: 886  LDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILING 945

Query: 319  --KLAEVYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
              K  E+     +F ++  + +  DL S    T LV CL      C+     ID  V+  
Sbjct: 946  FGKSGEIDFACELFKKMVKEGIRPDLKS---YTILVECL------CITGR--IDEAVQYF 994

Query: 375  ESAKVRW---NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            E  K+     +  + N I+    K +       L SE+  R + PD+ T   L
Sbjct: 995  EELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNAL 1047



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  L + G ++ A + F  ++   L P++  YN ++ G  K GK  +AL     M E
Sbjct: 554 NSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTE 613

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLI 251
               P + T++ L+    K    D +D+ LKM   M +  C+PD +TYN +I
Sbjct: 614 SGCPPNTITFNSLLDCLSKN---DAVDLALKMFCRMTMMNCNPDVLTYNTII 662



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGF 168
            L    +S++I +++D++  + +SR  E N+     II  L +   + +A+  + E+   
Sbjct: 837 LLDAHGKSKRINKLYDLYSEM-RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG 895

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              P+   Y  +I G  K G+  +A+    EM +    P S  Y+ LI  +GK    D  
Sbjct: 896 DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFA 955

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               K M  +G  PD  +Y +L++     G
Sbjct: 956 CELFKKMVKEGIRPDLKSYTILVECLCITG 985


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C    +E+A+  F EM      P   +Y ++I G S+ GK + A   L
Sbjct: 485 NAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVL 544

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++MKE   SP   +++ LI  + +    DE    LK M+  G  PD +TYN LI  F+  
Sbjct: 545 SKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKT 604

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP 311
           G         K M+ + +     T  A++ AY   G LD+  K ++ + + S+ P
Sbjct: 605 GDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 25/299 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEG-----FALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +I  LC+   ++EA+  F++M G     F ++P +  YN++I G  K+G+  E L  +  
Sbjct: 346 LINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVER 405

Query: 200 MK-EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M+ +    P + TY+ LI  Y K  M +        M  DG  P+ +T N L+      G
Sbjct: 406 MRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHG 465

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSRTP---LKE 314
            +      +  M  K +   + T  A++ A+ N   ++K ME F + L    +P   +  
Sbjct: 466 RINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYY 525

Query: 315 DLVRKLAEVYI---KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID--- 368
            L+  L++       +++ S++ + G          ++V    L++  C      +D   
Sbjct: 526 TLISGLSQAGKLDRASFVLSKMKEAG-------FSPDIVSFNVLINGFC--RKNKLDEAY 576

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +++EME+A ++ +  T N ++  + K  DF     L+ ++    + P +VT G L  A
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 119/292 (40%), Gaps = 20/292 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  ++E A   F +M    + P++   N+++ G  K G+ N A+ F NEM+   
Sbjct: 422 LIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKG 481

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L   + TY  LI+A+      ++       M   GCSPD I Y  LI   + AG L R  
Sbjct: 482 LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRAS 541

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M          +   +++ +     LD+  +  K + N+   +K D V       
Sbjct: 542 FVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAG--IKPDGV------- 592

Query: 325 IKNYMFSRLDDLGD-DLASRI-------GRTELVWCLRLLSHACLLSHRGIDS--VVREM 374
             N + S     GD   A R+       G    V     L HA  L+    ++  + R+M
Sbjct: 593 TYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDM 652

Query: 375 ES-AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
            S +KV  N    NI++ +  +         L+ ++  + VKP+  T   ++
Sbjct: 653 SSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMF 704



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C  G ++EA++ F++M   + + P+  IYN +I+   +  + + AL  +++MK  
Sbjct: 632 LIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVK 691

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            + P ++T++ + +   +     +    +  M    C+PD+IT  +L +  +  G
Sbjct: 692 GVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVG 746



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++I  LC  G  + A      +            N+++    +  +F      L EMKEM
Sbjct: 275 QLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEM 334

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-------CSPDHITYNLLIQEFAC 256
           ++ P   T+  LI    K++  DE     +  K++G         PD ITYN LI     
Sbjct: 335 DIQPNVVTFGILINHLCKFRRVDEALEVFE--KMNGGESNGFLVEPDVITYNTLIDGLCK 392

Query: 257 AGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            G  +   G  + M ++ R    + T   ++D Y    M++   + + ++     P
Sbjct: 393 VGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP 448


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+    R++ + + FD+++ + ++ +  +      ++  LC +G   EA   F+EM+   
Sbjct: 245 FIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG 304

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+   Y ++I   +K G+  E L  L EM    +     TY  L+   GK    DE+ 
Sbjct: 305 AAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVK 364

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+    D  SP+ +TY +LI     A  +   E     M  K +     T  ++++ +
Sbjct: 365 DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGF 424

Query: 290 MNFGMLDKMEKFYKRLLNSR 309
           +  G+LDK  + YKR++  R
Sbjct: 425 VKRGLLDKATE-YKRMMKER 443



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA+R + EM G    P +  YN++I  ++K G   +A     +M++  + P S TYD L+
Sbjct: 817 EAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             + + +   E+  CLK MK  G SP   T + + + F+  G+
Sbjct: 877 SGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGM 919



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 6/199 (3%)

Query: 111 RFLKNSSRSRQIPQVFD----MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R L+  S+SR++  + D    M      + I  +N+  ++ +LC  G+  +A    +EM 
Sbjct: 664 RVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT--LLQVLCYHGMTRKATVVLEEML 721

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G  + P    +N++I G+ K    + A     +M   N+SP   T++ L+          
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E    L  M+  G  P+++TY++L                Y  M+ K    + ST  A++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 287 DAYMNFGMLDKMEKFYKRL 305
             +   GM+ + ++ +K +
Sbjct: 842 SDFTKAGMMTQAKELFKDM 860



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 124/299 (41%), Gaps = 40/299 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++EA +   EME  ++ P++  ++S+I+G+ K G  ++A  +   MKE  
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI  + K++  D        M  +G   +    + L+      G ++   
Sbjct: 445 INPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAM 504

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K      + L       ++D     G +    KF + L++ R  L + +V  +    
Sbjct: 505 ALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD-RNMLPDAVVYNV---- 559

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
                                    + CL      C+L   +   S + EM +  ++ + 
Sbjct: 560 ------------------------FINCL------CMLGKFKEAKSFLTEMRNMGLKPDQ 589

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           +T N +++++ +  +      LL E+    +KP+++T    Y+    G  GTGA+E  K
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLIT----YNTLVAGLFGTGAVEKAK 644



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G   +A++   EM+  ++KP+L  YN+++ G    G   +A   LNEM     SP S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T+  ++QA  + +  D I    + M   G   D   YN L+Q     G+ ++     + 
Sbjct: 660 LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEE 719

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           ML   +   + T  A++  +     LD     Y ++L
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQML 756



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 141/377 (37%), Gaps = 27/377 (7%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  ++N+F    ++  L + G +EEA+  F++  G  L      Y ++I G  K G    
Sbjct: 478 EGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPT 537

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  F  E+ + N+ P +  Y+  I        + E    L  M+  G  PD  TYN +I 
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIV 597

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G   +       M    +     T   ++      G ++K +     ++++    
Sbjct: 598 SHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVV 371
                R++ +   ++     + D+ + + +     ++     LL   C     R    V+
Sbjct: 658 SSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDA 427
            EM  + +  +  T N ++L + K     +     +++  +++ P+I T    +G L   
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR---------YCEEVYSS 478
            RIG  GT  +EM K          +  + L   +   GH  +         YCE V   
Sbjct: 778 GRIGEAGTVLIEMEKS--------GLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKG 829

Query: 479 LEPYSREKKRWTYQNLI 495
             P     K  TY  LI
Sbjct: 830 FVP-----KVSTYNALI 841



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  FN+  ++G L   G + EA     EME   L+P+   Y+ +  G+ K     EA+  
Sbjct: 764 IATFNT--LLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRL 821

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EM      P+  TY+ LI  + K  M  +     K M+  G  P   TY++L+  ++ 
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 ++   K M  K       T+  I  A+   GM  + ++  K L
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 47/324 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G ++ A  A  +  G      +  +N++I GY ++G    AL   + M    
Sbjct: 141 LLAGLCRNGQVDAAA-ALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQG 199

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L      Y+ L+  + +    D     L MMK  G  P+  TY   I  +     ++   
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAF 259

Query: 265 GTYKSMLTKRMHLRSSTMVAIL----------DAYMNFGMLDKMEKF-----YKRLLNS- 308
             Y+ M+   + L   T+ A++          +AY  F  +DK+        Y  L++S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319

Query: 309 -RTPLKEDLVRKLAEVYIKNYMF------SRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
            +    ++L+  L E+  +  +       + +D LG     + G+T+ V      + +  
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG-----KQGKTDEVKDTLRFALSDN 374

Query: 362 LSHRGI------------------DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           LS  G+                  + V+ EME   +  NV T + ++  ++K        
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
                +  R + P++VT G L D 
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDG 458


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 86/193 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +EE +    +M+   LKP +  Y +II GY K    ++A  +L E+ +  L P +
Sbjct: 538 CNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNA 597

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y+ LI  YG+     +    L  MK +G  P  +TYN L+     AGL++ ++  +  
Sbjct: 598 VIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQ 657

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
            + K + L       I+  +   G +D+   ++K + +   P  +     L   Y K+  
Sbjct: 658 CIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGN 717

Query: 330 FSRLDDLGDDLAS 342
                 L D++ S
Sbjct: 718 KEEASKLFDEMVS 730



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C  GL+EE    F +     ++  +  Y  II G+ KIGK +EA+++  EM    + P 
Sbjct: 642 MCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPN 701

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  L+ AY K    +E       M   G  PD ++YN LI  F     L +M  +  
Sbjct: 702 KMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPA 761

Query: 269 SMLTKRMHLRSSTMVAILDA 288
            M ++ +     +  A +D 
Sbjct: 762 EMSSQVLKQDGCSYNAFVDG 781



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G ++EAV  F+EM    + P+   Y +++  YSK G   EA    +EM  + 
Sbjct: 673 IIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEI-----DMCLKMMKLDGCS 241
           + P S +Y+ LI  + +    D++     +M  +++K DGCS
Sbjct: 733 IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCS 774



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 7/281 (2%)

Query: 26  KNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLN 85
           +  L   R   ++ L   P+S   +++A   D H T    LLV +     A  +L    +
Sbjct: 105 RASLPSARRLVSRLLRFNPLS---VAAAAIADSHCTATADLLVRACLNSPAPGSL----S 157

Query: 86  KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145
           +     L++       +      ++  L    +     +VF   ++ +    +      +
Sbjct: 158 RAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAM 217

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  LC  G ++ A     E+    ++P++  YN ++    K G+  EA      M E  +
Sbjct: 218 IKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRV 277

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   T+  LI    + + + E+   L+ M+  G +P+ + YN +I      G       
Sbjct: 278 RPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALK 337

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            +  M++K +     T   I  A    G ++  EK    +L
Sbjct: 338 LFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEML 378



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 141/352 (40%), Gaps = 19/352 (5%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R +Q  +V  + + ++   I  NE    ++IG  C +G   EA++ F EM    +K ++
Sbjct: 292 ARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTV 351

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN I     K G+   A   L+EM    +      ++ ++  +   +    +D+ L++
Sbjct: 352 VTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWH--LRGTGRLDLVLRL 409

Query: 235 MK---LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           ++        P+       IQE   +G  +     +  +L K + +  +T  A++     
Sbjct: 410 IREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQ 469

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
              + +  K  K ++NS   L       + +   K         L DD+  R  + +L  
Sbjct: 470 GNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFT 529

Query: 352 CLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
               L   C L     I  ++ +M+S  ++ ++ T   I+  Y K KD       L+EL 
Sbjct: 530 FNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELM 589

Query: 411 TRHVKPDIVTIGILYDARRIGF-------DGTGALEMWKRIGFLFKTVEINT 455
              ++P+ V    +Y+A   G+       D  G L+  K  G     V  N+
Sbjct: 590 KNGLRPNAV----IYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNS 637



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 36/219 (16%)

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           N  +  +I  + D  K+ E  + +      II   C+   M +A     E+    L+P+ 
Sbjct: 539 NLGKVEEILHLLDQMKS-EGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNA 597

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL------------------- 215
            IYN++I GY + G  ++A+  L+ MK   + P   TY+ L                   
Sbjct: 598 VIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQ 657

Query: 216 ----------------IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
                           IQ + K    DE  M  K M   G  P+ +TY  L+  ++ +G 
Sbjct: 658 CIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGN 717

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            +     +  M++  +   S +   ++  +     LDKM
Sbjct: 718 KEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKM 756



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 5/275 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  EEA   + ++ G  L  ++   N++IHG  +     EA   L  M    +   
Sbjct: 432 LCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELD 491

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ +IQ   K    DE       M   G  PD  T+N+ +  +   G ++ +     
Sbjct: 492 RITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLD 551

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M ++ +     T   I+D Y     + K  ++   L+ +       +   L   Y +N 
Sbjct: 552 QMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNG 611

Query: 329 MFSRLDDLGDDLA-SRIGRTELVW--CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
             S    + D +  + I  T + +   +  + HA L+    + +V  +     +   V  
Sbjct: 612 NISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEE--VKAVFAQCIVKDIELGVIG 669

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             II+  + K+       +   E+ +R + P+ +T
Sbjct: 670 YTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMT 704


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+    R++ + + FD+++ + ++ +  +      ++  LC +G   EA   F+EM+   
Sbjct: 245 FIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG 304

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+   Y ++I   +K G+  E L  L EM    +     TY  L+   GK    DE+ 
Sbjct: 305 AAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVK 364

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+    D  SP+ +TY +LI     A  +   E     M  K +     T  ++++ +
Sbjct: 365 DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGF 424

Query: 290 MNFGMLDKMEKFYKRLLNSR 309
           +  G+LDK  + YKR++  R
Sbjct: 425 VKRGLLDKATE-YKRMMKER 443



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 124/299 (41%), Gaps = 40/299 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++EA +   EME  ++ P++  ++S+I+G+ K G  ++A  +   MKE  
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI  + K++  D        M  +G   +    + L+      G ++   
Sbjct: 445 INPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAM 504

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K      + L       ++D     G +    KF + L++ R  L + +V  +    
Sbjct: 505 ALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD-RNMLPDAVVYNV---- 559

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
                                    + CL      C+L   +   S + EM +  ++ + 
Sbjct: 560 ------------------------FINCL------CMLGKFKEAKSFLTEMRNMGLKPDQ 589

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           +T N +++++ +  +      LL E+    +KP+++T    Y+    G  GTGA+E  K
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLIT----YNTLVAGLFGTGAVEKAK 644



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 6/199 (3%)

Query: 111 RFLKNSSRSRQIPQVFD----MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R L+  S+SR++  + D    M      + I  +N+  ++ +LC  G+  +A    +EM 
Sbjct: 664 RVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT--LLQVLCYHGMTRKATVVLEEML 721

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G  + P    +N++I G+ K    + A     +M   N+SP   T++ L+          
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E    L  M+  G  P+++TY++L                Y  M+ K    + ST  A++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 287 DAYMNFGMLDKMEKFYKRL 305
             +   GM+ + ++ +K +
Sbjct: 842 SDFTKAGMMTQAKELFKDM 860



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G   +A++   EM+  ++KP+L  YN+++ G    G   +A   LNEM     SP S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T+  ++QA  + +  D I    + M   G   D   YN L+Q     G+ ++     + 
Sbjct: 660 LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEE 719

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           ML   +   + T  A++  +     LD     Y ++L
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQML 756



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 141/377 (37%), Gaps = 27/377 (7%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  ++N+F    ++  L + G +EEA+  F++  G  L      Y ++I G  K G    
Sbjct: 478 EGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPT 537

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  F  E+ + N+ P +  Y+  I        + E    L  M+  G  PD  TYN +I 
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIV 597

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G   +       M    +     T   ++      G ++K +     ++++    
Sbjct: 598 SHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVV 371
                R++ +   ++     + D+ + + +     ++     LL   C     R    V+
Sbjct: 658 SSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDA 427
            EM  + +  +  T N ++L + K     +     +++  +++ P+I T    +G L   
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR---------YCEEVYSS 478
            RIG  GT  +EM K          +  + L   +   GH  +         YCE V   
Sbjct: 778 GRIGEAGTVLIEMEKS--------GLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKG 829

Query: 479 LEPYSREKKRWTYQNLI 495
             P     K  TY  LI
Sbjct: 830 FVP-----KVSTYNALI 841



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           +NI  + I  FN+  ++G L   G + EA     EME   L+P+   Y+ +  G+ K   
Sbjct: 758 QNISPN-IATFNT--LLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA+    EM      P+  TY+ LI  + K  M  +     K M+  G  P   TY++
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDI 874

Query: 250 LIQ 252
           L+ 
Sbjct: 875 LVS 877



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 51/352 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G ++ A  A  +  G      +  +N++I GY ++G    AL   + M    
Sbjct: 141 LLAGLCRNGQVDAAA-ALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQG 199

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L      Y+ L+  + +    D     L MMK  G  P+  TY   I  +     ++   
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAF 259

Query: 265 GTYKSMLTKRMHLRSSTMVAIL----------DAYMNFGMLDKMEKF-----YKRLLNS- 308
             Y+ M+   + L   T+ A++          +AY  F  +DK+        Y  L++S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319

Query: 309 -RTPLKEDLVRKLAEVYIKNYMF------SRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
            +    ++L+  L E+  +  +       + +D LG     + G+T+ V      + +  
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG-----KQGKTDEVKDTLRFALSDN 374

Query: 362 LSHRGI------------------DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           LS  G+                  + V+ EME   +  NV T + ++  ++K        
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGT-GALEMWKRIGFLFKTVEIN 454
                +  R + P++VT G L D     F G   ALE++  +  L + V++N
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDG-FFKFQGQDAALEVYHDM--LCEGVKVN 483


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 8/279 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++EA    +EM G    P+L  YN++I G  K  K  +A   L  +      P 
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  ++    K    D+    ++ M   GC+P  ITY  L++     G +      +K
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 244

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M++K     +   V++++ Y       + +K    +    TP   D+   L + Y K  
Sbjct: 245 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--TPYI-DVYNALMDGYCKEG 301

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV---VREMESAKVRWNVTT 385
               + ++ +D+A R G    +    ++    L  H  +D     +  M SA    +V +
Sbjct: 302 RLDEIPNVFEDMACR-GCVPNIKTYNIVMDG-LCKHGKVDEAFPFLESMHSAGCVPDVVS 359

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            NII+    K    K  R +L ++    + PD VT   L
Sbjct: 360 YNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 398



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 100 DWTKDH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEE 157
           D T D   + +++     SSR+++  +V D  +      I+ +N+  ++   C+EG ++E
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--TPYIDVYNA--LMDGYCKEGRLDE 305

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
               F++M      P+++ YN ++ G  K GK +EA  FL  M      P   +Y+ +I 
Sbjct: 306 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIID 365

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-------CAGLLKRM 263
              K     E    L  M   G  PD +TYN L+ +F          G+LK M
Sbjct: 366 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 418



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           D + A++       R  +IP VF DM        I  +N   ++  LC+ G ++EA    
Sbjct: 288 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI--VMDGLCKHGKVDEAFPFL 345

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           + M      P +  YN II G  K  K  EA   L++M +  + P + TY+ L+  + K 
Sbjct: 346 ESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKE 405

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           + +D+    LK M   G  PD++TYN LI   +
Sbjct: 406 ERFDDAVGILKNMIKAGVDPDNVTYNTLISGLS 438



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N  K   + F    +I  LC+    ++A     EM    + P    +NSI+ G  K GKF
Sbjct: 2   NERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKF 61

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             A   L  M E N  P   TY+ LI    K +  D     +      G  PD +TY++L
Sbjct: 62  ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSIL 121

Query: 251 IQEFACAGLLKR 262
                  GL KR
Sbjct: 122 AD-----GLCKR 128



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-N 204
           I  LC+EG ++EA     EM+    + S   Y ++I G  K  + + A     EM  +  
Sbjct: 505 IDRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVAVKG 561

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L   S T++ LI A+ K K  DE    L++M   GCSP  ITYN++I
Sbjct: 562 LCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVI 608



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 39/267 (14%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA +   +M    + P    YN+++  + K  +F++A+  L  M +  + P + TY+ L
Sbjct: 374 KEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTL 433

Query: 216 IQAYGKY-KMYDEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           I    +  ++ D  ++  +M++ +GC      TYN +I      G LK+       M   
Sbjct: 434 ISGLSQTNRLGDAYELMHEMLR-NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 492

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +   + T    +D     G LD+       LL+    L++++      V I      +L
Sbjct: 493 GVEANTVTYNIFIDRLCKEGRLDEASS----LLSEMDTLRDEV--SYTTVIIGLCKAEQL 546

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           D      AS++ R E+V     +   C+ SH                    T N+++ A+
Sbjct: 547 DR-----ASKLAR-EMVA----VKGLCITSH--------------------TFNLLIDAF 576

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
            K K       LL  +  R   P ++T
Sbjct: 577 TKTKRLDEALTLLELMVQRGCSPSVIT 603


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 11/268 (4%)

Query: 118 RSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS ++ +  ++ +++E+   R  + +   +I   CE+GL+  A++    M    L+P++ 
Sbjct: 250 RSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVV 309

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +N++IHG+ +  K  EA     EMK +N++P + TY+ LI  Y +   ++      + M
Sbjct: 310 TFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDM 369

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G   D +TYN LI         ++     K +  + +   SST  A++         
Sbjct: 370 VCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNA 429

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           D+  + YK ++ S     E     L   + +N  F    D    +   + R  +    R 
Sbjct: 430 DRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDF----DGASQVLREMVRRSIPLDSRT 485

Query: 356 LSHAC-LLSHRGIDSVVR----EMESAK 378
           +   C  L H+G D +V+    EME  K
Sbjct: 486 VHQVCNGLKHQGKDQLVKKLLQEMEGKK 513



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++   C  G +++ +   Q+ME    + +   YN++I G+ + G  + AL   
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M +  L P   T++ LI  + +     E       MK    +P+ +TYN LI  ++  
Sbjct: 297 NMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356

Query: 258 G 258
           G
Sbjct: 357 G 357



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L  +G ++ A+R ++EM    + P+    N ++ GY + GK ++ +  L +M+ +     
Sbjct: 213 LLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRAT 272

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y+ LI  + +  +         MM   G  P+ +T+N LI  F  A  L+     + 
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            M    +   + T   +++ Y   G  +   +FY+ ++
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMV 370



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 47/103 (45%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M+ +   P++E  N+ +      G+ + AL F  EM+   +SP   T + ++ 
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMS 246

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            Y +    D+    L+ M+  G     ++YN LI      GLL
Sbjct: 247 GYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLL 289


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 13/297 (4%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  FN+  +I  LC EG + EA+     +     +P++  +  I++G  KIGK + A
Sbjct: 171 KPSIITFNT--LINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           ++++ +M E++  P+  +Y  +I +  K ++ +E       M+  G SP  +TYN LI  
Sbjct: 229 IVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYG 288

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
              +G  K+    +K ML   M     T   ++DA    G++ +    + +++  +  ++
Sbjct: 289 MCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMI--QIAME 346

Query: 314 EDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV----WCLRLLSHACLLSHRGI 367
            D+V    L     K+ ++     L +++ SR  R ++V    W + +     ++S    
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIW-VDVFCKKGMVSEA-- 403

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            S++  M    +R NV T N ++  Y         R +   +  +   PD+++  IL
Sbjct: 404 QSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNIL 460



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 19/284 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG++ EA+  F +M   A++P +  Y+S+IHG  K   + E+   LNEM   N
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+   +  + K  M  E    + +M   G  P+ +TYN L+  +     +    
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKL 320
             +  M+ K       +   ++  Y     +D+ ++ +  +    L   +     L+  L
Sbjct: 440 KVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGL 499

Query: 321 AEV---YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
            +    Y    +F ++   G          +L+    LLS  C   H  +D  +   E+ 
Sbjct: 500 CQAGRPYAAKELFKKMGSHG-------CPPDLITYSTLLSGFC--KHGHLDEALALFEAL 550

Query: 378 K---VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           K   ++ N     I+L    K    +  + L S L    ++PD+
Sbjct: 551 KKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 30/229 (13%)

Query: 103 KDHFWAVIRFLKNSSRSRQI-PQV--FDMWKNI--EKSRINEFNSQKIIGMLCEEGL--- 154
           K   W     L N   SR I P V  F +W ++  +K  ++E  +Q II ++ E GL   
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSE--AQSIINLMIERGLRPN 418

Query: 155 ----------------MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
                           M+EA + F  M      P +  YN +I GY K  + +EA    +
Sbjct: 419 VVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFD 478

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EM    L+P S T+  LI    +           K M   GC PD ITY+ L+  F   G
Sbjct: 479 EMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHG 538

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVA--ILDAYMNFGMLDKMEKFYKRL 305
            L      ++++  K+  L+ + ++   +L      G L+  ++ +  L
Sbjct: 539 HLDEALALFEAL--KKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSL 585



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 36/284 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC   L+        ++     KPS+  +N++I+G    G+  EA+  L+ +    
Sbjct: 145 LINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   T+  ++    K  K    I    KM++LD C P+ ++Y+++I       L+   
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELD-CEPEVVSYSIIIDSLCKNRLVNEA 263

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              +  M +  +     T  +++    N G   +    +K +L     +K D+V      
Sbjct: 264 VDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN--MKPDVVT----- 316

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
                 FS L D                   L     +L      SV  +M    +  ++
Sbjct: 317 ------FSILVD------------------ALCKEGVVLEAL---SVFGKMIQIAMEPDI 349

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            T + ++    K   +K    LL+E+ +R+++PD+VT  I  D 
Sbjct: 350 VTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDV 393


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 45/336 (13%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM++   KS +  FN   +I +LC+EG +++A      ME F +KP++  YN+++ G+S 
Sbjct: 215 DMYRMEIKSNVYTFNI--MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSL 272

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+   A L ++EMK     P   TY+ ++          E+   L+ MK  G  PD ++
Sbjct: 273 RGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEV---LREMKEIGLVPDSVS 329

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKR-------------------------------- 274
           YN+LI+  +  G L+ M   Y+  + K+                                
Sbjct: 330 YNILIRGCSNNGDLE-MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREI 388

Query: 275 ----MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
               + L S T   +++ Y   G   K    +  ++       +     L  V  +    
Sbjct: 389 REKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKT 448

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANI 388
              D+L + +  +  + +LV    L+   C + +  R   S+++EM+   +  +  T N 
Sbjct: 449 READELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAF-SLLKEMDMMSINPDDVTYNC 507

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           ++        F+  R L+ E+  R +KPD ++   L
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTL 543



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            +F    +I +LC +    EA   F+++ G  +KP L + N+++ G+  IG  + A   L
Sbjct: 431 TQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLL 490

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM  M+++P   TY+ L++       ++E    +  MK  G  PDHI+YN LI  ++  
Sbjct: 491 KEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 550

Query: 258 G 258
           G
Sbjct: 551 G 551



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 124 QVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F + K ++   IN  +     ++  LC EG  EEA     EM+   +KP    YN++I
Sbjct: 485 RAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLI 544

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GYSK G    A +  +EM  +  +P   TY+ L++   K +  +  +  L+ MK +G  
Sbjct: 545 SGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIV 604

Query: 242 PDHITYNLLIQEFA 255
           P+  ++  +I+  +
Sbjct: 605 PNDSSFCSVIEAMS 618



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 8/270 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+  +++EA+  F  M+     P  E  N I+   S++ +   A +F  +M  M +    
Sbjct: 166 CQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T++ +I    K     +    L +M++ G  P  +TYN L+Q F+  G ++        
Sbjct: 226 YTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISE 285

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNY 328
           M +K       T   IL    N G   ++ +  K + L   +     L+R  +       
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEM 345

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTA 386
            F+  D++      + G     +    L H   + ++    + ++RE+    +  +  T 
Sbjct: 346 AFAYRDEM-----VKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 400

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           NI++  Y +  D K    L  E+ T  ++P
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTDGIQP 430


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 172/440 (39%), Gaps = 61/440 (13%)

Query: 77  LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-- 134
           LN L++    +++C +     D +   D++   I  +K   +  ++    D WK IEK  
Sbjct: 144 LNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCI-MVKGLCKEGKVE---DGWKLIEKRW 199

Query: 135 -----SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
                  I  +N+  +I   C++G  E A   F+E++     P+++ Y +II+G+ K GK
Sbjct: 200 GRGCMPNIVFYNT--LIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGK 257

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           F      L EM E  L      Y+ +I A  K+    E    +  M   GC PD  TYN+
Sbjct: 258 FEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNI 317

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI      G + + E                    +L+  +  G+L     +        
Sbjct: 318 LITGSCSCGEVHKAE-------------------QLLEQAIKRGLLPNKVSY-------- 350

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           TPL  +        Y K   + R  DL   ++ R  + +LV    L+    +     +  
Sbjct: 351 TPLIHN--------YCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVAL 402

Query: 370 VVR-EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
            VR +M    V  +    N+++    K       +VLL+E+  ++V PD      L D  
Sbjct: 403 TVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVD-- 460

Query: 429 RIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV------YGKGHFLRYCEEVYSSLEPY 482
             GF   G  E  K++  L  T+E   DP V+        Y K   ++     +  +   
Sbjct: 461 --GFIRHGDFEEAKKLFEL--TIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQG 516

Query: 483 SREKKRWTYQNLIDLVIKHN 502
                 +TY  +ID  IK N
Sbjct: 517 LHSPDEFTYSTIIDGYIKMN 536



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F +  ++      G  EEA + F+      + P +  YN++I GY K G   +ALL  
Sbjct: 451 DAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCF 510

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL---DGCSPDHITYNLLIQEF 254
             M +   SP   TY  +I  Y K    +++   L+M  L     C P+ +TY LLI  F
Sbjct: 511 KRMIQGLHSPDEFTYSTIIDGYIKM---NDLHGALRMFGLMVKGACKPNVVTYTLLINGF 567

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             +G + R E T+K ML+ R+     T   ++  +     L K   F++++L
Sbjct: 568 CLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQML 619



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 114/292 (39%), Gaps = 3/292 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+ +   +I   C++G    A+    +M     KP L  Y ++IHG    G+ + AL   
Sbjct: 346 NKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVR 405

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N+M E  + P ++ Y+ L+    K        + L  M     +PD      L+  F   
Sbjct: 406 NKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRH 465

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +  +  ++  + K +        A++  Y  FGM+      +KR++       E   
Sbjct: 466 GDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTY 525

Query: 318 RKLAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREME 375
             + + YIK N +   L   G  +        + + L L++  CL       +   ++M 
Sbjct: 526 STIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTL-LINGFCLSGDINRAEKTFKQML 584

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S +++ NV T  I++  + K  +         ++      P+ VT   L + 
Sbjct: 585 SLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNG 636


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 120/283 (42%), Gaps = 4/283 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++   C+ G +++A +    M    ++P++  Y+++I G  K  KF EA   L E
Sbjct: 252 FNS--LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 309

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK   ++P + TY  LI    K    +E +  L+ M   GC+PD + Y+ +I  F  +G 
Sbjct: 310 MKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-R 318
           L   + T + M  +R      T   ++D     G + + +   +++  S   L + +   
Sbjct: 370 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYS 429

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESA 377
            +     K+ M      L D +       ++V    ++   C        + +++ M+ A
Sbjct: 430 TVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 489

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               NV T   ++    K +       ++ E+      P++VT
Sbjct: 490 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 532



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  ++ EA +    M      P +  Y +II G  K G+  EA   L  MK   
Sbjct: 431 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI    K +  DE +  ++ M+  GC P+ +TYN ++     +G +K  +
Sbjct: 491 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 550

Query: 265 GTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              + M   R      ++T   I++A M+  ++ + E+  +++ ++ +  +E
Sbjct: 551 QLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSSQQE 602



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 114/295 (38%), Gaps = 39/295 (13%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS------------------- 209
           + +P +  YN +I G+   G  + AL  L EMK    +P +                   
Sbjct: 107 SCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA 166

Query: 210 -------------DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
                         TY  LI A+ + K  +E    L+ M+  GC P+ +TYN+L+     
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
             ++   +   K M+         T  +++D +   G +D   K    ++     ++ ++
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG--MRPNV 284

Query: 317 V--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVR 372
           V    L +   K+  F    ++ +++ +R G T   +    L H    + +    + ++R
Sbjct: 285 VTYSALIDGLCKSQKFLEAKEVLEEMKTR-GVTPDAFTYSALIHGLCKADKIEEAEQMLR 343

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            M  +    +V   + I+ A+ K       +  L E+  +   PD+VT   + D 
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 31/298 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    II  +   G ++ A+   + M      P++  Y ++I  +++  K  EA+  L
Sbjct: 146 DAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLL 202

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM+E    P   TY+ L+ A  K  M       +K M   G +P+ +T+N L+  F   
Sbjct: 203 EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 262

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +         M+ K M     T  A++D       L K +KF    L ++  L+E   
Sbjct: 263 GNVDDARKLLGIMVAKGMRPNVVTYSALIDG------LCKSQKF----LEAKEVLEEMKT 312

Query: 318 RKLAEVYIKNYMFSRL-------DDL--GDDLASRI---GRTELVWCLRLLSHACLLSHR 365
           R    V    + +S L       D +   + +  R+   G T  V     + HA   S +
Sbjct: 313 RG---VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369

Query: 366 GIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL-PTRHVKPDIVT 420
            +++   ++EM   +   +V T N ++    K+      +V+L ++  +  V PD+VT
Sbjct: 370 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVT 427



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 131/334 (39%), Gaps = 21/334 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+  ++  A    ++M      P++  +NS++ G+ K G  ++A   L  M    
Sbjct: 220 LVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 279

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI    K + + E    L+ MK  G +PD  TY+ LI     A  ++  E
Sbjct: 280 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAE 339

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR------ 318
              + M             +I+ A+   G L + +K  + +   R     D+V       
Sbjct: 340 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTVID 397

Query: 319 ---KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
              KL ++     +  ++ + GD L   +  + ++  L   S   + + + +D + +   
Sbjct: 398 GLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL-CKSDMLVEAQKLLDRMCK--- 453

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRIG 431
            A    +V T   I+    K    +    LL  +      P++VT    I  L  AR++ 
Sbjct: 454 -AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVD 512

Query: 432 FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK 465
            +    +E  +  G     V  NT    L V G+
Sbjct: 513 -EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 545



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I  LC+     EA    +EM+   + P    Y+++IHG  K  K  EA  
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            L  M     +P    Y  +I A+ K     E    L+ M+    SPD +TYN +I
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 396



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/275 (18%), Positives = 106/275 (38%), Gaps = 2/275 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEA++  +EM      P+L  YN ++    K+     A   + +M E   +P   T++ 
Sbjct: 195 LEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 254

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+  + K    D+    L +M   G  P+ +TY+ LI     +      +   + M T+ 
Sbjct: 255 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRG 314

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +   + T  A++        +++ E+  +R+  S       +   +   + K+       
Sbjct: 315 VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQ 374

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE--MESAKVRWNVTTANIILLA 392
               ++  +    ++V    ++   C L       V+ E   ES  V  +V T + ++  
Sbjct: 375 KTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVING 434

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             K       + LL  +      PD+VT   + D 
Sbjct: 435 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDG 469


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 14/202 (6%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           +RF +   R+R +P V              +N+  +IG  C+   ++EA +  + M    
Sbjct: 223 LRFFEEMERNRCLPNVV------------TYNT--VIGAYCKLKRIDEAFKLLRSMGLEG 268

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L+P+L  YN +I+G  ++G+  E    L EM     +P   TY+ L+  Y K   + +  
Sbjct: 269 LEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQAL 328

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +    M  +G  PD +TY  LI     AG L R    +  M  + +     T  ++++ +
Sbjct: 329 VLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGF 388

Query: 290 MNFGMLDKMEKFYKRLLNSRTP 311
              G +D+  + +  ++ S  P
Sbjct: 389 SQKGFMDEAYRIWDEMIRSGFP 410



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 120/288 (41%), Gaps = 7/288 (2%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   +I   C  G +E  +R F+EME     P++  YN++I  Y K+ + +EA   
Sbjct: 201 LNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKL 260

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M    L P   TY+ +I    +    +E    L  M   G +PD +TYN L+  +  
Sbjct: 261 LRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCK 320

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPL 312
            G   +    +  ML   +     T  ++++     G L++  +F+ ++    L      
Sbjct: 321 VGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVT 380

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
              L+   ++    +  +   D++   + S    T + +   L  H           ++R
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEM---IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            ME   +  +V + + I+  + + ++      + +E+  + V PD +T
Sbjct: 438 GMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAIT 485



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I    ++G M+EA R + EM      P++  YN++++G+   G+  EA+ 
Sbjct: 375 RPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIG 434

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQ 252
            L  M+   LSP   +Y  +I  + +Y+   E+D   +M   M   G SPD ITY+ LIQ
Sbjct: 435 LLRGMEGKGLSPDVVSYSTIIAGFCRYQ---ELDRAFQMNAEMVEKGVSPDAITYSSLIQ 491

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                  L      ++ ML K +     T  ++++ Y   G L++
Sbjct: 492 GLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNE 536



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 17/207 (8%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R +++ + F M   + +  +  +      +I  LCE+  + EA   FQEM   +L P   
Sbjct: 460 RYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEF 519

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y S+I+GY K G  NEAL   +EM +    P + TY+ LI    K     E    L  +
Sbjct: 520 TYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579

Query: 236 KLDGCSPDHITYNLLIQE---------------FACAGLLKRMEGTYKSMLTKRMHLRSS 280
             D   P+ ITY+ LI+                F   GL+   +  ++SM+ +      +
Sbjct: 580 FYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEA 639

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLN 307
               I+  +   G + K  K YK +++
Sbjct: 640 VYNVIIHGHCRDGNVHKAHKLYKEMVD 666



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 7/267 (2%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A + ++EM    +  ++  YN +I G+   G     L F  EM+     P   TY+ +I 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY K K  DE    L+ M L+G  P+ +TYN++I      G ++   G    M  K    
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              T   +++ Y   G   +    +  +L +  P        L     K    +R  +  
Sbjct: 307 DGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF 366

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVR---EMESAKVRWNVTTANIILLAY 393
           D +  R  R   V    L++     S +G +D   R   EM  +     + T N +L  +
Sbjct: 367 DQMHVRGLRPNGVTYTSLING---FSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGH 423

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
                 +    LL  +  + + PD+V+
Sbjct: 424 CVSGRMEEAIGLLRGMEGKGLSPDVVS 450



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G MEEA+   + MEG  L P +  Y++II G+ +  + + A     EM E  +SP +
Sbjct: 424 CVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA 483

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LIQ   + +  +E     + M      PD  TY  LI  +   G L      +  
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDE 543

Query: 270 MLTK 273
           M+ K
Sbjct: 544 MIKK 547



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+ G +  A+  F +M    L+P+   Y S+I+G+S+ G  +EA    +EM    
Sbjct: 349 LINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG 408

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L+  +      +E    L+ M+  G SPD ++Y+ +I  F     L R  
Sbjct: 409 FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAF 468

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                M+ K +   + T  +++        L++    ++ +LN
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN 511



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 17/221 (7%)

Query: 120 RQIPQVFDMWKN-IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R++ +  D+++  + KS + +EF    +I   C+EG + EA+    EM      P    Y
Sbjct: 497 RRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTY 556

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD---------------GLIQAYGKY 222
           N +I+G +K  +  EA   L ++      P   TYD                LI+ +   
Sbjct: 557 NVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMK 616

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
            + +E D   + M      P+   YN++I      G + +    YK M+       + T+
Sbjct: 617 GLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTI 676

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           +A++ A  + GM +++    + +L S      +L + L ++
Sbjct: 677 IALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQI 717


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 4/279 (1%)

Query: 117 SRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +S+Q      ++K ++    + N      ++     EGL E+A   F+EM+    +P +
Sbjct: 95  GKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 154

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+++  YS+ G    A    + M+ M   P   +Y+ L+ AYG+  ++ E +   + 
Sbjct: 155 YAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFES 214

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           +K  G +P   ++ LL+   A +G + R E     +    +   +  + A+L+AY   G 
Sbjct: 215 LKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGR 274

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCL 353
           LD ME+     +  R              Y +     R++     L  R    ++V W  
Sbjct: 275 LDDMERLLA-AMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTS 333

Query: 354 RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392
           R+ ++A    +R    +  EM  A    +  TA +++ A
Sbjct: 334 RMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAA 372



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 119/273 (43%), Gaps = 6/273 (2%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A++ F+EM+    K ++  Y ++++ +++ G   +A     EM++    P    Y+ L++
Sbjct: 103 AMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALME 162

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY +            +M+  GC PD  +YN+L+  +  AGL +  E  ++S+  + M  
Sbjct: 163 AYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAP 222

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              + + +L A+   G + + E+   +L  S        +  +   Y +     RLDD+ 
Sbjct: 223 TMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRA---GRLDDME 279

Query: 338 DDLAS---RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
             LA+   R  R    + + + ++        +++    +E   +  +V T    + AY 
Sbjct: 280 RLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYA 339

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + K+++    +  E+      PD  T  +L  A
Sbjct: 340 RKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAA 372



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 124/335 (37%), Gaps = 43/335 (12%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +  A     EM    + PS  +YN+ + G  K     +A+     MK       +
Sbjct: 25  CTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKRERCRTNT 84

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY  +I  YGK K         K M+  GC  +  TY  L+  FA  GL ++ E  ++ 
Sbjct: 85  ETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEE 144

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M             A+++AY   G      + +                      +  +M
Sbjct: 145 MQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFS---------------------LMQHM 183

Query: 330 FSRLDDLG-DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
               D    + L    GR  L              HR  ++V   ++   +   + +  +
Sbjct: 184 GCEPDRASYNILVDAYGRAGL--------------HREAEAVFESLKRQGMAPTMKSHML 229

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLF 448
           +L A+ +  +      ++++L    + PD + +  + +A    +   G L+  +R+    
Sbjct: 230 LLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNA----YGRAGRLDDMERLLAAM 285

Query: 449 K---TVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
           +   T ++ T  + +  YG+  +L   E  ++SLE
Sbjct: 286 ERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLE 320



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           C P   TY LL++ +  AG L R EG    M    +   ++   A LD  +     +K  
Sbjct: 10  CVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAV 69

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y+R+   R     +    +  VY K+        +  ++ S IG    +     L +A
Sbjct: 70  EVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQS-IGCKANICTYTALVNA 128

Query: 360 CLLSHRGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
              +  G+    + V  EM+ A    +V   N ++ AY +    +    + S +     +
Sbjct: 129 --FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCE 186

Query: 416 PDIVTIGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           PD  +  IL DA  R G   +     E  KR G       + +  L+LA + +   +  C
Sbjct: 187 PDRASYNILVDAYGRAGLHREAEAVFESLKRQGM---APTMKSHMLLLAAHARSGNVARC 243

Query: 473 EEVYSSL 479
           EEV + L
Sbjct: 244 EEVMAQL 250


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 112/280 (40%), Gaps = 7/280 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC++G++ EA+  F  M    ++P L  YNS+IHG    G++ EA   L  M    
Sbjct: 218 IMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKG 277

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ L+  + K  M       +  M   G  PD +TYN +I        +    
Sbjct: 278 IMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAV 337

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
             ++ M+ K       T  +++  +     ++K       ++NS   L  D+V    L  
Sbjct: 338 KVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSG--LNPDVVTWSTLIG 395

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS--HACLLSHRGIDSVVREMESAKVR 380
            + K        +L   +        L  C  +L     C      I S+ REME   + 
Sbjct: 396 GFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAI-SLFREMEKMNLE 454

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            NV   NI+L            + L S LP++ +K D+V 
Sbjct: 455 LNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVA 494



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
            EA+  F+EME   L+ ++ IYN ++ G    GK N+A    + +    +      Y  +
Sbjct: 439 SEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTM 498

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           I+   K  + D+ +  L  M+ +GC P+  TYN+ ++     GLL+R +
Sbjct: 499 IKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVR-----GLLQRYD 542



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 111/302 (36%), Gaps = 41/302 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +  A R    +E    + +   Y +II+G  K G  + A+L+L ++K  N
Sbjct: 147 LINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRN 206

Query: 205 LSPQSD-TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
                   Y  ++ +  K  M  E       M   G  PD + YN LI      G  K  
Sbjct: 207 CDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEA 266

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
                +M+ K                   G++  ++ F                  L + 
Sbjct: 267 TTLLGNMMRK-------------------GIMPNVQTF----------------NVLVDN 291

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWN 382
           + K+ M SR   +   +       ++V    ++S  CLLS  G    V E+   K    N
Sbjct: 292 FCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPN 351

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           + T + ++  + K K+      LL E+    + PD+VT   L      GF   G  E  K
Sbjct: 352 LVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIG----GFCKAGKPEAAK 407

Query: 443 RI 444
            +
Sbjct: 408 EL 409



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C+ G  E A   F  M      P+L+    I+ G  K    +EA+    EM++MN
Sbjct: 393 LIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMN 452

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           L      Y    DG+  ++GK     E+  CL      G   D + Y  +I+     GLL
Sbjct: 453 LELNVVIYNIVLDGMC-SFGKLNDAQELFSCLPS---KGIKIDVVAYTTMIKGLCKEGLL 508

Query: 261 KRME 264
              E
Sbjct: 509 DDAE 512


>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 6/250 (2%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEA   F EM+   + P+   YN ++  YS+  +       L EM++M L P   +Y  
Sbjct: 364 VEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTC 423

Query: 215 LIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           LI AYG+ K   ++  D  L+M K+ G  P   +Y  LI  ++  G  ++    +++M  
Sbjct: 424 LISAYGRQKKMSDMAADAFLRMKKV-GIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKR 482

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  A+LDA+   G    + K +K +L+ +          L + + K   +  
Sbjct: 483 EGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYME 542

Query: 333 LDDLGDDLASRIGRTELVWCLRLL--SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             D+  +   +IG    V    +L  ++A    H  +  +++EM S  ++ +  T + ++
Sbjct: 543 ARDVIFEFG-KIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMI 601

Query: 391 LAYLKMKDFK 400
            AY++++DFK
Sbjct: 602 YAYVRVRDFK 611



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 127 DMWKNIEKSRINEFNSQKI-----IGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSI 180
           D WK  ++   N      +     I ++ ++G   ++A   FQ M    +K SLE+  ++
Sbjct: 260 DAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGAL 319

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I  +   G  NEAL+  +EM++  +S  +  Y+ L+ AY K    +E +     MK  G 
Sbjct: 320 IKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGV 379

Query: 241 SPDHITYNLLIQEFA 255
            P   TYN+L+  ++
Sbjct: 380 MPTSATYNILMDAYS 394



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 2/157 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A  AF+ M+   +KPS+E Y +++  + + G     +     M    +     T+
Sbjct: 468 GWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTF 527

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + L+  + K   Y E  D+  +  K+ G  P  +TYN+L+  +A  G   R+    K M 
Sbjct: 528 NILLDGFAKQGHYMEARDVIFEFGKI-GFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMT 586

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +  +   S T   ++ AY+      +   ++K+++ S
Sbjct: 587 SLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKS 623



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 118 RSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R+     +  +WK      IE +R+  FN   ++    ++G   EA     E      +P
Sbjct: 501 RAGDTQTLMKIWKLMLSDKIEGTRVT-FNI--LLDGFAKQGHYMEARDVIFEFGKIGFQP 557

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++  YN +++ Y++ G+ +     L EM  +NL P S TY  +I AY + + +       
Sbjct: 558 TVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYH 617

Query: 233 KMMKLDGCSPDHITYNLL 250
           K M   G  PD  +Y  L
Sbjct: 618 KQMVKSGQVPDPQSYQKL 635


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 16/296 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N++    +I   C+ G ++EAV+ F EM     +KP   +YN++I GY   GK + ALL+
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            + M E  ++    TY+ L+ A        E    ++ M   G +PD  TYN+LI     
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 673

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +K+    +++M  + +     T  A++ A    G + + +K +   +  R  ++ DL
Sbjct: 674 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV--RRGIRPDL 731

Query: 317 VRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
           V  L    I ++  S   D     +G+    RI   ++ +   L+   CLL    +D   
Sbjct: 732 V--LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYN-TLMRGLCLLGR--VDEAR 786

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ EM    ++ ++ T N ++  Y    D K    + +E+  +   P ++T   L
Sbjct: 787 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 842



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            + + S S  I + F++   +EK RI  ++     ++  LC  G ++EA +   EM    
Sbjct: 737 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P L  YN++I GYS  G   +AL   NEM     +P   TY+ LIQ   K    D+ +
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             +K M  +G +PD  TY  LI+
Sbjct: 857 NMVKEMVENGITPDDSTYISLIE 879



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 122 IPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           + +  ++++N+ +   R        +I  L ++G ++E  + F E     ++P L +YN+
Sbjct: 677 VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 736

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+ +S  G  + A   + EM++  ++P   TY+ L++        DE    +  M   G
Sbjct: 737 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             PD +TYN LI  ++  G +K        M+ K  +    T  A++      G  D  E
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 300 KFYKRLL-NSRTP 311
              K ++ N  TP
Sbjct: 857 NMVKEMVENGITP 869



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A     EME   + P    YN+++ G   +G+ +EA   ++EM E  + P   TY
Sbjct: 745 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 804

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + LI  Y  K  + D + +  +MM   G +P  +TYN LIQ     G     E   K M+
Sbjct: 805 NTLISGYSMKGDVKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 863

Query: 272 TKRMHLRSSTMVAILDA 288
              +    ST +++++ 
Sbjct: 864 ENGITPDDSTYISLIEG 880



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 131/337 (38%), Gaps = 56/337 (16%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSP 207
           LC  G    A+   ++M     +P+   YN++I G+   G+   AL  + EM+E   ++P
Sbjct: 498 LCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 553

Query: 208 QSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL------ 260
              TY  +I  + K    DE + +  +M+      P+ + YN LI  +   G L      
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 261 -KRM-----------------------EGTYKSMLTKRMHLRS-----STMVAILDAYMN 291
             RM                        GT    L + M  +       T   +++ +  
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 673

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTEL 349
            G + K  + ++ +  SR  ++  +V   A +Y   K       D L D+   R  R +L
Sbjct: 674 EGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 731

Query: 350 VWCLRLLSHACLLSHRGIDSVVR------EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           V     L +A + SH    ++ R      EME  ++  +  T N ++     +      R
Sbjct: 732 V-----LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 786

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            L+ E+  R ++PD+VT   L     +  D   AL +
Sbjct: 787 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRI 823



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 44/267 (16%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M    L      +N ++      GK   AL  L +M      P + TY+ +I 
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 527

Query: 218 AY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            +  + ++   +D+  +M +  G +P+  TY  +I  +   G +      +  MLTK   
Sbjct: 528 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 587

Query: 277 LRSSTMV-AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
              + M  A++  Y + G LD    +  R           +V +   + +  Y       
Sbjct: 588 KPEAVMYNALIGGYCDQGKLDTALLYRDR-----------MVERGVAMTVATY------- 629

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAY 393
                              LL HA  +  RG ++  +V EM    +  +V T NI++  +
Sbjct: 630 ------------------NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 671

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
            K  + K    +   +  R V+  +VT
Sbjct: 672 CKEGNVKKALEIFENMSRRGVRATVVT 698


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+    R++ + + FD+++ + ++ +  +      ++  LC +G   EA   F+EM+   
Sbjct: 245 FIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG 304

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+   Y ++I   +K G+  E L  L EM    +     TY  L+   GK    DE+ 
Sbjct: 305 AAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVK 364

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+    D  SP+ +TY +LI     A  +   E     M  K +     T  ++++ +
Sbjct: 365 DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGF 424

Query: 290 MNFGMLDKMEKFYKRLLNSR 309
           +  G+LDK  + YKR++  R
Sbjct: 425 VKRGLLDKATE-YKRMMKER 443



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA+R + EM G    P +  YN++I  ++K G   +A     +M++  + P S TYD L+
Sbjct: 817 EAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             + + +   E+  CLK MK  G SP   T + + + F+  G+
Sbjct: 877 SGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGM 919



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 6/199 (3%)

Query: 111 RFLKNSSRSRQIPQVFD----MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R L+  S+SR++  + D    M      + I  +N+  ++ +LC  G+  +A    +EM 
Sbjct: 664 RVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT--LLQVLCYHGMTRKATVVLEEML 721

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G  + P    +N++I G+ K    + A     +M   N+SP   T++ L+          
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E    L  M+  G  P+++TY++L                Y  M+ K    + ST  A++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 287 DAYMNFGMLDKMEKFYKRL 305
             +   GM+ + ++ +K +
Sbjct: 842 SDFTKAGMMTQAKELFKDM 860



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 125/299 (41%), Gaps = 40/299 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++EA +   EME  ++ P++  ++S+I+G+ K G  ++A  +   MKE  
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI  + K++  D        M  +G   +    + L+      G ++   
Sbjct: 445 INPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAM 504

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K      + L       ++D     G +    KF + L++ R  L + +V     V+
Sbjct: 505 ALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD-RNMLPDAVVYN---VF 560

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
           I                          CL      C+L   +   S + EM +  ++ + 
Sbjct: 561 IN-------------------------CL------CMLGKFKEAKSFLTEMRNMGLKPDQ 589

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
           +T N +++++ +  +      LL E+    +KP+++T    Y+    G  GTGA+E  K
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLIT----YNTLVAGLFGTGAVEKAK 644



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G   +A++   EM+  ++KP+L  YN+++ G    G   +A   LNEM     SP S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T+  ++QA  + +  D I    + M   G   D   YN L+Q     G+ ++     + 
Sbjct: 660 LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEE 719

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           ML   +   + T  A++  +     LD     Y ++L
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQML 756



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 141/377 (37%), Gaps = 27/377 (7%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  ++N+F    ++  L + G +EEA+  F++  G  L      Y ++I G  K G    
Sbjct: 478 EGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPT 537

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  F  E+ + N+ P +  Y+  I        + E    L  M+  G  PD  TYN +I 
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIV 597

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G   +       M    +     T   ++      G ++K +     ++++    
Sbjct: 598 SHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVV 371
                R++ +   ++     + D+ + + +     ++     LL   C     R    V+
Sbjct: 658 SSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDA 427
            EM  + +  +  T N ++L + K     +     +++  +++ P+I T    +G L   
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR---------YCEEVYSS 478
            RIG  GT  +EM K          +  + L   +   GH  +         YCE V   
Sbjct: 778 GRIGEAGTVLIEMEKS--------GLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKG 829

Query: 479 LEPYSREKKRWTYQNLI 495
             P     K  TY  LI
Sbjct: 830 FVP-----KVSTYNALI 841



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           +NI  + I  FN+  ++G L   G + EA     EME   L+P+   Y+ +  G+ K   
Sbjct: 758 QNISPN-IATFNT--LLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA+    EM      P+  TY+ LI  + K  M  +     K M+  G  P   TY++
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDI 874

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L+  ++       ++   K M  K       T+  I  A+   GM  + ++  K L
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 73/288 (25%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMM 235
           YN+++ G+ + G+ + A   L+ MKE  + P   TY   I  Y + K  +E  D+   M+
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 236 K----LD------------------------------GCSPDHITYNLLIQEFACAGLLK 261
           +    LD                              G +P+H+TY  LI   A AG  K
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGK 326

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
            +      M+++ + +   T  A++D     G  D++               +D +R   
Sbjct: 327 ELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV---------------KDTLR--- 368

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKV 379
                   F+  D+L  +     G T  V     L  A   +H     + V+ EME   +
Sbjct: 369 --------FALSDNLSPN-----GVTYTV-----LIDALCKAHNVDEAEQVLLEMEEKSI 410

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             NV T + ++  ++K             +  R + P++VT G L D 
Sbjct: 411 SPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDG 458


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC+   M++A    ++M    + P+   YN++I+GYS  G++ EA+    EM+ 
Sbjct: 258 SSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 317

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            ++ P   T++ L+ +  KY    E       M + G +PD  +YN+++  +A  G L  
Sbjct: 318 QSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD 377

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           M   +  ML   +     T   ++ AY N GMLDK
Sbjct: 378 MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDK 412



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 125/324 (38%), Gaps = 50/324 (15%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G + +    F  M G  + P +  +N +I  Y+  G  ++A++  NEM++  + P   T
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLT 431

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I A  +    D+       M   G +PD   Y+ LIQ F   G L + +     ++
Sbjct: 432 YTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM 491

Query: 272 TKRMHLRSSTMVAI-----------------------------------LDAYMNFGMLD 296
              MHL      +I                                   +D Y   G ++
Sbjct: 492 NNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD----LGDDLASRIGRTELVWC 352
           K  + +  ++++     + +   L   Y K     R+D+      + L   I  + +++ 
Sbjct: 552 KALRVFDAMVSAGIEPNDVVYGTLVNGYCK---IGRIDEGLSLFREMLQKGIKPSTILY- 607

Query: 353 LRLLSHACLLSHRGIDSVVR--EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
             ++      + R + + V+  EM  + +  N  T +I+L    K + F     L  EL 
Sbjct: 608 -NIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELR 666

Query: 411 TRHVKPDIVT----IGILYDARRI 430
             +VK DI+T    I  ++  RR+
Sbjct: 667 AMNVKIDIITLNTMIAGMFQTRRV 690



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 70/163 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG + +A   F+EM    + P    Y+S++H   K    ++A  FL +M    
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY+ LI  Y     + E     K M+     PD +T+N+L+      G +K   
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEAR 344

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             + +M  K  +    +   +L+ Y   G L  M   +  +L 
Sbjct: 345 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 387



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +EAVR F+EM   ++ P +  +N ++    K GK  EA    + M     +P   +Y
Sbjct: 303 GQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + ++  Y  K  + D  D+   +M  DG +P   T+N+LI+ +A  G+L +    +  M 
Sbjct: 363 NIMLNGYATKGCLVDMTDL-FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 272 TKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLK 313
              +     T   ++ A    G M D MEKF + +     P K
Sbjct: 422 DHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM-EGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFL 197
           F+   ++  LC++G   +A    + M EG A+  P +  YN++I G+ K G  N+A    
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  + P   TY  ++ A  K +  D+ +  L+ M   G  P++ TYN LI  ++  
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 258 GLLKRMEGTYKSM 270
           G  K     +K M
Sbjct: 303 GQWKEAVRVFKEM 315



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 13/291 (4%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+ G + +A   F       L P+  +Y+ ++ GY  +GK  +AL   + M  
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             + P    Y  L+  Y K    DE     + M   G  P  I YN++I     AG    
Sbjct: 563 AGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVP 622

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            +  +  M    + +   T   +L         D+    +K L      +K D++     
Sbjct: 623 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKEL--RAMNVKIDIIT--LN 678

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE-------ME 375
             I     +R  +   DL + I R+ LV C  +++++ ++++   + +V E       M+
Sbjct: 679 TMIAGMFQTRRVEEAKDLFASISRSGLVPC--VVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +A    +    N ++   LK  +       LS++  R+   + +T  +L D
Sbjct: 737 NAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVD 787



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDG 214
           E A+  F ++    L+  + I N ++ G+ +  + +EAL + L+   E+   P   +Y  
Sbjct: 128 ELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 187

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           L+++        + D  L+MM   G  CSPD + YN +I  F   G + +    +K M+ 
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           + +     T  +++ A      +DK E F ++++N
Sbjct: 248 RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN 282



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA+  F+E+    +K  +   N++I G  +  +  EA      +    L P   TY  +
Sbjct: 656 DEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIM 715

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME----GTYKSML 271
           I    K  + +E +     M+  GC PD    N +++E     LLK+ E    G Y S +
Sbjct: 716 ITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRE-----LLKKNEIVRAGAYLSKI 770

Query: 272 TKR-MHLRSSTMVAILDAYMNFG 293
            +R   L   T + ++D + + G
Sbjct: 771 DERNFSLEHLTTMLLVDLFSSKG 793


>gi|414880641|tpg|DAA57772.1| TPA: hypothetical protein ZEAMMB73_835994 [Zea mays]
          Length = 728

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 156/366 (42%), Gaps = 45/366 (12%)

Query: 85  NKKVSCPLQILQHDGDW-----------TKDHFWAVI--RFLKNSSRSRQIPQVFDMWKN 131
           N  +S      ++DG W             DH  + I    +K S  S +    ++ +K 
Sbjct: 280 NAAISAVAYCRRYDGAWEIFELMEKNNVQPDHGTSAIMLNIMKKSKVSAK--DAWEFFKR 337

Query: 132 IEKSRIN-EFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           + +  +N  F+    +I + C +GL +EA+    EME   +  +  IY +++  Y K  +
Sbjct: 338 MNRKGVNWSFDVGAALINIFCSDGLKKEALIIQSEMEKRGIASNTSIYETLMKAYCKSNQ 397

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA     EMKE +L   + TY+ L+ AY +    + ++  L  M+  G  P   +YN 
Sbjct: 398 IEEAEGLFVEMKEKSLQATTTTYNILMDAYSRRLQTEVVESLLLEMQDLGIRPSARSYNC 457

Query: 250 LIQEFACAGLLKRMEGTYKSML--TKRMHLR--SSTMVAILDAYMNFGMLDKMEKFY--- 302
           LI  +   G  K+M G  ++     KR  ++  SS+  A+L AY   G+ +K    Y   
Sbjct: 458 LISAY---GRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAANGLHEKAHAIYMDM 514

Query: 303 -----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                K  L + T L + L R      +     + +D+       + G T +++ + +  
Sbjct: 515 KREGLKPTLETYTALLDTLRRAGDTEKLMETWKTMVDE-------KFGGTRVIFHMVI-- 565

Query: 358 HACLLSHR---GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             CL  H     +  V+ E     ++  V T NI++ AY +      L  LL E+    +
Sbjct: 566 -DCLAKHGLYLQVRDVIYEFGKMGLKPTVMTYNILMNAYGRGGQHYKLPQLLKEMTALEL 624

Query: 415 KPDIVT 420
           KPD +T
Sbjct: 625 KPDSIT 630



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 125/260 (48%), Gaps = 4/260 (1%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           + ++   C+   +EEA   F EM+  +L+ +   YN ++  YS+  +       L EM++
Sbjct: 386 ETLMKAYCKSNQIEEAEGLFVEMKEKSLQATTTTYNILMDAYSRRLQTEVVESLLLEMQD 445

Query: 203 MNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           + + P + +Y+ LI AYG+ K M  + +     MK DG  P   +YN L+  +A  GL +
Sbjct: 446 LGIRPSARSYNCLISAYGRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAANGLHE 505

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           +    Y  M  + +     T  A+LD     G  +K+ + +K +++ +      +   + 
Sbjct: 506 KAHAIYMDMKREGLKPTLETYTALLDTLRRAGDTEKLMETWKTMVDEKFGGTRVIFHMVI 565

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKV 379
           +   K+ ++ ++ D+  +   ++G    V    +L +A      H  +  +++EM + ++
Sbjct: 566 DCLAKHGLYLQVRDVIYEFG-KMGLKPTVMTYNILMNAYGRGGQHYKLPQLLKEMTALEL 624

Query: 380 RWNVTTANIILLAYLKMKDF 399
           + +  T   ++ AY +++DF
Sbjct: 625 KPDSITYCTMIYAYARVRDF 644



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+    ++ + WK +  EK          +I  L + GL  +      E     LKP++ 
Sbjct: 535 RAGDTEKLMETWKTMVDEKFGGTRVIFHMVIDCLAKHGLYLQVRDVIYEFGKMGLKPTVM 594

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y + G+  +    L EM  + L P S TY  +I AY + + +       K M
Sbjct: 595 TYNILMNAYGRGGQHYKLPQLLKEMTALELKPDSITYCTMIYAYARVRDFSRAFYYHKQM 654

Query: 236 KLDGCSPDHITYNLLI 251
             +G  PD  +Y  L+
Sbjct: 655 VRNGQIPDPRSYKKLL 670



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL E+A   + +M+   LKP+LE Y +++    + G   + +     M +         +
Sbjct: 502 GLHEKAHAIYMDMKREGLKPTLETYTALLDTLRRAGDTEKLMETWKTMVDEKFGGTRVIF 561

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I    K+ +Y ++ D+  +  K+ G  P  +TYN+L+  +   G   ++    K M 
Sbjct: 562 HMVIDCLAKHGLYLQVRDVIYEFGKM-GLKPTVMTYNILMNAYGRGGQHYKLPQLLKEMT 620

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
              +   S T   ++ AY       +   ++K+++ N + P
Sbjct: 621 ALELKPDSITYCTMIYAYARVRDFSRAFYYHKQMVRNGQIP 661


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 123/305 (40%), Gaps = 36/305 (11%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++++   FD +K IE+   R N      ++  LC      +A R   +M    + P++ 
Sbjct: 202 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y++++  + K GK  EA     EM  M++ P   TY  L+     +   DE +    +M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM 321

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC  D ++YN LI  F  A  ++     ++ M  + +   + T   ++  +   G +
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           DK ++F+ ++         D      +++  N +   L D G+                 
Sbjct: 382 DKAQEFFSQM---------DFFGISPDIWTYNILLGGLCDNGE----------------- 415

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           L  A +        +  +M+  ++  ++ T   ++    K    +    L   L  + +K
Sbjct: 416 LEKALV--------IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK 467

Query: 416 PDIVT 420
           PDIVT
Sbjct: 468 PDIVT 472



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 55/120 (45%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G +++A   F +M+ F + P +  YN ++ G    G+  +AL+   +M++  +     
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  +I+   K    +E       + L G  PD +TY  ++      GLL  +E  Y  M
Sbjct: 437 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 104/280 (37%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C    + +AV    +M     KP +  YN+II    K  + N+A  F  E++   
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L+        + +    L  M     +P+ ITY+ L+  F   G +   +
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+   +     T  ++++       +D+  + +  +++            LA+V 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGC---------LADVV 331

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
             N + +     G   A R+                     G+  + REM    +  N  
Sbjct: 332 SYNTLIN-----GFCKAKRV-------------------EDGM-KLFREMSQRGLVSNTV 366

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T N ++  + +  D    +   S++    + PDI T  IL
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC+ G +E+A+  F++M+   +   +  Y ++I G  K GK  EA      +    
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           L P   TY  ++       +  E++     MK +G
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 66/359 (18%), Positives = 144/359 (40%), Gaps = 13/359 (3%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R  K   R  ++    D++ ++ KSR    I +FN  +++  + +    +  +   ++ME
Sbjct: 55  RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFN--RLLSAIVKLKKYDVVISLGKKME 112

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY 225
              ++  L  +N +I+ +    + + AL  L +M ++   P   T   L+  + +  ++ 
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D + +  KM+++ G  PD + YN +I        +      +K +  K +     T  A+
Sbjct: 173 DAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           ++   N        +    ++  +          L + ++KN       +L +++     
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 291

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTTANIILLAYLKMKDFKHL 402
             ++V    L++  CL  H  ID   +    M S     +V + N ++  + K K  +  
Sbjct: 292 DPDIVTYSSLVNGLCL--HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
             L  E+  R +  + VT   L        D   A E + ++ F   + +I T  ++L 
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 408


>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
 gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
          Length = 486

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 36/309 (11%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  +VFDM +     +  E    K++ +L + G    A + F EM    L+P++E+Y ++
Sbjct: 106 QALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTAL 165

Query: 181 IHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y++    ++A   L+ MK +    P   TY  L++A      +D +D   K M    
Sbjct: 166 LAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERL 225

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKM 298
            +P+ +T N+++  +   G   +ME     ML          TM  IL  + N G +D M
Sbjct: 226 ITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMM 285

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           E +Y++  N     +      L   Y K  M+ ++                         
Sbjct: 286 ESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM------------------------- 320

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N I+ A+  + D K++ +   ++ +  +K D 
Sbjct: 321 ---------SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADT 371

Query: 419 VTIGILYDA 427
            T   L + 
Sbjct: 372 KTFCCLING 380



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           A KP +   N I+  +  +GK +    +  + +   + P++ T++ LI +YGK +MYD++
Sbjct: 261 ACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM 320

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              ++ M+         TYN +I+ FA  G  K ME T+  M ++ M   + T   +++ 
Sbjct: 321 SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLING 380

Query: 289 YMNFGMLDKM 298
           Y N G+  K+
Sbjct: 381 YANAGLFHKV 390



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++   F ++P    +N +I  Y K   +++    +  M+++     + TY+ +I+A+  
Sbjct: 289 YEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFAD 348

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                 +++    M+ +G   D  T+  LI  +A AGL  ++  + +  L  +  +  +T
Sbjct: 349 VGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ--LAAKFEIPENT 406

Query: 282 MV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
               A++ A      L +ME+ Y R+   +          + E Y K  M  ++
Sbjct: 407 AFYNAVIAACAKADDLIEMERVYTRMKERQCVCDSRTFEIMVEAYEKEGMNDKI 460



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 24/232 (10%)

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL--- 349
           G  ++ +K +  +L        +L   L   Y ++ +   +DD    L +  G  +    
Sbjct: 138 GQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNL---IDDAFSILDTMKGLPQCQPD 194

Query: 350 VWCLRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           V+    L  AC+ + +   +DS+ +EM+   +  N  T NI+L  Y ++  F  +  +LS
Sbjct: 195 VFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLS 254

Query: 408 E-LPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAV 462
           + L +   KPD+ T+ I+       F   G ++M +     F+      E  T  +++  
Sbjct: 255 DMLVSTACKPDVWTMNIILSV----FGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRW---TYQNLIDLVIK-HNGKNLDGTF 510
           YGK    R  +++ S +E   + +  W   TY N+I+      + KN++ TF
Sbjct: 311 YGKK---RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTF 359


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 23/296 (7%)

Query: 143 QKIIGML----CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           +++ G+L    C+ G ME+AVR   EM    LK ++ I N++I GY K+G+  EA     
Sbjct: 332 ERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFV 391

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            M + NL P   +Y+ L+  Y +     +  M  + M  DG +P  +TYN +I+     G
Sbjct: 392 GMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVG 451

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-- 316
                   +  M+ + +     +   +LD +   G  D+    +K +L  R   K  +  
Sbjct: 452 SYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEIL-GRGFTKSTVAF 510

Query: 317 ------VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS- 369
                 + K+ ++     +F R+ +LG      +   E+ +  R LS     +    ++ 
Sbjct: 511 NTMISGLCKMGKLMEAGAVFDRMKELG------LSPDEITY--RTLSDGYCKNGNVQEAF 562

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +   ME   +  ++   N ++    K++    +  LL E+ TR + P++VT G L
Sbjct: 563 QIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTL 618



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 161/392 (41%), Gaps = 39/392 (9%)

Query: 125 VFDMWKNIEKSRINEFNSQK----IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           VFD     E SRI      +    ++G L ++G    AV  F ++ G  + P + + + +
Sbjct: 178 VFD-----EMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIV 232

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           ++ + ++G+ + A+  L +M +  L P   TY+GL+  Y     ++ ++  L++M   G 
Sbjct: 233 VNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGV 292

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL-DAYMNFGMLDKME 299
           S + +T  +L++ +   G +   E   + +    + +    +  +L D Y   G ++   
Sbjct: 293 SRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAV 352

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           +    +L  R  LK ++V  +    IK Y   +L  + +  A R+    + W L+     
Sbjct: 353 RIRDEML--RVGLKVNMV--ICNTLIKGY--CKLGQVCE--AERVFVGMVDWNLK---PD 401

Query: 360 CLLSHRGIDSVVREMESAK------------VRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           C   +  +D   RE + +K            +   V T N ++   + +  +     L  
Sbjct: 402 CYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWH 461

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYG 464
            +  R V P+ ++   + D      D   A+ +WK I   GF   TV  NT    L   G
Sbjct: 462 LMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMG 521

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           K   L     V+  ++         TY+ L D
Sbjct: 522 K---LMEAGAVFDRMKELGLSPDEITYRTLSD 550



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 136/349 (38%), Gaps = 51/349 (14%)

Query: 128 MWKNI-----EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +WK I      KS +  FN+  +I  LC+ G + EA   F  M+   L P    Y ++  
Sbjct: 494 LWKEILGRGFTKSTV-AFNT--MISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSD 550

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY K G   EA      M+   +S   + Y+ LI    K +  +++   L  M+  G SP
Sbjct: 551 GYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSP 610

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL----------------RSSTMVAIL 286
           + +TY  LI  +     L +    Y  M+ +                    R S    IL
Sbjct: 611 NVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVIL 670

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPL----------KEDLVRKLAEVYIKNYMF------ 330
           D  ++F +L    K   +L+ +   L          K D+   L+   + N         
Sbjct: 671 DKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKS 730

Query: 331 SRLDDLGDDLASRIGRTEL----VWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNV 383
            +LD+    L+  + R  L     +C   L HAC +S   +D   +   EM    +  N+
Sbjct: 731 GKLDEARSVLSVLMSRGFLPDNFTYC--TLIHACSVSGN-VDEAFKLRDEMLEKGLIPNI 787

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIG 431
           T  N ++    K+ +    + L  +L  + + P+ VT  IL     RIG
Sbjct: 788 TIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIG 836



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 48/117 (41%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  LC+ G ++EA      +      P    Y ++IH  S  G  +EA    +EM E  L
Sbjct: 724 IDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGL 783

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            P    Y+ LI    K    D        +   G  P+ +TYN+LI  +   G L +
Sbjct: 784 IPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDK 840



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 114/282 (40%), Gaps = 22/282 (7%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           E G+ + A+  F EM      P L   + ++    + G+   A++  +++    + P   
Sbjct: 168 ERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVY 227

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
               ++ A+ +    D     L+ M  +G  P+ +TYN L+  +   G  + +E   + M
Sbjct: 228 MCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLM 287

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-M 329
             + +     T   ++  Y   G +D+ EK  + +      + ++   ++  V +  Y  
Sbjct: 288 SERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDE---RVYGVLVDGYCQ 344

Query: 330 FSRLDD---LGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVREMES---AKVRWN 382
             R++D   + D++  R+G +  +V C  L+   C L        V E E      V WN
Sbjct: 345 MGRMEDAVRIRDEML-RVGLKVNMVICNTLIKGYCKLGQ------VCEAERVFVGMVDWN 397

Query: 383 VT----TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +     + N +L  Y +        +L  E+    + P +VT
Sbjct: 398 LKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVT 439



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 52/130 (40%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN  I G  K GK +EA   L+ +      P + TY  LI A       DE       M
Sbjct: 719 VYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEM 778

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G  P+   YN LI      G + R +  +  +  K +   + T   ++  Y   G L
Sbjct: 779 LEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDL 838

Query: 296 DKMEKFYKRL 305
           DK  +  +++
Sbjct: 839 DKASRLREKM 848


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 127/318 (39%), Gaps = 44/318 (13%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  LC E  M+E      +M G  L+P++  Y +I++ + K G+   A   L  M  
Sbjct: 238 NAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVI 297

Query: 203 MNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              +P   T+  L+   +   +++D +DM  K M  +G +P  ++YN+LI+     G LK
Sbjct: 298 TGCTPNVATFTALVGGLFNDGRVHDALDM-WKCMVAEGWAPSTVSYNVLIRGLCSVGDLK 356

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
                   M        + T   ++D +   G LD     +  +  +R+  K ++V    
Sbjct: 357 GASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDM--TRSGCKPNVVVYTN 414

Query: 320 LAEVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSH 358
           +  V+ K  MF++ + L D +                       R+GR   V+   +  H
Sbjct: 415 MVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVF-HEMRRH 473

Query: 359 ACLLSHRGID----------------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            C  + R  +                 +V EM++  +  ++ T N ++    +M+  +  
Sbjct: 474 GCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREA 533

Query: 403 RVLLSELPTRHVKPDIVT 420
              +  +  R ++PD  T
Sbjct: 534 MFFVGRMIVRGIQPDAFT 551



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 5/167 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F A++  L N  R   +    DMWK +  E    +  +   +I  LC  G ++ A     
Sbjct: 307 FTALVGGLFNDGR---VHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLN 363

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +ME     P+   Y+++I G+SK G  + A+   N+M      P    Y  ++  + K  
Sbjct: 364 DMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKL 423

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           M+++ +  +  M ++ C P+ +T+N LI+       + R  G +  M
Sbjct: 424 MFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEM 470



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 51/123 (41%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N      +I  LC    +  A+  F EM      P+   YN ++HG  + G   
Sbjct: 437 VENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCG 496

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL  + EM+   +     TY+ ++    + +M  E    +  M + G  PD  T+  +I
Sbjct: 497 DALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAII 556

Query: 252 QEF 254
             +
Sbjct: 557 HAY 559



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEME----------------GFALKPSLEIYNSIIH 182
           E    ++ G+ C EG +  AV AF                    G A   +  +YN +I 
Sbjct: 83  ELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRLYNHLID 142

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              +        L    M++  + P   TY+ L++A  +          L  M   GC P
Sbjct: 143 ALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPP 202

Query: 243 DHITYNLLIQEFACAG 258
           D +TY  ++      G
Sbjct: 203 DDVTYGTIVSALCTLG 218



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 14/185 (7%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++  +     +W ++ +S  + N      ++G+ C++ +  +A     +M      P+ 
Sbjct: 385 SKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNT 444

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLK 233
             +N++I       +   AL   +EM+     P   TY+ L+   + +    D + M ++
Sbjct: 445 VTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIE 504

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-----SSTMVAILDA 288
           M    G     +TYN ++     +GL +   G        RM +R     + T  AI+ A
Sbjct: 505 MQN-HGIELSLVTYNTVV-----SGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHA 558

Query: 289 YMNFG 293
           Y   G
Sbjct: 559 YCKEG 563


>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Brachypodium distachyon]
          Length = 454

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 17/278 (6%)

Query: 53  APSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDH--FWAVI 110
           AP++D +     T LV +Y     L+  +  +        ++++   D   D   F  +I
Sbjct: 126 APTVDVY-----TALVGAYGYSGMLDEALATV--------ELMKGAADCKPDEYTFSILI 172

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFA 169
                S R   IP V D    +     N      II    + G++ E   A   M E   
Sbjct: 173 NCCCKSRRFDLIPPVLDEMSYLGIG-CNVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGD 231

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P +   NSII  Y   G+ ++   + +E + M + P S T++ +I++YGK  M++++ 
Sbjct: 232 NVPDIYTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMM 291

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           M LK MK    SP   T+N++I+ F  AG +++ME  ++ M  + +     T  ++++ Y
Sbjct: 292 MVLKYMKRRFFSPTAATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGY 351

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
              G+LDK+    ++  N+   L       +   Y K+
Sbjct: 352 SKAGILDKVPAIIRQTENTDVVLDTPFFNCVINAYAKS 389



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 88/190 (46%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +    II      G +++  + + E +   ++P    +N +I  Y K     + ++ L  
Sbjct: 237 YTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKY 296

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK    SP + T++ +I+ +G+    ++++   ++MK+ G  P+ ITY  L+  ++ AG+
Sbjct: 297 MKRRFFSPTAATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGI 356

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L ++    +      + L +     +++AY   G +  ME+  + +   +    + +   
Sbjct: 357 LDKVPAIIRQTENTDVVLDTPFFNCVINAYAKSGDIKIMEEMLQLMKEKKCKPGKVIYTT 416

Query: 320 LAEVYIKNYM 329
           + + YI + M
Sbjct: 417 MIQAYIAHGM 426



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 42/290 (14%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           L P++++Y +++  Y   G  +EAL  +  MK   +  P   T+  LI    K + +D I
Sbjct: 125 LAPTVDVYTALVGAYGYSGMLDEALATVELMKGAADCKPDEYTFSILINCCCKSRRFDLI 184

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-STMVAILD 287
              L  M   G   + + +N +I  +  AG+L  M     +ML    ++    TM +I+ 
Sbjct: 185 PPVLDEMSYLGIGCNVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIW 244

Query: 288 AYMNFGMLDKMEKFYKRL------LNSRT-------PLKEDLVRKLAEV--YIKNYMFSR 332
           AY N G +D MEK+Y          +SRT         K ++  K+  V  Y+K   FS 
Sbjct: 245 AYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSP 304

Query: 333 LDDLGDDLASRIGRT----ELVWCLRLL-------------------SHACLLSHRGIDS 369
                + +    GR     ++ +  RL+                   S A +L    + +
Sbjct: 305 TAATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGILDK--VPA 362

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           ++R+ E+  V  +    N ++ AY K  D K +  +L  +  +  KP  V
Sbjct: 363 IIRQTENTDVVLDTPFFNCVINAYAKSGDIKIMEEMLQLMKEKKCKPGKV 412



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 132/333 (39%), Gaps = 43/333 (12%)

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-LDGCSPDHITYNLLI 251
           A LF   + E  L+P  D Y  L+ AYG   M DE    +++MK    C PD  T+++LI
Sbjct: 113 AALFRVMLSEERLAPTVDVYTALVGAYGYSGMLDEALATVELMKGAADCKPDEYTFSILI 172

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV----AILDAYMNFGMLDKMEKFYKRLLN 307
               C    +R +     +L +  +L     V    AI+D Y   GML +M      +L 
Sbjct: 173 N---CCCKSRRFD-LIPPVLDEMSYLGIGCNVVIHNAIIDGYGKAGMLAEMGTALCNMLE 228

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGRTELV--------WCLRLLS 357
                       + ++Y  N +     + G  DD+       +L+        + + + S
Sbjct: 229 DGD--------NVPDIYTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKS 280

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           +     H  +  V++ M+         T NII+  + +  D + +      +  + +KP+
Sbjct: 281 YGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKPN 340

Query: 418 IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL--------VLAVYGKGHFL 469
            +T   L +    G+   G L+   ++  + +  E NTD +        V+  Y K   +
Sbjct: 341 PITYCSLVN----GYSKAGILD---KVPAIIRQTE-NTDVVLDTPFFNCVINAYAKSGDI 392

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +  EE+   ++    +  +  Y  +I   I H 
Sbjct: 393 KIMEEMLQLMKEKKCKPGKVIYTTMIQAYIAHG 425


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 2/181 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +IG LC++G +++A++ + EM     KP +  +NS+I+G  K  K  EAL  
Sbjct: 440 LNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGL 499

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +M    +   + TY+ LI A+ + ++  + D  +  M+  GC  D+ITYN LI+    
Sbjct: 500 YRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCK 559

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G  ++  G  + M  + +    ++   +++++   G ++   +F + ++  +  L  D+
Sbjct: 560 TGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMI--QRGLTPDI 617

Query: 317 V 317
           V
Sbjct: 618 V 618



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 134/323 (41%), Gaps = 17/323 (5%)

Query: 128 MWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           ++KN  I     + F    +I  LC++G +  A+    EM     +P++  Y  +I G+ 
Sbjct: 359 LYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFC 418

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDH 244
           K G F EA   +N M    LS  +  Y+ LI A  K  K+ D + M    M   GC PD 
Sbjct: 419 KQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQM-YGEMSSKGCKPDI 477

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            T+N LI        ++   G Y+ ML + +   + T   ++ A++   ++ + +K    
Sbjct: 478 YTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGE 537

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           +     PL       L +   K     +   L + +        +  C  L++  C  + 
Sbjct: 538 MRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFC-RTG 596

Query: 365 RGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI- 421
           +  D++  +R+M    +  ++ T N ++    KM  F+    L + L  + + PD VT  
Sbjct: 597 KVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYN 656

Query: 422 ---------GILYDARRIGFDGT 435
                    G+  DA ++ F G 
Sbjct: 657 TLISRYCYEGLFNDACQLLFKGV 679



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 30/211 (14%)

Query: 53  APSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVS------CPLQILQHDGDWTKDHF 106
           A ++ Y++  H  L +E          LIQ+ +K V       CPL  + ++G       
Sbjct: 510 ANTVTYNTLIHAFLRLE----------LIQQADKLVGEMRFRGCPLDNITYNG------- 552

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
             +    K  +  + +  +  M+       IN  N   +I   C  G + +A++  ++M 
Sbjct: 553 -LIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNI--LINSFCRTGKVNDALQFLRDMI 609

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              L P +  YNS+I+G  K+G+F EAL   N ++   + P + TY+ LI  Y    +++
Sbjct: 610 QRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFN 669

Query: 227 EIDMCLKMMK--LDGCSPDHITYNLLIQEFA 255
             D C  + K   +G  P+ IT+++LI  F 
Sbjct: 670 --DACQLLFKGVSNGFIPNEITWSILINYFV 698



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 114/306 (37%), Gaps = 45/306 (14%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M    + P++  +  ++  +  + + + A   L +M +    P S  Y  LI 
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           A  +    +E    L+ M L GC PD  T+N +I     AG +        + L  RM L
Sbjct: 244 ALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHE-----AAKLHDRMLL 298

Query: 278 RSSTMVAILDAYMNFG------------MLDKMEK----FYKRLLN-----SRTPLKEDL 316
           R  T  A++  Y+  G            ML K+       Y  L+N      R    +DL
Sbjct: 299 RDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDL 358

Query: 317 VRK-----------------LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + K                 +  +  K Y+ S L+ L D++  +     ++    L+   
Sbjct: 359 LYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFL-DEMVKKGFEPNVITYTILIDGF 417

Query: 360 CLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           C   H      VV  M +  +  N    N ++ A  K    +    +  E+ ++  KPDI
Sbjct: 418 CKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDI 477

Query: 419 VTIGIL 424
            T   L
Sbjct: 478 YTFNSL 483



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 111/282 (39%), Gaps = 26/282 (9%)

Query: 153 GLMEEAVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           G  EEA    ++ M     +P    +N +I G  K G    AL FL+EM +    P   T
Sbjct: 350 GRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVIT 409

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LI  + K   ++E    +  M   G S + + YN LI      G ++     Y  M 
Sbjct: 410 YTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMS 469

Query: 272 TKRMHLRSSTMVAILDAYMNFGML--DKMEK---FYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +K       T  +++     +G+   DKME+    Y+ +L             L   +++
Sbjct: 470 SKGCKPDIYTFNSLI-----YGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLR 524

Query: 327 NYMFSRLDDLGDDLASR------IGRTELV--WCLRLLSHACLLSHRGIDSVVREMESAK 378
             +  + D L  ++  R      I    L+   C    +  CL        ++ +M   +
Sbjct: 525 LELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCL-------GLIEQMFGEE 577

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +  ++ + NI++ ++ +          L ++  R + PDIVT
Sbjct: 578 IFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVT 619


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 3/302 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G   EA+    +M  +  +P+   Y  +++   K G+   A+  L +M+E N
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  Y  +I    K+   D        M++ G + + ITYN+LI  F  AG      
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ ++++    T   ++D+++  G L + E+ +K +++            L + +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            K     + + + D + S+ G    +    +L +    ++R  D   + R+M    V  +
Sbjct: 379 CKENHLDKANQMVDLMVSK-GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
             T N ++  + ++      + L  E+ +R V P+IVT  IL D      +   ALE+++
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 497

Query: 443 RI 444
           +I
Sbjct: 498 KI 499



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 13/315 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S Q     ++ + +E+  I  +      II  LC+ G ++ A   F EME   +  ++ 
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+   G++++    L +M +  ++P   T+  LI ++ K     E +   K M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +PD ITY  LI  F     L +       M++K       T   +++ Y     +
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419

Query: 296 DK-MEKFYK---RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
           D  +E F K   R + + T     L++   E+   N       +L  ++ SR     +V 
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA----KELFQEMVSRKVPPNIVT 475

Query: 352 CLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
              LL   C    S + ++ +  ++E +K+  ++   NII+              L   L
Sbjct: 476 YKILLDGLCDNGESEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534

Query: 410 PTRHVKPDIVTIGIL 424
           P + VKP + T  I+
Sbjct: 535 PLKGVKPGVKTYNIM 549



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 40/327 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG + EA    +EM    + P    Y S+I G+ K    ++A   ++ M    
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ LI  Y K    D+     + M L G   D +TYN LIQ F   G L   +
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+++++     T   +LD   + G  +K  + ++++  S+  L         ++ 
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL---------DIG 509

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           I N +   + +     AS++   +  W L      C L  +G            V+  V 
Sbjct: 510 IYNIIIHGMCN-----ASKV---DDAWDL-----FCSLPLKG------------VKPGVK 544

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA---LEMW 441
           T NI++    K        +L  ++      PD  T  IL  A     D T +   +E  
Sbjct: 545 TYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHF 468
           KR GF   +V+ +T  +V+ +   G  
Sbjct: 605 KRCGF---SVDASTIKMVIDMLSDGRL 628



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 131 NIEKSRINEFNSQKI----------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           N+ K    E  S+K+          +  LC+ G  E+A+  F+++E   ++  + IYN I
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           IHG     K ++A      +    + P   TY+ +I    K     E ++  + M+ DG 
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574

Query: 241 SPDHITYNLLIQ 252
           +PD  TYN+LI+
Sbjct: 575 APDGWTYNILIR 586



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 40/321 (12%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     ++++Q   V  + K +E   I  N +    +I   C    +  A  A  ++   
Sbjct: 93  RLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKL 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P+   ++++I+G    G+ +EAL  ++ M EM   P   T + L+          E 
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   GC P+ +TY  ++     +G         + M  + + L +     I+D 
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGR 346
               G LD     +  +         ++      +   N +     + G  DD A     
Sbjct: 273 LCKHGSLDNAFNLFNEM---------EMKGITTNIITYNILIGGFCNAGRWDDGA----- 318

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                                  ++R+M   K+  NV T ++++ +++K    +    L 
Sbjct: 319 ----------------------KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 407 SELPTRHVKPDIVTIGILYDA 427
            E+  R + PD +T   L D 
Sbjct: 357 KEMIHRGIAPDTITYTSLIDG 377



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 124 QVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           +  ++++ IEKS+    I  +N   II  +C    +++A   F  +    +KP ++ YN 
Sbjct: 491 KALEIFEKIEKSKMELDIGIYNI--IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           +I G  K G  +EA L   +M+E   +P   TY+ LI+A+
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 588


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 61/301 (20%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I G++  +G  E+A+  FQ M+    KP+ E YN +I+ Y K  K   +     EM+   
Sbjct: 245 IEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQ 304

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-----------------------GCS 241
             P   TY  L+ A+ +  + ++ +   + ++ D                       GC 
Sbjct: 305 CKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCE 364

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFGMLDKME 299
           PD  +YN+++  +  AGL    E  ++ M  KR+ +  +  + + +L AY     + K E
Sbjct: 365 PDRASYNIMVDAYGRAGLHSDAEAVFEEM--KRLGIAPTMKSHMLLLSAYSRARDVTKCE 422

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
              K +  S   ++ D        ++ N M         +L  R+G+             
Sbjct: 423 AIVKEM--SENGVEPD-------TFVLNSML--------NLYGRLGQ------------- 452

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                  ++ ++ EME+     +++T NI++  Y K    + +  L  EL  R+ KPD+V
Sbjct: 453 ----FTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVV 508

Query: 420 T 420
           T
Sbjct: 509 T 509



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 48/328 (14%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE--ID 229
           P+ + Y  +I  Y   G   +A   L EM+  ++SP    Y+  I+   K K   E  ID
Sbjct: 201 PTEDTYTLLIKAYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAID 260

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           +  + MK D C P   TYNL+I  +  A         +  M + +      T  A+++A+
Sbjct: 261 V-FQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAF 319

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKED--LVRKLAEVYIKNYMFSRLDDLG--DDLASRIG 345
              G+ +K E+ +++L       +ED  +  +    Y    +FS +  +G   D AS   
Sbjct: 320 AREGLCEKAEEIFEQL-------QEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDRAS--- 369

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
                + + + ++     H   ++V  EM+   +   + +  ++L AY + +D      +
Sbjct: 370 -----YNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAI 424

Query: 406 LSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFK-------------TVE 452
           + E+    V+PD   +  +             L ++ R+G   K             T +
Sbjct: 425 VKEMSENGVEPDTFVLNSM-------------LNLYGRLGQFTKMEKILAEMENGPCTAD 471

Query: 453 INTDPLVLAVYGKGHFLRYCEEVYSSLE 480
           I+T  +++ +YGK  FL   EE++  L+
Sbjct: 472 ISTYNILINIYGKAGFLERIEELFVELK 499



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 75/156 (48%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL  +A   F+EM+   + P+++ +  ++  YS+     +    + EM E  + P +   
Sbjct: 381 GLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVL 440

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + ++  YG+   + +++  L  M+   C+ D  TYN+LI  +  AG L+R+E  +  +  
Sbjct: 441 NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKE 500

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +       T  + + AY    +  K  + ++ +++S
Sbjct: 501 RNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDS 536



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   SR+R + +   + K + ++ +  + F    ++ +    G   +  +   EME   
Sbjct: 408 LLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP 467

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
               +  YN +I+ Y K G          E+KE N  P   T+   I AY + K+Y +  
Sbjct: 468 CTADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCL 527

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
              + M   GC+PD  T  +L+   +    ++++    ++M
Sbjct: 528 EIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTSVLRTM 568



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 61/324 (18%), Positives = 126/324 (38%), Gaps = 62/324 (19%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           ++  +  P    ++ LI AYG+   + E +     +    C P   TY LLI+ +  AGL
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +++ E    ++L +  +   S  V + +AY+  G++ K +   ++ ++    +K D  + 
Sbjct: 219 IEKAE----AVLIEMQNHHVSPSVTVYNAYIE-GLM-KRKGNTEQAIDVFQRMKRDRCKP 272

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             E Y  N M         +L  +  ++ + W L                   EM S + 
Sbjct: 273 TTETY--NLMI--------NLYGKASKSYMSWKLFC-----------------EMRSHQC 305

Query: 380 RWNVTTANIILLAYLK-------------MKDFKHLRV----------LLSELPTRHVKP 416
           + N+ T   ++ A+ +             +++  H+            + S +     +P
Sbjct: 306 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEP 365

Query: 417 DIVTIGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCE 473
           D  +  I+ DA  R G   D     E  KR+G       + +  L+L+ Y +   +  CE
Sbjct: 366 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI---APTMKSHMLLLSAYSRARDVTKCE 422

Query: 474 EVYSSLEPYSREKKRWTYQNLIDL 497
            +   +     E   +   ++++L
Sbjct: 423 AIVKEMSENGVEPDTFVLNSMLNL 446


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 2/192 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + + + + +++   I+K  +  N +    I+  LC  G +  A   FQEM  + LKP++ 
Sbjct: 419 KVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIV 478

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           IY +I+ G  K G+F EA+  L  MK+  LSP    Y+ +I  + K    +E    L  M
Sbjct: 479 IYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEM 538

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G  P+  TY   I  +  AG ++  E ++  ML   +         ++D Y   G  
Sbjct: 539 IAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNT 598

Query: 296 DKMEKFYKRLLN 307
            K    ++ +L+
Sbjct: 599 TKAFAKFRCMLD 610



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 131/335 (39%), Gaps = 21/335 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +EE      +ME     P+L  Y+ +I G  + G  +EAL     M    
Sbjct: 238 LINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKG 297

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P +  Y  LI  + + K   E    L  M   G  PDH+ Y  LI  F     +    
Sbjct: 298 LLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAF 357

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAE 322
              + M  +++ L + T  A++      G L+K E  +  +  +   +K D+     L E
Sbjct: 358 QVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM--TMMGIKPDIQTYNCLIE 415

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAK 378
            Y K     +  +L  ++           C  +++  C   H G     + + +EM S  
Sbjct: 416 GYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC---HCGDLTRANELFQEMISWG 472

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           ++ N+     I+   +K   F+    +L  +  + + PD+      Y+   IGF   G +
Sbjct: 473 LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDV----FCYNTVIIGFCKAGKM 528

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR-YC 472
           E  K   +L + +     P    VY  G F+  YC
Sbjct: 529 EEGKS--YLVEMIAKGLKP---NVYTYGAFIHGYC 558



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 35/288 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+EG ++ A     +M    + P++  YN++I+G  K+G+  +A    + 
Sbjct: 653 FTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDG 712

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           + E  L+  S TY  +I  Y K     E       MKL G  PD   Y  LI     AG 
Sbjct: 713 IPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGN 772

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            ++    +  M+ + +   +    A++D +   G                         K
Sbjct: 773 TEKALSLFLGMVEEGIA-STPAFNALIDGFFKLG-------------------------K 806

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           L E Y        ++D+ D+    I    + + + +  H  + + +  + +  EM+   V
Sbjct: 807 LIEAY------QLVEDMVDN---HITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNV 857

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             NV T   +L  Y ++     +  L  E+  R +KPD +   ++ DA
Sbjct: 858 MPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDA 905



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 35/229 (15%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K ++N F    +I  LC+ G +E+A   F EM    +KP ++ YN +I GY K+    +A
Sbjct: 367 KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKA 426

Query: 194 LLFLNEMKEMNLS-----------------------------------PQSDTYDGLIQA 218
              L E+K+ NL+                                   P    Y  +++ 
Sbjct: 427 YELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKG 486

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             K   ++E    L +MK  G SPD   YN +I  F  AG ++  +     M+ K +   
Sbjct: 487 LVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             T  A +  Y   G +   E+ +  +L+S     + +   L + Y K+
Sbjct: 547 VYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKD 595



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 11/264 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPS 173
           +S  + + F ++  ++   +  + F    +I   C+ G  E+A+  F  M  EG A  P+
Sbjct: 734 KSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA 793

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              +N++I G+ K+GK  EA   + +M + +++P   TY  LI+ +       E +    
Sbjct: 794 ---FNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFM 850

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+     P+ +TY  L+  +   G    M   +  M+ + +         ++DA++  G
Sbjct: 851 EMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEG 910

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
              K  K    +L+    + ++L   L +   K+   S +  + D++  +  +  L  C 
Sbjct: 911 NWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCG 970

Query: 354 RLLSHACLLSHRG-IDSVVREMES 376
            L+   C     G  D  +R +ES
Sbjct: 971 TLV---CCFHRAGRTDEALRVLES 991



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 102/286 (35%), Gaps = 53/286 (18%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM--NLSPQ 208
           ++G + EAV  F   +       L   NS+      + K N   LF    K M   + P 
Sbjct: 175 KKGFLNEAVSVFLGAKTNEFIVGLACCNSL---SKDLLKGNRVELFWKVYKGMLGAIVPD 231

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI AY +    +E    L  M+  GC P+ +TY+++I     AG +       +
Sbjct: 232 VYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKR 291

Query: 269 SMLTKRMHLRSSTMVAILDAYM-------NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           SM  K +   +     ++D +           MLD+M             LK D V   A
Sbjct: 292 SMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTM---------GLKPDHVAYTA 342

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
            +      F +  D+G                            G   V  EM + K++ 
Sbjct: 343 LI----NGFVKQSDIG----------------------------GAFQVKEEMFARKIKL 370

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N  T   ++    K+ D +    L SE+    +KPDI T   L + 
Sbjct: 371 NTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEG 416


>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
 gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
          Length = 442

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 3/224 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I       R  +IP + D    +   + N      II    + G++EE   A   M
Sbjct: 163 FSVLINCCSKLRRFDRIPAILDEMSYL-GLQCNAVIHNAIIDGYGKAGMLEEMENALTSM 221

Query: 166 -EGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            E     P +   NSII  Y   G + +E   + +E + M + P + T++ +I++YG  K
Sbjct: 222 LEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAK 281

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           M+D++   LK MK    SP  +T+N++I+ F  AG +++ME  ++ M  + +     T  
Sbjct: 282 MHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYC 341

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++++ Y   G LDK+    ++  N+   L       + + Y K+
Sbjct: 342 SLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 134/307 (43%), Gaps = 21/307 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++G     GL+++A+   ++M+G A  KP    ++ +I+  SK+ +F+     L+EM  +
Sbjct: 130 LVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYL 189

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAG-LLK 261
            L   +  ++ +I  YGK  M +E++  L  M  DG S PD  T N +I  +   G  + 
Sbjct: 190 GLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIH 249

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLV- 317
            ME  Y       +   + T   ++ +Y N  M DKM    K+ K+   S T +  +++ 
Sbjct: 250 EMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIII 309

Query: 318 ---RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC--LRLLSHACLLSHRGIDSVVR 372
               +   +    Y F  +   G      +    + +C  +   S A  L    +  ++R
Sbjct: 310 ESFGRAGNIEKMEYYFRLMKIQG------VKPNPITYCSLVNGYSKAGFLDK--VPGIIR 361

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI-G 431
           + E+  V  +    N ++ AY K  D K +  +L  +  +  KPD VT   +  A  + G
Sbjct: 362 QTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHG 421

Query: 432 FDGTGAL 438
            D    L
Sbjct: 422 MDEAANL 428


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 139/365 (38%), Gaps = 56/365 (15%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++R L   S+     ++FD+   +EK  ++      I+      G  + A+  F +M+  
Sbjct: 186 MVRILGRESQHSIASKLFDLIP-VEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEI 244

Query: 169 ALKPSLEIYNSIIHGYSKIGK------------------------------------FNE 192
            L P+L  YN ++  Y K+G+                                     +E
Sbjct: 245 GLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDE 304

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  FL E+K     P + TY+ ++Q +GK  +Y E    LK M+ + C PD +TYN L  
Sbjct: 305 ARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAA 364

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            +  AG L        +M +K +   + T   ++DAY   G  D   + +         L
Sbjct: 365 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFS--------L 416

Query: 313 KEDLVRKLAEVYIKNYMF------SRLDDLGDDLA----SRIGRTELVWCLRLLSHACLL 362
            +DL      VY  N +       SR +D+   L     +        W   L   +   
Sbjct: 417 MKDL-GCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEG 475

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
            H  ++ V+REM++     +  T N ++ AY +         +  E+      P + T  
Sbjct: 476 KHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYN 535

Query: 423 ILYDA 427
            L +A
Sbjct: 536 ALLNA 540



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 143/356 (40%), Gaps = 46/356 (12%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++E +     M    + P+   Y ++I  Y K G+ ++AL   + MK++  +P   TY
Sbjct: 370 GFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTY 429

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + ++   GK    +++   L  MKL+GC+P+  T+N ++   +  G    +    + M  
Sbjct: 430 NSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKN 489

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFS 331
                   T   ++ AY   G      K Y  ++ S  TP           V   N + +
Sbjct: 490 CGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPC----------VTTYNALLN 539

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            L   GD            W             +  +SV+++M +   + N  + +++L 
Sbjct: 540 ALARRGD------------W-------------KAAESVIQDMRTKGFKPNENSYSLLLH 574

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL----YDARRI-GFDGTGALEMWKRIGF 446
            Y K  + K +  +  E+   HV P  + +  L    +  R + G +   A +  ++ G+
Sbjct: 575 CYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGME--RAFDQLQKYGY 632

Query: 447 LFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
               V IN+   +L+++ +        E+   +     +   +TY  L+DL ++  
Sbjct: 633 KPDLVVINS---MLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREG 685



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/322 (19%), Positives = 141/322 (43%), Gaps = 18/322 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +V+  L   SR+  + +V    K +     N      ++ +  EEG      +  +EM+ 
Sbjct: 431 SVLAMLGKKSRTEDVIKVLCEMK-LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKN 489

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P  + +N++I  Y++ G   ++     EM +   +P   TY+ L+ A  +   +  
Sbjct: 490 CGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKA 549

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  ++ M+  G  P+  +Y+LL+  ++ AG +K +E   K +    +      +  ++ 
Sbjct: 550 AESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVL 609

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIG 345
                  L  ME+ + +L   +   K DLV    +  ++ +N MFS+  ++   +     
Sbjct: 610 TNHKCRHLRGMERAFDQL--QKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIH---- 663

Query: 346 RTELVWCLRLLSHACLLS---HRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
             E      L ++ CL+      G     + V++ ++++    +V + N ++  + +   
Sbjct: 664 --ECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGL 721

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
            +    +LSE+ T+ ++P IVT
Sbjct: 722 MQEAIGVLSEMTTKGIQPTIVT 743



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 77/167 (46%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           RAF +++ +  KP L + NS++  +++   F++A   L+ + E  L P   TY+ L+  Y
Sbjct: 622 RAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLY 681

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            +     + +  LK ++  G  PD ++YN +I+ F   GL++   G    M TK +    
Sbjct: 682 VREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTI 741

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            T    L  Y    + D+  +  + ++       E   + L + Y K
Sbjct: 742 VTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCK 788



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    ++ +   EG   +A    + ++    +P +  YN++I G+ + G   EA+  L
Sbjct: 670 NLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVL 729

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P   TY+  +  Y   +++DE +  ++ M    C P  +TY +L+  +  A
Sbjct: 730 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKA 789

Query: 258 G 258
           G
Sbjct: 790 G 790



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +GLM+EA+    EM    ++P++  YN+ + GY+ +  F+EA   +  M E N
Sbjct: 712 VIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHN 771

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLD 238
             P   TY  L+  Y K   Y+E +D   K+ +LD
Sbjct: 772 CRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELD 806



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 9/294 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G  ++A+R F  M+     P++  YNS++    K  +  + +  L
Sbjct: 390 NAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVL 449

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EMK    +P   T++ ++    +   ++ ++  L+ MK  G  PD  T+N LI  +A  
Sbjct: 450 CEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARC 509

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G        Y  M+        +T  A+L+A    G     E   + +        E+  
Sbjct: 510 GSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSY 569

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW----CLRLLSHACLLSH-RGIDSVVR 372
             L   Y K      ++ +  ++    G     W     L L +H C   H RG++    
Sbjct: 570 SLLLHCYSKAGNVKGIEKVEKEIYD--GHVFPSWILLRTLVLTNHKC--RHLRGMERAFD 625

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +++    + ++   N +L  + + K F   R +L  +    ++P++ T   L D
Sbjct: 626 QLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMD 679



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 60/153 (39%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P+L  YN ++  Y + G+  +A   L  ++     P   +Y+ +I+ + +  +  E 
Sbjct: 666 GLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEA 725

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M   G  P  +TYN  +  +A   L        + M+         T   ++D 
Sbjct: 726 IGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDG 785

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           Y   G  ++   F  ++        +  V++L 
Sbjct: 786 YCKAGKYEEAMDFVSKIKELDISFDDQSVKRLG 818


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 157/378 (41%), Gaps = 32/378 (8%)

Query: 67  LVESYHEHQ--ALNALIQRL--NKKVSCPLQILQ---HDGDWTKDHFWAVIRFLKNSSRS 119
           +VE  H+     LNAL+  L  N KVS  + ++      G    +  +  +  LK   +S
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV--LKVMCKS 225

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
            Q     ++ + +E+ +I  +      II  LC++G ++ A   F EME    K  + IY
Sbjct: 226 GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIY 285

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++I G+   G++++    L +M +  ++P    +  LI  + K     E +   K M  
Sbjct: 286 TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G SPD +TY  LI  F     L +       M++K       T   +++ Y    ++D 
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD 405

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG---------DDLASRIGRTE 348
             + ++++          L   +A+    N +     +LG          ++ SR  R +
Sbjct: 406 GLELFRKM---------SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456

Query: 349 LVWCLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           +V    LL   C      + ++ +  ++E +K+  ++   NII+              L 
Sbjct: 457 IVSYKILLDGLCDNGEPEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515

Query: 407 SELPTRHVKPDIVTIGIL 424
             LP + VKPD+ T  I+
Sbjct: 516 CSLPLKGVKPDVKTYNIM 533



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 38/337 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG + EA+     M     KP+L   N++++G    GK ++A+L ++ M E  
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 205 LSPQSDTYDGLIQAYGKY-----------KMYDE------------ID-MC--------- 231
             P   TY  +++   K            KM +             ID +C         
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267

Query: 232 --LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M++ G   D I Y  LI+ F  AG         + M+ +++        A++D +
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
           +  G L + E+ +K ++             L + + K     + + + D + S+     +
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 350 VWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                L++  C   L   G++ + R+M    V  +  T N ++  + ++   +  + L  
Sbjct: 388 RTFNILINGYCKANLIDDGLE-LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           E+ +R V+PDIV+  IL D      +   ALE++++I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 25/312 (8%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM K      +  F++  +I    +EG + EA    +EM    + P    Y S+I G+ K
Sbjct: 307 DMIKRKITPDVVAFSA--LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             + ++A   L+ M      P   T++ LI  Y K  + D+     + M L G   D +T
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN LIQ F   G L+  +  ++ M+++R+     +   +LD   + G  +K  + ++++ 
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMF------SRLDDLGDDLASRI--GRTELVWCLRLLSH 358
            S+  L         ++ I N +       S++DD  D   S    G    V    ++  
Sbjct: 485 KSKMEL---------DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535

Query: 359 ACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
              L  +G     D + R+ME      N  T NI++ A+L   D      L+ E+     
Sbjct: 536 G--LCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF 593

Query: 415 KPDIVTIGILYD 426
             D  T+ ++ D
Sbjct: 594 SVDASTVKMVVD 605



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 118/320 (36%), Gaps = 38/320 (11%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     +R++Q   V D+ K +E   I  N +    +I   C    +  A  A  ++   
Sbjct: 77  RLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL 136

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    ++++I+G    G+ +EAL  ++ M EM   P   T + L+          + 
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   G  P+ +TY  +++    +G         + M  +++ L +     I+D 
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRT 347
               G LD     +  +       K D++  +    I+ + ++ R DD            
Sbjct: 257 LCKDGSLDNAFNLFNEM--EIKGFKADII--IYTTLIRGFCYAGRWDDGA---------- 302

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                                 ++R+M   K+  +V   + ++  ++K    +    L  
Sbjct: 303 ---------------------KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341

Query: 408 ELPTRHVKPDIVTIGILYDA 427
           E+  R + PD VT   L D 
Sbjct: 342 EMIQRGISPDTVTYTSLIDG 361


>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
          Length = 450

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 3/224 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I       R  +IP + D    +   + N      II    + G++EE   A   M
Sbjct: 163 FSVLINCCSKLRRFDRIPAILDEMSYL-GLQCNAVIHNAIIDGYGKAGMLEEMENALTSM 221

Query: 166 -EGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            E     P +   NSII  Y   G + +E   + +E + M + P + T++ +I++YG  K
Sbjct: 222 LEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAK 281

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           M+D++   LK MK    SP  +T+N++I+ F  AG +++ME  ++ M  + +     T  
Sbjct: 282 MHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYC 341

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++++ Y   G LDK+    ++  N+   L       + + Y K+
Sbjct: 342 SLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 134/307 (43%), Gaps = 21/307 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++G     GL+++A+   ++M+G A  KP    ++ +I+  SK+ +F+     L+EM  +
Sbjct: 130 LVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYL 189

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAG-LLK 261
            L   +  ++ +I  YGK  M +E++  L  M  DG S PD  T N +I  +   G  + 
Sbjct: 190 GLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIH 249

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLV- 317
            ME  Y       +   + T   ++ +Y N  M DKM    K+ K+   S T +  +++ 
Sbjct: 250 EMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIII 309

Query: 318 ---RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC--LRLLSHACLLSHRGIDSVVR 372
               +   +    Y F  +   G      +    + +C  +   S A  L    +  ++R
Sbjct: 310 ESFGRAGNIEKMEYYFRLMKIQG------VKPNPITYCSLVNGYSKAGFLDK--VPGIIR 361

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI-G 431
           + E+  V  +    N ++ AY K  D K +  +L  +  +  KPD VT   +  A  + G
Sbjct: 362 QTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHG 421

Query: 432 FDGTGAL 438
            D    L
Sbjct: 422 MDEAANL 428


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+ AVR F +++   L P+L  YN++I GYSK+     AL  + EM+E  
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++    TY  LI A+ +    D+      +M+  G  PD  TY++LI      G +K   
Sbjct: 399 IARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEAS 458

Query: 265 GTYKSMLTKRMHLRSSTMV 283
             +KS+    MHL+ ++++
Sbjct: 459 KPFKSL--GEMHLQPNSVI 475



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F M++N+ +S I  N +    +I   C +G++++A + F EM    +   +  YN +I G
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             +  KF EA+  ++++ ++ LSP   TY+ LI  +      D        +K  G SP 
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPT 367

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            +TYN LI  ++    L       K M  + +     T   ++DA+      DK
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDK 421



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 118/302 (39%), Gaps = 42/302 (13%)

Query: 131 NIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           N+ KS++  N ++   +I   CE G      R    +E F L P++ IY ++I G  K G
Sbjct: 148 NVLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNG 207

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
               A     +M  + L P   TY  L+  + K  +  E     + M   G  P+   YN
Sbjct: 208 DVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYN 267

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            LI E+   G++ +    +  M  K +         ++   +  G L + +KF + +   
Sbjct: 268 CLISEYCNDGMVDKAFKVFAEMREKGI------ACGVMTYNILIGGLCRGKKFGEAV--- 318

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
           +   K + V     +   N + +   D+G                             +D
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVGK----------------------------MD 350

Query: 369 SVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
           + VR   +++S+ +   + T N ++  Y K+++      L+ E+  R +    VT  IL 
Sbjct: 351 TAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILI 410

Query: 426 DA 427
           DA
Sbjct: 411 DA 412



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +M   +EKS +  + +    +I   C  G M+EA + F+ +    L+P+  IYN++IHGY
Sbjct: 424 EMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGY 483

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G    AL  LNEM    + P   ++   +    + + + E ++ L  M   G  P  
Sbjct: 484 CKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSV 543

Query: 245 ITYNLL 250
             Y ++
Sbjct: 544 SLYKMV 549


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           ++R+I +  + ++ + +  +  +N+  ++G LC+ G + +A   F  MEG  + PS   Y
Sbjct: 82  KARRISRAIEFFETMPEPDVVTYNT--LLGGLCKNGRVAQACSLFGSMEGAGITPSDVTY 139

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++I  + K+ +F  A   L  M     SP   +Y  +I    K +  D+     + MKL
Sbjct: 140 TTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKL 199

Query: 238 DGCSPDHITYNLLI 251
            GC PD +TYN LI
Sbjct: 200 AGCKPDRVTYNTLI 213



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+   +++A + F+EM+    KP    YN++IHG     + +EA   L  M E  
Sbjct: 177 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             P   T+  LI+         E  +  + M   GC+PD +T+ +L+ +  
Sbjct: 237 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 287



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 5/148 (3%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A++  L+ + RS QI  VF    + +  + N  +   ++  LC  G +++A     EM  
Sbjct: 5   ALLDLLERARRSEQIVVVFRRIFS-QDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P +  YN +I    K  + + A+ F   M E    P   TY+ L+    K     +
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQ 119

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFA 255
                  M+  G +P  +TY  LI  F 
Sbjct: 120 ACSLFGSMEGAGITPSDVTYTTLIDVFC 147



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG+   A R F+ M    ++P +  YN ++ G+ K  + + A   +  M +  L P   
Sbjct: 358 KEGM--RAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIV 415

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           TY+ L+  + +    + I   L  M   G  PD  T++ L+
Sbjct: 416 TYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLV 456


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 132/317 (41%), Gaps = 11/317 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  +N+  II  LC++ L+ EA+  F EM    + P +  Y+SI+HG+  +G+ NEA
Sbjct: 77  KPNVVAYNT--IIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEA 134

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
                +M E N+ P   T+  LI    K +M  E  +  + M   G  PD  TYN L+  
Sbjct: 135 TSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDG 194

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +     +   +  +  M  K       +   +++ +   G +D+ +     +  S   L 
Sbjct: 195 YCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM--SHKSLT 252

Query: 314 EDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID--- 368
            D+     L   + +        +L  ++ S      L+    +L   C   H  +D   
Sbjct: 253 PDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLC--KHGHLDEAF 310

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
            +++ M+ +K+  N+    I++         +  R L S L  + ++P +VT  ++    
Sbjct: 311 ELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370

Query: 429 RIGFDGTGALEMWKRIG 445
             G     A E+++ + 
Sbjct: 371 LKGGLSNEACELFREMA 387



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 135/302 (44%), Gaps = 29/302 (9%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  ++  LC +  + +AV+ F EM     +P +  Y++II+G  K+G    AL  L +
Sbjct: 13  FNT--LLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKK 70

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M+E    P    Y+ +I +  K ++  E +D   +M+K +G  PD  TY+ ++  F   G
Sbjct: 71  MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK-EGIPPDVFTYSSILHGFCNLG 129

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            +      +K M+ + +     T   ++D               KR+++    + E +  
Sbjct: 130 RVNEATSLFKQMVERNVIPNKVTFTILIDGLCK-----------KRMISEAWLVFETMTE 178

Query: 319 KLAE--VYIKNYMF------SRLDDLGD--DLASRIGRTELVWCLRLLSHACLLSHRGID 368
           K  E  VY  N +       S++D+     ++  R G    V    +L +    S R ID
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGR-ID 237

Query: 369 ---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
               ++ EM    +  ++ T + ++  + ++   +  + LL E+ +  + P+++T  I+ 
Sbjct: 238 EAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVL 297

Query: 426 DA 427
           D 
Sbjct: 298 DG 299



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 1/258 (0%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L+P+L  +N+++ G     K  +A+   +EM +M   P   TY  +I    K      
Sbjct: 4   LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               LK M+  GC P+ + YN +I       L+      +  M+ + +     T  +IL 
Sbjct: 64  ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
            + N G +++    +K+++       +     L +   K  M S    + + +  +    
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 348 ELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           ++     L+   C  S       +   M+      NV + NI++  + K       + LL
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 407 SELPTRHVKPDIVTIGIL 424
           +E+  + + PDI T   L
Sbjct: 244 AEMSHKSLTPDIFTYSTL 261



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++EA    + M+   ++P++ IY  +I G    GK   A    + +    + P 
Sbjct: 300 LCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPT 359

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I    K  + +E     + M ++GC P+  TYN++IQ F   G         +
Sbjct: 360 VVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIE 419

Query: 269 SMLTKRMHLRSSTMVAILD 287
            M+ K     SST   + D
Sbjct: 420 EMVGKGFSADSSTFRMLSD 438



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++   C+ G  +EA    +EM  + L P+L  Y+ ++ G  K G  +EA   L  
Sbjct: 256 FTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKA 315

Query: 200 MKEMNLSPQSDTYDGLIQA---YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           M+E  + P    Y  LI+    +GK +   E+      + + G  P  +TY ++I     
Sbjct: 316 MQESKIEPNIFIYTILIEGMCTFGKLEAAREL---FSNLFVKGIQPTVVTYTVMISGLLK 372

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            GL       ++ M        S T   I+  ++  G
Sbjct: 373 GGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG 409


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 150/346 (43%), Gaps = 24/346 (6%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           N  +I+ +L +E L+ +A   +  ME F +KP++  YN+++  Y K G+ ++AL  L+EM
Sbjct: 182 NCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEM 241

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           +E    P   TY+ L+    K    ++    ++ M   G +    TYN LI  F   GL 
Sbjct: 242 QERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLF 301

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLV-- 317
                  + M+ +R     ST   ++     +  +  +   +  +L S+ TP   D+V  
Sbjct: 302 VEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTP---DIVSF 358

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
             L   Y +    S    L D+L  R     ++    L+   C+  +  +D+ +R   EM
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY--LDAALRLKKEM 416

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG--- 431
               +  ++ T  I++    K+      R   +E+ ++ +KPD       Y+ R +G   
Sbjct: 417 TDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD----RFAYNTRIVGEMK 472

Query: 432 -FDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCE 473
             D + A  M + +   GF    +  N    V A+  +G+F   C+
Sbjct: 473 IADTSVAFSMQEEMLAAGFPPDVITYNV--FVHALCQQGNFEEACD 516



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  A   F EM    LKP    YN+ I G  KI   + A     EM      P   TY
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITY 498

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           +  + A  +   ++E    L+ M  DG  PDH+TY  +I  F   G L++    +  ML+
Sbjct: 499 NVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           K +     T   ++ A+    MLD    ++ ++L    P
Sbjct: 559 KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G  EEA    + M    L P    Y SII+G+ K G   +A    NEM    ++P 
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI A+   +M D   M    M       + ITYN +I       + +RM+  YK
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLC---MTRRMDEAYK 621

Query: 269 ---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
               M  K +     +   +++   N G  ++  + Y+ +L+ +
Sbjct: 622 YFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRK 665



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 180/453 (39%), Gaps = 46/453 (10%)

Query: 1   MESVVSLHLHN------NNNTHCKVRLNKNKKNKLTHD--------RVFFAKTLIRKPIS 46
           ME VVS  +H         +  C +  +K  +N L  D        RV   + L+ K  +
Sbjct: 142 MERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKN 201

Query: 47  CCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHF 106
              +     +      + T+L +SY +   ++  ++ L++        +Q  G +  D  
Sbjct: 202 VYGMMEQFGIKPTVVTYNTML-DSYCKEGRVDQALELLSE--------MQERGCYPNDVT 252

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + V+  +   S+  ++ Q   + + +  S +N   +    +I   C++GL  EA    +E
Sbjct: 253 YNVL--VNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+L  YN++++G  K  +     L  ++M +   +P   +++ L+  Y +   
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E  +    +K     P  ITYN LI      G L       K M  + +     T   
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL----VRKLAEVYIKN--YMFSRLDDLGD 338
           +++     G +     F+  +L+    LK D      R + E+ I +    FS  +++  
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSK--GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEM-- 486

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYL 394
            LA+  G    V    +  HA  L  +G       ++  M S  +  +  T   I+  ++
Sbjct: 487 -LAA--GFPPDVITYNVFVHA--LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           K    +  R + +E+ ++ V P +VT  +L  A
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            II    + G + +A   F EM    + PS+  Y  +IH ++     + A ++ ++M E 
Sbjct: 535 SIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEK 594

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           ++     TY+ +I      +  DE       M+  G  P+  +Y +LI E    G  +  
Sbjct: 595 SVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEA 654

Query: 264 EGTYKSMLTKRMHLRSST 281
              Y+ ML +++   S T
Sbjct: 655 LRLYREMLDRKIQPDSFT 672



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 63/334 (18%), Positives = 127/334 (38%), Gaps = 18/334 (5%)

Query: 100 DWTKDHFWAVIR----FLKNSSRSRQIPQV---FDMWKNIEKS-RINEFNSQKIIGMLCE 151
           +W  D F AVI     F++     R  P+V   F  W   +   + +EF    I+ +L  
Sbjct: 72  NWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVG 131

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
             LM  A    + +  F +   +++   +I G+         LL  ++M    L P    
Sbjct: 132 NDLMHAAYWVMERVVSFEMHGVVDV---LIAGHVX------CLLVFDKMIRNGLLPDVKN 182

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
            + +++      +  +      MM+  G  P  +TYN ++  +   G + +       M 
Sbjct: 183 CNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQ 242

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            +  +    T   +++     G L++ +   + +LNS   +       L   + +  +F 
Sbjct: 243 ERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFV 302

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHAC-LLSHRGIDSVVREMESAKVRWNVTTANIIL 390
              DL +++ +R     L     L+   C  +   G+     +M  +K   ++ + N +L
Sbjct: 303 EAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLL 362

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             Y +        +L  EL  R + P ++T   L
Sbjct: 363 YGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396



 Score = 38.5 bits (88), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 130 KNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           K +EKS   N      II  LC    M+EA + F EME   + P+   Y  +I+    +G
Sbjct: 590 KMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMG 649

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            + EAL    EM +  + P S T+   ++
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLK 678


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           ++R+I +  + ++ + +  +  +N+  ++G LC+ G + +A   F  MEG  + PS   Y
Sbjct: 57  KARRISRAIEFFETMPEPDVVTYNT--LLGGLCKNGRVAQACSLFGSMEGAGITPSDVTY 114

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++I  + K+ +F  A   L  M     SP   +Y  +I    K +  D+     + MKL
Sbjct: 115 TTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKL 174

Query: 238 DGCSPDHITYNLLI 251
            GC PD +TYN LI
Sbjct: 175 AGCKPDRVTYNTLI 188



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+   +++A + F+EM+    KP    YN++IHG     + +EA   L  M E +
Sbjct: 152 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENS 211

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             P   T+  LI+         E  +  + M   GC+PD +T+ +L+ +  
Sbjct: 212 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 262



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +  + N  +   ++  LC  G +++A     EM    L P +  YN +I    K  + + 
Sbjct: 4   QDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISR 63

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A+ F   M E    P   TY+ L+    K     +       M+  G +P  +TY  LI 
Sbjct: 64  AIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLID 119

Query: 253 EFA 255
            F 
Sbjct: 120 VFC 122



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG+   A R F+ M    ++P +  YN ++ G+ K  + + A   +  M +  L P   
Sbjct: 333 KEGM--RAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIV 390

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           TY+ L+  + +    + I   L  M   G  PD  T++ L+     AGL +
Sbjct: 391 TYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLV-----AGLFR 436


>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
 gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 501

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 120/315 (38%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF M K        E    K++ +L   G    A   F EM     +P+ E+Y ++I  
Sbjct: 132 QVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAA 191

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  ++A   L +MK   +  P   TY  +I+A      +D +D   K M     +P
Sbjct: 192 YCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAP 251

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME    +ML          TM  IL  + N G ++ MEK+
Sbjct: 252 NTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKW 311

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +   +  L   Y K  M+ ++                            
Sbjct: 312 YEKFRGYGIEPETRTLNILIGAYGKKRMYDKM---------------------------- 343

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+    D K++    +++    +KPD  T 
Sbjct: 344 ------SAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTF 397

Query: 422 GILYDARRIGFDGTG 436
             L +    GF   G
Sbjct: 398 CCLIN----GFGNAG 408



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP +   N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++  
Sbjct: 286 KPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSA 345

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            ++ M+         T+N +I+ FA AG  K ME T+  M  + M   + T   +++ + 
Sbjct: 346 VMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFG 405

Query: 291 NFGMLDK---MEKFYKRL 305
           N G+  K   M K  +RL
Sbjct: 406 NAGLFHKVVGMVKLAERL 423



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   + +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 295 ILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLA 354

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + T++ +I+A+        ++     M+ +G  PD  T+  LI  F  AGL  ++ 
Sbjct: 355 FPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVV 414

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRL 305
           G  K  L +R+ +   T    A+L   +    L +ME+ + R+
Sbjct: 415 GMVK--LAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRM 455



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 2/124 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    + G  +     F +M    +KP  + +  +I+G+   G F++ +  +  
Sbjct: 362 FNN--VIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVVGMVKL 419

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            + + +   +  ++ ++    K +   E++     MK   C PD  TY++L+  +   G+
Sbjct: 420 AERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRMKQIQCIPDATTYSILVGAYRKEGM 479

Query: 260 LKRM 263
             ++
Sbjct: 480 TDKI 483


>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 163/394 (41%), Gaps = 61/394 (15%)

Query: 124 QVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEE---AVRAFQEMEGFALKPSLEIYNS 179
           QVF+ WK   KS++  E N ++   M+   G + +   A   F EME   +K +   +N+
Sbjct: 1   QVFN-WK---KSKLGWEANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNA 56

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +IH Y +  + ++AL    +MK  N   P   TY+ LI  Y +    +E+       K  
Sbjct: 57  LIHSYGRNNEAHKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEA 116

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G SPD  TYN LI  +  AG L +ME T+  +          T  A +  Y     ++KM
Sbjct: 117 GFSPDRHTYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKM 176

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL--------GDDLASRIGRTELV 350
           E  +  +  +  P+   +   L EVY +   F ++++         G    SR+      
Sbjct: 177 EAVFSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIMDVTPGVQYGSRV------ 230

Query: 351 WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
                  H+ ++      + + EME+A  R                  F++ R + S   
Sbjct: 231 -------HSMVIESYADANKLDEMEAAISRM-----------------FQNKR-MFSSPK 265

Query: 411 TRHVKPDIVTIGILYDARRIGFDGTGA--LEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
           + H         ++    R G  G  A  +E+ K  G++ ++   N   ++++ YGKG  
Sbjct: 266 SLHA--------LIMAYSRAGEYGRLAKTMEVVKGAGWILQSSIYN---ILISEYGKGGH 314

Query: 469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           L   E+V+  +   S      T+Q +ID    +N
Sbjct: 315 LDRMEQVFREMMDASCPPSFETFQYMIDAYEANN 348



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 124/305 (40%), Gaps = 23/305 (7%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           T   F A+I     ++ + +  Q+F+  K     +        +I M    G  EE  + 
Sbjct: 50  TAVSFNALIHSYGRNNEAHKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKL 109

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F + +     P    YN++I GY + G+ ++     NE++         TY+  I  Y +
Sbjct: 110 FLDCKEAGFSPDRHTYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYAR 169

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRSS 280
               ++++     M+  G   + +   +LI+ ++     ++ME   K M +T  +   S 
Sbjct: 170 ANAVNKMEAVFSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIMDVTPGVQYGSR 229

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
               ++++Y +   LD+ME    R+  ++      +      ++     +SR  + G   
Sbjct: 230 VHSMVIESYADANKLDEMEAAISRMFQNKR-----MFSSPKSLHALIMAYSRAGEYG--- 281

Query: 341 ASRIGRT-ELV----WCLRLLSHACLLSHRG-------IDSVVREMESAKVRWNVTTANI 388
             R+ +T E+V    W L+   +  L+S  G       ++ V REM  A    +  T   
Sbjct: 282 --RLAKTMEVVKGAGWILQSSIYNILISEYGKGGHLDRMEQVFREMMDASCPPSFETFQY 339

Query: 389 ILLAY 393
           ++ AY
Sbjct: 340 MIDAY 344



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 37/223 (16%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G + +    F E++    K  +  YN+ I GY++    N+     + M+   +   +   
Sbjct: 136 GQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVG 195

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + LI+ Y + K +++++  LK+M +  G       ++++I+ +A A  L  ME     M 
Sbjct: 196 EILIEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSMVIESYADANKLDEMEAAISRMF 255

Query: 272 -TKRMH-----------------------------------LRSSTMVAILDAYMNFGML 295
             KRM                                    L+SS    ++  Y   G L
Sbjct: 256 QNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWILQSSIYNILISEYGKGGHL 315

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           D+ME+ ++ ++++  P   +  + + + Y  N   + +D + D
Sbjct: 316 DRMEQVFREMMDASCPPSFETFQYMIDAYEANNNEAEVDRILD 358



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G+ L+ S  IYN +I  Y K G  +       EM + +  P  +T+  +I AY       
Sbjct: 294 GWILQSS--IYNILISEYGKGGHLDRMEQVFREMMDASCPPSFETFQYMIDAYEANNNEA 351

Query: 227 EIDMCLKMMKLDGCSP 242
           E+D  L +M+  GC P
Sbjct: 352 EVDRILDLMRKAGCEP 367


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG ++ A     EM    L+P++  YNSI++G  K G   EA+  + E +   
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+  + TY  L+ AY K    D+    LK M   G  P  +T+N+L+  F   G+L+  E
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
                ML K +   ++T  +++  Y
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQY 606



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)

Query: 128 MWKNIE-----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +WK IE       + N +    IIG+LC    + EA  AF EM    + P   +Y ++I 
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G+ K G    A  F  EM   +++P   TY  +I  + +     E       M   G  P
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 419

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D +T+  LI  +  AG +K     +  M+         T   ++D     G LD      
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS----- 474

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                       +L+ ++ ++ ++  +F+  + + + L       E V            
Sbjct: 475 ----------ANELLHEMWKIGLQPNIFT-YNSIVNGLCKSGNIEEAV------------ 511

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                  +V E E+A +  +  T   ++ AY K  +    + +L E+  + ++P IVT  
Sbjct: 512 ------KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

Query: 423 ILYDARRIGFDGTGALE 439
           +L +    GF   G LE
Sbjct: 566 VLMN----GFCLHGMLE 578



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +MWK   +  I  +NS  I+  LC+ G +EEAV+   E E   L      Y +++  Y K
Sbjct: 481 EMWKIGLQPNIFTYNS--IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+ ++A   L EM    L P   T++ L+  +  + M ++ +  L  M   G +P+  T
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +N L++++     LK     YK M ++
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSR 625



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 1/289 (0%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++I   C+ G M++A R    M      P++  Y ++I G  K G  + A   L+EM ++
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            L P   TY+ ++    K    +E    +   +  G + D +TY  L+  +  +G + + 
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           +   K ML K +     T   +++ +   GML+  EK    +L             L + 
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 324 YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y           +  D+ SR +G     +   +  H    + +    + +EM+      +
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           V+T ++++  +LK K F   R +  ++    +  D        D +  G
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 714



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 34/273 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G M EA + F EM    L+P    +  +I+GY K G   +A    N M +  
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY  LI    K    D  +  L  M   G  P+  TYN ++     +G ++   
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                     ++  + T   ++DAY   G +DK ++  K +L     L+  +V     V 
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVT--FNVL 567

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           +  +    + + G+ L        L W L           +GI              N T
Sbjct: 568 MNGFCLHGMLEDGEKL--------LNWML----------AKGIAP------------NAT 597

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           T N ++  Y    + K    +  ++ +R V PD
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 630



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 125/315 (39%), Gaps = 31/315 (9%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGL 215
           A+  F+E     +  ++  YN +IH   ++G+  EA  LL L E+K    +P   +Y  +
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK--GYTPDVISYSTV 287

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  Y ++   D++   +++MK  G  P+   Y  +I        L   E  +  M+ + +
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNYMFSRL 333
              +     ++D +   G +    KF+   ++SR  TP          +V     + S  
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITP----------DVLTYTAIISGF 396

Query: 334 DDLGD---------DLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
             +GD         ++  +    + V    L++  C   H +    V   M  A    NV
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T   ++    K  D      LL E+    ++P+I T    Y++   G   +G +E   +
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT----YNSIVNGLCKSGNIEEAVK 512

Query: 444 IGFLFKTVEINTDPL 458
           +   F+   +N D +
Sbjct: 513 LVGEFEAAGLNADTV 527



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++   C    ++ A   +++M    + P  + Y +++ G+ K     EA     E
Sbjct: 599 FNS--LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           MK    S    TY  LI+ + K K + E       M+ +G + D   ++  
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   M+EA   FQEM+G     S+  Y+ +I G+ K  KF EA    ++M+   L+   
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701

Query: 210 DTYDGLIQAYGKYKMYDEI 228
           + +D       K K  D I
Sbjct: 702 EIFDFFSDTKYKGKRPDTI 720


>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Cucumis sativus]
          Length = 1062

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 3/222 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+   I  + E G +  A R ++ M    + PS++ YN++I  Y +  K ++A+   N 
Sbjct: 776 FNT--FIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMFNA 833

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +   LSP    Y  LI  YGK     E  +  K M  +G  P  ++YN+++  +A AGL
Sbjct: 834 ARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGL 893

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            +  E   K+M    +   S T  +++ AY       + EK    +     P        
Sbjct: 894 HEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDL 953

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           L     K  M  + + + D+L +  G +  V C R L    L
Sbjct: 954 LLSALAKAGMIRKAERVYDELQT-AGLSPDVTCNRTLMRGYL 994



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 117  SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             R R++ +  +M+     S +  +E     +I    + G   EA   F+EM    +KP +
Sbjct: 819  GRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGM 878

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
              YN +++ Y+  G   E    L  M++  + P S TY  LI+AY +   Y E +  +  
Sbjct: 879  VSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINS 938

Query: 235  MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
            M+  G       Y+LL+   A AG++++ E  Y  + T  +    +    ++  Y+++G 
Sbjct: 939  MQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYLDYGY 998

Query: 295  LDKMEKFYK 303
            + +  KF++
Sbjct: 999  VREGIKFFE 1007



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 108 AVIRFLKNSSRSRQI-PQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           AV  F+ +S + + +  +V ++W  + +  +  ++F    +I  L +EG  EEA + F E
Sbjct: 260 AVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFSDFTYTVVINSLVKEGHSEEAFKVFNE 319

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     P    YN +I    K    +E L    +M++ ++ P + T   L+  + K   
Sbjct: 320 MKNCGFIPEEVTYNLLISLSIKRENSDEVLRLYKDMRDKDIVPSNYTCSSLLTLFYKNGD 379

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y +       M+      D + Y LLI+ +   GL +    T++ M
Sbjct: 380 YSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGLYEDAHKTFEEM 425



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 4/228 (1%)

Query: 177  YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
            +N+ I    + GK + A      M  + + P   TY+ +I  YG+ +  D+        +
Sbjct: 776  FNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMFNAAR 835

Query: 237  LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
              G SPD   Y  LI  +  AG        +K ML + +     +   +++ Y N G+ +
Sbjct: 836  SSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHE 895

Query: 297  KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRL 355
            + E   K +              L   Y ++  +S  + + + +  + I  T   + L L
Sbjct: 896  ETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLL 955

Query: 356  LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
             + A     R  + V  E+++A +  +VT    ++  YL   D+ ++R
Sbjct: 956  SALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYL---DYGYVR 1000



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V  ++K++    I  + +    ++ +  + G   +A+  F EME   +     IY  +I
Sbjct: 347 EVLRLYKDMRDKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLI 406

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             Y K+G + +A     EM+++ L     +Y  + Q +   + +++    +++MK     
Sbjct: 407 RIYGKLGLYEDAHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNIW 466

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                Y + +Q +     ++  E T+++ L+K     + + + IL+ Y+   +++K + F
Sbjct: 467 LSRFAYIVSLQCYVMKEDIRSAESTFQA-LSKTGLPDARSCIYILNLYLKLDLVNKAKDF 525

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIK 326
              +        E+L + +  VY K
Sbjct: 526 IAHIRKDGVVFDEELYKLVLRVYCK 550


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 131/313 (41%), Gaps = 22/313 (7%)

Query: 133 EKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           E SRI  N      II  L ++G   +A   F EM+   + P+L  YN +I+G+   G++
Sbjct: 240 EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRW 299

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           +EA   L EM E  +SP   T+  LI A  K   + E +     M   G  P+ ITYN +
Sbjct: 300 SEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSM 359

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLL 306
           I  F+    L   E  +  M TK       T   ++D Y     +D     + +  +R L
Sbjct: 360 IDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-R 365
            + T     L+    ++   N   + LD L + ++S +    +V C  LL   C     +
Sbjct: 420 VANTITYTTLIHGFCQLGNLN---AALDLLQEMISSGVC-PNVVTCNTLLDGLCNNGKLK 475

Query: 366 GIDSVVREMESAK-----------VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
               + + M+ +K           V  +V T NI++   +    F     L  E+P R +
Sbjct: 476 DALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGL 535

Query: 415 KPDIVTIGILYDA 427
            PD +T   + D 
Sbjct: 536 VPDTITYNSVIDG 548



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 23/305 (7%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N+     I+  +C+ G    A+   ++ME  + +KP++ IY++II G  K G+  +A   
Sbjct: 211 NQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNL 270

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM+E  +SP   TY+ +I  +     + E    L+ M     SPD +T+++LI     
Sbjct: 271 FSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK-FYKRLLNSRTPLKED 315
            G     E  Y  ML + +   + T  +++D +     LD  E+ FY       +P   D
Sbjct: 331 EGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSP---D 387

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW----CLRLLSHACLLSH-RGIDSV 370
           ++     + I  Y  ++  D G  L   + R  LV        L+   C L +      +
Sbjct: 388 VIT--FSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDL 445

Query: 371 VREMESAKVRWNVTTANIILLAYL---KMKD----FKHLRVLLSELPTRH----VKPDIV 419
           ++EM S+ V  NV T N +L       K+KD    FK ++    +L   H    V+PD+ 
Sbjct: 446 LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQ 505

Query: 420 TIGIL 424
           T  IL
Sbjct: 506 TYNIL 510



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 157/398 (39%), Gaps = 21/398 (5%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ +    +  I K  +  F +  ++  LC EG + EAV     M    L+P+   Y +I
Sbjct: 161 RVSEALHFFHQICKPNVIAFTT--LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 218

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + G  K+G    AL  L +M+E++ + P    Y  +I    K     +       M+  G
Sbjct: 219 VDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKG 278

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            SP+  TYN +I  F  +G     +   + M  ++M     T   +++A +  G   + E
Sbjct: 279 ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAE 338

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
           + Y  +L             + + + K       + +   +A++    +++    L+   
Sbjct: 339 ELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGY 398

Query: 360 CLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           C    + +D    ++ EM    +  N  T   ++  + ++ +      LL E+ +  V P
Sbjct: 399 C--GAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCP 456

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVEINTDP---LVLAVYG 464
           ++VT   L D          ALEM+K +            F  VE +      L+  +  
Sbjct: 457 NVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLIN 516

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +G F    EE+Y  +          TY ++ID + K +
Sbjct: 517 EGKF-SEAEELYEEMPHRGLVPDTITYNSVIDGLCKQS 553



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-----------KPSLEIYNSIIHGYSK 186
           N      ++  LC  G +++A+  F+ M+   +           +P ++ YN +I G   
Sbjct: 457 NVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLIN 516

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            GKF+EA     EM    L P + TY+ +I    K    DE       M   G SPD +T
Sbjct: 517 EGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVT 576

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +  LI  +   G +      +  M  + +   + T   ++  +   G ++     ++ ++
Sbjct: 577 FTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMI 636

Query: 307 NS 308
           +S
Sbjct: 637 SS 638



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 155/373 (41%), Gaps = 66/373 (17%)

Query: 118 RSRQIPQVFDMWK-------------------NIEKSRI--NEFNSQKIIGMLCEEGLME 156
           RSR +P V D  K                    +E  RI  N ++   +I   C    + 
Sbjct: 69  RSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLP 128

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            A+  F ++      PSL  +++++HG     + +EAL F +++ + N+   +   +GL 
Sbjct: 129 FALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIAFTTLMNGLC 188

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           +   + ++ + + +  +M++ DG  P+ ITY  ++      G+ K  +      L ++M 
Sbjct: 189 R---EGRVVEAVALLDRMVE-DGLQPNQITYGTIVD-----GMCKMGDTVSALNLLRKME 239

Query: 277 --LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
              R    V I  A     ++D + K      + R    ++L  ++ E  I   +F+   
Sbjct: 240 EVSRIKPNVVIYSA-----IIDGLWK------DGRQTDAQNLFSEMQEKGISPNLFTYNC 288

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
            +    +S  GR    W     S A          ++REM   K+  +V T ++++ A +
Sbjct: 289 MINGFCSS--GR----W-----SEA--------QRLLREMFERKMSPDVVTFSVLINALV 329

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN 454
           K   F     L +E+  R + P+ +T    Y++   GF     L+  +R+ +L  T   +
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTIT----YNSMIDGFSKQNRLDAAERMFYLMATKGCS 385

Query: 455 TDPLVLAVYGKGH 467
            D +  ++   G+
Sbjct: 386 PDVITFSILIDGY 398


>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
          Length = 396

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 5/175 (2%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL---EIYNSIIHGYSKIGKFNEA 193
           I+ +    +I     +G ME A    +E E  A  PSL    +Y S+I GY + G  +  
Sbjct: 114 IDSYIVSILIDSFVNKGDMERAEAILREKE--AEDPSLLSSHLYASLIKGYGRKGMIDRC 171

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +  + EMK   L   +  Y+ LI A  + K  D+    L+ M+  G  P  +TY LLI E
Sbjct: 172 MALMEEMKSKQLKVSAVPYNTLISALLESKRMDQAQKTLEQMEEAGIQPSVVTYTLLIHE 231

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           F+ AG + + +  +++M    +   +    A+LD Y + G   +M++ + +L+ S
Sbjct: 232 FSSAGNVAQAQAAFETMERSGIFPDTGAYNALLDGYASLGQTARMKEIFWKLMQS 286



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 110/274 (40%), Gaps = 8/274 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A      M+   + P++  Y + I  Y K+G    A    + M    + P   T+  L
Sbjct: 28  DQAYSYLTRMKSDGIMPNVWAYTTCIDAYCKVGDMEMAENIKSMMISSGIEPTLATFTTL 87

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           ++ Y KY  ++ ++  L++M+ +    D    ++LI  F   G ++R E   +    +  
Sbjct: 88  MKGYAKYGNHEALEHYLEIMQQENIMIDSYIVSILIDSFVNKGDMERAEAILREKEAEDP 147

Query: 276 HLRSSTMVA-ILDAYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
            L SS + A ++  Y   GM+D+    ME+   + L         L+  L E    +   
Sbjct: 148 SLLSSHLYASLIKGYGRKGMIDRCMALMEEMKSKQLKVSAVPYNTLISALLESKRMDQAQ 207

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             L+ + +   + I  + + + L +   +   +     +    ME + +  +    N +L
Sbjct: 208 KTLEQMEE---AGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYNALL 264

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             Y  +     ++ +  +L     KP I T  I+
Sbjct: 265 DGYASLGQTARMKEIFWKLMQSANKPSIETYSIM 298



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 67/166 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK------- 189
           I+EF+S          G + +A  AF+ ME   + P    YN+++ GY+ +G+       
Sbjct: 229 IHEFSSA---------GNVAQAQAAFETMERSGIFPDTGAYNALLDGYASLGQTARMKEI 279

Query: 190 -------------------------------------FNEALLFLNEMKEMNLSPQSDTY 212
                                                  E + FL++++E NL P +  +
Sbjct: 280 FWKLMQSANKPSIETYSIMIKCLLHSDASDDAKKSENLRECMSFLDQIREENLKPSASFF 339

Query: 213 DGLIQA---YGK----YKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + LI A   +GK    ++MY+       MM+L+  +PD IT+N L+
Sbjct: 340 NSLISACTLFGKPQDTFRMYE-------MMQLEDVAPDMITFNALM 378


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 5/202 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + A+IR L  + +   IPQ   ++K +       +      +I  L + G +  AVR F+
Sbjct: 375 YTALIRELLQTGK---IPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 431

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME   L P+  +Y+++IHG  K  K + AL  L +MK+   +P + TY+ LI    K  
Sbjct: 432 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 491

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             +        M   GC PD  TYN+LI  F  AG      G +  M + R      T  
Sbjct: 492 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYG 551

Query: 284 AILDAYMNFGMLDKMEKFYKRL 305
           A++        L K   +++ +
Sbjct: 552 ALISGLCKRRQLTKASLYFQHM 573



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 107/273 (39%), Gaps = 40/273 (14%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEAV   +++      P++  YN++++G  K+G+  EA+  L ++ +   +P   TY  
Sbjct: 283 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 342

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI   GK K   E     K M L G + D + Y  LI+E    G + +    YK+M +  
Sbjct: 343 LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 402

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T+  ++D     G +    + +K +            R LA             
Sbjct: 403 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM----------EARGLAP------------ 440

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILL 391
                        E+V+    L H  L   R +D  +    +M+ A    +  T NI++ 
Sbjct: 441 ------------NEVVY--SALIHG-LCKARKMDCALEMLAQMKKAFCTPDTITYNILID 485

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              K  D +  R    E+     KPD+ T  IL
Sbjct: 486 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 518



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 40/273 (14%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEAV   +++      P++  YN++++G  K+G+  EA+  L ++ +   +P   TY  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI   GK K   E     K M L G + D + Y  LI+E    G + +    YK+M +  
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
                 T+  ++D     G +    + +K +            R LA             
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM----------EARGLAP------------ 159

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILL 391
                        E+V+    L H  L   R +D  +    +M+ A    +  T N+++ 
Sbjct: 160 ------------NEVVY--SALIHG-LCKARKMDCALEMLAQMKKAFCTPDTITYNVLID 204

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              K  D +  R    E+     KPD+ T  IL
Sbjct: 205 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++ +I     ++K++E   +  NE     +I  LC+   M+ A+    +M+     P  
Sbjct: 418 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 477

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN +I G  K G    A  F +EM E    P   TY+ LI  + K    D        
Sbjct: 478 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 537

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           M    CS + +TY  LI     +GL KR + T  S+  + M  R 
Sbjct: 538 MSSSRCSANVVTYGALI-----SGLCKRRQLTKASLYFQHMKERG 577



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + +A   ++ M      P +   +++I G SK G+   A+     M+   L+P 
Sbjct: 101 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 160

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  LI    K +  D     L  MK   C+PD ITYN+LI     +G ++     + 
Sbjct: 161 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFD 220

Query: 269 SML 271
            ML
Sbjct: 221 EML 223



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 3/142 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++ +I     ++K++E   +  NE     +I  LC+   M+ A+    +M+     P  
Sbjct: 137 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 196

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN +I G  K G    A  F +EM E    P   TY+ LI  + K    D     L  
Sbjct: 197 ITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQ 256

Query: 235 -MKLDGCSPDHITYNLLIQEFA 255
              ++GC+ D  TY  ++   A
Sbjct: 257 ETTINGCTIDIHTYTAIVDWLA 278



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +EEA+   +++      P +  Y S+I G  K  +  EA     EM    L+  
Sbjct: 31  LCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALD 90

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           +  Y  LI+   +     +     K M   GC PD +T + +I   + AG +      +K
Sbjct: 91  TVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 150

Query: 269 SM 270
           SM
Sbjct: 151 SM 152


>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
 gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 938

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 112 FLKNSSRSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           FL  SS+ ++   +F   +      I+ SR   +N+  +I  LC+ G+ ++A     +ME
Sbjct: 649 FLDTSSKHKRADAIFKTHETLLSYGIKLSR-QVYNT--LIATLCKLGMTKKAAMVMGDME 705

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
                P    +NS++HGY       +AL   + M E  +SP   TY+ +I+      +  
Sbjct: 706 ARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIK 765

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E+D  L  MK  G  PD  TYN LI   A  G +K     Y  M+   +  ++ST   ++
Sbjct: 766 EVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLI 825

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             + N G          ++L +R  LKE
Sbjct: 826 SEFANVG----------KMLQARELLKE 843



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 62/319 (19%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I+      +I  LCE GL +EA +   EM    + P    YN++I G+ K+G F  A   
Sbjct: 159 IDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKAL 218

Query: 197 LNEMKEMNL----------------------------SPQSDTYDGLIQAYGKYKMYDEI 228
           ++E+ E+NL                             P   T+  +I    K     E 
Sbjct: 219 VDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEG 278

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + L+ M+     P+H+TY  L+     A + +     Y  M+ + + +       ++D 
Sbjct: 279 GLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 338

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G L + EK +K LL       ED   ++  V     +   L   GD          
Sbjct: 339 LFKAGDLREAEKTFKMLL-------ED--NQVPNVVTYTALVDGLCKAGD---------- 379

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                  LS A        + ++ +M    V  NV T + ++  Y+K    +    LL +
Sbjct: 380 -------LSSA--------EFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRK 424

Query: 409 LPTRHVKPDIVTIGILYDA 427
           +  ++V P+  T G + D 
Sbjct: 425 MEDQNVVPNGFTYGTVIDG 443



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 120 RQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           R+  + F M   +E +++ N      ++  LC+ G +  A     +M   ++ P++  Y+
Sbjct: 346 REAEKTFKML--LEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 403

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKM 234
           S+I+GY K G   EA+  L +M++ N+ P   TY    DGL +A GK +M  E+    K 
Sbjct: 404 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA-GKEEMAIELS---KE 459

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M+L G   ++   + L+      G +K ++G  K M++K + L      +++D +   G
Sbjct: 460 MRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 518



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 127/322 (39%), Gaps = 49/322 (15%)

Query: 108 AVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQE 164
           A    + NS R +   + +  +W  ++   I     +   ++GMLCE G MEEA+    +
Sbjct: 574 ATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQ 633

Query: 165 MEGFALKPSLEIYNSIIHGYSK------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           M    + P+L  Y   +   SK      I K +E LL       + LS Q   Y+ LI  
Sbjct: 634 MMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYG----IKLSRQ--VYNTLIAT 687

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             K  M  +  M +  M+  G  PD +T+N L+  +     +++   TY  M+   +   
Sbjct: 688 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 747

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
            +T   I+    + G++ +++K+    + SR    +D        +  N + S    +G+
Sbjct: 748 VATYNTIIRGLSDAGLIKEVDKWLSE-MKSRGMRPDD--------FTYNALISGQAKIGN 798

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
              S       ++C                    EM +  +    +T N+++  +  +  
Sbjct: 799 MKGSMT-----IYC--------------------EMIADGLVPKTSTYNVLISEFANVGK 833

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
               R LL E+  R V P+  T
Sbjct: 834 MLQARELLKEMGKRGVSPNTST 855



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 57/307 (18%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + EA + F+ +      P++  Y +++ G  K G  + A   + +M E ++ P 
Sbjct: 339 LFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPN 398

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I  Y K  M +E    L+ M+     P+  TY  +I      GL K  +    
Sbjct: 399 VVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVID-----GLFKAGKEEMA 453

Query: 269 SMLTKRMHLRS-STMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
             L+K M L        ILDA +N     G + +++   K +++    L +     L +V
Sbjct: 454 IELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDV 513

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           + K          GD+ A+                          +   EM+   + W+V
Sbjct: 514 FFKG---------GDEEAAL-------------------------AWAEEMQERGMPWDV 539

Query: 384 TTANIILLAYLKMKD------FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            + N+++   LK         +K +R        + ++PDI T  I+ +++R   D  G 
Sbjct: 540 VSYNVLISGMLKFGKVGADWAYKGMR-------EKGIEPDIATFNIMMNSQRKQGDSEGI 592

Query: 438 LEMWKRI 444
           L++W ++
Sbjct: 593 LKLWDKM 599



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  L + GL++E  +   EM+   ++P    YN++I G +KIG    ++    EM    
Sbjct: 754 IIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADG 813

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA--C------ 256
           L P++ TY+ LI  +       +    LK M   G SP+  TY  +I      C      
Sbjct: 814 LVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVE 873

Query: 257 ----AGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYK 303
               A  L   +G  K M+ ++ ++  + T+  I  A+   GM    E+F K
Sbjct: 874 WNKKAMYLAEAKGLLKEMVEEKGYIPCNQTIYWISAAFSKPGMKVDAERFLK 925



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 45/276 (16%)

Query: 153 GLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL+ + V   + +M    + P +   N +IH + K+G+ + A+  L   +   +S  + T
Sbjct: 107 GLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLL---RNRVISIDTVT 163

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ +I    ++ + DE    L  M   G  PD ++YN LI  F   G   R     K+++
Sbjct: 164 YNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRA----KALV 219

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            +   L   T   +L +Y N   L  +E+ Y+ ++ S      D+V              
Sbjct: 220 DEISELNLITHTILLSSYYN---LHAIEEAYRDMVMS--GFDPDVV-------------- 260

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                    +S I R  L    ++L    LL         REME   V  N  T   ++ 
Sbjct: 261 -------TFSSIINR--LCKGGKVLEGGLLL---------REMEEMSVYPNHVTYTTLVD 302

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  K   ++H   L S++  R +  D+V   +L D 
Sbjct: 303 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 338



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSR---INEFNSQKIIGMLCEEGLMEEAVRAFQE 164
            +IR L ++   +++    D W +  KSR    ++F    +I    + G M+ ++  + E
Sbjct: 753 TIIRGLSDAGLIKEV----DKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCE 808

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    L P    YN +I  ++ +GK  +A   L EM +  +SP + TY  +I    K   
Sbjct: 809 MIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCT 868

Query: 225 YDEIDMCLKMMKL 237
           + +++   K M L
Sbjct: 869 HPDVEWNKKAMYL 881



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 17/264 (6%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-------GKYKMYDEID 229
           YN +I G  K GK      +   M+E  + P   T++ ++ +        G  K++D++ 
Sbjct: 542 YNVLISGMLKFGKVGADWAY-KGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMK 600

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            C       G  P  ++ N+++      G ++        M+   +H   +T    LD  
Sbjct: 601 SC-------GIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTS 653

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
                 D + K ++ LL+    L   +   L     K  M  +   +  D+ +R    + 
Sbjct: 654 SKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDT 713

Query: 350 VWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           V    L+    + SH R   S    M  A +  NV T N I+         K +   LSE
Sbjct: 714 VTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSE 773

Query: 409 LPTRHVKPDIVTIGILYDAR-RIG 431
           + +R ++PD  T   L   + +IG
Sbjct: 774 MKSRGMRPDDFTYNALISGQAKIG 797


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 22/255 (8%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++G     G+  EA+  F  ++   L+P +  Y S+++ Y +  +  +A
Sbjct: 220 KPNIVAYNS--LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKA 277

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               N+MK+ +  P   +Y+ LI AYG   M  E    L  M+ DG  PD ++ + L+  
Sbjct: 278 REVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
                 + R+E   ++  ++ + L +    + + +Y++FG  +K  + Y       T ++
Sbjct: 338 CGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELY-------TSMR 390

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLG----------DDLASRIGRT-ELVWCLRLLSHACLL 362
           E  V+  A  Y  N + S    LG          D + S++  T E +W +R L  +   
Sbjct: 391 ESNVKPDAVTY--NILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIRWLEESLGP 448

Query: 363 SHRGIDSVVREMESA 377
             R     +R+ ++A
Sbjct: 449 VQRDGSKWIRDWKTA 463



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 139/312 (44%), Gaps = 11/312 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  +IYNS+IH +S+ G++  A+  + +M    + P   TY+ 
Sbjct: 27  VDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNN 86

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD +T+N+++          +    ++ M   
Sbjct: 87  VINACGAAGNWKKALELCKKMTE-NGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFS 331
            +   + T+  I+   +  G   +  + +  +   RT    D+V    +   Y       
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 332 RLDDLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
               + D + +   +  +V    LL ++A    HR   ++   ++   +R ++ +   +L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
            AY +    +  R + +++     KP+ V+   L DA    +   G L+  + +G L + 
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDA----YGSAGMLK--EAVGLLHEM 319

Query: 451 VEINTDPLVLAV 462
            +    P V+++
Sbjct: 320 EKDGIQPDVVSI 331



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 134/339 (39%), Gaps = 22/339 (6%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE--MNLSPQSDTYDG 214
           +A+  F+ M+G  +       N IIH   KIG+  EA+   N M+E      P   TY  
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTS 193

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ +Y  Y   +       +M  +G  P+ + YN L+  +A  G+ +     +   L K+
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFN--LIKK 251

Query: 275 MHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             LR    +  ++L+AY      +K  + + ++  +     +     L + Y    M   
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIIL 390
              L  ++     + ++V    LL+ AC    +   I++++    S  +  N    N  +
Sbjct: 312 AVGLLHEMEKDGIQPDVVSISTLLA-ACGRCRQITRIETILEAARSRGIDLNTVAYNSGI 370

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
            +YL   D++    L + +   +VKPD VT  IL                  ++G   ++
Sbjct: 371 KSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGS-------------SKLGKYTES 417

Query: 451 VEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRW 489
           +    D +   V     FL     +  SL P  R+  +W
Sbjct: 418 LRFFEDMVDSKVSSTKEFLWTIRWLEESLGPVQRDGSKW 456



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 3/256 (1%)

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           +IY  +I  Y++  + ++A     EM+E    P +D Y+ LI A+ +   +      ++ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M      P   TYN +I     AG  K+     K M    +     T   +L A  N   
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR--TELVWC 352
             K   +++ +  +        +  +    +K        +L + +  R  +   ++V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 353 LRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
             ++   C+        ++   M +  V+ N+   N +L AY      +    + + +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 412 RHVKPDIVTIGILYDA 427
             ++PDIV+   L +A
Sbjct: 252 NGLRPDIVSYTSLLNA 267


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 16/296 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N++    +I   C+ G ++EAV+ F EM     +KP   +YN++I GY   GK + ALL+
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            + M E  ++    TY+ L+ A        E    ++ M   G +PD  TYN+LI     
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 668

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +K+    +++M  + +     T  A++ A    G + + +K +   +  R  ++ DL
Sbjct: 669 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV--RRGIRPDL 726

Query: 317 VRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
           V  L    I ++  S   D     +G+    RI   ++ +   L+   CLL    +D   
Sbjct: 727 V--LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT-LMRGLCLLGR--VDEAR 781

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ EM    ++ ++ T N ++  Y    D K    + +E+  +   P ++T   L
Sbjct: 782 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 837



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            + + S S  I + F++   +EK RI  ++     ++  LC  G ++EA +   EM    
Sbjct: 732 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P L  YN++I GYS  G   +AL   NEM     +P   TY+ LIQ   K    D+ +
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             +K M  +G +PD  TY  LI+
Sbjct: 852 NMVKEMVENGITPDDSTYISLIE 874



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 122 IPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           + +  ++++N+ +   R        +I  L ++G ++E  + F E     ++P L +YN+
Sbjct: 672 VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 731

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+ +S  G  + A   + EM++  ++P   TY+ L++        DE    +  M   G
Sbjct: 732 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             PD +TYN LI  ++  G +K        M+ K  +    T  A++      G  D  E
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 300 KFYKRLL-NSRTP 311
              K ++ N  TP
Sbjct: 852 NMVKEMVENGITP 864



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A     EME   + P    YN+++ G   +G+ +EA   ++EM E  + P   TY
Sbjct: 740 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 799

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + LI  Y  K  + D + +  +MM   G +P  +TYN LIQ     G     E   K M+
Sbjct: 800 NTLISGYSMKGDVKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 858

Query: 272 TKRMHLRSSTMVAILDA 288
              +    ST +++++ 
Sbjct: 859 ENGITPDDSTYISLIEG 875



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 131/337 (38%), Gaps = 56/337 (16%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSP 207
           LC  G    A+   ++M     +P+   YN++I G+   G+   AL  + EM+E   ++P
Sbjct: 493 LCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 548

Query: 208 QSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL------ 260
              TY  +I  + K    DE + +  +M+      P+ + YN LI  +   G L      
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 261 -KRM-----------------------EGTYKSMLTKRMHLRS-----STMVAILDAYMN 291
             RM                        GT    L + M  +       T   +++ +  
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 668

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTEL 349
            G + K  + ++ +  SR  ++  +V   A +Y   K       D L D+   R  R +L
Sbjct: 669 EGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 726

Query: 350 VWCLRLLSHACLLSHRGIDSVVR------EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           V     L +A + SH    ++ R      EME  ++  +  T N ++     +      R
Sbjct: 727 V-----LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 781

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            L+ E+  R ++PD+VT   L     +  D   AL +
Sbjct: 782 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRI 818



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 44/267 (16%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M    L      +N ++      GK   AL  L +M      P + TY+ +I 
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 522

Query: 218 AY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            +  + ++   +D+  +M +  G +P+  TY  +I  +   G +      +  MLTK   
Sbjct: 523 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 582

Query: 277 LRSSTMV-AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
              + M  A++  Y + G LD    +  R           +V +   + +  Y       
Sbjct: 583 KPEAVMYNALIGGYCDQGKLDTALLYRDR-----------MVERGVAMTVATY------- 624

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAY 393
                              LL HA  +  RG ++  +V EM    +  +V T NI++  +
Sbjct: 625 ------------------NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 666

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVT 420
            K  + K    +   +  R V+  +VT
Sbjct: 667 CKEGNVKKALEIFENMSRRGVRATVVT 693


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I  LC+ G ME A+  F +ME   + P++  YN II+G  + G+ + A     +
Sbjct: 244 FSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEK 303

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P   TY  LI    K   +D+++  L  M   G +P+ + +N LI  +   G 
Sbjct: 304 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMG- 362

Query: 260 LKRMEGTYK---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
              +EG  K    M++K +   S T+ +++  +     ++  E   + +L+S   +  D
Sbjct: 363 --NIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPD 419



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           +K   ++  +     + +N++   I  N      +I  +C  GL+E+A     EM     
Sbjct: 635 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 694

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P++  Y ++I GY K+G+ + A     EM   N+ P   TY  +I  Y K    ++ + 
Sbjct: 695 VPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANN 754

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            L  MK  G  PD +TYN+L   F  A  +         M T+ + +   T   ++  +
Sbjct: 755 LLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 11/299 (3%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S  ++  S  +I  LC  G + EA R  +EM    L      YN++I G+   GK     
Sbjct: 484 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 543

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
               EM +  + P   TY+ L++        D+        K  G   +  TY ++++ +
Sbjct: 544 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 603

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRT 310
             A  ++ +E  +  +L+K+M L S     I+ A+   G     L  +E    + +    
Sbjct: 604 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 663

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSHRGI-D 368
                L+  +  + +       +D++  +     G    V C   L+   C L      +
Sbjct: 664 ATYSSLIHGVCNIGLVEDAKHLIDEMRKE-----GFVPNVVCYTALIGGYCKLGQMDTAE 718

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S   EM S  +  N  T  +++  Y K+ + +    LL ++    + PD+VT  +L + 
Sbjct: 719 STWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNG 777



 Score = 41.6 bits (96), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 111/285 (38%), Gaps = 27/285 (9%)

Query: 32  DRVFFAKTLIRKPISCCCLS--SAPSLDYHSTKHT-----TLLVESYHEHQALNALIQRL 84
           D++FF+  L   P++C      ++ S  +  T H+      LL+ S     A   LI+ +
Sbjct: 77  DQLFFSIGLKANPMTCLNFFYFASNSFKFRFTIHSYCTLILLLIRSKFIPPARLLLIRLI 136

Query: 85  NKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK 144
           +      L +L  D +         +  L +     +  Q FD+  ++  ++        
Sbjct: 137 DGN----LPVLNLDSEKFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRN----- 187

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +G  C       AV  F  +      PSL+  N ++    K  +F +       M E  
Sbjct: 188 -LGFSC-------AVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSE-G 238

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             P   ++  +I A  K  KM + I++ +KM KL G SP+ +TYN +I      G L   
Sbjct: 239 ACPDVFSFTNVINALCKGGKMENAIELFMKMEKL-GISPNVVTYNCIINGLCQNGRLDNA 297

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
               + M  K +     T  A+++  +     DK+      ++ S
Sbjct: 298 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGS 342



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 141/393 (35%), Gaps = 48/393 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            ++   +S QI    +  + I  S   I+  N   ++  LC++     A R  + M    
Sbjct: 389 LMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRN 448

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +PS  +   ++ G  K GK  EA      + E        T + LI          E  
Sbjct: 449 FRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEAS 508

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKRMHLRSSTMVAIL 286
             +K M   G   D ITYN LI  F   G   ++EG ++    M  + +     T   +L
Sbjct: 509 RIVKEMLERGLPMDRITYNALILGFCNEG---KVEGCFRLREEMTKRGIQPDIYTYNFLL 565

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
               N G LD   K +     S           + E Y K    +R++D           
Sbjct: 566 RGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA---NRIED----------- 611

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                               ++++  E+ S K+  N    NII+ A+ +  +      LL
Sbjct: 612 --------------------VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLL 651

Query: 407 SELPTRHVKPDIVTI-GILYDARRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVY 463
             + ++ + P+  T   +++    IG   D    ++  ++ GF+   V       ++  Y
Sbjct: 652 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA---LIGGY 708

Query: 464 GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
            K   +   E  +  +  ++    ++TY  +ID
Sbjct: 709 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMID 741


>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14770, mitochondrial; Flags: Precursor
          Length = 940

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 112 FLKNSSRSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           FL  SS+ ++   +F   +      I+ SR   +N+  +I  LC+ G+ ++A     +ME
Sbjct: 651 FLDTSSKHKRADAIFKTHETLLSYGIKLSR-QVYNT--LIATLCKLGMTKKAAMVMGDME 707

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
                P    +NS++HGY       +AL   + M E  +SP   TY+ +I+      +  
Sbjct: 708 ARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIK 767

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E+D  L  MK  G  PD  TYN LI   A  G +K     Y  M+   +  ++ST   ++
Sbjct: 768 EVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLI 827

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             + N G          ++L +R  LKE
Sbjct: 828 SEFANVG----------KMLQARELLKE 845



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 62/319 (19%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I+      +I  LCE GL +EA +   EM    + P    YN++I G+ K+G F  A   
Sbjct: 161 IDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKAL 220

Query: 197 LNEMKEMNL----------------------------SPQSDTYDGLIQAYGKYKMYDEI 228
           ++E+ E+NL                             P   T+  +I    K     E 
Sbjct: 221 VDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEG 280

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + L+ M+     P+H+TY  L+     A + +     Y  M+ + + +       ++D 
Sbjct: 281 GLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 340

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G L + EK +K LL       ED   ++  V     +   L   GD          
Sbjct: 341 LFKAGDLREAEKTFKMLL-------ED--NQVPNVVTYTALVDGLCKAGD---------- 381

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                  LS A        + ++ +M    V  NV T + ++  Y+K    +    LL +
Sbjct: 382 -------LSSA--------EFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRK 426

Query: 409 LPTRHVKPDIVTIGILYDA 427
           +  ++V P+  T G + D 
Sbjct: 427 MEDQNVVPNGFTYGTVIDG 445



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 120 RQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           R+  + F M   +E +++ N      ++  LC+ G +  A     +M   ++ P++  Y+
Sbjct: 348 REAEKTFKML--LEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 405

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKM 234
           S+I+GY K G   EA+  L +M++ N+ P   TY    DGL +A GK +M  E+    K 
Sbjct: 406 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA-GKEEMAIELS---KE 461

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M+L G   ++   + L+      G +K ++G  K M++K + L      +++D +   G
Sbjct: 462 MRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 520



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 49/322 (15%)

Query: 108 AVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQE 164
           A    + NS R +   + +  +W  ++   I     +   ++GMLCE G MEEA+    +
Sbjct: 576 ATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQ 635

Query: 165 MEGFALKPSLEIYNSIIHGYSK------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           M    + P+L  Y   +   SK      I K +E LL       + LS Q   Y+ LI  
Sbjct: 636 MMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYG----IKLSRQ--VYNTLIAT 689

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             K  M  +  M +  M+  G  PD +T+N L+  +     +++   TY  M+   +   
Sbjct: 690 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 749

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
            +T   I+    + G++ +++K+    + SR    +D        +  N + S    +G+
Sbjct: 750 VATYNTIIRGLSDAGLIKEVDKWLSE-MKSRGMRPDD--------FTYNALISGQAKIGN 800

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                                     +G  ++  EM +  +    +T N+++  +  +  
Sbjct: 801 -------------------------MKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGK 835

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
               R LL E+  R V P+  T
Sbjct: 836 MLQARELLKEMGKRGVSPNTST 857



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 57/307 (18%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + EA + F+ +      P++  Y +++ G  K G  + A   + +M E ++ P 
Sbjct: 341 LFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPN 400

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I  Y K  M +E    L+ M+     P+  TY  +I      GL K  +    
Sbjct: 401 VVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVID-----GLFKAGKEEMA 455

Query: 269 SMLTKRMHLRS-STMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
             L+K M L        ILDA +N     G + +++   K +++    L +     L +V
Sbjct: 456 IELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDV 515

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           + K          GD+ A+                          +   EM+   + W+V
Sbjct: 516 FFKG---------GDEEAAL-------------------------AWAEEMQERGMPWDV 541

Query: 384 TTANIILLAYLKMKD------FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            + N+++   LK         +K +R        + ++PDI T  I+ +++R   D  G 
Sbjct: 542 VSYNVLISGMLKFGKVGADWAYKGMR-------EKGIEPDIATFNIMMNSQRKQGDSEGI 594

Query: 438 LEMWKRI 444
           L++W ++
Sbjct: 595 LKLWDKM 601



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  L + GL++E  +   EM+   ++P    YN++I G +KIG    ++    EM    
Sbjct: 756 IIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADG 815

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA--C------ 256
           L P++ TY+ LI  +       +    LK M   G SP+  TY  +I      C      
Sbjct: 816 LVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVE 875

Query: 257 ----AGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYK 303
               A  L   +G  K M+ ++ ++  + T+  I  A+   GM    E+F K
Sbjct: 876 WNKKAMYLAEAKGLLKEMVEEKGYIPCNQTIYWISAAFSKPGMKVDAERFLK 927



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 45/276 (16%)

Query: 153 GLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           GL+ + V   + +M    + P +   N +IH + K+G+ + A+  L   +   +S  + T
Sbjct: 109 GLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLL---RNRVISIDTVT 165

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ +I    ++ + DE    L  M   G  PD ++YN LI  F   G   R     K+++
Sbjct: 166 YNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRA----KALV 221

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            +   L   T   +L +Y N   L  +E+ Y+ ++ S      D+V              
Sbjct: 222 DEISELNLITHTILLSSYYN---LHAIEEAYRDMVMS--GFDPDVV-------------- 262

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                    +S I R  L    ++L    LL         REME   V  N  T   ++ 
Sbjct: 263 -------TFSSIINR--LCKGGKVLEGGLLL---------REMEEMSVYPNHVTYTTLVD 304

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  K   ++H   L S++  R +  D+V   +L D 
Sbjct: 305 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 340



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSR---INEFNSQKIIGMLCEEGLMEEAVRAFQE 164
            +IR L ++   +++    D W +  KSR    ++F    +I    + G M+ ++  + E
Sbjct: 755 TIIRGLSDAGLIKEV----DKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCE 810

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    L P    YN +I  ++ +GK  +A   L EM +  +SP + TY  +I    K   
Sbjct: 811 MIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCT 870

Query: 225 YDEIDMCLKMMKL 237
           + +++   K M L
Sbjct: 871 HPDVEWNKKAMYL 883



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 17/264 (6%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-------GKYKMYDEID 229
           YN +I G  K GK      +   M+E  + P   T++ ++ +        G  K++D++ 
Sbjct: 544 YNVLISGMLKFGKVGADWAY-KGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMK 602

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            C       G  P  ++ N+++      G ++        M+   +H   +T    LD  
Sbjct: 603 SC-------GIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTS 655

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
                 D + K ++ LL+    L   +   L     K  M  +   +  D+ +R    + 
Sbjct: 656 SKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDT 715

Query: 350 VWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           V    L+    + SH R   S    M  A +  NV T N I+         K +   LSE
Sbjct: 716 VTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSE 775

Query: 409 LPTRHVKPDIVTIGILYDAR-RIG 431
           + +R ++PD  T   L   + +IG
Sbjct: 776 MKSRGMRPDDFTYNALISGQAKIG 799


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 141/337 (41%), Gaps = 23/337 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +  V++ L  + R   + ++F   M KN      NE     ++   C  G++E A++  +
Sbjct: 284 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMP---NEVTFDMLVRFFCRGGMVERAIQVLE 340

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M G     +  + N +I+   K G+ ++A  FLN M     SP + +Y  +++   + +
Sbjct: 341 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 400

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++    LK M    C P+ +T+N  I      GL+++     + M      +   T  
Sbjct: 401 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 460

Query: 284 AILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
           A+++ +   G +D  +E FY       T     L+  L           RLD   + LA 
Sbjct: 461 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA-------ERLDAAAELLAE 513

Query: 343 RIGR---TELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            + +     +V    L+S  C   L    I+ V + ME      N+ T N +L    K  
Sbjct: 514 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITKDC 572

Query: 398 DFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
           + +    LL  L +  V PDIVT    IG+L    R+
Sbjct: 573 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 609



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 58/114 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C+     +A+    EM      P++  YN II+G  + G+ ++A  FLN +      P 
Sbjct: 221 VCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPD 280

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           + +Y  +++     K +++++     M    C P+ +T+++L++ F   G+++R
Sbjct: 281 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 334



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +   + ++N  R  +      + +  E+S   ++ F    ++   C  G ++ A R    
Sbjct: 110 YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIAS 169

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    + P    Y  II G    G+  EAL  L++M      P   TY  L++A  K   
Sbjct: 170 M---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 226

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + +    L  M+  GC+P+ +TYN++I
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVII 253



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 2/280 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C EG +++A      +  +  +P    Y +++ G     ++ +      EM E N
Sbjct: 252 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 311

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+D L++ + +  M +     L+ M   GC+ +    N++I      G +    
Sbjct: 312 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 371

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               +M +      + +   +L         +  ++  K ++    P  E        + 
Sbjct: 372 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 431

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            +  +  +   L + ++       +V    L++  C+     +DS +    S   + N  
Sbjct: 432 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR--VDSALELFYSMPCKPNTI 489

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T   +L      +       LL+E+  +   P++VT  +L
Sbjct: 490 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 529



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +    II  LC+ G + EA+    +M     +PS+  Y  ++    K   F +A+  L
Sbjct: 175 DAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 234

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+    +P   TY+ +I    +    D+    L  +   G  PD ++Y  +++    A
Sbjct: 235 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 294

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              + +E  +  M+ K       T   ++  +   GM+++
Sbjct: 295 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 334



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C++GLM+EA+   ++M      P+L  YN+++ G +K     EAL  L+ +    
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLI 251
           +SP   TY  +I   G     D ++  +KM  +    G  P  + YN ++
Sbjct: 589 VSPDIVTYSSII---GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 635



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+     +    + P +  Y+SII   S+  +  EA+   + ++++ + P++  Y+ +
Sbjct: 575 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 634

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           + A  K    D        M  +GC P+ +TY  LI+  A    LK      + + ++
Sbjct: 635 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 692



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             IIG+L  E  +EEA++ F  ++   ++P   IYN I+    K    + A+ F   M  
Sbjct: 597 SSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 656

Query: 203 MNLSPQSDTYDGLIQA 218
               P   TY  LI+ 
Sbjct: 657 NGCMPNELTYITLIEG 672


>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Brachypodium distachyon]
          Length = 519

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G +  A+  F +M     KP   +YNS+I    H   K     +AL + ++
Sbjct: 117 KLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFDK 176

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK +    P   TY+ L++A  +     ++++  K +     +PD  TYN +I  +   G
Sbjct: 177 MKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYGKNG 236

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++K ME     M +K+      T   ++D+Y    + DKME+ +K LL S    KE    
Sbjct: 237 MIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRS----KERPTH 292

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVV 371
                 I NY  +RL +  + +  ++   EL +    ++  CL+              + 
Sbjct: 293 PTFNSMITNYGKARLKEKAESVLEKMD--ELGFKPSYVTQECLIMMYAYCDCVSKAQQIF 350

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ +++    +++ N +L AY   +       LL     + V P   T  +LY A
Sbjct: 351 DELVNSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDAAIEKGVVPGASTYKLLYKA 406



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 91/213 (42%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           FD  K IE+ + N      ++         ++    F++++   + P +  YN +I GY 
Sbjct: 174 FDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYG 233

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L  MK     P   T++ LI +YG+ +++D+++   K +      P H 
Sbjct: 234 KNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHP 293

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E   + M          T   ++  Y     + K ++ +  L
Sbjct: 294 TFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDEL 353

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
           +NS++ +    +  + + Y  N +    D L D
Sbjct: 354 VNSQSTVPLSSLNAMLDAYCMNRLPMEADRLLD 386



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N+ T NI+L A  +  D K + +L  +L    V PDI T   + D    G+   G ++  
Sbjct: 186 NIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVID----GYGKNGMIKEM 241

Query: 442 KRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
           + +    K+ +   D +   +    YG+       E+V+ SL    R K+R T+     +
Sbjct: 242 ESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSL---LRSKERPTHPTFNSM 298

Query: 498 VIKHNGKNL 506
           +  +    L
Sbjct: 299 ITNYGKARL 307


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R +    +  QI +  ++++ +E+  S  + F    +I  LC++  +E  V    EM+  
Sbjct: 96  RKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQAR 155

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              P++  Y ++IHG+   G+ + A+  L+EM+   ++P + TY  LIQ        +  
Sbjct: 156 GFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERA 215

Query: 229 DMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLK 261
            + LK MKL G  C P+ +TY  LI      GL +
Sbjct: 216 ILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFE 250



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 116 SSRSRQIPQVFDMWK----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + R R IP    +++    N + + +  + S+KI G LC++G + EA+  F+EME     
Sbjct: 66  TRRRRGIPSSLRIYRPKLLNSQDTDVISY-SRKING-LCKKGQIAEAMEIFREMEEKGSA 123

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    YN +I+G  K  +    +  ++EM+    SP   TY  LI  +      D     
Sbjct: 124 PDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDI 183

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           L  M+  G +P+ +TY  LIQ     G ++R       ++ K M LR +
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVER-----AILVLKEMKLRGN 227



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++I  LC++GL E  +    EM      P+   Y ++IHG  + G F EA + LNEM  +
Sbjct: 238 QLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAI 297

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL---DGCSPDHITYNLLIQEFACAGLL 260
                   Y+ LI    K     E+D   +M  L    G +PD  TY  LIQ    AGLL
Sbjct: 298 GCELDVVIYNSLIDGLCKMG---ELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLL 354

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
               G  + M  K +   S T   +++ +
Sbjct: 355 DEALGLMQEMRAKGIVPNSVTYTTLINGF 383



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME--GFALKPSLEI 176
           ++    D+   +E   I  N      +I  LC+ G +E A+   +EM+  G    P++  
Sbjct: 176 RVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVT 235

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y  +IHG  + G F   + FL+EM      P + TY  LI    +   + E  + L  M 
Sbjct: 236 YTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMV 295

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GC  D + YN LI      G L         M+ K +     T  +++    + G+LD
Sbjct: 296 AIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLD 355

Query: 297 K 297
           +
Sbjct: 356 E 356



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 54/120 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC++G   EA     EM     +  + IYNS+I G  K+G+ + A    
Sbjct: 267 NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQ 326

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M E  ++P   TY  LIQ      + DE    ++ M+  G  P+ +TY  LI  F  A
Sbjct: 327 ILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQA 386



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+ GL++EA+   QEM    + P+   Y ++I+G+++  + + AL  +NE
Sbjct: 339 FTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNE 398

Query: 200 MKEMNLSPQSDTYDGLIQA 218
           MK   L P  D Y  L ++
Sbjct: 399 MKSNGLMPAGDIYKILFKS 417



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y+  I+G  K G+  EA+    EM+E   +P S TY+ LI    K    +     +  M+
Sbjct: 94  YSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQ 153

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G SP  +TY  LI  F  AG +         M  + +   + T  A++    + G ++
Sbjct: 154 ARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVE 213

Query: 297 K 297
           +
Sbjct: 214 R 214



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  +I  LC+ G ++ A      M    + P +  Y S+I G    G  +EAL  + E
Sbjct: 306 YNS--LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQE 363

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           M+   + P S TY  LI  + +    D     +  MK +G  P    Y +L +  
Sbjct: 364 MRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
          Length = 588

 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 120/315 (38%), Gaps = 40/315 (12%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           QVF M K        E    K++ +L   G    A   F EM     +P+ E+Y ++I  
Sbjct: 132 QVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAA 191

Query: 184 YSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           Y + G  ++A   L +MK   +  P   TY  +I+A      +D +D   K M     +P
Sbjct: 192 YCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAP 251

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKMEKF 301
           + +T N+++  +  AG L  ME    +ML          TM  IL  + N G ++ MEK+
Sbjct: 252 NTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKW 311

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
           Y++        +   +  L   Y K  M+ ++                            
Sbjct: 312 YEKFRGYGIEPETRTLNILIGAYGKKRMYDKM---------------------------- 343

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                  +V+  M      W   T N ++ A+    D K++    +++    +KPD  T 
Sbjct: 344 ------SAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTF 397

Query: 422 GILYDARRIGFDGTG 436
             L +    GF   G
Sbjct: 398 CCLIN----GFGNAG 408



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP +   N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++  
Sbjct: 286 KPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSA 345

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            ++ M+         T+N +I+ FA AG  K ME T+  M  + M   + T   +++ + 
Sbjct: 346 VMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFG 405

Query: 291 NFGMLDK---MEKFYKRL 305
           N G+  K   M K  +RL
Sbjct: 406 NAGLFHKVVGMVKLAERL 423



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   + +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 295 ILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLA 354

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + T++ +I+A+        ++     M+ +G  PD  T+  LI  F  AGL  ++ 
Sbjct: 355 FPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVV 414

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRL 305
           G  K  L +R+ +   T    A+L A +    L +ME+ + R+
Sbjct: 415 GMVK--LAERLGVPMDTTFHNAVLMACVKAEDLMEMERVFMRM 455



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/124 (19%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    + G  +     F +M    +KP  + +  +I+G+   G F++ +  +  
Sbjct: 362 FNN--VIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVVGMVKL 419

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            + + +   +  ++ ++ A  K +   E++     MK   C PD  TY++L+  +   G+
Sbjct: 420 AERLGVPMDTTFHNAVLMACVKAEDLMEMERVFMRMKQIQCVPDATTYSILVGAYRKEGM 479

Query: 260 LKRM 263
             ++
Sbjct: 480 TDKI 483


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 9/285 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC++G ++EA R   EME   L P +  YN++I+G        +    +++M+   
Sbjct: 323 LIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKG 382

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY+ +++ Y K    D     L+ M+  G SPD +T+N LI  +  AG L    
Sbjct: 383 VKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAF 442

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M  K + + S T+  IL        LD   K           + E     L   Y
Sbjct: 443 RMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGY 502

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-----IDSVVREMESAKV 379
            K+        L D++  +     ++    ++   C   H G     ID +   +ES  V
Sbjct: 503 FKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLC---HSGKTDQSIDKLNELLESGLV 559

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             + TT N I+L Y +    +      +++  +  KPD+ T  IL
Sbjct: 560 P-DETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNIL 603



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 21/287 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +LC++G + EA     +M+   L P+   +N ++ GY K+G   EA   ++ M + N
Sbjct: 253 ILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNN 312

Query: 205 LSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FAC 256
           + P   TY+ LI    K       +++ DE++  LK++      PD +TYN LI   F C
Sbjct: 313 VLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMEN-LKLL------PDVVTYNTLINGCFDC 365

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           +  LK  E   K M  K +   + T   ++  Y+  G +D      +++  S        
Sbjct: 366 SSSLKGFELIDK-MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVT 424

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              L   Y K    S    + D++ SR G       L  + H  L   R +D   + + S
Sbjct: 425 FNTLINGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILHT-LCGERKLDDAYKLLSS 482

Query: 377 AKVRW---NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           A  R    +  +   +++ Y K         L  E+  + + P I+T
Sbjct: 483 ASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIIT 529



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A++R+    S         D+ K   K   N FN   +I   C E  + EA+    +M+ 
Sbjct: 183 ALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNI--LIYGCCIENKLSEAIGLIGKMKD 240

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           F+  P    YN+I+    K GK NEA   L +MK   L P  +T++ L+  Y K     E
Sbjct: 241 FSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKE 300

Query: 228 IDMCLKMMKLDGCSPDHITYNLLI 251
               + +M  +   PD  TYN+LI
Sbjct: 301 AAQVIDLMAQNNVLPDVWTYNMLI 324



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++E +   +I    ++G   EA++ + EM+   + PS+  YN++I G    GK ++++  
Sbjct: 490 VDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDK 549

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           LNE+ E  L P   TY+ +I  Y +    ++       M      PD  T N+L++    
Sbjct: 550 LNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCT 609

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G+L +    + + ++K   + + T   I+        L K ++F +        L E  
Sbjct: 610 EGMLDKALKLFNTWISKGKAIDAVTYNTIISG------LCKEDRFEEAF----DLLAEME 659

Query: 317 VRKLA-EVYIKNYMFSRLDDLG-----DDLASRI 344
            +KL  + Y  N + S L D G     ++  SRI
Sbjct: 660 EKKLGPDCYTYNAILSALADAGRMKEAEEFMSRI 693



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 9/287 (3%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG M+ A    ++ME     P    +N++I+GY K G+ +EA   ++EM    L   S 
Sbjct: 399 KEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSV 458

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           T + ++      +  D+    L      G   D ++Y  LI  +   G        +  M
Sbjct: 459 TLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEM 518

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             K +     T   ++    + G  D+       LL S     E     +   Y +    
Sbjct: 519 KEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQV 578

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTTAN 387
            +     + +  +  + +L  C  LL   C  +   +D  ++      S     +  T N
Sbjct: 579 EKAFQFHNKMVKKSFKPDLFTCNILLRGLC--TEGMLDKALKLFNTWISKGKAIDAVTYN 636

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
            I+    K   F+    LL+E+  + + PD  T    +  L DA R+
Sbjct: 637 TIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRM 683



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 115/298 (38%), Gaps = 39/298 (13%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F ++    +K +   +N +I+G     K +EA+  + +MK+ +  P + +Y+ ++    K
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               +E    L  MK +G  P+  T+N+L+  +   G LK        M    +     T
Sbjct: 260 KGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWT 319

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++      G +D+  +    + N         ++ L +V   N + +   D      
Sbjct: 320 YNMLIGGLCKDGKIDEAFRLKDEMEN---------LKLLPDVVTYNTLINGCFD------ 364

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
                             C  S +G + ++ +ME   V+ N  T N+++  Y+K     +
Sbjct: 365 ------------------CSSSLKGFE-LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDN 405

Query: 402 LRVLLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEMWKRIGFLFKTVEINT 455
               L ++      PD VT   L +    A R+  +    ++   R G    +V +NT
Sbjct: 406 AGNELRKMEESGFSPDCVTFNTLINGYCKAGRLS-EAFRMMDEMSRKGLKMNSVTLNT 462


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 25/198 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++ + CEEG M+  +    EM+  A+ P+   Y  +I G  K  K  E+   L
Sbjct: 595 NAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLL 654

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +M  + L+P   +Y+ +IQA+ K       +++YD+       M L    P  +TYN+L
Sbjct: 655 EDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDK-------MLLHNLEPTSVTYNIL 707

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F   G LK  +    S+  ++++L       I+ A+   G +DK   ++++      
Sbjct: 708 INGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQ------ 761

Query: 311 PLKEDLVRKLAEVYIKNY 328
                +V K  EV I++Y
Sbjct: 762 -----MVEKGFEVSIRDY 774



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 21/333 (6%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           ++D++  I+ S    +E+ S  ++  LC +   ++AV  FQ+ EG   +PS+  +N+I+ 
Sbjct: 230 MWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMS 289

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCS 241
            Y K+G  + A  F   M +  L P + +Y+ LI        M + +D+    M+  G  
Sbjct: 290 RYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDL-KNDMENHGLE 348

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD +TYN+L + F   GL+       + ML K  +    T   ++  +   G +++  K 
Sbjct: 349 PDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKL 408

Query: 302 YKRLLN--------SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           YK +++        S T L   L +   +V +   +F  ++  G        R +L+   
Sbjct: 409 YKEMISHGFQLSIISSTVLLGSLCKS-RQVDVAFKLFCEMEANGL-------RPDLITYS 460

Query: 354 RLLSHACLLSHRGIDSVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            L+   C         ++ E M S ++  N      IL+   +       R+    L T 
Sbjct: 461 TLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITS 520

Query: 413 HVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
           ++  DI+   I+ D      +   A++++K++G
Sbjct: 521 NLSLDIILYNIMIDGYIKRGNTREAVKLYKQLG 553



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 25/305 (8%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +++  +S  ++G LC+   ++ A + F EME   L+P L  Y+++IHG  K G+  +A+L
Sbjct: 418 QLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAIL 477

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              +M    + P S  +  ++    +     +  M    +     S D I YN++I  + 
Sbjct: 478 LYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYI 537

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--PLK 313
             G  +     YK +  K +   S T+V        F +  K+ +  +RLL++     L+
Sbjct: 538 KRGNTREAVKLYKQLGEKGI---SPTIVTFNSLMYGFCINRKLSQ-ARRLLDTIKLHGLE 593

Query: 314 EDLV--RKLAEVYI-KNYMFSRLDDLGDDLASRIGRTELVWCLRL--------LSHACLL 362
            + V    L  VY  +  M S L+ L +  A  IG T + + + +        L  +C L
Sbjct: 594 PNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQL 653

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                   + +M++  +  +  + N I+ A+ K +D +    L  ++   +++P  VT  
Sbjct: 654 --------LEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYN 705

Query: 423 ILYDA 427
           IL + 
Sbjct: 706 ILING 710



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 2/178 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  FNS  ++   C    + +A R    ++   L+P+   Y ++++ Y + G     L  
Sbjct: 561 IVTFNS--LMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLEL 618

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EMK   + P   TY  +I+   K     E    L+ M   G +PD ++YN +IQ F  
Sbjct: 619 LSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCK 678

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           A  +++    Y  ML   +   S T   +++ +  +G L   +     L N +  L +
Sbjct: 679 ARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNK 736



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++  ++E+ +  ++M+   L P    YN+II  + K     +A    ++M   N
Sbjct: 637 VIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHN 696

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P S TY+ LI  +  Y    + D  L  ++    + +   Y  +I+     G + +  
Sbjct: 697 LEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAV 756

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ M+ K   +      A++       ++ + + F+  +L+      +DL   L   +
Sbjct: 757 VYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAF 816


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 132/299 (44%), Gaps = 37/299 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +  V AF+ ++    KPS + Y  +++ Y++ G  + A     +M+   + P S  Y  L
Sbjct: 297 QAVVSAFERIK----KPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNL 352

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I AY   +  +E   C++ MK +G     +TY++L+  FA  G  +  +  ++    K  
Sbjct: 353 IHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHS 412

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN-------Y 328
            L +     I+ AY     +DK E   + +         D+   + + Y           
Sbjct: 413 SLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLL 472

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--------HRGIDSVVREMESAKVR 380
           +F R  + G + +             ++++ CL++         + ++ V +EME A ++
Sbjct: 473 VFERFKECGLNPS-------------VITYGCLINLYAKLGKVSKALE-VSKEMEHAGIK 518

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            N+ T ++++  +LK+KD+ +   +  +L    +KPD+V    LY+     F G G ++
Sbjct: 519 HNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVV----LYNNIITAFCGMGKMD 573



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 109/275 (39%), Gaps = 3/275 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C  G M+ AV   +EM+    KP+   +  IIHG+++ G+  +AL   + M+   
Sbjct: 562 IITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSG 621

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ LI    + +  ++ +  L  M L G SP+  TY  ++  +A  G   +  
Sbjct: 622 CIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF 681

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  +  + + L   T  A+L A    G +       K +     P    +   L + +
Sbjct: 682 TYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGW 741

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWN 382
            +        DL   +  R G    +       +AC  +   +     + EM+S  V+ N
Sbjct: 742 ARRGDIWEAADLMQQM-KREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPN 800

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           V T   ++  + +    +       E+    +KPD
Sbjct: 801 VKTYTTLINGWARASLPEKALSCFEEMKLSGLKPD 835



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 126/323 (39%), Gaps = 39/323 (12%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F+  +   L PS+  Y  +I+ Y+K+GK ++AL    EM+   +     TY  LI  + K
Sbjct: 474 FERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLK 533

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            K +       + +  DG  PD + YN +I  F   G + R   T K M  +R    + T
Sbjct: 534 LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRT 593

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL--------LNSRTPLKEDLVRK-------------- 319
            + I+  +   G + K    +  +        +++   L   LV K              
Sbjct: 594 FMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT 653

Query: 320 LAEVYIKNYMFSRL----DDLGDDLASRIGRTEL--------VWCLRLLSHACLLSHR-- 365
           LA V    + ++ +      LGD   +    T+L        V+    L  AC  S R  
Sbjct: 654 LAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQ 713

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
              +V +EM +  +  N    NI++  + +  D      L+ ++    V+PDI T     
Sbjct: 714 SALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFI 773

Query: 426 DARRIGFD---GTGALEMWKRIG 445
           +A     D    T  +E  K +G
Sbjct: 774 NACSKAGDMQRATKTIEEMKSVG 796



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            LK   +S ++     + K +    I  N F    +I      G + EA    Q+M+   
Sbjct: 702 LLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREG 761

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P +  Y S I+  SK G    A   + EMK + + P   TY  LI  + +  + ++  
Sbjct: 762 VQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKAL 821

Query: 230 MCLKMMKLDGCSPDHITYNLLI 251
            C + MKL G  PD   Y+ L+
Sbjct: 822 SCFEEMKLSGLKPDRAVYHCLM 843



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 53/126 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++    + G  E A   FQE +      +  IY +II+ Y +    ++A   + EM+E  
Sbjct: 387 LVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEG 446

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +    D Y  ++  Y      D+  +  +  K  G +P  ITY  LI  +A  G + +  
Sbjct: 447 IDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKAL 506

Query: 265 GTYKSM 270
              K M
Sbjct: 507 EVSKEM 512


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 125/315 (39%), Gaps = 53/315 (16%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++E     +I   C+ G ME+A R   EM    L+ +L +YN +I+GY K+G+  EA   
Sbjct: 347 VDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNI 406

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM  + + P + +Y+ L+  Y K  + ++       M  +G +   +TYN L++ F  
Sbjct: 407 LHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCS 466

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--------- 307
            G +      +  ML K +     +   +LD +   G  +K    +K  L          
Sbjct: 467 LGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTT 526

Query: 308 -----------SRTPLKEDLVRKL------AEVYIKNYMFSRLDDLGD-DLASRIGRTEL 349
                       R P  E+LV K+       ++     +FS    +GD D ASRI     
Sbjct: 527 FNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRI----- 581

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
                                + E+E+      +   N ++  +   K    +  +L E+
Sbjct: 582 ---------------------LNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEM 620

Query: 410 PTRHVKPDIVTIGIL 424
             R + P+ V  G L
Sbjct: 621 SNRGLSPNTVAYGAL 635



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 2/271 (0%)

Query: 150 CEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C E  MEEA    QE+ +   L     ++ ++I+GY ++G+  +A   LNEM +  L   
Sbjct: 324 CNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVN 383

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I  Y K     E    L  M   G  PD  +YN L+  +   GL+ +   TY 
Sbjct: 384 LFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYN 443

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           +ML       + T  A+L  + + G +D   + +  +L       E     L + + K+ 
Sbjct: 444 TMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSG 503

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTAN 387
              +  +L  +  +R           +++  C +      + +V +M+  +   ++ T  
Sbjct: 504 KTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYR 563

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
            +   Y K+ D      +L+EL      P I
Sbjct: 564 TLFSGYCKIGDMDRASRILNELENLGFAPTI 594



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 131/342 (38%), Gaps = 37/342 (10%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S +  +  ++WK      +  N      +I  LC+   M EA     +M+ +   P + 
Sbjct: 501 KSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDII 560

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y ++  GY KIG  + A   LNE++ +  +P  + ++ LI  +   K + +++  L  M
Sbjct: 561 TYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEM 620

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ + Y  LI  +   G L      Y  M+ K +        +++  +   G  
Sbjct: 621 SNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKF 680

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEV-YIKNYM------------------------F 330
           D+     + L+   T +  D+     E+  + N++                         
Sbjct: 681 DEANLVLQNLVG--TDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKL 738

Query: 331 SRLDDLGDDLASRIGRTELV--WCLRLLSHACLLSHRGIDSVVRE----MESAKVRWNVT 384
            R++D  + LA    +  +   +    L H C  S  G   V  +    M S  +  N+ 
Sbjct: 739 GRIEDAKNLLADLKDKGFVADNFTYSSLIHGC--SASGFVDVAFDLRDTMLSVGLTPNIV 796

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           T N ++    K  +      L  +L T+ + P+ +T   L D
Sbjct: 797 TYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLID 838



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 92/211 (43%), Gaps = 2/211 (0%)

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV 159
            ++   F  ++R L N+ +     QVFD  + +   R++  +   I+  L + G +   V
Sbjct: 170 SFSAASFDLLLRALANAGQLDGALQVFDEMRTL-GCRLSMRSCNSILNRLAQTGDLGATV 228

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
             F++M+     P       +   Y K+     AL F+ EM +M +      Y  ++  Y
Sbjct: 229 AVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGY 288

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLR 278
            +    ++    L  +   G SP+ +TY LL++ +     ++  EG  + +   K++ + 
Sbjct: 289 CEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVD 348

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
            +   A+++ Y   G ++   +    +++SR
Sbjct: 349 EAVFGAVINGYCQMGRMEDAARLLNEMVDSR 379



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +E+A     +++          Y+S+IHG S  G  + A    + M  + 
Sbjct: 731 VIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVG 790

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY+ LI    K           K +   G SP+ ITYN LI +    G +    
Sbjct: 791 LTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAF 850

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              + M+ + +H    T   +++     G +++  K   +++
Sbjct: 851 KLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMI 892



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I      G ++ A      M    L P++  YNS+I+G  K G+ + A+   
Sbjct: 759 DNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLF 818

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++    +SP + TY+ LI  + K     E     + M  +G  P   TY++LI      
Sbjct: 819 KKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQ 878

Query: 258 GLLK 261
           G ++
Sbjct: 879 GYME 882



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD-EIDMCLKM 234
           ++N +I G  K+G+  +A   L ++K+      + TY  LI         D   D+   M
Sbjct: 727 MWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTM 786

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           + + G +P+ +TYN LI     +G L R    +K + TK +   + T   ++D +   G 
Sbjct: 787 LSV-GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGY 845

Query: 295 LDKMEKFYKRLL 306
           + +  K  +R++
Sbjct: 846 ITEAFKLKQRMI 857


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 144/322 (44%), Gaps = 23/322 (7%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +R+RQ   V  +++++    +  FN   +I  LC++G + EA   F  M+     P +  
Sbjct: 179 ARNRQGGLVRRLFEHLPAPNVFTFNI--VIDFLCKQGELVEARALFVRMKAMGCSPDVVT 236

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YNS+I GY K G+  E  L ++EM++   +    TY+ LI  + K+   ++       MK
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK 296

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G   + +T +  +  F   GL++     +  M  + M     T  +++D     G LD
Sbjct: 297 RLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLD 356

Query: 297 KM-----EKFYKRLLN---SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
                  E  ++ L+    + T + + L ++  +V + + + S ++  G      +   E
Sbjct: 357 DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKE-GKVAVADDVLSLMERAG------VKANE 409

Query: 349 LVWCLRLLSHACLL---SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           L++    L H   +   S R +D ++ EM++  +  +V+    ++    K++     + L
Sbjct: 410 LLY--TTLIHGHFMNKNSERALD-LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSL 466

Query: 406 LSELPTRHVKPDIVTIGILYDA 427
           L ++    ++P+ V    + DA
Sbjct: 467 LHKMDDCGLRPNTVIYTTIMDA 488



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 137/340 (40%), Gaps = 58/340 (17%)

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE------ 175
           +P VFD                 ++ +L + GL+++AVRA   +    + P+        
Sbjct: 132 LPSVFD----------------TLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHIL 175

Query: 176 -------------------------IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
                                     +N +I    K G+  EA      MK M  SP   
Sbjct: 176 LRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVV 235

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ LI  YGK    +E+++ +  M+  GC+ D +TYN LI  F+  G +++    +  M
Sbjct: 236 TYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEM 295

Query: 271 LTKRMHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
             KR+ + ++  T+   +DA+   G++ +  K + ++        E     L +   K  
Sbjct: 296 --KRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKA- 352

Query: 329 MFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVREMESAKVRWNVT 384
              RLDD   L D++  +     +V    ++   C      + D V+  ME A V+ N  
Sbjct: 353 --GRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANEL 410

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               ++  +   K+ +    LL+E+  + ++ D+   G L
Sbjct: 411 LYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTL 450



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 10/172 (5%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   ++EA     +M+   L+P+  IY +I+  + K GK +EA+  L+++ +  L P 
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPN 513

Query: 209 SDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             TY    DGL +A   Y+     D   KM +L G  P+   Y  LI  F   G L +  
Sbjct: 514 VVTYCALIDGLCKAGSIYEAISHFD---KMREL-GLDPNVQVYTTLIDGFCKIGSLSKAV 569

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
                M+ K M L      +++D +M  G L        +++   T L+ DL
Sbjct: 570 HLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMI--ETGLQLDL 619



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 35/145 (24%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G + EA+  F +M    L P++++Y ++I G+ KIG  ++A+  +NEM +  
Sbjct: 520 LIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG 579

Query: 205 LSPQSDTYDGLIQAYGK-----------------------------------YKMYDEID 229
           +S     Y  LI  + K                                     M  E  
Sbjct: 580 MSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEAR 639

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEF 254
             L  M   G +PD   YN LI+++
Sbjct: 640 GVLSEMIGTGITPDKTAYNCLIRKY 664



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 4/188 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      I+    + G   EAV    ++    L+P++  Y ++I G  K G   EA+ 
Sbjct: 476 RPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAIS 535

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             ++M+E+ L P    Y  LI  + K     +    +  M   G S D + Y  LI    
Sbjct: 536 HFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHM 595

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKE 314
             G L+        M+   + L        +  + N  M+ +       ++ +  TP K 
Sbjct: 596 KQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKT 655

Query: 315 D---LVRK 319
               L+RK
Sbjct: 656 AYNCLIRK 663



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 47/110 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+EG +  A      ME   +K +  +Y ++IHG+        AL  LNEMK   +   
Sbjct: 384 LCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELD 443

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
              Y  LI    K +  DE    L  M   G  P+ + Y  ++  F  AG
Sbjct: 444 VSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAG 493



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           I   C   +M+EA     EM G  + P    YN +I  Y K+G   EA    NEM+ +
Sbjct: 626 ISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F +++  L    R+     VFD   +      + +    +I   C+  +++E  R F+EM
Sbjct: 194 FNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEM 253

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM--KEMNLSPQSDTYDGLIQAYGKYK 223
             F   P L  YN+++ G  + GK N A   +N M  K  NL+P   TY  L++ Y    
Sbjct: 254 SRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKH 313

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TM 282
             DE  +  + M   G  P+ ITYN LI+       + +++  ++  L     +  + T+
Sbjct: 314 EIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTL 373

Query: 283 VAILDAYMNFGML-DKMEKFYKRL-LNSR--TPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
             +++A+ N G L D +E F K + LN R  +     L+R L +       F R + L D
Sbjct: 374 NTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQ----RGNFERAEQLFD 429

Query: 339 DLASR 343
           +L+ +
Sbjct: 430 ELSEK 434



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE-ALLFLNEMKEMNLSPQ 208
           C +  ++EA+  F+EM    LKP+   YN++I G  ++ K ++   +F   +      P 
Sbjct: 310 CMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPD 369

Query: 209 SDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           + T + L+ A+     + D +++  KMM L+   PD  TY++LI+     G  +R E  +
Sbjct: 370 TCTLNTLMNAHCNAGNLNDALEVFEKMMVLN-VRPDSATYSVLIRNLCQRGNFERAEQLF 428

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNF-------GMLDKMEKFYKRLLNSRT 310
             +  K + LR      ++ AY +        G   K E+ +++L+   T
Sbjct: 429 DELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGT 478



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKM----YDEI 228
            +NS+I  Y K G F E++   N MK + +SP   T++ L+      G+  M    +DE 
Sbjct: 158 FFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDE- 216

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                M+   G +PD  T+N+LI+ F    ++      +K M   +      T   ++D 
Sbjct: 217 -----MLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDG 271

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
               G ++        ++   T L  D+V
Sbjct: 272 LCRAGKVNIAHNVVNGMVKKSTNLNPDVV 300


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 23/309 (7%)

Query: 121 QIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +   + K  EK R  +++     +I  L      E+A   +++M    +KP + +Y 
Sbjct: 281 RVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYT 340

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            ++ G SK GKF +AL  LNEM E  L P +  Y+ LI+ Y    + DE       +  +
Sbjct: 341 IMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKN 400

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            C     TY +LI     +GL+   +  +  M     +    T  A++D +   G ++K 
Sbjct: 401 DCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKA 460

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           +  + ++   R P                 +F RL    + +        +V   +L   
Sbjct: 461 QLLFYKMEIGRNP----------------SLFLRLSQGANRVLDTASLQTMVE--QLCDS 502

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             +L    I   + ++  +    N+ T NI++  + K  +      L  EL  + + PD 
Sbjct: 503 GLILKAYNI---LMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDS 559

Query: 419 VTIGILYDA 427
           VT G L + 
Sbjct: 560 VTYGTLING 568



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 5/199 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F  +I  +  S +++   Q+FD    + + RI  N+     II  LC+    + A R F 
Sbjct: 199 FSILIDGMCKSGKTQNALQMFD---EMTQRRILPNKITYTIIISGLCQAQKADVAYRLFI 255

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            M+     P    YN+++HG+ K+G+ +EAL  L   ++         Y  LI    + +
Sbjct: 256 AMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRAR 315

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++  +  + M      PD I Y ++++  + AG  K        M  + +   +    
Sbjct: 316 RFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYN 375

Query: 284 AILDAYMNFGMLDKMEKFY 302
           A++  Y + G+LD+ +  +
Sbjct: 376 ALIKGYCDLGLLDEAKSLH 394



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q ++  LC+ GL+ +A     ++      P++  YN +IHG+ K G  N A     E++ 
Sbjct: 493 QTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQL 552

Query: 203 MNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
             LSP S TY    +GL+ A  +   +  +D  LK    +GC+P
Sbjct: 553 KGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK----NGCTP 592



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 1/204 (0%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           + D F  +I+         +  + F+M K+ +  + + F    ++ ++  + ++  A+  
Sbjct: 125 SADAFTVLIQAYAKMDMIEKAVESFEMMKDFD-CKPDVFTYNTVLHVMVRKEVVLLALGI 183

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +  M      P++  ++ +I G  K GK   AL   +EM +  + P   TY  +I    +
Sbjct: 184 YNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQ 243

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            +  D        MK  GC PD +TYN L+  F   G +    G  K     R  L    
Sbjct: 244 AQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQG 303

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL 305
              ++D        +  + +Y+++
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKM 327



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 29/191 (15%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I GM C  GL+ +A + F EME     PS+  +N++I G+ K G   +A L   +M E+ 
Sbjct: 413 ICGM-CRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIG 470

Query: 205 LSPQ-----SDTYDGLIQAYGKYKMYDEI---DMCLK----MMKL--DGCSPDHITYNLL 250
            +P      S   + ++       M +++    + LK    +M+L   G +P+ ITYN+L
Sbjct: 471 RNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNIL 530

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEKFYK 303
           I  F  AG +      +K +  K +   S T   +++  ++       F +LD++ K   
Sbjct: 531 IHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK--- 587

Query: 304 RLLNSRTPLKE 314
              N  TP+ E
Sbjct: 588 ---NGCTPITE 595



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N II    K   F      L E+K    S  +D +  LIQAY K  M ++     +MMK
Sbjct: 94  HNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMK 153

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG--- 293
              C PD  TYN ++       ++    G Y  ML        +T   ++D     G   
Sbjct: 154 DFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQ 213

Query: 294 ----MLDKMEKFYKRLLNSR 309
               M D+M +  +R+L ++
Sbjct: 214 NALQMFDEMTQ--RRILPNK 231


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 42/310 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            I   C+ G ++EA+    EME   +  ++ IYN +I  Y ++G+  EA   + EM+E  
Sbjct: 180 FIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERG 239

Query: 205 LSPQSDTYDGLIQAYGKYK---MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           + P   TY+ LI  Y + K    +   +  ++ M+  G  PD +T+ +L+  +   GL +
Sbjct: 240 IQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTE 299

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           + E  +  M  + +   S +  A+++AY      +K  + ++        +++  V    
Sbjct: 300 QAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEM-------IRKQGVNPTV 352

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           E Y              D   R G  E+V                  +V + M+      
Sbjct: 353 ETYTALL----------DAYRRAGDLEMV-----------------QAVWKSMKVEGCVA 385

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA---- 437
              T   IL A+ K   +K  R L+ E   +  KPD++   +L ++   G     A    
Sbjct: 386 TRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDIL 445

Query: 438 LEMWKRIGFL 447
           LEM K  GFL
Sbjct: 446 LEM-KTAGFL 454



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++E    +Q+M    + PS+ ++ + I  +   G+  EALL   EM+++N+      Y
Sbjct: 153 GSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIY 212

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM---EGTYKS 269
           + LI AYG+    +E +  +  M+  G  P+  TYN LI  +  A   ++    EG  + 
Sbjct: 213 NILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEE 272

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           M    ++    T   +L AY + G+ ++ E+ + R+
Sbjct: 273 MEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRM 308



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 1/189 (0%)

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           + Q  QVF+  K     + N ++   +I    E    E+A RAF+ +    + P++E Y 
Sbjct: 298 TEQAEQVFNRMK-ARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYT 356

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++  Y + G           MK         TY  ++ A+ K   Y E    ++  K  
Sbjct: 357 ALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQ 416

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  PD + YN+L+  +   G   +       M T      S T   ++  ++      K 
Sbjct: 417 GHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGFLRVRDQTKA 476

Query: 299 EKFYKRLLN 307
            K+++ ++N
Sbjct: 477 LKYHREMMN 485



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-- 427
           +  EME   V +NV   NI++ AY ++   +    L++E+  R ++P++ T   L     
Sbjct: 196 ITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYL 255

Query: 428 ----RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYS 483
               +R      G +E  +  G     V   T  ++L  YG        E+V++ ++   
Sbjct: 256 EAKPKRQFVVAEGLIEEMEASGLYPDVV---TFTMLLGAYGHEGLTEQAEQVFNRMKARG 312

Query: 484 REKKRWTYQNLID 496
            +   ++Y  LI+
Sbjct: 313 VQPNSYSYTALIN 325


>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic [Vitis vinifera]
 gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
          Length = 692

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 6/250 (2%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEA   F EM+   + P+   YN ++  YS+  +       L EM++M L P   +Y  
Sbjct: 364 VEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTC 423

Query: 215 LIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           LI AYG+ K   ++  D  L+M K+ G  P   +Y  LI  ++  G  ++    +++M  
Sbjct: 424 LISAYGRQKKMSDMAADAFLRMKKV-GIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKR 482

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  A+LDA+   G    + K +K +L+ +          L + + K   +  
Sbjct: 483 EGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYME 542

Query: 333 LDDLGDDLASRIGRTELVWCLRLL--SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
             D+  +   +IG    V    +L  ++A    H  +  +++EM S  ++ +  T + ++
Sbjct: 543 ARDVIFEFG-KIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMI 601

Query: 391 LAYLKMKDFK 400
            AY++++DFK
Sbjct: 602 YAYVRVRDFK 611



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 127 DMWKNIEKSRINEFNSQKI-----IGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSI 180
           D WK  ++   N      +     I ++ ++G   ++A   FQ M    +K SLE+  ++
Sbjct: 260 DAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGAL 319

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I  +   G  NEAL+  +EM++  +S  +  Y+ L+ AY K    +E +     MK  G 
Sbjct: 320 IKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGV 379

Query: 241 SPDHITYNLLIQEFA 255
            P   TYN+L+  ++
Sbjct: 380 MPTSATYNILMDAYS 394



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 2/157 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A  AF+ M+   +KPS+E Y +++  + + G     +     M    +     T+
Sbjct: 468 GWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTF 527

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + L+  + K   Y E  D+  +  K+ G  P  +TYN+L+  +A  G   R+    K M 
Sbjct: 528 NILLDGFAKQGHYMEARDVIFEFGKI-GFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMT 586

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +  +   S T   ++ AY+      +   ++K+++ S
Sbjct: 587 SLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKS 623



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 118 RSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R+     +  +WK      IE +R+  FN   ++    ++G   EA     E      +P
Sbjct: 501 RAGDTQTLMKIWKLMLSDKIEGTRVT-FNI--LLDGFAKQGHYMEARDVIFEFGKIGFQP 557

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++  YN +++ Y++ G+ +     L EM  +NL P S TY  +I AY + + +       
Sbjct: 558 TVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYH 617

Query: 233 KMMKLDGCSPDHITYNLL 250
           K M   G  PD  +Y  L
Sbjct: 618 KQMVKSGQVPDPQSYQKL 635


>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
          Length = 450

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 3/224 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I       R  +IP + D    +   + N      II    + G++EE   A   M
Sbjct: 163 FSVLINCCSKLRRFDRIPAILDEMSYL-GLQCNAVIHNAIIDGYGKAGMLEEMENALTSM 221

Query: 166 -EGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            E     P +   NSII  Y   G + +E   + +E + M + P + T++ +I++YG  K
Sbjct: 222 LEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAK 281

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           M+D++   LK MK    SP  +T+N++I+ F  AG +++ME  ++ M  + +     T  
Sbjct: 282 MHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYC 341

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++++ Y   G LDK+    ++  N+   L       + + Y K+
Sbjct: 342 SLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 147/353 (41%), Gaps = 23/353 (6%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEA 158
           W K       R L    + RQ      ++K +   R+         ++G     GL++EA
Sbjct: 84  WYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDEA 143

Query: 159 VRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +   ++M+G A  KP    ++ +I+  SK+ +F+     L+EM  + L   +  ++ +I 
Sbjct: 144 LATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIID 203

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRM 275
            YGK  M +E++  L  M  DG S PD  T N +I  +   G  +  ME  Y       +
Sbjct: 204 GYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGV 263

Query: 276 HLRSSTMVAILDAYMNFGMLDKME---KFYKRLLNSRTPLKEDLV----RKLAEVYIKNY 328
              + T   ++ +Y N  M DKM    K+ K+   S T +  +++     +   +    Y
Sbjct: 264 EPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEY 323

Query: 329 MFSRLDDLGDDLASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
            F  +   G      +    + +C  +   S A  L    +  ++R+ E+  V  +    
Sbjct: 324 YFRLMKIQG------VKPNPITYCSLVNGYSKAGFLDK--VPGIIRQTENTDVVLDTPFF 375

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI-GFDGTGAL 438
           N ++ AY K  D K +  +L  +  +  KPD VT   +  A  + G D    L
Sbjct: 376 NCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANL 428


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 40/306 (13%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VFD  +   +  +  FN+  +I  +C    ++     ++EM    +KP +  Y ++I G
Sbjct: 207 KVFDEMRRSVQPTVVTFNT--LISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKG 264

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + + G+   A+   NEM++  ++P +  +  LI A+ K    +      + M++ G  PD
Sbjct: 265 FCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD 324

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            + YN L+     A  LK  E   + M    +     T   ++D     G LD       
Sbjct: 325 LVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLD------- 377

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
                   +  D+ +K+AE  +       LD+        +  T L+  L         +
Sbjct: 378 --------MAMDIKQKMAEKEVS------LDE--------VTYTALISGLS-------KA 408

Query: 364 HRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            R +D+  V+REM  A +  + TT  +++ A+ +  D K    LL E+  +  KP +VT 
Sbjct: 409 GRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTY 468

Query: 422 GILYDA 427
            ++ + 
Sbjct: 469 NVIMNG 474



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 120/313 (38%), Gaps = 36/313 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+R +  V  ++K +    +    +    +I   C  G ME AV+ F EM    + P+  
Sbjct: 232 RARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAV 291

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           ++ ++I  + K G  N  +    +M+   + P    Y+ L+    + +     +  ++ M
Sbjct: 292 VFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEM 351

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           K  G  PD +TY  LI      G L       + M  K + L   T  A++      G  
Sbjct: 352 KNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRP 411

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
              E+  + ++              A +   N  ++ + D      +   + ++    +L
Sbjct: 412 VDAERVLREMME-------------AALEPDNTTYTMVID------AFCRKGDVKTGFKL 452

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           L               +EM++   +  V T N+I+    K+   K+  +LL  +    V 
Sbjct: 453 L---------------KEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVS 497

Query: 416 PDIVTIGILYDAR 428
           PD +T  IL D +
Sbjct: 498 PDDITYNILLDGQ 510



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +G ++   +  +EM+    KP +  YN I++G  K+G+   A + L+ M  + 
Sbjct: 436 VIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIG 495

Query: 205 LSPQSDTYDGLIQA---YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +SP   TY+ L+     +GK    +E++    M+      PD   Y  LI E A
Sbjct: 496 VSPDDITYNILLDGQCKHGKVANSEELESSKGMV------PDFAVYTSLISELA 543


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 9/274 (3%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE--MNLSPQSDTYDG 214
           +A   F+ M+G  + P     N +IH   K+G+  +A+  LN M+E  +  SP   TY  
Sbjct: 276 KATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTS 335

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I +Y      +       MM  +G  P+ ++YN L+  +A  G+     G +K  L K+
Sbjct: 336 IIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFK--LLKQ 393

Query: 275 MHLRSSTM--VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             LR   +    +L+AY      +K  + +  +  +     +     L + Y    MF  
Sbjct: 394 NGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKE 453

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIIL 390
              L  ++  + G    V  +  L  AC    +   ID+V+   +   +  N+   N  +
Sbjct: 454 AISLLHEM-EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGI 512

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +YL   D++    L + +   +V PD VT  IL
Sbjct: 513 GSYLSFGDYEKALKLYATMMASNVNPDAVTYNIL 546



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E+A   F EM   + KP+   YN++I  Y   G F EA+  L+EM++  + P   +   L
Sbjct: 417 EKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTL 476

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + A G+ +   +ID  L+  K  G   + + YN  I  +   G  ++    Y +M+   +
Sbjct: 477 LAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNV 536

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +  + T   ++      G   +  KF++ +++ R PL +++   L   Y+K
Sbjct: 537 NPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVK 587



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 20/317 (6%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VFDM    E  + N  +   ++G     G+  EA   F+ ++   L+P +  Y ++++ Y
Sbjct: 352 VFDMMV-AEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAY 410

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            +  +  +A    NEM++ +  P   +Y+ LI AYG   M+ E    L  M+ DG  PD 
Sbjct: 411 GRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDV 470

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           ++ + L+          +++   ++   + + L      + + +Y++FG  +K  K Y  
Sbjct: 471 VSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYAT 530

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG----------DDLASRIGRTELVWCLR 354
           ++ S        V   A  Y  N + S L  LG          D +  RI  T+ V+   
Sbjct: 531 MMASN-------VNPDAVTY--NILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSL 581

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           + S+         +S    M+++    +V T   ++ AY     +  +  L  E+    +
Sbjct: 582 ICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAI 641

Query: 415 KPDIVTIGILYDARRIG 431
            PD +    L +A   G
Sbjct: 642 LPDAIICSSLMEALNKG 658



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 149/373 (39%), Gaps = 50/373 (13%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGL 154
           G + + +F  +IR +  S        VF   KN E    N      I GM+ +       
Sbjct: 113 GRFARRNFPLLIREMAFSGSLEHAVYVFCWMKNQE----NYCARNDIYGMMIQLHARHNQ 168

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  +IYNS+I+ +++ G +  A+  +++M    + P   TY+ 
Sbjct: 169 VDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNN 228

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           ++ A G    + + +++C KM++ +G  PD +T+N+++  F       +  G ++ M   
Sbjct: 229 VVNACGAAGNWKKALELCKKMIR-NGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGA 287

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--------- 324
            +   + T+  ++   +  G           +   R     D+V   + ++         
Sbjct: 288 NIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVE 347

Query: 325 -------------IKNYMFSRLDDLGDDLASRIGRTELVWCLRLL----------SHACL 361
                        +K  + S    LG   AS    TE     +LL          S+  L
Sbjct: 348 NCKAVFDMMVAEGVKPNIVSYNALLG-AYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTL 406

Query: 362 LSHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           L+  G  +       V  EM     + N  + N ++ AY     FK    LL E+    +
Sbjct: 407 LNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 466

Query: 415 KPDIVTIGILYDA 427
            PD+V+I  L  A
Sbjct: 467 PPDVVSISTLLAA 479


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           EK RI+      +I +    G  +  +  ++EM+   +KP+L IYN+++    +  +  +
Sbjct: 275 EKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQ 334

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG---CSPDHITYNL 249
           A     EM    L P   TY  L++AYG+ +  ++  +  K MK  G   C PD  T++ 
Sbjct: 335 AKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSS 394

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           LI  ++C+G +   E    +ML          + +++  Y      D++ + + RLL
Sbjct: 395 LITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLL 451



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            L  +AV  F++M  F   P    Y+++I  Y + G  + AL   +  +         T+
Sbjct: 225 SLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTF 284

Query: 213 DGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             LI+ YG   M    D CL +   MK  G  P+ + YN L+     A    + +  YK 
Sbjct: 285 STLIRIYG---MSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKE 341

Query: 270 MLTKRMHLRSSTMVAILDAY 289
           M    +     T  A+L AY
Sbjct: 342 MTNNGLQPSWGTYAALLRAY 361



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 19/223 (8%)

Query: 102 TKDHFWAVIRF-----LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLME 156
           TK + W   R      L+  S   +   +  + ++++     E +  +++  L ++ L +
Sbjct: 85  TKSYIWVNPRSPRASKLRQHSYDARYASLVKIAESLDSCEATEEDVSQVLRCLGDKILEQ 144

Query: 157 EAVRAFQEME---------GF---ALKPSLEI--YNSIIHGYSKIGKFNEALLFLNEMKE 202
           +AV     M          GF    LKPS E+  YN  +  + K    + A    +EM E
Sbjct: 145 DAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLE 204

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             + P + T+  +I       + ++     + M   GC PD +TY+ +I  +  AG +  
Sbjct: 205 RGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDM 264

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
               Y    T++  +   T   ++  Y   G  D     Y+ +
Sbjct: 265 ALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEM 307


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           N +    +I  LC+ G ME A R F ++ +  + KP++  Y  +I GY K GK   A + 
Sbjct: 285 NVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEML 344

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M E  L+P ++TY  LI  + K   +D     +  MKL+G  P+  TYN +I  F  
Sbjct: 345 LGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCK 404

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            G ++      +   ++ +HL   T   ++  +   G +      +K++
Sbjct: 405 KGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQM 453



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C+EG +  A      M    L P+   Y ++IHG+ K G F+ A   +N+MK   
Sbjct: 328 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEG 387

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ +I  + K     E    L+M    G   D +TY +LI E    G +    
Sbjct: 388 FLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCAL 447

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
             +K M  K  H    T   I+  Y
Sbjct: 448 DLFKQMAEKSCHPDIHTYTTIIAMY 472



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 1/175 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G +  A+  F++M   +  P +  Y +II  Y +  +  ++    ++   + L P  
Sbjct: 438 CKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTK 497

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  +I  Y +           + M   GC PD ITY  LI        L+     +++
Sbjct: 498 QTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFET 557

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED-LVRKLAEV 323
           ML K +     T V +   Y     +     F  RL   +     D LVRKL+ V
Sbjct: 558 MLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAHTADALVRKLSTV 612



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 5/189 (2%)

Query: 121 QIPQVFDMWKNI-EKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            I    D++K + EKS   + ++   II M C++  ME++ + F +     L P+ + Y 
Sbjct: 442 HITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYT 501

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I GY ++GK   AL     M +    P S TY  LI +  K    +E     + M   
Sbjct: 502 SMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDK 561

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
              P  +T   L  E+ C      +  ++   L KR   ++ T  A++      G LD  
Sbjct: 562 HLVPCDVTRVTLAYEY-CRRDKITIAVSFLDRLDKRQ--QAHTADALVRKLSTVGNLDAA 618

Query: 299 EKFYKRLLN 307
             F K +L+
Sbjct: 619 SLFLKNVLD 627


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 5/237 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +E A   FQ+M+   ++P    YN++I+G  K+ +  EA   + EM++  
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG 428

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +T++ LI AYG+    ++  + L  M+  G  P+ ++Y  ++  F   G +    
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAV 488

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M  K +   +    AI+DAY+  G  D+     +++ +S  P        L +  
Sbjct: 489 AILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGL 548

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
            K    S  ++L D L +     +++    L+S  C  S+       R +E  K  W
Sbjct: 549 CKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTD-----RALELEKEMW 600



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 31/306 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  L + G   +AV+ F EM   A+ P+   YN++I G+ K G         
Sbjct: 187 NAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLW 246

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P   TY+ L+    +     E    L  M      PD  TY++L    +  
Sbjct: 247 SQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRT 306

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  + M   ++  + K + + + T   +L+     G + K E+  + L+NS         
Sbjct: 307 GDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGL------- 359

Query: 318 RKLAEVYIKNYMFSRLDDLGD---------DLASRIGRTELVWCLRLLSHACLLSHRG-- 366
             L    I N + +    +GD          + SR+ R + +      ++  L++  G  
Sbjct: 360 --LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHI------TYNALINGLGKV 411

Query: 367 -----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
                   +V EME   V  +V T N ++ AY +    +   ++LS++  + +KP++V+ 
Sbjct: 412 ERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSY 471

Query: 422 GILYDA 427
           G + +A
Sbjct: 472 GSIVNA 477



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 129/315 (40%), Gaps = 46/315 (14%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +I  +    ++  LC++G + +A    Q +    L  +  IYN++I+GY +IG    A  
Sbjct: 325 KIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFS 384

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEF 254
              +MK   + P   TY+ LI   GK +   E  D+ ++M K +G +P   T+N LI  +
Sbjct: 385 IFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEK-NGVNPSVETFNTLIDAY 443

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             AG L++       M  K +     +  +I++A+   G          ++L +   L +
Sbjct: 444 GRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNG----------KILEAVAILDD 493

Query: 315 DLVRKL---AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
             ++ +   A+VY  N +         D     G T+  + L                  
Sbjct: 494 MFIKDVLPGAQVY--NAII--------DAYIECGSTDQAFML-----------------A 526

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            +M+S+ V  ++ T N+++    K         LL  L    + PD+++   L  A    
Sbjct: 527 EKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYR 586

Query: 432 FDGTGAL----EMWK 442
            +   AL    EMWK
Sbjct: 587 SNTDRALELEKEMWK 601



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 37/226 (16%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R+ Q+ + F +  ++++   + N  +   I+   C+ G + EAV    +M    + P  
Sbjct: 444 GRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGA 503

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           ++YN+II  Y + G  ++A +   +MK   + P   TY+ LI+   K     E +  L  
Sbjct: 504 QVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDS 563

Query: 235 MKLDGCSPDHITYNLLIQ-----------------------------------EFACAGL 259
           ++  G +PD I+YN LI                                        AG 
Sbjct: 564 LRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGR 623

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +  ME  Y+ ML K +   S     ++DAY   G   K+E   K +
Sbjct: 624 VHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEM 669



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 4/297 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFN 191
           ++R + F   K +      G ++EAV   + M  +G A  P+   YN +I G  K G   
Sbjct: 147 RARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDG-APAPNAFSYNVVIAGLWKAGTDC 205

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +A+   +EM E  + P   TY+ +I  + K    +        M   G  P+ ITYN+L+
Sbjct: 206 DAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLL 265

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                AG +         M +++M     T   + D +   G    M   ++  +     
Sbjct: 266 SGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVK 325

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSV 370
           +       L     K+   S+ +++   L  S + +T +++   +  +  +    G  S+
Sbjct: 326 IGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSI 385

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++M+S  +R +  T N ++    K++       L+ E+    V P + T   L DA
Sbjct: 386 FQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDA 442



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 55/137 (40%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++  + EA      +  + L P +  YN++I         + AL    EM +  
Sbjct: 544 LIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCG 603

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  L  + G      E++   + M      P    YN+++  +A  G   ++E
Sbjct: 604 IKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVE 663

Query: 265 GTYKSMLTKRMHLRSST 281
              K M  K + +   T
Sbjct: 664 ALRKEMSDKGIAVGDYT 680


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 15/284 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G   EA   F  M    +KP++ IY  +IHGY+  G  +E    LN M E  
Sbjct: 314 LLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP    ++ +  AY K  M DE       MK  G SPD + Y  LI      G +    
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAV 433

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV---RKLA 321
             +  M+ + +        +++         +K ++FY  +LN    ++ D+V     L 
Sbjct: 434 LKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ--GIRPDVVFFNTILC 491

Query: 322 EVYIKNYMF--SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME---S 376
            +  K  +    RL DL + + +R G   ++    L+   CL+    ID   + ++   S
Sbjct: 492 NLCTKGQVMKAQRLIDLMERVGTRPG---VISYTTLIGGHCLVGR--IDEAAKSLDVMLS 546

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             ++ +  T N +L  Y +         +  E+    + P +VT
Sbjct: 547 VGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/349 (18%), Positives = 143/349 (40%), Gaps = 15/349 (4%)

Query: 75  QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +A++ L++R+  ++ C   ++ ++          +++   N  R+ +  ++  M  + + 
Sbjct: 147 EAMDILVKRM-PELGCTPDVVSYN---------TLLKGFCNEKRAEEALELLHMMADSQG 196

Query: 135 SRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
                N  +   +I     EG +++A   F EM    ++P++  Y ++I G  K    + 
Sbjct: 197 RSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR 256

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     +M +  + P +DTY+ LI  Y     + E+   L+ M   G  PD  TY  L+ 
Sbjct: 257 AEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLN 316

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G  +     + SM+ K +    +    ++  Y   G L +M      ++ +    
Sbjct: 317 YLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSP 376

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
              +   +   Y K  M      + + +  +    ++V    L+   C L  R  D+V++
Sbjct: 377 DHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLG-RVDDAVLK 435

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             +M +  V  N+   N ++     +  ++  +    E+  + ++PD+V
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+M     +  +  FN+  I+  LC +G + +A R    ME    +P +  Y ++I G+ 
Sbjct: 472 FEMLNQGIRPDVVFFNT--ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHC 529

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
            +G+ +EA   L+ M  + L P   TY+ L+  Y +    D+     + M  +G +P  +
Sbjct: 530 LVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVV 589

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLT 272
           TY+ ++            +  Y +M+T
Sbjct: 590 TYSTILHGLFTTRRFSEAKELYLNMIT 616



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 118/284 (41%), Gaps = 7/284 (2%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           N   +I  LC+ G +++AV  F +M    + P++ ++NS+++G   + K+ +A  F  EM
Sbjct: 415 NYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEM 474

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
               + P    ++ ++          +    + +M+  G  P  I+Y  LI      G +
Sbjct: 475 LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRI 534

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRK 319
                +   ML+  +     T   +L  Y   G +D     ++ +L N  TP        
Sbjct: 535 DEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME---S 376
           L  ++     FS   +L  ++ +  G+   +W   ++ +  L  +  +D   +  +   S
Sbjct: 595 LHGLFTTR-RFSEAKELYLNMITS-GKQWNIWIYNIILNG-LSKNNCVDEAFKLFQSLCS 651

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              +  +TT NI++ A  K    +    L + + +  + PD+ T
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFT 695



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/299 (18%), Positives = 122/299 (40%), Gaps = 27/299 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH----GYSKIGKFNEAL-LFLNE 199
           +IG  C  G +E     F    G  LK    + N +I+    G     +  EA+ + +  
Sbjct: 100 LIGCFCRMGRLEHGFATF----GLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKR 155

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM---KLDGCSPDHITYNLLIQEFAC 256
           M E+  +P   +Y+ L++ +   K  +E    L MM   +   C P+ ++Y ++I  F  
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFT 215

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G + +    +  M+ + +     T   ++D      ++D+ E  ++++++       D 
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--------ID 368
              L   Y+    +  +  + +++++   + +      LL++ C   + G         D
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC---NNGRCREARFLFD 332

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S++R+     ++ NV    I++  Y        +  LL+ +    + PD     I++ A
Sbjct: 333 SMIRK----GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 128/302 (42%), Gaps = 15/302 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N     +++  LC+   + EA+    + M      P +  YN+++ G+    +  EAL
Sbjct: 126 RVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 195 LFLNEMKEM---NLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLL 250
             L+ M +    +  P   +Y  +I  +      D+  ++ L+MM   G  P+ +TY  +
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTV 244

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I     A ++ R EG ++ M+ K +   + T   ++  Y++ G   ++ +  + +  S  
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM--SAH 302

Query: 311 PLKEDLVRKLAEV-YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
            LK D     + + Y+ N    R      D   R G    V    +L H    + +G  S
Sbjct: 303 GLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHG--YATKGALS 360

Query: 370 VVREMESAKVRWNVTTA----NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
            + ++ +  V   ++      NII  AY K         + +++  + + PD+V  G L 
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALI 420

Query: 426 DA 427
           DA
Sbjct: 421 DA 422


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I + C++GL  EA+    +ME   +   +  YNS+I+G+ K GK  EA+    E
Sbjct: 236 FTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGE 295

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +K+    P   TY  LI  Y K   ++E     +MM   G  P  +TYN ++++    G 
Sbjct: 296 IKDA--IPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGR 353

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           ++        M  +++   S T   +++AY   G L+   KF  ++L +
Sbjct: 354 IRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEA 402



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 141/355 (39%), Gaps = 50/355 (14%)

Query: 97  HDGDWTKDHF--WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL 154
           HD      H   W VI + K S  +    QVF+   ++   + +      ++  L ++G+
Sbjct: 123 HDDPEVNSHVLSWIVIHYAK-SKMTHDAVQVFEQ-MSLCNLKPHLHACTVLMNSLLKDGI 180

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
                + ++ M    + P++ +YN +IH  SK      A   LNEM+   + P   TY+ 
Sbjct: 181 TSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNT 240

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK---RMEGTYKSML 271
           LI  Y K  ++ E       M+ +G + D ++YN LI  F   G ++   RM G  K  +
Sbjct: 241 LIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAI 300

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              +     T   ++D Y       K  +F + L      L+E +V K     +  Y  S
Sbjct: 301 PNHV-----TYTTLIDGYC------KANEFEEAL-----RLREMMVAKGLYPGVVTYN-S 343

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            L  L  D     GR                  R  + ++ EM   KV+ +  T N ++ 
Sbjct: 344 ILRKLCSD-----GRI-----------------RDANKLLHEMSERKVQADSVTCNTLIN 381

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF 446
           AY K+ D        +++    + P+  T    Y A   GF  T  LE  K + F
Sbjct: 382 AYCKIGDLNSALKFKTKMLEAGLTPNSFT----YKALIHGFCKTSELESAKELLF 432



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC +G + +A +   EM    ++      N++I+ Y KIG  N AL F  +M E  
Sbjct: 344 ILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAG 403

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L+P S TY  LI  + K    +     L  M   G SP++ TY+ ++  + 
Sbjct: 404 LTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYC 454



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 41/95 (43%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K + +      +I   C+ G +  A++   +M    L P+   Y ++IHG+ K  +   A
Sbjct: 368 KVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESA 427

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              L  M +   SP   TY  ++ +Y K    D +
Sbjct: 428 KELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAV 462


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  + + G++E+A +  + ME    KP   IY  +I+G+ K+G F  A++ L  
Sbjct: 209 FTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGR 268

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           MKE   +P +  +D +I    K   +DE  + LK+    GC PD +TY  L QE  C
Sbjct: 269 MKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKC 325



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 166/421 (39%), Gaps = 45/421 (10%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEE 152
           L+H G     H + VI      ++ ++   VF M +++  +    ++  +  ++ + C+ 
Sbjct: 92  LRHQGQEFPAHIYNVI--FGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKA 149

Query: 153 GLMEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             +++AVR  + M    L+ ++    YN +I G  K  + +EAL     M+  N+     
Sbjct: 150 LAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIF 209

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ +I+   K  M ++ +  LK M+   C PD   Y  +I  F   G  K        +
Sbjct: 210 TYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKN-----AVV 264

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK------EDLVRKLAE-- 322
           L  RM        A++   +  G L K  KF + L+  +  ++      E    KLA+  
Sbjct: 265 LLGRMKEAGYAPDAVVFDCI-IGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQER 323

Query: 323 -VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME----SA 377
                N ++SRL         + G+ E          AC L    + +  RE E      
Sbjct: 324 KCPATNLLYSRL----MKCLCKTGKVE---------AACQLLE-DLTNGSRESEQLLGGD 369

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI-LYDARRIGF--DG 434
             + +V   +I++ A   M       V++  +  R VKPD V   I LY   R     D 
Sbjct: 370 GCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDA 429

Query: 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
              LEM    G     +  NT  L+ A+   G     C  ++  +     E   +TY  L
Sbjct: 430 CRLLEMMVEAGCYPDVISYNT--LLFALCSAGQEEEAC-RLFQVMVETGIEPNVFTYTQL 486

Query: 495 I 495
           I
Sbjct: 487 I 487



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 41/103 (39%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C    +++A R  + M      P +  YN+++      G+  EA      M E  + P 
Sbjct: 420 FCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPN 479

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             TY  LI+A    K  +        MKL  C PD  TY  LI
Sbjct: 480 VFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALI 522



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G+ +E     + ME   +KP   +Y   ++ + +  + ++A   L  M E  
Sbjct: 381 VIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAG 440

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ A       +E     ++M   G  P+  TY  LI+        K++E
Sbjct: 441 CYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCST---KKLE 497

Query: 265 GT 266
           G 
Sbjct: 498 GA 499


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 141/337 (41%), Gaps = 23/337 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +  V++ L  + R   + ++F   M KN      NE     ++   C  G++E A++  +
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMP---NEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M G     +  + N +I+   K G+ ++A  FLN M     SP + +Y  +++   + +
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++    LK M    C P+ +T+N  I      GL+++     + M      +   T  
Sbjct: 370 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 429

Query: 284 AILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
           A+++ +   G +D  +E FY       T     L+  L           RLD   + LA 
Sbjct: 430 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA-------ERLDAAAELLAE 482

Query: 343 RIGR---TELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            + +     +V    L+S  C   L    I+ V + ME      N+ T N +L    K  
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITKDC 541

Query: 398 DFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
           + +    LL  L +  V PDIVT    IG+L    R+
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 58/114 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C+     +A+    EM      P++  YN II+G  + G+ ++A  FLN +      P 
Sbjct: 190 VCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPD 249

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           + +Y  +++     K +++++     M    C P+ +T+++L++ F   G+++R
Sbjct: 250 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +   + ++N  R  +      + +  E+S   ++ F    ++   C  G ++ A R    
Sbjct: 79  YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIAS 138

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    + P    Y  II G    G+  EAL  L++M      P   TY  L++A  K   
Sbjct: 139 M---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + +    L  M+  GC+P+ +TYN++I
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVII 222



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 2/280 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C EG +++A      +  +  +P    Y +++ G     ++ +      EM E N
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+D L++ + +  M +     L+ M   GC+ +    N++I      G +    
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               +M +      + +   +L         +  ++  K ++    P  E        + 
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            +  +  +   L + ++       +V    L++  C+     +DS +    S   + N  
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR--VDSALELFYSMPCKPNTI 458

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T   +L      +       LL+E+  +   P++VT  +L
Sbjct: 459 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 498



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +    II  LC+ G + EA+    +M     +PS+  Y  ++    K   F +A+  L
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+    +P   TY+ +I    +    D+    L  +   G  PD ++Y  +++    A
Sbjct: 204 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 263

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              + +E  +  M+ K       T   ++  +   GM+++
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C++GLM+EA+   ++M      P+L  YN+++ G +K     EAL  L+ +    
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLI 251
           +SP   TY  +I   G     D ++  +KM  +    G  P  + YN ++
Sbjct: 558 VSPDIVTYSSII---GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+     +    + P +  Y+SII   S+  +  EA+   + ++++ + P++  Y+ +
Sbjct: 544 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 603

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           + A  K    D        M  +GC P+ +TY  LI+  A    LK      + + ++
Sbjct: 604 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             IIG+L  E  +EEA++ F  ++   ++P   IYN I+    K    + A+ F   M  
Sbjct: 566 SSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 625

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
               P   TY  LI+         E    L+ +    CS   +  NLL
Sbjct: 626 NGCMPNELTYITLIEGLANEDFLKETRDLLREL----CSRGVLNKNLL 669


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 139/320 (43%), Gaps = 15/320 (4%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +IG+L   G + +A+  F+EME   + P   IY  +I G+ + G  ++AL   +EM  
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                   TY+  +    K KM+ + DM    M   G  PD  T+  LI+ +   G + +
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDK 520

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
               +++M+   +     T   ++D +   G + + ++ +  ++             +  
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVREMESA 377
            +  + +     +L D +  +  R  LV C  L+   C    R  D       + +M S 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC----RSGDMPKAYEYLSKMISN 636

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            +  +  + N ++  YLK  + +   +L++E+  R ++ +I+T  ++ +    GF   G 
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILN----GFCAEGK 692

Query: 438 LEMWKRIGFLFKTVEINTDP 457
           ++  +++  L K +EI  +P
Sbjct: 693 MQEAEQV--LRKMIEIGINP 710



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 126/304 (41%), Gaps = 23/304 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C EGL+EEA +         ++P L  YN+I++G  KIGK++ A   L EM ++ 
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLG 357

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P + TY+ L+    +     E       M   G  PD ++++ LI      G+L R  
Sbjct: 358 LTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI------GVLARNG 411

Query: 265 GTYKSMLTKRMHLRSSTM------VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
             Y++++  R   RS  +        ++D +   G L    K    +L     +      
Sbjct: 412 HLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYN 471

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                  K  MF+  D L +++  R    +      L+   C      +D  +   E A 
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC--KDGNMDKALNLFE-AM 528

Query: 379 VRWNV----TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           VR N+     T N ++  + K  +    + L  ++  + + PD ++ G + +    GF  
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN----GFCS 584

Query: 435 TGAL 438
           +G L
Sbjct: 585 SGLL 588



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++ ++ +  ++W ++ +  I  +  +   ++   C  GL+ EA+    +M    ++P+L 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N++I GY + G   +A  +L++M    + P S +Y+ LI  Y K    ++  + +  M
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM 668

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   + ITYNL++  F   G ++  E   + M+   ++   +T  ++++ +++   +
Sbjct: 669 EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNM 728

Query: 296 DKMEKFYKRLL 306
            +  +F+  +L
Sbjct: 729 KEAFRFHDEML 739



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 41/416 (9%)

Query: 40  LIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDG 99
           ++   IS C    +  L Y       LLV +Y + + L        ++ S   QIL+  G
Sbjct: 172 VVESLISTCFYFGSVGLIYD------LLVRTYVQAKKL--------REGSEAFQILRRKG 217

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEE 157
                   A  + L    R+  +   ++++  + +  I  N +    ++  LC++   E 
Sbjct: 218 --VSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFEN 275

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            +    +MEG  +   +  YN++I+ Y + G   EA   LN      + P   TY+ ++ 
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 218 AYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
              K   YD   D+ ++M++L G +P+  TYN L+ E      +   +  +  M      
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQL-GLTPNAATYNTLLVEICRRDNILEAQEIFDEM------ 388

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK------LAEVYIKNYMF 330
            R   +  ++      G+L +    Y+ L++ R   +  +V        L + + +N   
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANII 389
           S    + D++ +R    ++V     L+  C        D +  EM    +  +  T   +
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMW 441
           +  Y K  +      L   +   ++KPD VT   L D    GF   G    A E+W
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID----GFCKAGEMGRAKELW 560



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 3/155 (1%)

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEE 157
           D   DH  +    L     S  +P+  ++    +EK  R N      +I   C  G M +
Sbjct: 567 DIIPDHI-SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPK 625

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A     +M    + P    YN++I GY K     +A + +NEM++  L     TY+ ++ 
Sbjct: 626 AYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILN 685

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +       E +  L+ M   G +PD  TY+ LI 
Sbjct: 686 GFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +   + + F +   +EK   + N      I+   C EG M+EA +  ++M    + P   
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGA 713

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            Y+S+I+G+       EA  F +EM +  L P
Sbjct: 714 TYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 104/266 (39%), Gaps = 40/266 (15%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F +++  L    R+     +FD  +       + +    +I   C+  ++++A   F+EM
Sbjct: 179 FNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEM 238

Query: 166 EGFALKPSLEIYNSIIHGYSKIGK------------------------------------ 189
           E ++  P +  YN+II G  + GK                                    
Sbjct: 239 ELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQ 298

Query: 190 -FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITY 247
             +EALL  +EM    L P + TY+ LI+   +   YDEI    +        SPD  T+
Sbjct: 299 EIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTF 358

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI+    AG L      ++ ML  ++H  S++   ++         DK E  +  L  
Sbjct: 359 NILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFE 418

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRL 333
               L ++  + LA  Y  N MF  L
Sbjct: 419 KEVLLGKNECKPLAAAY--NLMFEYL 442



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--------FNSQKIIGMLCEEGLMEE 157
           F+ ++ FL    R+R +    +   +IEK R N         FNS  +I      GL +E
Sbjct: 106 FFLMLEFL---GRARNLNAARNFLFSIEK-RSNGCVKLQDRYFNS--LIRSYGNAGLFQE 159

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLI 216
           +V  FQ M+   + PS+  +NS++    K G+   A    +EM+    ++P S T++ LI
Sbjct: 160 SVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLI 219

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             + K  M D+     K M+L  C+PD +TYN +I     AG +K        ML K
Sbjct: 220 SGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKK 276



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 43/167 (25%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE----------------- 192
           C +  ++EA+  F EM    LKP+   YN++I G S+  +++E                 
Sbjct: 295 CMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPD 354

Query: 193 -------------------ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
                              A+    EM  M L P S +Y  LI+       +D+ +    
Sbjct: 355 ACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFN 414

Query: 234 -------MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
                  ++  + C P    YNL+ +     G  K+ E  ++ ++ +
Sbjct: 415 ELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKR 461


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 2/189 (1%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +RQ      + K++  S I  N+F    +I    + G + +A+R F +M+    KP +  
Sbjct: 337 ARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVT 396

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +NS+I  + + G   EAL  L +M+E    P   TY+ ++ A G +  + E+ + L  M+
Sbjct: 397 WNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMR 456

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  P+ +TY  L+  +  +   +      K M ++ +   +S   A+ ++Y   G+ +
Sbjct: 457 FKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCE 516

Query: 297 KMEKFYKRL 305
           +  + +K +
Sbjct: 517 QAMEVFKSM 525



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 40/238 (16%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++PQ    +  ++K   + +      +I   C  GL+ EA+   ++M+     PSL  YN
Sbjct: 374 RLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYN 433

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            I++      ++ E  L L+EM+   L P   TY  L+ +YG  K Y E    LK MK  
Sbjct: 434 IILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQ 493

Query: 239 GCSPDHITY-----------------------------------NLLIQEFACAGLLKRM 263
           G  P    Y                                   NLLI  F  AG     
Sbjct: 494 GLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEA 553

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TP--LKEDLVR 318
              +  +L   M     T   ++ A +    LD++   Y++++ +  TP  + +D++R
Sbjct: 554 FSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDDMAKDMLR 611



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 134/340 (39%), Gaps = 45/340 (13%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  L +E  +EEA+  F +++   + P    YN+I+   ++  +   AL  +N+M+    
Sbjct: 85  ITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGF 144

Query: 206 SPQSDTYDGLIQAYGK-----------------------YKMYDEI----------DMCL 232
            P +  Y  + QA  K                        K+Y+++          D   
Sbjct: 145 QPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAF 204

Query: 233 KMMKL-DGCS--PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           + M L   C   PD  +Y+ LI+       L   E  Y  M +K   +   T+ A+L AY
Sbjct: 205 QYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAY 264

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL----ASRIG 345
               +L+++EK  +   ++   L       L + Y +     RLD             + 
Sbjct: 265 TRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRA---GRLDQAKAAFHNMKVENVP 321

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
               ++   ++++       G   ++++M ++ ++ N    NI++  Y K          
Sbjct: 322 ANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRT 381

Query: 406 LSELPTRHVKPDIVTIGILYDAR-RIGFDGTGALEMWKRI 444
            +++     KPD+VT   L +A  R G   T AL++ K++
Sbjct: 382 FAQMDKEGFKPDVVTWNSLIEAHCRAGLI-TEALDLLKQM 420



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 126/288 (43%), Gaps = 9/288 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G  ++A +    M+   L P +  Y+S+I     + + ++A     EMK  +
Sbjct: 190 VINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKS 249

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 T + L+ AY +  + ++++  ++  +  G      +Y LLI  ++ AG L + +
Sbjct: 250 YKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAK 309

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M  + +   +     ++ AY N    D   +  K +  S     + +   L + Y
Sbjct: 310 AAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTY 369

Query: 325 IKNYMFSRLDDLGDDLAS--RIG-RTELVWCLRLLSHACL--LSHRGIDSVVREMESAKV 379
            K   F RL       A   + G + ++V    L+   C   L    +D ++++M+  + 
Sbjct: 370 GK---FGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALD-LLKQMQEREC 425

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++ T NIIL A      +K + +LL E+  + + P++VT   L D+
Sbjct: 426 VPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDS 473



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 41/338 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   +R   + QV  + ++ E +  +++ F+   +I      G +++A  AF  M+   
Sbjct: 260 LLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVEN 319

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +  +  IY+ ++  Y    +++  +  L +M   N+ P    ++ LI  YGK+    +  
Sbjct: 320 VPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAM 379

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRMEG--------TYKSMLTK- 273
                M  +G  PD +T+N LI+    AG       LLK+M+         TY  +L   
Sbjct: 380 RTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNAL 439

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
             H R   M  +LD  M F  LD     Y  L++S    K    R+ +E Y+K      L
Sbjct: 440 GWHNRWKEMALLLDE-MRFKGLDPNVVTYTTLVDSYGTSKR--YREASE-YLKQMKSQGL 495

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKVRWNVTTANII 389
                        +  V+C    S+A     RG+      V + ME   V  N++  N++
Sbjct: 496 QP-----------STSVYCALANSYA----KRGLCEQAMEVFKSMEKDGVELNLSMLNLL 540

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + A+     +     +   +    + PD+VT   L  A
Sbjct: 541 INAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKA 578



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +IN      ++     + L+E+  +  Q+ E   LK S   Y  +I  YS+ G+ ++A  
Sbjct: 251 KINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKA 310

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + MK  N+   +  Y  L+ AY   + +D     LK M      P+   +N+LI  + 
Sbjct: 311 AFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYG 370

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             G L +   T+  M  +       T  ++++A+   G++ +     K++
Sbjct: 371 KFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQM 420


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 8/247 (3%)

Query: 59  HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR 118
           H+T+    ++E    H+ +  ++   N       QI++     + + +  + + L     
Sbjct: 120 HTTETCNYVLEMLRAHRRVEDMVVVFNLMQK---QIIKR----SINTYLTIFKVLYIRGG 172

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            R+ P   +  + +    +N ++   +I +L + G   EA++ ++ M    +KPSL+ Y+
Sbjct: 173 LREAPVALEKMRKV-GFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYS 231

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++    K       +  L EM+ + L P   T+   I+  G+    DE    LK M   
Sbjct: 232 ALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDA 291

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC PD +TY +LI     AG L   +  +  M          T + +LD + + G LD +
Sbjct: 292 GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAI 351

Query: 299 EKFYKRL 305
           ++F+  +
Sbjct: 352 KEFWSEM 358



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 69/141 (48%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++  LC  G +++A+  F+E++   L P L  YN +I+G  +  +  EAL   +EM+   
Sbjct: 969  MVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRG 1028

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            ++P   TY+ LI   G   M +E     + ++L G  P+  TYN LI+  + +G   R  
Sbjct: 1029 ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAY 1088

Query: 265  GTYKSMLTKRMHLRSSTMVAI 285
              YK M+       + T   +
Sbjct: 1089 AVYKKMMVGGCRPNTGTFAQL 1109



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 144/343 (41%), Gaps = 28/343 (8%)

Query: 93   QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI--IGMLC 150
            + + H GD     FW     +       +I Q     +++  + I E +S  I  +  LC
Sbjct: 706  EFVHHVGDHADGSFWE--DLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLC 763

Query: 151  EEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            + G   +A   F ++ + F + PSLE YNS+I G  K      A     +MK    +P  
Sbjct: 764  KHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDV 823

Query: 210  DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             TY+  + A GK     E+    + M   GC P+ IT+N++I     +  L +    Y  
Sbjct: 824  FTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYD 883

Query: 270  MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAE 322
            +++        T   ++D  +  G L++ ++F++ +L+       PL   L+    K  +
Sbjct: 884  LMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGD 943

Query: 323  VYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
            V     +F R+  + +  DL S    + +V CL      C++    +D  +   E  K+ 
Sbjct: 944  VETACELFRRMVKEGIRPDLKS---YSIMVDCL------CMVGK--VDDALHYFEELKLS 992

Query: 381  W---NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                ++   N+++    + +  +    L  E+  R + PD+ T
Sbjct: 993  GLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYT 1035



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 74/156 (47%)

Query: 151  EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
            ++G +E A   F+ M    ++P L+ Y+ ++     +GK ++AL +  E+K   L P   
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999

Query: 211  TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
             Y+ +I   G+ +  +E       M+  G +PD  TYN LI     AG+++     Y+ +
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 271  LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              K +     T  A++  +   G  D+    YK+++
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMM 1095



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E+G +EEA   F  ++   L P    YN ++  Y K G+ ++A+  L+EM+E    P+
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPE 541

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
               + LI    K    DE     + MK    +P  +TYN L+      G ++     +K
Sbjct: 542 VVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFK 601

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            M+       + +   +LD     G +D   K   R+
Sbjct: 602 GMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRM 638



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 73/155 (47%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A++ F++M+   + P++   N+ ++  ++ G+  EA  F N +K+  L+P + TY+ L+
Sbjct: 455 KAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILM 514

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           + YGK    D+    L  M+ +GC P+ +  N LI     A  +      ++ M   ++ 
Sbjct: 515 RCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLA 574

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
               T   +L      G + +    +K ++    P
Sbjct: 575 PTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCP 609



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 46/325 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++EA      M+   + P+L  YN++I G  ++ + +EAL   N M+ + 
Sbjct: 373 LIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L   + TY   I  YGK     +     + MK +G  P+ +  N  +   A  G L+  +
Sbjct: 433 LETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAK 492

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEV 323
             +  +    +   + T   ++  Y   G +D   K    +  N   P          EV
Sbjct: 493 EFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDP----------EV 542

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            I N +         D   +  R +  W                  + + M+  K+   V
Sbjct: 543 VIINSLI--------DTLYKADRVDEAW-----------------KMFQRMKEMKLAPTV 577

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T N +L    K    +    L   +      P+ ++   L D      +   AL+M   
Sbjct: 578 VTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKM--- 634

Query: 444 IGFLFKTVEINTDPLVL----AVYG 464
              LF+  E+N  P VL     +YG
Sbjct: 635 ---LFRMTEMNCFPDVLTYNTVIYG 656



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA + FQ M+   L P++  YN+++ G  K G+  EA      M   +  P + +++ 
Sbjct: 558 VDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNT 617

Query: 215 LIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           L+    K     E+D+ LKM   M    C PD +TYN +I      GL+K     Y   L
Sbjct: 618 LLDCLCKN---GEVDLALKMLFRMTEMNCFPDVLTYNTVIY-----GLIKENRVNYAFWL 669

Query: 272 TKRM 275
             +M
Sbjct: 670 FHQM 673



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 2/156 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            + R I  V  + + +E    R N +     I +L   G ++EA    + M+     P +
Sbjct: 238 GKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDV 297

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y  +I      GK N A     +MK  +  P   TY  L+  +  +   D I      
Sbjct: 298 VTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSE 357

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           M+ DG  PD +T+ +LI      G +    GT   M
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM 393


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 123/289 (42%), Gaps = 13/289 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG++ EA   F+ M     +P+   YN+++ GY    + +EA   L+ M +  
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   +Y+ LI  Y K +  DE    L  M     +PD +TY+ L+Q     G  +   
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE-- 322
             +K M +  +     T   +LD     G LD+  K  K +  S+      L   L E  
Sbjct: 428 NLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGM 487

Query: 323 -----VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
                + +   +FS+L    D +   I RT  +    LL     LS    + + R+ME  
Sbjct: 488 FIAGKLEVAKELFSKL--FADGIQPTI-RTYTIMIKGLLKEG--LSDEAYE-LFRKMEDD 541

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
               N  + N+I+  +L+ +D      L+ E+  +    D  T  +L D
Sbjct: 542 GFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++ L+ +A+    EM    + P +  Y++I+HG+  +G  NEA +  NEM   N
Sbjct: 238 IIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRN 297

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + T+  L+    K  M  E     + M   G  P+  TYN L+  +     +   +
Sbjct: 298 VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQ 357

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKL 320
                M+ K       +   +++ Y     LD+ +     +    L   T     L++ L
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESA 377
            +V           +L  ++ S     +L+    LL   C   H  +D    +++ M+ +
Sbjct: 418 CQVGRPQEAL----NLFKEMCSSGLLPDLMTYSTLLDGLC--KHGHLDEALKLLKSMQES 471

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           K+  ++   NI++         +  + L S+L    ++P I T  I+
Sbjct: 472 KIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIM 518



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 36/285 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I   C EG ++EAV  F EM     +P +  Y+++I+G  K G  + AL  L +
Sbjct: 165 FNT--LINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRK 222

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E    P    Y  +I +  K  + ++    L  M   G  PD +TY+ ++  F   G 
Sbjct: 223 MEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L      +  M+ + +   + T   ++D     GM+ +    +           E + +K
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF-----------EAMTKK 331

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
            AE     Y ++ L D G  L +++   + V          ++  +G   VV        
Sbjct: 332 GAEP--NAYTYNALMD-GYCLNNQMDEAQKVL--------DIMVDKGCAPVVH------- 373

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                + NI++  Y K +     + LL E+  + + PD VT   L
Sbjct: 374 -----SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL 413


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  V++ L  S R +++ ++F +M  N  K   +E     I+  LC++GL++ A++    
Sbjct: 270 YTPVLKSLCGSERWKEVEELFAEMASN--KCAPDEVTFNTIVTSLCQQGLVDRAIKVVDH 327

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P +  Y+SI+ G   +G+ ++A+  L+ +K     P +  Y  +++     + 
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           ++  +  +  M    C PD +T+N +I      GL+ R     + M     +    T  +
Sbjct: 388 WEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNS 447

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I+D   N   +D   +    L
Sbjct: 448 IIDGLCNERCIDDAMELLSNL 468



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 1/174 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     +I  LC++GL++ A++  ++M      P +  YNSII G       ++A+  L
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELL 465

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + ++     P   T++ L++       +++ +  +  M    C PD  T+N +I      
Sbjct: 466 SNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQK 525

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           GLL +   T K M         ST   ++DA +  G   +  K    + N  TP
Sbjct: 526 GLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG-TP 578



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I  LC  G + +A+  F +M      PS+  Y+ ++    K   + +A++ L
Sbjct: 161 DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLL 220

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+     P   TY+ LI A       DE    L  +   GC PD +TY  +++    +
Sbjct: 221 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGS 280

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              K +E  +  M + +      T   I+ +    G++D+  K    +
Sbjct: 281 ERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHM 328



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 8/274 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +E+A R    + G    P    +N +I      G+  +AL   ++M     SP  
Sbjct: 141 CRAGRIEDARRL---ISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSV 197

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+ A  K   Y +  + L  M+  GC PD +TYN+LI      G +         
Sbjct: 198 VTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSD 257

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           + +      + T   +L +        ++E+ +  + +++    E     +     +  +
Sbjct: 258 LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGL 317

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTA 386
             R   + D ++      ++V    +L   C +    +D  V     ++S   + +    
Sbjct: 318 VDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGR--VDDAVELLSRLKSYGCKPDTIAY 375

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             +L     ++ ++H   L++E+      PD VT
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVT 409



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  + + G MEEA+   + M    L P    Y S+ +G  +    + A+  L  +++M 
Sbjct: 586 VISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMG 645

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           LSP +  Y+ ++  + +    D    C   M   GC PD  TY +L++  A
Sbjct: 646 LSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALA 696



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     ++  L + G  +EA++    M      P L  YN++I   +K GK  EAL  L
Sbjct: 546 NQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISNITKAGKMEEALDLL 603

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM-KLD--GCSPDHITYNLLIQEF 254
             M    LSP + TY  L  AYG  +  D  D  ++M+ +L   G SPD   YN ++  F
Sbjct: 604 RVMVSNGLSPDTITYRSL--AYGICR-EDGTDRAIRMLCRLQDMGLSPDATFYNDILLGF 660

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                       +  M++       ST + +L+A     +LD+ ++    L +
Sbjct: 661 CQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCS 713



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 99/287 (34%), Gaps = 48/287 (16%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C EG ++EA+    ++     KP    Y  ++       ++ E      EM    
Sbjct: 238 LINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNK 297

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG------ 258
            +P   T++ ++ +  +  + D     +  M   GC PD +TY+ ++      G      
Sbjct: 298 CAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAV 357

Query: 259 -LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            LL R+    KS   K   +  +T   +L    +    +  E+    ++ S  P  E   
Sbjct: 358 ELLSRL----KSYGCKPDTIAYTT---VLKGLCSIEQWEHAEELMAEMVCSDCPPDE--- 407

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
                    N + + L   G                        L  R I  VV +M   
Sbjct: 408 ------VTFNTVIASLCQKG------------------------LVDRAI-KVVEQMSEN 436

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               ++ T N I+      +       LLS L +   KPDIVT   L
Sbjct: 437 GCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTL 483



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 59/147 (40%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC     E A     EM      P    +N++I    + G  + A+  + +M E   +P 
Sbjct: 382 LCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPD 441

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ +I      +  D+    L  ++  GC PD +T+N L++        +  E    
Sbjct: 442 IVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMV 501

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGML 295
           +M+       ++T   ++ +    G+L
Sbjct: 502 NMMHSDCPPDATTFNTVITSLCQKGLL 528


>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
          Length = 485

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 172/426 (40%), Gaps = 65/426 (15%)

Query: 51  SSAPSLDYHSTKHTTLLVESYHEHQAL------NALIQRLNKKVSCPLQILQHDGDWTKD 104
           SS+PS     T+ T      Y +  AL       A I  +++K +   Q  Q    W + 
Sbjct: 42  SSSPS-----TRETE---AEYEQPDALARILRTEAAISGVSRKAAAARQ--QSTNLWPR- 90

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRA 161
              AV+  L ++  + +     ++++ + K    E  SQ   +++ ML +      A   
Sbjct: 91  ---AVLEALDSAVAACRWESALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGL 147

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYDGLIQAYG 220
           F+EM    L+P+ ++Y ++I  Y   G    AL  + +MK   +  P   T+  L+    
Sbjct: 148 FREMLSERLRPTADVYTALIGAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCA 207

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS- 279
           K + +D I   L  M   G   + + +N +I  +  A + + MEG   +ML    ++   
Sbjct: 208 KSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSTMLESGSNVPDI 267

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRL-------------LNSRTPLKEDLVRKLAEV--Y 324
            TM +++ AY N G  D+MEK Y                +  R+  K  +  K+  +  Y
Sbjct: 268 YTMNSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMMSIFRY 327

Query: 325 IKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLL-------------------SHACL 361
           +K   FS      + +    GR     ++ +  RL+                   S A L
Sbjct: 328 MKKRFFSPTAVTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGL 387

Query: 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           L    +  V+R+ E+  V  +    N ++ AY K  D K +  +L  +  +  KPD +T 
Sbjct: 388 LDK--VAGVIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKRCKPDRITY 445

Query: 422 GILYDA 427
             +  A
Sbjct: 446 ATMIQA 451



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I      G +E+    F+ M+   +KP+   Y S+++GYSK G  ++    + +
Sbjct: 340 FNT--VIECFGRAGDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVAGVIRQ 397

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            +  N+   +  ++ +I AY K      ++  L++MK   C PD ITY  +IQ +   G+
Sbjct: 398 TENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKRCKPDRITYATMIQAYTAHGM 457


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 15/282 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++ L+ EA+  F  M+   + P +  YNS+I G     ++ EA   LNEM  +N
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ L+ A  K     E     K M   G  PD +TY+ L+  ++    +    
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKED---LVRKL 320
             + +M+TK     + +   ++  Y     +D+ ++ +  +++   TP   +   L+  L
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 321 AEVYIKNYMFSRL---DDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
            ++        RL    DL  ++ S     +L     LL   C   + G    + R M+S
Sbjct: 421 CQL-------GRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS 473

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             ++ ++   NI++ A  K  + K  R L SEL  + + P++
Sbjct: 474 TYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNV 515



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    ++  +C+EG + EA   F+ M    ++P +  Y+S+++GYS   +  EA    
Sbjct: 304 NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLF 363

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M      P + +Y+ LI+ Y K K  DE       M   G +PD++ YN LI      
Sbjct: 364 DAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQL 423

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+  +  +K+M +        T   +LD +   G L K  + + R++ S T LK D+ 
Sbjct: 424 GRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLF-RVMQS-TYLKPDIA 481



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 127 DMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D++KN+  +    + F    ++   C+EG + +A R F+ M+   LKP + +YN +I   
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAM 490

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G   +A    +E+    L P    Y  +I    K  + DE     + M+ DGC PD 
Sbjct: 491 CKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550

Query: 245 ITYNLLIQEF 254
            +YN++I+ F
Sbjct: 551 FSYNVIIRGF 560



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 36/285 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC+ G   +AV  F + E    +P++  Y +II+G  KIG+   A     +
Sbjct: 168 FNT--LINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKK 225

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E    P   TY+ LI +  K K+ +E       MK    SPD  TYN LIQ       
Sbjct: 226 MEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRR 285

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            K        M +  +     T   ++DA    G + + +  +K +  +   ++ D+V  
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTM--TEMGVEPDVVTY 343

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
            + +Y            G  L     R E+V   +L                  M +   
Sbjct: 344 SSLMY------------GYSL-----RMEIVEARKLFD---------------AMITKGC 371

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + +  + NI++  Y K K     + L +E+  + + PD V    L
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTL 416



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 2/178 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LF 196
           + F+   +I   C+   ++EA + F EM    L P    YN++IHG  ++G+  EA  LF
Sbjct: 374 DAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLF 433

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            N     NL P   TY  L+  + K     +     ++M+     PD   YN+LI     
Sbjct: 434 KNMHSNGNL-PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCK 492

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G LK     +  +  + +         I++     G+LD+  + ++ +     P  E
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+EGL++EA+ AF+ MEG    P    YN II G+ +    + A   + EM++  
Sbjct: 521 IINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580

Query: 205 LSPQSDT 211
              ++ T
Sbjct: 581 FVAEAGT 587



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+ G +++A + F E+    L P+++IY +II+   K G  +EAL     M+   
Sbjct: 486 LIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDG 545

Query: 205 LSPQSDTYDGLIQAYGKYK 223
             P   +Y+ +I+ + +YK
Sbjct: 546 CPPDEFSYNVIIRGFLQYK 564



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 106/269 (39%), Gaps = 4/269 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYD 213
           +++A+ +F  M      P +  +  ++    K+G++  A++ L++  E+  LSP   T  
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 214 GLIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
            LI  +   +  D    +  KM+KL G  PD +T+N LI      G   +    +     
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKL-GLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEA 193

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
                   T   I++     G        +K++  +           L +   K+ + + 
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNE 253

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILL 391
             D+   + ++    ++     L+   C     +   +++ EM S  +  N+ T N+++ 
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVD 313

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           A  K       + +   +    V+PD+VT
Sbjct: 314 AICKEGKVSEAQGVFKTMTEMGVEPDVVT 342


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  + +EA+  F+EM    L P +  YNS+I+G  K GK + AL  ++EM +  
Sbjct: 211 MINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRG 270

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L+ A  K    D+    LK +K  G  P+  TY +LI      G L+   
Sbjct: 271 QPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAH 330

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  ++  +T   ++  + N G+ D+
Sbjct: 331 NIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDE 363



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG ++EA      M    + P+   Y+S++ GY  + + N A    + M    ++    +
Sbjct: 148 EGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWS 207

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ +I  + K KM DE     + M      PD +TYN LI      GL K  + +Y   L
Sbjct: 208 YNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLIN-----GLCKSGKISYALKL 262

Query: 272 TKRMHLRSS-----TMVAILDAYMNFGMLDKMEKFYKRL 305
              MH R       T  ++LDA      +DK     K L
Sbjct: 263 VDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNL 301



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 78  NALIQRLNK--KVSCPLQILQ--HDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE 133
           N+LI  L K  K+S  L+++   HD     D        L    ++ Q+ +   + KN++
Sbjct: 244 NSLINGLCKSGKISYALKLVDEMHDRGQPPD-IITYSSLLDALCKNHQVDKAIALLKNLK 302

Query: 134 KS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
               R N +    +I  LC+ G +E+A   F+++       ++  Y  +IHG+   G F+
Sbjct: 303 DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFD 362

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQA 218
           EAL  L++MK+ +  P + TY+ +I++
Sbjct: 363 EALALLSKMKDNSCFPNALTYEIIIRS 389



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 62/131 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   +++A+   + ++   ++P++  Y  +I G  K G+  +A     ++    
Sbjct: 281 LLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 340

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +   +TY  +I  +    ++DE    L  MK + C P+ +TY ++I+         + E
Sbjct: 341 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAE 400

Query: 265 GTYKSMLTKRM 275
              + M+T+ +
Sbjct: 401 NLLREMITRGL 411


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 150/346 (43%), Gaps = 24/346 (6%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
           N  +I+ +L +E L+ +A   +  ME F +KP++  YN+++  Y K G+ ++AL  L+EM
Sbjct: 182 NCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEM 241

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           +E    P   TY+ L+    K    ++    ++ M   G +    TYN LI  F   GL 
Sbjct: 242 QERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLF 301

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLV-- 317
                  + M+ +R     ST   ++     +  +  +   +  +L S+ TP   D+V  
Sbjct: 302 VEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTP---DIVSF 358

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
             L   Y +    S    L D+L  R     ++    L+   C+  +  +D+ +R   EM
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY--LDAALRLKKEM 416

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG--- 431
               +  ++ T  I++    K+      R   +E+ ++ +KPD       Y+ R +G   
Sbjct: 417 TDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD----RFAYNTRIVGEMK 472

Query: 432 -FDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCE 473
             D + A  M + +   GF    +  N    V A+  +G+F   C+
Sbjct: 473 IADTSVAFSMQEEMLAAGFPPDVITYNV--FVHALCQQGNFEEACD 516



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  A   F EM    LKP    YN+ I G  KI   + A     EM      P   TY
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITY 498

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           +  + A  +   ++E    L+ M  DG  PDH+TY  +I  F   G L++    +  ML+
Sbjct: 499 NVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           K +     T   ++ A+    MLD    ++ ++L    P
Sbjct: 559 KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G  EEA    + M    L P    Y SII+G+ K G   +A    NEM    ++P 
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI A+   +M D   M    M       + ITYN +I       + +RM+  YK
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLC---MTRRMDEAYK 621

Query: 269 ---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
               M  K +     +   +++   N G  ++  + Y+ +L+ +
Sbjct: 622 YFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRK 665



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 180/453 (39%), Gaps = 46/453 (10%)

Query: 1   MESVVSLHLHN------NNNTHCKVRLNKNKKNKLTHD--------RVFFAKTLIRKPIS 46
           ME VVS  +H         +  C +  +K  +N L  D        RV   + L+ K  +
Sbjct: 142 MERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKN 201

Query: 47  CCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHF 106
              +     +      + T+L +SY +   ++  ++ L++        +Q  G +  D  
Sbjct: 202 VYGMMEQFGIKPTVVTYNTML-DSYCKEGRVDQALELLSE--------MQERGCYPNDVT 252

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + V+  +   S+  ++ Q   + + +  S +N   +    +I   C++GL  EA    +E
Sbjct: 253 YNVL--VNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+L  YN++++G  K  +     L  ++M +   +P   +++ L+  Y +   
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E  +    +K     P  ITYN LI      G L       K M  + +     T   
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL----VRKLAEVYIKN--YMFSRLDDLGD 338
           +++     G +     F+  +L+    LK D      R + E+ I +    FS  +++  
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSK--GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEM-- 486

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYL 394
            LA+  G    V    +  HA  L  +G       ++  M S  +  +  T   I+  ++
Sbjct: 487 -LAA--GFPPDVITYNVFVHA--LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           K    +  R + +E+ ++ V P +VT  +L  A
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II    + G + +A   F EM    + PS+  Y  +IH ++     + A ++ ++M E +
Sbjct: 536 IINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKS 595

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY+ +I      +  DE       M+  G  P+  +Y +LI E    G  +   
Sbjct: 596 VPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEAL 655

Query: 265 GTYKSMLTKRMHLRSST 281
             Y+ ML +++   S T
Sbjct: 656 RLYREMLDRKIQPDSFT 672



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 63/334 (18%), Positives = 127/334 (38%), Gaps = 18/334 (5%)

Query: 100 DWTKDHFWAVIR----FLKNSSRSRQIPQV---FDMWKNIEKS-RINEFNSQKIIGMLCE 151
           +W  D F AVI     F++     R  P+V   F  W   +   + +EF    I+ +L  
Sbjct: 72  NWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVG 131

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
             LM  A    + +  F +   +++   +I G+         LL  ++M    L P    
Sbjct: 132 NDLMHAAYWVMERVVSFEMHGVVDV---LIAGHVX------CLLVFDKMIRNGLLPDVKN 182

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
            + +++      +  +      MM+  G  P  +TYN ++  +   G + +       M 
Sbjct: 183 CNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQ 242

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            +  +    T   +++     G L++ +   + +LNS   +       L   + +  +F 
Sbjct: 243 ERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFV 302

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHAC-LLSHRGIDSVVREMESAKVRWNVTTANIIL 390
              DL +++ +R     L     L+   C  +   G+     +M  +K   ++ + N +L
Sbjct: 303 EAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLL 362

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             Y +        +L  EL  R + P ++T   L
Sbjct: 363 YGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 130 KNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           K +EKS   N      II  LC    M+EA + F EME   + P+   Y  +I+    +G
Sbjct: 590 KMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMG 649

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            + EAL    EM +  + P S T+   ++
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLK 678


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 127 DMWKNIEKSR-----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           D  K IE+ R      NEF    +I   C+ G ++ A R +  M    +KP++ +Y+++I
Sbjct: 436 DACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMI 495

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE---IDMCLKMMKLD 238
            G ++ GK  EA L   EM E    P   TY  +++ Y  +++ D    +     M+++ 
Sbjct: 496 DGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGY--FQIGDSSQALSFWEDMLRI- 552

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK- 297
           GC+P+ +TY++LI      G  K     +K ML +     +    +++  +   GM+D  
Sbjct: 553 GCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAG 612

Query: 298 MEKFYKRLLNSRT 310
           +  FY  L    T
Sbjct: 613 LRLFYDMLARGDT 625



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/166 (17%), Positives = 69/166 (41%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            ++G +   G +  A + F  M+     PS   YN ++HG    G+   A+  +  M+  
Sbjct: 353 PVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERA 412

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P   TY  ++    +    ++    ++ M+  G  P+   ++ +I  F   G + R 
Sbjct: 413 EVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRA 472

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
              + +M+   +        A++D     G + + E  ++ ++ ++
Sbjct: 473 SRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAK 518


>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
          Length = 443

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 122/319 (38%), Gaps = 40/319 (12%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           R+  QVF M K        E    K++ +L   G    A   F EM     +P+ E+Y +
Sbjct: 70  RRSSQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTA 129

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +I  Y + G  ++A   L +MK   +  P   TY  +I+A      +D +D   K M   
Sbjct: 130 LIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADR 189

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDK 297
             +P+ +T N+++  +  AG L  ME    +ML          TM  IL  + N G ++ 
Sbjct: 190 SIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIES 249

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           MEK+Y++        +   +  L   Y K  M+ ++                        
Sbjct: 250 MEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKM------------------------ 285

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
                      +V+  M      W   T N ++ A+    D K++    +++    +KPD
Sbjct: 286 ----------SAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 335

Query: 418 IVTIGILYDARRIGFDGTG 436
             T   L +    GF   G
Sbjct: 336 TKTFCCLIN----GFGNAG 350



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP +   N I+  +   G+      +  + +   + P++ T + LI AYGK +MYD++  
Sbjct: 228 KPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSA 287

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            ++ M+         T+N +I+ FA AG  K ME T+  M  + M   + T   +++ + 
Sbjct: 288 VMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFG 347

Query: 291 NFGMLDK---MEKFYKRL 305
           N G+  K   M K  +RL
Sbjct: 348 NAGLFHKVVGMVKLAERL 365



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +    G +E   + +++  G+ ++P     N +I  Y K   +++    +  M+++ 
Sbjct: 237 ILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLA 296

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + T++ +I+A+        ++     M+ +G  PD  T+  LI  F  AGL  ++ 
Sbjct: 297 FPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVV 356

Query: 265 GTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRL 305
           G  K  L +R+ +   T    A+L   +    L +ME+ + R+
Sbjct: 357 GMVK--LAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRM 397


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C++ L  +A   + EM    + P +  YN++I+G+  +GK  +A+   N+M   N
Sbjct: 247 IIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSEN 306

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T++ L+ A+ K     E    L MM   G  PD +TYN L+  +     + + +
Sbjct: 307 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAK 366

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             + +M  + +     +   +++ +    M+D+  K +K +
Sbjct: 367 SIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEM 407



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 44/277 (15%)

Query: 151 EEGLMEE--AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           E+G + +   ++  + ++G  L+P+L +YN+II    K    N+A    +EM    + P 
Sbjct: 216 EQGSLSQRAPLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPD 275

Query: 209 SDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            +TY+ LI  +   GK K  D I +  KM   +  +PD  T+N+L+  F   G +K  + 
Sbjct: 276 VNTYNALINGFCIVGKLK--DAIGLFNKMTS-ENINPDVYTFNILVDAFCKEGRVKEAKN 332

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
               M+ + +     T  +++D Y     ++K +  +  + +             A V  
Sbjct: 333 GLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVT---------ANVRS 383

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            + M +R                  +C ++++  A  L         +EM   ++  NV 
Sbjct: 384 YSIMINR------------------FCKIKMVDQAMKL--------FKEMHHKQIFPNVI 417

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           T + ++    K     +   L  E+  R  +PDI+T+
Sbjct: 418 TYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITL 454



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q P +  + + ++    R N F    +I  LC+ G +E+A   F+++       ++  Y 
Sbjct: 447 QQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYT 506

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
            +IHG+   G F+EA+  L++MK+    P + TY+ +I++
Sbjct: 507 VMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRS 546



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/104 (20%), Positives = 49/104 (47%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G   + +   ++++   ++P++  Y  +I G  K G+  +A     ++     +   +
Sbjct: 444 DRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVN 503

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           TY  +I  +    ++DE    L  MK + C P+ +TY ++I+  
Sbjct: 504 TYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSL 547


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 134/330 (40%), Gaps = 9/330 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A+I  L  + +      + D+  N+     N      ++  LC+ G +EEA +  +EM
Sbjct: 605 FGALIDGLCKAGQVEAARDILDLMGNLGVPP-NVVTYNALVHGLCKSGRIEEACQFLEEM 663

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
                 P    Y S+++   +  + ++AL  ++E+K     P + TY+ L+    K    
Sbjct: 664 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQT 723

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---KRMEGTYKSMLTKRMHLRSSTM 282
           ++    L+ M   G  PD +TYN LI     AG L   +R+ G   S +++       T 
Sbjct: 724 EQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTY 783

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL 340
             +++     G +D+  +  + ++     +  +++      +   K  M +   +L   L
Sbjct: 784 SVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSL 843

Query: 341 ASRIGRT--ELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMK 397
                R   + V    L+   C         +V  +M +     NV T N+++    K  
Sbjct: 844 RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTD 903

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +    ++  +  + V PD++T  +L DA
Sbjct: 904 KMERAHAMIESMVDKGVTPDVITYSVLVDA 933



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 120/306 (39%), Gaps = 53/306 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++EA   F +M      P++  YN++++G  K  K   A   +  M +  
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 425

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  L+ A+ K    DE    L  M   GC+P+ +T+N +I      GL K   
Sbjct: 426 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID-----GLCKSDR 480

Query: 265 GTYKSMLTKRMHLRSS------TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
                 +   M L+        T   ++D     G   + E     + +  T        
Sbjct: 481 SGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDT-------- 532

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                Y  N   + L  LGD                 +S A  + +R ++    E+   K
Sbjct: 533 -----YAFNCCINGLSKLGD-----------------VSRALQVYNRMLE---LELVPDK 567

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V     T NI++    K  +F+    L  E+  ++++PD++T G L D    G    G +
Sbjct: 568 V-----TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID----GLCKAGQV 618

Query: 439 EMWKRI 444
           E  + I
Sbjct: 619 EAARDI 624



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 52/289 (17%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC+ G  +EA   F +M      P++  YN +++G  K  K   A   +  M +  
Sbjct: 860  LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            ++P   TY  L+ A+ K    DE    L  M   GC+P+ +T+N +I      GL K  +
Sbjct: 920  VTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIID-----GLCKSDQ 974

Query: 265  GTYKSMLTKRMHLRSS------TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
                  +   M L+        T   ++D     G   + E     + +  T        
Sbjct: 975  SGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDT-------- 1026

Query: 319  KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                 Y  N   + L  LGD                            +   +  M   +
Sbjct: 1027 -----YAFNCCINGLSKLGD----------------------------VSRALHRMLELE 1053

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +  +  T NI++    K  +F+    L  E+  ++++PD++T G L D 
Sbjct: 1054 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 1102



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G  E+A   F+EM    L+P +  + ++I G  K G+   A   L+ M  + 
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 632

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + P   TY+ L+    K    +E    L+ M   GC PD ITY  L+
Sbjct: 633 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 679



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 39/288 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++  LC  G    A+  F+ EM    + P++  YN+II+G  K  +    +    E+ E 
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P   TY+ LI +  K    +E       M    C P+ +TY++LI      GL K  
Sbjct: 246 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLIN-----GLCKVG 300

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE- 322
                  L + M  +S  ++  +  Y +F  LD + K       S T    +L+R L + 
Sbjct: 301 RIDEARELIQEMTRKSCDVLPNIITYNSF--LDGLCK------QSMTAEACELMRSLRDG 352

Query: 323 ---VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
              V      FS L D             L  C + +  AC        SV  +M +   
Sbjct: 353 SLRVSPDTVTFSTLID------------GLCKCGQ-IDEAC--------SVFDDMIAGGY 391

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             NV T N ++    K    +    ++  +  + V PD++T  +L DA
Sbjct: 392 VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDA 439



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 10/189 (5%)

Query: 109  VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-G 167
            V  F K S     +  +  M        +  FNS  II  LC+     EA + F +M   
Sbjct: 931  VDAFCKASHVDEALELLHGMASRGCTPNVVTFNS--IIDGLCKSDQSGEAFQMFDDMTLK 988

Query: 168  FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              L P    Y ++I G  + G   +A + L+ M      P  DTY       G  K+ D 
Sbjct: 989  HGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAM------PDPDTYAFNCCINGLSKLGDV 1042

Query: 228  IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                 +M++L+   PD +T+N+LI     AG  ++    ++ M+ K +     T  A++D
Sbjct: 1043 SRALHRMLELE-LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 1101

Query: 288  AYMNFGMLD 296
                 G ++
Sbjct: 1102 GLCKAGQVE 1110


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 139/320 (43%), Gaps = 15/320 (4%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +IG+L   G + +A+  F+EME   + P   IY  +I G+ + G  ++AL   +EM  
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                   TY+  +    K KM+ + DM    M   G  PD  T+  LI+ +   G + +
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDK 520

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
               +++M+   +     T   ++D +   G + + ++ +  ++             +  
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVREMESA 377
            +  + +     +L D +  +  R  LV C  L+   C    R  D       + +M S 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC----RSGDMPKAYEYLSKMISN 636

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            +  +  + N ++  YLK  + +   +L++E+  R ++ +I+T  ++ +    GF   G 
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILN----GFCAEGK 692

Query: 438 LEMWKRIGFLFKTVEINTDP 457
           ++  +++  L K +EI  +P
Sbjct: 693 MQEAEQV--LRKMIEIGINP 710



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 126/304 (41%), Gaps = 23/304 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C EGL+EEA +         ++P L  YN+I++G  KIGK++ A   L EM ++ 
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLG 357

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P + TY+ L+    +     E       M   G  PD ++++ LI      G+L R  
Sbjct: 358 LTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI------GVLARNG 411

Query: 265 GTYKSMLTKRMHLRSSTM------VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
             Y++++  R   RS  +        ++D +   G L    K    +L     +      
Sbjct: 412 HLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYN 471

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                  K  MF+  D L +++  R    +      L+   C      +D  +   E A 
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC--KDGNMDKALNLFE-AM 528

Query: 379 VRWNV----TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           VR N+     T N ++  + K  +    + L  ++  + + PD ++ G + +    GF  
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN----GFCS 584

Query: 435 TGAL 438
           +G L
Sbjct: 585 SGLL 588



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++ ++ +  ++W ++ +  I  +  +   ++   C  GL+ EA+    +M    ++P+L 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N++I GY + G   +A  +L++M    + P S +Y+ LI  Y K    ++  + +  M
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM 668

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   + ITYNL++  F   G ++  E   + M+   ++   +T  ++++ +++   +
Sbjct: 669 EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNM 728

Query: 296 DKMEKFYKRLL 306
            +  +F+  +L
Sbjct: 729 KEAFRFHDEML 739



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 41/416 (9%)

Query: 40  LIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDG 99
           ++   IS C    +  L Y       LLV +Y + + L        ++ S   QIL+  G
Sbjct: 172 VVESLISTCFYFGSVGLIYD------LLVRTYVQAKKL--------REGSEAFQILRRKG 217

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEE 157
                   A  + L    R+  +   ++++  + +  I  N +    ++  LC++   E 
Sbjct: 218 --VSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFEN 275

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            +    +MEG  +   +  YN++I+ Y + G   EA   LN      + P   TY+ ++ 
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 218 AYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
              K   YD   D+ ++M++L G +P+  TYN L+ E      +   +  +  M      
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQL-GLTPNAATYNTLLVEICRRDNILEAQEIFDEM------ 388

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK------LAEVYIKNYMF 330
            R   +  ++      G+L +    Y+ L++ R   +  +V        L + + +N   
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAKVRWNVTTANII 389
           S    + D++ +R    ++V     L+  C        D +  EM    +  +  T   +
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMW 441
           +  Y K  +      L   +   ++KPD VT   L D    GF   G    A E+W
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID----GFCKAGEMGRAKELW 560



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 3/155 (1%)

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN-IEKS-RINEFNSQKIIGMLCEEGLMEE 157
           D   DH  +    L     S  +P+  ++    +EK  R N      +I   C  G M +
Sbjct: 567 DIIPDHI-SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPK 625

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A     +M    + P    YN++I GY K     +A + +NEM++  L     TY+ ++ 
Sbjct: 626 AYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILN 685

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +       E +  L+ M   G +PD  TY+ LI 
Sbjct: 686 GFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +   + + F +   +EK   + N      I+   C EG M+EA +  ++M    + P   
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGA 713

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            Y+S+I+G+       EA  F +EM +  L P
Sbjct: 714 TYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 2/241 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +   I FL  S+R  +  ++FD     E    N      +I   C+ G ++EA   F++M
Sbjct: 365 YGCFIDFLCKSNRVEEARRLFDSLTE-EGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM 423

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
                 P+   +N++IHG    G   EAL   ++M +M L P   T++ LI    K   +
Sbjct: 424 LSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDF 483

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D+   CL+ M   G  P   TYN  I+ +  AG ++  E     M  + +     T  ++
Sbjct: 484 DDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSL 543

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           + AY   G+        K + ++   P     +  + +++ K Y+  +  + G +  S  
Sbjct: 544 IKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNF 603

Query: 345 G 345
           G
Sbjct: 604 G 604



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 46/271 (16%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           + D+F +   F+    RS+ +   F +++  E    NE +  ++I  LCE G ++EAV  
Sbjct: 224 SPDYFTST-SFILGYCRSKDVDSAFRVFE--EMPNRNEVSYNQLIHGLCEAGRIDEAVSL 280

Query: 162 F----------------------------------QEMEGFALKPSLEIYNSIIHGYSKI 187
           F                                   EM    L P L  YNS+I G  + 
Sbjct: 281 FVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRA 340

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G  + A   L+ MKE  L P   TY   I    K    +E       +  +G S + I Y
Sbjct: 341 GHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMY 400

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           ++LI  +   G +      ++ ML+K     + T  A++    + G L +    + +++ 
Sbjct: 401 SVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV- 459

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
            +  LK         VY  N +  R+   GD
Sbjct: 460 -KMGLK-------PTVYTFNILIGRMLKQGD 482



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 46/298 (15%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKIGKFNEALLFLN 198
           F S   I   C    ++ A R F+EM         E+ YN +IHG  + G+ +EA+    
Sbjct: 228 FTSTSFILGYCRSKDVDSAFRVFEEMPNRN-----EVSYNQLIHGLCEAGRIDEAVSLFV 282

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            MK+    P   TY  LI+   +  ++  + +  +M++ +   PD ITYN LI     AG
Sbjct: 283 RMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDEMLERN-LVPDLITYNSLIAGQCRAG 341

Query: 259 LLKRMEGTYK--SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
               ++  Y+  S++ +R  +           +++F       +  +RL +S T      
Sbjct: 342 ---HLDSAYRLLSLMKERGLVPDQRTYG---CFIDFLCKSNRVEEARRLFDSLTEEGVSA 395

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHACLLSHRGIDSVVREM 374
              +  V I  Y              ++G+ +   CL  ++LS  C  +    ++++  +
Sbjct: 396 NVIMYSVLIDGY-------------CKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGL 442

Query: 375 ESA----------------KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            SA                 ++  V T NI++   LK  DF      L ++ +   KP
Sbjct: 443 CSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKP 500



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 5/189 (2%)

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-----MEEAVRAFQEMEGFALKPSLEI 176
           I Q+FD    +EKS      S    G +    +      +  +  F+EME     P  + 
Sbjct: 579 IKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKC 638

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y  +I G  K+     AL  L++M++  +SP    ++ +I    K + Y E    ++ M 
Sbjct: 639 YEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMI 698

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G SP       LI      G  +R    +K +     +        ++D  +  G+++
Sbjct: 699 CSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVE 758

Query: 297 KMEKFYKRL 305
           +  + ++ +
Sbjct: 759 EFSQLFEEM 767



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 19/186 (10%)

Query: 125 VFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY--N 178
           V D+ + + K  I + + +   +++ +L   GL++E  + + EM E F    S++IY  N
Sbjct: 140 VSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFV---SMDIYTFN 196

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +I+ Y K+G   EA  F+ +M +  LSP   T    I  Y + K  D      + M   
Sbjct: 197 LMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMP-- 254

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL------DAYMNF 292
             + + ++YN LI     AG +      +  M     +    T  A++      + +   
Sbjct: 255 --NRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAM 312

Query: 293 GMLDKM 298
           G+LD+M
Sbjct: 313 GLLDEM 318


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 41/287 (14%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R +      ++  LC  G   +A R  ++M    + P++  + ++I  + K GKF+EA+ 
Sbjct: 206 RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMK 265

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              EM    + P   TY+ LI     +   DE    L +M   GC PD +TYN LI  F 
Sbjct: 266 LYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +  +      ++ M  + +   + T   I+  Y   G  D  ++ + R ++SR      
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR-MDSRPN---- 380

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--RE 373
                    I+ Y                          +L +   ++ R   ++V    
Sbjct: 381 ---------IRTY-------------------------SILLYGLCMNWRVEKALVLFEN 406

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           M+ +++  ++TT NI++    K+ + +    L   L  + +KPD+V+
Sbjct: 407 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 137/330 (41%), Gaps = 32/330 (9%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           + L   ++S+    V  ++ ++E   I    ++   +I  LC       A+    +M  F
Sbjct: 74  KVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKF 133

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P +   +S+I+G+ +  +  +A+  +++M+EM   P    Y+ +I    K  + ++ 
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 M+ DG   D +TYN L+    C+G         + M+ + +     T  A++D 
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDD---LG 337
           ++  G   +  K Y           E++ R+  +  +  Y        M  R+D+   + 
Sbjct: 254 FVKEGKFSEAMKLY-----------EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYL 394
           D + ++    ++V    L++  C    + +D    + REM    +  +  T N I+  Y 
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFC--KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +       + + S + +R   P+I T  IL
Sbjct: 361 QAGRPDAAQEIFSRMDSR---PNIRTYSIL 387



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC    +E+A+  F+ M+   ++  +  YN +IHG  KIG   +A      +    L P 
Sbjct: 391 LCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPD 450

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
             +Y  +I  + + + +D+ D+  + M+ DG  P
Sbjct: 451 VVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 35/281 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +++A   F EM GF   P +  YN++I+G+ ++ + +     L E+   N
Sbjct: 243 LIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKN 302

Query: 205 -LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            LSP   TY  +I  Y K    ++  +    M   G  P+  T+N+LI  F   G +   
Sbjct: 303 DLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSA 362

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           E  Y+ ML         T  +++D +   G +++  K +   LN+R             +
Sbjct: 363 ENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHE-LNARN------------L 409

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
               Y F+ L +                   L     L   RG    +R+++   +    
Sbjct: 410 SPNEYTFAILTN------------------ALCKENRLHEARGF---LRDLKWRHIVAQP 448

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              N ++  + K  +     V+L+E+  +  KPD +T  IL
Sbjct: 449 FMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTIL 489



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +E +++ + E+    L P+   +  + +   K  + +EA  FL ++K  ++  Q 
Sbjct: 389 CRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQP 448

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y+ +I  + K    DE ++ L  M+   C PD ITY +LI      G L      +  
Sbjct: 449 FMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNR 508

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGM 294
           ML       S TM +++   +  GM
Sbjct: 509 MLGTGCAPDSITMTSLISCLLKAGM 533



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+ ++ +   +W  +    +  NE+    +   LC+E  + EA    ++++   +     
Sbjct: 390 RTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPF 449

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLKM 234
           +YN +I G+ K G  +EA + L EM+E    P   TY  LI  +  K ++ + I +  +M
Sbjct: 450 MYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM 509

Query: 235 MKLDGCSPDHITYNLLIQEFACAGL 259
           +   GC+PD IT   LI     AG+
Sbjct: 510 LG-TGCAPDSITMTSLISCLLKAGM 533



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           SL +YN +++   +  + +EA+ F  E   ++    S +++ LI+   +    D+     
Sbjct: 201 SLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELF 260

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMN 291
             M+  GCSPD ITYN LI  F     + R     K +L+K  +     T  +I+  Y  
Sbjct: 261 NEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK 320

Query: 292 FGMLDKMEKFYKRLLNS 308
            G ++K    +  +++S
Sbjct: 321 LGKMEKASILFNNMISS 337



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           W++I       F    +I   C+ G ++EA     EME    KP    Y  +I G+   G
Sbjct: 441 WRHIVAQ---PFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKG 497

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           + +EA+   N M     +P S T   LI    K  M +E
Sbjct: 498 RLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNE 536


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC  G +EEAV    +M G    P+   YN+++  + + G+ + A   +
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 198 NEMK-EMNLSPQSDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           + M+ E N  P   T++ ++          G  K++DE       M  +G +PD ++YN 
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE-------MVREGLAPDVVSYNT 263

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           L+  +   G L      +  M  + +     T  +++ A    G L++      ++    
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDD--LGDDLASRIGRTELVWCLR-LLSHACLLSHRG 366
             + E     L + + K      LDD  L  +   + G    V C   L++  C L    
Sbjct: 324 LRMNEVTFTALIDGFCKKGF---LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380

Query: 367 ID-SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   ++REME+ +V+ +V T + I+  Y K+ +      L  ++  + V PD +T
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+NE     +I   C++G +++A+ A +EM    ++PS+  YN++I+GY K+G+ + A  
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 384

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + EM+   + P   TY  +I  Y K    D      + M   G  PD ITY+ LI+   
Sbjct: 385 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 444

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
               L      +++ML   +     T   ++D +   G ++K    +  ++
Sbjct: 445 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  FNS  ++  LC+ G ME A + F EM    L P +  YN+++ GY K+G  +E+
Sbjct: 220 KPNLVTFNS--MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L   +EM +  L P   T+  LI A  K    ++    +  M+  G   + +T+  LI  
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           F   G L       + M  ++  ++ S +   A+++ Y   G +D   +  + +   R  
Sbjct: 338 FCKKGFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-- 393

Query: 312 LKEDLV 317
           +K D+V
Sbjct: 394 VKPDVV 399



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 18/276 (6%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +  A R    M    + P++  YN ++      G+  EA+  + +M+    +P + TY+ 
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYK---SM 270
           L+ A+ +    D  +  + +M+ +G   P+ +T+N ++     AG   RMEG  K    M
Sbjct: 193 LVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG---RMEGARKVFDEM 249

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNY 328
           + + +     +   +L  Y   G L +    +  +  ++  L  D+V    L     K  
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM--TQRGLVPDVVTFTSLIHATCKAG 307

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI--DSV--VREMESAKVRWNVT 384
              +   L   +  R  R   V    L+   C    +G   D++  V EM    ++ +V 
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGFC---KKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             N ++  Y K+      R L+ E+  + VKPD+VT
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT 400



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  LCEE  + +A   F+ M    ++P    Y ++I G+ K G   +AL   +EM  
Sbjct: 437 SSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-------------- 248
             + P   TY  LI    K     E    L  +  +   PD+I Y+              
Sbjct: 497 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSV 556

Query: 249 -LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             L++ F   GL+K  +  Y+SML +   L  S    ++  +   G + K   F+K++L 
Sbjct: 557 VALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLR 616

Query: 308 S 308
           S
Sbjct: 617 S 617



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+ A    +EME   +KP +  Y++II GY K+G  + A     +M +  
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P + TY  LI+   + K + D  ++   M++L G  PD  TY  LI      G +++ 
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 264 EGTYKSMLTK 273
              +  M+ K
Sbjct: 488 LSLHDEMIRK 497



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 139 EFNSQKIIGML---CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           EF S  ++ +L   C +GLM+EA + +Q M     K    +Y+ +IHG+ + G   +AL 
Sbjct: 552 EFKS--VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 609

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           F  +M     SP S +   L++   +  M  E D  ++   L  C P
Sbjct: 610 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ--DLLTCCP 654


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 41/287 (14%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R +      ++  LC  G   +A R  ++M    + P++  + ++I  + K GKF+EA+ 
Sbjct: 147 RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMK 206

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              EM    + P   TY+ LI     +   DE    L +M   GC PD +TYN LI  F 
Sbjct: 207 LYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 266

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +  +      ++ M  + +   + T   I+  Y   G  D  ++ + R ++SR      
Sbjct: 267 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR-MDSRPN---- 321

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--RE 373
                    I+ Y                          +L +   ++ R   ++V    
Sbjct: 322 ---------IRTY-------------------------SILLYGLCMNWRVEKALVLFEN 347

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           M+ +++  ++TT NI++    K+ + +    L   L  + +KPD+V+
Sbjct: 348 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 394



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 137/330 (41%), Gaps = 32/330 (9%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           + L   ++S+    V  ++ ++E   I    ++   +I  LC       A+    +M  F
Sbjct: 15  KVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKF 74

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P +   +S+I+G+ +  +  +A+  +++M+EM   P    Y+ +I    K  + ++ 
Sbjct: 75  GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 134

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 M+ DG   D +TYN L+    C+G         + M+ + +     T  A++D 
Sbjct: 135 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 194

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDD---LG 337
           ++  G   +  K Y           E++ R+  +  +  Y        M  R+D+   + 
Sbjct: 195 FVKEGKFSEAMKLY-----------EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 243

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYL 394
           D + ++    ++V    L++  C    + +D    + REM    +  +  T N I+  Y 
Sbjct: 244 DLMVTKGCLPDVVTYNTLINGFC--KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 301

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +       + + S + +R   P+I T  IL
Sbjct: 302 QAGRPDAAQEIFSRMDSR---PNIRTYSIL 328



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC    +E+A+  F+ M+   ++  +  YN +IHG  KIG   +A      +    L P 
Sbjct: 332 LCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPD 391

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
             +Y  +I  + + + +D+ D+  + M+ DG  P
Sbjct: 392 VVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 131/320 (40%), Gaps = 43/320 (13%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC----EEGLMEEAVRAFQE 164
           +++     ++ ++  +VF+   N E S +     QK+  M+     + G  E+A + F  
Sbjct: 192 ILKTFVEGNKFKEAEEVFETLLNKENSPLEP--DQKMFHMMIYMQKKAGNYEKARKVFAL 249

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    +  S   YNS++   S    + E     ++M+   L P   +Y  LI+AYG+ + 
Sbjct: 250 MAERGVPQSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARR 306

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +E     + M   G  P H  YN+L+  FA +G++++    +KSM   R      +   
Sbjct: 307 EEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTT 366

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +L AY+N   ++  E F+KRL                          R D L  ++    
Sbjct: 367 MLSAYVNASDMEGAENFFKRL--------------------------RQDGLKPNV---- 396

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
               + +   +  HA + +   +  +  EM+   ++ N T    I+ AY K KDF    +
Sbjct: 397 ----VTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVI 452

Query: 405 LLSELPTRHVKPDIVTIGIL 424
              E+    V PD     IL
Sbjct: 453 WYKEMEHHGVPPDQKAQNIL 472



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 131/332 (39%), Gaps = 11/332 (3%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A + L  M      P   ++  L++AYG+   Y+  +   + M+  G
Sbjct: 122 LITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSG 181

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMN--FGMLD 296
             P  +TY ++++ F      K  E  ++++L K    L     +  +  YM    G  +
Sbjct: 182 PEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYE 241

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRL 355
           K  K +  +     P        L   +  NY    +  + D +     R ++V + L +
Sbjct: 242 KARKVFALMAERGVPQSTVTYNSLMS-FETNY--KEVSKIYDQMQRSGLRPDVVSYALLI 298

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
            ++          +V  EM  A VR +    NI+L A+      +  RV+   +      
Sbjct: 299 KAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCT 358

Query: 416 PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEV 475
           PD+ +   +  A     D  GA   +KR+        + T   ++  + K + L    E+
Sbjct: 359 PDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEI 418

Query: 476 YSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507
           Y  ++  S +      Q ++  ++   GKN D
Sbjct: 419 YEEMQLNSIKAN----QTILTTIMDAYGKNKD 446



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A   F+ +    LKP++  Y ++I G++K+    + +    EM+  ++         
Sbjct: 377 MEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTT 436

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++ AYGK K +    +  K M+  G  PD    N+L+
Sbjct: 437 IMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILL 473



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 54/296 (18%), Positives = 120/296 (40%), Gaps = 15/296 (5%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
            NE +   +I    + G    A    + M G    P++  + +++  Y + G++N A   
Sbjct: 114 FNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAI 173

Query: 197 LNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
              M+     P + TY  +++ +    K+K  +E+   L   +     PD   ++++I  
Sbjct: 174 FRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYM 233

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
              AG  ++    +  M  + +   + T  +++    N+    ++ K Y ++   R+ L+
Sbjct: 234 QKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFETNY---KEVSKIYDQM--QRSGLR 288

Query: 314 EDLVRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
            D+V     + IK Y  +R ++       + L + +  +   + + L + A         
Sbjct: 289 PDVVS--YALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQAR 346

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            V + M   +   ++ +   +L AY+   D +        L    +KP++VT G L
Sbjct: 347 VVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGAL 402


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 34/268 (12%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           ++E+E   ++    + N II G++K G  N AL FL+ ++   L+P++ T+  +I A G 
Sbjct: 269 YEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGN 328

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           +   +E +   + MK  G  P    +N L++ +A  G LK  E     M    +     T
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++DAY N G          R  ++R  LK+   R    V    ++FSR+      LA
Sbjct: 389 YGLLVDAYANVG----------RWESARHLLKQMEARN---VQPNTFIFSRI------LA 429

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           S   R E  W             +    V+REM+++ V+ +    N+++  + K     H
Sbjct: 430 SYRDRGE--W-------------QKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDH 474

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDARR 429
                  + +  ++PD+VT   L D  R
Sbjct: 475 AMETYDRMLSEGIEPDVVTWNTLIDCHR 502



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 116/282 (41%), Gaps = 34/282 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G  EEA   F+EM+   LKP ++ +N+++ GY++ G   EA   ++EM++  
Sbjct: 322 VISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSG 381

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP   TY  L+ AY     ++     LK M+     P+   ++ ++  +   G  ++  
Sbjct: 382 LSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTF 441

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M    +         ++D +  F  LD   + Y R+L+    ++ D+V       
Sbjct: 442 EVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEG--IEPDVV------- 492

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
                                     W   +  H     H     +  EM+        T
Sbjct: 493 -------------------------TWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPT 527

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           T NI++ +  + + +  +++LL ++ ++ + P++VT   L D
Sbjct: 528 TYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVD 569



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  + A   F+EM+     P    YN +I+   +  K++E  + L +M+   L P   TY
Sbjct: 505 GYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTY 564

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+  YG    +++   CL+ MK  G  P    YN LI  FA  GL ++    Y+ M++
Sbjct: 565 TTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMIS 624

Query: 273 KRMHLRSSTMVAILDAY 289
             +      + ++++A+
Sbjct: 625 DGLRPSLLALNSLINAF 641



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + GL E+AV A++ M    L+PSL   NS+I+ + +  +  EA   L  MKE +
Sbjct: 602 LINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKEND 661

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + P   TY  L++A  +   +D++    + M L GC+PD
Sbjct: 662 VKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPD 700



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 75/153 (49%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+  +  M    ++P +  +N++I  + K G  + A     EM+E    P   TY+ 
Sbjct: 472 LDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNI 531

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I + G+ + +DE+ + L  M+  G  P+ +TY  L+  +  +G         ++M +  
Sbjct: 532 MINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAG 591

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           +   ++   A+++A+   G+ ++    Y+ +++
Sbjct: 592 LKPSATMYNALINAFAQRGLSEQAVNAYRVMIS 624



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L E+   +E      +M+   L P++  Y +++  Y   G+FN+A+  L  MK   
Sbjct: 532 MINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAG 591

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L P +  Y+ LI A+ +  + ++     ++M  DG  P  +  N LI  F 
Sbjct: 592 LKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFG 642



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +    G   +A+   + M+   LKPS  +YN++I+ +++ G   +A+     M    
Sbjct: 567 LVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDG 626

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P     + LI A+G+ +   E    L+ MK +   PD +TY  L++         ++ 
Sbjct: 627 LRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVP 686

Query: 265 GTYKSML 271
             Y+ M+
Sbjct: 687 AVYEEMI 693


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           CE+G M+EA++ + EM      P+   Y +++ GY K   F+ A   LNEM++  +S   
Sbjct: 441 CEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGD 500

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI          E+D  LK    +G  P  +TYN +I  F  AG++    G Y+ 
Sbjct: 501 YTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQ 560

Query: 270 MLTKRMHLRSSTMVAILDAY 289
           M  K +     T  + +D Y
Sbjct: 561 MRKKGITPNIVTYTSFIDGY 580



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+   + EAV  + +M+   +KPS+  Y+S++ GY + G+ +EAL   +E
Sbjct: 396 FTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSE 455

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +    P   TY  L++ Y K K +D     L  M+ +G S    TYN+LI        
Sbjct: 456 MPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNR 515

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +  ++   K  L++     + T  +I++ ++  GM+      Y+++
Sbjct: 516 VCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQM 561



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 15/290 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++  +CE   ++E ++ F   EGF   P+   YNSII+G+ K G    A     +
Sbjct: 507 INGLYMVNRVCE---VDEMLKRFLS-EGFV--PTTMTYNSIINGFVKAGMMGSAFGMYRQ 560

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M++  ++P   TY   I  Y +    D     L  ++ DG  PD   YN  I  F   G 
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           + R       +L   +    +   + +  Y N  M+ +  KFY  ++  R     ++   
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 320 LAEVY--IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
           L + +  + N  F+ L+   + +A+ +   +  +    L+H  L     ID   R   +M
Sbjct: 681 LIDGFSKVGNVAFA-LELYSEMMANHVIPDDKTFT--ALTHG-LCRSGDIDGAKRLLDDM 736

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               V  N+ T N+++ A ++    +    L  E+ +  V PD  T  IL
Sbjct: 737 RRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 124/304 (40%), Gaps = 26/304 (8%)

Query: 150 CEEGLME-EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G M  +AVR F EM G  +KP   +Y   I G  K+   + AL  L +M+E    P 
Sbjct: 195 CVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPW 254

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY  ++    K +  DE + +  +M+   G   D +   +L+  +   G + +    +
Sbjct: 255 ELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLF 314

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             +++  +   + T   ++      GM D+  K  ++++             L   Y  N
Sbjct: 315 DEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGL---------LPSTYEFN 365

Query: 328 YMFSRLDDLGDD-LASRIGRTELV---WCLRLLSHACLL----SHRGIDSVVR---EMES 376
            +   L  L D      IG  +LV       + ++ CL+     H+ +   V    +M+ 
Sbjct: 366 LVIKGL--LRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKE 423

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDG 434
           A V+ ++ T + +LL Y +         L SE+P +   P+ VT   L     ++  FD 
Sbjct: 424 AGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDN 483

Query: 435 TGAL 438
             AL
Sbjct: 484 AYAL 487


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 1/288 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I  LC+    ++A R F+EM G  L+P+   Y  +IH   K G   +AL   
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M++  +      Y+ LI  Y K    D     L  M  +G +P   +Y+ LI      
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      ++ M  + +   + T  A+++ +     +D+  + + ++++S     E   
Sbjct: 457 GDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
             + E Y       +   L D +     + +      L+S  CL S     +  V ++E+
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +    N  +   +L  + +   F     L  E+  R VK D+V+  I+
Sbjct: 577 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTII 624



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   ++     EG   E    + EM    +K  L  +  I++   K     ++ + 
Sbjct: 581 LNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMKE  + P    Y  +I A  K +   +   C   M +DG SP+ +T+ +LI     
Sbjct: 641 FREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCK 700

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +G L   E   K ML   +     T    LD +   G ++K +  +  +L  
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQG 752



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 117/310 (37%), Gaps = 35/310 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R ++  +V ++  NI  +  +E   + ++   C    +E A+R   +M      PS    
Sbjct: 248 RVQEAVEVKNVMVNIGVTA-DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANC 306

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           + +I    K     EA     ++ ++ + P    Y+ LI    K + +D+ D   K M  
Sbjct: 307 SFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAG 366

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+ +TY +LI      G+++     +  M  K + +      ++++ Y   G LD+
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDR 426

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                  +      +KE L    A        +S L      +A      +L  C+ L  
Sbjct: 427 ARGLLSGM------VKEGLTPTAAS-------YSPL------IAGLCRNGDLSSCMEL-- 465

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           H             REM    + WN  T   ++  + K K       L  ++   +V P+
Sbjct: 466 H-------------REMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 418 IVTIGILYDA 427
            VT  ++ + 
Sbjct: 513 EVTFNVMIEG 522



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 1/151 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F     +     EG ME+A      M    L  S+  +N +I G  K GK  EA+  +
Sbjct: 722 NKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLM 780

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +++ E   SP   +Y  +I    K    ++       M   G  PD + YN+ I+     
Sbjct: 781 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 840

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           G   +  G Y +M+   +     T  A+L  
Sbjct: 841 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 89  SCPLQILQHDGDWTK----------DHFWAVIRF---LKNSSRSRQIPQVFDMWKNIEKS 135
           +C L     +GD  K           H  +++ F   +K   ++ +I +  D+   I +S
Sbjct: 727 NCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITES 786

Query: 136 RINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
             +    +   II  LC+ G + +A   + EM    LKP +  YN  I   +  G+ ++A
Sbjct: 787 GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           L     M    + P  DTY  L+        YD
Sbjct: 847 LGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 8/201 (3%)

Query: 79  ALIQRLNKKVSCPL-QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN--IEKS 135
           A +++ +K+ SC L + ++  G    D F+  +  +   S+   + Q  + W    ++  
Sbjct: 627 AALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM--IDALSKEENMIQALNCWDQMVVDGY 684

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
             N      +I  LC+ G +  A    +EM    + P+   YN  +  ++  G   +A  
Sbjct: 685 SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD 744

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             + M + +L+    +++ LI+   K  K+ + ID+  K+ +  G SPD I+Y+ +I E 
Sbjct: 745 LHSAMLQGHLASIV-SFNILIKGLCKAGKIQEAIDLMSKITE-SGFSPDCISYSTIIHEL 802

Query: 255 ACAGLLKRMEGTYKSMLTKRM 275
              G + +    +  ML K +
Sbjct: 803 CKMGDINKAFELWNEMLYKGL 823


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I  LC+ G ME A+  F +ME   + P++  YN II+G  + G+ + A     +
Sbjct: 221 FSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEK 280

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P   TY  LI    K   +D+++  L  M   G +P+ + +N LI  +   G 
Sbjct: 281 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMG- 339

Query: 260 LKRMEGTYK---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
              +EG  K    M++K +   S T+ +++  +     ++  E   + +L+S   +  D
Sbjct: 340 --NIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPD 396



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           +K   ++  +     + +N++   I  N      +I  +C  GL+E+A     EM     
Sbjct: 612 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 671

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P++  Y ++I GY K+G+ + A     EM   N+ P   TY  +I  Y K    ++ + 
Sbjct: 672 VPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANN 731

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            L  MK  G  PD +TYN+L   F  A  +         M T+ + +   T   ++  +
Sbjct: 732 LLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 11/299 (3%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S  ++  S  +I  LC  G + EA R  +EM    L      YN++I G+   GK     
Sbjct: 461 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 520

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
               EM +  + P   TY+ L++        D+        K  G   +  TY ++++ +
Sbjct: 521 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 580

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRT 310
             A  ++ +E  +  +L+K+M L S     I+ A+   G     L  +E    + +    
Sbjct: 581 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 640

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-LRLLSHACLLSHRGI-D 368
                L+  +  + +       +D++  +     G    V C   L+   C L      +
Sbjct: 641 ATYSSLIHGVCNIGLVEDAKHLIDEMRKE-----GFVPNVVCYTALIGGYCKLGQMDTAE 695

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S   EM S  +  N  T  +++  Y K+ + +    LL ++    + PD+VT  +L + 
Sbjct: 696 STWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNG 754



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           AV  F  +      PSL+  N  +    K  +F +       M E    P   ++  +I 
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSE-GACPDVFSFTNVIN 228

Query: 218 AYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           A  K  KM + I++ +KM KL G SP+ +TYN +I      G L       + M  K + 
Sbjct: 229 ALCKGGKMENAIELFMKMEKL-GISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQ 287

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
               T  A+++  +     DK+      ++ +
Sbjct: 288 PNLKTYGALINGLIKLNFFDKVNHILDEMIGA 319



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 143/393 (36%), Gaps = 48/393 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            ++   +S QI    +  + I  S   I+  N   ++  LC++     A R  + M    
Sbjct: 366 LMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRN 425

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +PS  +   ++ G  K GK  EA      + E        T + LI          E  
Sbjct: 426 FRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEAS 485

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY--KSMLTKR-MHLRSSTMVAIL 286
             +K M   G   D ITYN LI  F   G   ++EG +  +  +TKR +     T   +L
Sbjct: 486 RIVKEMLERGLPMDRITYNALILGFCNEG---KVEGCFRLREEMTKRGIQPDIYTYNFLL 542

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
               N G LD   K +     S           + E Y K    +R++D           
Sbjct: 543 RGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA---NRIED----------- 588

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                               ++++  E+ S K+  N    NII+ A+ +  +      LL
Sbjct: 589 --------------------VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLL 628

Query: 407 SELPTRHVKPDIVTI-GILYDARRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVY 463
             + ++ + P+  T   +++    IG   D    ++  ++ GF+   V       ++  Y
Sbjct: 629 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA---LIGGY 685

Query: 464 GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
            K   +   E  +  +  ++    ++TY  +ID
Sbjct: 686 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMID 718


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + +++ +  ++W  ++++ +         ++   CE+G M+EA++ + EM      P+  
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEV 466

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y +++ GY K   F+ A   LNEM++  +S    TY+ LI          E+D  LK  
Sbjct: 467 TYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRF 526

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +G  P  +TYN +I  F  AG++    G Y+ M  K +     T  + +D Y
Sbjct: 527 LSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGY 580



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC+   + EAV  + +M+   +KPS+  Y+S++ GY + G+ +EAL   +E
Sbjct: 396 FTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSE 455

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +    P   TY  L++ Y K K +D     L  M+ +G S    TYN+LI        
Sbjct: 456 MPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNR 515

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +  ++   K  L++     + T  +I++ ++  GM+      Y+++
Sbjct: 516 VCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQM 561



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 15/290 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            N   ++  +CE   ++E ++ F   EGF   P+   YNSII+G+ K G    A     +
Sbjct: 507 INGLYMVNRVCE---VDEMLKRFLS-EGFV--PTTMTYNSIINGFVKAGMMGSAFGMYRQ 560

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M++  ++P   TY   I  Y +    D     L  ++ DG  PD   YN  I  F   G 
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           + R       +L   +    +   + +  Y N  M+ +  KFY  ++  R     ++   
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 320 LAEVY--IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
           L + +  + N  F+ L+   + +A+ +   +  +    L+H  L     ID   R   +M
Sbjct: 681 LIDGFSKVGNVAFA-LELYSEMMANHVIPDDKTFT--ALTHG-LCRSGDIDGAKRLLDDM 736

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               V  N+ T N+++ A ++    +    L  E+ +  V PD  T  IL
Sbjct: 737 RRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 26/304 (8%)

Query: 150 CEEGLME-EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C  G M  +AVR F EM G  +KP   +Y   I G  K+   + AL  L +M+E    P 
Sbjct: 195 CVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPW 254

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY  ++    K    DE + +  +M+   G   D +   +L+  +   G + +    +
Sbjct: 255 ELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLF 314

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             +++  +   + T   ++      GM D+  K  ++++             L   Y  N
Sbjct: 315 DEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGL---------LLSTYEFN 365

Query: 328 YMFSRLDDLGDD-LASRIGRTELV---WCLRLLSHACLL----SHRGIDSVVR---EMES 376
            +   L  L D      IG  ELV       + ++ CL+     H+ +   V    +M+ 
Sbjct: 366 LVIKGL--LRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKE 423

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDG 434
           A V+ ++ T + +LL Y +         L SE+P +   P+ VT   L     ++  FD 
Sbjct: 424 AGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDN 483

Query: 435 TGAL 438
             AL
Sbjct: 484 AYAL 487


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 76/145 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG  +EA +   EM    + P   IY++ IHGY K GK + A+  L +M++  
Sbjct: 520 LISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKG 579

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + TY+ LI+ + +    +EI   +  MK  G SP+ +TYN LI+ F   G++ +  
Sbjct: 580 CNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAM 639

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
                ML   +    ++   ++ AY
Sbjct: 640 PLLDEMLQNELVPNITSFDLLIKAY 664



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  +N  + +  L   G + EA    +EM    ++P+   YN I+ G  K GK  +A  
Sbjct: 315 RVESYN--RWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARR 372

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N ++   +SP   TY  L+ AY         +  L  M   GC+P+  TYN+L+Q   
Sbjct: 373 VENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLW 432

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            AG     E   + M  K   L ++    I+D       LD
Sbjct: 433 RAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLD 473



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y+ +I    K G+F+EA   L EM   ++SP S  YD  I  Y K+         
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M+  GC+P   TYNLLI+ F      + +      M  K +     T  +++ ++  
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            GM++K       +L +           L + Y K   F     + D      G+ E+++
Sbjct: 632 QGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVFDAALRTCGQKEVLY 691

Query: 352 CL 353
           CL
Sbjct: 692 CL 693



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG- 167
           R +  + R  ++  V  ++K++    ++ + F    ++  LC+ G ME A R F  M   
Sbjct: 115 RLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPAR 174

Query: 168 --FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
             F+       +  +  GY + G+  +AL  L+ M  MNL       + ++  + K  + 
Sbjct: 175 NEFS-------FGILARGYCRAGRSIDALKVLDGMPSMNLV----VCNTVVAGFCKEGLV 223

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +E +  ++ M++ G +P+ +T+N  I     AG
Sbjct: 224 EEAERLVERMRVQGLAPNVVTFNARISALCKAG 256



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           ++   C+EGL+EEA R  + M    L P++  +N+ I    K G+  +A     +M+E  
Sbjct: 213 VVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDW 272

Query: 203 MNLSPQSD--TYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +  P+ D  T+D ++  +      DE  + + +M+  G
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGG 311



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 3/203 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAF 162
           F A I  L  + R     ++F DM ++ +    R ++     ++   C+ G ++EA    
Sbjct: 245 FNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLV 304

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M        +E YN  + G  + G+  EA   L EM    + P S TY+ ++    K 
Sbjct: 305 DIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKE 364

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               +       ++    SPD +TY  L+  +   G +         M  K     S T 
Sbjct: 365 GKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTY 424

Query: 283 VAILDAYMNFGMLDKMEKFYKRL 305
             +L +    G   + E+  +R+
Sbjct: 425 NVLLQSLWRAGRTTEAERLLERM 447


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 10/263 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +EG  EEA+  +++M     KP++ +Y+ ++ G  + GK NEA   LN M    
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + TY  L++ + K  + +E     K M   GCS +   Y++LI      G +K   
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAM 487

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE-DLV--RKLA 321
             +  MLT  +   +    +I+      G +D   K Y  +L    P  + D+V    L 
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL------SHACLLSHRGIDS-VVREM 374
           +        SR  DL + +  R    +++ C   L      S++C      ++  VVR +
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLL 607

Query: 375 ESAKVRWNVTTANIILLAYLKMK 397
           +  +V    T   ++L  YL  K
Sbjct: 608 KRQRVSGACTIVEVMLGKYLAPK 630



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++ A+  F+ M      P    Y +++ G  K  + +EA+L L+EM+   
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP    Y+ LI    K      +   +  M L GC P+ +TYN LI      G L +  
Sbjct: 253 CSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAV 312

Query: 265 GTYKSMLTKR 274
              + M++ +
Sbjct: 313 SLLERMVSSK 322



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+E  ++EAV    EM+     PS  IYN +I G  K G        ++ M      P 
Sbjct: 232 LCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPN 291

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI         D+    L+ M    C P+ +TY  LI      GL+K+   T  
Sbjct: 292 EVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN-----GLVKQRRATDA 346

Query: 269 SMLTKRMHLRS 279
             L   M  R 
Sbjct: 347 VRLLSSMEERG 357



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 6/180 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG----FALKPSLEIYNSIIHGYSKIGK 189
           K  +  FNS  ++ ++  EGL    +  +  +        + P+   +N +I    K+  
Sbjct: 145 KRSVKSFNS--VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRF 202

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            + A+     M E    P   TY  L+    K +  DE  + L  M+ +GCSP  + YN+
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI      G L R+     +M  K       T   ++      G LDK     +R+++S+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/302 (19%), Positives = 114/302 (37%), Gaps = 34/302 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I  LC +G +++AV   + M      P+   Y ++I+G  K  +  +A+  L
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL 350

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M+E         Y  LI    K    +E     + M   GC P+ + Y++L+      
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G     +     M+       + T  +++  +   G+ ++  + +K +   +T    +  
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM--DKTGCSRN-- 466

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM--- 374
                     + +S L D G     R+    +VW  ++L+           S+++ +   
Sbjct: 467 ---------KFCYSVLID-GLCGVGRVKEAMMVWS-KMLTIGIKPDTVAYSSIIKGLCGI 515

Query: 375 ----------------ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                           E  K + +V T NI+L      KD      LL+ +  R   PD+
Sbjct: 516 GSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDV 575

Query: 419 VT 420
           +T
Sbjct: 576 IT 577


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  ++  L  +   ++   +F+  +   K  +  F S  ++   C+EG + EA     +M
Sbjct: 230 FGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTS--LLYGWCKEGKLMEAKHVLVQM 287

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +   ++P + +YN+++ GY++ GK  +A   L EM+     P + +Y  LIQ+  K++  
Sbjct: 288 KDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERL 347

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +E       M+ +GC  D +TY+ LI  F   G +KR
Sbjct: 348 EEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKR 384



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 22/211 (10%)

Query: 107 WAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRI------------------NEFNSQKIIG 147
           WA+I  ++  +     PQVF  + +    +R+                  +E+    ++ 
Sbjct: 176 WALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLD 235

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            LC+ G ++EA   F++M  +  KPS++ + S+++G+ K GK  EA   L +MK+M + P
Sbjct: 236 ALCKNGSVKEAASLFEDMR-YRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEP 294

Query: 208 QSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
               Y+ L+  Y +  KM D  D+ LK M+   C P+  +Y +LIQ       L+     
Sbjct: 295 DIVVYNNLLGGYAQAGKMGDAYDL-LKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRL 353

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           +  M T        T   ++  +  +G + +
Sbjct: 354 FVEMQTNGCQADVVTYSTLISGFCKWGKIKR 384



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   +++ ++   +D+ K + + R   N  +   +I  LC+   +EEA R F EM+   
Sbjct: 302 LLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNG 361

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +  +  Y+++I G+ K GK       L+EM +    P    Y  ++ A+ K +  +E  
Sbjct: 362 CQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECK 421

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             +  M+  GC+PD   YN +I+     G +K     +  M +  +     T V +++ +
Sbjct: 422 ELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGF 481

Query: 290 MNFGMLDKMEKFYKRLLN 307
           +  G L +  +++K ++ 
Sbjct: 482 LEQGCLVEACEYFKEMVG 499



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/339 (18%), Positives = 132/339 (38%), Gaps = 12/339 (3%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML---CEEGLMEEAVR 160
           D + A+I+ L   SR RQ   V+ + + + +   +    Q  + ++       ++ +AV 
Sbjct: 157 DAYKAMIKVL---SRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVE 213

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
              EM  +  +P   ++  ++    K G   EA     +M+     P    +  L+  + 
Sbjct: 214 VLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-YRWKPSVKHFTSLLYGWC 272

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     E    L  MK  G  PD + YN L+  +A AG +       K M  KR    ++
Sbjct: 273 KEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNAT 332

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +   ++ +      L++  + +  +  +           L   + K     R  +L D++
Sbjct: 333 SYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEM 392

Query: 341 ASRIG-RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
             +     ++++   +L+H           +V EM+      +++  N ++    K+ + 
Sbjct: 393 IQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEV 452

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           K    L +E+ +  + P + T  I+ +    GF   G L
Sbjct: 453 KEGIQLWNEMESSGLSPGMDTFVIMIN----GFLEQGCL 487


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 29/328 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   + +A    ++M      P++  YN++I+G+ K+G  +EA++  N+M E +
Sbjct: 108 LVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS 167

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+ LI  Y K +   +    L+ M   GC P+ ITYN L+     +G      
Sbjct: 168 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAF 227

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + ML +       T   ++D +   G LD   + ++ L+  R          L ++Y
Sbjct: 228 NLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LMTDRGC--------LPDIY 278

Query: 325 IKNYMFS------RLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVR 372
             N M S      R+DD   L + +       ++V    ++S  C  S   +D    V  
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ--VDEAYEVYE 336

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
            + +     +V T + ++    K +       LL E+      PD+V   IL      GF
Sbjct: 337 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIH----GF 392

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVL 460
               A ++ K + F  + ++    P V+
Sbjct: 393 --CKADQLDKSLAFFSEMLDKGCVPTVI 418



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R   Q + +   +EK  I   N+    II  LC+ G ++ A+  +++M+     PS+ 
Sbjct: 45  KARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHC-APSVI 103

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  ++    K  + ++A L L +M E   +P   TY+ LI  + K    DE  +    M
Sbjct: 104 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163

Query: 236 KLDGCSPDHITYNLLIQEFA 255
             + CSPD  TYN+LI  + 
Sbjct: 164 LENSCSPDVFTYNILIDGYC 183



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 118 RSRQIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R ++  + +D++KN        +      +I   C+    ++A R   EME   + P   
Sbjct: 10  RKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNA 69

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN+II G    G+ + AL+   +M+  + +P   TY  L+ A  K     +  + L+ M
Sbjct: 70  VYNTIIKGLCDNGRVDSALVHYRDMQR-HCAPSVITYTILVDALCKSARISDASLILEDM 128

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              GC+P+ +TYN LI  F   G +      +  ML         T   ++D Y
Sbjct: 129 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 101/287 (35%), Gaps = 34/287 (11%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C++   ++  +  QEM  +  +P+   YN+++    K GK+ +A      
Sbjct: 173 FTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQM 232

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M   +  P   T++ +I  + K    D      ++M   GC PD  TYN++I     A  
Sbjct: 233 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 292

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +       + M          T  +I+        +D+  + Y+ L N    L       
Sbjct: 293 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCST 352

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           L +   K+    RLDD                                + ++REME    
Sbjct: 353 LIDGLCKS---RRLDD-------------------------------AEKLLREMERNGS 378

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             +V    I++  + K           SE+  +   P ++T  I+ D
Sbjct: 379 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVID 425



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 80  LIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE 139
           L++R+ +   CP  ++ ++         +++  L  +S+  +  +V+++ +N     ++ 
Sbjct: 299 LLERMTE-AGCPPDVVTYN---------SIVSGLCKASQVDEAYEVYEVLRN-GGYFLDV 347

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
                +I  LC+   +++A +  +EME     P +  Y  +IHG+ K  + +++L F +E
Sbjct: 348 VTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSE 407

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           M +    P   TY  +I    K     +  M LK M
Sbjct: 408 MLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 443


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 139/352 (39%), Gaps = 19/352 (5%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F +   + K  I  N +    II  LC+ G  E A    ++M    LKP+  +Y  +I
Sbjct: 436 EAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GY + G F+ A   L +M   NL+P    Y+ LI         DE       M   G  
Sbjct: 496 SGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ 555

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+  TY  LI  ++ AG L++ E     ML   ++        IL+ Y     L+K+   
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
            K +L     L  D   +L  + I N   S        + S I +  LV     L +  L
Sbjct: 616 LKSMLEKG--LMPD--NRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVP--DSLIYGSL 669

Query: 362 LSH--RGID-----SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +S   +  D      ++ EM    +   ++  N ++  + K  D  H R + + +  + +
Sbjct: 670 ISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGL 729

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKG 466
            P+ VT   L D      D   A++++  +     T  +  D  V +V   G
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEM----LTEGVAPDAFVYSVLAAG 777



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 62/134 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +IG LC  G +EEA    +EME + L P    Y +II+G  K G+ ++A   
Sbjct: 276 LNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCL 335

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM    L P    Y  LI  + +    DE    +K M   G  P+ ITY+ LI+    
Sbjct: 336 LDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCK 395

Query: 257 AGLLKRMEGTYKSM 270
            G + R     K M
Sbjct: 396 LGRMGRASRILKQM 409



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+  I + F   K +E   +  + F    II  LC+ G  ++A     EM    L P++ 
Sbjct: 290 RAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVV 349

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y+++I G+ + G  +EA   + EM    + P   TYD LI+   K          LK M
Sbjct: 350 VYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQM 409

Query: 236 KLDGCSPDHITYNLLIQ 252
              G   D +TYNL+I+
Sbjct: 410 TKIGYMADTMTYNLVIE 426



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 73/172 (42%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA     EM    + P++  Y+ II+G  +IG+   A   L +M    L P +  Y  L
Sbjct: 435 EEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPL 494

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  Y +   +      LK M  +  +PD   YN LI   +  G +      Y  ML K  
Sbjct: 495 ISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGF 554

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
                T   ++  Y   G L+K E+   ++LNS     + +  ++ E Y K+
Sbjct: 555 QPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKS 606



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 10/195 (5%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R     + F + K +  + +  N+     +I  LC+ G M  A R  ++M          
Sbjct: 360 RQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTM 419

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+ +     EA L LNEM++  +SP   TY  +I    +    +     L+ M
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM 479

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM----LTKRMHLRSSTMVAILDAYMN 291
             DG  P+   Y  LI  +   G       T K M    LT  ++  +S ++ +     N
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL----SN 535

Query: 292 FGMLDKMEKFYKRLL 306
            G +D+  ++Y  +L
Sbjct: 536 VGKMDEAIEYYDEML 550



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/451 (19%), Positives = 174/451 (38%), Gaps = 43/451 (9%)

Query: 52  SAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR 111
           SAP+ D  +    +L     +     N L+ ++ +    P  +L            +V R
Sbjct: 116 SAPAPDAFAHLAVSLCAAGLYPQA--NGLLDQMIRAYPTPPLVLS-----------SVHR 162

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            L  S + R+ P V D+  +  K                + G + +       M+   L 
Sbjct: 163 ALSGSDQGRR-PVVLDVLVDTYK----------------KTGRVRDGAEVVLLMKDLGLA 205

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PSL   N ++    +    +        M+   +SP   TY  LI+AY K +  +     
Sbjct: 206 PSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKV 265

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           ++ M+  GCS + +TYN LI     AG ++   G  K M    +     T  AI++    
Sbjct: 266 VEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCK 325

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
            G  D+ +     +  S   L  ++V    L + +++         +  ++++   +   
Sbjct: 326 RGRPDQAKCLLDEM--SCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNK 383

Query: 350 VWCLRLLSHACLLSHRGIDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           +    L+   C L   G  S ++++M       +  T N+++  +L+  + +   +LL+E
Sbjct: 384 ITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNE 443

Query: 409 LPTRHVKPDIVTIGILYDAR-RIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           +    + P++ T  I+ +   +IG     +  + + I    K       PL+     +G 
Sbjct: 444 MRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGS 503

Query: 468 FLRYCEEVYSSLEPYSRE---KKRWTYQNLI 495
           F   CE    +L+  +RE      + Y +LI
Sbjct: 504 FSLACE----TLKKMTRENLTPDLYCYNSLI 530


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 138/318 (43%), Gaps = 14/318 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-EM 203
           +I    E G ++EA++ FQ+M+    KP+   +N++I GY   GK  E L  L+ M  + 
Sbjct: 134 MINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDG 193

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           ++ P   TY+ L++A+   K  +E    L  M   G  PD +TYN+L + +A  G   R 
Sbjct: 194 SVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRA 253

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRK 319
           E     M  +++     T   I++ Y   G + +  +F  R+    ++    +   L++ 
Sbjct: 254 EDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKG 313

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
             ++   + +   L  L ++   +         +   S A L+       +  +M  A +
Sbjct: 314 FLDITDTDGVDEAL-TLMEEYGVKPDVITFSTIMNAWSSAGLMDK--CQEIFNDMAKAGI 370

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             ++   +I+   Y++  + ++   +L+ +    V+P++V    +      G+   G +E
Sbjct: 371 EPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIIS----GWCSAGKME 426

Query: 440 MWKRIGFLFKTVEINTDP 457
             K +    K  EI   P
Sbjct: 427 NAKMV--YEKMCEIGISP 442



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           EK   NE     I+   C+EG M EA+R    M+   + P+L I+NS+I G+  I   + 
Sbjct: 263 EKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDG 322

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
               L  M+E  + P   T+  ++ A+    + D+       M   G  PD   +++L +
Sbjct: 323 VDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAK 382

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +  AG  +  E    SM    +         I+  + + G ++  +  Y+++
Sbjct: 383 GYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKM 435



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 108/296 (36%), Gaps = 48/296 (16%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             ++E   +KP   +YN++I+ +S+ G   EA+    +MK+    P + T++ LI+ YG 
Sbjct: 116 ISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGN 175

Query: 222 YKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
               +E    L +M LDG   P+  TYN+L++ +     ++        M+   +     
Sbjct: 176 AGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVV 235

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +  AY   G   + E     +   +    E     +   Y K              
Sbjct: 236 TYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCK-------------- 281

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
                   ++  LR                V  M+   V  N+   N ++  +L + D  
Sbjct: 282 -----EGNMIEALRF---------------VYRMKELGVHPNLVIFNSLIKGFLDITDTD 321

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
            +   L+ +    VKPD++T   + +A             W   G + K  EI  D
Sbjct: 322 GVDEALTLMEEYGVKPDVITFSTIMNA-------------WSSAGLMDKCQEIFND 364



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 121/306 (39%), Gaps = 16/306 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +  +EEA     +M    ++P +  YN +   Y++ G+   A   + EM+   ++P  
Sbjct: 210 CSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNE 269

Query: 210 DTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            T   ++  Y K   M + +    +M +L G  P+ + +N LI+ F        ++    
Sbjct: 270 RTCGIIVNGYCKEGNMIEALRFVYRMKEL-GVHPNLVIFNSLIKGFLDITDTDGVDEALT 328

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M    +     T   I++A+ + G++DK ++ +  +  +           LA+ Y++  
Sbjct: 329 LMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAG 388

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
                + +   +A    R  +V C  ++S  C          V  +M    +  N+ T  
Sbjct: 389 ETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFE 448

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
            ++  Y + +       LL  +  + V P+  TI ++ DA             W+ IG L
Sbjct: 449 TLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADA-------------WRNIGLL 495

Query: 448 FKTVEI 453
            +   I
Sbjct: 496 CEAKRI 501



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GLM++    F +M    ++P +  ++ +  GY + G+   A   L  M +  + P     
Sbjct: 353 GLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVIC 412

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I  +      +   M  + M   G SP+  T+  LI  +A A    + E   + M  
Sbjct: 413 TTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEE 472

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
           K +    ST+  + DA+ N G+L + ++  K
Sbjct: 473 KGVFPEKSTIQLVADAWRNIGLLCEAKRITK 503



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 45/273 (16%)

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK +EA L  + + E    P   TY  L+ A  K K ++ I + +  ++ +G  PD I Y
Sbjct: 72  GKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILY 131

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N +I  F+ +G +K     ++ M        +ST   ++  Y N G   K E+  K L  
Sbjct: 132 NAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAG---KPEEGLKML-- 186

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
                   L+     V   +  ++ L                 WC          S + I
Sbjct: 187 -------HLMSLDGSVKPNDRTYNILVR--------------AWC----------SKKNI 215

Query: 368 D---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +   +V+ +M ++ ++ +V T NI+  AY +  +      L+ E+    V P+  T GI+
Sbjct: 216 EEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGII 275

Query: 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
            +    G+   G   M + + F+++  E+   P
Sbjct: 276 VN----GYCKEG--NMIEALRFVYRMKELGVHP 302


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 138/342 (40%), Gaps = 44/342 (12%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R L   S+ ++   V  +W+ ++   I  N      ++   C    +  A+    +M   
Sbjct: 86  RLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKL 145

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +PS+  + S+++G+ +  +  +AL   ++M  M   P    Y+ +I    K K  D  
Sbjct: 146 GHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNA 205

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M+ DG  PD +TYN LI     +G           M  + ++    T  A++DA
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
            +  G + + E+FY+ ++  R  L  D+V     +Y    M+SRLD+  +          
Sbjct: 266 CVKEGRVSEAEEFYEEMI--RRSLDPDIVTYSLLIY-GLCMYSRLDEAEEMFGF------ 316

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                 ++S  C                     +V T +I++  Y K K  +H   L  E
Sbjct: 317 ------MVSKGCFP-------------------DVVTYSILINGYCKSKKVEHGMKLFCE 351

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTGAL----EMWKRIGF 446
           +  R V  + VT  IL      G+   G L    E+++R+ F
Sbjct: 352 MSQRGVVRNTVTYTILIQ----GYCRAGKLNVAEEIFRRMVF 389



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +E  ++ F EM    +  +   Y  +I GY + GK N A      M    
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           + P   TY+ L+         ++  + L  M+ +G   D +TYN++I+    AG
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAG 445



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+    +M+   +   +  YN II G  K G+  +A      +    L P 
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
             TY  ++    K  +  E D   + MK DG  P+ 
Sbjct: 466 IWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+NE     +I   C++G +++A+ A +EM    ++PS+  YN++I+GY K+G+ + A  
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 384

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEF 254
            + EM+   + P   TY  +I  Y K    D    +  KM+K  G  PD ITY+ LI+  
Sbjct: 385 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAITYSSLIRGL 443

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                L      +++ML   +     T   ++D +   G ++K    +  ++
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC  G +EEAV    +M G    P+   YN+++  + + G+ + A   +
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 198 NEMK-EMNLSPQSDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           + M+ E N  P   T++ ++          G  K++DE       M  +G +PD ++YN 
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE-------MVREGLAPDVVSYNT 263

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           L+  +   G L      +  M  + +     T  +++ A    G L++      ++    
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDD--LGDDLASRIGRTELVWCLR-LLSHACLLSHRG 366
             + E     L + + K      LDD  L  +   + G    V C   L++  C L    
Sbjct: 324 LRMNEVTFTALIDGFCKKGF---LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380

Query: 367 ID-SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   ++REME+ +V+ +V T + I+  Y K+ +      L  ++  + V PD +T
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  FNS  ++  LC+ G ME A + F EM    L P +  YN+++ GY K+G  +E+
Sbjct: 220 KPNLVTFNS--MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L   +EM +  L P   T+  LI A  K    ++    +  M+  G   + +T+  LI  
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           F   G L       + M  ++  ++ S +   A+++ Y   G +D   +  + +   R  
Sbjct: 338 FCKKGFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-- 393

Query: 312 LKEDLV 317
           +K D+V
Sbjct: 394 VKPDVV 399



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 18/276 (6%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +  A R    M    + P++  YN ++      G+  EA+  + +M+    +P + TY+ 
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYK---SM 270
           L+ A+ +    D  +  + +M+ +G   P+ +T+N ++     AG   RMEG  K    M
Sbjct: 193 LVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG---RMEGARKVFDEM 249

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNY 328
           + + +     +   +L  Y   G L +    +  +  ++  L  D+V    L     K  
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM--TQRGLVPDVVTFTSLIHATCKAG 307

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI--DSV--VREMESAKVRWNVT 384
              +   L   +  R  R   V    L+   C    +G   D++  V EM    ++ +V 
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGFC---KKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             N ++  Y K+      R L+ E+  + VKPD+VT
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT 400



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I  LCEE  + +A   F+ M    ++P    Y ++I G+ K G   +AL   +EM  
Sbjct: 437 SSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-------------- 248
             + P   TY  LI    K     E    L  +  +   PD+I Y+              
Sbjct: 497 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSV 556

Query: 249 -LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             L++ F   GL+K  +  Y+SML +   L  S    ++  +   G + K   F+K++L 
Sbjct: 557 VALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLR 616

Query: 308 S 308
           S
Sbjct: 617 S 617



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+ A    +EME   +KP +  Y++II GY K+G  + A     +M +  
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P + TY  LI+   + K + D  ++   M++L G  PD  TY  LI      G +++ 
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 264 EGTYKSMLTK 273
              +  M+ K
Sbjct: 488 LSLHDEMIRK 497



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 139 EFNSQKIIGML---CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           EF S  ++ +L   C +GLM+EA + +Q M     K    +Y+ +IHG+ + G   +AL 
Sbjct: 552 EFKS--VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 609

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           F  +M     SP S +   L++   +  M  E D  ++   L  C P
Sbjct: 610 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ--DLLTCCP 654


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 9/352 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEME 166
           ++R L N     +  + FD +  + + R NE    +  +I  L   G +E A   F+   
Sbjct: 156 LLRELGNRGECWKAIRCFD-FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETAL 214

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-Y 225
                 ++  ++++I  Y K G F+EA+     MK   L P   TY+ +I A GK  + +
Sbjct: 215 SEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEF 274

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
             +    + M  +G  PD ITYN L+   +  GL +     +  M+ + +     T   +
Sbjct: 275 KRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTL 334

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS-RI 344
           LDA    G +D   +    +   +          +A+ Y K        +L +++    I
Sbjct: 335 LDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGI 394

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           G   + +   L  +A L        V +EM S+ V+ +V T N +L  Y K   F  +  
Sbjct: 395 GLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTR 454

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
           +  E+    V P+++T   L D    G     A+E+++     FK   +  D
Sbjct: 455 VFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFRE----FKQAGLKAD 502



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           ++   W   R L N    R I Q             + F    ++  +C+ G M+ A   
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQ-------------DVFTYNTLLDAVCKGGQMDLAYEI 350

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             EM G  + P++  Y+++  GY+K G+  +AL   NEMK + +     +Y+ L+  Y K
Sbjct: 351 MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
              +++     K M   G   D +TYN L+  +   G    +   +K M   R+     T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              ++D Y    + ++  + ++     +  LK D+V
Sbjct: 471 YSTLIDVYSKGSLYEEAMEVFREF--KQAGLKADVV 504



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A++  +EM    +K  +  YN+++ GY K GKFNE      EMK+  + P   TY
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  Y K  +Y+E     +  K  G   D + Y+ LI      GL+         M  
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 273 KRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           + +     T  +I+DA+        ++D +    +R   S T +  + V +    +   +
Sbjct: 532 EGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDGH 591

Query: 329 MFSRLDDL-----GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           +F     L     G     R+G+ E+               R I SV ++M   +++ NV
Sbjct: 592 VFKFYQQLVSEKEGPAKKERLGKEEI---------------RSILSVFKKMHELEIKPNV 636

Query: 384 TTANIILLAYLKMKDFKHLRVLLSEL 409
            T + IL A  + K  +   +LL EL
Sbjct: 637 VTFSAILNACSRCKSIEDASMLLEEL 662



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 10/279 (3%)

Query: 120 RQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +++ ++F+ M +N ++  RI  +NS  ++ +    GL E A   F EM    +   +  Y
Sbjct: 275 KRVVEIFEEMLRNGVQPDRIT-YNS--LLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTY 331

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++    K G+ + A   + EM    + P   TY  +   Y K    ++       MK 
Sbjct: 332 NTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF 391

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G   D ++YN L+  +A  G  +      K M +  +     T  A+LD Y   G  ++
Sbjct: 392 LGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           + + +K +   R          L +VY K  ++    ++  +      + ++V    L++
Sbjct: 452 VTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELIN 511

Query: 358 HACLLSHRGIDSVV---REMESAKVRWNVTTANIILLAY 393
             C   +  +DS V    EM    +R NV T N I+ A+
Sbjct: 512 ALC--KNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF 548



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L    +  +  +V  ++K ++K R+  N      +I +  +  L EEA+  F+E +   
Sbjct: 439 LLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAG 498

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           LK  + +Y+ +I+   K G  + A+L L+EM +  + P   TY+ +I A+G+
Sbjct: 499 LKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           CE G M+E      EME  A+ P+   Y  +I G  +  K +E+L  L  M    L P S
Sbjct: 597 CEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDS 656

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +IQ + K K   +      MM L  C P  +TY +LI      G LK ++    S
Sbjct: 657 VTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +  + + L+  T + I+ A+   G + K   ++ ++L
Sbjct: 717 IEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQML 753



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 129 WKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +K IE+     +  FN+  +I   C  G + EA +  + +    L PS+  Y ++++ Y 
Sbjct: 540 YKMIERGITPSVVTFNT--LINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYC 597

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDH 244
           ++G   E   FL+EM+   + P   TY  LI+   +  KM++ + + L+ M   G  PD 
Sbjct: 598 EVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQL-LEYMYAKGLLPDS 656

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN +IQ F     + +    Y  ML         T   +++A   FG L  +++    
Sbjct: 657 VTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 305 LLNSRTPLKE 314
           + +    LK+
Sbjct: 717 IEDRNITLKK 726



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 150/369 (40%), Gaps = 26/369 (7%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GLM  A +  Q+M    L P L  Y ++I G+ ++G   EAL    E            Y
Sbjct: 355 GLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFY 414

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+    K    +E       M+     PD I Y++LI      G ++R    Y+ M  
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRL 474

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           KR         A+L      G + +   ++     +R  L ED+V  L  + I  Y+  R
Sbjct: 475 KRKFPHHFAQRAVLLGLFKNGNISEARNYFDTW--TRMDLMEDVV--LYNIMIDGYV--R 528

Query: 333 LDDLGD------DLASRIGRTELVWCLRLLSHAC----LLSHRGIDSVVREMESAKVRWN 382
           LD + +       +  R     +V    L++  C    L+  R +  V+R      +  +
Sbjct: 529 LDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR---LKGLVPS 585

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALE 439
           V T   ++ AY ++ + + +   L E+    V P  VT  +L      +    +    LE
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID-LV 498
                G L  +V  NT   ++  + KG  +    ++Y+ +  ++ +  + TY+ LI+ L 
Sbjct: 646 YMYAKGLLPDSVTYNT---IIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALC 702

Query: 499 IKHNGKNLD 507
           I  + K++D
Sbjct: 703 IFGDLKDVD 711



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 28/228 (12%)

Query: 26  KNKLTHDRVFFAKTLIRKPISCCCLSSAPSLD--YHSTKHTTLLVESYHEHQALNALIQR 83
           ++++ HD +F    +I K       +S P+ +   H+ +HT ++ + Y+E +   A    
Sbjct: 182 RHEMIHDALF----VIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGA---- 233

Query: 84  LNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
              +  C   IL H G   +      I FL +S++             +    I   N+ 
Sbjct: 234 --PQSECTTSILIH-GLCEQSKLEDAISFLHDSNK-------------VVGPSIVSINT- 276

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            I+   C+ GL++ A   F  M    L      YN ++HG    G  +EAL F ++M++ 
Sbjct: 277 -IMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKH 335

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            + P   TY+ L + +    +       ++ M L G +PD +TY  LI
Sbjct: 336 GVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLI 383



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           FD W  ++        +  I G +  +G+  EA++ + +M    + PS+  +N++I+G+ 
Sbjct: 504 FDTWTRMDLMEDVVLYNIMIDGYVRLDGI-AEAMQLYYKMIERGITPSVVTFNTLINGFC 562

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           + G   EA   L  ++   L P   TY  L+ AY +     E+   L  M+ +   P H+
Sbjct: 563 RRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHV 622

Query: 246 TYNLLIQ 252
           TY +LI+
Sbjct: 623 TYTVLIK 629



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 1/171 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  M E+++  + M    L P    YN+II  + K  +  +AL   N M   N
Sbjct: 627 LIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN 686

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI A   +    ++D  +  ++    +    TY  +I+     G + +  
Sbjct: 687 CDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKAL 746

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKE 314
           G +  ML K   +      A+++     G++ + + F+  +L+   TP  E
Sbjct: 747 GYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPE 797



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 36/212 (16%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG------- 188
           ++N      ++  LC+ G +EEA+  F EME   L+P   +Y+ +IHG  K G       
Sbjct: 408 KLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQ 467

Query: 189 -------------KFNEALLFLNEMKEMNLSPQSDTYD-----GLIQAYGKYKM----YD 226
                         F +  + L   K  N+S   + +D      L++    Y +    Y 
Sbjct: 468 LYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYV 527

Query: 227 EIDMCLKMMKL------DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
            +D   + M+L       G +P  +T+N LI  F   G L       + +  K +     
Sbjct: 528 RLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVV 587

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
           T   +++AY   G + +M  F   +  N+  P
Sbjct: 588 TYTTLMNAYCEVGNMQEMFHFLHEMEANAVVP 619



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 3/190 (1%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R    ++D++  I+ S    +E  +  +I  LCE+  +E+A+ +F       + PS+   
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAI-SFLHDSNKVVGPSIVSI 274

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+I+  + K+G  + A      M +  L   S +Y+ L+         DE       M+ 
Sbjct: 275 NTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEK 334

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  PD +TYN L + F   GL+       + ML + ++    T   ++  +   G +++
Sbjct: 335 HGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEE 394

Query: 298 MEKFYKRLLN 307
             K  +  L+
Sbjct: 395 ALKLRQETLS 404


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 15/295 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C  GL+E+A   F EM+ + L  S  +YNS I+G  K G  N+A    
Sbjct: 196 NEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIF 255

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             MK     P ++TY  LI  YGK  K +  + +  +M+    C P+  TY  L+  FA 
Sbjct: 256 LRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLS-HKCKPNICTYTALVNAFAR 314

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            GL ++ E  ++ M    +     +  A+++AY   G      + +  + +         
Sbjct: 315 EGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRAS 374

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-------RGIDS 369
              L + Y +    +  + + +D+  R+G T       + SH  LLS           + 
Sbjct: 375 YNILVDAYGRAGFLNDAEAVFEDM-KRVGITP-----TMKSHMVLLSAFSKTGNVSKCED 428

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           ++ +M  + ++ +    N +L  Y ++  F  +  +L+ +     + DI T  IL
Sbjct: 429 ILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNIL 483



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 5/251 (1%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  L + G   +A   F  M+    KPS E Y  +I+ Y K GK   AL   NEM     
Sbjct: 239 INGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKC 298

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L+ A+ +  + ++ +   + M+  G  PD  +YN L++ ++ AG       
Sbjct: 299 KPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAE 358

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAEV 323
            +  M         ++   ++DAY   G L+  E  ++ +  +     +K  +V  L   
Sbjct: 359 IFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMV--LLSA 416

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWN 382
           + K    S+ +D+ + +     + +      +L+    L   G ++ V+  ME+     +
Sbjct: 417 FSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEAD 476

Query: 383 VTTANIILLAY 393
           ++T NI++  Y
Sbjct: 477 ISTYNILINRY 487



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 61/115 (53%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G + +A   F++M+   + P+++ +  ++  +SK G  ++    LN+M +  L   +   
Sbjct: 386 GFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVL 445

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           + ++  YG+   + +++  L +M+   C  D  TYN+LI  +  AG + +MEG +
Sbjct: 446 NSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 35/204 (17%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K + N      ++     EGL E+A   F++M+   L+P +  YN+++  YS+ G    A
Sbjct: 297 KCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGA 356

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               + M+ M   P   +Y+ L+ AYG+    ++ +   + MK  G +P   ++ +L+  
Sbjct: 357 AEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSA 416

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRS---------------------------------- 279
           F+  G + + E     M    + L +                                  
Sbjct: 417 FSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEAD 476

Query: 280 -STMVAILDAYMNFGMLDKMEKFY 302
            ST   +++ Y   G +DKME  +
Sbjct: 477 ISTYNILINRYGQAGFIDKMEGLF 500



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 15/261 (5%)

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           I +C  ++       D I YNLLI  F    L K  E TY  +L  R      T   ++ 
Sbjct: 146 ISICRWILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIK 205

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           AY   G+L+K E  +  + N   P    +       YI   M     +  +++  R+ R 
Sbjct: 206 AYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNS----YINGLMKGGNPNKAEEIFLRMKRD 261

Query: 348 ELVWCLRLLSHACLLSHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFK 400
                    ++  L++  G D        V  EM S K + N+ T   ++ A+ +    +
Sbjct: 262 GCKPSTE--TYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCE 319

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
               +  ++    ++PD+ +   L +A  R GF   GA E++  +  +    +  +  ++
Sbjct: 320 KAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFP-YGAAEIFSLMQHMGCEPDRASYNIL 378

Query: 460 LAVYGKGHFLRYCEEVYSSLE 480
           +  YG+  FL   E V+  ++
Sbjct: 379 VDAYGRAGFLNDAEAVFEDMK 399


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 1/288 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I  LC+    ++A R F+EM G  L+P+   Y  +IH   K G   +AL   
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M++  +      Y+ LI  Y K    D     L  M  +G +P   +Y+ LI      
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      ++ M  + +   + T  A+++ +     +D+  + + ++++S     E   
Sbjct: 457 GDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
             + E Y       +   L D +     + +      L+S  CL S     +  V ++E+
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +    N  +   +L  + +   F     L  E+  R VK D+V+  I+
Sbjct: 577 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTII 624



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   ++     EG   E    + EM    +K  L  +  I++   K     ++ + 
Sbjct: 581 LNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMKE  + P    Y  +I A  K +   +   C   M +DG SP+ +T+ +LI     
Sbjct: 641 FREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCK 700

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +G L   E   K ML   +     T    LD +   G ++K +  +  +L  
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQG 752



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 117/310 (37%), Gaps = 35/310 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R ++  +V ++  NI  +  +E   + ++   C    +E A+R   +M      PS    
Sbjct: 248 RVQEAVEVKNVMVNIGVTA-DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANC 306

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           + +I    K     EA     ++ ++ + P    Y+ LI    K + +D+ D   K M  
Sbjct: 307 SFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAG 366

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+ +TY +LI      G+++     +  M  K + +      ++++ Y   G LD+
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDR 426

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                  +      +KE L    A        +S L      +A      +L  C+ L  
Sbjct: 427 ARGLLSGM------VKEGLTPTAAS-------YSPL------IAGLCRNGDLSSCMEL-- 465

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           H             REM    + WN  T   ++  + K K       L  ++   +V P+
Sbjct: 466 H-------------REMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 418 IVTIGILYDA 427
            VT  ++ + 
Sbjct: 513 EVTFNVMIEG 522



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 1/151 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F     +     EG ME+A      M    L  S+  +N +I G  K GK  EA+  +
Sbjct: 722 NKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLM 780

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +++ E   SP   +Y  +I    K    ++       M   G  PD + YN+ I+     
Sbjct: 781 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 840

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           G   +  G Y +M+   +     T  A+L  
Sbjct: 841 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 89  SCPLQILQHDGDWTK----------DHFWAVIRF---LKNSSRSRQIPQVFDMWKNIEKS 135
           +C L     +GD  K           H  +++ F   +K   ++ +I +  D+   I +S
Sbjct: 727 NCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITES 786

Query: 136 RINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
             +    +   II  LC+ G + +A   + EM    LKP +  YN  I   +  G+ ++A
Sbjct: 787 GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           L     M    + P  DTY  L+        YD
Sbjct: 847 LGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 8/201 (3%)

Query: 79  ALIQRLNKKVSCPL-QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN--IEKS 135
           A +++ +K+ SC L + ++  G    D F+  +  +   S+   + Q  + W    ++  
Sbjct: 627 AALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM--IDALSKEENMIQALNCWDQMVVDGY 684

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
             N      +I  LC+ G +  A    +EM    + P+   YN  +  ++  G   +A  
Sbjct: 685 SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD 744

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             + M + +L+    +++ LI+   K  K+ + ID+  K+ +  G SPD I+Y+ +I E 
Sbjct: 745 LHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLMSKITE-SGFSPDCISYSTIIHEL 802

Query: 255 ACAGLLKRMEGTYKSMLTKRM 275
              G + +    +  ML K +
Sbjct: 803 CKMGDINKAFELWNEMLYKGL 823


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 22/249 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+E+Y +    N   A+ +R+ K    P              +  +++     ++ R+
Sbjct: 175 TALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFT----------YQIILKTFVQGNKFRE 224

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLC----EEGLMEEAVRAFQEMEGFALKPSLEIY 177
             ++FD   N E S +     QK+  M+     + G  E+A + F +M    ++ +   Y
Sbjct: 225 AEELFDNLLNDENSPLKP--DQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTY 282

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   S    + E     ++M+  +L P   +Y  L+ AYGK +  +E     + M  
Sbjct: 283 NSLM---SFETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLD 339

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P    YN+L+  F+ +G++++ +  +KSM   R      +   +L AY+N   ++ 
Sbjct: 340 AGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEG 399

Query: 298 MEKFYKRLL 306
            EKF+KRL+
Sbjct: 400 AEKFFKRLI 408



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  +S  G   +A      M+     P   +Y  +
Sbjct: 328 EEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTM 387

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +  DG  P+ +TY  LI+ +A    L+ +   Y+ ML + +
Sbjct: 388 LSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGI 447

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
               + +  I+DAY   G  D    ++K + ++  P
Sbjct: 448 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIP 483



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 42/255 (16%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L  M +   +P   +   L++AYGK   Y+  +   + M+  G
Sbjct: 142 LITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWG 201

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P   TY ++++ F      +  E  + ++L                            
Sbjct: 202 PEPSAFTYQIILKTFVQGNKFREAEELFDNLLN--------------------------- 234

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
                  +  +PLK D  +K+  + I  YM  +         +     EL      +++ 
Sbjct: 235 -------DENSPLKPD--QKMFNMMI--YMHKKAGSYEKARKTFAQMAELGIQQTTVTYN 283

Query: 360 CLLS----HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
            L+S    ++ + ++  +M+ A +R +V +  +++ AY K +  +    +  E+    ++
Sbjct: 284 SLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIR 343

Query: 416 PDIVTIGILYDARRI 430
           P      IL DA  I
Sbjct: 344 PTRKAYNILLDAFSI 358



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A + F+ +     +P++  Y ++I GY+KI      +    EM    +         
Sbjct: 397 MEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTT 456

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++ AYGK   +D      K M+ +G  PD    N+L+
Sbjct: 457 IMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLL 493



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 134/357 (37%), Gaps = 59/357 (16%)

Query: 135 SRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
            ++ +FN ++K++G++ + G                  P++    +++  Y K G++N A
Sbjct: 147 GKLGDFNGAEKVLGLMNKNGY----------------APNVVSQTALMEAYGKGGRYNNA 190

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS---PDHITYNLL 250
                 M++    P + TY  +++ + +   + E +     +  D  S   PD   +N++
Sbjct: 191 EAIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMM 250

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--- 307
           I     AG  ++   T+  M            + I    + +  L   E  YK + N   
Sbjct: 251 IYMHKKAGSYEKARKTFAQMAE----------LGIQQTTVTYNSLMSFETNYKEVSNIYD 300

Query: 308 --SRTPLKEDLVRK--LAEVYIKN-------YMFSRLDDLGDDLASRIGRTELVWCLRLL 356
              R  L+ D+V    L   Y K         +F  + D G     R  R      L   
Sbjct: 301 QMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAG----IRPTRKAYNILLDAF 356

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           S + ++      +V + M   +   ++ +   +L AY+   D +        L     +P
Sbjct: 357 SISGMVEQ--AQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEP 414

Query: 417 DIVTIGILYDARRIGFDGTGALEMW--KRIGFLFKTVEINTDPL--VLAVYGK-GHF 468
           ++VT G L      G+     LEM   K    L + ++ N   L  ++  YGK G F
Sbjct: 415 NVVTYGTLIK----GYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDF 467


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           R+I  V D  ++ +  + +EF    ++     EGL+ EA   F E++    +P    YN+
Sbjct: 263 RKILGVLDEMRS-KGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++  + K G + EAL  L EM+E +    S TY+ L+ AY +     E    ++MM   G
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381

Query: 240 CSPDHITYNLLIQEFACAG 258
             P+ ITY  +I  +  AG
Sbjct: 382 VMPNAITYTTVIDAYGKAG 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 110/285 (38%), Gaps = 51/285 (17%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------------------- 189
           G  E+A+  F+ M+     P+L  YN I+  + K+G+                       
Sbjct: 224 GKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFT 283

Query: 190 -------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                          EA  F  E+K     P + TY+ L+Q +GK  +Y E    LK M+
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C  D +TYN L+  +  AG  K   G  + M  K +   + T   ++DAY   G  D
Sbjct: 344 ENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKED 403

Query: 297 KMEKFYKRLLNS----RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           +  K +  +  +     T     ++  L +    N M   L D+  +  S        W 
Sbjct: 404 EALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCS---PNRATWN 460

Query: 353 LRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAY 393
             L     L  ++G+D     V REM+S     +  T N ++ AY
Sbjct: 461 TML----ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 7/280 (2%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +++      G  +EA    + M    + P+   Y ++I  Y K GK +EAL     MKE 
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P + TY+ ++   GK    +E+   L  MK +GCSP+  T+N ++      G+ K +
Sbjct: 416 GCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRK 319
              ++ M +        T   ++ AY   G      K Y  +     N+       L+  
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           LA    K    S  + + D  +     TE  + L L  +A   ++ GI+ +   ++  ++
Sbjct: 536 LAR---KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQI 592

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             +      +LLA  K +         +       KPD+V
Sbjct: 593 FPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMV 632



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ M    G   +A    + +E   LKP L  YN++I G+ + G   EA+  L+EM E  
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           + P   TY+  +  Y    M+ EI+  ++ M  + C P+ +T+ +++  +  AG
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 24/325 (7%)

Query: 108 AVIRFLKNSSRSRQ-IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AV+  L   SRS + I  + DM  N      N      ++ +   +G+ +   R F+EM+
Sbjct: 426 AVLSLLGKKSRSNEMIKMLCDMKSN--GCSPNRATWNTMLALCGNKGMDKFVNRVFREMK 483

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P  + +N++I  Y + G   +A     EM     +    TY+ L+ A  +   + 
Sbjct: 484 SCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 543

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYK--SMLTKRMHLRSST 281
             +  +  MK  G  P   +Y+L++Q +A  G    ++R+E   K   +    M LR+  
Sbjct: 544 SGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRT-- 601

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDD 339
              +L A      L   E+ +   L  +   K D+V    +  ++ +N M+ + + + + 
Sbjct: 602 ---LLLANFKCRALAGSERAFT--LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILES 656

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLK 395
           +       +LV    L+    +   RG     + +++ +E ++++ ++ + N ++  + +
Sbjct: 657 IREDGLSPDLVTYNSLMD---MYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCR 713

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVT 420
               +    +LSE+  R ++P I T
Sbjct: 714 RGLMQEAVRMLSEMTERGIRPCIFT 738



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +I+H YS+ GK+ +A+     MKEM  SP   TY+ ++  +GK  + + +I   L  M
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   D  T + ++   A  GLL+  +  +  + +      + T  A+L  +   G+ 
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVY 332

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            +     K +  +  P       +L   Y++
Sbjct: 333 TEALSVLKEMEENSCPADSVTYNELVAAYVR 363



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+F  W  +    +  F  + + G          + RAF   +    KP + I+NS++  
Sbjct: 591 QIFPSWMLLRTLLLANFKCRALAG----------SERAFTLFKKHGYKPDMVIFNSMLSI 640

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +++   +++A   L  ++E  LSP   TY+ L+  Y +     + +  LK ++     PD
Sbjct: 641 FTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPD 700

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            ++YN +I+ F   GL++        M  + +     T    +  Y   GM  ++E
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIE 756



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 64/156 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G  +EA++ F  M+     P+   YN+++    K  + NE +  L
Sbjct: 385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +MK    SP   T++ ++   G   M   ++   + MK  G  PD  T+N LI  +   
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           G        Y  M     +   +T  A+L+A    G
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 540



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 2/182 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++ +     + ++A    + +    L P L  YNS++  Y + G+  +A   L  
Sbjct: 634 FNS--MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +++  L P   +Y+ +I+ + +  +  E    L  M   G  P   TYN  +  +   G+
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
              +E   + M          T   ++D Y   G   +   F  ++        +  +++
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQR 811

Query: 320 LA 321
           LA
Sbjct: 812 LA 813


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 9/352 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEME 166
           ++R L N     +  + FD +  + + R NE    +  +I  L   G +E A   F+   
Sbjct: 156 LLRELGNRGECWKAIRCFD-FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETAL 214

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-Y 225
                 ++  ++++I  Y K G F+EA+     MK   L P   TY+ +I A GK  + +
Sbjct: 215 SEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEF 274

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
             +    + M  +G  PD ITYN L+   +  GL +     +  M+ + +     T   +
Sbjct: 275 KRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTL 334

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS-RI 344
           LDA    G +D   +    +   +          +A+ Y K        +L +++    I
Sbjct: 335 LDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGI 394

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           G   + +   L  +A L        V +EM S+ V+ +V T N +L  Y K   F  +  
Sbjct: 395 GLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTR 454

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
           +  E+    V P+++T   L D    G     A+E+++     FK   +  D
Sbjct: 455 VFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFRE----FKQAGLKAD 502



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           ++   W   R L N    R I Q             + F    ++  +C+ G M+ A   
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQ-------------DVFTYNTLLDAVCKGGQMDLAYEI 350

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
             EM G  + P++  Y+++  GY+K G+  +AL   NEMK + +     +Y+ L+  Y K
Sbjct: 351 MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
              +++     K M   G   D +TYN L+  +   G    +   +K M   R+     T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              ++D Y    + ++  + ++     +  LK D+V
Sbjct: 471 YSTLIDVYSKGSLYEEAMEVFREF--KQAGLKADVV 504



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 109/269 (40%), Gaps = 30/269 (11%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A++  +EM    +K  +  YN+++ GY K GKFNE      EMK+  + P   TY
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI  Y K  +Y+E     +  K  G   D + Y+ LI      GL+         M  
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED----LVRKLAEVYIK-- 326
           + +     T  +I+DA   FG     E     +  S     E     L+  + E  I   
Sbjct: 532 EGIRPNVVTYNSIIDA---FGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWD 588

Query: 327 -NYMFSRLDDL-----GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
             ++F     L     G     R+G+ E+               R I SV ++M   +++
Sbjct: 589 DGHVFKFYQQLVSEKEGPAKKERLGKEEI---------------RSILSVFKKMHELEIK 633

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSEL 409
            NV T + IL A  + K  +   +LL EL
Sbjct: 634 PNVVTFSAILNACSRCKSIEDASMLLEEL 662



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 10/279 (3%)

Query: 120 RQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +++ ++F+ M +N ++  RI  +NS  ++ +    GL E A   F EM    +   +  Y
Sbjct: 275 KRVVEIFEEMLRNGVQPDRIT-YNS--LLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTY 331

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++    K G+ + A   + EM    + P   TY  +   Y K    ++       MK 
Sbjct: 332 NTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF 391

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G   D ++YN L+  +A  G  +      K M +  +     T  A+LD Y   G  ++
Sbjct: 392 LGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           + + +K +   R          L +VY K  ++    ++  +      + ++V    L++
Sbjct: 452 VTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELIN 511

Query: 358 HACLLSHRGIDSVV---REMESAKVRWNVTTANIILLAY 393
             C   +  +DS V    EM    +R NV T N I+ A+
Sbjct: 512 ALC--KNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF 548



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L    +  +  +V  ++K ++K R+  N      +I +  +  L EEA+  F+E +   
Sbjct: 439 LLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAG 498

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           LK  + +Y+ +I+   K G  + A+L L+EM +  + P   TY+ +I A+G+
Sbjct: 499 LKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 136/308 (44%), Gaps = 9/308 (2%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V D +K    S I  +E     ++  LC+ G +EEAV    EM+G  +   +  Y ++I
Sbjct: 385 EVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLI 444

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GY   GK  +A     EMKE  + P   TY+ L+  + +  +  E    L  +   G  
Sbjct: 445 AGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLK 504

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+  T+N +I+    AG +K  E    ++  K +   S    A++D Y       K  + 
Sbjct: 505 PNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYS----AMVDGYCKANFTRKAYEL 560

Query: 302 YKRLLNSRTPLKEDLVRK-LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
           + RL      +K+    K L+ + ++      L  L   LA  +   ++++  +L+   C
Sbjct: 561 FSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYG-KLIGAFC 619

Query: 361 LLSHRGIDSVVREMESAK-VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                    +V +M   + +  +V T  +++  Y ++   +  R + +++  R +KPD++
Sbjct: 620 RDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVI 679

Query: 420 TIGILYDA 427
           T  ++ D 
Sbjct: 680 TYTVVLDG 687



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 5/286 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N++     I  LC +G  EEAV  F+EME   + P+    ++ I G     + +     L
Sbjct: 226 NDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEAL 285

Query: 198 NEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             ++  N    +  Y  +I+ +  + K+ +  D+ + M+  +G +PD   Y  LI  +  
Sbjct: 286 RALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVN-EGIAPDGYIYGALIHAYCK 344

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG L +    +  M++  +      + +IL      GM  ++   +K   +S   L E L
Sbjct: 345 AGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVL 404

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREM 374
              + +   K        +L +++  R    ++V    L++  C L  + +D+  +  EM
Sbjct: 405 YNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYC-LQGKLVDAKNMFEEM 463

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   +  ++ T NI++  + +    K    LL  + T+ +KP+  T
Sbjct: 464 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSAT 509



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 9/302 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E G ++ AV  ++ ++   L P+   Y   I    + G F EA+    EM+E  ++P 
Sbjct: 202 LIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPN 261

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + T    I+    +K  D     L+ ++      D   Y  +I+ F     LK  E  + 
Sbjct: 262 AVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFI 321

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M+ + +        A++ AY   G L +    +  ++++       +V  + +   +  
Sbjct: 322 DMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMG 381

Query: 329 MFSR-LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
           M S  +D   +   S I   E+++ + + +   L        ++ EM+  ++  +V    
Sbjct: 382 MASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYT 441

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMWKR 443
            ++  Y         + +  E+  R ++PDIVT  IL      GF   G    ALE+   
Sbjct: 442 TLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVG----GFSRNGLKKEALELLDC 497

Query: 444 IG 445
           IG
Sbjct: 498 IG 499



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 15/175 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+    K+IG  C +G M+ A   F  +    + P +  Y  +I+GY ++    EA    
Sbjct: 607 NQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIF 666

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY--KMYDEIDMCL-----KM--------MKLDGCSP 242
           N+MKE  + P   TY  ++  + K   KM   +         KM        MK  G  P
Sbjct: 667 NDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKP 726

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           D + Y +LI        L+     Y  M+ + +     T  A+L +  + G +D+
Sbjct: 727 DVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDR 781



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 66/169 (39%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I+ F    +I   C E  ++EA   F +M    + P   IY ++IH Y K G   +A+  
Sbjct: 295 IDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVAL 354

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            N+M    +         ++Q   +  M  E+    K  +  G   D + YN+++     
Sbjct: 355 HNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCK 414

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            G ++        M  +RM L       ++  Y   G L   +  ++ +
Sbjct: 415 LGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEM 463



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 115/274 (41%), Gaps = 13/274 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+ +EA+ A  + +     P +   N +++   + GK + A+     +K + L+P   TY
Sbjct: 171 GMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTY 230

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
              I+A  +   ++E     + M+  G +P+ +T +  I+   C+   KR +  Y+++  
Sbjct: 231 GIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGL-CSH--KRSDLGYEALRA 287

Query: 273 KRMH---LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
            R     + +    A++  + +   L + E  +  ++N        +   L   Y K   
Sbjct: 288 LRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGN 347

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV----REMESAKVRWNVTT 385
             +   L +D+ S   +T  V    +L   C     G+ S V    +E   + +  +   
Sbjct: 348 LLQAVALHNDMVSNGIKTNCVIVSSILQCLC---EMGMASEVVDQFKEFRDSGIFLDEVL 404

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
            NI++ A  K+   +    LL+E+  R +  D+V
Sbjct: 405 YNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVV 438



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 39/187 (20%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI---------- 187
           N     +II  LC  G ++EA      +E       LE Y++++ GY K           
Sbjct: 506 NSATHNRIIEGLCMAGKVKEAEAFLNTLE----DKCLENYSAMVDGYCKANFTRKAYELF 561

Query: 188 -------------------------GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                                    G++++AL+ L  M  +++ P    Y  LI A+ + 
Sbjct: 562 SRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRD 621

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                  +   M+   G +PD ITY ++I  +     L+     +  M  + +     T 
Sbjct: 622 GDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITY 681

Query: 283 VAILDAY 289
             +LD +
Sbjct: 682 TVVLDGH 688


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 147/359 (40%), Gaps = 41/359 (11%)

Query: 108 AVIRFLKNSSRSRQIPQV-FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           AV+  L  S  +   PQ   D +++I   R+  N +    ++   C +G + +A+     
Sbjct: 172 AVLSALARSPSTS--PQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLST 229

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+GF L P    YN++++ + + G   EA   L  MK+  ++P   TY+ L+ AY +   
Sbjct: 230 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGW 289

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRMEG---------TYK 268
             +    ++ M  +G  PD  TYN+L      AG       L   ME          TY 
Sbjct: 290 IKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYN 349

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKM-EKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           ++       R S+     DA     +L++M EK  K  L +       +++ L +     
Sbjct: 350 TLADACFKCRCSS-----DA---LRLLEEMREKGVKATLVTHN----IVIKGLCKDGELE 397

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHA-CLLSHRGID-SVVREMESAKVRWNVTT 385
                L+ + DD     G    V     L HA C   +     +++ EM    ++ +  T
Sbjct: 398 GALGCLNKMADD-----GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFT 452

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            N +L    K K ++  + LL   P R   PD V+ G +  A    ++   AL +W  +
Sbjct: 453 LNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEM 511



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 133/316 (42%), Gaps = 10/316 (3%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           + ++ AF+ +    L P+   +N ++H +   G   +AL  L+ M+   LSP + TY+ L
Sbjct: 186 QASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTL 245

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + A+ +  M  E    L  MK DG +P   TYN L+  +A  G +K+     ++M     
Sbjct: 246 LNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGF 305

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRL 333
                T   +       G +D+  +    +    T L  D+V    LA+   K    S  
Sbjct: 306 EPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGT-LLPDVVTYNTLADACFKCRCSSDA 364

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLA 392
             L +++  +  +  LV    ++   C      G    + +M    +  +V T N ++ A
Sbjct: 365 LRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHA 424

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIG-ILYD--ARRIGFDGTGALEMWKRIGFLFK 449
           + K  +      L+ E+  R +K D  T+  +LY+    +   +  G L+   + GF+  
Sbjct: 425 HCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPD 484

Query: 450 TVEINTDPLVLAVYGK 465
            V   T   V+A Y K
Sbjct: 485 EVSYGT---VMAAYFK 497



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A+R + EM    L PS+  YN++I G S++G+  EA+  LNE+ E  L P   TY+ +
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNII 561

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I AY K    +        M  +   PD +T N L+      G L +    ++S + K  
Sbjct: 562 IHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGK 621

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFY 302
            +   T   ++      G +D    F+
Sbjct: 622 KVDVITYNTLIQTMCKDGDVDTALHFF 648



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 122/295 (41%), Gaps = 23/295 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++G +E A+    +M    L P +  YN++IH + K G   +A   ++EM    
Sbjct: 386 VIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRG 445

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI----QEFACAGLL 260
           L   + T + ++    K K Y+E    L+     G  PD ++Y  ++    +E+     L
Sbjct: 446 LKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPAL 505

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML----DKMEKFYKRLLNSRTPLKEDL 316
           +     +  M+ K++    ST   ++      G L    DK+ +  ++ L     + +D 
Sbjct: 506 R----LWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGL-----VPDDT 556

Query: 317 VRK-LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
               +   Y K           + +     + ++V C  L++  CL  +  +D  ++  E
Sbjct: 557 TYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCL--NGKLDKALKLFE 614

Query: 376 S---AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S      + +V T N ++    K  D        +++  R ++PD  T  ++  A
Sbjct: 615 SWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSA 669



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +++ F    ++  LC+E   EEA    Q        P    Y +++  Y K      AL 
Sbjct: 447 KLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALR 506

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             +EM E  L+P   TY+ LI+   +  ++ + ID   ++M+  G  PD  TYN++I  +
Sbjct: 507 LWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELME-KGLVPDDTTYNIIIHAY 565

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
              G L+     +  M+         T   +++     G LDK  K ++
Sbjct: 566 CKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFE 614



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 15/172 (8%)

Query: 124 QVFDMWKNIEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           ++F+ W  +EK + ++      +I  +C++G ++ A+  F +ME   L+P    YN ++ 
Sbjct: 611 KLFESW--VEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLS 668

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
             S+ G+  EA   L+++ E     QS +   L     K    DE +   K  K +  + 
Sbjct: 669 ALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLL-----KPSSVDEAESG-KDAKTEEETV 722

Query: 243 DHI------TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           ++        Y  L+     +G  K  +     M+ K M + SST + +++ 
Sbjct: 723 ENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEG 774


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 117 SRSRQIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R +QI  ++D+++   ++    + F    +I      G + EA++ F+E+E    KP +
Sbjct: 295 GRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDI 354

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YNS+I+   K G  +EA +   EM+E  L+P   TY  LI+ +GK    D+++M  ++
Sbjct: 355 ISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKT---DKVEMACRL 411

Query: 235 ---MKLDGCSPDHITYNLLI 251
              M  +GC P+ +TYN+L+
Sbjct: 412 FDEMLAEGCFPNIVTYNILL 431



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 24/280 (8%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +   R + EM+       +  +N ++   +K  K ++A     +MK+ +  P   TY  +
Sbjct: 59  DNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIM 118

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I+  G+    DE     + M   GCSP+ I YN +IQ  A + ++ +    +  M+ K  
Sbjct: 119 IRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNC 178

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                T   IL      G L K++K              +L RK     I  Y+   L+ 
Sbjct: 179 RPNEFTYSVILTLLAAEGQLHKLDKVV------------ELSRKYMNRSIYAYLVRTLNK 226

Query: 336 LGD---------DLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVT 384
           LG          ++ S   R +   CL +L   C        ID ++ ++    +  +  
Sbjct: 227 LGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAID-LLGKIHEKGINTDTI 285

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             N +  A  ++K   HL  L  ++      PDI T  IL
Sbjct: 286 MYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNIL 325



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 144/340 (42%), Gaps = 41/340 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  L ++  +++A + F++M+    +P    Y  +I    +IGK +E+L    E
Sbjct: 78  FAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEE 137

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M     SP    Y+ +IQA    +M D+  +    M    C P+  TY++++   A  G 
Sbjct: 138 MLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQ 197

Query: 260 LKRMEGTYKSMLTKRMHLRS--STMVAILD----------------AYMNFGMLDKMEKF 301
           L +++   +  L+++   RS  + +V  L+                +Y + G  D     
Sbjct: 198 LHKLDKVVE--LSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSM 255

Query: 302 YKRLLNS-RTPLKEDLVRKLAEVYIK------NYMFSRLDDLGD-----DLASRI---GR 346
            + L N+ +T    DL+ K+ E  I       N +F+ L  L       DL  ++   G 
Sbjct: 256 LESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGP 315

Query: 347 TELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
              ++   +L  +   + +  ++  +  E+E++  + ++ + N ++    K  D     +
Sbjct: 316 LPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHI 375

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              E+  + + PD+VT   L +     F  T  +EM  R+
Sbjct: 376 RFREMQEKGLNPDVVTYSTLIEC----FGKTDKVEMACRL 411



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  YN +I  + + GK  EA+    E++  +  P   +Y+ LI   GK    DE  + 
Sbjct: 317 PDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIR 376

Query: 232 LKMMKLDGCSPDHITYNLLIQ--------EFACAGLLKRM--EGTYKSMLTKRMHL---- 277
            + M+  G +PD +TY+ LI+        E AC  L   M  EG + +++T  + L    
Sbjct: 377 FREMQEKGLNPDVVTYSTLIECFGKTDKVEMACR-LFDEMLAEGCFPNIVTYNILLDCLE 435

Query: 278 RSSTMVAILDAY 289
           RS      +D Y
Sbjct: 436 RSGRTAEAVDLY 447


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC  G +EEAV    +M G    P+   YN+++  + + G+ + A   +
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 198 NEMK-EMNLSPQSDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
           + M+ E N  P   T++ ++          G  K++DE       M  +G +PD ++YN 
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE-------MVREGLAPDVVSYNT 121

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           L+  +   G L      +  M  + +     T  +++ A    G L++      ++    
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDD--LGDDLASRIGRTELVWCLR-LLSHACLLSHRG 366
             + E     L + + K      LDD  L  +   + G    V C   L++  C L    
Sbjct: 182 LRMNEVTFTALIDGFCKKGF---LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 367 ID-SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +   ++REME+ +V+ +V T + I+  Y K+ +      L  ++  + V PD +T
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+NE     +I   C++G +++A+ A +EM    ++PS+  YN++I+GY K+G+ + A  
Sbjct: 183 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 242

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEF 254
            + EM+   + P   TY  +I  Y K    D    +  KM+K  G  PD ITY+ LI+  
Sbjct: 243 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAITYSSLIRGL 301

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                L      +++ML   +     T   ++D +   G ++K    +  ++
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 353



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  +  FNS  ++  LC+ G ME A + F EM    L P +  YN+++ GY K+G  +E+
Sbjct: 78  KPNLVTFNS--MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 135

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L   +EM +  L P   T+  LI A  K    ++    +  M+  G   + +T+  LI  
Sbjct: 136 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 195

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           F   G L       + M  ++  ++ S +   A+++ Y   G +D   +  + +   R  
Sbjct: 196 FCKKGFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-- 251

Query: 312 LKEDLV 317
           +K D+V
Sbjct: 252 VKPDVV 257



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 18/262 (6%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P++  YN ++      G+  EA+  + +M+    +P + TY+ L+ A+ +    D  
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 229 DMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKRMHLRSSTMVA 284
           +  + +M+ +G   P+ +T+N ++     AG   RMEG  K    M+ + +     +   
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAG---RMEGARKVFDEMVREGLAPDVVSYNT 121

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLAS 342
           +L  Y   G L +    +  +  ++  L  D+V    L     K     +   L   +  
Sbjct: 122 LLSGYCKVGCLHESLAVFSEM--TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 179

Query: 343 RIGRTELVWCLRLLSHACLLSHRGI--DSV--VREMESAKVRWNVTTANIILLAYLKMKD 398
           R  R   V    L+   C    +G   D++  V EM    ++ +V   N ++  Y K+  
Sbjct: 180 RGLRMNEVTFTALIDGFC---KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 236

Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
               R L+ E+  + VKPD+VT
Sbjct: 237 MDLARELIREMEAKRVKPDVVT 258



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 15/179 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LCEE  + +A   F+ M    ++P    Y ++I G+ K G   +AL   +EM    
Sbjct: 297 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 356

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN---------------L 249
           + P   TY  LI    K     E    L  +  +   PD+I Y+                
Sbjct: 357 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVA 416

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           L++ F   GL+K  +  Y+SML +   L  S    ++  +   G + K   F+K++L S
Sbjct: 417 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G M+ A    +EME   +KP +  Y++II GY K+G  + A     +M +  
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286

Query: 205 LSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P + TY  LI+   + K + D  ++   M++L G  PD  TY  LI      G +++ 
Sbjct: 287 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKA 345

Query: 264 EGTYKSMLTK 273
              +  M+ K
Sbjct: 346 LSLHDEMIRK 355



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 139 EFNSQKIIGML---CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           EF S  ++ +L   C +GLM+EA + +Q M     K    +Y+ +IHG+ + G   +AL 
Sbjct: 410 EFKS--VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 467

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           F  +M     SP S +   L++   +  M  E D
Sbjct: 468 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEAD 501


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 108  AVIRFLKNSSR-SRQIPQVFDMWKNIEKSRIN-EFNSQKI-IGMLCEEGLMEEAVRAFQE 164
            A+   L N  R +    +V ++++N+    IN +  S  + IG LC  G + +++  F++
Sbjct: 917  AIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQ 976

Query: 165  MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
            +    L+P L  YN +IHG  + G+  EA+   N+M++  ++P   TY+ LI   GK   
Sbjct: 977  LTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGK 1036

Query: 225  YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
              E     + +  +G  P+  TYN LI  ++ +G       +Y  M+       SST
Sbjct: 1037 AAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSST 1093



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 16/185 (8%)

Query: 92  LQILQHDGDWT--KDHFWAV------------IRFLKNSSRSRQIPQVFDMWKNIEKSRI 137
           +QIL   G  +  KD FW +            I  L     +     V ++W  ++    
Sbjct: 293 IQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGY 352

Query: 138 NE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N+       ++  LC+ G ++EA   F +M+   ++P    YNS+I G+ K  + N AL 
Sbjct: 353 NDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALE 412

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N M     +P   TY   I  YGK     +     ++MK  G  PD +  N ++   A
Sbjct: 413 LFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLA 472

Query: 256 CAGLL 260
            +G L
Sbjct: 473 KSGRL 477



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           AV+  L  S R     +VF   K+I     N      +I    +    +EA++ F EM  
Sbjct: 466 AVLYSLAKSGRLGMAKRVFHELKSIGVCPDN-ITYTMMIKCCSKASNADEAMKVFSEMIE 524

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P +   NS+I    K G+ NEA    +E+KEMNL P   TY+ L+   G+     E
Sbjct: 525 TRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKE 584

Query: 228 IDMCLKMMKLDGCSPDHITYNLLI 251
           +   L+ M  +   P+ ITYN ++
Sbjct: 585 VMHLLEEMNSNSYPPNLITYNTVL 608



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 21/294 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G   EA + F E++   L P+   YN+++ G  + GK  E +  L EM   +
Sbjct: 537 LIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNS 596

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK 261
             P   TY+ ++    K     E++  L M   M + GC PD  +YN  +      GL+K
Sbjct: 597 YPPNLITYNTVLDCLCK---NGEVNYALGMLYNMTMKGCMPDLSSYNTALH-----GLVK 648

Query: 262 --RMEGTYK--SMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDL 316
             R+   ++    + K +    +T+  IL +++  G++++ +    + +L   +      
Sbjct: 649 EDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSS 708

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDS--VVRE 373
              L E  +K     +  +  +++A SRI   +  +   L+ H C  S + +++  +V++
Sbjct: 709 FHSLMEGILKRAGMEKSIEFAENIALSRILLDDF-FLSPLIRHLC-KSKKALEAHELVKK 766

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ES  V     + N ++   +          L SE+      PD  T  ++ DA
Sbjct: 767 FESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDA 820



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G  E+    FQ M    + P ++ Y  +I      G+ N++L +  ++ E+ L P   TY
Sbjct: 930  GNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITY 989

Query: 213  DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
            + LI   G+    +E       M+  G +P+  TYN LI      G        Y+ +L 
Sbjct: 990  NLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLK 1049

Query: 273  KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                    T  A++  Y   G  D     Y +++    P
Sbjct: 1050 NGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCP 1088



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 2/182 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  + R L      R  P    M K      +N +    +I  L + G   EA+  ++ M
Sbjct: 150 FLTIFRSLGMEGGLRSAPVALPMMKE-AGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVM 208

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               + PS+  Y+ ++  + K       +  L EM++  + P   +Y   I+  G+   +
Sbjct: 209 ATDGIVPSVRTYSVLMLAFGKR-DVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRF 267

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           +E    L+ M+ +GC PD +T  +LIQ    AG +   +  +  M          T + +
Sbjct: 268 EEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITL 327

Query: 286 LD 287
           LD
Sbjct: 328 LD 329



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%)

Query: 94  ILQHDGDWTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLC 150
           ILQ      +  F +++   LK +   + I    +  +NI  SRI  ++F    +I  LC
Sbjct: 697 ILQPGSKADRSSFHSLMEGILKRAGMEKSI----EFAENIALSRILLDDFFLSPLIRHLC 752

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +     EA    ++ E   +      YN++I G       + A    +EMK +   P   
Sbjct: 753 KSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEF 812

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ ++ A GK    +++    K M   G    ++TYN +I     + +L      Y  +
Sbjct: 813 TYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKL 872

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           +++       T   +LD  +  G ++  E  +  +L+
Sbjct: 873 MSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLD 909



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 85/181 (46%), Gaps = 4/181 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    I+  + +   +E+ ++  +EM     + +   YN+II G  K     EA+   
Sbjct: 810 DEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLY 869

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++     SP   TY  L+    K  K+ D  D+  +M+   GC P+   YN+L+  +  
Sbjct: 870 YKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDY-GCKPNRAIYNILLNGYRL 928

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG  +++   +++M+ + ++    +   ++ A    G L+    ++++L  +   L+ DL
Sbjct: 929 AGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQL--TELGLEPDL 986

Query: 317 V 317
           +
Sbjct: 987 I 987



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 36/184 (19%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           IR L  + R  +  ++    ++ E  + +   +  +I +LC+ G + +A   F +M+   
Sbjct: 258 IRVLGQAGRFEEAYKILQKMED-EGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASD 316

Query: 170 LKPS--------------------LEIYNS---------------IIHGYSKIGKFNEAL 194
            KP                     +EI+N+               ++    ++G+ +EA 
Sbjct: 317 QKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEAS 376

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              ++MK+  + PQ  +Y+ LI  + K    +        M + G +P+  TY L I  +
Sbjct: 377 DVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYY 436

Query: 255 ACAG 258
             +G
Sbjct: 437 GKSG 440



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           NI     N +     I    + G   +A++ ++ M+   + P +   N++++  +K G+ 
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRL 477

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             A    +E+K + + P + TY  +I+   K    DE       M    C PD +  N L
Sbjct: 478 GMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSL 537

Query: 251 IQEFACAG 258
           I     AG
Sbjct: 538 IDTLYKAG 545


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+    ++A+  F +ME   + P++  YN+IIHG  K G+ +EA  F  +M +  
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY   I    K +  DE +  LK M   G  P+ + YN LI  +   G +    
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEAL 381

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                ML+K +   S T+ +++  +     + + E   + ++    P+ +
Sbjct: 382 KIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQ 431



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N+     ++  LC+ G   EAV  +  + G    P++   N++IHG  K G   E L 
Sbjct: 463 RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLK 522

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L +M E  L     TY+ LI    K  K+ +  ++  +M+K  G  PD  T+NLL+   
Sbjct: 523 LLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVK-KGIQPDIYTFNLLLHGL 581

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
             A  +      +             T   ++D Y     +++ E     L++ +  L  
Sbjct: 582 CNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNS 641

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSV 370
            +   L   Y  N   +    L DD+ S   R  L+ C    S    L + G+      +
Sbjct: 642 VVYNSLIRAYCINGNMNAAFRLRDDMKS---RGVLLSCATYSSLMHGLCNIGLVDDAKHL 698

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + EM    +  NV     I+  Y K+     + ++L E+ + ++ P+  T  I+ D 
Sbjct: 699 LDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDG 755



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 33/304 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+ G ++EA R  ++M    + PSL  Y+  I+G  K+ K +EA   L
Sbjct: 290 NVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVL 349

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM E+   P    Y+ LI  Y K     E       M   G SP+ +T N LIQ F  +
Sbjct: 350 KEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKS 409

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILD-AYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
             + + E   + M+ + + +   +   +++   + F  +  +    + LL +  P  + L
Sbjct: 410 DQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRP-NDGL 468

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV----- 371
           +  L     K              A + G    +WC RLL    + +    ++++     
Sbjct: 469 LTTLVSGLCK--------------AGKQGEAVELWC-RLLGKGFVPNIVTSNALIHGLCK 513

Query: 372 -----------REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                      R+M    + ++  T N ++    K    K    L  E+  + ++PDI T
Sbjct: 514 AGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYT 573

Query: 421 IGIL 424
             +L
Sbjct: 574 FNLL 577



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  GL+++A     EM    L P++  Y +II GYSK+G+ N+  + L EM   N+ P 
Sbjct: 686 LCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPN 745

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I  + K     E    L  M   G  PD +TYN         G ++       
Sbjct: 746 KFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCD 805

Query: 269 SMLTKRMHLRSSTMVAILDA 288
            M +  + L   T   ++D 
Sbjct: 806 EMSSGAVCLDEITYTTLIDG 825



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 75/182 (41%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +K  +N      +I   C  G M  A R   +M+   +  S   Y+S++HG   IG  ++
Sbjct: 635 KKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDD 694

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A   L+EM++  L P    Y  +I  Y K    +++++ L+ M      P+  TY ++I 
Sbjct: 695 AKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMID 754

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            F   G  K        M  K +   + T  A  +     G +++  K    + +    L
Sbjct: 755 GFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCL 814

Query: 313 KE 314
            E
Sbjct: 815 DE 816



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 45/107 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG   + G M +     QEM    + P+   Y  +I G+ K+GK  EA   LNEM E  
Sbjct: 717 IIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG 776

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + P + TY+       K    +E       M       D ITY  LI
Sbjct: 777 ILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 6/194 (3%)

Query: 119 SRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           + +I +   +W   +K+    N +    +I   C+   +EE      E+    L+ +  +
Sbjct: 584 ADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVV 643

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YNS+I  Y   G  N A    ++MK   +     TY  L+       + D+    L  M+
Sbjct: 644 YNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMR 703

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            +G  P+ + Y  +I  ++  G + ++    + M +  +H    T   ++D +   G   
Sbjct: 704 KEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTK 763

Query: 297 KMEKFYKRLLNSRT 310
           +  K    LLN  T
Sbjct: 764 EAAK----LLNEMT 773



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 34/81 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F    +I   C+ G  +EA +   EM    + P    YN+  +G  K GK  EA    
Sbjct: 745 NKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVC 804

Query: 198 NEMKEMNLSPQSDTYDGLIQA 218
           +EM    +     TY  LI  
Sbjct: 805 DEMSSGAVCLDEITYTTLIDG 825


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           +I  + D  +N E  + +EF    +I     EGL+ EA   F E++    +P    YN++
Sbjct: 286 KILDLLDEMRN-EGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNAL 344

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           +  + K G ++EAL  L EM++ N +  S TY+ L+ AY +   Y+E    +  M   G 
Sbjct: 345 LQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGV 404

Query: 241 SPDHITYNLLIQEFACAG 258
            P+ +TY  +I  +  AG
Sbjct: 405 MPNAVTYTTVINAYGRAG 422



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 21/288 (7%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            +++      G  EE       M    + P+   Y ++I+ Y + GK  +AL   N+MK+
Sbjct: 377 NELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKK 436

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY+ ++   GK    +E+   L  M+++GC P+ IT+N L+      G  K 
Sbjct: 437 SGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKF 496

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLA 321
           +   ++ M          T   ++ AY   G      K Y  ++ +  TP         A
Sbjct: 497 VNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTP--------CA 548

Query: 322 EVYIKNYMFSRLDDLGDDLASR----------IGRTELVWCLRLLSHACLLSHRGIDSVV 371
             Y  N + + L   GD  A+               E  + L L  +A   + RG++ + 
Sbjct: 549 TTY--NALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIG 606

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           +++   ++  +      ++LA  K +  + +     EL     KPD+V
Sbjct: 607 KDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMV 654



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 148/337 (43%), Gaps = 20/337 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           +++  L   SRS ++ ++  DM   I     N      ++ M  ++G  +     F+EM+
Sbjct: 448 SILALLGKKSRSEEMIKILSDM--RINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMK 505

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P  + +N++I  Y + G   +A    +EM +   +P + TY+ L+ A  +   + 
Sbjct: 506 NCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWK 565

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +  L  M+  G  P+  +++L++  +A  G ++ +E   K +   ++      +  ++
Sbjct: 566 AAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLI 625

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRI 344
            A      +  ME+ ++ L+  +   K D+V    +  ++ KN M+ R   + D +    
Sbjct: 626 LANFKCRAVRGMERAFEELM--KNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESG 683

Query: 345 GRTELVWCLRLLS-----HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            + +LV    L++       C  +   +  +++  ES     ++ + N I+  + +    
Sbjct: 684 LQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESP----DLVSYNTIIKGFCRQGLM 739

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           +    ++SE+ TR + P I T    Y+    G+ G G
Sbjct: 740 QEAIRVMSEMTTRGICPCIFT----YNTFVSGYAGRG 772



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 37/278 (13%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------------------- 189
           G  ++A+  F+ M+   L PSL  YN ++  Y K+G+                       
Sbjct: 246 GKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFT 305

Query: 190 -------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                         NEA  F  E+K     P + TY+ L+Q +GK  +Y E    LK M+
Sbjct: 306 CSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEME 365

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C+ D +TYN L+  +  AG  +       +M  K +   + T   +++AY   G   
Sbjct: 366 DNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEV 425

Query: 297 KMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           K  + + ++  S   P        LA +  K+     +  L D   +      + W   L
Sbjct: 426 KALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLL 485

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
                   H+ ++ V REM++        T N ++ AY
Sbjct: 486 AMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAY 523



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C +GLM+EA+R   EM    + P +  YN+ + GY+  G F E    ++ M + N
Sbjct: 729 IIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKN 788

Query: 205 LSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSPDHITYNL 249
             P   TY  ++  Y K + Y D +D    +  +D    +H T  L
Sbjct: 789 CKPNELTYKIIVDGYCKARKYQDAMDFIFGIKNIDDSFDNHSTQRL 834



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 10/203 (4%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+F  W  +    +  F  + + GM           RAF+E+     KP + I+NS++  
Sbjct: 613 QIFPSWVLLRTLILANFKCRAVRGM----------ERAFEELMKNGYKPDMVIFNSMLSI 662

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           ++K   +  A   L+ ++E  L P   TY+ L+  Y +     + +  LK +   G SPD
Sbjct: 663 FAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPD 722

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            ++YN +I+ F   GL++        M T+ +     T    +  Y   GM  ++++   
Sbjct: 723 LVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVIS 782

Query: 304 RLLNSRTPLKEDLVRKLAEVYIK 326
            ++       E   + + + Y K
Sbjct: 783 YMIQKNCKPNELTYKIIVDGYCK 805



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P L  YN+II G+ + G   EA+  ++EM    + P   TY+  +  Y    M+ E+D  
Sbjct: 721 PDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEV 780

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACA 257
           +  M    C P+ +TY +++  +  A
Sbjct: 781 ISYMIQKNCKPNELTYKIIVDGYCKA 806



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 105/245 (42%), Gaps = 4/245 (1%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKL 237
           +I+H YS+ GK+ +A+     MK+  LSP   TY+ ++  YGK  + +D+I   L  M+ 
Sbjct: 237 TILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRN 296

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           +G   D  T + +I      GL+   +  +  + +      + T  A+L  +   G+  +
Sbjct: 297 EGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSE 356

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                K + ++   L      +L   Y++   +     + D + +R G          + 
Sbjct: 357 ALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTM-TRKGVMPNAVTYTTVI 415

Query: 358 HACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
           +A   + + + +  +  +M+ +    NV T N IL    K    + +  +LS++      
Sbjct: 416 NAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCP 475

Query: 416 PDIVT 420
           P+ +T
Sbjct: 476 PNRIT 480


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           CE G M+E      EME  A+ P+   Y  +I G  +  K +E+L  L  M    L P S
Sbjct: 597 CEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDS 656

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +IQ + K K   +      MM L  C P  +TY +LI      G LK ++    S
Sbjct: 657 VTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +  + + L+  T + I+ A+   G + K   ++ ++L
Sbjct: 717 IEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQML 753



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 129 WKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +K IE+     +  FN+  +I   C  G + EA +  + +    L PS+  Y ++++ Y 
Sbjct: 540 YKMIERGITPSVVTFNT--LINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYC 597

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDH 244
           ++G   E   FL+EM+   + P   TY  LI+   +  KM++ + + L+ M   G  PD 
Sbjct: 598 EVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQL-LEYMYAKGLLPDS 656

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN +IQ F     + +    Y  ML         T   +++A   FG L  +++    
Sbjct: 657 VTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 305 LLNSRTPLKE 314
           + +    LK+
Sbjct: 717 IEDRNITLKK 726



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 150/369 (40%), Gaps = 26/369 (7%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GLM  A +  Q+M    L P L  Y ++I G+ ++G   EAL    E            Y
Sbjct: 355 GLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFY 414

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+    K    +E       M+     PD I Y++LI      G ++R    Y+ M  
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRL 474

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           KR         A+L      G + +   ++     +R  L ED+V  L  + I  Y+  R
Sbjct: 475 KRKFPHHFAQRAVLLGLFKNGNISEARNYFDTW--TRMDLMEDVV--LYNIMIDGYV--R 528

Query: 333 LDDLGD------DLASRIGRTELVWCLRLLSHAC----LLSHRGIDSVVREMESAKVRWN 382
           LD + +       +  R     +V    L++  C    L+  R +  V+R      +  +
Sbjct: 529 LDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR---LKGLVPS 585

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA---RRIGFDGTGALE 439
           V T   ++ AY ++ + + +   L E+    V P  VT  +L      +    +    LE
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID-LV 498
                G L  +V  NT   ++  + KG  +    ++Y+ +  ++ +  + TY+ LI+ L 
Sbjct: 646 YMYAKGLLPDSVTYNT---IIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALC 702

Query: 499 IKHNGKNLD 507
           I  + K++D
Sbjct: 703 IFGDLKDVD 711



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 28/228 (12%)

Query: 26  KNKLTHDRVFFAKTLIRKPISCCCLSSAPSLD--YHSTKHTTLLVESYHEHQALNALIQR 83
           ++++ HD +F    +I K       +S P+ +   H+ +HT ++ + Y+E +   A    
Sbjct: 182 RHEMIHDALF----VIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGA---- 233

Query: 84  LNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
              +  C   IL H G   +      I FL +S++             +    I   N+ 
Sbjct: 234 --PQSECTTSILIH-GLCEQSKLEDAISFLHDSNK-------------VVGPSIVSINT- 276

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            I+   C+ GL++ A   F  M    L      YN ++HG    G  +EAL F ++M++ 
Sbjct: 277 -IMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKH 335

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            + P   TY+ L + +    +       ++ M L G +PD +TY  LI
Sbjct: 336 GVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLI 383



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           FD W  ++        +  I G +  +G+  EA++ + +M    + PS+  +N++I+G+ 
Sbjct: 504 FDTWTRMDLMEDVVLYNIMIDGYVRLDGI-AEAMQLYYKMIERGITPSVVTFNTLINGFC 562

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           + G   EA   L  ++   L P   TY  L+ AY +     E+   L  M+ +   P H+
Sbjct: 563 RRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHV 622

Query: 246 TYNLLIQ 252
           TY +LI+
Sbjct: 623 TYTVLIK 629



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 1/171 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  M E+++  + M    L P    YN+II  + K  +  +AL   N M   N
Sbjct: 627 LIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN 686

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI A   +    ++D  +  ++    +   +TY  +I+     G + +  
Sbjct: 687 CDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKAL 746

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKE 314
           G +  ML K   +      A+++     G++ + + F+  +L+   TP  E
Sbjct: 747 GYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPE 797



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 3/190 (1%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R    ++D++  I+ S    +E  +  +I  LCE+  +E+A+ +F       + PS+   
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAI-SFLHDSNKVVGPSIVSI 274

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+I+  + K+G  + A  F   M +  L   S +Y+ L+         DE       M+ 
Sbjct: 275 NTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEK 334

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  PD +TYN L + F   GL+       + ML + ++    T   ++  +   G +++
Sbjct: 335 HGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEE 394

Query: 298 MEKFYKRLLN 307
             K  +  L+
Sbjct: 395 ALKLRQETLS 404



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 36/212 (16%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG------- 188
           ++N      ++  LC+ G +EEA+  F EME   L+P   +Y+ +IHG  K G       
Sbjct: 408 KLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQ 467

Query: 189 -------------KFNEALLFLNEMKEMNLSPQSDTYD-----GLIQAYGKYKM----YD 226
                         F +  + L   K  N+S   + +D      L++    Y +    Y 
Sbjct: 468 LYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYV 527

Query: 227 EIDMCLKMMKL------DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
            +D   + M+L       G +P  +T+N LI  F   G L       + +  K +     
Sbjct: 528 RLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVV 587

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
           T   +++AY   G + +M  F   +  N+  P
Sbjct: 588 TYTTLMNAYCEVGNMQEMFHFLHEMEANAVVP 619


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 130/325 (40%), Gaps = 44/325 (13%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             I+  LC E  M+E      +M G  L+P++  Y +I+  + K G+   A   L  M  
Sbjct: 228 NAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVI 287

Query: 203 MNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              +P   T+  L++  +   +++D +DM  + M  +G +P  ++YN+LI+     G LK
Sbjct: 288 TGCTPNVVTFTALVRGLFDDGRVHDALDM-WRWMVAEGWAPSTVSYNILIRGLCSVGDLK 346

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
                  SM          T   ++D +   G L      +  +  SR+  K ++V    
Sbjct: 347 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM--SRSGCKPNVVVYTN 404

Query: 320 LAEVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSH 358
           + +V+ K  MF++   L D +                       R+GR   V+   +  H
Sbjct: 405 MVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVF-HEMRRH 463

Query: 359 ACLLSHRGIDSV----------------VREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            C+ + R  + +                V EM+S  +  ++ T N ++    + +  +  
Sbjct: 464 GCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREA 523

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
            V + ++  + ++P+  T   +  A
Sbjct: 524 MVFVGKMIVQGIQPNAFTFSAIIHA 548



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F A++R L +  R   +    DMW+ +  E    +  +   +I  LC  G ++ A     
Sbjct: 297 FTALVRGLFDDGR---VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILN 353

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME     P++  Y+++I G+SK G    A+   N+M      P    Y  ++  + K  
Sbjct: 354 SMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 413

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           M+++    +  M L+ C P+ +T+N LI+       + R  G +  M
Sbjct: 414 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEM 460



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N      +I  LC+   +  A+  F EM      P+   YN +IHG  + G   
Sbjct: 427 LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCG 486

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL  + EM+   +     TY+ ++    + +M  E  + +  M + G  P+  T++ +I
Sbjct: 487 DALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAII 546

Query: 252 QEF 254
             +
Sbjct: 547 HAY 549



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 6/272 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C E ++   V  +  M    + P++  YN ++    +  +   A   L+EM      P  
Sbjct: 135 CGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDD 194

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  ++    K    DE    L  M      P   +YN ++        ++ +      
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVSD 249

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNY 328
           M+ + +     T   I+DA+   G L        R+ +   TP        +  ++    
Sbjct: 250 MVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGR 309

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
           +   LD     +A     + + + + +     +   +G  S++  ME      NV T + 
Sbjct: 310 VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 369

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           ++  + K  D      + +++     KP++V 
Sbjct: 370 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVV 401



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+  +  EA+    +M    ++P+   +++IIH Y K G+   A   L  M  +N
Sbjct: 510 VVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVN 569

Query: 205 LSPQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                  Y  L+ +   + K+ D +   LKM+  +G  P+ +T+N+L++
Sbjct: 570 CHRNILVYTILMAELCNQDKLVDAMTYLLKML-YEGIYPNTVTWNVLVR 617


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 22/248 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+ESY      N   A+ +R+      P  I           +  +++      + ++
Sbjct: 185 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAI----------TYQIILKTFVEGDKFKE 234

Query: 122 IPQVFDMWKNIEKSRINEFNSQKI----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
             +VF+   + +KS +     QK+    I M  + G  E+A + F  M G  +  S   Y
Sbjct: 235 AEEVFETLLDEKKSPLKP--DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTY 292

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   +    + E     ++M+  ++ P   +Y  LI+AYG+ +  +E     + M  
Sbjct: 293 NSLMSFETS---YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 349

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P H  YN+L+  FA +G++++ +  +KSM   R+     +   +L AY+N   ++ 
Sbjct: 350 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 409

Query: 298 MEKFYKRL 305
            EKF+KR+
Sbjct: 410 AEKFFKRI 417



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L+ + +M  +P   +Y  L+++YG+    +  +   + M+  G
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYM--NFGMLD 296
             P  ITY ++++ F      K  E  ++++L  K+  L+    +  +  YM    G  +
Sbjct: 212 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 271

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K  K +  ++    P        L          S++ D       ++ R+++     ++
Sbjct: 272 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD-------QMQRSDI--QPDVV 322

Query: 357 SHACLLSHRGID-------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           S+A L+   G         SV  EM  A VR      NI+L A+      +  + +   +
Sbjct: 323 SYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 382

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKG 466
               + PD+ +   +  A     D  GA + +KRI   GF    V   T   ++  Y K 
Sbjct: 383 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT---LIKGYAKA 439

Query: 467 HFLRYCEEVYSSL 479
           + +    EVY  +
Sbjct: 440 NDVEKMMEVYEKM 452



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  ++  G   +A      M+   + P   +Y  +
Sbjct: 338 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 397

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +K+DG  P+ +TY  LI+ +A A  +++M   Y+ M    +
Sbjct: 398 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 457

Query: 276 HLRSSTMVAILDAY---MNFG 293
               + +  I+DA     NFG
Sbjct: 458 KANQTILTTIMDASGRCKNFG 478


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 22/248 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+ESY      N   A+ +R+      P  I           +  +++      + ++
Sbjct: 178 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAI----------TYQIILKTFVEGDKFKE 227

Query: 122 IPQVFDMWKNIEKSRINEFNSQKI----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
             +VF+   + +KS +     QK+    I M  + G  E+A + F  M G  +  S   Y
Sbjct: 228 AEEVFETLLDEKKSPLKP--DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTY 285

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   +    + E     ++M+  ++ P   +Y  LI+AYG+ +  +E     + M  
Sbjct: 286 NSLMSFETS---YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P H  YN+L+  FA +G++++ +  +KSM   R+     +   +L AY+N   ++ 
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402

Query: 298 MEKFYKRL 305
            EKF+KR+
Sbjct: 403 AEKFFKRI 410



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L+ + +M  +P   +Y  L+++YG+    +  +   + M+  G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYM--NFGMLD 296
             P  ITY ++++ F      K  E  ++++L  K+  L+    +  +  YM    G  +
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K  K +  ++    P        L          S++ D       ++ R+++     ++
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD-------QMQRSDI--QPDVV 315

Query: 357 SHACLLSHRGID-------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           S+A L+   G         SV  EM  A VR      NI+L A+      +  + +   +
Sbjct: 316 SYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 375

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKG 466
               + PD+ +   +  A     D  GA + +KRI   GF    V   T   ++  Y K 
Sbjct: 376 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT---LIKGYAKA 432

Query: 467 HFLRYCEEVYSSL 479
           + +    EVY  +
Sbjct: 433 NDVEKMMEVYEKM 445



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  ++  G   +A      M+   + P   +Y  +
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 390

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +K+DG  P+ +TY  LI+ +A A  +++M   Y+ M    +
Sbjct: 391 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 450

Query: 276 HLRSSTMVAILDAY---MNFG 293
               + +  I+DA     NFG
Sbjct: 451 KANQTILTTIMDASGRCKNFG 471


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 104/267 (38%), Gaps = 41/267 (15%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F +++  L    R+     +FD  +       + +    +I   C+  +++EA R F++M
Sbjct: 176 FNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDM 235

Query: 166 EGFALKPSLEIYNSIIHGYSKIGK------------------------------------ 189
           E +   P +  YN+II G  + GK                                    
Sbjct: 236 ELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQ 295

Query: 190 -FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL--KMMKLDGCSPDHIT 246
             +EA+L  ++M    L P + TY+ LI+   +   YDEI   L          +PD  T
Sbjct: 296 EIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACT 355

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +N+LI+    AG L      ++ ML  ++H  S++   ++         D+ E  +  L 
Sbjct: 356 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELF 415

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRL 333
                L +D  + LA  Y  N MF  L
Sbjct: 416 EKEVLLGKDECKPLAAAY--NPMFEYL 440



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  +I      GL +E+V+ FQ M+   + PS+  +NS++    K G+   A    +E
Sbjct: 141 FNS--LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198

Query: 200 MKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M+    ++P S T++ LI  + K  M DE     K M+L  C+PD +TYN +I     AG
Sbjct: 199 MRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAG 258

Query: 259 LLKRMEGTYKSMLTK 273
            +K        ML K
Sbjct: 259 KVKIAHNVLSGMLKK 273


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 3/291 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   II    +EG +++A   F EM G    P +  Y+S+I G  K    N+A   L
Sbjct: 202 NVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAIL 261

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M +  + P + TY+ +I+ Y      +E    LK M   G  PD +TY LLIQ +   
Sbjct: 262 QHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKI 321

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G        + SM+ K     S+    +L  Y   G L  +      ++    P +    
Sbjct: 322 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 381

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREME 375
             L   Y K+    +      ++     R ++V    ++   C +  R  D+V    +M 
Sbjct: 382 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIG-RVEDAVYHFNQMV 440

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           S  +  N+ +   ++     + ++K +  L  E+  R + PD + +  + D
Sbjct: 441 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMD 491



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 147/334 (44%), Gaps = 29/334 (8%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +  + K+ +  + +    +M +N  +  +  +++  +I +LC+ G +E+AV  F +M   
Sbjct: 385 ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYST--VIHILCKIGRVEDAVYHFNQMVSE 442

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKM 224
            L P++  + S+IHG   IG++ +      EM    + P +       D L +     + 
Sbjct: 443 GLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEA 502

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            D  DM + +    G  P+ ++YN LI  +   G +      +  M++  +   S T  A
Sbjct: 503 QDFFDMVIHI----GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           +L+ Y   G ++     Y+ +       ++D+  K   +   N +   L   G  +A+R 
Sbjct: 559 LLNGYFKNGRVEDALALYREMF------RKDV--KFCAI-TSNIILHGLFQAGRIVAARE 609

Query: 345 GRTELV---WCLRLLSHACLLS----HRGIDSVVR---EMESAKVRWNVTTANIILLAYL 394
              ++V     LR+ ++  +L     +  +D  +R   ++ S +   +V T NI++ A L
Sbjct: 610 LYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALL 669

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
           K+      + L S +  R   P ++T  ++  +R
Sbjct: 670 KVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSR 703



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 15/295 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+      ++I  LC+    ++A+   F+ M      P +  YN++I G     K  EAL
Sbjct: 126 RVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEAL 185

Query: 195 LFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             L  M      N SP   +Y  +I  + K    D+       M   G  PD +TY+ LI
Sbjct: 186 ELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLI 245

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                A  + + E   + M  K +   + T   ++  Y + G L++  +  K++  S + 
Sbjct: 246 DGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM--SGSG 303

Query: 312 LKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           L+ D+V    L + Y K    +    + D +  R G+        +L H        ID 
Sbjct: 304 LQPDVVTYILLIQYYCKIGRCAEARSVFDSMV-RKGQKPNSTIYHILLHGYATKGALID- 361

Query: 370 VVREMESAKVRWNVT----TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            VR++    +R  +       NI++ AY K           +E+    ++PD+V+
Sbjct: 362 -VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVS 415



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           RI  +N+  ++G LCE   ++EA+R F+++     +  +  +N +I+   K+G+ +EA  
Sbjct: 622 RIETYNT--VLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKS 679

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + M      P   TY  +I++  +  + +E D     M+ +GC+ D    N++I+   
Sbjct: 680 LFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLL 739

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             G ++R  GTY + + ++     ++  A+L
Sbjct: 740 EKGDVRR-AGTYLTKIDEKNFSVEASTAALL 769



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N +I  Y+K G  ++A+    EM++  L P   +Y  +I    K    ++       M 
Sbjct: 381 FNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMV 440

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            +G SP+ I++  LI      G  K++E     M+ + +H  +  M  I+D     G + 
Sbjct: 441 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 500

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF-SRLDDLGD--DLASRIGRTELVWCL 353
           + + F+  +++    +K ++V       I  Y F  ++D+     D    IG     W  
Sbjct: 501 EAQDFFDMVIH--IGVKPNVVSY--NTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556

Query: 354 RLLSHACLLSHRGIDSVV--REMESAKVRWNVTTANIIL 390
             L +    + R  D++   REM    V++   T+NIIL
Sbjct: 557 NALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIIL 595



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%)

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            S  I+  L + G +  A   + +M     +  +E YN+++ G  +    +EAL    ++
Sbjct: 590 TSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDL 649

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           +         T++ +I A  K    DE       M L G  P  ITY+L+I+     GLL
Sbjct: 650 RSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLL 709

Query: 261 KRMEGTYKSM 270
           +  +  + SM
Sbjct: 710 EESDDLFLSM 719


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 93/194 (47%), Gaps = 5/194 (2%)

Query: 118 RSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           ++ ++   ++++K + ++  ++  +   +   LC+   ++ A+  F EME  A+ PSL  
Sbjct: 119 KNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLT 178

Query: 177 YNSIIHGYSKIGKFNEALLFLNEM----KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           YN +++GY + G+  +A+  L EM    K  ++ P   +Y+ +I  + K +        L
Sbjct: 179 YNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVL 238

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M   GCSP+ +T+N L+      G L      ++ M+ +     + T   ++  +   
Sbjct: 239 RRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARA 298

Query: 293 GMLDKMEKFYKRLL 306
             +DK   ++  +L
Sbjct: 299 LRIDKANDYFVDML 312



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 66/171 (38%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           ++   +I   C+   +  A    + M      P++  +N+++ G    GK +EA      
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E N  P + TY  LI  + +    D+ +     M   G  P+  TY  LI     A  
Sbjct: 276 MVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANK 335

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           ++      K M +        T   ++ A    G +++  K +   + SRT
Sbjct: 336 VEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRT 386



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++RQ+P    + + + KS     +  FN+  ++  LC  G ++EA   F+ M     +P+
Sbjct: 227 KARQLPTARYVLRRMIKSGCSPNVVTFNT--LLDGLCLTGKLDEANAMFEYMVERNCEPT 284

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y  +I G+++  + ++A  +  +M    + P   TY  LI         ++    LK
Sbjct: 285 AVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILK 344

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
            M   G  P+ +TY  +I      G ++R    +   +  R
Sbjct: 345 RMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSR 385



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 1/162 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           VI  L+N    +   +VF      E      F     +  L + G   +A + F +M   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              P++  Y  ++ G     K + AL  L +M+   L+P +   + L+    K    D  
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
               K +  D CS D I+YN+L      A  + R    +  M
Sbjct: 127 YELYKRLS-DECSLDRISYNMLTYGLCKADQIDRALAVFGEM 167


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
            +EF    +I     EGL++EA   F  ++     P    YN+++  + K G ++EAL  
Sbjct: 278 FDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSI 337

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           + EM++ N  P + TY+ L+ AY +   Y+E    +  M  +G  P+ +TY  +I  +  
Sbjct: 338 MKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGR 397

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           A  + +    Y  M          T  AIL      GML K
Sbjct: 398 AAQVDKALSLYDQMKESGCAPNVCTYNAIL------GMLGK 432



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 36/274 (13%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +++      G  EE       M    +KP+   Y ++I+ Y +  + ++AL   ++MKE 
Sbjct: 355 ELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKES 414

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             +P   TY+ ++   GK    +E+   L  MK+DGC+P+ IT+N ++      G+ K +
Sbjct: 415 GCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYV 474

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAE 322
           +  ++ M +        T   ++ A    G     EK Y  +L +  TP           
Sbjct: 475 KRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTP----------S 524

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           V   N + + L   GD            W             R  +SV+++M++   + +
Sbjct: 525 VATYNALLNALARRGD------------W-------------RTAESVIKDMKNKGFKPS 559

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            T+ ++IL +Y K    K +  +  ++   H+ P
Sbjct: 560 ETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFP 593



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 36/192 (18%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNL------ 205
           G  E AV  F++M    L P+L  YN ++  Y K+G+ +N+ L  L+EM+   L      
Sbjct: 223 GKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFT 282

Query: 206 -----------------------------SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
                                        +P + TY+ L+Q +GK  +Y E    +K M+
Sbjct: 283 CSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEME 342

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            + C PD +TYN L+  +  AG  +       +M    +   + T   +++AY     +D
Sbjct: 343 DNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVD 402

Query: 297 KMEKFYKRLLNS 308
           K    Y ++  S
Sbjct: 403 KALSLYDQMKES 414



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 142/323 (43%), Gaps = 20/323 (6%)

Query: 108 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A++  L   S+S ++ ++  DM   ++    N      ++ M   +G+ +   R FQEM+
Sbjct: 425 AILGMLGKKSQSEEMMKILCDM--KVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMK 482

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
               +P  + +N++I    + G   +A    +EM E   +P   TY+ L+ A  +   + 
Sbjct: 483 SCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWR 542

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +  +K MK  G  P   +Y+L++  +A  G +K +    K +     H+  S M+   
Sbjct: 543 TAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDG--HIFPSWMLLRT 600

Query: 287 DAYMNFG--MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR--LDDLGDDLAS 342
               NF    L  ME+ ++ L   +   K DLV   + +     MFSR  + D   ++  
Sbjct: 601 LILANFKCRALAGMERAFQAL--QKHGYKPDLVVFNSML----SMFSRKNMHDRAHEIMH 654

Query: 343 RIGRTELVWCLRLLSHACLLSHRG-----IDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            I    L   L   +    L  RG      + ++RE++++  + ++ + N ++  + +  
Sbjct: 655 LIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQG 714

Query: 398 DFKHLRVLLSELPTRHVKPDIVT 420
                   LSE+ +R ++P IVT
Sbjct: 715 LMHEALRTLSEMISRGIRPCIVT 737



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 101/246 (41%), Gaps = 2/246 (0%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           Y +I+H YS+ GK+  A+    +M E  LSP   TY+ ++  YGK  + +++I   L  M
Sbjct: 212 YTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G   D  T + +I      GLL   +  +  + ++     + T  A+L  +   G+ 
Sbjct: 272 RSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIY 331

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLR 354
            +     K + ++  P       +L   Y++   +     L D +    I    + +   
Sbjct: 332 SEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTM 391

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           + ++          S+  +M+ +    NV T N IL    K    + +  +L ++     
Sbjct: 392 INAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGC 451

Query: 415 KPDIVT 420
            P+ +T
Sbjct: 452 APNRIT 457



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A    +E++    K  L  YN++I G+ + G  +EAL  L+EM    + P   TY+  +
Sbjct: 683 KAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFV 742

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             Y    M+ EID  L  M    C P+ +TY +++  +  A
Sbjct: 743 GGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +KS +  +N+  +I   C +GLM EA+R   EM    ++P +  YN+ + GY+  G F E
Sbjct: 696 DKSDLISYNT--VIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAE 753

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               L+ M + +  P   TY  ++  Y K K + E
Sbjct: 754 IDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKE 788



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 10/176 (5%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +F  W  +    +  F  + + GM           RAFQ ++    KP L ++NS++  +
Sbjct: 591 IFPSWMLLRTLILANFKCRALAGM----------ERAFQALQKHGYKPDLVVFNSMLSMF 640

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
           S+    + A   ++ ++E  L P   TY+ L+  Y +     + +  L+ ++  G   D 
Sbjct: 641 SRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDL 700

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
           I+YN +I+ F   GL+     T   M+++ +     T    +  Y   GM  ++++
Sbjct: 701 ISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDE 756


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 141/312 (45%), Gaps = 18/312 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEG--------FALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +I  +C+   +++A+   ++M G         +++P + IYN++I G  K+G+  E L  
Sbjct: 346 LINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGL 405

Query: 197 LNEMK-EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +  M+ +   +P + TY+ LI  + K    ++       M  +G +P+ +T N L+    
Sbjct: 406 MERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMC 465

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G +      +     + M   + T  A+++A+ N    +K  + +  +L S       
Sbjct: 466 RTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAI 525

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLAS--RIG-RTELVWCLRLLSHACLLS--HRGIDSV 370
           +   L   + +     R+ D    LA   ++G R + V    L+   C  +  HR +  +
Sbjct: 526 VYYTLISGFSQA---GRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHR-VFEM 581

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           ++EME A ++ +  T N ++    K  D K  + ++ ++    V P + T G + +A  +
Sbjct: 582 LKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCL 641

Query: 431 GFDGTGALEMWK 442
             +G  A+E++K
Sbjct: 642 NGNGNEAMEIFK 653



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 43/287 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C     E+A+  F EM      P   +Y ++I G+S+ G+  +A   L E+K++ 
Sbjct: 495 LINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG 554

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P +  Y+ LI  + +   +  +   LK M+  G  PD ITYN LI   +  G LK  +
Sbjct: 555 IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQ 614

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY-MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              + M+   +    +T  A+++AY +N    + ME F      S+ P            
Sbjct: 615 KVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVP---------PNT 665

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-- 381
            I N + +                             L  +  + S V  ME  K+ W  
Sbjct: 666 VIYNILINS----------------------------LCKNNKVKSAVSLMEDMKI-WGV 696

Query: 382 --NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             N TT N I       KD + +   +  +      PD +T+ IL +
Sbjct: 697 TPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE 743



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C  G   EA+  F++M+  + + P+  IYN +I+   K  K   A+  + +MK  
Sbjct: 635 VINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIW 694

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            ++P + TY+ + +     K  +++   +  M    C+PD+IT  +L +  +  G ++R+
Sbjct: 695 GVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERL 754

Query: 264 E 264
           +
Sbjct: 755 K 755


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 124/285 (43%), Gaps = 3/285 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C+  L+ EA   F EM    +   +  YN++I+G+  +GK  EA+  LNEM    
Sbjct: 205 IIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY+ L+ A  K     E    L +M      PD ITY+ L+  +     +K+ +
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M    +     T   +++ +    M+D+    +K +              L +  
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWN 382
            K+   S + DL D++  R    +++    L+   C   H  R I ++  +M+  ++R N
Sbjct: 385 CKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI-ALFNKMKDQEIRPN 443

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + T  I+L    K    K  + +  +L T+    ++ T  ++ + 
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMING 488



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 150/361 (41%), Gaps = 17/361 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G +++A+    ++     + +   Y ++I+G  KIG    A+ FL ++    
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRL 194

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ +I A  KY++  E       M + G S D +TYN LI  F   G LK   
Sbjct: 195 TKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAI 254

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
           G    M+ K ++    T   ++DA    G + + +     +L  +  +K D++    L +
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML--KACVKPDVITYSTLMD 312

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKV 379
            Y   Y   +   + + + S +G T  V    +L +     ++ +D  +   +EM    +
Sbjct: 313 GYFLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILING-FCKNKMVDEALNLFKEMHQKNM 370

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
              + T + ++    K     ++  L+ E+  R    D++T   L D    G    G L+
Sbjct: 371 VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLID----GLCKNGHLD 426

Query: 440 MWKRIGFLFKTVEIN----TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
               +    K  EI     T  ++L    KG  L+  +EV+  L         +TY  +I
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 496 D 496
           +
Sbjct: 487 N 487



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 147/348 (42%), Gaps = 3/348 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++AV  F  M      P +  +N I+  ++K+  ++ A+   + ++   + P   T + 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 215 LIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI  +    ++     +  K++K  G  PD +T N LI+     G +K+    +  +L +
Sbjct: 100 LINCFCHMGQITFGFSVLAKILK-RGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
              L   +   +++     G      KF +++    T     +   + +   K  + S  
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEA 218

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLA 392
             L  ++A +    ++V    L+   C++   +    ++ EM    +  NV T NI++ A
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
             K    K  + +L+ +    VKPD++T   L D   + ++   A  ++  +  +  T +
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 338

Query: 453 INTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
           ++T  +++  + K   +     ++  +   +      TY +LID + K
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  +++EA+  F+EM    + P +  Y+S+I G  K G+ +     ++EM++  
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRG 404

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY  LI    K    D        MK     P+  T+ +L+      G LK  +
Sbjct: 405 QPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQ 464

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +LTK  HL   T   +++ +   G+L++
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEE 497



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC+EG ++EA      M    +KP +  Y++++ GY  + +  +A    
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M  M ++P   TY  LI  + K KM DE     K M      P  +TY+ LI     +
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G +  +      M  +       T  +++D     G LD+    + ++
Sbjct: 388 GRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM 435



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           KN    R I  +F+  K+ ++ R N F    ++  LC+ G +++A   FQ++       +
Sbjct: 421 KNGHLDRAI-ALFNKMKD-QEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN +I+G+ K G   EAL  L++M++    P + T++ +I A  K    D+ +  L+
Sbjct: 479 VYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLR 538

Query: 234 MMKLDG 239
            M   G
Sbjct: 539 QMIARG 544



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++ A+  F +M+   ++P++  +  ++ G  K G+  +A     ++    
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ +I  + K  + +E    L  M+ +GC P+  T+  +I       L K+ E
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII-----IALFKKDE 529

Query: 265 GTYKSMLTKRMHLRS 279
                 L ++M  R 
Sbjct: 530 NDKAEKLLRQMIARG 544


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 93/194 (47%), Gaps = 5/194 (2%)

Query: 118 RSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           ++ ++   ++++K + ++  ++  +   +   LC+   ++ A+  F EME  A+ PSL  
Sbjct: 119 KNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLT 178

Query: 177 YNSIIHGYSKIGKFNEALLFLNEM----KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           YN +++GY + G+  +A+  L EM    K  ++ P   +Y+ +I  + K +        L
Sbjct: 179 YNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVL 238

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M   GCSP+ +T+N L+      G L      ++ M+ +     + T   ++  +   
Sbjct: 239 RRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARA 298

Query: 293 GMLDKMEKFYKRLL 306
             +DK   ++  +L
Sbjct: 299 LRIDKANDYFVDML 312



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 66/171 (38%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           ++   +I   C+   +  A    + M      P++  +N+++ G    GK +EA      
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E N  P + TY  LI  + +    D+ +     M   G  P+  TY  LI     A  
Sbjct: 276 MVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANK 335

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           ++      K M +        T   ++ A    G +++  K +   + SRT
Sbjct: 336 VEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRT 386



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++RQ+P    + + + KS     +  FN+  ++  LC  G ++EA   F+ M     +P+
Sbjct: 227 KARQLPTARYVLRRMIKSGCSPNVVTFNT--LLDGLCLTGKLDEANAMFEYMVERNCEPT 284

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y  +I G+++  + ++A  +  +M    + P   TY  LI         ++    LK
Sbjct: 285 AVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILK 344

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
            M   G  P+ +TY  +I      G ++R    +   +  R
Sbjct: 345 RMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSR 385



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 1/162 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           VI  L+N    +   +VF      E  +   F     +  L + G   +A + F +M   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              P++  Y  ++ G     K + AL  L +M+   L+P +   + L+    K    D  
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
               K +  D CS D I+YN+L      A  + R    +  M
Sbjct: 127 YELYKRLS-DECSLDRISYNMLTYGLCKADQIDRALAVFGEM 167


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 163/380 (42%), Gaps = 33/380 (8%)

Query: 58  YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSS 117
           Y S+   TLL++   + +     I          L IL+ D   +K  +   I   + + 
Sbjct: 141 YPSSDSLTLLLDHLVKTKQFRVTINVF-------LNILESDFRPSKFMYGKAI---QAAV 190

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +   + +  +++  ++  RI  + F    +I  LC+   M +A + F EM    L PSL 
Sbjct: 191 KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN++I GY K G   ++      MK  ++ P   T++ L++   K  M ++ +  LK M
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           K  G  PD  T+++L   ++     +   G Y++ +   + + + T   +L+A    G +
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           +K E+   R +       E +   + + Y +          GD + +R+ + E +    +
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRK---------GDLVGARM-KIEAMEKQGM 420

Query: 356 ----LSHACLLSH-------RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
               L++ CL+            +  V +M+   V  +V T NI++  Y +  +F     
Sbjct: 421 KPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFD 480

Query: 405 LLSELPTRHVKPDIVTIGIL 424
           +L E+      P++V+ G L
Sbjct: 481 ILKEMEDNGTMPNVVSYGTL 500



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 130/314 (41%), Gaps = 36/314 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE G ME A +   +M+   + PS+E YN +I GY +  +F++    L EM++  
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y  LI    K     E  +  + M+  G SP    YN+LI      G ++   
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAF 549

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-------- 316
              K ML K + L   T   ++D     G L + E     +  SR  LK D+        
Sbjct: 550 RFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI--SRKGLKPDVFTYNSLIS 607

Query: 317 -------VRKLAEVY-----------IKNY--MFSRLDDLGDDLASRI-GRTELVWCLRL 355
                  V++   +Y           +K Y  + S     G +L  R+ G   L   L +
Sbjct: 608 GYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLV 667

Query: 356 LSHA--CLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            +    C   H  ++   ++ ++M    +  + TT N ++L  LK+     +R L+ E+ 
Sbjct: 668 YNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMN 727

Query: 411 TRHVKPDIVTIGIL 424
            R ++P+  T  I+
Sbjct: 728 AREMEPEADTYNII 741



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C +G +  A    + ME   +KP    YN +I  + ++G+   A   +
Sbjct: 388 NEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEV 447

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N+MK   +SP  +TY+ LI  YG+   +D+    LK M+ +G  P+ ++Y  LI      
Sbjct: 448 NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKG 507

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             L   +   + M  + +  +      ++D   + G ++   +F K +L
Sbjct: 508 SKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEML 556



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 6/177 (3%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +I   F   K + K  I  N      +I  L   G + EA     E+    LKP +  YN
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I GY   G     +    EMK   + P   TY  LI    K    + I++  ++    
Sbjct: 604 SLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK----EGIELTERLFGEM 659

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              PD + YN ++  +A  G +++     K M+ K + L  +T  +++   +  G L
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKL 716



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +  +E   R F EM   +LKP L +YN ++H Y+  G   +A     +M E ++   
Sbjct: 643 LCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY+ LI    K     E+   +  M      P+  TYN++++
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVK 743



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ME+A    ++M   ++      YNS+I G  K+GK  E    ++EM    + P++DTY
Sbjct: 679 GDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTY 738

Query: 213 DGLIQAYGKYKMY 225
           + +++ + + K Y
Sbjct: 739 NIIVKGHCEVKDY 751


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++NE     +I   C++G +++A+ A + M+   +KPS+  YN++I+GY  +G+ +EA  
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARE 421

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L+EM+   L P   TY  +I AY K    +   ++  +M++  G  PD ITY+ LI+  
Sbjct: 422 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE-KGVLPDAITYSSLIRVL 480

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                L      +K+M+   +     T  +++D +   G ++     + +++ +
Sbjct: 481 CGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKA 534



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 144/362 (39%), Gaps = 40/362 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC  G  +EA+   ++M G    P++  YN+++  + + G+ + A   +
Sbjct: 189 NVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLV 248

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M+E  L P   T++ ++    K    ++       M  +G +PD ++YN L+  +  A
Sbjct: 249 GMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKA 308

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G        +  M  K +     T  +++      G L++     +++      + E   
Sbjct: 309 GCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTF 368

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             L + + K      LDD                         LL+ RG       M+  
Sbjct: 369 TALIDGFCKKGF---LDD------------------------ALLAVRG-------MKQC 394

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
           +++ +V   N ++  Y  +      R LL E+  + +KPD+VT   +  A     D   A
Sbjct: 395 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA 454

Query: 438 LEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
            E+ +++   G L   +  ++  L+  + G+   L     ++ ++     +   +TY +L
Sbjct: 455 FELNQQMLEKGVLPDAITYSS--LIRVLCGEKR-LSDAHVLFKNMIKLGLQPDEFTYTSL 511

Query: 495 ID 496
           ID
Sbjct: 512 ID 513



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 17/182 (9%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I +LC E  + +A   F+ M    L+P    Y S+I G+ K G    AL   ++M +
Sbjct: 474 SSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVK 533

Query: 203 MNLSPQSDTYDGLIQAYGK-----------YKMYDEIDMCLKMMKLDG----CSPDHITY 247
             + P   TY  LI    K           +K+Y E D      K D     C    +  
Sbjct: 534 AGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE-DPIPANTKYDALMHCCRKAELKS 592

Query: 248 NL-LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            L L++ F   GL+   +  Y+SML +  +L  S    ++  +   G + K   F+K++L
Sbjct: 593 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 652

Query: 307 NS 308
             
Sbjct: 653 QG 654



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C +GLM EA + +Q M          +Y+ +IHG+ + G   +AL F  +M +   +P 
Sbjct: 600 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPN 659

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           S +   LI+   +  M  E D  ++ + L+ CS
Sbjct: 660 STSTISLIRGLFENGMVVEADQVIQQL-LNYCS 691


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 9/330 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    ++   C++G  ++A+  F++  G  L+PS+ +YN++I G  + G    AL  +
Sbjct: 434 DEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLM 493

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEM E    P   TY+ +I    K     + +  +      GC PD  TYN L+  +   
Sbjct: 494 NEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQ 553

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             L         M ++ M     T   +L+        +++ + +K +            
Sbjct: 554 LKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITY 613

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
             + E    +   +   DL  ++ S+    ++V    L++  C +    G   + R ME 
Sbjct: 614 NTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEK 673

Query: 377 A-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
              V     T NII+ A+ +  + K    L SE+      PD  T  +L D    GF  T
Sbjct: 674 QYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLID----GFCKT 729

Query: 436 GALEMWKRIGFLFKTVEINTDPLVLAVYGK 465
           G +    +  FL + +E    P  L  +G+
Sbjct: 730 GNVNQGYK--FLLENIEKGFIP-SLTTFGR 756



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F     I  LC+EG ++ AVR    +    L+P +  YN++I G  +  +  EA   L
Sbjct: 329 NLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECL 388

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M      P   TY+ +I  Y K  M  + +  LK     G  PD  TY  L+  F   
Sbjct: 389 HKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQD 448

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMV 283
           G   +    +K  L K   LR S +V
Sbjct: 449 GDPDQAMAVFKDGLGK--GLRPSIIV 472



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 48/314 (15%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +  FN  K++  LC++G + E+ R F ++    + P+L  +N  I G  K G  + A+  
Sbjct: 295 VTTFN--KLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  +    L P   TY+ +I    +     E + CL  M   G  P+  TYN +I  +  
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G++       K  + K       T  ++++ +   G  D+    +K             
Sbjct: 413 KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFK------------- 459

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID----SVVR 372
                            D LG  L     R  ++    L+   C    +G+      ++ 
Sbjct: 460 -----------------DGLGKGL-----RPSIIVYNTLIKGLC---QQGLILPALQLMN 494

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRI 430
           EM     + ++ T N+I+    KM        L+ +  T+   PDI T   L D   R++
Sbjct: 495 EMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQL 554

Query: 431 GFDGTGALEMWKRI 444
             D   A+E+  R+
Sbjct: 555 KLD--SAIELVNRM 566



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G ++EAV  F+ M+ F   PS+  YN+I++   + G FN+A      MK+  +     T
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 212 YDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           Y   I+++ +  + Y  + + L+ M + GC  + + Y  ++  F   G   R    +  M
Sbjct: 228 YTIRIKSFCRTGRPYAALRL-LRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           L   +    +T   ++ A    G + + E+ + ++L
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVL 322


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            + + S S  I + F++   +EK RI  ++     ++  LC  G ++EA +   EM    
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P L  YN++I GYS  G   +AL   NEM     +P   TY+ LIQ   K    D+ +
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             +K M  +G +PD  TY  LI+
Sbjct: 523 NMVKEMVENGITPDDSTYISLIE 545



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 20/320 (6%)

Query: 117 SRSRQIPQVFDMWKNI-EKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKP 172
           SR R +    D+ + + E+  I  N++    +I   C+ G ++EAV+ F EM     +KP
Sbjct: 197 SRGR-VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 255

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
              +YN++I GY   GK + ALL+ + M E  ++    TY+ L+ A        E    +
Sbjct: 256 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 315

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M   G + D  TYN+LI      G +K+    +++M  + +     T  +++ A    
Sbjct: 316 EEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 375

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRT 347
           G + + +K +   +  R  ++ DLV  L    I ++  S   D     +G+    RI   
Sbjct: 376 GQVQETDKLFDEAV--RRGIRPDLV--LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431

Query: 348 ELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           ++ +   L+   CLL    +D    ++ EM    ++ ++ T N ++  Y    D K    
Sbjct: 432 DVTYNT-LMRGLCLLGR--VDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALR 488

Query: 405 LLSELPTRHVKPDIVTIGIL 424
           + +E+  +   P ++T   L
Sbjct: 489 IRNEMMNKGFNPTLLTYNAL 508



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 3/194 (1%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            + +  ++++N+ +   R        +I  L ++G ++E  + F E     ++P L +YN
Sbjct: 342 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 401

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I+ +S  G  + A   + EM++  ++P   TY+ L++        DE    +  M   
Sbjct: 402 ALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKR 461

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  PD +TYN LI  ++  G +K        M+ K  +    T  A++      G  D  
Sbjct: 462 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 521

Query: 299 EKFYKRLL-NSRTP 311
           E   K ++ N  TP
Sbjct: 522 ENMVKEMVENGITP 535



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 160 RAFQ---EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           RAF+   EME   + P    YN+++ G   +G+ +EA   ++EM +  + P   TY+ LI
Sbjct: 415 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 474

Query: 217 QAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
             Y  K  + D + +  +MM   G +P  +TYN LIQ     G     E   K M+   +
Sbjct: 475 SGYSMKGDVKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 533

Query: 276 HLRSSTMVAILDA 288
               ST +++++ 
Sbjct: 534 TPDDSTYISLIEG 546



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 130/337 (38%), Gaps = 56/337 (16%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSP 207
           LC  G    A+   ++M     +P+   YN++I G+   G+   AL  + EM+E   ++P
Sbjct: 164 LCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 219

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAG-----LLK 261
              TY  +I  + K    DE       M   G   P+ + YN LI  +   G     LL 
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 279

Query: 262 R-----------------------MEGT-------YKSMLTKRMHLRSSTMVAILDAYMN 291
           R                       M+G         + M  K + L   T   +++ +  
Sbjct: 280 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCK 339

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTEL 349
            G + K  + ++ +  SR  ++  +V   + +Y   K       D L D+   R  R +L
Sbjct: 340 EGNVKKALEIFENM--SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDL 397

Query: 350 VWCLRLLSHACLLSHRGIDSVVR------EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           V     L +A + SH    ++ R      EME  ++  +  T N ++     +      R
Sbjct: 398 V-----LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 452

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            L+ E+  R ++PD+VT   L     +  D   AL +
Sbjct: 453 KLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRI 489


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 20/316 (6%)

Query: 117 SRSRQIPQVFDMWKNI-EKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKP 172
           SR R +    D+ + + E+  I  N++    +I   C+ G ++EAV+ F EM     +KP
Sbjct: 157 SRGR-VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 215

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
              +YN++I GY   GK + ALL+ + M E  ++    TY+ L+ A        E    +
Sbjct: 216 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 275

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M   G +PD  TYN+LI      G +K+    +++M  + +     T  A++ A    
Sbjct: 276 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRT 347
           G + + +K +   +  R  ++ DLV  L    I ++  S   D     +G+    RI   
Sbjct: 336 GQVQETDKLFDEAV--RRGIRPDLV--LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391

Query: 348 ELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           ++ +   L+   CLL    +D    ++ EM    ++ ++ T N ++  Y    D K    
Sbjct: 392 DVTYN-TLMRGLCLLGR--VDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALR 448

Query: 405 LLSELPTRHVKPDIVT 420
           + +E+  +   P ++T
Sbjct: 449 IRNEMMNKGFNPTLLT 464



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            + + S S  I + F++   +EK RI  ++     ++  LC  G ++EA +   EM    
Sbjct: 363 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P L  YN++I GYS  G   +AL   NEM     +P   TY+ LIQ   K    D+ +
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             +K M  +G +PD  TY  LI+
Sbjct: 483 NMVKEMVENGITPDDSTYISLIE 505



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 3/194 (1%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
            + +  ++++N+ +   R        +I  L ++G ++E  + F E     ++P L +YN
Sbjct: 302 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 361

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I+ +S  G  + A   + EM++  ++P   TY+ L++        DE    +  M   
Sbjct: 362 ALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTER 421

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  PD +TYN LI  ++  G +K        M+ K  +    T  A++      G  D  
Sbjct: 422 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 481

Query: 299 EKFYKRLL-NSRTP 311
           E   K ++ N  TP
Sbjct: 482 ENMVKEMVENGITP 495



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 160 RAFQ---EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           RAF+   EME   + P    YN+++ G   +G+ +EA   ++EM E  + P   TY+ LI
Sbjct: 375 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434

Query: 217 QAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
             Y  K  + D + +  +MM   G +P  +TYN LIQ     G     E   K M+   +
Sbjct: 435 SGYSMKGDVKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 493

Query: 276 HLRSSTMVAILDA 288
               ST +++++ 
Sbjct: 494 TPDDSTYISLIEG 506



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 123/321 (38%), Gaps = 56/321 (17%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSP 207
           LC  G    A+   ++M     +P+   YN++I G+   G+   AL  + EM+E   ++P
Sbjct: 124 LCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 179

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLL------ 260
              TY  +I  + K    DE       M   G   P+ + YN LI  +   G L      
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 239

Query: 261 -KRM-----------------------EGTYKSMLTKRMHLRS-----STMVAILDAYMN 291
             RM                        GT    L + M  +       T   +++ +  
Sbjct: 240 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 299

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTEL 349
            G + K  + ++ +  SR  ++  +V   A +Y   K       D L D+   R  R +L
Sbjct: 300 EGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 357

Query: 350 VWCLRLLSHACLLSHRGIDSVVR------EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           V     L +A + SH    ++ R      EME  ++  +  T N ++     +      R
Sbjct: 358 V-----LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 412

Query: 404 VLLSELPTRHVKPDIVTIGIL 424
            L+ E+  R ++PD+VT   L
Sbjct: 413 KLIDEMTERGIQPDLVTYNTL 433



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 44/263 (16%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-G 220
           F +M    L      +N ++      GK   AL  L +M      P + TY+ +I  +  
Sbjct: 102 FADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCS 157

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           + ++   +D+  +M +  G +P+  TY  +I  +   G +      +  MLTK      +
Sbjct: 158 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 217

Query: 281 TMV-AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            M  A++  Y + G LD    +  R++                                 
Sbjct: 218 VMYNALIGGYCDQGKLDTALLYRDRMVER------------------------------- 246

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMK 397
                G    V    LL HA  +  RG ++  +V EM    +  +V T NI++  + K  
Sbjct: 247 -----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 301

Query: 398 DFKHLRVLLSELPTRHVKPDIVT 420
           + K    +   +  R V+  +VT
Sbjct: 302 NVKKALEIFENMSRRGVRATVVT 324


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 119/283 (42%), Gaps = 4/283 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++   C+ G +++A +    M    ++P++  Y+++I G  K  KF EA   L E
Sbjct: 130 FNS--LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 187

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK   ++P + TY  LI    K    +E +  L+ M   GC+PD + Y+ +I  F  +G 
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-R 318
           L   + T + M  +R      T   ++D     G + + +    ++  S   L + +   
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYS 307

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESA 377
            +     K+ M      L D +       ++V    ++   C        + +++ M+ A
Sbjct: 308 TVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               NV T   ++    K +       ++ E+      P++VT
Sbjct: 368 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 410



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  ++ EA +    M      P +  Y +II G  K G+  EA   L  MK   
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI    K +  DE +  ++ M+  GC P+ +TYN ++     +G +K  +
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 428

Query: 265 GTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRL 305
              + M   R      ++T   I++A M+  ++ + E+  +++
Sbjct: 429 QLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    II  +   G ++ A+   + M      P++  Y ++I  +++  K  EA+  L
Sbjct: 24  DAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLL 80

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM+E    P   TY+ L+ A  K  M       +K M   G +P+ +T+N L+  F   
Sbjct: 81  EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 140

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +         M+ K M     T  A++D       L K +KF    L ++  L+E   
Sbjct: 141 GNVDDARKLLGIMVAKGMRPNVVTYSALIDG------LCKSQKF----LEAKEVLEE--- 187

Query: 318 RKLAEVYIKNYMFSRL-------DDL--GDDLASRI---GRTELVWCLRLLSHACLLSHR 365
            K + V    + +S L       D +   + +  R+   G T  V     + HA   S +
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 366 GIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL-PTRHVKPDIVT 420
            +++   ++EM   +   +V T N ++    K+      +V+L ++  +  V PD+VT
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVT 305



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 20/299 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+  ++  A    ++M      P++  +NS++ G+ K G  ++A   L  M    
Sbjct: 98  LVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 157

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI    K + + E    L+ MK  G +PD  TY+ LI     A  ++  E
Sbjct: 158 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAE 217

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR------ 318
              + M             +I+ A+   G L + +K  + +   R     D+V       
Sbjct: 218 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTVID 275

Query: 319 ---KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
              KL ++     +  ++ + GD L   +  + ++  L   S   + + + +D + +   
Sbjct: 276 GLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL-CKSDMLVEAQKLLDRMCK--- 331

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
            A    +V T   I+    K    +    LL  +      P++VT    I  L  AR++
Sbjct: 332 -AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKV 389



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I  LC+     EA    +EM+   + P    Y+++IHG  K  K  EA  
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQ 218

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            L  M     +P    Y  +I A+ K     E    L+ M+    SPD +TYN +I
Sbjct: 219 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 274



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 16/239 (6%)

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G  + AL  L EMK    +P + T+  +I A        ++D  +  ++  GC P+ +TY
Sbjct: 4   GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANA---GDLDGAMDHLRSMGCDPNVVTY 60

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-----TMVAILDAYMNFGMLDKMEKFY 302
             LI  FA A   K++E   K  L + M  R       T   ++DA     M+   +   
Sbjct: 61  TALIAAFARA---KKLEEAMK--LLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
           K+++             L + + K         L   + ++  R  +V    L+   C  
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC-K 174

Query: 363 SHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           S + +++  V+ EM+++ V  +  T + ++    K    +    +L  +      PD+V
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVV 233


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 22/248 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+ESY      N   A+ +R+      P  I           +  +++      + ++
Sbjct: 121 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAI----------TYQIILKTFVEGDKFKE 170

Query: 122 IPQVFDMWKNIEKSRINEFNSQKI----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
             +VF+   + +KS +     QK+    I M  + G  E+A + F  M G  +  S   Y
Sbjct: 171 AEEVFETLLDEKKSPLKP--DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTY 228

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   S    + E     ++M+  ++ P   +Y  LI+AYG+ +  +E     + M  
Sbjct: 229 NSLM---SFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 285

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P H  YN+L+  FA +G++++ +  +KSM   R+     +   +L AY+N   ++ 
Sbjct: 286 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 345

Query: 298 MEKFYKRL 305
            EKF+KR+
Sbjct: 346 AEKFFKRI 353



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L+ + +M  +P   +Y  L+++YG+    +  +   + M+  G
Sbjct: 88  LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 147

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYM--NFGMLD 296
             P  ITY ++++ F      K  E  ++++L  K+  L+    +  +  YM    G  +
Sbjct: 148 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 207

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K  K +  ++    P        L          S++ D       ++ R+++     ++
Sbjct: 208 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD-------QMQRSDI--QPDVV 258

Query: 357 SHACLLSHRGID-------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           S+A L+   G         SV  EM  A VR      NI+L A+      +  + +   +
Sbjct: 259 SYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 318

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKG 466
               + PD+ +   +  A     D  GA + +KRI   GF    V   T   ++  Y K 
Sbjct: 319 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT---LIKGYAKA 375

Query: 467 HFLRYCEEVYSSL 479
           + +    EVY  +
Sbjct: 376 NDVEKMMEVYEKM 388



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  ++  G   +A      M+   + P   +Y  +
Sbjct: 274 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 333

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +K+DG  P+ +TY  LI+ +A A  +++M   Y+ M    +
Sbjct: 334 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 393

Query: 276 HLRSSTMVAILDAY---MNFG 293
               + +  I+DA     NFG
Sbjct: 394 KANQTILTTIMDASGRCKNFG 414


>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
 gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
          Length = 723

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 123/253 (48%), Gaps = 10/253 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EE    F E++   LKP+   YN ++  Y++  + +     L EM+++ L P   ++  
Sbjct: 395 IEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTC 454

Query: 215 LIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           LI AYG+ K   ++  D  L+M K+ G  P   +Y  LI  ++ +G  ++   +++ M  
Sbjct: 455 LISAYGRTKKMSDMAADAFLRMKKV-GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMWM 513

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T  ++LDA+   G  +K+ + +K +L  +          L + + K  ++  
Sbjct: 514 EGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIE 573

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANI 388
             D+  +   ++G    V    +L +A   +  G D+    +++EM +  ++ +  T + 
Sbjct: 574 ARDVVSEFG-KMGLQPSVMTYNMLMNA--YARGGQDAKLPQLLKEMAALNLKPDSITYST 630

Query: 389 ILLAYLKMKDFKH 401
           ++ A+++++DFK 
Sbjct: 631 MIYAFVRVRDFKR 643



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS    ++ ++WK +  EK +        ++    ++GL  EA     E     L+PS+ 
Sbjct: 532 RSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVM 591

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++ Y++ G+  +    L EM  +NL P S TY  +I A+ + + +       KMM
Sbjct: 592 TYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMM 651

Query: 236 KLDGCSPDHITYNLL 250
              G  PD  +Y  L
Sbjct: 652 VKSGQVPDPRSYEKL 666



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 35/145 (24%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLE-----------------------------------IY 177
           G  E+A  +F+EM    +KPS+E                                    Y
Sbjct: 499 GWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITY 558

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N+++ G++K G + EA   ++E  +M L P   TY+ L+ AY +     ++   LK M  
Sbjct: 559 NTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAA 618

Query: 238 DGCSPDHITYNLLIQEFACAGLLKR 262
               PD ITY+ +I  F      KR
Sbjct: 619 LNLKPDSITYSTMIYAFVRVRDFKR 643



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 49/100 (49%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +E    F++M    +K S +++  ++  +   G   EAL+   EM++  +   +  Y+ L
Sbjct: 326 KEVWEIFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTL 385

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           + AY K    +E++     +K  G  P   TYN+L+  +A
Sbjct: 386 MDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYA 425


>gi|224077264|ref|XP_002305195.1| predicted protein [Populus trichocarpa]
 gi|222848159|gb|EEE85706.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F     IG  C+E  +EEA +  QEME   LKP  + +N ++ G +K G+  E L + 
Sbjct: 337 NSFVYTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFLLEGCAKAGRVEETLSYC 396

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M EM   P    ++ ++    + +     +  L  +  +G   D ITY+ LI  +A  
Sbjct: 397 KKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGFLADEITYSNLISGYAKN 456

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++ M   Y  M  + +        +++    N G L++ EK+ + ++      +ED+ 
Sbjct: 457 NQIQEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAEKYLRIMIGRSLNPREDVY 516

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASR 343
             L +VY +     R  +L +++ S+
Sbjct: 517 EALIKVYFEKGDKRRALNLYNEMVSK 542



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI---------------YNSIIHGYSKIG 188
           KI G  C   ++      F+ +E   ++P L +               Y+ I++   K+G
Sbjct: 258 KIHGKRCSPVVIVNTCLVFRILEEGRVEPGLALLKMMLRKNMILDTVAYSLIVYAKVKLG 317

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
             N A+    EM +   +  S  Y   I AY K +  +E +  L+ M+  G  P   T+N
Sbjct: 318 NLNSAMQVYEEMLKRGFNANSFVYTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFN 377

Query: 249 LLIQEFACAGLLKRMEGTYKSML 271
            L++  A AG ++      K M+
Sbjct: 378 FLLEGCAKAGRVEETLSYCKKMM 400



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEM-----EGFALKPSLEI-YNSIIHGYSKIGKF 190
           ++ FN  +++G LC    +E+  RA + +     EGF      EI Y+++I GY+K  + 
Sbjct: 408 LSAFN--EMVGKLCR---IEDVTRANEMLTNLLDEGFLAD---EITYSNLISGYAKNNQI 459

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            E L    EM+  +LSP    +  LI+        +E +  L++M     +P    Y  L
Sbjct: 460 QEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAEKYLRIMIGRSLNPREDVYEAL 519

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           I+ +   G  +R    Y  M++K + L  S
Sbjct: 520 IKVYFEKGDKRRALNLYNEMVSKGLKLCCS 549


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 30/323 (9%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + A++R         Q  + FD  ++  K+ + N F    +I  LC+     +A+R F+ 
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRS--KNLVPNVFLCSILIDGLCKAKRSIDALRCFRA 69

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+G  +     IY +++ G  K  + ++AL  L+EM++    P   TY+ LI    K   
Sbjct: 70  MQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            D      + MK   CSP  +TYN L+      G L+R    ++ ML +R H        
Sbjct: 130 PDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSP 189

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
            +  Y    ++D + K  +  ++    L E +  +     +  Y       L D L    
Sbjct: 190 NVITYSV--LIDGLCKANR--VSQAVELLESMKARGCSPDVITYTI-----LVDGLCKE- 239

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
            +    W                  V+REM  A    N+ T N +L    + +       
Sbjct: 240 SKVAAAW-----------------EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 282

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           L+ ++  R   P++VT G L D 
Sbjct: 283 LMRDMTCRGCTPNVVTYGTLIDG 305



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 128/330 (38%), Gaps = 20/330 (6%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L    R+R++     + +++       N      +I  LC+ G +++A     +M    
Sbjct: 267 LLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKG 326

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P L IYN +I+G  K  + +E++  L       + P   TY  +I    +    DE  
Sbjct: 327 GTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEAC 386

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  +K  GC PD I Y+ LI     AG +      Y+ M          T   ++D  
Sbjct: 387 RLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGL 446

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLK----EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
              G +D+      R++   TP        L++ L ++   N++   ++ + +   S   
Sbjct: 447 CKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDL---NHLDEAIELVEEMERSNCA 503

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII-LLAYLKMKD--FKHL 402
            + + +   +L H      R +DS V  +E AK R        +  +AY  + D   K  
Sbjct: 504 PSAVTY--NILIHGMCRMER-VDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAG 560

Query: 403 RVL-----LSELPTRHVKPDIVTIGILYDA 427
           RV        E+    V PD +T  IL + 
Sbjct: 561 RVAEALDYFQEMIDNGVIPDHITYSILLEG 590



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+E  +  A    +EM      P+L  YNS++HG  +  + ++AL  + +M    
Sbjct: 232 LVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG 291

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            +P   TY  LI    K  ++ D   M   M+   G +PD + YN+LI
Sbjct: 292 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLI 338



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 56/141 (39%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           ++   N      +I  LC+   + +AV   + M+     P +  Y  ++ G  K  K   
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A   L EM +    P   TY+ L+    + +   +    ++ M   GC+P+ +TY  LI 
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 253 EFACAGLLKRMEGTYKSMLTK 273
                G +K        M+ K
Sbjct: 305 GLCKVGRVKDACAMLADMIDK 325


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 39/341 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +EEA   F++M    L P +  +N++I+GY K G    A   L+ M++ N
Sbjct: 341 LIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN 400

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L++   +     +  + L+ +  +G  PD +TYN+L+  F   G L    
Sbjct: 401 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 460

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM +  +     T  A++D     G L++       ++     L E     L + +
Sbjct: 461 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 520

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL-------RLLSHA----CLLSHRGID----- 368
            K                 IG+ + V  L       R L+ A    C L   G D     
Sbjct: 521 CK-----------------IGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 563

Query: 369 --SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             +++ +M    +  +V T  I++  + +  +      +L  +      P++ T  I+ +
Sbjct: 564 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 623

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
               G    G +E  + I F   +  ++ +    AV  K H
Sbjct: 624 ----GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 660



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C    + EA R F++M      +P+   Y+ +IHG  + G+  EA     EM E    P 
Sbjct: 240 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 299

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY  LI+A     M D+    L  M    C P+  TY +LI      G ++   G ++
Sbjct: 300 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 359

Query: 269 SMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
            ML   +     T  A+++ Y         F +L  MEK
Sbjct: 360 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 398



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+     E  R N      +I  LCE G +EEA +  QEM     +PS   Y  +I  
Sbjct: 250 RVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 309

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
              IG  ++A+  L+EM      P   TY  LI    +    +E +   + M   G  P 
Sbjct: 310 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPG 369

Query: 244 HITYNLLIQEFACAG 258
            IT+N LI  +   G
Sbjct: 370 IITFNALINGYCKEG 384



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA     +M  + L PS+  +  +I G+ + G+   +L  L  MK+   SP   TY  
Sbjct: 561 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 620

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I         +E +  L  M   G SP+H TY +L++    AG L R      +M+   
Sbjct: 621 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 680

Query: 275 MHLRSSTMVAILDAYM 290
               S    A+L  ++
Sbjct: 681 CQPNSHIYSALLSGFV 696



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G    +++  + M+     P++  Y  II+G    G+  EA   L  M    +SP  
Sbjct: 591 CRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 650

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            TY  L++A+ K    D     +  M  +GC P+   Y+ L+  F 
Sbjct: 651 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 696



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++E     +I   C+ G  ++    F+ M       +   +N  +    K  K NEA   
Sbjct: 508 LDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAM 567

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQE 253
           L +M +  L P   T+  LI+ + +     E  + LKM   MK  GCSP+  TY ++I  
Sbjct: 568 LGKMMKYGLVPSVVTHTILIEGHCRA---GETALSLKMLERMKQAGCSPNVYTYTIIING 624

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
               G ++  E    SM +  +     T   ++ A++  G LD+
Sbjct: 625 LCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDR 668



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    II  LC  G +EEA      M  F + P+   Y  ++  + K G+ + A   +
Sbjct: 614 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 673

Query: 198 NEMKEMNLSPQSDTYDGLIQAY 219
           + M +    P S  Y  L+  +
Sbjct: 674 STMVKNGCQPNSHIYSALLSGF 695



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 1/165 (0%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-K 201
           + ++  LC+ G ++ A     ++          +  S++    +     EA     +M K
Sbjct: 198 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 257

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           E N  P S TY  LI    +    +E     + M   GC P   TY +LI+     G+  
Sbjct: 258 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 317

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +       M TK       T   ++D     G +++    ++++L
Sbjct: 318 KAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKML 362


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           K  + +++  L ++ +  +  +V D+    +       +   IIG LC+    +EA++  
Sbjct: 471 KASYSSMLEGLCSTGKVEEAQEVMDLMTK-QGCPPTSSHYALIIGGLCDVERGDEALKML 529

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           Q M     +P+L  Y+ +I+G  K  +  +A+  L+ M E    P   TY  LI  + K 
Sbjct: 530 QVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKI 589

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
              D    C K M+  GC PD + YN+LI  F  +G +++     + ML K  +  ++T 
Sbjct: 590 NKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATY 649

Query: 283 VAIL 286
            +++
Sbjct: 650 FSLM 653



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 136/337 (40%), Gaps = 31/337 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++ A    + M   +  P +  Y S+I G  +    +EA   + +MKE  
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESG 192

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P +  Y+ L+    K    +E+   L+ M   G  PD  +YN ++     +G  +   
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAG 252

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ K+      T  +++D +     +D+ E+           L ED+V +     
Sbjct: 253 KILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER-----------LLEDMVGRRCAPT 301

Query: 325 IKNYM-----FSRLDDLGDDLASRIGRTELVWCLR--LLSHACLLSHRGIDSVVRE---- 373
           +  Y      FSR D L D  A R+        +   L+++ CLL        + E    
Sbjct: 302 VITYTTLIGGFSRADRLAD--AYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359

Query: 374 ---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
              M       +V T +I++    K+      R+LL  +  R  +P++VT   + D    
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMID---- 415

Query: 431 GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           GF   G ++   ++  L K V    D +  +    G+
Sbjct: 416 GFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGY 452



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKN-IEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L    +  Q+ +V  + +  +E  R  + F+   ++  LCE G  EEA +  ++M    
Sbjct: 203 LLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKK 262

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P +  YNS++ G+ K+ K +EA   L +M     +P   TY  LI  + +     +  
Sbjct: 263 CGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAY 322

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             ++ M   G SPD +TYN L+     AG L+      + M+ K       T   +++  
Sbjct: 323 RVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382

Query: 290 MNFGMLD 296
              G +D
Sbjct: 383 CKLGKVD 389



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 142/365 (38%), Gaps = 13/365 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   ++EA +   EM      P   +YN +I G  K+GK + A   L  M E +
Sbjct: 98  LIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS 157

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI    +    DE    ++ MK  G +PD + YN L+        L+ + 
Sbjct: 158 CVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVS 217

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+       + +   ++      G  ++  K  ++++  +          L + +
Sbjct: 218 KLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGF 277

Query: 325 IKNYMFSRLDDLGDDLASRIGR--TELVWCLRLLSHACLLSHRGIDS--VVREMESAKVR 380
            K    S++D+    L   +GR     V     L      + R  D+  V+ +M  A + 
Sbjct: 278 CK---VSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGIS 334

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIG--FDGTGA 437
            ++ T N +L    K    +    LL  +  +   PD+VT  IL +   ++G   D    
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394

Query: 438 LEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
           LEM    G     V  NT   ++  + K   +    +V   ++  S      TY  LID 
Sbjct: 395 LEMMLERGCQPNLVTFNT---MIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDG 451

Query: 498 VIKHN 502
             K N
Sbjct: 452 YCKAN 456



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SR+ ++   + + +++ K+ I+        ++  LC+ G +EEA    + M      P +
Sbjct: 313 SRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDV 372

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y+ +++G  K+GK ++A L L  M E    P   T++ +I  + K    DE    L++
Sbjct: 373 VTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLEL 432

Query: 235 MKLDGCSPDHITYNLLIQEFA 255
           MK   C+PD +TY+ LI  + 
Sbjct: 433 MKEVSCTPDVVTYSTLIDGYC 453



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           T  H+  +I  L +  R  +  ++  +         N +    +I  LC+   +E+A+  
Sbjct: 505 TSSHYALIIGGLCDVERGDEALKMLQVMSE-RGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
              M      P +  Y S+I G+ KI K + A      M++    P    Y+ LI  + +
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
               ++    +++M   GC+PD  TY  L++  
Sbjct: 624 SGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 3/158 (1%)

Query: 154 LMEEAVRAFQEMEGFAL---KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           L++   +A +  + FA+    P    Y+S++ G    GK  EA   ++ M +    P S 
Sbjct: 448 LIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSS 507

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y  +I      +  DE    L++M   GC P+  TY++LI        ++        M
Sbjct: 508 HYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVM 567

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           L K      +T  +++D +     +D   + +K + +S
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDS 605



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           E    F+E      KPS   Y ++I G+S+ G     L   NEM     SP   T++ ++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 217 QAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLT 272
           +AY +     ++D  L   +    CSP   TY +LI         +R++  Y+    M+ 
Sbjct: 67  KAYCQIG---DLDRALSHFRGKMWCSPTAFTYCILIHGLC---QCQRIDEAYQLLDEMIQ 120

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           K  H  ++    ++      G +D      K +L
Sbjct: 121 KDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMML 154


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++NE     +I   C++G +++A+ A + M    +KPS+  YN++I+GY  +G+ +EA  
Sbjct: 322 QMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARE 381

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L+EM+   L P   TY  +I AY K    +   ++  +M++  G  PD ITY+ LI+  
Sbjct: 382 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE-KGVLPDAITYSSLIRVL 440

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                L      +K+M+   +     T  +++D +   G +++    + +++ +
Sbjct: 441 CEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKA 494



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 145/363 (39%), Gaps = 42/363 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I  LC  G  +EA+   ++M G    P++  YN+++  + + G+ + A   +
Sbjct: 149 NVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLV 208

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             M +  L P   T++ ++    K  KM D   +  +MM+ +G +PD ++YN L+  +  
Sbjct: 209 GMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMR-EGLAPDGVSYNTLVGGYCK 267

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG        +  M  K +     T  +++      G L+      +++      + E  
Sbjct: 268 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVT 327

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              L + + K      LDD                         LL+ RG       M  
Sbjct: 328 FTALIDGFCKKGF---LDD------------------------ALLAVRG-------MRQ 353

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
            +++ +V   N ++  Y  +      R LL E+  + +KPD+VT   +  A     D   
Sbjct: 354 CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHS 413

Query: 437 ALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493
           A E+ +++   G L   +  ++   ++ V  +   L     ++ ++     +   +TY +
Sbjct: 414 AFELNQQMLEKGVLPDAITYSS---LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTS 470

Query: 494 LID 496
           LID
Sbjct: 471 LID 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 15/179 (8%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +I +LCEE  + +A   F+ M    L+P    Y S+I G+ K G    AL   ++M +
Sbjct: 434 SSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVK 493

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-------------- 248
             + P   TY  LI    K     E    L  +  +   P +  Y+              
Sbjct: 494 AGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSV 553

Query: 249 -LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             L++ F   GL+   +  Y+SML +  +L  S    ++  +   G + K   F+K++L
Sbjct: 554 LALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 612



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C +GLM EA + +Q M          +Y+ +IHG+ + G   +AL F  +M +   +P 
Sbjct: 560 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPN 619

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           S +   LI+   +  M  E D  ++ + L+ CS
Sbjct: 620 STSTISLIRGLFENGMVVEADQVIQQL-LNCCS 651


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 39/341 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +EEA   F++M    L P +  +N++I+GY K G    A   L+ M++ N
Sbjct: 318 LIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN 377

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L++   +     +  + L+ +  +G  PD +TYN+L+  F   G L    
Sbjct: 378 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 437

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM +  +     T  A++D     G L++       ++     L E     L + +
Sbjct: 438 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 497

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL-------RLLSHA----CLLSHRGID----- 368
            K                 IG+ + V  L       R L+ A    C L   G D     
Sbjct: 498 CK-----------------IGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 540

Query: 369 --SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             +++ +M    +  +V T  I++  + +  +      +L  +      P++ T  I+ +
Sbjct: 541 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 600

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
               G    G +E  + I F   +  ++ +    AV  K H
Sbjct: 601 ----GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 637



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C    + EA R F++M      +P+   Y+ +IHG  + G+  EA     EM E    P 
Sbjct: 217 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 276

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY  LI+A     M D+    L  M    C P+  TY +LI      G ++   G ++
Sbjct: 277 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 336

Query: 269 SMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
            ML   +     T  A+++ Y         F +L  MEK
Sbjct: 337 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 375



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+     E  R N      +I  LCE G +EEA +  QEM     +PS   Y  +I  
Sbjct: 227 RVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 286

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
              IG  ++A+  L+EM      P   TY  LI    +    +E +   + M   G  P 
Sbjct: 287 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPG 346

Query: 244 HITYNLLIQEFACAG 258
            IT+N LI  +   G
Sbjct: 347 IITFNALINGYCKEG 361



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA     +M  + L PS+  +  +I G+ + G+   +L  L  MK+   SP   TY  
Sbjct: 538 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 597

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I         +E +  L  M   G SP+H TY +L++    AG L R      +M+   
Sbjct: 598 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 657

Query: 275 MHLRSSTMVAILDAYM 290
               S    A+L  ++
Sbjct: 658 CQPNSHIYSALLSGFV 673



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G    +++  + M+     P++  Y  II+G    G+  EA   L  M    +SP  
Sbjct: 568 CRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 627

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            TY  L++A+ K    D     +  M  +GC P+   Y+ L+  F 
Sbjct: 628 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 673



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 16/236 (6%)

Query: 66  LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV 125
           +LV+ + +   LN      N   S  L+    DG +T   F A+I  L    R  Q   +
Sbjct: 422 ILVDGFCKEGQLNMAFNIFNSMNSAGLE---PDG-FT---FTALIDGLCKLGRLEQANGI 474

Query: 126 FDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
             +   ++K   ++E     +I   C+ G  ++    F+ M       +   +N  +   
Sbjct: 475 --LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 532

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCS 241
            K  K NEA   L +M +  L P   T+  LI+ + +     E  + LKM   MK  GCS
Sbjct: 533 GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRA---GETALSLKMLERMKQAGCS 589

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           P+  TY ++I      G ++  E    SM +  +     T   ++ A++  G LD+
Sbjct: 590 PNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDR 645



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    II  LC  G +EEA      M  F + P+   Y  ++  + K G+ + A   +
Sbjct: 591 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 650

Query: 198 NEMKEMNLSPQSDTYDGLIQAY 219
           + M +    P S  Y  L+  +
Sbjct: 651 STMVKNGCQPNSHIYSALLSGF 672



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 1/165 (0%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-K 201
           + ++  LC+ G ++ A     ++          +  S++    +     EA     +M K
Sbjct: 175 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 234

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           E N  P S TY  LI    +    +E     + M   GC P   TY +LI+     G+  
Sbjct: 235 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 294

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +       M TK       T   ++D     G +++    ++++L
Sbjct: 295 KAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKML 339


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            + + S S  I + F++   +EK RI  ++     ++  LC  G ++EA +   EM    
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           ++P L  YN++I GYS  G   +AL   NEM     +P   TY+ LIQ   K    D+ +
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
             +K M  +G +PD  TY  LI+
Sbjct: 410 NMVKEMVENGITPDDSTYISLIE 432



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 144/316 (45%), Gaps = 20/316 (6%)

Query: 117 SRSRQIPQVFDMWKNI-EKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKP 172
           SR R +    D+ + + E+  I  N++    +I   C+ G ++EAV+ F EM     +KP
Sbjct: 84  SRGR-VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 142

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
              +YN++I GY   GK + ALL+ + M E  ++    TY+ L+ A        E    +
Sbjct: 143 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 202

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M   G +PD  TYN+LI      G +K+    +++M  + +     T  +++ A    
Sbjct: 203 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 262

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-----LGDDLASRIGRT 347
           G + + +K +   +  R  ++ DLV  L    I ++  S   D     +G+    RI   
Sbjct: 263 GQVQETDKLFDEAV--RRGIRPDLV--LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318

Query: 348 ELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           ++ +   L+   CLL    +D    ++ EM    ++ ++ T N ++  Y    D K    
Sbjct: 319 DVTYNT-LMRGLCLLGR--VDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALR 375

Query: 405 LLSELPTRHVKPDIVT 420
           + +E+  +   P ++T
Sbjct: 376 IRNEMMNKGFNPTLLT 391



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 122 IPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           + +  ++++N+ +   R        +I  L ++G ++E  + F E     ++P L +YN+
Sbjct: 230 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 289

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+ +S  G  + A   + EM++  ++P   TY+ L++        DE    +  M   G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             PD +TYN LI  ++  G +K        M+ K  +    T  A++      G  D  E
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 300 KFYKRLL-NSRTP 311
              K ++ N  TP
Sbjct: 410 NMVKEMVENGITP 422



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 160 RAFQ---EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           RAF+   EME   + P    YN+++ G   +G+ +EA   ++EM +  + P   TY+ LI
Sbjct: 302 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 361

Query: 217 QAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
             Y  K  + D + +  +MM   G +P  +TYN LIQ     G     E   K M+   +
Sbjct: 362 SGYSMKGDVKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 420

Query: 276 HLRSSTMVAILDA 288
               ST +++++ 
Sbjct: 421 TPDDSTYISLIEG 433



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 126/321 (39%), Gaps = 56/321 (17%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSP 207
           LC  G    A+   ++M     +P+   YN++I G+   G+   AL  + EM+E   ++P
Sbjct: 51  LCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 106

Query: 208 QSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL------ 260
              TY  +I  + K    DE + +  +M+      P+ + YN LI  +   G L      
Sbjct: 107 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 166

Query: 261 -KRM-----------------------EGTYKSMLTKRMHLRS-----STMVAILDAYMN 291
             RM                        GT    L + M  +       T   +++ +  
Sbjct: 167 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 226

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTEL 349
            G + K  + ++ +  SR  ++  +V   + +Y   K       D L D+   R  R +L
Sbjct: 227 EGNVKKALEIFENM--SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDL 284

Query: 350 VWCLRLLSHACLLSHRGIDSVVR------EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           V     L +A + SH    ++ R      EME  ++  +  T N ++     +      R
Sbjct: 285 V-----LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 339

Query: 404 VLLSELPTRHVKPDIVTIGIL 424
            L+ E+  R ++PD+VT   L
Sbjct: 340 KLIDEMTKRGIQPDLVTYNTL 360



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 44/263 (16%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-G 220
           F +M    L      +N ++      GK   AL  L +M      P + TY+ +I  +  
Sbjct: 29  FADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCS 84

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           + ++   +D+  +M +  G +P+  TY  +I  +   G +      +  MLTK      +
Sbjct: 85  RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 144

Query: 281 TMV-AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            M  A++  Y + G LD    +  R++                                 
Sbjct: 145 VMYNALIGGYCDQGKLDTALLYRDRMVER------------------------------- 173

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMK 397
                G    V    LL HA  +  RG ++  +V EM    +  +V T NI++  + K  
Sbjct: 174 -----GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 228

Query: 398 DFKHLRVLLSELPTRHVKPDIVT 420
           + K    +   +  R V+  +VT
Sbjct: 229 NVKKALEIFENMSRRGVRATVVT 251


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G ++EA+  F +M      P+L  +N+II G  +  +  +AL   NEM + +
Sbjct: 173 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 232

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  +I    K    DE    L  M  +GC PD + Y  L+  F+ AG L    
Sbjct: 233 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 292

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           G  + M+++       T   ++D     G +D   + ++ L+ ++
Sbjct: 293 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 337



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 132/329 (40%), Gaps = 35/329 (10%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EG 167
           +++ L    R  Q  + FD    +  ++ +  +   +I  LC+ G ++ A   F++M   
Sbjct: 66  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 125

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P+   YN+++ G  K  + + A   + E ++ + +P   TY+ L+ A  +    DE
Sbjct: 126 GGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDE 185

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  M  +G  P  +++N +I     A  L      +  M+ +  H    T   ++D
Sbjct: 186 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID 245

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
                  LD+ ++   R+++     + DLV     V            LG   A R+  +
Sbjct: 246 GLCKSDQLDEAQQLLDRMVSEGC--RPDLVAYTPLV------------LGFSAAGRLD-S 290

Query: 348 ELVWCLRLLSHACL------------LSHRG-IDS---VVREMESAKVRWNVTTANIILL 391
            L    R++S  C+            L   G +D    + RE+ + K   NV T + ++ 
Sbjct: 291 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 350

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            Y +         ++ E+  R   P++VT
Sbjct: 351 GYCRASRVDEGGKVMREMACR---PNVVT 376



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 9/236 (3%)

Query: 68  VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD 127
           V +Y+   A    + R+++ ++   Q+ +     T   F A+I  L  + R     +VF+
Sbjct: 167 VVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFN 226

Query: 128 MWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
             + I++    N      +I  LC+   ++EA +    M     +P L  Y  ++ G+S 
Sbjct: 227 --EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 284

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+ + AL  L  M      P   TY  +I    K    D+     + +  + CSP+ +T
Sbjct: 285 AGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVT 344

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           Y+ LI  +  A  +       + M  +   +  +TM+          M+D+ E+ Y
Sbjct: 345 YSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMI------WGLSMVDRNEEAY 394



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K   N      +IG  C    ++E  +  +EM   A +P++  YN++I G S + +  EA
Sbjct: 337 KCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEA 393

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQA 218
                EM E    P + TY GL +A
Sbjct: 394 YGMFREMSECGFVPDARTYRGLKRA 418



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +++A   F+E+      P++  Y+++I GY +  + +E       M+EM 
Sbjct: 313 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG---KVMREMA 369

Query: 205 LSPQSDTYDGLI----------QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             P   TY+ +I          +AYG   M+ E+  C       G  PD  TY  L
Sbjct: 370 CRPNVVTYNTMIWGLSMVDRNEEAYG---MFREMSEC-------GFVPDARTYRGL 415


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           + +M  N     +  FN+  +I      G +E+      EM+   LKP++  Y SI++ +
Sbjct: 429 LMEMQDNGVNPTVETFNT--LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 486

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K GK  EA+  L++M   ++ P +  Y+ +I AY ++   D+  + ++ MK +G SP  
Sbjct: 487 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 546

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYNLLI+       +   E    S+   R+   + +   ++ A    G +DK     +R
Sbjct: 547 VTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQR 606

Query: 305 L 305
           +
Sbjct: 607 M 607



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +E A   F +M+   +KP    YN++I+G  K  +   A   L EM++  
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 436

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +T++ LI AYG+    ++  + L  M+ +G  P+ ++Y  ++  F   G +    
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                M  K +   +    AI+DAY+  G  D+
Sbjct: 497 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ 529



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  +   G   +AV  F EM   A+ P+   YN++I G+ K G         
Sbjct: 195 NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLR 254

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P + TY+ L+    +     E    L  M      PD  TY++L    +  
Sbjct: 255 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 314

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K M   +   L   + +   T   +L+     G +   E+  + L+N+       + 
Sbjct: 315 GDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 374

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
             L   Y +             + SR  + + +    L++  C          ++ EM+ 
Sbjct: 375 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 434

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V   V T N ++ AY +    +   ++LSE+    +KP++V+ G + +A
Sbjct: 435 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNA 485



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 123/309 (39%), Gaps = 10/309 (3%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           +R + F   K +      G + EAV   + M    A  P+   YN +I G  + G+  +A
Sbjct: 156 ARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA 215

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD-EIDMCLK-MMKLDGCSPDHITYNLLI 251
           +   +EM E  + P   TY+ +I   G  K  D E    L+  M   G  P+ ITYN+L+
Sbjct: 216 VEVFDEMTERAVLPNHITYNTMID--GHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLL 273

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                AG +         M +++M     T   + D     G    M   + + L +   
Sbjct: 274 SGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVT 333

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSV 370
           + +     L     K+   S  +++   L  + +  T +++   +  +       G  S 
Sbjct: 334 IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST 393

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
             +M+S  ++ +  T N ++    K +   + + LL E+    V P + T   L DA   
Sbjct: 394 FGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA--- 450

Query: 431 GFDGTGALE 439
            +  TG LE
Sbjct: 451 -YGRTGQLE 458



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 53/130 (40%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  + EA      +    L P    YN++I      G  ++AL     M +  
Sbjct: 552 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 611

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY  LI   G      E++   + M  +   P +  +N++++ ++  G   + E
Sbjct: 612 IKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 671

Query: 265 GTYKSMLTKR 274
              K ML KR
Sbjct: 672 DLRKEMLQKR 681


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 35/313 (11%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           TK+     ++FLK       +P VF             +NS  +I   C+EG +E+A + 
Sbjct: 642 TKEAMGVFLKFLKTGV----VPDVF------------LYNS--LISGFCKEGDIEKASQL 683

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           + EM    + P++ +YN++I+G  K+G+  +A    +E++E +L P   TY  +I  Y K
Sbjct: 684 YDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCK 743

Query: 222 -------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
                  +K++DE       M   G SPD   Y +LI      G L++    +     K 
Sbjct: 744 SGNLTEAFKLFDE-------MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +    S   +++D++   G + +  + +  +++ +          L + Y K  M    +
Sbjct: 797 VG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 335 DLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
            L  D+ +R I    L +   LLS+  + +   + S+ ++ME+  +  +     ++  AY
Sbjct: 856 QLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 915

Query: 394 LK-MKDFKHLRVL 405
            K  K  + L++L
Sbjct: 916 CKEGKSLEALKLL 928



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 118/276 (42%), Gaps = 4/276 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G + +      EME    KP+L  YN+ I G  + G  +EAL     M E  
Sbjct: 248 VIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG 306

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  L+  + K K   E  +  + M   G +P+  TY  LI  F   G ++   
Sbjct: 307 LGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEAL 366

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M+T+ + L   T  A++      G + K    +  +L +           L + Y
Sbjct: 367 RIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGY 426

Query: 325 IKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWN 382
           +K++  ++  +L  ++ +R +  +   + + L+S  C  S  +  + V+ +M    V+ N
Sbjct: 427 LKSHDMAKACELLAEMKARKLTPSPFTYSV-LISGLCHSSDLQKANEVLDQMIRNGVKPN 485

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           V     ++ AY++   ++    LL  +    V PD+
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 4/324 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I  L +SS  ++  +V D M +N  K   N F    +I    +E   E A+   + 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKP--NVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    + P L  YN +I G  +  K  EA + L +M E  + P + TY   I  Y K   
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE 571

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
               +   K M   G  P+++ Y +LI+     G       T+K ML K +        A
Sbjct: 572 IQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSA 631

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           I+ +    G   +    + + L +       L   L   + K     +   L D++    
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
               +V    L++  C L        +  E+E   +  +V T + I+  Y K  +     
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAF 751

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
            L  E+ ++ + PD     IL D 
Sbjct: 752 KLFDEMISKGISPDGYIYCILIDG 775



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I    +EG +EEA+R   EM    LK ++  YN++I G +K G+  +A+   
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC--LKMMKLDGCSPDHITYNLLIQ 252
           NEM    L P + TY+ LI  Y   K +D    C  L  MK    +P   TY++LI 
Sbjct: 405 NEMLMAGLEPDTWTYNLLIDGY--LKSHDMAKACELLAEMKARKLTPSPFTYSVLIS 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           ++ + N F     IG LC+ G ++EA+   + M    L P    Y  ++ G+ K  +  E
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKE 329

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A L    M    L+P   TY  LI  + K    +E       M   G   + +TYN +I 
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIG 389

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             A AG + +    +  ML   +   + T   ++D Y+
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYL 427



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 9/229 (3%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG +E+A+  F E +  ++  SL  +NS+I  + K GK  EA    ++M +  L+P   
Sbjct: 778 KEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIV 836

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  LI AYGK +M +E +     M+     P+ +TY  L+  +   G   +M   +K M
Sbjct: 837 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 896

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             + +   +     +  AY   G   +  K   + L     L++D+   L     K    
Sbjct: 897 EARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQI 956

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           S +     +L S +G+ E    L L S  C     G      E E++KV
Sbjct: 957 STV----LELLSEMGKEE----LSLSSKTCNTLLLGFYKSGNEDEASKV 997



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 152/377 (40%), Gaps = 41/377 (10%)

Query: 74  HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE 133
           HQA N ++++L +    PL+IL        D      R    S+ +     VFD++  I+
Sbjct: 137 HQADN-MLEKLLQTRKPPLEIL--------DSLVRCYREFGGSNLT-----VFDIF--ID 180

Query: 134 KSRI----NEFNSQKIIG--------MLCEEGLMEEAVRA---------FQEMEGFALKP 172
           K R+    NE +S  I          ++C   LM + ++A         +  M    + P
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            +  Y ++I  + K+G   +  + L+EM E    P   TY+  I    +    DE     
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           K+M   G  PD  TY LL+  F      K  +  ++SM +  ++    T  A++D ++  
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G +++  +    ++     L       +     K    ++   L +++    G     W 
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEML-MAGLEPDTWT 418

Query: 353 LRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
             LL    L SH    +  ++ EM++ K+  +  T ++++       D +    +L ++ 
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 411 TRHVKPDIVTIGILYDA 427
              VKP++   G L  A
Sbjct: 479 RNGVKPNVFMYGTLIKA 495



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 35/208 (16%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      +IG + + G M +A+  F EM    L+P    YN +I GY K     +A  
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACE 437

Query: 196 FLNEMKEMNLSPQSDTYD-----------------------------------GLIQAYG 220
            L EMK   L+P   TY                                     LI+AY 
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           +   Y+     LK+M  +G  PD   YN LI     A  ++  +     M  K +   + 
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           T  A ++ Y   G +   E+++K +L+S
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSS 585


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++     EGL E+A   F++M+    +P +  YN+++  YS+ G    A    + M+ M 
Sbjct: 333 LVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMG 392

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ AYG+  ++ E +   + +K  G +P   ++ LL+   A +G + R E
Sbjct: 393 CEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCE 452

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                +    +   +  + A+L AY   G LD ME+ 
Sbjct: 453 QVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERL 489



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 119/282 (42%), Gaps = 19/282 (6%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A++ F EM+    K ++  Y ++++ +++ G   +A     +M++    P    Y+ L++
Sbjct: 311 AMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALME 370

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY +            +M+  GC PD  +YN+L+  +  AGL +  E T++S+  + M  
Sbjct: 371 AYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAP 430

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              + + +L A+   G + + E+   +L  S        +  +   Y +     RLDD+ 
Sbjct: 431 TMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARA---GRLDDME 487

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA-------KVRWNVTTANII- 389
             LA+     +L     + SH   ++       +  ME+A       K +     A+++ 
Sbjct: 488 RLLAA----MDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVS 543

Query: 390 ----LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
               +  Y + K++     +  E+      PD  T  +L  A
Sbjct: 544 WTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAA 585



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 58/144 (40%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    +  A     EM+   + PS  +YN+ + G  K     +A+     MK+      +
Sbjct: 233 CNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNT 292

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           +TY  +I  YGK K           M+  GC  +  TY  L+  FA  GL ++ E  ++ 
Sbjct: 293 ETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQ 352

Query: 270 MLTKRMHLRSSTMVAILDAYMNFG 293
           M             A+++AY   G
Sbjct: 353 MQQAGHEPDVYAYNALMEAYSRAG 376



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 13/283 (4%)

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +  P    Y+ LI AYG+ +  ++ +     +    C P   TY LL++ +  A  L R 
Sbjct: 182 SFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRA 241

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           EG    M    +   ++   A LD  +      K  + Y+R+   R     +    +  V
Sbjct: 242 EGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINV 301

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKV 379
           Y K+        + +++ S IG    +     L +A   +  G+    + V  +M+ A  
Sbjct: 302 YGKSKQPMSAMKIFNEMQS-IGCKANICTYTALVNA--FAREGLCEKAEEVFEQMQQAGH 358

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGF--DGTG 436
             +V   N ++ AY +    +    + S +     +PD  +  IL DA  R G   +   
Sbjct: 359 EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEA 418

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
             E  K+ G       + +  L+L+ + +   +  CE+V + L
Sbjct: 419 TFESLKQQGM---APTMKSHMLLLSAHARSGNVGRCEQVMAQL 458



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 48/121 (39%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           + +P +  YN +I  Y +  + N+A      + E    P  DTY  L++AY   +     
Sbjct: 182 SFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRA 241

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +  +  M+  G  P    YN  +     A    +    Y+ M  +R    + T   +++ 
Sbjct: 242 EGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINV 301

Query: 289 Y 289
           Y
Sbjct: 302 Y 302


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 1/288 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I  LC+    ++A R F+EM G  L+P+   Y  +IH   K G   +AL   
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 419

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M++  +      Y+ LI  Y K    D     L  M  +G +P   +Y+ LI      
Sbjct: 420 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 479

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      ++ M  + +   + T  A+++ +     +D+  + + ++++S     E   
Sbjct: 480 GDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 539

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
             + E Y       +   L D +     + +      L+S  CL S     +  V ++E+
Sbjct: 540 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 599

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +    N  +   +L  + +   F     L  E+  R VK D+V+  I+
Sbjct: 600 SYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTII 647



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   ++     EG   E    + EM    +K  L  +  I++   K     ++ + 
Sbjct: 604 LNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 663

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMKE  + P    Y  +I A  K +   +   C   M +DG SP+ +T+ +LI     
Sbjct: 664 FREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCK 723

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +G L   E   K ML   +     T    LD +   G ++K +  +  +L  
Sbjct: 724 SGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQG 775



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 117/310 (37%), Gaps = 35/310 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R ++  +V ++  NI  +  +E   + ++   C    +E A+R   +M      PS    
Sbjct: 271 RVQEAVEVKNVMVNIGVTA-DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANC 329

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           + +I    K     EA     ++ ++ + P    Y+ LI    K + +D+ D   K M  
Sbjct: 330 SFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAG 389

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+ +TY +LI      G+++     +  M  K + +      ++++ Y   G LD+
Sbjct: 390 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDR 449

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                  +      +KE L    A        +S L      +A      +L  C+ L  
Sbjct: 450 ARGLLSGM------VKEGLTPTAAS-------YSPL------IAGLCRNGDLSSCMEL-- 488

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           H             REM    + WN  T   ++  + K K       L  ++   +V P+
Sbjct: 489 H-------------REMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 535

Query: 418 IVTIGILYDA 427
            VT  ++ + 
Sbjct: 536 EVTFNVMIEG 545



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 1/151 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F     +     EG ME+A      M    L  S+  +N +I G  K GK  EA+  +
Sbjct: 745 NKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLM 803

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +++ E   SP   +Y  +I    K    ++       M   G  PD + YN+ I+     
Sbjct: 804 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 863

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           G   +  G Y +M+   +     T  A+L  
Sbjct: 864 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 894


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NEF+   +I  L +EG  E  ++ ++EM     KP+  +Y+++I G  + GK +EA  
Sbjct: 347 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 406

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +L EMK    +P S TY  L+  Y +     +  +  K M  + C+   + Y++LI    
Sbjct: 407 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLC 466

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK     +K ML++ + L      +++  + N  ++++  K + ++L     L+ D
Sbjct: 467 KNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPD 526

Query: 316 LV 317
           +V
Sbjct: 527 VV 528



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +++AV  F+ M           Y++++HG    G+ +EA+  L+EM+   
Sbjct: 181 VIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 240

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    ++ LI A  K          +  M L GC P+ +TYN L+      G L +  
Sbjct: 241 TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 300

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                M+  +      T   ++D ++  G
Sbjct: 301 SLLNRMVANKCVPNDITFGTLVDGFVKHG 329



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFA-LKPSLEIYNSIIHGYSKIGK 189
           K  +  FN+  ++ ++ +EG  + A+  +  +     F+ ++P+   +N +I    ++G 
Sbjct: 133 KQTVKSFNT--VLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGN 190

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            ++A+     M + N      TY  L+         DE    L  M+++G  P+ + +N+
Sbjct: 191 VDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNV 250

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI      G L R      +M  K       T  +++      G LDK      R++ ++
Sbjct: 251 LISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANK 310

Query: 310 TPLKEDLVRKLAEVYIK 326
               +     L + ++K
Sbjct: 311 CVPNDITFGTLVDGFVK 327



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 122/341 (35%), Gaps = 40/341 (11%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E +  N      +I  LC++G +  A +    M      P+   YNS++HG    GK +
Sbjct: 238 VEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLD 297

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCL------------------ 232
           +A+  LN M      P   T+  L+  + K+ +  D + + +                  
Sbjct: 298 KAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLI 357

Query: 233 ----------------KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
                           K M   GC P+ I Y+ LI      G     +     M  K   
Sbjct: 358 SGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHT 417

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
             S T  +++  Y   G + K    +K + ++     E     L     KN        +
Sbjct: 418 PNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIV 477

Query: 337 GDDLASRIGRTELVWCLRLLSHAC--LLSHRGIDSVVREM--ESAKVRWNVTTANIILLA 392
              + SR  + ++V    ++   C   L  +G+  +  +M   + K++ +V T NI+L A
Sbjct: 478 WKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGM-KLFNQMLCHNPKLQPDVVTYNILLNA 536

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           +           +L+ +  +   PD +T  I     R   D
Sbjct: 537 FCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMD 577


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G ++EA+  F +M      P+L  +N+II G  +  +  +AL   NEM + +
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 182

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  +I    K    DE    L  M  +GC PD + Y  L+  F+ AG L    
Sbjct: 183 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 242

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           G  + M+++       T   ++D     G +D   + ++ L+ ++
Sbjct: 243 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 287



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 132/329 (40%), Gaps = 35/329 (10%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EG 167
           +++ L    R  Q  + FD    +  ++ +  +   +I  LC+ G ++ A   F++M   
Sbjct: 16  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 75

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P+   YN+++ G  K  + + A   + E ++ + +P   TY+ L+ A  +    DE
Sbjct: 76  GGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDE 135

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  M  +G  P  +++N +I     A  L      +  M+ +  H    T   ++D
Sbjct: 136 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID 195

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
                  LD+ ++   R+++     + DLV     V            LG   A R+  +
Sbjct: 196 GLCKSDQLDEAQQLLDRMVSEGC--RPDLVAYTPLV------------LGFSAAGRLD-S 240

Query: 348 ELVWCLRLLSHACL------------LSHRG-IDS---VVREMESAKVRWNVTTANIILL 391
            L    R++S  C+            L   G +D    + RE+ + K   NV T + ++ 
Sbjct: 241 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 300

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            Y +         ++ E+  R   P++VT
Sbjct: 301 GYCRASRVDEGGKVMREMACR---PNVVT 326



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 9/236 (3%)

Query: 68  VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD 127
           V +Y+   A    + R+++ ++   Q+ +     T   F A+I  L  + R     +VF+
Sbjct: 117 VVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFN 176

Query: 128 MWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
             + I++    N      +I  LC+   ++EA +    M     +P L  Y  ++ G+S 
Sbjct: 177 --EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 234

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+ + AL  L  M      P   TY  +I    K    D+     + +  + CSP+ +T
Sbjct: 235 AGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVT 294

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           Y+ LI  +  A  +       + M  +   +  +TM+          M+D+ E+ Y
Sbjct: 295 YSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMI------WGLSMVDRNEEAY 344



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K   N      +IG  C    ++E  +  +EM   A +P++  YN++I G S + +  EA
Sbjct: 287 KCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEA 343

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQA 218
                EM E    P + TY GL +A
Sbjct: 344 YGMFREMSECGFVPDARTYRGLKRA 368



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +++A   F+E+      P++  Y+++I GY +  + +E       M+EM 
Sbjct: 263 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG---KVMREMA 319

Query: 205 LSPQSDTYDGLI----------QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             P   TY+ +I          +AYG   M+ E+  C       G  PD  TY  L
Sbjct: 320 CRPNVVTYNTMIWGLSMVDRNEEAYG---MFREMSEC-------GFVPDARTYRGL 365


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 128/303 (42%), Gaps = 25/303 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC+    EEA   F+ M      P++  Y+ +I G  +  K +EA   L
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           NEM +    P   TY  L+    K  K+ + +D+  +M+   GC PD + YN+LI  F+ 
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV-YRGCPPDGVVYNVLIDGFSK 169

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +      ++ ML K       T  ++L  +   G   +++  +K +L          
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC------ 223

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASR---IGRTELVWCLRLLSHACLLSHRGIDS---- 369
              +  ++  N +      +GD + +    +    L     ++S+  L+  RG+ S    
Sbjct: 224 ---VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLI--RGMCSKGKP 278

Query: 370 -----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                ++REM  + V  ++ + NI++  Y K     H   L  E+P   ++PD  +   +
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTI 338

Query: 425 YDA 427
            D 
Sbjct: 339 IDC 341



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   SR  +  +V  ++K++  +    N F    ++   C+ G M EA R F EM    
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P +  YN++I G    GK +EA   L EM    + P   +Y+ LI  Y K    D   
Sbjct: 258 CPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                +   G  PD  +Y+ +I     AG +      +K M+       ++ ++ ++
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 107/297 (36%), Gaps = 13/297 (4%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           +L + G  +     + +M      P+   Y  ++    +  +F EA      M     SP
Sbjct: 26  VLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP 85

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              +Y  LI    + +  DE    L  M   G  P+ +TY  L+      G LK     +
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLF 145

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M+ +           ++D +   G + +  + ++ +L             L   + + 
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRK 205

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-----SHRGIDSVVREMESAKVRWN 382
             F R+  L  D+  +     +     LL   C +     +HR    +  EM S     +
Sbjct: 206 GEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR----LFLEMRSLGCPPD 261

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           V + N ++            + LL E+    V PDIV+  IL D    G+  +GAL+
Sbjct: 262 VVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID----GYSKSGALD 314



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 133/339 (39%), Gaps = 29/339 (8%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN ++   +K G+ +      N+M      P + TY  L+++  + + ++E     + M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GCSP+  +Y++LI        +         M+         T  ++L      G L 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCL-R 354
           +    + R++    P    +   L +       FS+  D+G+  A R+    L   C+  
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLID------GFSKKGDMGE--AYRLFEEMLEKGCIPT 191

Query: 355 LLSHACLL---SHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           + ++  LL   S +G    + S+ ++M       N+ T N +L  + KM D      L  
Sbjct: 192 VFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFL 251

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV----- 462
           E+ +    PD+V+    Y+    G    G     +R+  L + +     P +++      
Sbjct: 252 EMRSLGCPPDVVS----YNTLIRGMCSKGKPHEAQRL--LREMIRSGVGPDIVSYNILID 305

Query: 463 -YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
            Y K   L +  +++  +     E   ++Y  +ID + +
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 119 SRQIPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            R++     ++K +E+S     + F    I+  L + G +++A R  + M      P++ 
Sbjct: 197 GRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVV 256

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+S++HG  K GK +EA   L  M     SP   TY+ +I  + K    DE    L+ M
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
              GC P+ +TY +L+  F   G  +   G  + M+ K
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 354



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 8/278 (2%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+R  +EM      P++  YN+++HG+ K  +   AL  L +M      P   +Y  
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I    K    DE    +  M   GC P+ ITY  L+  F   G L       + M  + 
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRL 333
               + T   I+    +   LD   + +K +  S + P        + +  +K+    ++
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKS---GKV 236

Query: 334 DD---LGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANII 389
           DD   L + + S+     +V    LL   C         ++++ M  +    N+ T N I
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  + K+        LL E+     +P++VT  +L DA
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 334



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 114/295 (38%), Gaps = 39/295 (13%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R N      I+  LC    ++ A++ F+EME   +  P +  Y++I+    K GK ++A 
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             +  M     SP   TY  L+    K    DE    L+ M   GCSP+ +TYN +I   
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G +       + M+         T   +LDA+   G   K E            L E
Sbjct: 301 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG---KAE--------DAIGLVE 349

Query: 315 DLVRKLAEVYIKN-YMFSRLDDLGDDLASRIGRTELVWCLR-LLSHACLLSHRGIDSVVR 372
            +V K    Y+ N + ++ L D+              +C +  +  AC L        + 
Sbjct: 350 VMVEK---GYVPNLFTYNSLLDM--------------FCKKDEVERACQL--------LS 384

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            M       NV + N ++    K        +LL ++ + +  PDIVT   + DA
Sbjct: 385 SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           + I+  LC+ G   +AV  F+EM      P    YN++I+G SK  + ++A+  L EM +
Sbjct: 14  KSILRGLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 72

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
              +P   +Y+ ++  + K    +     L+ M + GC PD ++Y  +I        +  
Sbjct: 73  NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                  M+ +       T   ++D +   G LD   +  +++
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 175



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 132 IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           +EK  + N F    ++ M C++  +E A +    M      P++  YN++I G  K  K 
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 411

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           +E +L L +M   N  P   T++ +I A  K    D       +++  GC+P+ +TYN L
Sbjct: 412 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 471

Query: 251 I 251
           +
Sbjct: 472 V 472



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 5/203 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSL 174
           ++ ++   ++++  I++S    N      ++  LC+    ++A    +EM       P +
Sbjct: 442 KTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 501

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN++I G  K  + + A     +M    L+P   TY  +I +  K++  DE +  L++
Sbjct: 502 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 561

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M  +G  P  ITY  LI  F   G L +     + +L+K  +    T    +D     G 
Sbjct: 562 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 621

Query: 295 LDKMEKFYKRLLNSRTPLKEDLV 317
           L +  +  + +L  R  L  D V
Sbjct: 622 LRQAGELLETML--RAGLVPDTV 642



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +++A+   Q +      P +  ++  I   SK G+  +A   L  M    
Sbjct: 577 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 636

Query: 205 LSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L P + TY+ L++ +    +  D +D+  ++M+  GC PD+ TY  L+
Sbjct: 637 LVPDTVTYNTLLKGFCDASRTEDAVDL-FEVMRQCGCEPDNATYTTLV 683



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M+EA    + M      P    Y ++I G+ K G  ++AL  L  +    
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             P   T+   I    K     +    L+ M   G  PD +TYN L++ F 
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC 652


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     ++    ++G M EA R  +EM      PS+  YN++I+G+   GK  +A+  L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVL 438

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +MKE  L+P   +Y  ++  + +    DE     + M   G  PD ITY+ LIQ F   
Sbjct: 439 EDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQ 498

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              K     +  ML   +     T  A+++AY   G L K  + +  ++
Sbjct: 499 RRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  VI  L    R ++I  V     N     ++E     +I   C+EG   +A+    EM
Sbjct: 278 YNVVINGLCREGRMKEISFVLTEM-NKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               L PS+  Y S+IH   K G  N A  FL++M+   L P   TY  L+  + +    
Sbjct: 337 LRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +E    LK M  +G SP  +TYN LI     AG
Sbjct: 397 NEAYRVLKEMIDNGFSPSVVTYNALINGHCIAG 429



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 17/311 (5%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R I    +++K + +S++  N F    +I   C  G ++ A+R F  ME     P++  Y
Sbjct: 184 RNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTY 243

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I GY K+ K ++    L  M    L P   +Y+ +I    +     EI   L  M  
Sbjct: 244 NTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNK 303

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G S D +TYN LI+ +   G   +    +  ML   +     T  +++ +    G +++
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNR 363

Query: 298 MEKFYKRL------LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
             +F  ++       N RT     LV   ++    N  +  L ++ D+     G +  V 
Sbjct: 364 ATEFLDQMRVRGLCPNERT--YTTLVDGFSQKGYMNEAYRVLKEMIDN-----GFSPSVV 416

Query: 352 CLRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
               L +   ++ + +D  +V+ +M+   +  +V + + +L  + +  D      +  ++
Sbjct: 417 TYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKM 476

Query: 410 PTRHVKPDIVT 420
             + +KPD +T
Sbjct: 477 VAKGIKPDTIT 487



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 15/179 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE+   +EA   F EM    L P    Y ++I+ Y   G   +A+   NEM E  
Sbjct: 491 LIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG 550

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE----------- 253
           + P   TY  LI    K     E    L  +  +   P  +TY+ LI+            
Sbjct: 551 VLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVS 610

Query: 254 ----FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
               F   G++   +  ++SML K      +    ++  +   G + K    YK ++ S
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 27/255 (10%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRA 161
           + ++I+      R+++   +FD     E  R+    +EF    +I   C EG +++A++ 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLFD-----EMLRVGLPPDEFTYTALINAYCMEGDLQKAIQL 542

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD-------- 213
             EM    + P +  Y+ +I+G +K  +  EA   L ++      P   TY         
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602

Query: 214 -------GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
                   LI+ +    M  E D   + M      PD   YN++I      G +++    
Sbjct: 603 IEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSL 662

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           YK M+     L + T++A++      G ++++      +L S    + +  + L E+   
Sbjct: 663 YKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI--- 719

Query: 327 NYMFSRLDDLGDDLA 341
           N+    +D + D LA
Sbjct: 720 NHREGNMDVVLDVLA 734


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 134/313 (42%), Gaps = 3/313 (0%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEF--NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S  + Q  D++  +++  +     N + ++  L ++  ++ A++ F E++  +L P   
Sbjct: 645 KSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF 704

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN +++G  K  + +EA   ++ MK  N+ P   TY  L+   GK    +E       M
Sbjct: 705 VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G  PD + Y  L+      G L      +++M  KR      T  +++D+    G +
Sbjct: 765 TEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRV 824

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
           ++   F++  ++        +   L + + K  M  R  +L +++  R     +V    L
Sbjct: 825 EEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNL 884

Query: 356 LSHACLLSHRGI-DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           LS         + + ++ EME      ++ T NI++    KM            +  + +
Sbjct: 885 LSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGI 944

Query: 415 KPDIVTIGILYDA 427
            PD++T   L ++
Sbjct: 945 VPDVITFTSLIES 957



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +EG +EEA   F+        P++ +Y+S+I  + K G  + AL    EM+   
Sbjct: 814 LIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L+    K    +  +  L+ M+  GC PD +TYN+LI      G++   E
Sbjct: 874 CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAE 933

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             +K M  K +     T  +++++    G +DK+
Sbjct: 934 SYFKRMKEKGIVPDVITFTSLIES---LGKVDKL 964



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 2/184 (1%)

Query: 91  PLQILQHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML 149
           P+Q +   G D     F  +I  L  S    +  + F+  KN+  S  N      ++  L
Sbjct: 309 PIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP-NVVTYTTLVNGL 367

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            + G +EEA   F EM+     P    YN++I G  K G+ + A     EMK+  L P  
Sbjct: 368 AKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNL 427

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +I   GK     E       +K  G  PD  TYN LI      G + ++    K 
Sbjct: 428 RTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKE 487

Query: 270 MLTK 273
           M+ K
Sbjct: 488 MVEK 491



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A    QEM    + P +  +  +I    K G  +EA  F N MK +  SP   TY
Sbjct: 301 GRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTY 360

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+    K    +E       MK + CSPD I YN LI     AG      G +K M  
Sbjct: 361 TTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420

Query: 273 KRM--HLRS-STMVAIL 286
           + +  +LR+ + M+++L
Sbjct: 421 RGLVPNLRTYNIMISVL 437



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G +  A +  +EME     P L  YN +I G  K+G  +EA  +   MKE  + P 
Sbjct: 888 LAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPD 947

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             T+  LI++ GK     E       M+ +G +P  +TYN+LI     AG
Sbjct: 948 VITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAG 997



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 145/380 (38%), Gaps = 51/380 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   +++A+  F  M+   ++P L  Y +++    K  K + AL   NE++E +
Sbjct: 639 VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESS 698

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P +  Y+ ++    K    DE    +  MK     PD  TY  L+     +G   R+E
Sbjct: 699 LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG---RLE 755

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M TK         V    + M+  +L K  K    L+  R   K+  V  +    
Sbjct: 756 EAF-NMFTKMTEEGHEPDVVAYTSLMD--VLGKGGKLSHALIIFRAMAKKRCVPDVVTYS 812

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC---------LLSHRGIDSVV-- 371
                 S +D LG +     GR E  +      +S  C         L+   G   +V  
Sbjct: 813 ------SLIDSLGKE-----GRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDR 861

Query: 372 -----REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 EM+  +   N+ T N +L    K         LL E+      PD+VT  IL  
Sbjct: 862 ALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL-- 919

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVE--------INTDPLVLAVYGKGHFLRYCEEVYSS 478
                 DG G + M       FK ++        I    L+ ++      L  C E++ S
Sbjct: 920 -----IDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEAC-ELFDS 973

Query: 479 LEPYSREKKRWTYQNLIDLV 498
           +E         TY  LID++
Sbjct: 974 MEEEGYNPSVVTYNVLIDIL 993



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 22/210 (10%)

Query: 59  HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDH------FWAVIRF 112
           H+    TL+++     Q  +A++Q L                W + H        +++R 
Sbjct: 180 HTVGTYTLMIKRLAGAQETDAVVQILTAM-------------WKEGHRISMHLLTSLLRT 226

Query: 113 LKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
             +++      ++F+  K+       N +N   ++ +L + G    AV  F ++  F ++
Sbjct: 227 FGSTNNVSGALEIFNQMKSFGCNPSTNMYNF--VLELLVKGGFYHSAVIVFGKLGQFRIQ 284

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P  + +   +H +++ G+ + A   + EM +  + P   T+  LI A  K    DE    
Sbjct: 285 PDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKF 344

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              MK   CSP+ +TY  L+   A AG L+
Sbjct: 345 FNGMKNLRCSPNVVTYTTLVNGLAKAGRLE 374



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G+++EA   F+ M+   + P +  + S+I    K+ K  EA    + M+E   +P   TY
Sbjct: 927  GMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTY 986

Query: 213  DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            + LI   G+     E  M    MK+ GC PD IT  ++
Sbjct: 987  NVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           + E     ++      G ++EAV+  + M+     P++  Y +++ G  K G+ +EA+  
Sbjct: 526 LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSL 585

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L EM++    P   TY  L+ ++ K    +E       M   GC  D  TY+L+I
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVI 640



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 132/352 (37%), Gaps = 48/352 (13%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           EG +E A R   E      K   EI YN+++  +   G  +EA+  L  MK+    P   
Sbjct: 506 EGTIEGADRTV-EYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVV 564

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY  L+   GK    DE    L+ M+  GC P  +TY+ L+  F      +     +  M
Sbjct: 565 TYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
           + K      ST   +++       +D+    + R       +KE+ +  L   Y K  + 
Sbjct: 625 VRKGCVADVSTYSLVINCLCKSDDVDQALDVFGR-------MKEEGMEPLLGNY-KTLLS 676

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           S + D   D A +I                            E++ + +  +    NI++
Sbjct: 677 SLVKDEKIDFALQI--------------------------FNELQESSLVPDTFVYNIMV 710

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
              +K         L+  +  +++ PD+ T   L D    G   +G LE  +      K 
Sbjct: 711 NGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLD----GLGKSGRLE--EAFNMFTKM 764

Query: 451 VEINTDPLVLA------VYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
            E   +P V+A      V GKG  L +   ++ ++          TY +LID
Sbjct: 765 TEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLID 816



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 96  QHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEG 153
           Q DG   T   +  +I+ L  +  +  + Q+   MWK  E  RI+      ++       
Sbjct: 174 QQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWK--EGHRISMHLLTSLLRTFGSTN 231

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
            +  A+  F +M+ F   PS  +YN ++    K G ++ A++   ++ +  + P + T+ 
Sbjct: 232 NVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFR 291

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
             + ++ +    D     ++ M   G  P   T+ +LI     +G +      +  M   
Sbjct: 292 IFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKM-EKFYKRLLNSRTP 311
           R      T   +++     G L++  E F +   N+ +P
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSP 390


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           + +M  N     +  FN+  +I      G +E+      EM+   LKP++  Y SI++ +
Sbjct: 433 LMEMQDNGVNPTVETFNT--LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 490

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K GK  EA+  L++M   ++ P +  Y+ +I AY ++   D+  + ++ MK +G SP  
Sbjct: 491 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 550

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYNLLI+       +   E    S+   R+   + +   ++ A    G +DK     +R
Sbjct: 551 VTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQR 610

Query: 305 L 305
           +
Sbjct: 611 M 611



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +E A   F +M+   +KP    YN++I+G  K  +   A   L EM++  
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 440

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +T++ LI AYG+    ++  + L  M+ +G  P+ ++Y  ++  F   G +    
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                M  K +   +    AI+DAY+  G  D+
Sbjct: 501 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ 533



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  +   G   +AV  F EM   A+ P+   YN++I G+ K G         
Sbjct: 199 NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 258

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P + TY+ L+    +     E    L  M      PD  TY++L    +  
Sbjct: 259 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 318

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K M   +   L   + +   T   +L+     G +   E+  + L+N+       + 
Sbjct: 319 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 378

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
             L   Y +             + SR  + + +    L++  C          ++ EM+ 
Sbjct: 379 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 438

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V   V T N ++ AY +    +   ++LSE+    +KP++V+ G + +A
Sbjct: 439 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNA 489



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 120/307 (39%), Gaps = 6/307 (1%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           +R + F   K +      G + EAV   + M    A  P+   YN +I G  + G+  +A
Sbjct: 160 ARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA 219

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +   +EM E  + P   TY+ +I  + K    +        M   G  P+ ITYN+L+  
Sbjct: 220 VEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 279

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
              AG +         M +++M     T   + D     G    M   + + L +   + 
Sbjct: 280 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 339

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           +     L     K+   S  +++   L  + +  T +++   +  +       G  S   
Sbjct: 340 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 399

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           +M+S  ++ +  T N ++    K +   + + LL E+    V P + T   L DA    +
Sbjct: 400 QMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA----Y 455

Query: 433 DGTGALE 439
             TG LE
Sbjct: 456 GRTGQLE 462



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  + EA      +    L P    YN++I      G  ++AL     M +  
Sbjct: 556 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 615

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY  LI   G     +E++   + M  +   P +  +N++++ ++  G   + E
Sbjct: 616 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 675

Query: 265 GTYKSMLTKR 274
              K ML KR
Sbjct: 676 DLRKEMLQKR 685


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     ++  LC++GL++ A+R  ++M      P +  YN II G       ++A+  L
Sbjct: 495 DEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELL 554

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++++     P   T++ L++       +++ +  +  M    C PD +T+N +I      
Sbjct: 555 SDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQK 614

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           GLL +   T K M        SST   ++DA +  G
Sbjct: 615 GLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAG 650



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 109/277 (39%), Gaps = 3/277 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+E    +A+    EM     +P +  YN +I+     G  +EAL  L+ +      P +
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDA 356

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  ++++    + + E++  L  M  + C+PD +T+N ++      GL+ R       
Sbjct: 357 VTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDH 416

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M          T  +ILD   + G +D   +   RL +            + +       
Sbjct: 417 MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTAN 387
           + R ++L  ++       + V    +++  C   L  R I  VV +M       ++ T N
Sbjct: 477 WERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAI-RVVEQMSENGCSPDIVTYN 535

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            I+              LLS+L +   KPDIVT   L
Sbjct: 536 CIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTL 572



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  V++ L  S R +++ ++  +M  N      +E     I+  LC++GL++ A+     
Sbjct: 359 YTPVLKSLCGSERWKEVEELLAEMTSN--NCAPDEVTFNTIVTSLCQQGLVDRAIEVVDH 416

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M        +  Y+SI+ G   +G+ ++A+  L+ +K     P +  Y  +++     + 
Sbjct: 417 MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           ++  +  +  M    C PD +T+N ++      GL+ R     + M          T   
Sbjct: 477 WERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNC 536

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
           I+D   N   +D   +    L
Sbjct: 537 IIDGLCNESCIDDAMELLSDL 557



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I  LC  G + +A+  F +M      PS+  Y+ ++    K   + +A+  L
Sbjct: 250 DTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALL 309

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+     P   TY+ LI A       DE    L  +   GC PD +TY  +++    +
Sbjct: 310 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGS 369

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              K +E     M +        T   I+ +    G++D+
Sbjct: 370 ERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDR 409



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G MEEA+   + M    L P    Y S+ +G  +    + A+  L  +++  
Sbjct: 675 VISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTG 734

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           LSP +  Y+ ++  + + +  D    C   M   GC PD  TY +L++  A  GLL
Sbjct: 735 LSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLL 790



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +E+A R      G    P    +N +I      G+  +AL   ++M     SP  
Sbjct: 230 CRAGRIEDARRLIN---GMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSV 286

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            TY  L+ A  K   Y +    L  M+  GC PD +TYN+LI      G
Sbjct: 287 VTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEG 335



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 48/227 (21%)

Query: 126 FDMWKNIEKSRIN---------EFNSQKIIGMLCEEGLMEEAVRAFQEME---------- 166
            D W++ E+   N         E     +I  LC++GL+ +A+   + M           
Sbjct: 579 VDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSST 638

Query: 167 --------------GFALK---------PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
                           AL+         P L  YN++I   +K GK  EAL  L  M   
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSN 698

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL---DGCSPDHITYNLLIQEFACAGLL 260
            L P + TY  L  AYG  +  D  D  ++M++     G SPD   YN ++  F      
Sbjct: 699 GLCPDTTTYRSL--AYGVCR-EDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRT 755

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                 +  M++       ST V +L+A    G+LD+ ++    L +
Sbjct: 756 DLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCS 802



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 46/108 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC     E A     EM      P    +N+++    + G  + A+  + +M E  
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG 526

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            SP   TY+ +I         D+    L  ++  GC PD +T+N L++
Sbjct: 527 CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLK 574


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 128/303 (42%), Gaps = 25/303 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++  LC+    EEA   F+ M      P++  Y+ +I G  +  K +EA   L
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           NEM +    P   TY  L+    K  K+ + +D+  +M+   GC PD + YN+LI  F+ 
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV-YRGCPPDGVVYNVLIDGFSK 169

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +      ++ ML K       T  ++L  +   G   +++  +K +L          
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC------ 223

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASR---IGRTELVWCLRLLSHACLLSHRGIDS---- 369
              +  ++  N +      +GD + +    +    L     ++S+  L+  RG+ S    
Sbjct: 224 ---VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLM--RGMCSKGKP 278

Query: 370 -----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                ++REM  + V  ++ + NI++  Y K     H   L  E+P   ++PD  +   +
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTI 338

Query: 425 YDA 427
            D 
Sbjct: 339 IDC 341



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   SR  +  +V  ++K++  +    N F    ++   C+ G M EA R F EM    
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P +  YN+++ G    GK +EA   L EM    + P   +Y+ LI  Y K    D   
Sbjct: 258 CPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
                +   G  PD  +Y+ +I     AG +      +K M+       ++ ++ ++
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 13/297 (4%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           +L + G  +     + +M G    P+   Y  ++    +  +F EA      M     SP
Sbjct: 26  VLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP 85

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              +Y  LI    + +  DE    L  M   G  P+ +TY  L+      G LK     +
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLF 145

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M+ +           ++D +   G + +  + ++ +L             L   + + 
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRK 205

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-----SHRGIDSVVREMESAKVRWN 382
             F R+  L  D+  +     +     LL   C +     +HR    +  EM S     +
Sbjct: 206 GEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR----LFLEMRSLGCPPD 261

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           V + N ++            + LL E+    V PDIV+  IL D    G+  +GAL+
Sbjct: 262 VVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID----GYSKSGALD 314



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 133/339 (39%), Gaps = 29/339 (8%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN ++   +K G+ +      N+M      P + TY  L+++  + + ++E     + M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GCSP+  +Y++LI        +         M+         T  ++L      G L 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCL-R 354
           +    + R++    P    +   L +       FS+  D+G+  A R+    L   C+  
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLID------GFSKKGDMGE--AYRLFEEMLEKGCIPT 191

Query: 355 LLSHACLL---SHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           + ++  LL   S +G    + S+ ++M       N+ T N +L  + KM D      L  
Sbjct: 192 VFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFL 251

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV----- 462
           E+ +    PD+V+    Y+    G    G     +R+  L + +     P +++      
Sbjct: 252 EMRSLGCPPDVVS----YNTLMRGMCSKGKPHEAQRL--LREMIRSGVGPDIVSYNILID 305

Query: 463 -YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
            Y K   L +  +++  +     E   ++Y  +ID + +
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 37/199 (18%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G ++EA++ F  M    L+P +   N I+  Y   G+F EAL+++N+MK+ N+ P S
Sbjct: 411 CRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNS 470

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLD------------------------------- 238
            TY  +I    KY+  ++    L +M  D                               
Sbjct: 471 YTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYR 530

Query: 239 -----GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                GC PD++T  +L+  F+  G + +    +K M  + +        AI+D Y   G
Sbjct: 531 KMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVG 590

Query: 294 MLDKMEKFYKRL-LNSRTP 311
            + +    YK++  N+ TP
Sbjct: 591 NVKRAWSMYKKMKRNNVTP 609



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+  ++ +  +++K + +  +  +EF    II   C  G ++ A   +++M+   + P++
Sbjct: 552 SKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNV 611

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           + Y  ++ G+ K+ + + A + +++MK  +++P   TY  LI  Y + +  D        
Sbjct: 612 KTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDE 671

Query: 235 MKLDGCSPDHITY 247
           MK  G  PDHI Y
Sbjct: 672 MKKKGTLPDHIAY 684



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 66/153 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C EG +E  +   QEME    KP L    S++ G    G  N+ L F +E+    
Sbjct: 301 LVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKG 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 +Y  LI  + K       +  +  M+ +G  PD+I Y  LI+E+   G LK   
Sbjct: 361 YKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEAL 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             + +ML   +     T   I+D Y + G  ++
Sbjct: 421 KNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEE 453



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ M  + G M +A+  F+EM    L      + +II GY ++G    A     +MK  N
Sbjct: 547 LVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNN 606

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           ++P   TY  L+  + K K  D   M +  MK +  +PD  TY  LI  +
Sbjct: 607 VTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGY 656



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-----MEEAVRAFQ 163
           +++ L    +   +  +FD  KN   S  N +    +I   C+E       ME+A    +
Sbjct: 156 LLKCLAEGDKLEAVRSLFDDLKNSGPSP-NVYTYTIMINFYCKERHGQNIDMEQASLILE 214

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EME     P++  Y   IHG  ++G   +A   + +++  N       Y+ LIQ + +  
Sbjct: 215 EMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKG 274

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             DE    L+ MK +G SPD  +Y++L+  F   G
Sbjct: 275 RPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEG 309


>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 20/297 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G    A+  F EM     +P   +YN++I    H   K     +AL +  +
Sbjct: 137 KLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEK 196

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L++A+ + +  ++++   K +     SPD  TYN ++  +   G
Sbjct: 197 MKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNG 256

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           +++ ME     M + +      T   ++D+Y      DKME+ +K LL+S    KE    
Sbjct: 257 MIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHS----KERPTL 312

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSV--VRE-- 373
                 I NY  +R  +  + +  ++  T++ +    +++  L+   G  DSV   RE  
Sbjct: 313 PTFNSMITNYGKARQKENAESVLQKM--TKMKYTPNFITYESLIMMYGFCDSVSKAREIF 370

Query: 374 ---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              +ES K    V+T N +L  Y          +L        + PD  T  +LY A
Sbjct: 371 DDMIESGK-EVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKA 426



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK-----MYDEIDM 230
           +Y+ +I    K G+   A+   +EM+     P S  Y+ LI A+   K     +   +  
Sbjct: 134 VYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGY 193

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             KM  +  C P+ +TYN+L++ FA A  + ++   +K +    +     T   ++DAY 
Sbjct: 194 FEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYG 253

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
             GM+ +ME    R+ +++   K D++    L + Y K   F +++ +   L     R  
Sbjct: 254 KNGMIREMESVLSRMKSNQC--KPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPT 311

Query: 349 L-VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           L  +   + ++         +SV+++M   K   N  T   +++ Y
Sbjct: 312 LPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMY 357



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K +++ + N      ++    +   + +    F++++   + P +  YN ++  Y 
Sbjct: 194 FEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYG 253

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E    L+ MK     P   T++ LI +YGK + +D+++   K +      P   
Sbjct: 254 KNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLP 313

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEK---F 301
           T+N +I  +  A    R +   +S+L K   ++ +   +      M +G  D + K    
Sbjct: 314 TFNSMITNYGKA----RQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREI 369

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           +  ++ S   +K   +  + +VY  N +    D L D+ A  +G
Sbjct: 370 FDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDN-ARNVG 412


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 23/288 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G   EA   F  M    +KP++ IY  +IHGY+  G  +E    LN M E  
Sbjct: 314 LLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP    ++ +  AY K  M DE       MK  G SPD + +  LI      G +    
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAV 433

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M+ + +        +++         +K ++FY  +LN    ++ D+V       
Sbjct: 434 LKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ--GIRPDVV------- 484

Query: 325 IKNYMFSRLDDLGD--------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVREME 375
             N +   L   G         DL  R+G R +++    L+   CL+    ID   + ++
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGR--IDEAAKSLD 542

Query: 376 ---SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              S  ++ +  T N +L  Y +         +  E+    + P +VT
Sbjct: 543 VMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/437 (18%), Positives = 172/437 (39%), Gaps = 23/437 (5%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           L ++    +A++ LI+R+  ++ C   ++ ++          +++   N  R+ +  ++ 
Sbjct: 139 LCDAKRLREAMDILIKRM-PELGCTPDVVSYN---------TLLKGFCNEKRAEEALELL 188

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
            M  + +      N  +   +I     EG +++A   F EM    ++P++  Y ++I G 
Sbjct: 189 HMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGL 248

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K    + A     +M +  + P +DTY+ LI  Y     + E+   L+ M   G  PD 
Sbjct: 249 CKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC 308

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            TY  L+      G  +     + SM+ K +    +    ++  Y   G L +M      
Sbjct: 309 YTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNL 368

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           ++ +       +   +   Y K  M      + + +  +    ++V    L+   C L  
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLG- 427

Query: 365 RGIDSVVR--EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           R  D+V++  +M +  V  N+   N ++     +  ++  +    E+  + ++PD+V   
Sbjct: 428 RVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV--- 484

Query: 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL-RYCEEVYSSLE- 480
             ++         G +   +R+  L + V    D +       GH L    +E   SL+ 
Sbjct: 485 -FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDV 543

Query: 481 --PYSREKKRWTYQNLI 495
                 +   WTY  L+
Sbjct: 544 MLSVGLKPDEWTYNTLL 560



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+M     +  +  FN+  I+  LC +G + +A R    ME    +P +  Y ++I G+ 
Sbjct: 472 FEMLNQGIRPDVVFFNT--ILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHC 529

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
            +G+ +EA   L+ M  + L P   TY+ L+  Y +    D+     + M  +G +P  +
Sbjct: 530 LVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVV 589

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLT 272
           TY+ ++            +  Y +M+T
Sbjct: 590 TYSTILHGLFTTRRFSEAKELYLNMIT 616



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 128/302 (42%), Gaps = 15/302 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N     +++  LC+   + EA+    + M      P +  YN+++ G+    +  EAL
Sbjct: 126 RVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 195 LFLNEMKEM---NLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLL 250
             L+ M +    +  P   +Y  +I  +      D+  ++ L+MM   G  P+ +TY  +
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTV 244

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I     A ++ R EG ++ M+ K +   + T   ++  Y++ G   ++ +  + +  S  
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM--SAH 302

Query: 311 PLKEDLVRKLAEV-YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
            LK D     + + Y+ N    R      D   R G    V    +L H    + +G  S
Sbjct: 303 GLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHG--YATKGALS 360

Query: 370 VVREMESAKVRWNVTTA----NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
            + ++ +  V   ++      NII  AY K         + +++  + + PD+V  G L 
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALI 420

Query: 426 DA 427
           DA
Sbjct: 421 DA 422



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 119/311 (38%), Gaps = 59/311 (18%)

Query: 35  FFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQI 94
           FF  ++IRK I        P++  +      +L+  Y    AL+ +   LN         
Sbjct: 329 FFFDSMIRKGIK-------PNVAIYG-----ILIHGYATKGALSEMHDLLN--------- 367

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEE 152
           L  +   + DH    I F   + ++  I +   ++  +++  ++    N   +I  LC+ 
Sbjct: 368 LMVENGLSPDHHIFNIIFTAYAKKA-MIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKL 426

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA---------------LLFL 197
           G +++AV  F +M    + P++ ++NS+++G   + K+ +A               ++F 
Sbjct: 427 GRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFF 486

Query: 198 NE--------------------MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N                     M+ +   P   +Y  LI  +      DE    L +M  
Sbjct: 487 NTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLS 546

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  PD  TYN L+  +  AG +    G ++ ML   +     T   IL          +
Sbjct: 547 VGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSE 606

Query: 298 MEKFYKRLLNS 308
            ++ Y  ++ S
Sbjct: 607 AKELYLNMITS 617


>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
 gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
          Length = 1139

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            II      G +++A+  +  +    L+PSL+ Y+++I  ++K G+  +A     ++K   
Sbjct: 867  IIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAG 926

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
              P    Y  ++  Y K  MY+      + MKL G  P  ++YN LI  +A AG   + E
Sbjct: 927  FQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAE 986

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                 M        S T + ++ AY + G  ++ E   +R+   +T      VR   EV 
Sbjct: 987  QLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERM---QTAAIRPTVRHYNEVM 1043

Query: 325  IKNYMFSR 332
            +    FSR
Sbjct: 1044 LA---FSR 1048



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 95   LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLC 150
            LQHD      H  A    +K   R  ++ +  D + ++     +  +  +++  +I +  
Sbjct: 856  LQHD------HIVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDT--MISVFA 907

Query: 151  EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
            + G   +A + F++++    +P  ++Y+ +++ Y+K G +  A      MK   L P   
Sbjct: 908  KSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEV 967

Query: 211  TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            +Y+ LI AY +   + + +  L  M   GC P  +T+ LLI  +A  G     E   + M
Sbjct: 968  SYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERM 1027

Query: 271  LT 272
             T
Sbjct: 1028 QT 1029



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA+  F+ M G    P   IYN ++H   K+G+++EA+     M+   L     +Y
Sbjct: 391 GRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSY 450

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             ++    K   ++        M++  C  D + Y  +I  +  AGL    E  ++ M  
Sbjct: 451 ATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNE 510

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            R+ +   T   + +  +  G  ++  +  + LL     L +   + L   Y+K
Sbjct: 511 LRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKTLLHCYVK 564



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 153 GLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           G +E A + F+ +   G A    L  YN ++  Y++     +A L   ++K  ++ P   
Sbjct: 566 GNVERATKTFKTLVESGIA---DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQV 622

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            +  +++ Y    M    +  L+ M+  G +PDHIT  +LI  +  A  ++   G    +
Sbjct: 623 WFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAG----L 678

Query: 271 LTKRMHLRSSTMVAILDAY--MNFGMLDKMEKFYKRLLNSRT 310
           L        S   AI   Y  + F + DK      R+L S T
Sbjct: 679 LEASAKEDESEAAAISRIYLCLKFRLFDKATLLLHRVLESFT 720



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 131/318 (41%), Gaps = 21/318 (6%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMM 235
           Y  +I  Y K+G+F EAL     M      P S  Y+ ++   GK   YDE +D+   M 
Sbjct: 380 YALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQ 439

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           + + C+  + +Y  ++     A   +     +  M  KR  +      +++  Y   G+ 
Sbjct: 440 RQELCTSKY-SYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLY 498

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD-LASRIGRTELVWCLR 354
           D+ EK ++ +   R  +       +A V +K   ++    + ++ LA  +   ++ W  +
Sbjct: 499 DEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAW--K 556

Query: 355 LLSHACLLSHRGIDSVVRE----MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            L H C +    ++   +     +ES     ++   N +L  Y +    +  ++L  +L 
Sbjct: 557 TLLH-CYVKAGNVERATKTFKTLVESGIA--DLMAYNDVLSLYAEFDMLEDAKLLFQQLK 613

Query: 411 TRHVKPDIVTIGI---LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           +  ++PD V  G    LY    +       L   +  GF   T +  T  +++  YG+ +
Sbjct: 614 SSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGF---TPDHITQGILINAYGEAN 670

Query: 468 FLRYCEEVYSSLEPYSRE 485
            +   EE    LE  ++E
Sbjct: 671 RI---EEAAGLLEASAKE 685



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 120/308 (38%), Gaps = 66/308 (21%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
            +++  ++E     +I +  + GL +EA + FQEM    L   ++ ++ + +   K GK+
Sbjct: 474 QMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKY 533

Query: 191 NEALLFLNEM--------------------KEMNLSPQSDTYDGLIQA------------ 218
           NEA+  + E+                    K  N+   + T+  L+++            
Sbjct: 534 NEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDVL 593

Query: 219 --YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y ++ M ++  +  + +K     PD + +  +++ +  A ++   E   + M  K   
Sbjct: 594 SLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFT 653

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
               T   +++AY   G  +++E+    L  S    KED                     
Sbjct: 654 PDHITQGILINAY---GEANRIEEAAGLLEAS---AKED--------------------- 686

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
            +  A+ I R  L    RL   A LL HR ++S    ++SA   +N  T N +    +  
Sbjct: 687 -ESEAAAISRIYLCLKFRLFDKATLLLHRVLESFT--LDSAA--YNQLTINFLKAGQVLP 741

Query: 397 KDFKHLRV 404
            +  H R+
Sbjct: 742 AEMLHSRM 749



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 56/298 (18%), Positives = 112/298 (37%), Gaps = 51/298 (17%)

Query: 170  LKPSLE----IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
            LKP L     +Y+S++       +  EA   + +M+++ L   S     L+ AY K    
Sbjct: 780  LKPELPRNNFVYSSMVGALINCNQLEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGEQ 839

Query: 226  DEIDMCLKMMKLDGCSPDH---ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                   +      C   H   + YN +I+     G LK+   TY S+    +     T 
Sbjct: 840  KIFSFSGRWYPAGYCCLQHDHIVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTY 899

Query: 283  VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD---- 338
              ++  +   G     EK +K L ++     E +  ++   Y K+ M+    DL +    
Sbjct: 900  DTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKL 959

Query: 339  --------------DLASRIGR------------------TELVWCLRLLSHACLLSHRG 366
                          D  +R G+                  + + + L + ++A    HRG
Sbjct: 960  RGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYA----HRG 1015

Query: 367  ----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                 ++ +  M++A +R  V   N ++LA+ + +  +       ++    ++PD+V+
Sbjct: 1016 KCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERSGIQPDVVS 1073



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/137 (18%), Positives = 57/137 (41%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS+ +Y+ ++  Y +  +   A     EM +  L P    +  +I  Y   +M+DE+   
Sbjct: 270 PSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTM 329

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M   G  P  +TY  ++     A  L      ++ ++ + + L       ++  Y  
Sbjct: 330 YEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRK 389

Query: 292 FGMLDKMEKFYKRLLNS 308
            G  ++  + ++ +L +
Sbjct: 390 LGRFEEALEVFEAMLGA 406


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 48/337 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF  + +I  LC EG    A+  F E  G  +KP++ +YN++I G S  G   EA    
Sbjct: 355 DEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLA 414

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM E  L P+  T++ L+    K     + D  +K+M   G  PD  T+N+LI  ++  
Sbjct: 415 SEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS-- 472

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKED 315
                              L+    + ILD  M+ G +D     Y  LLN   +T   ED
Sbjct: 473 -----------------TQLKMENALEILDVMMDNG-VDPDVYTYNSLLNGLCKTSKYED 514

Query: 316 LV---RKLAEVYIKNYMFS------------RLD---DLGDDLASRIGRTELVWCLRLLS 357
           ++   + + E      +F+            +LD    L +++ ++    + V    L+ 
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 358 HACLLSH-RGIDSVVREMESA-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
             C      G  ++ R+ME    V  +  T NII+ A+ +  +      L  E+  R + 
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634

Query: 416 PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
           PD  T  ++ D    GF  TG +++  +  FL + +E
Sbjct: 635 PDGYTYRLMVD----GFCKTGNVDLGYK--FLLEMME 665



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 122/344 (35%), Gaps = 38/344 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F     I  LC++G ++ AVR    +     KP +  YN +I+G  K  KF EA ++L
Sbjct: 250 NLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYL 309

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++    L P S TY+ LI  Y K  M    +  L     +G  PD  TY  LI      
Sbjct: 310 GKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHE 369

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G   R    +   L K +         ++    N G++ +  +    +       +    
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTF 429

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--------------LLS 363
             L     K    S  D L   + S+ G    ++   +L H                ++ 
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISK-GYFPDIFTFNILIHGYSTQLKMENALEILDVMM 488

Query: 364 HRGIDSVV-----------------------REMESAKVRWNVTTANIILLAYLKMKDFK 400
             G+D  V                       + M       N+ T NI+L +  +     
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLD 548

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
               LL E+  + V PD VT G L D      D  GA  +++++
Sbjct: 549 KALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKM 592



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ FN  K++ +LC++G ++E  +   ++    + P+L  YN  I G  + G+ + A+  
Sbjct: 216 LSTFN--KLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRM 273

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           +  + +    P   TY+ LI    K   + E ++ L  +  +G  PD  TYN LI  +  
Sbjct: 274 VGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCK 333

Query: 257 AGLLKRME 264
            G+++  E
Sbjct: 334 GGMVQLAE 341



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 18/353 (5%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLM 155
           D   T D +   IR +K+  R+ +      +  N+  +   +N      ++G   EE   
Sbjct: 139 DRGITPDVYSFTIR-MKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFK 197

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +E    F +M    +   L  +N ++H   K G   E    L+++ +  + P   TY+  
Sbjct: 198 DEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFF 257

Query: 216 IQAYGKYKMYDEIDMCLKMMK--LD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           IQ   +     E+D  ++M+   +D G  PD +TYN LI         +  E     ++ 
Sbjct: 258 IQGLCQ---KGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVN 314

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEK-FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           + +   S T   ++  Y   GM+   E+     + N   P  E   R L +        +
Sbjct: 315 EGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVP-DEFTYRSLIDGLCHEGETN 373

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKVRWNVTTAN 387
           R   L ++   +  +  ++    L+     LS++G+      +  EM    +   V T N
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKG---LSNQGLILEAAQLASEMSEKGLIPEVQTFN 430

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
           I++    KM        L+  + ++   PDI T  IL            ALE+
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 38/293 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G ++EAV  F+ M+ +  +P++  YN+I+      G F++A      M++  ++P   +
Sbjct: 89  KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYS 148

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           +   ++++ +          L  M   GC  + + Y  ++  F            +  ML
Sbjct: 149 FTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKML 208

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              + L  ST   +L      G + + EK   +++             L  ++  N+   
Sbjct: 209 ASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGV---------LPNLFTYNFFIQ 259

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            L   G+                 L  A  +  R ID           + +V T N ++ 
Sbjct: 260 GLCQKGE-----------------LDAAVRMVGRLIDQ--------GPKPDVVTYNYLIY 294

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
              K   F+   V L +L    ++PD  T    Y+    G+   G +++ +RI
Sbjct: 295 GLCKNSKFQEAEVYLGKLVNEGLEPDSFT----YNTLIAGYCKGGMVQLAERI 343


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 130/325 (40%), Gaps = 44/325 (13%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             I+  LC E  M+E      +M G  L+P++  Y +I+  + K G+   A   L  M  
Sbjct: 205 NAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVI 264

Query: 203 MNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              +P   T+  L++  +   +++D +DM  + M  +G +P  ++YN+LI+     G LK
Sbjct: 265 TGCTPNVVTFTALVRGLFDDGRVHDALDM-WRWMVAEGWAPSTVSYNILIRGLCSVGDLK 323

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
                  SM          T   ++D +   G L      +  +  SR+  K ++V    
Sbjct: 324 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM--SRSGCKPNVVVYTN 381

Query: 320 LAEVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSH 358
           + +V+ K  MF++   L D +                       R+GR   V+   +  H
Sbjct: 382 MVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVF-HEMRRH 440

Query: 359 ACLLSHRGIDSV----------------VREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            C+ + R  + +                V EM+S  +  ++ T N ++    + +  +  
Sbjct: 441 GCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREA 500

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
            V + ++  + ++P+  T   +  A
Sbjct: 501 MVFVGKMIVQGIQPNAFTFSAIIHA 525



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F A++R L +  R   +    DMW+ +  E    +  +   +I  LC  G ++ A     
Sbjct: 274 FTALVRGLFDDGR---VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILN 330

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME     P++  Y+++I G+SK G    A+   N+M      P    Y  ++  + K  
Sbjct: 331 SMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 390

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           M+++    +  M L+ C P+ +T+N LI+       + R  G +  M
Sbjct: 391 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEM 437



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N      +I  LC+   +  A+  F EM      P+   YN +IHG  + G   
Sbjct: 404 LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCG 463

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL  + EM+   +     TY+ ++    + +M  E  + +  M + G  P+  T++ +I
Sbjct: 464 DALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAII 523

Query: 252 QEF 254
             +
Sbjct: 524 HAY 526



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+  +  EA+    +M    ++P+   +++IIH Y K G+   A   L  M  +N
Sbjct: 487 VVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVN 546

Query: 205 LSPQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                  Y  L+ +   + K+ D +   LKM+  +G  P+ +T+N+L++
Sbjct: 547 CHRNILVYTILMAELCNQDKLVDAMTYLLKML-YEGIYPNTVTWNVLVR 594


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 2/181 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           VF+M     +  +  FN+  ++  LC EG + EA R  + M    ++P +  YN+++ G+
Sbjct: 511 VFEMLDQGIRLDVVVFNT--LMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGH 568

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
              G+ +EA   L+ M  + L P   TY+ L+  Y K +  D+    L+ M ++G +PD 
Sbjct: 569 CLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDV 628

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN ++      G     +  Y +M+  R      T   IL+       +D+  K ++ 
Sbjct: 629 VTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQS 688

Query: 305 L 305
           L
Sbjct: 689 L 689



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N     +++  LC+   ++EA       M  F   P++  YN+++ G+    +  EAL
Sbjct: 227 RVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEAL 286

Query: 195 LFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             L+ M +   ++  P   +Y+ +I  + +    D+       M   G  PD +TYN +I
Sbjct: 287 ELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVI 346

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                A ++ R +  ++ ML K +   + T   ++  Y++ G
Sbjct: 347 DGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTG 388



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 101 WTKDH--FWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEE 157
           W  +H  F  +++ L ++ R  +   +  +W+  E     N  +   ++   C E   EE
Sbjct: 226 WRVNHIVFNQLLKGLCDAKRLDEATNIL-LWRMPEFGCTPNVVSYNTLVKGFCNENRAEE 284

Query: 158 AVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           A+     M   +G +  P +  YN++I+G+ + G+ ++A     +M +  + P   TY+ 
Sbjct: 285 ALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNT 344

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +I    K ++ D      + M   G  P + TYN LI  +   G
Sbjct: 345 VIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTG 388



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 120/321 (37%), Gaps = 45/321 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I     EG +++A   F +M    + P +  YN++I G  K    + A     +M +  
Sbjct: 310 VINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKG 369

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY+ LI  Y     + E+   L+ M      PD   Y LL+      G      
Sbjct: 370 VKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEAR 429

Query: 265 GTYKSMLTK------------------RMHLRSSTMV---AILDAYMNFGMLDKMEKFYK 303
             + S++ K                  R    S  +V   A++DA    G +D     + 
Sbjct: 430 NIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFN 489

Query: 304 RLLNSRTPL--------KEDLVRKL------AEVYIKNYMFSRLDDLGD--------DLA 341
           +++N    L         E+LV ++       +V + N +   L   G         +L 
Sbjct: 490 QMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELM 549

Query: 342 SRIG-RTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            R+G R +++    L+   CL         ++  M S  ++ N  T N +L  Y K +  
Sbjct: 550 LRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRI 609

Query: 400 KHLRVLLSELPTRHVKPDIVT 420
                LL E+      PD+VT
Sbjct: 610 DDAYSLLREMLMNGPTPDVVT 630



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +++ N+  SR   + +    I+  LC+   ++EA + FQ +    L+  +  +N +I   
Sbjct: 649 ELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGAL 708

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K GK  +A+     +    L P  +TY  + +   K    +E+ +    M+ +G +P+ 
Sbjct: 709 LKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNS 768

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAY 289
              N L++ F   G + R  G Y S L  K   L +ST   ++  Y
Sbjct: 769 RMLNALVRRFLHRGDISR-AGAYLSKLDEKNFSLEASTASMLISLY 813



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 29/199 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFAL---------------------KPSL 174
           N  N   +I  LC+ G +++A+  F +M  E + L                     +  +
Sbjct: 464 NVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDV 523

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            ++N+++    + G+  EA   +  M  + + P   +Y+ L+  +      DE    L +
Sbjct: 524 VVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDV 583

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV---AILDAYMN 291
           M   G  P+  TYN L+  +  A   +R++  Y  +    M+  +  +V    IL     
Sbjct: 584 MVSIGLKPNEFTYNTLLHGYCKA---RRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQ 640

Query: 292 FGMLDKMEKFYKRLLNSRT 310
            G   + ++ Y  ++NSRT
Sbjct: 641 TGRFSEAKELYLNMINSRT 659



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + R+ +  ++ D+  +I   + NEF    ++   C+   +++A    +EM      P + 
Sbjct: 571 TGRTDEAAKLLDVMVSI-GLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVV 629

Query: 176 IYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSD--TYDGLIQAYGKYKMYDEIDMCL 232
            YN+I+HG  + G+F+EA  L+LN    +N   Q D  TY+ ++    K    DE     
Sbjct: 630 TYNTILHGLFQTGRFSEAKELYLN---MINSRTQWDMYTYNIILNGLCKNNCVDEAFKMF 686

Query: 233 KMMKLDGCSPDHITYNLLI 251
           + +   G     IT+N++I
Sbjct: 687 QSLCSKGLQLHIITFNIMI 705



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 149/386 (38%), Gaps = 39/386 (10%)

Query: 74  HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD------ 127
            Q L+  ++  N   +C +      G W +     V+R L+  S     P  F       
Sbjct: 363 QQMLDKGVKPSNGTYNCLIHGYLSTGKWKE-----VVRLLEEMSTHDLEPDCFIYALLLD 417

Query: 128 -MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
            + KN   +         I   +  + +++EAV  F +M    L P++  Y ++I    K
Sbjct: 418 YLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCK 477

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG--KYKMYDEIDMCLKMMKLDGCSPDH 244
           +G+ ++A+L  N+M              + + YG    + +++ +  +  M   G   D 
Sbjct: 478 LGRVDDAILKFNQM--------------INEVYGLCTVEKWEKAEELVFEMLDQGIRLDV 523

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFY 302
           + +N L+ +    G  + ME      L  R+ +R   +    ++D +   G  D+  K  
Sbjct: 524 VVFNTLMCDLCREG--RVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLL 581

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI--GRTELVWCLRLLSHAC 360
             +++      E     L   Y K     R+DD    L   +  G T  V     + H  
Sbjct: 582 DVMVSIGLKPNEFTYNTLLHGYCKA---RRIDDAYSLLREMLMNGPTPDVVTYNTILHGL 638

Query: 361 LLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             + R  ++  +   M +++ +W++ T NIIL    K         +   L ++ ++  I
Sbjct: 639 FQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHI 698

Query: 419 VTIGILYDARRIGFDGTGALEMWKRI 444
           +T  I+  A   G     A++++  I
Sbjct: 699 ITFNIMIGALLKGGKKEDAMDLFATI 724


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 1/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +  AVR  +EME     P++  Y  ++H + K G +++    L EM    L+  
Sbjct: 356 LCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           S  Y+G+I A  K    DE    ++ M+  GC+PD  +YN +I        ++  E  ++
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           ++L + +     T   I+ A +  G      +  K ++     L       L +   K+ 
Sbjct: 476 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 535

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              R   L +++A +  +   V    L+S  C     R    + ++M +  +  ++ T N
Sbjct: 536 NVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYN 595

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    KM        LL +L   +V PDI+T  IL
Sbjct: 596 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 632



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 4/199 (2%)

Query: 119 SRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           + Q+ +   M++N+  E    N      II  L  +G  ++AVR  +EM        +  
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMM 235
           YN +I    K G  + +L+ L EM E  + P + +Y+ LI    K  ++ D +++  +M+
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +PD +TYN LI      G +       + +  + +H    T   ++  +    +L
Sbjct: 584 N-QGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLL 642

Query: 296 DKMEKFYKRLLNSRTPLKE 314
           D       R + +  P+ +
Sbjct: 643 DDAAMLLNRAMAAVCPVGD 661



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 98/266 (36%), Gaps = 42/266 (15%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G   EA+   + M      P   +Y ++IH     G   EA   LNEM  M  +  
Sbjct: 185 LCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK-RMEGTY 267
            +T+D +++         E    +  M   GC P  +TY  L+Q     GL + R     
Sbjct: 245 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQ-----GLCRVRQADEA 299

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIK 326
           ++ML +   L       ++   +  G L +  + Y+ + L    P          + +  
Sbjct: 300 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQP----------DAHTY 349

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
           + +   L  LG     RI        +RLL               REME      NV T 
Sbjct: 350 SILMHGLCKLG-----RISSA-----VRLL---------------REMEKKGFAPNVVTY 384

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTR 412
            I+L ++ K   +   R LL E+  +
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEEMSAK 410



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 31/194 (15%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q +I  LC++G + EA     EM        +  ++ ++ G   +G+  EA   ++ M  
Sbjct: 214 QTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMT 273

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDE-------------------IDMCL----------- 232
               P   TY  L+Q   + +  DE                   I  CL           
Sbjct: 274 KGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATEL 333

Query: 233 -KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M L GC PD  TY++L+      G +       + M  K       T   +L ++  
Sbjct: 334 YETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCK 393

Query: 292 FGMLDKMEKFYKRL 305
            GM D      + +
Sbjct: 394 NGMWDDTRALLEEM 407


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++ A ++ +E+    + P +  Y+ +I+ +++ G+F+ +L  L +M+   + P 
Sbjct: 274 LCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD 333

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI    K + + +    L++M+  G  P+ +TYN ++     +G +  +   Y+
Sbjct: 334 VVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYE 393

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
            ML  R      T   I++     GMLD   K ++ + +SR
Sbjct: 394 MMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSR 434



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 19/292 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G+  +A+   +E+ G    P++ IYN II G  +  +  +A   L +M E +
Sbjct: 60  VVDGLCGAGMANQALELVRELSGV-YTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEES 118

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           + P   TY    +GL ++  K K+  E+    + MK +GC P+ ITY  LIQ  + AG  
Sbjct: 119 IVPNVFTYTILLNGLCRS-NKTKLAREV---FQEMKRNGCKPNPITYGTLIQHLSRAG-- 172

Query: 261 KRMEGTYKSMLTKR-MHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++   + M+ +R + L +   T   I+        LD   KF + +        E   
Sbjct: 173 -EIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTY 231

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRT-ELVWCLRLLSHACLLSH--RGIDSVVREM 374
             L   + ++    R+    ++  +R G + E       L   C   +  R   S V E+
Sbjct: 232 SNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKS-VEEL 290

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             + V  +V T ++++  + +   F     LL ++    VKPD+VT   L +
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLIN 342



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +N  K  +  +++  +I +LC+E   ++A R  + ME     P++  YNS++ G  K
Sbjct: 324 DMRRNGVKPDVVTYST--LINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCK 381

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            GK +E       M +   SP   TY  ++    K  M D      +++K     PD   
Sbjct: 382 SGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAA 441

Query: 247 YNLLIQEFACAGLLKRMEGTYKSM 270
           Y+++I     AG L+   G Y  M
Sbjct: 442 YSMVITSLCRAGKLEEACGMYHGM 465



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 13/356 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I  L  +SR     +V +  K +E+S + N F    ++  LC     + A   FQE
Sbjct: 91  YNGIITGLCRASRVMDAYKVLE--KMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQE 148

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+    KP+   Y ++I   S+ G+ +EAL  + E + + L     T   ++    K   
Sbjct: 149 MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASR 208

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMV 283
            D+    ++ M+  G  P+ +TY+ L+  F   G L R+   ++    ++   L ++   
Sbjct: 209 LDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
             LDA    G LD+  K  + L  S           L   + +   F    +L +D+   
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFK 400
             + ++V    L++  C    R      R    ME+A    NV T N ++    K     
Sbjct: 329 GVKPDVVTYSTLINVLC--KERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMD 386

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
            +  +   +      PD+VT  I+ +    G    G L+   ++  L K+     D
Sbjct: 387 EVHRVYEMMLKSRCSPDVVTYSIIMN----GLSKAGMLDSAVKLFELIKSSREGPD 438


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Vitis vinifera]
          Length = 1071

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 4/199 (2%)

Query: 117  SRSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
             R R++ +  +M+     S +    +E     +I    + G   EA   F+EM+   +KP
Sbjct: 825  GRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKP 884

Query: 173  SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
                YN +I+ Y+  G  +EA      M     SP S TY  LI+AY +   + E +  +
Sbjct: 885  GKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETI 944

Query: 233  KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
              M+ +G  P  + +N L+  FA AG  +  E  Y ++L+  +    +    +L  Y+++
Sbjct: 945  MSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDY 1004

Query: 293  GMLDKMEKFYKRLLNSRTP 311
            G ++K   F++++  S  P
Sbjct: 1005 GCVEKGITFFEQIRESVEP 1023



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 3/193 (1%)

Query: 108 AVIRFLKNSSRSRQI-PQVFDMWKN-IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           AV  F+ +S + + +  +V D+W+  ++K  + N F    +I  L ++GL+EE+ + F E
Sbjct: 263 AVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYE 322

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+     P    Y+ +I   SK G  +EA+    +M+   + P + T   L+  Y K   
Sbjct: 323 MKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGD 382

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           Y         M+ +    D + Y LLI+ +   GL +  E T+K      +     T +A
Sbjct: 383 YSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIA 442

Query: 285 ILDAYMNFGMLDK 297
           +   ++N G  +K
Sbjct: 443 MAQVHLNSGNFEK 455



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 76/393 (19%), Positives = 165/393 (41%), Gaps = 21/393 (5%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           SS++    +   +++++   RI  + +    ++ +  + G    AV  F EME   +   
Sbjct: 342 SSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVAD 401

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
             IY  +I  Y K+G + +A     E +++ L     TY  + Q +     +++    ++
Sbjct: 402 EVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIME 461

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           +M+         +Y +L+Q +     L   E T+++ L+K     + +   +L+ Y+   
Sbjct: 462 LMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQA-LSKTGLPDAGSCNDMLNLYIKLD 520

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR--IGRTELVW 351
           +L+K + F  ++         +L + + +VY K  M      L  ++ +      +E + 
Sbjct: 521 LLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQ 580

Query: 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF----KHLRVLLS 407
            L L+ H        +D  V  +     + N     ++L  Y ++ +     + L++LL 
Sbjct: 581 TLSLVMHEESERPDYVDDTVEALN----QNNTLALELMLGLYSEVGNACKVEEILKMLLK 636

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
                 V   +++        R G D + A  +  ++  L +  E  +   ++ +YGK H
Sbjct: 637 TAGGLSVASHLIS-----KFTREG-DISKAQNLNDQLVKLGRGAEDASIASLITLYGKQH 690

Query: 468 FLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
            L+   EV+S++E  +  K    Y ++ID   K
Sbjct: 691 KLKKAIEVFSAIEGCTSGK--LIYISMIDAYAK 721



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 38/194 (19%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  L   G  +EA    +      L+     YN+ I+     G+ + A    + M  +
Sbjct: 749 KVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSL 808

Query: 204 NLSPQSDTYDGLIQAYGKYKMYD------------------------------------- 226
            ++P   TY+ +I  YG+ +  D                                     
Sbjct: 809 GVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSH 868

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E  +  + M+ +G  P  ++YN++I  +A AGL    +  +++ML       S T +A++
Sbjct: 869 EASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALI 928

Query: 287 DAY-MNFGMLDKME 299
            AY  +F  L+  E
Sbjct: 929 RAYTQSFKFLEAEE 942



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 2/150 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+  F  +EG        IY S+I  Y+K GK  EA     E+    +     +   
Sbjct: 692 LKKAIEVFSAIEG--CTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISK 749

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ A   Y  + E +  ++    DG   D + YN  I     AG L      Y  M++  
Sbjct: 750 VVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLG 809

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +     T   ++  Y     LDK  + + +
Sbjct: 810 VAPSIQTYNTMISVYGRGRKLDKAVEMFNK 839



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/263 (18%), Positives = 108/263 (41%), Gaps = 1/263 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A +AF EM     +P      +++  Y++ G+    L F + ++E  + P    +
Sbjct: 206 GKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVF 265

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + ++ +  K  ++ ++    + M   G  P+  TY ++I      GL++    T+  M  
Sbjct: 266 NFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEMKN 325

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
                   T   ++      G  D+  K Y+ +   R          L  +Y KN  +SR
Sbjct: 326 LGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSR 385

Query: 333 LDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
              L  ++  ++I   E+++ L +  +  L  +   +   +E E   +  N  T   +  
Sbjct: 386 AVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQ 445

Query: 392 AYLKMKDFKHLRVLLSELPTRHV 414
            +L   +F+    ++  + +R++
Sbjct: 446 VHLNSGNFEKALTIMELMRSRNI 468


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 117 SRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R +Q+  + D+++ +++     + F    +I      G ++ AV+ F+E+E    +P +
Sbjct: 441 GRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDV 500

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YNS+I+   K G  +EA +   EM+E  L+P   TY  LI+ +GK    D+++M   +
Sbjct: 501 ISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKT---DKVEMACSL 557

Query: 235 ---MKLDGCSPDHITYNLLI 251
              M  +GCSP+ +TYN+L+
Sbjct: 558 FDEMIAEGCSPNLVTYNILL 577



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I  Y + G+ + A+    E++  N  P   +Y+ LI   GK
Sbjct: 453 YEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGK 512

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               DE  M  K M+  G +PD +TY+ LI+ F 
Sbjct: 513 NGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFG 546



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/370 (18%), Positives = 152/370 (41%), Gaps = 51/370 (13%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L+   R R   + F ++ ++ +    ++ F    ++  L ++  +++A + F++M+   
Sbjct: 194 LLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRH 253

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +P    Y  +I    K GK +E+L     M E   +     Y+ +I+A  K +M D+  
Sbjct: 254 CEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAV 313

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAIL 286
           +    M  +GC P+  TY++L+      G L +++      K  + K+++      ++ L
Sbjct: 314 LLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKL 373

Query: 287 ----------------------DAYMNF-----------GMLDKMEKFYKRLLNSRTPLK 313
                                 DAYM+              +D + +F+++ + + T + 
Sbjct: 374 GHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMY 433

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR- 372
             +   L  +   +++    + +  D     G    ++   +L  +   + R +DS V+ 
Sbjct: 434 NTVFTALGRLKQVSHIHDLYEKMKQD-----GPPPDIFTYNILISSYGRAGR-VDSAVKI 487

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
             E+E++  + +V + N ++    K  D     +   E+  + + PD+VT   L +    
Sbjct: 488 FEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIEC--- 544

Query: 431 GFDGTGALEM 440
            F  T  +EM
Sbjct: 545 -FGKTDKVEM 553



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 110 IRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +R L     S +  ++F +MW   +K   + + S  ++  LC  G + EA+         
Sbjct: 367 VRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMS--MLESLCSSGKIAEAIDLLNRFHEK 424

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +     +YN++     ++ + +       +MK+    P   TY+ LI +YG+    D  
Sbjct: 425 CITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSA 484

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               + ++   C PD I+YN LI      G +      +K M  K ++    T   +++ 
Sbjct: 485 VKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIEC 544

Query: 289 YMNFGMLDKME 299
              FG  DK+E
Sbjct: 545 ---FGKTDKVE 552



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L  SS   +  Q   +  ++EK  +    S   + +L   G   +  R    ++ + L+ 
Sbjct: 131 LSRSSSQLRFEQTESLLDDMEKRGVK--GSISTVNILI--GFFGDLDRCVGLVKKWGLRF 186

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           +   Y  ++ GY ++   ++A     +M     S     ++ L+ A  K +  D+     
Sbjct: 187 NAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVF 246

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + MK   C PD  TY ++I+    AG        +++ML K   L       +++A    
Sbjct: 247 EDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKG 306

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
            M DK    + +++ +     E     L  V +     ++LD++
Sbjct: 307 RMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNI 350


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 138/332 (41%), Gaps = 11/332 (3%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           +H   V+   + SS S     +F+        K R +      + G  C  G +E    A
Sbjct: 53  NHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAA 112

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDGLIQAYG 220
           F  +     + +  + N +++G     + +EA+ + L  M E    P   + + L++   
Sbjct: 113 FGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLC 172

Query: 221 KYKMYDEIDMCLKMMKLDG---CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             K  +E    L  M  DG   C+P+ +TYN +I     A  + R EG  + M+ K + L
Sbjct: 173 NEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKL 232

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDD 335
              T   I+D       +D+ E   + +++    +K D+V    + +   K     R + 
Sbjct: 233 DVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK--GVKPDVVTYNTIIDGLCKAQAVDRAEG 290

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYL 394
           +   +  +  + ++V    ++   C        D V++ M    V+ ++ T N ++  YL
Sbjct: 291 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYL 350

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              ++K +   L E+  R + PD+VT  +L D
Sbjct: 351 STGEWKEVVRRLEEMYARGLDPDVVTYSLLLD 382



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 127/329 (38%), Gaps = 39/329 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME---GFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           N  +   ++  LC E  +EEA+     M    G    P++  YN+II G  K    + A 
Sbjct: 160 NVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAE 219

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             L  M +  +     TY  +I    K +  D  +  L+ M   G  PD +TYN +I   
Sbjct: 220 GVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 279

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS------ 308
             A  + R EG  + M+ K +     T   I+D       +D+ +   + +++       
Sbjct: 280 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDI 339

Query: 309 -----------RTPLKEDLVRKLAEVYIKN-----YMFSRLDDL----GDDLASR----- 343
                       T   +++VR+L E+Y +        +S L D     G    +R     
Sbjct: 340 QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYC 399

Query: 344 -----IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                I     ++ + L  +A   +   +  ++  M +  +  N    NI+L AY K   
Sbjct: 400 MIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAM 459

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                 + S +    + PD+VT GIL DA
Sbjct: 460 IDEAMHIFSRMSQHGLSPDVVTYGILIDA 488



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 2/180 (1%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+MW    +  +  FN+  I+  LC EG +  A R    ME   ++P++  YN++I G+ 
Sbjct: 538 FEMWDQGVRPNVVFFNT--IMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHC 595

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             G+ +EA   L+ M  + L P   +YD L++ Y K    D      + M   G +P  +
Sbjct: 596 LAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAV 655

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TY+ ++Q           +  Y +M+         T   IL+       +D+  K ++ L
Sbjct: 656 TYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSL 715



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 117/296 (39%), Gaps = 48/296 (16%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA + F  M    +KP++ IY  ++HGY+  G   +    L+ M    +SP 
Sbjct: 384 LCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPN 443

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           +  ++ ++ AY K  M DE       M   G SPD +TY +LI                 
Sbjct: 444 NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILI----------------- 486

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
                             DA    G +D     + +++N        +   L        
Sbjct: 487 ------------------DALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVD 528

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNV 383
            + + ++L  ++  +  R  +V+   ++ + C     +++ R IDS    ME   VR NV
Sbjct: 529 RWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDS----MERVGVRPNV 584

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            + N ++  +           LL  + +  +KPD+++    YD    G+  TG ++
Sbjct: 585 ISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLIS----YDTLLRGYCKTGRID 636



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N  +   +IG  C  G  +EA +    M    LKP L  Y++++ GY K G+ + A  
Sbjct: 581 RPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYC 640

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEF 254
              EM    ++P + TY  ++Q     + + E  ++ L M+K  G   D  TYN+++   
Sbjct: 641 LFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIK-SGQQWDIYTYNIILNGL 699

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                +      ++S+ +K +     T   ++D     G
Sbjct: 700 CKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGG 738



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/314 (18%), Positives = 130/314 (41%), Gaps = 39/314 (12%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++ +++EA+  F  M    L P +  Y  +I    K+G+ ++A+L  N+M    ++P S 
Sbjct: 456 KKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSV 515

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            ++ L+        +++ +     M   G  P+ + +N ++      G +   +    SM
Sbjct: 516 VFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM 575

Query: 271 LTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
             +R+ +R + +    ++  +   G  D+  +    +++    LK DL+    +  ++ Y
Sbjct: 576 --ERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS--VGLKPDLISY--DTLLRGY 629

Query: 329 MFSRLDDLGDDLASRIGRTELVWCL-----------RLLSHACLLS---HRGIDSVVRE- 373
                         + GR +  +CL             ++++ +L    H    S  +E 
Sbjct: 630 -------------CKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKEL 676

Query: 374 ---MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
              M  +  +W++ T NIIL    K         +   L ++ ++P+I+T  I+ D    
Sbjct: 677 YLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFK 736

Query: 431 GFDGTGALEMWKRI 444
           G     A++++  I
Sbjct: 737 GGRKKDAMDLFASI 750



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 119 SRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           +R+  +  +++ N+ KS  + + +    I+  LC+   ++EA + FQ +    L+P++  
Sbjct: 667 TRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIIT 726

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +  +I    K G+  +A+     +    L P   TY  +++   +  + DE D     M+
Sbjct: 727 FTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAME 786

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSST 281
             GC+PD +  N +I+     G + R  G Y S + +    L +ST
Sbjct: 787 KSGCTPDSVMLNAIIRSLLGRGEIMR-AGAYLSKIDEMNFSLEAST 831



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 2/169 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++  LC     E+A   F EM    ++P++  +N+I+      G+   A   ++ 
Sbjct: 517 FNS--LVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDS 574

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+ + + P   +Y+ LI  +      DE    L +M   G  PD I+Y+ L++ +   G 
Sbjct: 575 MERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGR 634

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +      ++ ML K +   + T   IL    +     + ++ Y  ++ S
Sbjct: 635 IDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKS 683


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 30/399 (7%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           W  +  L +    +  P     +  + K  IN              G  + A   F +M+
Sbjct: 40  WVALEILVDEMIGKNCPPDIKFYALVIKEAINT-------------GRFQTAQHWFSKMK 86

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
                P + IYN +I  Y K G F++A+ + +++K+  L P S TY  ++ A  K    D
Sbjct: 87  LLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNID 146

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           + +  LK M+  G  PD + Y++LI  F  AG  +    T++ +        S     ++
Sbjct: 147 KGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLI 206

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG---DDLASR 343
            A+   GM+D+    +K    S       +   + +VY K    +R+ D       L   
Sbjct: 207 HAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAK----ARMADQALHVLKLMKE 262

Query: 344 IG--RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           IG    EL +   L +        G   +  EM+ +  R+  +T   +L  Y K      
Sbjct: 263 IGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSA 322

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV-- 459
              LL+++     + ++V    L D     +   G L+   R+    K      + +V  
Sbjct: 323 AEELLAKMRQLGFRRNVVAYSTLIDM----YGKVGKLQEATRLFSTMKQQGCKGNLIVYN 378

Query: 460 --LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             L +YGK   +   E + + L+         TY  LI+
Sbjct: 379 TMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLIN 417



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      +I M  + G ++EA R F  M+    K +L +YN+++  Y K G+ N+A  
Sbjct: 336 RRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAER 395

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + E+K+  L P + TY  LI AY +   ++E     +  + DG   D I   ++I  + 
Sbjct: 396 LMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYG 455

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            A    ++    + M    +   +  +  +++ Y + GM +   +  ++ +N   PL+ +
Sbjct: 456 KARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLRK-INELGPLEGN 514

Query: 316 LVRK 319
            + K
Sbjct: 515 TLHK 518



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 1/231 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F+ +I+    +  + Q   V  + K I   + NE     ++           A++ F+EM
Sbjct: 237 FYTMIQVYAKARMADQALHVLKLMKEI-GLQPNELGYGSVLNAFMRANQPMGAIKLFEEM 295

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +    +     Y ++++ YSK G  + A   L +M+++        Y  LI  YGK    
Sbjct: 296 QESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKL 355

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E       MK  GC  + I YN ++  +  AG +   E     +   ++   + T   +
Sbjct: 356 QEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTL 415

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
           ++AY   G  ++  + +++       L   LV  +  VY K   +S+L +L
Sbjct: 416 INAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAEL 466


>gi|440577310|emb|CCI55317.1| PH01B001I13.13 [Phyllostachys edulis]
          Length = 636

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+RA+ ++     +P    Y S+I+ Y ++G+ + A    +EM +         Y  
Sbjct: 377 LKPAIRAYDKLVALGCEPGQVTYASVINVYCRLGRSDRAESIFSEMIDRGYDKCVVAYGN 436

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  YGK +   +    L +MK  GC P+   YN L+      G  ++ E  +K M+ + 
Sbjct: 437 MISMYGKIRRASDAMRLLALMKQKGCEPNVWVYNSLLDMHGRLGDSRQAEKIWKEMMRRT 496

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     +  AI+ A+   G LD+    Y+    +   + + L   +A V+ K   F+ L 
Sbjct: 497 VQPDRVSYTAIISAFNRSGELDRCMDLYQEFRETGGKVDKALAGLMAGVFSKCSRFNELI 556

Query: 335 DLGDDL 340
           DL  D+
Sbjct: 557 DLLKDM 562



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I + C  G  + A   F EM        +  Y ++I  Y KI + ++A+  L  MK+  
Sbjct: 402 VINVYCRLGRSDRAESIFSEMIDRGYDKCVVAYGNMISMYGKIRRASDAMRLLALMKQKG 461

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ L+  +G+     + +   K M      PD ++Y  +I  F  +G L R  
Sbjct: 462 CEPNVWVYNSLLDMHGRLGDSRQAEKIWKEMMRRTVQPDRVSYTAIISAFNRSGELDRCM 521

Query: 265 GTYK 268
             Y+
Sbjct: 522 DLYQ 525



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 3/142 (2%)

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS---DTYDGL 215
           V  ++ M G  L P+ E Y++++  Y  +G+ +       + K     P     +TY  +
Sbjct: 203 VLVYERMRGARLPPNAEAYHAVMAAYGALGEPDVVASLFKQYKSRKWYPSESCLETYTIV 262

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
               G+     +   CL+ M+ DG SP+   Y+  I   A A      E  Y     K M
Sbjct: 263 CDTLGREGRALDALKCLREMEADGISPNATIYSSAIGSLADARETAAAEDLYHEARKKEM 322

Query: 276 HLRSSTMVAILDAYMNFGMLDK 297
                  + ++  ++  G+++K
Sbjct: 323 LGDPDMFLKVIVMHVETGLVEK 344


>gi|3258568|gb|AAC24378.1| Unknown protein [Arabidopsis thaliana]
          Length = 691

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 22/248 (8%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F +++  L    R+     +FD  +       + +    +I   C+  +++EA R F++M
Sbjct: 176 FNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDM 235

Query: 166 E------------------GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           E                     + P++  Y +++ GY    + +EA+L  ++M    L P
Sbjct: 236 ELAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKP 295

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCL--KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            + TY+ LI+   +   YDEI   L          +PD  T+N+LI+    AG L     
Sbjct: 296 NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMK 355

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            ++ ML  ++H  S++   ++         D+ E  +  L      L +D  + LA  Y 
Sbjct: 356 VFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAY- 414

Query: 326 KNYMFSRL 333
            N MF  L
Sbjct: 415 -NPMFEYL 421



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  +I      GL +E+V+ FQ M+   + PS+  +NS++    K G+   A    +E
Sbjct: 141 FNS--LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198

Query: 200 MKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M+    ++P S T++ LI  + K  M DE     K M+L G     I +N+L      +G
Sbjct: 199 MRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELAG--KVKIAHNVL------SG 250

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           +LK+    + ++++    +R   M   +D
Sbjct: 251 MLKKATDVHPNVVSYTTLVRGYCMKQEID 279


>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
 gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 36/306 (11%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  QVF+M K     +  E    K++ +L   G  + A + F EM    ++P+ E+Y ++
Sbjct: 69  QAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTAL 128

Query: 181 IHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y +    +E    +N+MK +    P   TY  L++A      ++ ID   + M    
Sbjct: 129 LAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERL 188

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKM 298
            SP+ +T N+++  +   G+  +ME     ML +        TM  IL  + N G +D M
Sbjct: 189 ISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLM 248

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           E++Y++  N     +      L   Y K  M+ ++                         
Sbjct: 249 ERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM------------------------- 283

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N ++ A+  + D K++     ++    +K D 
Sbjct: 284 ---------SSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQMRAESMKADT 334

Query: 419 VTIGIL 424
            T   L
Sbjct: 335 KTFCCL 340



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 153 GLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           G+ ++  R   EM E  A KP +   N I+  +   G+ +    +  + +   + P++ T
Sbjct: 207 GMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEPETRT 266

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           ++ LI AYGK +MYD++   ++ M+         TYN +I+ FA  G  K ME  +  M 
Sbjct: 267 FNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQMR 326

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKM 298
            + M   + T   +++ Y N G+  K+
Sbjct: 327 AESMKADTKTFCCLINGYANAGLFHKV 353



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 83/189 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+ +   EG ++   R +++   F ++P    +N +I  Y K   +++    +  M+++ 
Sbjct: 235 ILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQ 294

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+        ++     M+ +    D  T+  LI  +A AGL  ++ 
Sbjct: 295 FPWTTSTYNNVIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVI 354

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            + +      +   +S   A++ A      L +ME+ +KR+ + + P        + E Y
Sbjct: 355 SSVQLAAKFEIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAY 414

Query: 325 IKNYMFSRL 333
            K  M  ++
Sbjct: 415 RKEGMNDKI 423



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 350 VWCLRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           V+    L  AC+ + R   ID++ +EM+   +  N  T N++L  Y ++  +  +  +LS
Sbjct: 158 VYTYSTLLKACVDASRFELIDTLYQEMDERLISPNTVTQNVVLSGYGRVGMYDQMERVLS 217

Query: 408 E-LPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAV 462
           E L +   KPD+ T+ I+       F   G +++ +R    F+      E  T  +++  
Sbjct: 218 EMLESAACKPDVWTMNIILSV----FGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGA 273

Query: 463 YGKGHFLRYCEEVYSSLEPYSREKKRW---TYQNLIDLVIK-HNGKNLDGTF 510
           YGK    R  +++ S +E   + +  W   TY N+I+      + KN++  F
Sbjct: 274 YGKK---RMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAF 322


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 158 AVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           A RA + +E  A++   P +  YNS+++  SK GK+ +  L +  +    + P + TY+ 
Sbjct: 286 AARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNT 345

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI +   +  +DE+D  LK+M      P H+TYN+L+     +GLL R    Y +M+T+ 
Sbjct: 346 LIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTEN 405

Query: 275 MHLRSSTMVAILDAYMNFGMLDK 297
                 T   +L      G +D+
Sbjct: 406 CSPDIITYNTLLSGLCKEGFIDE 428



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 113/279 (40%), Gaps = 5/279 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC+ G +  A+   ++M      P    YNSII      G FN+A+ F  +     
Sbjct: 206 VIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKG 265

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI+   KY         L+ M ++GC PD +TYN L+   +  G  +   
Sbjct: 266 CPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTA 325

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               ++L+  M   + T   ++ + +N G  D+++   K +  + +P        L    
Sbjct: 326 LVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGL 385

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRW 381
            K+ +  R       + +     +++    LLS  C      ID  ++ +          
Sbjct: 386 CKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLC--KEGFIDEGIQLLNLLVGTSCSP 443

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            + T NI++    ++   +  + L  E+  + + PD +T
Sbjct: 444 GLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEIT 482



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L   G  +E     + M   +  P+   YN +++G  K G  + A+ F 
Sbjct: 339 NAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFY 398

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M   N SP   TY+ L+    K    DE    L ++    CSP  +TYN++I   A  
Sbjct: 399 STMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARL 458

Query: 258 GLLKRMEGTYKSMLTK 273
           G ++  +  Y  M+ K
Sbjct: 459 GSMESAKELYDEMVDK 474



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E  + +I+  LC  G +  A R    M   +  P      ++I G+ + G  +EA   L
Sbjct: 129 DEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTL 188

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           N+M      P + TY+ +I    K  ++   +D+ ++ M L GCSPD ITYN +I+
Sbjct: 189 NKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDL-VEDMSLSGCSPDAITYNSIIR 243



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 35/162 (21%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG ++E ++    + G +  P L  YN +I G +++G    A    +EM +  
Sbjct: 416 LLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKG 475

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE--------------------------------IDMCL 232
           + P   T+  L   + +    +E                                +D+ +
Sbjct: 476 IIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAI 535

Query: 233 KMMKL---DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           +++ L     C+PD   Y+ LI+  A  G+LK     +++++
Sbjct: 536 QVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLI 577



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ GL++ A+  +  M      P +  YN+++ G  K G  +E +  LN +   + SP 
Sbjct: 385 LCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPG 444

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ +I    +    +        M   G  PD IT++ L   F  A  L+      K
Sbjct: 445 LVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLK 504

Query: 269 SMLTKRMHLRSSTMVAIL 286
            M  K   ++++    ++
Sbjct: 505 EMSMKEQRIKNTAYRCVI 522



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 101/283 (35%), Gaps = 36/283 (12%)

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N I+      GK   A   ++ M   +  P   +   LI+ + +  + DE    L  M +
Sbjct: 134 NEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVM 193

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  PD ITYN++I      G L+      + M        + T  +I+    + G  ++
Sbjct: 194 SGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQ 253

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA---------------- 341
              F++  L    P        L E+  K    +R  ++ +D+A                
Sbjct: 254 AVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVN 313

Query: 342 --SRIGRTE--LVWCLRLLSHA-------------CLLSH---RGIDSVVREMESAKVRW 381
             S+ G+ E   +  L LLSH               L++H     +D +++ M       
Sbjct: 314 LTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPP 373

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              T NI+L    K           S + T +  PDI+T   L
Sbjct: 374 THVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTL 416


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 123/322 (38%), Gaps = 44/322 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I G L ++  ++ A+R  + M+    KP   +YN +++G    G+   A   L++MK+  
Sbjct: 24  IHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDK 83

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +S    TY  LI+ Y       +     + MK  G SP+  TYN LIQ +   GL K   
Sbjct: 84  VSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEAL 143

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y  M          T    +  Y   G+L+ ME+    +     P  +     L +VY
Sbjct: 144 ELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVY 203

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            K   F +  +                                  ++REM  A  R N+ 
Sbjct: 204 AKKSYFVKAHE----------------------------------ILREMTEAGYRPNIW 229

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG--TGALEMWK 442
           T NI+L +  K +       L   L ++ V P+IVT   +      G  G  T A ++W 
Sbjct: 230 TYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL--YGRHGLYTEAAKLWD 287

Query: 443 RIGFLFKTVEINTDPLVLAVYG 464
            +      +E    P ++A  G
Sbjct: 288 EM------IEAGCIPCIIAYSG 303



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 92  LQILQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC 150
           L++++  G    +  +  ++  L NS R     ++ D  K  +K   N      +I    
Sbjct: 41  LEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQ-DKVSANLVTYTNLIKEYA 99

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             G +++  + FQEM+     P+   YN++I GY + G F EAL   +EM  +  +    
Sbjct: 100 NAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVH 159

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           TY+  I  YGK  + ++++  L  M   G  PD +TYN L+  +A
Sbjct: 160 TYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVR 160
           + + W     L ++ + + + +   +++N++   +  N      ++ +    GL  EA +
Sbjct: 225 RPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAK 284

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            + EM      P +  Y+ +I  Y   G + EAL    +M++  + P +  Y  L+ AYG
Sbjct: 285 LWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYG 344

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           K     E ++    M  +G  PD ITY +L++ FA AG L
Sbjct: 345 KAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +E  + EA + F+ ++   + P++  Y++++  Y + G + EA    +EM E    P   
Sbjct: 240 KEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y GLI++YG + MY E   C + M+  G  PD   Y  L+  +  AG  +  E  Y  M
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEM 359

Query: 271 LTKRMHLRSSTMVAILDAYMNFGML 295
             +       T   ++ A+ N G L
Sbjct: 360 TKEGFVPDGITYGILVRAFANAGRL 384



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 1/200 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+   N+ R +   ++F   K+  +S  N +    +I     +GL +EA+  + EM+G 
Sbjct: 94  LIKEYANAGRLQDCRKLFQEMKDKGESP-NSWTYNALIQGYGRKGLFKEALELYDEMDGV 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                +  YN  I  Y K G   +    L+EM    + P   TY+ L+  Y K   + + 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L+ M   G  P+  TYN+++        +      ++++ +K +     T  A+L  
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 289 YMNFGMLDKMEKFYKRLLNS 308
           Y   G+  +  K +  ++ +
Sbjct: 273 YGRHGLYTEAAKLWDEMIEA 292



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EM     +P++  YN ++    K     EA      +K   + P   TY  ++  YG+
Sbjct: 216 LREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGR 275

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           + +Y E       M   GC P  I Y+ LI+ +   G+ +     ++ M    +   +  
Sbjct: 276 HGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKI 335

Query: 282 MVAILDAYMNFGMLDKMEKFY 302
             A++DAY   G   + E  Y
Sbjct: 336 YTALMDAYGKAGRCREAELLY 356


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 130/325 (40%), Gaps = 44/325 (13%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             I+  LC E  M+E      +M G  L+P++  Y +I+  + K G+   A   L  M  
Sbjct: 232 NAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVI 291

Query: 203 MNLSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              +P   T+  L++  +   +++D +DM  + M  +G +P  ++YN+LI+     G LK
Sbjct: 292 TGCTPNVVTFTALVRGLFDDGRVHDALDM-WRWMVAEGWAPSTVSYNILIRGLCSVGDLK 350

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
                  SM          T   ++D +   G L      +  +  SR+  K ++V    
Sbjct: 351 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM--SRSGCKPNVVVYTN 408

Query: 320 LAEVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSH 358
           + +V+ K  MF++   L D +                       R+GR   V+   +  H
Sbjct: 409 MVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVF-HEMRRH 467

Query: 359 ACLLSHRGIDSV----------------VREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
            C+ + R  + +                V EM+S  +  ++ T N ++    + +  +  
Sbjct: 468 GCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREA 527

Query: 403 RVLLSELPTRHVKPDIVTIGILYDA 427
            V + ++  + ++P+  T   +  A
Sbjct: 528 MVFVGKMIVQGIQPNAFTFSAIIHA 552



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           F A++R L +  R   +    DMW+ +  E    +  +   +I  LC  G ++ A     
Sbjct: 301 FTALVRGLFDDGR---VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILN 357

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME     P++  Y+++I G+SK G    A+   N+M      P    Y  ++  + K  
Sbjct: 358 SMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 417

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           M+++    +  M L+ C P+ +T+N LI+       + R  G +  M
Sbjct: 418 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEM 464



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E    N      +I  LC+   +  A+  F EM      P+   YN +IHG  + G   
Sbjct: 431 LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCG 490

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL  + EM+   +     TY+ ++    + +M  E  + +  M + G  P+  T++ +I
Sbjct: 491 DALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAII 550

Query: 252 QEF 254
             +
Sbjct: 551 HAY 553



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 54/315 (17%), Positives = 112/315 (35%), Gaps = 7/315 (2%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAFQEME 166
           AV  F +  +  R +   +    ++  +R  E      +I  L  E ++   V  +  M 
Sbjct: 96  AVGAFARAGAPDRALKTFYRAVHDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMR 155

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              + P++  YN ++    +  +   A   L+EM      P   TY  ++    K    D
Sbjct: 156 KDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLD 215

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E    L  M      P   +YN ++        ++ +      M+ + +     T   I+
Sbjct: 216 EATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIV 270

Query: 287 DAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           DA+   G L        R+ +   TP        +  ++    +   LD     +A    
Sbjct: 271 DAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWA 330

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
            + + + + +     +   +G  S++  ME      NV T + ++  + K  D      +
Sbjct: 331 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 390

Query: 406 LSELPTRHVKPDIVT 420
            +++     KP++V 
Sbjct: 391 WNDMSRSGCKPNVVV 405



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+  +  EA+    +M    ++P+   +++IIH Y K G+   A   L  M  +N
Sbjct: 514 VVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVN 573

Query: 205 LSPQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                  Y  L+ +   + K+ D +   LKM+  +G  P+ +T+N+L++
Sbjct: 574 CHRNILVYTILMAELCNQDKLVDAMTYLLKML-YEGIYPNTVTWNVLVR 621


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 1/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G    AVR   EME     P++  Y++++H + + G +++A   L++M     S  
Sbjct: 358 LCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMN 417

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           S  Y+G+I A  K    D+    ++ MK  GC PD  TYN +I       L++  E  ++
Sbjct: 418 SQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFR 477

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           +++ + +     T   ++ A +  G   +  +    +L     L       L +   K  
Sbjct: 478 NLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEG 537

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              R   L +++ ++  +        L++  C     R    + +EM +  +  ++ T N
Sbjct: 538 NVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYN 597

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    K+        LL +LP  +V PDIVT  IL
Sbjct: 598 TLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNIL 634



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  LC+ G + +A+   +EM    L P +  YN++I+G  K+G  + AL  L
Sbjct: 557 NNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLL 616

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            ++   N+ P   TY+ LI  + K ++ D+  M L      G  P+  T+ +++Q F
Sbjct: 617 EKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNF 673



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +   +++  +   +I  LC+EG ++ ++   +EM    +KP+   YN +I+   K GK  
Sbjct: 516 LHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVR 575

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL    EM    L+P   TY+ LI    K          L+ +  +   PD +TYN+LI
Sbjct: 576 DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 635

Query: 252 Q 252
            
Sbjct: 636 S 636



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 103/277 (37%), Gaps = 13/277 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G   +A+   + M      P   +Y ++IH     G   EA + L+EM  M  +  
Sbjct: 187 LCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK-RMEGTY 267
            +T++ L+          E    +  M   GC P  +TY  L+Q     GL + R     
Sbjct: 247 VNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQ-----GLCRTRQADEA 301

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            +ML +   +    +  ++   +  G L +  + Y+ + +   P        L     K 
Sbjct: 302 CAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKL 361

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREMESAKVRWNV 383
             F     + D++  +     +V    LL   C     G+     +++ +M +     N 
Sbjct: 362 GRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFC---RNGMWDDARAMLDQMLAKGFSMNS 418

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              N I+ A  K         L+ E+ ++  KPDI T
Sbjct: 419 QGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICT 455



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L   G  +E +R   EM     +  +  YN +I    K G  + ++  L
Sbjct: 487 NGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALL 546

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            EM    + P + +Y+ LI    K  K+ D +++  +M+   G +PD +TYN LI     
Sbjct: 547 EEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLN-QGLTPDIVTYNTLINGLCK 605

Query: 257 AG 258
            G
Sbjct: 606 VG 607



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q +I  L  +G + EA     EM        +  +N ++ G   +G+  EA   ++ M  
Sbjct: 216 QTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMT 275

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDE-------------------IDMCL----------- 232
               P   TY  L+Q   + +  DE                   I  CL           
Sbjct: 276 QGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATEL 335

Query: 233 -KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            +MM   GC PD  TY++L+      G           M  K       T   +L ++  
Sbjct: 336 YEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCR 395

Query: 292 FGMLDKMEKFYKRLL 306
            GM D       ++L
Sbjct: 396 NGMWDDARAMLDQML 410


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 39/341 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC EG +EEA   F++M    L P +  +N++I+GY K G    A   L+ M++ N
Sbjct: 275 LIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN 334

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L++   +     +  + L+ +  +G  PD +TYN+L+  F   G L    
Sbjct: 335 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 394

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM +  +     T  A++D     G L++       ++     L E     L + +
Sbjct: 395 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 454

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL-------RLLSHA----CLLSHRGID----- 368
            K                 IG+ + V  L       R L+ A    C L   G D     
Sbjct: 455 CK-----------------IGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 497

Query: 369 --SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             +++ +M    +  +V T  I++  + +  +      +L  +      P++ T  I+ +
Sbjct: 498 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 557

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
               G    G +E  + I F   +  ++ +    AV  K H
Sbjct: 558 ----GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 594



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 150 CEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C    + EA R F++M +  + +P+   Y+ +IHG  + G+  EA     EM E    P 
Sbjct: 174 CRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 233

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY  LI+A     M D+    L  M    C P+  TY +LI      G ++   G ++
Sbjct: 234 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 293

Query: 269 SMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
            ML   +     T  A+++ Y         F +L  MEK
Sbjct: 294 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 332



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF+     E  R N      +I  LCE G +EEA +  QEM     +PS   Y  +I  
Sbjct: 184 RVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 243

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
              IG  ++A+  L+EM      P   TY  LI    +    +E +   + M   G  P 
Sbjct: 244 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPG 303

Query: 244 HITYNLLIQEFACAG 258
            IT+N LI  +   G
Sbjct: 304 IITFNALINGYCKEG 318



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA     +M  + L PS+  +  +I G+ + G+   +L  L  MK+   SP   TY  
Sbjct: 495 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 554

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I         +E +  L  M   G SP+H TY +L++    AG L R      +M+   
Sbjct: 555 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 614

Query: 275 MHLRSSTMVAILDAYM 290
               S    A+L  ++
Sbjct: 615 CQPNSHIYSALLSGFV 630



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G    +++  + M+     P++  Y  II+G    G+  EA   L  M    +SP  
Sbjct: 525 CRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 584

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            TY  L++A+ K    D     +  M  +GC P+   Y+ L+  F 
Sbjct: 585 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 630



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 16/236 (6%)

Query: 66  LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV 125
           +LV+ + +   LN      N   S  L+    DG +T   F A+I  L    R  Q   +
Sbjct: 379 ILVDGFCKEGQLNMAFNIFNSMNSAGLE---PDG-FT---FTALIDGLCKLGRLEQANGI 431

Query: 126 FDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
             +   ++K   ++E     +I   C+ G  ++    F+ M       +   +N  +   
Sbjct: 432 --LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 489

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCS 241
            K  K NEA   L +M +  L P   T+  LI+ + +     E  + LKM   MK  GCS
Sbjct: 490 GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRA---GETALSLKMLERMKQAGCS 546

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           P+  TY ++I      G ++  E    SM +  +     T   ++ A++  G LD+
Sbjct: 547 PNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDR 602



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    II  LC  G +EEA      M  F + P+   Y  ++  + K G+ + A   +
Sbjct: 548 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 607

Query: 198 NEMKEMNLSPQSDTYDGLIQAY 219
           + M +    P S  Y  L+  +
Sbjct: 608 STMVKNGCQPNSHIYSALLSGF 629


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C EG M  AVR F+ M+    +P++  YN+++ G+  +GK  +A+  L++M+E  
Sbjct: 306 VVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECG 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI+        +     L++M+ +G + D  TYN+LI      G +    
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +  +  + +   S T   +++     G  D    F ++++++
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSA 469



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           ++ +  ++++ +E+  +  +    ++  LC+    EE +   Q+M+    +P+   Y ++
Sbjct: 214 RVDEALELFRELEQPDM--YTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAAL 271

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           +  + +  K  EA   LNEM +  L P + T   ++ AY +           + MKL GC
Sbjct: 272 VDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGC 331

Query: 241 SPDHITYNLLIQEFACAG 258
            P+  TYN ++Q F   G
Sbjct: 332 EPNVWTYNAMVQGFCNVG 349



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +++    +I  LC+ G ++EA   F  +E   ++P+   +N++I+G  K GKF+ A  FL
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFL 463

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-----------------------IDMCLK- 233
            +M     +P + TY   I+   K K   E                       ID   K 
Sbjct: 464 EKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKE 523

Query: 234 ------------MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                       M+ L GCSPD +TY   ++ +   G L   E     M    + + +  
Sbjct: 524 RNYGLATRIWGQMVSL-GCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMA 582

Query: 282 MVAILDAYMNFGMLD 296
              ++D + + G  D
Sbjct: 583 YNTLIDGHTSIGKTD 597



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G +E A R  + MEG  L      YN +I    K GK +EA    + ++   + P S
Sbjct: 381 CIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNS 440

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            T++ +I    K   +D     L+ M   GC+PD  TY+  I+
Sbjct: 441 VTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIE 483



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 78  NALIQRLNKKVSCP-----LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI 132
           NALI+ L ++         L ++   G W  D F      +    R++Q+    D++  +
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSG-WRPDAF-TFNSLILGYCRTQQLDVAQDLFDKM 190

Query: 133 EKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
                ++   +   +I   CE G ++EA+  F+E+E    +P +  + +++ G     + 
Sbjct: 191 PLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLCDARRG 246

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            E L  L +MKE+   P +  Y  L+  + + +  +E +  L  M  +G  P  +T   +
Sbjct: 247 EEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAV 306

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEK 300
           +  +   G +      ++SM  K       T  A++  + N G       +LD+M +
Sbjct: 307 VNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRE 363



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 97/252 (38%), Gaps = 34/252 (13%)

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           +P   TY+ LI+A  +          L +M   G  PD  T+N LI  +     L   + 
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQD 185

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            +  M  +     + +  A+++ +   G +D+  + ++ L          LV+ L +   
Sbjct: 186 LFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARR 245

Query: 326 KN---YMFSRLDDLGDDLASRIGRTELV--WCL--------RLLSH-------ACLLSHR 365
                YM  ++ +LG   A+R     LV  WC         ++L+         C ++  
Sbjct: 246 GEEGLYMLQKMKELGWRPATR-AYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCT 304

Query: 366 GI----------DSVVREMESAKVRW---NVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            +             VR  ES K++    NV T N ++  +  +        LL ++   
Sbjct: 305 AVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMREC 364

Query: 413 HVKPDIVTIGIL 424
            V+PD+VT  +L
Sbjct: 365 GVEPDVVTYNLL 376


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 3/199 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AVI  L NS R+ +   +F+ + +N  + R   +N+  ++    + G +++A     EME
Sbjct: 297 AVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNA--LLKGYVKTGSLKDAEFVVSEME 354

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              +KP  + Y+ +I  Y+  G++  A + L EM+  N+ P S  Y  ++ +Y     + 
Sbjct: 355 KAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQ 414

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           +    LK MK +G  PD   YN++I  F     L     T++ ML++ +   + T   ++
Sbjct: 415 KSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLI 474

Query: 287 DAYMNFGMLDKMEKFYKRL 305
           + +   G  +  E+ +  +
Sbjct: 475 NCHCKSGRHNMAEELFGEM 493



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  R +      +I   C+ G    A   F EM+     P +  YN +I+   +  ++ +
Sbjct: 461 EGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQ 520

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             LFL++M+   L P S TY  L+  YGK   + +   CL+++K  G  P    YN LI 
Sbjct: 521 VSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALIN 580

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            +A  GL +     ++ M T+ +      + ++++A+
Sbjct: 581 AYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAF 617



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 120/306 (39%), Gaps = 39/306 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G   EA   F+E+     +P    YN+++ GY K G   +A   ++EM++  
Sbjct: 298 VILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAG 357

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI AY     ++   + LK M+     P+   Y+ ++  +   G  ++  
Sbjct: 358 VKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSF 417

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              K M +  +         ++D +  +  LD     ++R+L+    ++ D V       
Sbjct: 418 QVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG--IRPDTV------- 468

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
                                     W   +  H     H   + +  EM+       +T
Sbjct: 469 -------------------------TWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCIT 503

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEM 440
           T NI++ +  + + ++ + + LS++ ++ + P+ +T   L D    + R   D    LE+
Sbjct: 504 TYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFS-DAIECLEV 562

Query: 441 WKRIGF 446
            K  GF
Sbjct: 563 LKSTGF 568



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 116/277 (41%), Gaps = 38/277 (13%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+  F+ M    ++P    +N++I+ + K G+ N A     EM++   SP   TY+ 
Sbjct: 448 LDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNI 507

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I + G+ + ++++ + L  M+  G  P+ ITY  L+  +  +G                
Sbjct: 508 MINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSG---------------- 551

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
              R S  +  L+   + G        Y  L+N+         R L+E+ +  +      
Sbjct: 552 ---RFSDAIECLEVLKSTG-FKPTSTMYNALINAYA------QRGLSELAVNAFR----- 596

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLA 392
                L +  G T  +  L  L +A     R  +  +V++ M+   +  +V T   ++ A
Sbjct: 597 -----LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKA 651

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
            ++++ F+ +  +  E+ T    PD     +L  A R
Sbjct: 652 LIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSALR 688



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + GL E AV AF+ M    L PSL   NS+I+ + +  +  EA   L  MKE N
Sbjct: 578 LINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENN 637

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           + P   TY  L++A  + + + ++    + M   GC+PD
Sbjct: 638 IEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPD 676



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 62/135 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++ +  + G   +A+   + ++    KP+  +YN++I+ Y++ G    A+   
Sbjct: 536 NSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAF 595

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    L+P     + LI A+G+ +   E    L+ MK +   PD +TY  L++     
Sbjct: 596 RLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRV 655

Query: 258 GLLKRMEGTYKSMLT 272
              +++   Y+ M+T
Sbjct: 656 EKFQKVPAVYEEMVT 670



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 114/317 (35%), Gaps = 71/317 (22%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH---------------------- 182
           +IG     G +E+A+    +M     +P    Y+SII                       
Sbjct: 191 LIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIET 250

Query: 183 ---------------GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
                          G+SK G    A+ FL   +   L+P+  T   +I A G      E
Sbjct: 251 DKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHE 310

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +   + ++ +G  P    YN L++ +   G LK  E     M    +     T   ++D
Sbjct: 311 AEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLID 370

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           AY + G          R  ++R  LKE    + + V   +Y++SR+      LAS   + 
Sbjct: 371 AYAHAG----------RWESARIVLKE---MEASNVEPNSYVYSRI------LASYRDKG 411

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
           E  W                  V+++M+S  V+ +    N+++  + K     H      
Sbjct: 412 E--WQKSF-------------QVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFE 456

Query: 408 ELPTRHVKPDIVTIGIL 424
            + +  ++PD VT   L
Sbjct: 457 RMLSEGIRPDTVTWNTL 473



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 20/251 (7%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y+ +I+   +  K  EA L     +   L+P   TY+ LI A  +    ++    +  M
Sbjct: 157 LYSILINALGRSEKLYEAFLL---SQRQVLTPL--TYNALIGACARNGDVEKALNLMSKM 211

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKR--MEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           + DG  PD + Y+ +IQ    +  +    ++  Y  + T ++ +    M  I+  +   G
Sbjct: 212 RRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAG 271

Query: 294 MLDKMEKFYKRLL-NSRTPLKEDLVRKL------AEVYIKNYMFSRLDDLGDDLASRIGR 346
              +  +F      N   P    LV  +         +    +F  + + G +  +R   
Sbjct: 272 DPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTR--- 328

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
               +   L  +    S +  + VV EME A V+ +  T ++++ AY     ++  R++L
Sbjct: 329 ---AYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVL 385

Query: 407 SELPTRHVKPD 417
            E+   +V+P+
Sbjct: 386 KEMEASNVEPN 396


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 4/199 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
            R R++ +  +M+     S +    +E     +I    + G   EA   F+EM+   +KP
Sbjct: 759 GRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKP 818

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
               YN +I+ Y+  G  +EA      M     SP S TY  LI+AY +   + E +  +
Sbjct: 819 GKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETI 878

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M+ +G  P  + +N L+  FA AG  +  E  Y ++L+  +    +    +L  Y+++
Sbjct: 879 MSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDY 938

Query: 293 GMLDKMEKFYKRLLNSRTP 311
           G ++K   F++++  S  P
Sbjct: 939 GCVEKGITFFEQIRESVEP 957



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 152/389 (39%), Gaps = 56/389 (14%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L ++GL+EE+ + F EM+     P    Y+ +I   SK G  +EA+    +M+   + P 
Sbjct: 286 LVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPS 345

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + T   L+  Y K   Y         M+ +    D + Y LLI+ +   GL +  E T+K
Sbjct: 346 NYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFK 405

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDK--------------MEKFYKRLLNSRTPLKE 314
                 +     T +A+   ++N G  +K                +F   +L     +KE
Sbjct: 406 ETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKE 465

Query: 315 DLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           DL    AE   +    + L D G  +D+ +      L   L LL  A           + 
Sbjct: 466 DLAS--AEATFQALSKTGLPDAGSCNDMLN------LYIKLDLLEKA--------KDFIF 509

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           ++    V +++     ++  Y K    +  + L+ E+ T  +  D   I  L    ++  
Sbjct: 510 QIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLILKMLL 569

Query: 433 DGTGALEM-------WKRIGFLFKTVEINTDPLV--------------LAVYGKGHFLRY 471
              G L +       + R G + K   +N D LV              + +YGK H L+ 
Sbjct: 570 KTAGGLSVASHLISKFTREGDISKAQNLN-DQLVKLGRGAEDASIASLITLYGKQHKLKK 628

Query: 472 CEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
             EV+S++E  +  K    Y ++ID   K
Sbjct: 629 AIEVFSAIEGCTSGK--LIYISMIDAYAK 655



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 109/257 (42%), Gaps = 5/257 (1%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           SS++    +   +++++   RI  + +    ++ +  + G    AV  F EME   +   
Sbjct: 321 SSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVAD 380

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
             IY  +I  Y K+G + +A     E +++ L     TY  + Q +     +++    ++
Sbjct: 381 EVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIME 440

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           +M+         +Y +L+Q +     L   E T+++ L+K     + +   +L+ Y+   
Sbjct: 441 LMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQA-LSKTGLPDAGSCNDMLNLYIKLD 499

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR--IGRTELVW 351
           +L+K + F  ++         +L + + +VY K  M      L  ++ +      +E + 
Sbjct: 500 LLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQ 559

Query: 352 CLRLLSHACLLSHRGID 368
            L L+    L +  G+ 
Sbjct: 560 TLSLILKMLLKTAGGLS 576



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 38/194 (19%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  L   G  +EA    +      L+     YN+ I+     G+ + A    + M  +
Sbjct: 683 KVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSL 742

Query: 204 NLSPQSDTYDGLIQAYGKYKMYD------------------------------------- 226
            ++P   TY+ +I  YG+ +  D                                     
Sbjct: 743 GVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSH 802

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E  +  + M+ +G  P  ++YN++I  +A AGL    +  +++ML       S T +A++
Sbjct: 803 EASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALI 862

Query: 287 DAY-MNFGMLDKME 299
            AY  +F  L+  E
Sbjct: 863 RAYTQSFKFLEAEE 876



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 2/150 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A+  F  +EG        IY S+I  Y+K GK  EA     E+    +     +   
Sbjct: 626 LKKAIEVFSAIEG--CTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISK 683

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ A   Y  + E +  ++    DG   D + YN  I     AG L      Y  M++  
Sbjct: 684 VVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLG 743

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +     T   ++  Y     LDK  + + +
Sbjct: 744 VAPSIQTYNTMISVYGRGRKLDKAVEMFNK 773


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            II      G +++A+  +  +    L+PSL+ Y+++I  ++K G+  +A     ++K   
Sbjct: 868  IIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAG 927

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
              P    Y  ++  Y K  MY+      + MKL G  P  ++YN LI  +A AG   + E
Sbjct: 928  FQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAE 987

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                 M        S T + ++ AY + G  ++ E   +R+   +T      VR   EV 
Sbjct: 988  QLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERM---QTAAIRPTVRHYNEVM 1044

Query: 325  IKNYMFSR 332
            +    FSR
Sbjct: 1045 LA---FSR 1049



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA+  F+ M G    P   IYN ++H   K+G+++EA+     M+   L     +Y
Sbjct: 395 GRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSY 454

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             ++    K   ++        M++  C  D + Y  +I  +  AGL    E  ++ M  
Sbjct: 455 ATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNE 514

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            R+ +   T   + +  +  G  ++  +  + LL     L +   + L   Y+K
Sbjct: 515 LRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVK 568



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 7/199 (3%)

Query: 109  VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
            +I     S R+R   ++F   K+       +  SQ ++    + G+ E A   F+ M+  
Sbjct: 903  MISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQ-MMNCYAKSGMYEHAADLFEAMKLR 961

Query: 169  ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             L+P    YN++I  Y++ G+F +A   L EM +    P S T+  LI AY      +E 
Sbjct: 962  GLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEA 1021

Query: 229  DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH---LRSSTMVAI 285
            +  L+ M+     P    YN ++  F+ A L  +   +Y  M    +    + S TM+ I
Sbjct: 1022 ENALERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRI 1081

Query: 286  LDAYMNFGMLDKMEKFYKR 304
            L   +   M ++    YK+
Sbjct: 1082 L---LEGSMFEEGLSLYKK 1097



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 119/295 (40%), Gaps = 48/295 (16%)

Query: 170  LKPSLE----IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
            LKP L     +Y+S++       +  +A   + +M+++ L   S     L+ AY K  + 
Sbjct: 784  LKPELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLV 843

Query: 226  DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            ++ D  + M + DG   D + YN +I+    AG LK+   TY S+    +     T   +
Sbjct: 844  EDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTM 903

Query: 286  LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD------- 338
            +  +   G     EK +K L ++     E +  ++   Y K+ M+    DL +       
Sbjct: 904  ISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGL 963

Query: 339  -----------DLASRIGR------------------TELVWCLRLLSHACLLSHRG--- 366
                       D  +R G+                  + + + L + ++A    HRG   
Sbjct: 964  RPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYA----HRGKCN 1019

Query: 367  -IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              ++ +  M++A +R  V   N ++LA+ + +          ++    ++PD+V+
Sbjct: 1020 EAENALERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVS 1074



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 69/159 (43%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+E+A        G  +   +  YN+II    + G+  +A+   + +  + L P   TY
Sbjct: 841 GLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTY 900

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           D +I  + K     + +   K +K  G  PD   Y+ ++  +A +G+ +     +++M  
Sbjct: 901 DTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKL 960

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           + +     +   ++DAY   G   K E+    +  +  P
Sbjct: 961 RGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCP 999



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 153 GLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           G +E A + F+ +   G A    L  YN ++  Y++     +A L   ++K  ++ P   
Sbjct: 570 GNVERATKTFKTLVESGIA---DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQV 626

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            +  +++ Y    M    +  L+ M+  G +PDHIT  +LI  +  A  ++   G    +
Sbjct: 627 WFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAG----L 682

Query: 271 LTKRMHLRSSTMVAILDAY--MNFGMLDKMEKFYKRLLNSRT 310
           L        S   AI   Y  + F + DK      R+L S T
Sbjct: 683 LEASAKEDESEAAAISRIYLCLKFRLFDKATLLLHRVLESFT 724



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 130/318 (40%), Gaps = 21/318 (6%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMM 235
           Y  +I  Y K+G+F EAL     M      P S  Y+ ++   GK   YDE +D+   M 
Sbjct: 384 YALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQ 443

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           + + C+  + +Y  ++     A   +     +  M  KR  +      +++  Y   G+ 
Sbjct: 444 RQELCTSKY-SYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLY 502

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD-LASRIGRTELVWCLR 354
           D+ EK ++ +   R  +       +A V +K   ++    + ++ LA  +   +  W  +
Sbjct: 503 DEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAW--K 560

Query: 355 LLSHACLLSHRGIDSVVRE----MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            L H C +    ++   +     +ES     ++   N +L  Y +    +  ++L  +L 
Sbjct: 561 TLLH-CYVKAGNVERATKTFKTLVESGIA--DLMAYNDMLSLYAEFDMLEDAKLLFQQLK 617

Query: 411 TRHVKPDIVTIGI---LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
           +  ++PD V  G    LY    +       L   +  GF   T +  T  +++  YG+ +
Sbjct: 618 SSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGF---TPDHITQGILINAYGEAN 674

Query: 468 FLRYCEEVYSSLEPYSRE 485
            +   EE    LE  ++E
Sbjct: 675 RI---EEAAGLLEASAKE 689



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 120/308 (38%), Gaps = 66/308 (21%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
            +++  ++E     +I +  + GL +EA + FQEM    L   ++ ++ + +   K GK+
Sbjct: 478 QMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKY 537

Query: 191 NEALLFLNEM--------------------KEMNLSPQSDTYDGLIQA------------ 218
           NEA+  + E+                    K  N+   + T+  L+++            
Sbjct: 538 NEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDML 597

Query: 219 --YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y ++ M ++  +  + +K     PD + +  +++ +  A ++   E   + M  K   
Sbjct: 598 SLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFT 657

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
               T   +++AY   G  +++E+    L  S    KED                     
Sbjct: 658 PDHITQGILINAY---GEANRIEEAAGLLEAS---AKED--------------------- 690

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
            +  A+ I R  L    RL   A LL HR ++S    ++SA   +N  T N +    +  
Sbjct: 691 -ESEAAAISRIYLCLKFRLFDKATLLLHRVLESFT--LDSAA--YNQLTINFLKAGQVPP 745

Query: 397 KDFKHLRV 404
            +  H R+
Sbjct: 746 AEMLHSRM 753



 Score = 38.9 bits (89), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/137 (18%), Positives = 57/137 (41%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS+ +Y+ ++  Y +  +   A     EM +  L P    +  +I  Y   +M+DE+   
Sbjct: 274 PSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTM 333

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M   G  P  +TY  ++     A  L      ++ ++ + + L       ++  Y  
Sbjct: 334 YEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRK 393

Query: 292 FGMLDKMEKFYKRLLNS 308
            G  ++  + ++ +L +
Sbjct: 394 LGRFEEALEVFEAMLGA 410


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 23/337 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +  V++ L  + R   + ++F   M KN      NE     ++   C  G++E A++  +
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMP---NEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M G     +  + N +I+   K G+ ++A  FLN M     SP + +Y  +++   + +
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++    LK M    C P+ +T+N  I      GL+++     + M      +   T  
Sbjct: 370 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 429

Query: 284 AILDAYMNFGMLDK-MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
           A+++ +   G +D  +E FY       T     L+  L           RLD   + LA 
Sbjct: 430 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA-------ERLDAAAELLAE 482

Query: 343 RIGR---TELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
            + +     +V    L+S  C   L    I+ V + ME      N+ T N +L       
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITNDC 541

Query: 398 DFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
           + +    LL  L +  V PDIVT    IG+L    R+
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 58/114 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C+     +A+    EM      P++  YN II+G  + G+ ++A  FLN +      P 
Sbjct: 190 VCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPD 249

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           + +Y  +++     K +++++     M    C P+ +T+++L++ F   G+++R
Sbjct: 250 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +   + ++N  R  +      + +  E+S   ++ F    ++   C  G ++ A R    
Sbjct: 79  YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIAS 138

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    + P    Y  II G    G+  EAL  L++M      P   TY  L++A  K   
Sbjct: 139 M---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + +    L  M+  GC+P+ +TYN++I
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVII 222



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 2/280 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C EG +++A      +  +  +P    Y +++ G     ++ +      EM E N
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+D L++ + +  M +     L+ M   GC+ +    N++I      G +    
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               +M +      + +   +L         +  ++  K ++    P  E        + 
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            +  +  +   L + ++       +V    L++  C+     +DS +    S   + N  
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR--VDSALELFYSMPCKPNTI 458

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T   +L      +       LL+E+  +   P++VT  +L
Sbjct: 459 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 498



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +    II  LC+ G + EA+    +M     +PS+  Y  ++    K   F +A+  L
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+    +P   TY+ +I    +    D+    L  +   G  PD ++Y  +++    A
Sbjct: 204 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 263

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              + +E  +  M+ K       T   ++  +   GM+++
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C++GLM+EA+   ++M      P+L  YN+++ G +      EAL  L+ +    
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLI 251
           +SP   TY  +I   G     D ++  +KM  +    G  P  + YN ++
Sbjct: 558 VSPDIVTYSSII---GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+     +    + P +  Y+SII   S+  +  EA+   + ++++ + P++  Y+ +
Sbjct: 544 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 603

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           + A  K    D        M  +GC P+ +TY  LI+  A    LK      + + ++
Sbjct: 604 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             IIG+L  E  +EEA++ F  ++   ++P   IYN I+    K    + A+ F   M  
Sbjct: 566 SSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 625

Query: 203 MNLSPQSDTYDGLIQA 218
               P   TY  LI+ 
Sbjct: 626 NGCMPNELTYITLIEG 641


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           PSL  YN +    ++ G  ++A  LFL  ++  +L P + T++G++ AY K  +Y +++ 
Sbjct: 169 PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEY 228

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-KRMHLRSSTMVAILDAY 289
            LK M   G  PD +T+N+LI  +  AG   +ME TYKS++        ++T  ++L +Y
Sbjct: 229 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 288

Query: 290 MNFGMLDKMEKFYKRL 305
                L KME+   R+
Sbjct: 289 GQSRELGKMEQVLVRM 304



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 5/173 (2%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + + +    I+    ++GL  +     +EM    ++P L  +N +I  Y + G F +
Sbjct: 201 EDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVK 260

Query: 193 ALLFLNEMKEMNLS---PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
                  +  +NLS   P + T++ ++ +YG+ +   +++  L  M + G  PD  T+N 
Sbjct: 261 MERTYKSL--VNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNT 318

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           L+  +  AG L  M   +  M+   +  + ST+  +L AY   G++D+ E  +
Sbjct: 319 LMSSYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALF 371


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 134/317 (42%), Gaps = 33/317 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++G     G+  EA+  F  ++   L+P +  Y S+++ Y +  +  +A
Sbjct: 220 KPNIVAYNS--LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKA 277

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               N+MK+ +  P   +Y+ LI AYG   M  E    L  M+ DG  PD ++ + L+  
Sbjct: 278 REVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
                 + R+E   ++  ++ + L +    + + +Y++FG  +K  + Y       T ++
Sbjct: 338 CGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELY-------TSMR 390

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLG----------DDLASRIGRTELVWCLRLLSHACLLS 363
           E  V+  A  Y  N + S    LG          D + S++  T+       LS A    
Sbjct: 391 ESNVKPDAVTY--NILISGSSKLGKYTESLRFFEDMVDSKVSSTK----EGKLSEA---- 440

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
               +S    M+ +    +V T   ++ AY     +K    L  E+    + PD +    
Sbjct: 441 ----ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSS 496

Query: 424 LYDARRIGFDGTGALEM 440
           L +A   G +    L++
Sbjct: 497 LMEAFNKGGEPERVLQL 513



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 139/312 (44%), Gaps = 11/312 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +++A   F EM+ +  KP  +IYNS+IH +S+ G++  A+  + +M    + P   TY+ 
Sbjct: 27  VDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNN 86

Query: 215 LIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A G    + + +++C KM + +G  PD +T+N+++          +    ++ M   
Sbjct: 87  VINACGAAGNWKKALELCKKMTE-NGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFS 331
            +   + T+  I+   +  G   +  + +  +   RT    D+V    +   Y       
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 332 RLDDLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
               + D + +   +  +V    LL ++A    HR   ++   ++   +R ++ +   +L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
            AY +    +  R + +++     KP+ V+   L DA    +   G L+  + +G L + 
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDA----YGSAGMLK--EAVGLLHEM 319

Query: 451 VEINTDPLVLAV 462
            +    P V+++
Sbjct: 320 EKDGIQPDVVSI 331



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 3/256 (1%)

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           +IY  +I  Y++  + ++A     EM+E    P +D Y+ LI A+ +   +      ++ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M      P   TYN +I     AG  K+     K M    +     T   +L A  N   
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR--TELVWC 352
             K   +++ +  +        +  +    +K        +L + +  R  +   ++V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 353 LRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
             ++   C+        ++   M +  V+ N+   N +L AY      +    + + +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 412 RHVKPDIVTIGILYDA 427
             ++PDIV+   L +A
Sbjct: 252 NGLRPDIVSYTSLLNA 267


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R++  +   ++G+    G  EEAV  F+EME   +K  +  YN++I GY +  K+ E   
Sbjct: 399 RLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQK 458

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EMK   + P   TY  LI+ Y K +MY E     + +K +G   D + Y+ LI    
Sbjct: 459 LFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALC 518

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             GL++        M  K       T  +I+DA+
Sbjct: 519 KNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAF 552



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 11/221 (4%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKI 187
           WK I +   + +     +  LC+ G M+ A  A   EM    + P++  Y++++ GYSK 
Sbjct: 324 WKGIGR---DVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKA 380

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
            +F +AL   +EMK + +     +Y+ L+  Y     ++E     K M+  G   D +TY
Sbjct: 381 ERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTY 440

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N LI+ +        ++  +  M  +R++    T   ++  Y    M  +    Y+ L  
Sbjct: 441 NALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYREL-- 498

Query: 308 SRTPLKEDLV--RKLAEVYIKNYMFS---RLDDLGDDLASR 343
            +  +K D+V    L +   KN +     RL D+  +  SR
Sbjct: 499 KQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSR 539



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 11/277 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E A+  F+E        ++  ++++I    +  +F+EA+  L  M +  L P   TY+ 
Sbjct: 206 IELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLVTYNA 265

Query: 215 LIQAYGKYKMYDEIDM-CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A  K ++  EI +  L+ M   GC PD +TYN L++     G  K        M  K
Sbjct: 266 IIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEMEWK 325

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE---DLV--RKLAEVYIKNY 328
            +     T    +DA    G +D      +  ++   P K    ++V    L   Y K  
Sbjct: 326 GIGRDVYTYNTYVDALCKGGRMD----LARHAIDVEMPAKNIWPNVVTYSTLMAGYSKAE 381

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTAN 387
            F    ++ D++   + R + V    L+  +A L          +EME   ++ +V T N
Sbjct: 382 RFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYN 441

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++  Y +   +  ++ L  E+  R + P+ +T   L
Sbjct: 442 ALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTL 478



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 147/365 (40%), Gaps = 52/365 (14%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNS-----QKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++   R ++I    D++   E+SR   + +       +I  L       EAV   + M  
Sbjct: 197 IRTLGRLKKIELALDLF---EESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGK 253

Query: 168 FALKPSLEIYNSIIHGYSKIGK--FNEALLFLNEMKEMNLSPQSDTYDGLIQ---AYGKY 222
           F L+P+L  YN+II   +K G+  F   + FL EM      P   TY+ L++   A G++
Sbjct: 254 FGLEPNLVTYNAIIDAGAK-GELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRW 312

Query: 223 KMYDE--------------------IDMCLKMMKLD-------------GCSPDHITYNL 249
           K+  +                    +D   K  ++D                P+ +TY+ 
Sbjct: 313 KLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYST 372

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           L+  ++ A   +     Y  M    + L   +   ++  Y N G  ++    +K +    
Sbjct: 373 LMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEM--EC 430

Query: 310 TPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRG 366
             +K D+V    L E Y ++  +  +  L D++ A RI   +L +   +  +     +  
Sbjct: 431 CGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAE 490

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              V RE++   ++ +V   + ++ A  K    +    LL  +  +  +P++VT   + D
Sbjct: 491 AMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIID 550

Query: 427 ARRIG 431
           A +IG
Sbjct: 551 AFKIG 555


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++ A ++ +E+    + P +  Y+ +I+ +++ G+F+ +L  L +M+   + P 
Sbjct: 274 LCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD 333

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI    K + + +    L++M+  G  P+ +TYN ++     +G +  +   Y+
Sbjct: 334 VVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYE 393

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
            ML  R      T   I++     GMLD   K ++ + +SR
Sbjct: 394 MMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSR 434



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 19/292 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G+  +A+   +E+ G    P+L IYN II G  +  +  +A   L +M E +
Sbjct: 60  VVDGLCGAGMANQALELVRELSGV-YTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEES 118

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           + P   TY    +GL ++  K K+  E+    + MK +GC P+ ITY  LIQ  + AG  
Sbjct: 119 IVPNVFTYTILLNGLCRS-NKTKLAREV---FQEMKRNGCKPNPITYGTLIQHLSRAG-- 172

Query: 261 KRMEGTYKSMLTKR-MHLRSS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++   + M+ +R + L +   T   I+        LD   KF + +        E   
Sbjct: 173 -EIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTY 231

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRT-ELVWCLRLLSHACLLSH--RGIDSVVREM 374
             L   + ++    R+    ++  +R G + E       L   C   +  R   S V E+
Sbjct: 232 SNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKS-VEEL 290

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             + V  +V T ++++  + +   F     LL ++    VKPD+VT   L +
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLIN 342



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +N  K  +  +++  +I +LC+E   ++A R  + ME     P++  YNS++ G  K
Sbjct: 324 DMRRNGVKPDVVTYST--LINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCK 381

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            GK +E       M +   SP   TY  ++    K  M D      +++K     PD   
Sbjct: 382 SGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAA 441

Query: 247 YNLLIQEFACAGLLKRMEGTYKSM 270
           Y+++I     AG L+   G Y  M
Sbjct: 442 YSMVITSLCRAGKLEEACGMYHGM 465



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 13/356 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I  L  +SR     +V +  K +E+S + N F    ++  LC     + A   FQE
Sbjct: 91  YNGIITGLCRASRVMDAYKVLE--KMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQE 148

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+    KP+   Y ++I   S+ G+ +EAL  + E + + L     T   ++    K   
Sbjct: 149 MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASR 208

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMV 283
            D+    ++ M+  G  P+ +TY+ L+  F   G L R+   ++    ++   L ++   
Sbjct: 209 LDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
             LDA    G LD+  K  + L  S           L   + +   F    +L +D+   
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFK 400
             + ++V    L++  C    R      R    ME+A    NV T N ++    K     
Sbjct: 329 GVKPDVVTYSTLINVLC--KERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMD 386

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTD 456
            +  +   +      PD+VT  I+ +    G    G L+   ++  L K+     D
Sbjct: 387 EVHRVYEMMLKSRCSPDVVTYSIIMN----GLSKAGMLDSAVKLFELIKSSREGPD 438


>gi|297813013|ref|XP_002874390.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297320227|gb|EFH50649.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1027

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 2/194 (1%)

Query: 117  SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             R  Q+ +  +++ N  +S +  +E     +I    + G M EA+  F EM+   +KP  
Sbjct: 809  GRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKAGKMSEALSLFSEMQKKGIKPGT 868

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
              YN ++   +      E    L  M+   +  +S TY  LIQAY +   + E +  + +
Sbjct: 869  PSYNMVVKICATSRLHREVDELLQAMERTGICTESSTYLSLIQAYAESSQFAEAEKTITL 928

Query: 235  MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
            M+  G    H  ++LL+  FA AG++   E  Y  M    +   S+    IL  YM+ G 
Sbjct: 929  MQEKGIPLFHSHFSLLLSAFAKAGMMDEAERIYSKMSEAGISPDSACKRTILKGYMSCGD 988

Query: 295  LDKMEKFYKRLLNS 308
             +K   FYK+++ S
Sbjct: 989  AEKGILFYKKVIRS 1002



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    ++    ++G  EEA+ AF EM+     P    Y+S+I    K G +++A+   
Sbjct: 280 NEFTYTLVVSSYAKQGFKEEALWAFGEMKSLGFIPEEVTYSSVIGLSVKAGDWDQAVGLY 339

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M+   + P + T   ++  Y K + Y +       M+ +    D +   L+I+ +   
Sbjct: 340 EDMRSRGIVPSNYTCASMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKL 399

Query: 258 GLLKRMEGTYKSMLTKRMHLRSS--TMVAILDAYMNFG 293
           GL    +  ++   T+R++L +   T +A+   ++N G
Sbjct: 400 GLFHDAQSIFEE--TERLNLLADEKTYLAMSQVHLNSG 435



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 73/168 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  + E G ++ A   ++ M    +  S++ YN++I  Y +  + ++A+   +  +   
Sbjct: 769 LIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSG 828

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L      Y  +I  YGK     E       M+  G  P   +YN++++  A + L + ++
Sbjct: 829 LYLDEKIYTNMIMHYGKAGKMSEALSLFSEMQKKGIKPGTPSYNMVVKICATSRLHREVD 888

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
              ++M    +   SST ++++ AY       + EK    +     PL
Sbjct: 889 ELLQAMERTGICTESSTYLSLIQAYAESSQFAEAEKTITLMQEKGIPL 936


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   M+ AVR F +++   L P+L  YN++I GYSK+     AL  + EM+E  
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI A+ +    ++      +M+  G  PD  TY++L+      G +K   
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458

Query: 265 GTYKSMLTKRMHLRSSTMV 283
             +KS+    MHL+ ++++
Sbjct: 459 KLFKSL--GEMHLQPNSVI 475



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F M++N+++S I  N +    +I   C +G++++A + F EM    +   +  YN +I G
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             +  KF EA+  ++++ ++ LSP   TY+ LI  +   +  D        +K  G SP 
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPT 367

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            +TYN LI  ++    L       K M  + +     T   ++DA   F  L+  EK
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA---FARLNHTEK 421



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 40/281 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           CE G   +  R    +E F L P++ IY ++I G  K G    A     +M  + L P  
Sbjct: 169 CEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNP 228

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+  + K  +  E     + MK  G  P+   YN LI E+   G++ +    +  
Sbjct: 229 HTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAE 288

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M  K +         ++   +  G L + +KF + +          LV K+         
Sbjct: 289 MREKGI------ACGVMTYNILIGGLCRGKKFGEAV---------KLVHKV--------- 324

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTA 386
                       +++G +  +    +L +      R +DS VR   +++S+ +   + T 
Sbjct: 325 ------------NKVGLSPNIVTYNILING-FCDVRKMDSAVRLFNQLKSSGLSPTLVTY 371

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N ++  Y K+++      L+ E+  R + P  VT  IL DA
Sbjct: 372 NTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R     +  +M   +EKS +  + +    ++  LC  G M+EA + F+ +    L+P+ 
Sbjct: 414 ARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNS 473

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            IYN++IHGY K G    AL  LNEM +  + P   ++   I    + + + E ++ L  
Sbjct: 474 VIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQ 533

Query: 235 MKLDGCSPDHITYNLL 250
           M   G  P    Y ++
Sbjct: 534 MINSGLKPSVSLYKMV 549



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G +  A   F +M    L P+   Y+ +++G+ K G   E       MK   
Sbjct: 199 LIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSG 258

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + P +  Y+ LI  Y    M D+       M+  G +   +TYN+LI
Sbjct: 259 IVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILI 305


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 38/296 (12%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +  + +AV+ F E+      PSL  Y +II G  KIG    AL  L +M+E    P 
Sbjct: 151 LCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPD 210

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I +  K +  +E       M   G  P+ +TY+ ++  F   G L      +K
Sbjct: 211 VVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFK 270

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M+ + +   + T   ++D     GM+ +  + ++        + E+ V   A      Y
Sbjct: 271 QMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEM-------MTENGVEPDA------Y 317

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
            +S L D G  L S++   + ++                D +V +  +  VR      NI
Sbjct: 318 TYSALMD-GYCLQSQMDEAQKLF----------------DIMVGKGFAPSVR----VYNI 356

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           ++  + K +     + LLSE+  R + PD VT    Y     GF   G  ++ +++
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVT----YSTLMQGFCQAGRPQVAQKL 408



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +  M+EA + F  M G    PS+ +YN +I+G+ K  + NEA   L+EM + +L+P +
Sbjct: 327 CLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDT 386

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+Q + +           K M   G  PD ITY++L+      G L       K+
Sbjct: 387 VTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKA 446

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           M   ++         ++    NFG L+   + +  L 
Sbjct: 447 MQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLF 483



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 125/296 (42%), Gaps = 27/296 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG++ EA R F+ M    ++P    Y++++ GY    + +EA    + M    
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P    Y+ LI  + K +  +E    L  M     +PD +TY+ L+Q F  AG  +  +
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQ 406

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +K M +  +   S T   +LD     G LD+  +  K +  S+             + 
Sbjct: 407 KLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIE---------PHIC 457

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCL-------RLLSHACLLS---HRGIDS----V 370
           I N +   + + G   A+R    EL   L        ++++  ++S     G+ +    +
Sbjct: 458 IYNILIQGMCNFGKLEAAR----ELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEM 513

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            R+M       N  T N+ +  +L+  D  +   L+ E+  R    D  T  +L D
Sbjct: 514 FRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/338 (19%), Positives = 117/338 (34%), Gaps = 75/338 (22%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++    EA+  F EM    + P++  Y+SI+HG+  +G+ NEA     +M   N
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT------------------ 246
           + P + T+  L+    K  M  E     +MM  +G  PD  T                  
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQ 336

Query: 247 -----------------YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                            YN+LI     +  L   +     M  + +   + T   ++  +
Sbjct: 337 KLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGF 396

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
              G     +K +K + +                            L D +   I     
Sbjct: 397 CQAGRPQVAQKLFKEMCSYGL-------------------------LPDSITYSI----- 426

Query: 350 VWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
                LL   C   H  +D   R    M+ +K+  ++   NI++         +  R L 
Sbjct: 427 -----LLDGLC--KHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELF 479

Query: 407 SELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           S L  + ++P +VT  ++            A EM++++
Sbjct: 480 SNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM 517


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 3/276 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ EA   F EM    +   +  Y+++I+G+  +GK  EA+  LNEM    
Sbjct: 453 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKT 512

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  L+ A GK     E    L +M      PD  TYN L+  +     +K+ +
Sbjct: 513 INPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQ 572

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M    +     T   +++ +    M+D+    +K +              L +  
Sbjct: 573 HVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGL 632

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWN 382
            K+   S + DL D++  R    +++    L+   C   H  + I ++  +M+   +R N
Sbjct: 633 CKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI-ALFNKMKDQGIRPN 691

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             T  I+L    K    K  + +  +L T+    D+
Sbjct: 692 TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDV 727



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 11/318 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G ++EA+    ++     + +   Y ++I+G  +IG    A+ FL ++    
Sbjct: 69  LIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRL 128

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P  + Y+ +I A  KY++  E       M + G S + +TY+ LI  F   G LK   
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEAL 188

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G    M+ K ++    T   ++DA    G + + +     +L +           L + Y
Sbjct: 189 GLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRW 381
              Y   +   + + + S +G T  V    ++ +      R +D   ++ +EM  ++   
Sbjct: 249 FLVYEVKKAQHVFNAM-SLMGVTPDVHSYNIMINGFCKIKR-VDKALNLFKEMILSRFPP 306

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA----RRIGFDGTGA 437
            +   N IL ++ KMK +     L   L  + ++PD+ T+ IL +      +I F  +  
Sbjct: 307 -IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVL 365

Query: 438 LEMWKRIGFLFKTVEINT 455
            ++ KR G+   TV +NT
Sbjct: 366 AKILKR-GYPPSTVTLNT 382



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G +++A+    ++     + +   Y ++I+G  KIG    A+  L ++    
Sbjct: 383 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P  + Y  +I A  KY++  E       M + G S D +TY+ LI  F   G LK   
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 265 GTYKSMLTKRMHLRSSTMVAILDA 288
           G    M+ K ++    T   ++DA
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDA 526



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/380 (18%), Positives = 150/380 (39%), Gaps = 41/380 (10%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--PQSDTY 212
           +++A   F  M    + P +  YN +I+G+ KI + ++AL   N  KEM LS  P    +
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKAL---NLFKEMILSRFPPIIQF 310

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-----------LLK 261
           + ++ ++ K K Y         ++L G  PD  T N+LI  F   G           +LK
Sbjct: 311 NKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILK 370

Query: 262 R-----------------MEGTYKS-------MLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           R                 ++G  K        +L +   L   +   +++     G    
Sbjct: 371 RGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRG 430

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
             K  +++    T    ++   + +   K  + S    L  ++  +    ++V    L+ 
Sbjct: 431 AIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIY 490

Query: 358 HACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
             C++   +    ++ EM    +  +V T  I++ A  K    K  + +L+ +    VKP
Sbjct: 491 GFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKP 550

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
           D+ T   L +   + ++   A  ++  +  +  T +++T  +++  + K   +     ++
Sbjct: 551 DVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLF 610

Query: 477 SSLEPYSREKKRWTYQNLID 496
             +   +      TY +L+D
Sbjct: 611 KEMHQKNMVPDTVTYSSLVD 630



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 53/104 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N F    ++  LC+ G +++A   FQ++        + IYN +I+G+ K G   EAL 
Sbjct: 689 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALT 748

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            L++M+E    P + T+D +I A  K    D+ +  L+ M   G
Sbjct: 749 MLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 118 RSRQIPQVFDMWKNI----EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +S +I  V+D+   +    + + +  +NS  +I  LC+ G +++A+  F +M+   ++P+
Sbjct: 634 KSGRISYVWDLIDEMRDRGQPADVITYNS--LIDGLCKNGHLDKAIALFNKMKDQGIRPN 691

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              +  ++ G  K G+  +A     ++           Y+ +I  + K  + +E    L 
Sbjct: 692 TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLS 751

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            M+ +GC P+ +T++++I       L K+ E      L ++M  R 
Sbjct: 752 KMEENGCIPNAVTFDIIIN-----ALFKKDENDKAEKLLRQMIARG 792


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 163/401 (40%), Gaps = 42/401 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  FNS  ++  LC+    ++A   F+ M+  ++ P +  +N +I G+ ++G+  EA
Sbjct: 224 KPGIVTFNS--VLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEA 281

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           + F  EM++  ++P   ++  LI  +      D     L+ MK  G  PD + Y ++I  
Sbjct: 282 MKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 254 FACAGLLK-------RMEG--------TYKSMLT---------------KRMHLRS---- 279
           F  AG +         M G        TY ++L                  M  R     
Sbjct: 342 FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPD 401

Query: 280 -STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDL 336
             T   ++  Y   G  +K  + +  LL+ R  L+ D+V    L +   +    ++ ++L
Sbjct: 402 LCTFTTLIHGYCRDGNFEKALQLFDTLLHQR--LRPDVVAYNSLIDGMCRKGDLAKANEL 459

Query: 337 GDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            DD+ +R I    + + + + SH            + EM S     N+ T N I+  Y +
Sbjct: 460 WDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCR 519

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT 455
             + K  +  L ++   ++ PD++T   L        +  GA  ++  +       +  T
Sbjct: 520 SGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVT 579

Query: 456 DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             +++  + +   +     V+  +     E  R+TY +LI+
Sbjct: 580 YNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLIN 620



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  ++W ++    I  N      +I   CE+G +EEA     EM      P++ 
Sbjct: 449 RKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIM 508

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNSII GY + G   +   FL +M + N+ P   T++ LI  Y K +          +M
Sbjct: 509 TYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           + +   PD +TYN++I  F+  G ++     +K M    +     T +++++ ++  G
Sbjct: 569 EKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAG 626



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 130/314 (41%), Gaps = 13/314 (4%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N +    ++   C+    ++A     EME   + P +  +N +I    + G  + A+
Sbjct: 153 SEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAI 212

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++ M    L P   T++ +++   K++ +D+     + M     +PD  ++N+LI  F
Sbjct: 213 ALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGF 272

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G ++     YK M  + +     +   ++  +   G +D    + + +      L  
Sbjct: 273 CRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM--KGLGLVP 330

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-----HRGIDS 369
           D V  +  + I    F R   + + L  R     L     ++++  LL+     HR +D+
Sbjct: 331 DGV--IYTMVIGG--FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 370 --VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++ EM+   V  ++ T   ++  Y +  +F+    L   L  + ++PD+V    L D 
Sbjct: 387 EELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDG 446

Query: 428 RRIGFDGTGALEMW 441
                D   A E+W
Sbjct: 447 MCRKGDLAKANELW 460



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F+++  +EK  +  +      II    E+G MEEA R F++M    ++P    Y S+I+
Sbjct: 561 AFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLIN 620

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSP 207
           G+   G   EA    +EM     +P
Sbjct: 621 GHVTAGNSKEAFQLHDEMMHRGFAP 645


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 23/320 (7%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  +  +V    K      ++E     +I   C+ G M++A R   EM    +  +L +
Sbjct: 302 GRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFV 361

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           YN++I+G  K+G+  E    L EM+++ + P   +Y+ LI  Y +   M    +MC +MM
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC-RMM 420

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G +   +TYN L++ F     +      +  ML + +     +   +LD     G  
Sbjct: 421 VRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKT 480

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-NYMFSRLDDLG--DDLASRIGRTELVWC 352
           ++    +          KE L R LA+  I  N + + L  +G   +    + R + + C
Sbjct: 481 EQALNLW----------KETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRC 530

Query: 353 L-------RLLSHACLLSHRGIDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                    L    C L   G  + ++ +ME      +V   N  +  +   K +  +  
Sbjct: 531 PPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVND 590

Query: 405 LLSELPTRHVKPDIVTIGIL 424
           + SE+  R + P++VT G L
Sbjct: 591 IHSEMSARGLSPNLVTYGAL 610



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 2/192 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++ +  Q  ++WK      +  N      +I  LC+ G M EA      M+     P   
Sbjct: 476 KAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSL 535

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y ++  GY K+G+   A   +N+M+ +  +P  + ++  I  +   K + +++     M
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM 595

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ +TY  LI  +   G L      Y  M+   M+       A++  +   G +
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655

Query: 296 DKMEKFYKRLLN 307
           D+     ++L+N
Sbjct: 656 DEANLVLQKLVN 667



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 23/210 (10%)

Query: 87  KVSCPLQILQHDGDWTKDHFWAVIRF-LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145
           K+S  +  +      + +  W VI F L  S R      +F+  +N ++   + F    +
Sbjct: 683 KISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRN-KRFLPDNFTYSSL 741

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I      G ++EA      M    L P++  YNS+I+G  K GK + A+   N+++   +
Sbjct: 742 IHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801

Query: 206 SPQSDTYDGLIQAYG-----------KYKMYDEIDM-----CLKMMKLDGCSPDHITYNL 249
           SP   TY+ LI  Y            K KM +E  M      L  M  +   P++ITY  
Sbjct: 802 SPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCT 861

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           LI  +  +G ++ +     S L   MH+R 
Sbjct: 862 LIHGYIKSGNMEEI-----SKLYDEMHIRG 886



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    +    C +G + +AV   +EMEG  L+ +L  Y++++  Y  +G   +A   L
Sbjct: 217 DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRIL 276

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFAC 256
             ++   LSP   TY  L++ Y K    +E +  +K MK  G    D + Y ++I  +  
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            G +         M    +H+       +++     G +++++K  + +
Sbjct: 337 RGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 12/225 (5%)

Query: 52  SAPSLDYHSTK-HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI 110
           S PSL  H+   H       +H+ +AL      L+        +  H  +  +D  ++ +
Sbjct: 96  SRPSLVSHAQLLHILARARRFHDARAL------LSSLPPHAEPLFPHLAEVYRDFTFSAV 149

Query: 111 RF---LKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
            F   L+  + + Q+    +++  + K   R +  +  +++  L + G    A   + +M
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               + P       +   Y + G+  +A+ F+ EM+ M L      Y  ++  Y      
Sbjct: 210 RIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWT 269

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           ++    L+ ++  G SP+ +TY LL++ +   G ++  E   K M
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-------- 189
           N      +I  LC+ G +  AV  F +++   + P+   YN++I  Y K GK        
Sbjct: 769 NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLK 828

Query: 190 --------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
                     EA+  L++M E N+ P   TY  LI  Y K    +EI      M + G  
Sbjct: 829 QKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 888

Query: 242 P 242
           P
Sbjct: 889 P 889



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           ++N II G  K G+  +A      ++     P + TY  LI         DE      +M
Sbjct: 702 MWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVM 761

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +P+ ITYN LI     +G L R    +  + +K +     T   ++D Y   G  
Sbjct: 762 LSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 296 DKMEKFYKRLL 306
            +  K  ++++
Sbjct: 822 TEAFKLKQKMV 832


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 136/330 (41%), Gaps = 11/330 (3%)

Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R+I + F + + +    +N    +   +I  LC EG M+E     +EM      P    +
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I+GY  +G F++AL+   EM +  LSP   TY  LI +  K    +     L  M+ 
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRD 371

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+  TY  LI  F+  G LK+     K M+         T  A+++ +   G ++ 
Sbjct: 372 RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMED 431

Query: 298 MEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
                + ++        D+V    +   + +N    +   L  ++ ++    ++     L
Sbjct: 432 ASGLLQEMI--ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL 489

Query: 356 LSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +   C     G +  + +EM S  +  +  T   ++ AY    D      L  E+  +  
Sbjct: 490 IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF 549

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            PDIVT  +L +    GF+     +  KR+
Sbjct: 550 SPDIVTYNVLIN----GFNKQSRTKEAKRL 575



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 105/263 (39%), Gaps = 7/263 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F+EM    + P++  YN +I G+   G     L F  EM+     P   TY+ +I AY K
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            +   E    L++M L G +P+ I+YN++I      G +K      + M  +R      T
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLL-NSRTP---LKEDLVRKLAEVYIKNYMFSRLDDLG 337
              +++ Y N G   +    +  ++ N  +P       L+  + +    N     LD + 
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
           D      GRT             L   +    +++EM        + T N ++  +  + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFL---KQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 398 DFKHLRVLLSELPTRHVKPDIVT 420
             +    LL E+  R   PD+V+
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVS 450



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 15/179 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++  + E    FQEM    L P    Y S+I+ Y   G  ++AL   +EM +  
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG 548

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI------------- 251
            SP   TY+ LI  + K     E    L  +  +   P+ ITYN LI             
Sbjct: 549 FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 252 --QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             + F   GL+   +   +SML K   L       I+  +   G ++K    YK +L+S
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHS 667



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 125/303 (41%), Gaps = 13/303 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+   + EA +  + M    L P+L  YN +I+G  + G+  E    L EM +  
Sbjct: 244 IIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ LI  Y     + +  +    M  +G SP+ +TY  LI     AG L R  
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRKLAEV 323
                M  + +H    T   ++D +   G L +  +  K ++ N  TP     +     +
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP----TIITYNAL 419

Query: 324 YIKNYMFSRLDDLGDDLASRIGR---TELVWCLRLLSHACLLSHRGIDSVVR---EMESA 377
              + +  R++D    L   I R    ++V    ++S  C   ++ ++   +   EM + 
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC--RNQELEKAFQLKVEMVAK 477

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            +  +V T + ++    K +    +  L  E+ +  + PD VT   L +A  I  D   A
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 438 LEM 440
           L +
Sbjct: 538 LRL 540



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 132/322 (40%), Gaps = 8/322 (2%)

Query: 118 RSRQIPQVFD-MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           R++Q  ++ + ++K + +S +  N +    +I   C  G +E  +  F EME     P++
Sbjct: 179 RTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNV 238

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+II  Y K+ K  EA   L  M    L+P   +Y+ +I    +     E    L+ 
Sbjct: 239 VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEE 298

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M      PD +T+N LI  +   G   +    +  M+   +     T   ++++    G 
Sbjct: 299 MSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
           L++  +F  ++ +            L + + +     +   +  ++        ++    
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 355 LLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           L++  C+L        +++EM       +V + + I+  + + ++ +    L  E+  + 
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 414 VKPDIVT----IGILYDARRIG 431
           + PD+ T    I  L   RR+G
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLG 500



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C +GLM EA R  + M     K + E+YN IIHG+SK+G   +A     EM     +P 
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672

Query: 209 SDTYDGLIQA 218
           S T   L ++
Sbjct: 673 SVTIMALAKS 682


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 42/287 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G    A++  + ++G  ++ +  +YN++I G SK    N+A    +EM    
Sbjct: 179 LINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKR 238

Query: 205 LSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           +SP   TY  LI+ +   GK K  D ID+  KM+ L+   PD  T+N+L+  F   G LK
Sbjct: 239 ISPDVVTYSALIRGFFIVGKLK--DAIDLFNKMI-LENIKPDVYTFNILVDGFCKEGRLK 295

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
           + +     M+ + +    ST   ++D +                        +D  RK+ 
Sbjct: 296 KAKNVLDMMMIQDIKPNVSTFNTLVDGFC-----------------------KD--RKMK 330

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVR 380
           E      +F+ +   G      I    + +C  L+   CL+        +   M    V 
Sbjct: 331 E---GKTVFAMMMKQG------IKPNVVTYC-SLMDGYCLVKQVNKAKKIFNTMSQRGVT 380

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            NV + NI++  + K+K       L  E+  +H+ PD+VT   L D 
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDG 427



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 77/170 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      +I  + ++  + +A   + EM    + P +  Y+++I G+  +GK  +A+ 
Sbjct: 205 QLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAID 264

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N+M   N+ P   T++ L+  + K     +    L MM +    P+  T+N L+  F 
Sbjct: 265 LFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFC 324

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
               +K  +  +  M+ + +     T  +++D Y     ++K +K +  +
Sbjct: 325 KDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTM 374



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 117 SRSRQIPQVFDMW--KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R ++   V DM   ++I K  ++ FN+  ++   C++  M+E    F  M    +KP++
Sbjct: 292 GRLKKAKNVLDMMMIQDI-KPNVSTFNT--LVDGFCKDRKMKEGKTVFAMMMKQGIKPNV 348

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y S++ GY  + + N+A    N M +  ++    +Y+ +I  + K K  D+       
Sbjct: 349 VTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIE 408

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           M      PD +TYN LI      GL K  + +Y   L   MH R 
Sbjct: 409 MHHKHIIPDVVTYNSLID-----GLCKSGKISYAFQLVNEMHDRG 448



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +++A++ F EM    + P +  YNS+I G  K GK + A   +NEM +  
Sbjct: 389 MINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRG 448

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ ++ A             L  +K  G  P+  T  +LI+    +G L+   
Sbjct: 449 QPPNIITYNSILNAL------------LTKLKDQGIQPNMHTDTILIKGLCQSGKLEAAR 496

Query: 265 GTYKSMLTK 273
             ++ +L K
Sbjct: 497 KVFEDLLVK 505


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 136/330 (41%), Gaps = 11/330 (3%)

Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R+I + F + + +    +N    +   +I  LC EG M+E     +EM      P    +
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I+GY  +G F++AL+   EM +  LSP   TY  LI +  K    +     L  M+ 
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRD 371

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+  TY  LI  F+  G LK+     K M+         T  A+++ +   G ++ 
Sbjct: 372 RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMED 431

Query: 298 MEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
                + ++        D+V    +   + +N    +   L  ++ ++    ++     L
Sbjct: 432 ASGLLQEMI--ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL 489

Query: 356 LSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +   C     G +  + +EM S  +  +  T   ++ AY    D      L  E+  +  
Sbjct: 490 IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF 549

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            PDIVT  +L +    GF+     +  KR+
Sbjct: 550 SPDIVTYNVLIN----GFNKQSRTKEAKRL 575



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 105/263 (39%), Gaps = 7/263 (2%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F+EM    + P++  YN +I G+   G     L F  EM+     P   TY+ +I AY K
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            +   E    L++M L G +P+ I+YN++I      G +K      + M  +R      T
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLL-NSRTP---LKEDLVRKLAEVYIKNYMFSRLDDLG 337
              +++ Y N G   +    +  ++ N  +P       L+  + +    N     LD + 
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
           D      GRT             L   +    +++EM        + T N ++  +  + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFL---KQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 398 DFKHLRVLLSELPTRHVKPDIVT 420
             +    LL E+  R   PD+V+
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVS 450



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 15/179 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++  + E    FQEM    L P    Y S+I+ Y   G  ++AL   +EM +  
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG 548

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI------------- 251
            SP   TY+ LI  + K     E    L  +  +   P+ ITYN LI             
Sbjct: 549 FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 252 --QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             + F   GL+   +   +SML K   L       I+  +   G ++K    YK +L+S
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHS 667



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 125/303 (41%), Gaps = 13/303 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+   + EA +  + M    L P+L  YN +I+G  + G+  E    L EM +  
Sbjct: 244 IIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ LI  Y     + +  +    M  +G SP+ +TY  LI     AG L R  
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRKLAEV 323
                M  + +H    T   ++D +   G L +  +  K ++ N  TP     +     +
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP----TIITYNAL 419

Query: 324 YIKNYMFSRLDDLGDDLASRIGR---TELVWCLRLLSHACLLSHRGIDSVVR---EMESA 377
              + +  R++D    L   I R    ++V    ++S  C   ++ ++   +   EM + 
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC--RNQELEKAFQLKVEMVAK 477

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            +  +V T + ++    K +    +  L  E+ +  + PD VT   L +A  I  D   A
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 438 LEM 440
           L +
Sbjct: 538 LRL 540



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 132/322 (40%), Gaps = 8/322 (2%)

Query: 118 RSRQIPQVFD-MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           R++Q  ++ + ++K + +S +  N +    +I   C  G +E  +  F EME     P++
Sbjct: 179 RTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNV 238

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+II  Y K+ K  EA   L  M    L+P   +Y+ +I    +     E    L+ 
Sbjct: 239 VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEE 298

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M      PD +T+N LI  +   G   +    +  M+   +     T   ++++    G 
Sbjct: 299 MSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354
           L++  +F  ++ +            L + + +     +   +  ++        ++    
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 355 LLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           L++  C+L        +++EM       +V + + I+  + + ++ +    L  E+  + 
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 414 VKPDIVT----IGILYDARRIG 431
           + PD+ T    I  L   RR+G
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLG 500



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C +GLM EA R  + M     K + E+YN IIHG+SK+G   +A     EM     +P 
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672

Query: 209 SDTYDGLIQA 218
           S T   L ++
Sbjct: 673 SVTIMALAKS 682


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC      EAV  ++EM    LKP +    ++I G  K  K  EA    + M  +N
Sbjct: 301 VVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLN 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +      Y+ LI  + +    D+    +  M+ +GC P  +TYN+L+  +   G++++ E
Sbjct: 361 IELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAE 420

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-------SRTPLKEDLV 317
                M T  ++    +   +L        LDK   F    +            +  D  
Sbjct: 421 NLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAF 480

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
            K+ +V     +F  +D  G   A  +    L+  L  + +  L      + +  +M  A
Sbjct: 481 CKVKKVKSALELFKEMDYKGMQ-ADAVTYGTLINGLFSVGYYNL-----AEELFEQMLKA 534

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           ++  NV   NI+L    K+ D K  + +   +  + + PDIVT   L
Sbjct: 535 QIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTL 581



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G    A   F++M    + P++ +YN ++H   K+G    A      M +  
Sbjct: 511 LINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKE 570

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P   TY+ LI   GK     E     K M+  G  PD +T+  LI 
Sbjct: 571 ILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLIN 618


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 118/288 (40%), Gaps = 1/288 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I  LC+    ++A R F+EM G  L+P+   Y  +IH   K G   +AL   
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M++  +      Y+ LI  Y K    D     L  M  +G +P   +Y+ LI      
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      ++ M  + +   + T  A+++ +     +D+  + + ++++S     E   
Sbjct: 457 GDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
             + E Y       +   L D +     + +      L+S  CL S     +  V ++E+
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +    N  +   +L    +   F     L  E+  R VK D+V+  I+
Sbjct: 577 SYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTII 624



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 71/172 (41%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F+   ++  L  EG   E    + EM    +K  L  +  I++   K     ++ + 
Sbjct: 581 LNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMKE  + P    Y  +I A  K +   +   C   M +DG SP+ +T+ +LI     
Sbjct: 641 FREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCK 700

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +G L   E   K ML   +     T    LD +   G ++K +  +  +L  
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQG 752



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 59/307 (19%), Positives = 119/307 (38%), Gaps = 14/307 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R ++  +V ++  NI  +  +E   + ++   C    +E A+R   +M      PS    
Sbjct: 248 RVQEAVEVKNVMVNIGVTA-DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANC 306

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           + +I    K     EA     ++ ++ + P    Y+ LI    K + +D+ D   K M  
Sbjct: 307 SFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAG 366

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P+ +TY +LI      G+++     +  M  K + +      ++++ Y   G LD+
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDR 426

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW----CL 353
                  ++             L     +N   S   +L  ++A R     + W      
Sbjct: 427 ARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAER----GIAWNNYTFT 482

Query: 354 RLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            L++  C    + +D   R   +M  + V  N  T N+++  Y  + + +    L  ++ 
Sbjct: 483 ALINGFC--KDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMV 540

Query: 411 TRHVKPD 417
              +KPD
Sbjct: 541 EMGLKPD 547



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 1/151 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F     +     EG ME+A      M    L  S+  +N +I G  K GK  EA+  +
Sbjct: 722 NKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLM 780

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++ E   SP   +Y  +I    K    ++       M   G  PD + YN+ I+     
Sbjct: 781 RKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 840

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           G   +  G Y +M+   +     T  A+L  
Sbjct: 841 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 15/153 (9%)

Query: 89  SCPLQILQHDGDWTK----------DHFWAVIRF---LKNSSRSRQIPQVFDMWKNIEKS 135
           +C L     +GD  K           H  +++ F   +K   ++ +I +  D+ + I +S
Sbjct: 727 NCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITES 786

Query: 136 RINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
             +    +   II  LC+ G + +A   + EM    LKP +  YN  I   +  G+ ++A
Sbjct: 787 GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           L     M    + P  DTY  L+        YD
Sbjct: 847 LGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 53/283 (18%), Positives = 104/283 (36%), Gaps = 7/283 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   ++EAV     M    +      Y ++++G+ ++ +   AL   ++M  +   P 
Sbjct: 243 LCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPS 302

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
                 +I    K ++ +E   +  K+  L G  P+   YN LI +          +  +
Sbjct: 303 EANCSFMIDELRKKELVEEAFSLACKLGDL-GMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           K M  + +     T   ++ A    GM++     + ++ +    +       L   Y K 
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKVRWNVT 384
               R   L   +    G T        L  A L  +  + S +   REM    + WN  
Sbjct: 422 GSLDRARGLLSGMVKE-GLTPTAASYSPLI-AGLCRNGDLSSAMELHREMAERGIAWNNY 479

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           T   ++  + K K       L  ++   +V P+ VT  ++ + 
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 8/201 (3%)

Query: 79  ALIQRLNKKVSCPL-QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKN--IEKS 135
           A +++ +K+ SC L + ++  G    D F+  +  +   S+   + Q  + W    I+  
Sbjct: 627 AALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM--IDALSKEENMIQALNCWDQMVIDGY 684

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
             N      +I  LC+ G +  A    +EM    + P+   YN  +  ++  G   +A  
Sbjct: 685 SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD 744

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             + M + +L+    +++ LI+   K  K+ + ID+  K+ +  G SPD I+Y+ +I E 
Sbjct: 745 LHSAMLQGHLASIV-SFNILIKGLCKAGKIQEAIDLMRKITE-SGFSPDCISYSTIIHEL 802

Query: 255 ACAGLLKRMEGTYKSMLTKRM 275
              G + +    +  ML K +
Sbjct: 803 CKMGDINKAFELWNEMLYKGL 823


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA+  L+ M  + L P +
Sbjct: 254 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 313

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI  Y K    ++  +  K M+  G SPD ITYN+++Q     GL +    T ++
Sbjct: 314 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GLFQ----TRRT 364

Query: 270 MLTKRMHLR 278
              K +++R
Sbjct: 365 AAAKELYVR 373



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 83/192 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G M+EA++    M    LKP+   Y+++I+GY KI +  +AL+   EM+   
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ ++Q   + +           +   G   +  TYN+++       L     
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++++    + L + T   ++DA +  G  D+ +  +    ++         R +AE  
Sbjct: 404 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 463

Query: 325 IKNYMFSRLDDL 336
           I   +   LD L
Sbjct: 464 IGQGLLEELDQL 475



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           N F+   ++  LC+E   +EA+     M    G    P +  Y ++I+G+ K G  ++A 
Sbjct: 157 NVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD------------EIDMCLKMMKLDGCSP 242
              +EM +  + P   TY  +I A  K +  D            E +    +M   G  P
Sbjct: 217 STYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKP 276

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D ITY+ LI  +  AG +         M++  +   + T   +++ Y     ++     +
Sbjct: 277 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 336

Query: 303 KRLLNS 308
           K + +S
Sbjct: 337 KEMESS 342



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 42/328 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEM 203
           +IG  C  G ++    A   +     +     +  ++ G     + ++A+ + L  M E+
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLIQEFACAGLL 260
              P   +Y+ L+          E    L MM  D   G  PD ++Y  +I  F   G  
Sbjct: 153 GCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
            +   TY  ML + +     T  +I+ A      +DK            +  KE  V + 
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDK----------PWSHCKEGRVIES 262

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR---EMES 376
            +++              DL  RIG + +++    L+   CL     +D  ++    M S
Sbjct: 263 EKLF--------------DLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVS 306

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYDARRIGF 432
             ++ N  T + ++  Y K+   +   VL  E+ +  V PDI+T  I    L+  RR   
Sbjct: 307 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT-- 364

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVL 460
               A E++ RI      +E++T  ++L
Sbjct: 365 --AAAKELYVRITESGTQIELSTYNIIL 390



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 35/168 (20%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS------------------------ 173
           N      +I   C+   ME+A+  F+EME   + P                         
Sbjct: 312 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 371

Query: 174 -----------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                      L  YN I+HG  K    ++AL     +  M+L  ++ T++ +I A  K 
Sbjct: 372 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 431

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
              DE          +G  P++ TY L+ +     GLL+ ++  + SM
Sbjct: 432 GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 479



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 136 RINEFNSQK-------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           RI E  +Q        I+  LC+  L ++A++ FQ +    LK     +N +I    K+G
Sbjct: 373 RITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVG 432

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           + +EA           L P   TY  + +      + +E+D     M+ +GC+ D    N
Sbjct: 433 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 492

Query: 249 LLIQEFACAGLLKRMEG 265
            +++E    G++  + G
Sbjct: 493 FIVRELLQRGVVVVVSG 509


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 23/320 (7%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            R  +  +V    K      ++E     +I   C+ G M++A R   EM    +  +L +
Sbjct: 302 GRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFV 361

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
           YN++I+G  K+G+  E    L EM+++ + P   +Y+ LI  Y +   M    +MC +MM
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC-RMM 420

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G +   +TYN L++ F     +      +  ML + +     +   +LD     G  
Sbjct: 421 VRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKT 480

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-NYMFSRLDDLG--DDLASRIGRTELVWC 352
           ++    +          KE L R LA+  I  N + + L  +G   +    + R + + C
Sbjct: 481 EQALNLW----------KETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRC 530

Query: 353 L-------RLLSHACLLSHRGIDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                    L    C L   G  + ++ +ME      +V   N  +  +   K +  +  
Sbjct: 531 PPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVND 590

Query: 405 LLSELPTRHVKPDIVTIGIL 424
           + SE+  R + P++VT G L
Sbjct: 591 IHSEMSARGLSPNLVTYGAL 610



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 2/220 (0%)

Query: 87  KVSCPLQILQHDGDWTKDHFWAVIRF-LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145
           K+S  +  +      + +  W VI F L  S R      +F+  +N ++   + F    +
Sbjct: 683 KISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRN-KRFLPDNFTYSSL 741

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I      G ++EA      M    L P++  YNS+I+G  K GK + A+   N+++   +
Sbjct: 742 IHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           SP   TY+ LI  Y K     E     + M  +G  P  ITY++LI      G ++    
Sbjct: 802 SPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIK 861

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
               M+   +     T   ++  Y+  G ++++ K Y  +
Sbjct: 862 LLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEM 901



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 2/192 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++ +  Q  ++WK      +  N      +I  LC+ G M EA      M+     P   
Sbjct: 476 KAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSL 535

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y ++  GY K+G+   A   +N+M+ +  +P  + ++  I  +   K + +++     M
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM 595

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G SP+ +TY  LI  +   G L      Y  M+   M+       A++  +   G +
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655

Query: 296 DKMEKFYKRLLN 307
           D+     ++L+N
Sbjct: 656 DEANLVLQKLVN 667



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    +    C +G + +AV   +EMEG  L+ +L  Y++++  Y  +G   +A   L
Sbjct: 217 DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRIL 276

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLIQEFAC 256
             ++   LSP   TY  L++ Y K    +E +  +K MK  G    D + Y ++I  +  
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            G +         M    +H+       +++     G +++++K  + +
Sbjct: 337 RGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S ++ +  +++  ++   I  N      +I   C+EG   EA +  Q+M    ++P++ 
Sbjct: 782 KSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVI 841

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+ +I+G    G   EA+  L++M E N+ P   TY  LI  Y K    +EI      M
Sbjct: 842 TYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEM 901

Query: 236 KLDGCSP 242
            + G  P
Sbjct: 902 HIRGLLP 908



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 12/225 (5%)

Query: 52  SAPSLDYHSTK-HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI 110
           S PSL  H+   H       +H+ +AL      L+        +  H  +  +D  ++ +
Sbjct: 96  SRPSLVSHAQLLHILARARRFHDARAL------LSSLPPHAEPLFPHLAEVYRDFTFSAV 149

Query: 111 RF---LKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
            F   L+  + + Q+    +++  + K   R +  +  +++  L + G    A   + +M
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               + P       +   Y + G+  +A+ F+ EM+ M L      Y  ++  Y      
Sbjct: 210 RIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWT 269

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           ++    L+ ++  G SP+ +TY LL++ +   G ++  E   K M
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           ++N II G  K G+  +A      ++     P + TY  LI         DE      +M
Sbjct: 702 MWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVM 761

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +P+ ITYN LI     +G L R    +  + +K +     T   ++D Y   G  
Sbjct: 762 LSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 296 DKMEKFYKRLL 306
            +  K  ++++
Sbjct: 822 TEAFKLKQKMV 832


>gi|357165438|ref|XP_003580383.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Brachypodium distachyon]
          Length = 612

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 93/205 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+ +     I+    ++  ++ A+RA+ ++     +P    Y S I+ Y ++G+ + A  
Sbjct: 366 RVTDCVMSTIVNGFVKKRGLKPAIRAYDKLIAMGCEPGQVTYASAINVYCRLGRSDRAEA 425

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +         Y  +I  YG+ +   +    L +MK  GC P+   YN L+    
Sbjct: 426 VFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPNVWVYNSLLDMRG 485

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G  ++ E  +K M+ +++     +  AI+ A+   G LD+   FY+    +   + + 
Sbjct: 486 KLGDSRQAEKIWKEMVRRKVQPDRISYTAIIGAFNRSGELDRCMNFYQEFRETGMKVDQT 545

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDL 340
           +   +  V+ K+  F+ L +L  D+
Sbjct: 546 MASLMVGVFCKSSRFNELIELLRDM 570



 Score = 38.5 bits (88), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 49/107 (45%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G   +A + ++EM    ++P    Y +II  +++ G+ +  + F  E +E  +       
Sbjct: 488 GDSRQAEKIWKEMVRRKVQPDRISYTAIIGAFNRSGELDRCMNFYQEFRETGMKVDQTMA 547

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             ++  + K   ++E+   L+ MKL G   D   Y +++     AGL
Sbjct: 548 SLMVGVFCKSSRFNELIELLRDMKLQGIKLDRRLYMIVLNSLREAGL 594


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 2/144 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++ ++   F+++++++   +N        +I  L   G ++ A     EME     P++
Sbjct: 318 SKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNI 377

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN++I  Y K    + A     EMKE  ++P   +Y  LI+ +GK    D      + 
Sbjct: 378 ITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFRE 437

Query: 235 MKLDGCSPDHITYNLLIQEFACAG 258
           MK +GC P+H+TYNLLI     AG
Sbjct: 438 MKAEGCPPNHVTYNLLIDCLIRAG 461



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 154/380 (40%), Gaps = 34/380 (8%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  R   +    +I +  + G ++  +  +++M      P    +N +I   +K  +  E
Sbjct: 59  EGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEE 118

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     +M ++N+SP   TY  LI++ G     D +    + M   GC P+  TY+ ++ 
Sbjct: 119 ACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMH 178

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            F  AG +      ++ M+ K +   + T   ++DA   FG   ++E+ +  +  SR+  
Sbjct: 179 AFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDA---FGKTGQLERAFDFVGKSRSFT 235

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGD-----DLASRIGRTELVWCLRLLSHACLLSHRGI 367
            E            N + S L   GD     +L  ++    LV     L++A L+   G 
Sbjct: 236 NE---------VTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVS--NELTYAILIERLGW 284

Query: 368 DSVVR-------EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              V        EM    +++++ T N +L    K    +    L  ++  + +  D VT
Sbjct: 285 AGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVT 344

Query: 421 IGILYD--ARRIGFDGTGA--LEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476
             IL +   R    D  GA  LEM +  G     +  NT   +++ YGK   L     ++
Sbjct: 345 YNILINGLGRAGKLDAAGALLLEMEEN-GCAPNIITYNT---LISSYGKWSNLSAATRLF 400

Query: 477 SSLEPYSREKKRWTYQNLID 496
             ++         +Y +LI+
Sbjct: 401 LEMKERGVAPNVVSYSSLIE 420



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G +E A   FQ+M+   L      YN +I+G  + GK + A   L EM+E  
Sbjct: 313 VLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENG 372

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            +P   TY+ LI +YGK+            MK  G +P+ ++Y+ LI+ F  AG
Sbjct: 373 CAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAG 426



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +  A R F EM+   + P++  Y+S+I G+ K G+ + A+    EMK     P   TY+ 
Sbjct: 393 LSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNL 452

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           LI    +   +      L+ M+  GC    +T +LL++
Sbjct: 453 LIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVR 490



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 62/150 (41%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++  R  + M+    K   +++N++IH Y +     +AL  L    +    P + TY  +
Sbjct: 12  DDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSM 71

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           IQ + K        +  K M      PDH T+N+LI   A A  ++     +  M    +
Sbjct: 72  IQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNV 131

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                T   ++ +    G +D + K ++ +
Sbjct: 132 SPDVYTYTILIRSLGTIGRIDAVMKLFESM 161


>gi|326494062|dbj|BAJ85493.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 567

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +EG ME+A    + ME   L+P +  Y+ I+ GY+K G  +EA   L E K+++
Sbjct: 408 VITGLSKEGEMEDAKDLIRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIH 467

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG------ 258
             P   TY  LI+ Y K + +++   CLK MK DG  P+   YN LIQ            
Sbjct: 468 PKPSRVTYHILIRGYCKMEEFEKALECLKEMKEDGLQPNMDEYNKLIQSLCLKAMDWRTA 527

Query: 259 --LLKRMEGT 266
             LL+ MEG+
Sbjct: 528 EKLLEEMEGS 537



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 20/273 (7%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           +EM       S  + N ++  + K+ K   AL  L++  E   +P  D+Y   IQA GK 
Sbjct: 215 KEMGSVPGSLSTPLLNRVLAMFWKLQKSKAALEVLDKFSEFGCTPDGDSYYLAIQAAGKK 274

Query: 223 KMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            M      +C KM+   GC PD      ++  F    ++      Y +   K++ + +S 
Sbjct: 275 SMVGAAWGVCEKMIS-SGCFPDGKKTGEIVTFFCQGKMVTEAHSVYLAAKEKKVQIPTSA 333

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN-YMFSRLDDLGD-- 338
           +  ++      G L K +      L      K D ++   + +    +   R+ ++ D  
Sbjct: 334 LDFLV------GALAKNDATITTALELLGEYKGDSLKHAGKSFAAVIHSLCRMKNVNDAK 387

Query: 339 -------DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                  +L    G     + +  LS    +       ++R MES  +R +V T ++I+ 
Sbjct: 388 KLLMRMVNLGPAPGSAVFNFVITGLSKEGEMED--AKDLIRVMESRGLRPDVYTYSVIMS 445

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            Y K         LL E    H KP  VT  IL
Sbjct: 446 GYAKGGMIDEAHSLLREAKKIHPKPSRVTYHIL 478



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    + +A +    M      P   ++N +I G SK G+  +A   +  M+   
Sbjct: 373 VIHSLCRMKNVNDAKKLLMRMVNLGPAPGSAVFNFVITGLSKEGEMEDAKDLIRVMESRG 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           L P   TY  ++  Y K  M DE    L+  K     P  +TY++LI+ +
Sbjct: 433 LRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIHPKPSRVTYHILIRGY 482



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 145 IIGMLCE-EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++G L + +  +  A+    E +G +LK + + + ++IH   ++   N+A   L  M  +
Sbjct: 337 LVGALAKNDATITTALELLGEYKGDSLKHAGKSFAAVIHSLCRMKNVNDAKKLLMRMVNL 396

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             +P S  ++ +I    K    ++    +++M+  G  PD  TY++++  +A  G++   
Sbjct: 397 GPAPGSAVFNFVITGLSKEGEMEDAKDLIRVMESRGLRPDVYTYSVIMSGYAKGGMIDEA 456

Query: 264 EGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRL 305
               +    K++H + S +    ++  Y       KME+F K L
Sbjct: 457 HSLLRE--AKKIHPKPSRVTYHILIRGYC------KMEEFEKAL 492


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R NEF+   +I  L +EG  E  ++ ++EM     KP+  +Y+++I G  + GK +EA  
Sbjct: 172 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 231

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +L EMK    +P S TY  L+  Y +     +  +  K M  + C+   + Y++LI    
Sbjct: 232 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLC 291

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK     +K ML++ + L      +++  + N  ++++  K + ++L     L+ D
Sbjct: 292 KNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPD 351

Query: 316 LV 317
           +V
Sbjct: 352 VV 353



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC  G +++AV  F+ M           Y++++HG    G+ +EA+  L+EM+   
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    ++ LI A  K          +  M L GC P+ +TYN L+      G L +  
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
                M+  +      T   ++D ++  G
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVDGFVKHG 154



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 41/360 (11%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L N  R  +   + D  + +E +  N      +I  LC++G +  A +    M      P
Sbjct: 45  LCNEGRIDEAVSLLDEMQ-VEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVP 103

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMC 231
           +   YNS++HG    GK ++A+  LN M      P   T+  L+  + K+ +  D + + 
Sbjct: 104 NEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVL 163

Query: 232 L----------------------------------KMMKLDGCSPDHITYNLLIQEFACA 257
           +                                  K M   GC P+ I Y+ LI      
Sbjct: 164 VSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCRE 223

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G     +     M  K     S T  +++  Y   G + K    +K + ++     E   
Sbjct: 224 GKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 283

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--LLSHRGIDSVVREM- 374
             L     KN        +   + SR  + ++V    ++   C   L  +G+  +  +M 
Sbjct: 284 SILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGM-KLFNQML 342

Query: 375 -ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
             + K++ +V T NI+L A+           +L+ +  +   PD +T  I     R   D
Sbjct: 343 CHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMD 402



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 57/147 (38%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           I+    ++G  ++A+     M + N      TY  L+         DE    L  M+++G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P+ + +N+LI      G L R      +M  K       T  +++      G LDK  
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIK 326
               R++ ++    +     L + ++K
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVDGFVK 152


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  +++EAV  F+EM    + P++  YNS+I G  K+GK +  L  ++EM +  
Sbjct: 356 MINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRG 415

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ ++ A  K    D+    L  +K  G  PD  TY +LI+    +G L+  +
Sbjct: 416 QPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQ 475

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             ++ +L K  +L   T   ++  +   G+ D
Sbjct: 476 KVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFD 507



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 9/295 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N      +I  LC +G + +A+    ++  +GF L      Y ++I+G  K+G+   AL 
Sbjct: 139 NAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQV--SYGTLINGLCKVGRITAALQ 196

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L  +    + P +  Y+ +I    K K+ ++       M     SPD  T N LI  F 
Sbjct: 197 LLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFC 256

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK   G    M+ + ++ R  T   ++DA+   G + + +      +     L   
Sbjct: 257 IMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVV 316

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---R 372
               L + Y      ++  D+ D +ASR     +     +++  C +  + +D  V    
Sbjct: 317 TYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKI--KMVDEAVNLFE 374

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           EM   K+  NV T N ++    K+     +  L+ E+  R   P+I+T   + DA
Sbjct: 375 EMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDA 429



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 129/315 (40%), Gaps = 17/315 (5%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +++ +   +I  LC+ G +  A++  + ++G  ++P+  +YN II    K    N+A   
Sbjct: 173 LDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDL 232

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++M    +SP   T + LI  +       E    L  M L+  +P   T+++L+  F  
Sbjct: 233 YSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCK 292

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +K  +      + K + L   T  +++D Y     ++K +  +  + +         
Sbjct: 293 EGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQS 352

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASR------IGRTELVWCL-RLLSHACLLSHRGIDS 369
              +     K  M     +L +++  R      +    L+  L +L   +C+L       
Sbjct: 353 YTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVL------K 406

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           +V EM       N+ T N IL A  K         LL+ L  + ++PD+ T  +L     
Sbjct: 407 LVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIK--- 463

Query: 430 IGFDGTGALEMWKRI 444
            G   +G LE  +++
Sbjct: 464 -GLCQSGKLEDAQKV 477



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 78  NALIQRLNK--KVSCPLQILQHDGDWTKD-HFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           N+LI  L K  K+SC L+++    D  +  +       L    ++  + +   +  N++ 
Sbjct: 389 NSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKD 448

Query: 135 S--RINEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKF 190
              R + +    +I  LC+ G +E+A + F+++  +G+ L   +  Y  +I G+   G F
Sbjct: 449 QGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNL--DVYTYTVMIQGFCVKGLF 506

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           + AL  L++M++    P + TY+ +I +  +    DE DM  K+++
Sbjct: 507 DAALALLSKMEDNGCIPNAKTYEIVILSLFE---KDENDMAEKLLR 549



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +   I  +NS  I+  LC+   +++A+     ++   ++P +  Y  +I G  + GK  +
Sbjct: 416 QPPNIITYNS--ILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLED 473

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           A     ++     +    TY  +IQ +    ++D     L  M+ +GC P+  TY ++I
Sbjct: 474 AQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 53/123 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L + G +   ++   EM      P++  YNSI+    K    ++A+  L
Sbjct: 384 NVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALL 443

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             +K+  + P   TY  LI+   +    ++     + + + G + D  TY ++IQ F   
Sbjct: 444 TNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVK 503

Query: 258 GLL 260
           GL 
Sbjct: 504 GLF 506


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C++G+M EA      M    +KP++  YN++I GY ++GK  EA      M    
Sbjct: 336 VLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKG 395

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ LI  +     +  +   L  MK  G   D +TYN+LI    C G +++  
Sbjct: 396 ISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAV 455

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEKFYKR 304
                M+   +  +  T  AI++ +   G       +  +MEK  KR
Sbjct: 456 KLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKR 502



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 113/289 (39%), Gaps = 39/289 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME--GFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N      ++  LC EG +E++++  +EME  G A  P+L   NS+++G+ K G   EA  
Sbjct: 295 NMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTL---NSVLNGFCKKGMMVEAEG 351

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +++ M +  + P   TY+ LI  Y +     E       M   G SPD  TYN LI  F 
Sbjct: 352 WVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFT 411

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +   + + G    M    +     T   ++ A    G + K  K    ++      K  
Sbjct: 412 TSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKH- 470

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
                   Y  N + +   + GD                          +G   +   ME
Sbjct: 471 ------RTY--NAIINGFCEKGD-------------------------AKGAHDIRIRME 497

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             K R NV T N+ L  + KM       V+L+E+  + + P+ +T  I+
Sbjct: 498 KCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEII 546



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 66/334 (19%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY---SKIGKFNEAL 194
           ++F    +I  LC+ G + +A    ++M G+ L PS+  YN++I GY    + GK     
Sbjct: 187 DKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVD 246

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           + L EM +  +SP   T++ LI  Y K           + M+  G   + +TY  L+   
Sbjct: 247 MLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGL 306

Query: 255 ACAG-------LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              G       L++ ME    + L         T+ ++L+ +   GM+ + E +   +  
Sbjct: 307 CREGKVEDSMKLVEEMEELGLATL--------PTLNSVLNGFCKKGMMVEAEGWVDGM-- 356

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           ++  +K ++V       I  Y   RL  + +  A++                  ++ +GI
Sbjct: 357 AQKGMKPNVVTY--NTLIDGY--QRLGKMKEATAAK----------------GAMAGKGI 396

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                         +V T N ++  +    D++ +  LL E+    VK D+VT  +L   
Sbjct: 397 SP------------DVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVL--- 441

Query: 428 RRIGFDGTGAL----EMWKRIGFLFKTVEINTDP 457
                   GAL    E+ K +  L + VE+  +P
Sbjct: 442 -------IGALCCKGEVRKAVKLLDEMVEVGLEP 468


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  ++  L+ +   ++   +F+  +   K  +  F S  ++   C+EG + EA     +M
Sbjct: 204 FGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTS--LLYGWCKEGKLMEAKHVLVQM 261

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +   ++P + +YN+++ GY++  K  +A   L EM+     P + +Y  LIQ+  K++  
Sbjct: 262 KDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERL 321

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +E       M+ +GC  D +TY+ LI  F   G +KR
Sbjct: 322 EEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKR 358



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 51  SSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI 110
            S   LD+ + K    ++    +  A+ ALI+ + ++   P  I       T   F  ++
Sbjct: 123 QSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQEN--PHLI-------TPQVFVILM 173

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           R   ++    +  QV D   N      +E+    ++  L + G ++EA   F+E+  +  
Sbjct: 174 RRFASARMVHKAVQVLDEMPNY-GCEPDEYVFGCLLDALRKNGSVKEAASLFEELR-YRW 231

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEID 229
           KPS++ + S+++G+ K GK  EA   L +MK+  + P    Y+ L+  Y +  KM D  D
Sbjct: 232 KPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYD 291

Query: 230 MCLKMMKLDGCSPDHITYNLLIQ 252
           + LK M+  GC P+  +Y +LIQ
Sbjct: 292 L-LKEMRRKGCEPNATSYTVLIQ 313



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 4/199 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   +++ ++   +D+ K + +     N  +   +I  LC+   +EEA R F EM+   
Sbjct: 276 LLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNG 335

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +  L  Y+++I G+ K GK       L+EM +    P    Y  ++ A+ K +  +E  
Sbjct: 336 CQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECK 395

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACA-GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             +  M+  GC+PD   YN +I+  AC  G +K     +  M +  +     T V +++ 
Sbjct: 396 ELVNEMQKIGCAPDLSIYNTVIR-LACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMING 454

Query: 289 YMNFGMLDKMEKFYKRLLN 307
           ++  G L +  +++K ++ 
Sbjct: 455 FLEQGCLVEACEYFKEMVG 473



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 66/342 (19%), Positives = 136/342 (39%), Gaps = 18/342 (5%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML---CEEGLMEEAVR 160
           D + A+I+ L   SR RQ   V+ + + + +   +    Q  + ++       ++ +AV+
Sbjct: 131 DAYKAMIKVL---SRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQ 187

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
              EM  +  +P   ++  ++    K G   EA     E++     P    +  L+  + 
Sbjct: 188 VLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELR-YRWKPSVKHFTSLLYGWC 246

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     E    L  MK  G  PD + YN L+  +A A  +       K M  K     ++
Sbjct: 247 KEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNAT 306

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGD 338
           +   ++ +      L++  + +  +   R   + DLV    L   + K     R  +L D
Sbjct: 307 SYTVLIQSLCKHERLEEATRVFVEM--QRNGCQADLVTYSTLISGFCKWGKIKRGYELLD 364

Query: 339 DLASRIGR--TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
           ++  + G    ++++   +++H           +V EM+      +++  N ++    K+
Sbjct: 365 EMIQQ-GHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKL 423

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
            + K    L +E+ +  + P I T  I+ +    GF   G L
Sbjct: 424 GEVKEGVRLWNEMESSGLSPSIDTFVIMIN----GFLEQGCL 461


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 65/161 (40%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  L + A   FQ+M     KP+   YN +IHGY  IGK+ E +  L EM    
Sbjct: 240 VIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARG 299

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  L+    K     E       M   G  P   TY +LI  +A  G L  M 
Sbjct: 300 LKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMH 359

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                M+   +            AY   GM+DK    + ++
Sbjct: 360 SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKM 400



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 138/354 (38%), Gaps = 15/354 (4%)

Query: 75  QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +A++ L+QR+ +    P  +           +  +++ L N  R+ +  ++  M  +   
Sbjct: 143 EAMDVLLQRMPELGCMPDTV----------SYTILLKGLCNEKRAEEALELLHMMADDHG 192

Query: 135 SRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
            R   N  +   +I     EG +++    F EM    + P +  Y ++I G  K   F+ 
Sbjct: 193 RRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDR 252

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A     +M +    P + TY+ LI  Y     + E+   L+ M   G  PD  TY  L+ 
Sbjct: 253 AEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN 312

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G  +     + SM+ K +  + ST   ++  Y   G L +M  F   ++ +    
Sbjct: 313 YLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSP 372

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
              +       Y K  M  +  D+ + +        +V    L+   C L  R  D+ V+
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLG-RVDDAEVK 431

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             +M +  V  N+   N ++     +  ++    L+ E+  + + P+ V    L
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTL 485



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 110/292 (37%), Gaps = 31/292 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G   EA   F  M    +KP +  Y  +IHGY+  G  +E   FL+ M E  
Sbjct: 310 LLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP    ++    AY K  M D+       M+  G SP+ + Y  LI      G +   E
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M+ + +   +  +V           +DK E+             E+LV ++ +  
Sbjct: 430 VKFNQMINEGV---TPNIVVFNSLVYGLCTVDKWER------------AEELVYEMLDQG 474

Query: 325 IK------NYMFSRLDDLGD--------DLASRIG-RTELVWCLRLLSHACLLSHRG-ID 368
           I       N +   L ++G         DL   +G R +      L+S  CL       +
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            V   M S  +     T N +L  Y           L  E+  + V P +VT
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVT 586



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/405 (18%), Positives = 160/405 (39%), Gaps = 29/405 (7%)

Query: 21  LNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNAL 80
           LN   KN    +  FF  ++IRK I        P +  +      +L+  Y    AL+ +
Sbjct: 311 LNYLCKNGRCREARFFFDSMIRKGIK-------PKVSTYG-----ILIHGYATKGALSEM 358

Query: 81  IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--N 138
              L+        ++  +G     H + +  F    ++   I +  D++  + +  +  N
Sbjct: 359 HSFLD--------LMVENGLSPDHHIFNI--FFSAYAKCGMIDKAMDIFNKMRQHGLSPN 408

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
             N   +I  LC+ G +++A   F +M    + P++ ++NS+++G   + K+  A   + 
Sbjct: 409 VVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVY 468

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EM +  + P +  ++ LI          E    + +M+  G  PD  +Y  LI  +   G
Sbjct: 469 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTG 528

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
                E  +  M++  +     T   +L  Y +   +D     ++ +L            
Sbjct: 529 RTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYN 588

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME--- 375
            +     +   FS   +L  ++ +   + ++     +L+  C      +D   +  +   
Sbjct: 589 TILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC--KSNCVDEAFKMFQSLC 646

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           S  ++ N+ T  I++ A LK    +    L + +P   + P++VT
Sbjct: 647 SKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVT 691


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 3/198 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +I+F   +S+  +  Q+ D M K   K  +  FN+   +   C  G +E+ +    +M+ 
Sbjct: 503 MIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNT--FLRAYCNLGKVEDILHLLDQMKS 560

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             LKP +  Y +II GY K    ++A  +L E+ +  L P +  Y+ LI  YG+     +
Sbjct: 561 EGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISD 620

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  MK +G  P  ITYN L+     AGL++  +  +   + K + L       I+ 
Sbjct: 621 AIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQ 680

Query: 288 AYMNFGMLDKMEKFYKRL 305
            +   G +D+   ++K +
Sbjct: 681 GFCKIGKIDEAVMYFKEM 698



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C  GL+EEA   F +     ++  +  Y  II G+ KIGK +EA+++  EM   ++ P 
Sbjct: 647 MCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPN 706

Query: 209 SDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             TY  L+ AY K       +K++DE       M   G  PD ++YN LI 
Sbjct: 707 KMTYTTLMYAYCKCGNKEEAFKLFDE-------MVSSGIVPDTVSYNTLIS 750



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 8/187 (4%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +VF   ++      + +    +I  LC  G ++ A     E+E   ++P++  YN ++  
Sbjct: 201 KVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDA 260

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             + G+  EA      M E  L P   T+  LI    + + + E+D  L+ M+  G +P+
Sbjct: 261 LCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPN 320

Query: 244 HITYNLLI----QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            + YN LI    +E  C+  L+     +  M++K +     T   I  A    G ++  E
Sbjct: 321 EVIYNQLIGWHCREGHCSEALR----LFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAE 376

Query: 300 KFYKRLL 306
           +    +L
Sbjct: 377 QILDEML 383



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 19/352 (5%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R ++  +V  + + +E   I  NE    ++IG  C EG   EA+R F EM    +K ++
Sbjct: 297 ARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTV 356

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN I     K G+   A   L+EM    ++     ++ ++  +   +    +D+ L++
Sbjct: 357 VTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWH--LRGTGRLDVVLRL 414

Query: 235 ---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              M      P+       IQE    G  +     +  +L K + +  +T  A++     
Sbjct: 415 IREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQ 474

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
              + +  K  K +++S           + +   K         L DD+  R  + +L  
Sbjct: 475 GNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFT 534

Query: 352 CLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
               L   C L     I  ++ +M+S  ++ ++ T   I+  Y K KD       L EL 
Sbjct: 535 FNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELI 594

Query: 411 TRHVKPDIVTIGILYDARRIGF-------DGTGALEMWKRIGFLFKTVEINT 455
              ++P+     ++Y+A   G+       D  G L+  K  G     +  N+
Sbjct: 595 KNGLRPN----AVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNS 642



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 92  LQILQHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGM 148
           L  ++H+G   T   + +++ ++ ++    +  ++F   + KNIE   +       II  
Sbjct: 625 LDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIE---LGVIGYTIIIQG 681

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G ++EAV  F+EM    ++P+   Y ++++ Y K G   EA    +EM    + P 
Sbjct: 682 FCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPD 741

Query: 209 SDTYDGLIQAYGKYKMYDEI 228
           + +Y+ LI    +    D+I
Sbjct: 742 TVSYNTLISGCCEVDSLDKI 761



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDT 211
           G +  A  AF E+      PS++  N ++      G+ + A     EM++ N ++P   T
Sbjct: 159 GSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYT 218

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           Y  +I+A  +    D   + L  ++  G  P  +TYN+L+     +G   R+E  ++
Sbjct: 219 YTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSG---RVEEAFQ 272


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 37/321 (11%)

Query: 121 QIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            + + F +   ++   IN     FN+  +I  L +EG M+ A      M    +KP +  
Sbjct: 253 HLKEAFSLLNEMKLKNINPDVCTFNT--LIDALGKEGKMKAAKIVLAVMMKACIKPDVVT 310

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YNS+I GY  + K   A      M +  ++P   TY  +I    K KM DE     + MK
Sbjct: 311 YNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMK 370

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
                PD +TY  LI        L+R     K M  + +     +   +LDA    G L+
Sbjct: 371 YKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLE 430

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
             ++F++RLL     L       +     K  +F    DL   +    G+  +   +   
Sbjct: 431 NAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKME---GKGCMPDAITFK 487

Query: 357 SHACLLSHRG----IDSVVREM------ESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           +  C L  +      + ++REM      E+ KVR                   K  +++L
Sbjct: 488 TIICALFEKDENDKAEKILREMIARGLQEARKVR------------------LKEAKIVL 529

Query: 407 SELPTRHVKPDIVTIGILYDA 427
           + +    +KPD+VT G L D 
Sbjct: 530 AVMTKACIKPDVVTYGTLMDG 550



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ +A   + EM    + P++  YN++++G+  +G   EA   LNEMK  N
Sbjct: 209 IIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKN 268

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T++ LI A GK        + L +M      PD +TYN LI  +     +K  +
Sbjct: 269 INPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAK 328

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             + SM    +     T   ++D      M+D+    ++ +
Sbjct: 329 YVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEM 369



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A   F  M    + P+++ Y  +I G  K    +EA+    EMK  N+ P   TY  
Sbjct: 557 LKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTS 616

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI A  K    +     LK MK  G  PD  +Y +L+     +G L+  +  ++ +L K 
Sbjct: 617 LIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKG 676

Query: 275 MHLRSSTMVAILDAYMNFGMLDK 297
            HL      A+++     G+ D+
Sbjct: 677 YHLNVQVYTAMINELCKAGLFDE 699



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 127/321 (39%), Gaps = 58/321 (18%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N+ + + +I  LC+ G  +   R  +++EG ++KP + +YN+IIH   K         
Sbjct: 165 QLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCK--------- 215

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N++    L    D Y  +I                    + G SP+ +TYN L+  F 
Sbjct: 216 --NKL----LGDACDLYSEMI--------------------VKGISPNVVTYNALVYGFC 249

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G LK        M  K ++    T   ++DA    G +   +     ++  +  +K D
Sbjct: 250 IMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMM--KACIKPD 307

Query: 316 LV--RKLAEVY-----IKN--YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
           +V    L + Y     +KN  Y+F  +   G     R   T +           L   + 
Sbjct: 308 VVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDG---------LCKEKM 358

Query: 367 ID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
           +D   S+  EM+   +  ++ T   ++    K    +    L  ++  + ++PD+ +  I
Sbjct: 359 VDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 418

Query: 424 LYDARRIGFDGTGALEMWKRI 444
           L DA   G     A E ++R+
Sbjct: 419 LLDALCKGGRLENAKEFFQRL 439



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 142 SQKIIGMLCEEGLME-------EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           ++KI+  +   GL E       EA      M    +KP +  Y +++ GY  + +   A 
Sbjct: 502 AEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAK 561

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
                M +M ++P    Y  +I    K K  DE     + MK     P+ +TY  LI   
Sbjct: 562 YVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDAL 621

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                L+R     K M    +     +   +LD     G L+  ++ ++RLL
Sbjct: 622 CKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLL 673



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 37/143 (25%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++  ++EA+  F+EM+   + P++  Y S+I    K      A+  L EMKE  
Sbjct: 582 MIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHG 641

Query: 205 LSPQSDTY----DGL------------------------IQAYG-------KYKMYDE-I 228
           + P   +Y    DGL                        +Q Y        K  ++DE +
Sbjct: 642 IQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEAL 701

Query: 229 DMCLKMMKLDGCSPDHITYNLLI 251
           D+  KM +  GC PD +T++++I
Sbjct: 702 DLQXKM-EDKGCMPDAVTFDIII 723



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 149 LCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           LC+ G +E A   FQ +  +G+ L  ++++Y ++I+   K G F+EAL    +M++    
Sbjct: 656 LCKSGRLEGAKEIFQRLLVKGYHL--NVQVYTAMINELCKAGLFDEALDLQXKMEDKGCM 713

Query: 207 PQSDTYDGLIQA 218
           P + T+D +I A
Sbjct: 714 PDAVTFDIIIWA 725


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 165/374 (44%), Gaps = 51/374 (13%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE--KSRINEFNSQKIIGMLCEEGLME 156
           G + + +F A+I  +  +       +VF+  KN +  ++R + +N   +I +       +
Sbjct: 47  GRFNRKNFPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNC--MIWLHARHQRAD 104

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN--LSPQSDTYDG 214
           +A   F EM+ +  KP +E YN++++ + + G++  AL   ++M +    ++P   +Y+ 
Sbjct: 105 QARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNN 164

Query: 215 LIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI A G   + +  +++C K M  +G  PD +TYN+++  F   G  +     Y  +++K
Sbjct: 165 LINACGSSGQWFKALEIC-KRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISK 223

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYK--RLLNSRTPLKEDLV--RKLAEVYIKNYM 329
           ++ L   +   IL+     G  +     +K  R +N   P   D+V    L  VY     
Sbjct: 224 KVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEP---DVVTFNALLHVYALCGQ 280

Query: 330 FSRLDD-----LGDDLASRIGR--------------TELVWCLRLL----------SHAC 360
            ++  +     +G+ +A  I                TE +  + LL          S++ 
Sbjct: 281 ITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSS 340

Query: 361 LLSHRG-------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           LL+  G          V   M+    + N+ T N ++ AY     ++  R LL ++    
Sbjct: 341 LLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEAR 400

Query: 414 VKPDIVTIGILYDA 427
           ++P++VTI  L+ A
Sbjct: 401 IEPNVVTICSLFAA 414



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 125/317 (39%), Gaps = 3/317 (0%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+   +  LC  G + +A   F  M G  + P++  +N+++  Y+  G + EAL  +  
Sbjct: 268 FNALLHVYALC--GQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGL 325

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           + +    P   +Y  L+ A+GK    ++      +MK     P+ +T+N L+  +A AG 
Sbjct: 326 LVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGK 385

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            +R       M   R+     T+ ++  A       +K+   +      +  L       
Sbjct: 386 YERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNA 445

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAK 378
               YI+   F     L + +  +  R   V  L L++ A  L  +R   ++  +M    
Sbjct: 446 AITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLG 505

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           +   V   + ++ A+ K   +   R +  ++     K ++VT   L  A R+  D   A 
Sbjct: 506 IPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLAC 565

Query: 439 EMWKRIGFLFKTVEINT 455
           E     G    ++   T
Sbjct: 566 EEMVAAGITPDSIAFGT 582



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 40/189 (21%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G   EA   + +M    +  ++E  +++I+ ++K G +NEA    ++M++        TY
Sbjct: 489 GDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTY 548

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE------------------- 253
             L+ AY   +MYD+  +  + M   G +PD I +  L                      
Sbjct: 549 TSLMIAY---RMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRA 605

Query: 254 --------------FACAGLLKRMEGT---YKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
                          AC+  LK  E     Y+ M  +R+ L ++ ++ +L A    G LD
Sbjct: 606 RGILFDDVAYTETLLACS-RLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLD 664

Query: 297 KMEKFYKRL 305
           ++ K +  L
Sbjct: 665 RLHKVFLEL 673


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R++  +   ++G+    G  EEAV  F+EME   +K  +  YN++I GY +  K+ E   
Sbjct: 398 RLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRK 457

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EMK   + P   TY  LI+ Y K +MY E     + +K +G   D + Y+ LI    
Sbjct: 458 LFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALC 517

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             GL++        M  K       T  +I+DA+
Sbjct: 518 KNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAF 551



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKI 187
           WK I +   + +     +  LC+ G M+ A  A   EM    + P++  Y++++ GYSK 
Sbjct: 323 WKGIGR---DVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKA 379

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
            +F +AL   +EMK + +     +Y+ L+  Y     ++E     K M+  G   D +TY
Sbjct: 380 ERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTY 439

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N LI+ +        +   +  M  +R++    T   ++  Y    M  +    Y+ L  
Sbjct: 440 NALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYREL-- 497

Query: 308 SRTPLKEDLV--RKLAEVYIKNYMFS---RLDDLGDDLASR 343
            +  +K D+V    L +   KN +     RL D+  +  SR
Sbjct: 498 KQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSR 538



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 113/277 (40%), Gaps = 11/277 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E A+  F+E        ++  ++++I    +   F+EA+  L  M    L P   TY+ 
Sbjct: 205 IELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNA 264

Query: 215 LIQAYGKYKMYDEIDM-CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           +I A  K ++  EI +  L+ M   GC PD +TYN L++     G  +        M  K
Sbjct: 265 IIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWK 324

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR-----KLAEVYIKNY 328
            +     T    +DA    G +D      +  ++   P K  L        L   Y K  
Sbjct: 325 GIGRDVYTYNTYVDALCKGGRMD----LARHAIDVEMPAKNILPNVVTYSTLMAGYSKAE 380

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLS-HACLLSHRGIDSVVREMESAKVRWNVTTAN 387
            F    ++ D++   + R + V    L+  +A L          +EME   ++ +V T N
Sbjct: 381 RFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYN 440

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++  Y +   +  +R L  E+  R + P+ +T   L
Sbjct: 441 ALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTL 477


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I    + G +++ +  FQEM     + S+  Y+S+I    K G++  AL   
Sbjct: 349 NATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELF 408

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEM      P + TY+ LI A  +   +++     + M+  GC+PD +T+  LI  +   
Sbjct: 409 NEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKG 468

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           G  +R  G Y+ M  +R    +    AI+D     G++
Sbjct: 469 GQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVI 506



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 124 QVFDMWKNIEK-----SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++F+  +N++      S  + +    +I M   +  ++ A+   +EM    ++ ++  Y 
Sbjct: 190 EIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYT 249

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++++   K G    AL   N M++    P   TY+ LI  YGK  ++++    L +MK +
Sbjct: 250 ALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTE 309

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P   TYN LI      G  +     YK ML +     ++T  A++ AY   G LDK+
Sbjct: 310 GVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKV 369

Query: 299 EKFYKRLLN 307
            + ++ +++
Sbjct: 370 MEVFQEMVH 378


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 18/322 (5%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A  AF+ +     +PSL  Y +++   +    F+     L E+++  L P S  ++ LI
Sbjct: 97  QAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALI 156

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A  + +   E       M   GC P   T+N LI+ +  AG  +  +  +  M +    
Sbjct: 157 NALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAG 216

Query: 277 LRS------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             +      +T   ++ A+ + G L++  +   R+  S           LA  Y KN   
Sbjct: 217 GEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDET 276

Query: 331 SRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTAN 387
            R ++L  ++A + G   +E  W + ++   C     G     VR+M+ + V  NV   N
Sbjct: 277 WRAEELVVEMAQQAGLRTSERTWGI-IVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
            +L  +L   D   +  +L  +    +KPDIVT    Y  +       G   M K +   
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVT----YSHQLNALSSMG--HMAKCMKVF 389

Query: 448 FKTVE--INTDPLVLAVYGKGH 467
            K +E  I  DP V ++  KG+
Sbjct: 390 DKMIEAGIEPDPQVYSILAKGY 411



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 110/268 (41%), Gaps = 8/268 (2%)

Query: 77  LNALIQ--RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +NAL++  R+ +  +  L++       T   F  +I+    + R  +  +VFDM  +   
Sbjct: 156 INALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGA 215

Query: 135 S-----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
                 R N      ++   C+ G +EEA R    M      P +  YN++   Y+K  +
Sbjct: 216 GGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDE 275

Query: 190 FNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
              A   + EM ++  L     T+  ++  Y +     E   C++ MK  G  P+ I +N
Sbjct: 276 TWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            L++ F  A  +  ++     M    +     T    L+A  + G + K  K + +++ +
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
                  +   LA+ Y++     + ++L
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEEL 423



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 44/209 (21%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQE------------------------------- 164
           R +E     I+G  C EG + EA+R  ++                               
Sbjct: 293 RTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDD 352

Query: 165 ----MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
               ME F +KP +  Y+  ++  S +G   + +   ++M E  + P    Y  L + Y 
Sbjct: 353 VLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYV 412

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---------KRMEGTYKSML 271
           + +  ++ +  L+ M   G  P+ +T+  +I  +    L+          + E   + M 
Sbjct: 413 RAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWTFETLIWGYSELKQPWKAEEVLQMMQ 472

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
              +  + +T   + DA+   G+++   +
Sbjct: 473 DAGVRPKQTTYCLVADAWKAVGLVENANR 501


>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
 gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
          Length = 731

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E     EA + F EM    ++ +   +N++IH Y K G+  EA L + +
Sbjct: 232 FNT--MISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTK 289

Query: 200 MKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK+  +  P   TY+ LI+ Y K    + +  CL+ M+  G SPD +T+  LI  +A   
Sbjct: 290 MKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANN 349

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++ + E   + M      +  +    ++  Y+    + K E  + R L+SR  L+     
Sbjct: 350 VVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVF-RFLHSRGGLEVSTYV 408

Query: 319 KLAEVYIKN 327
            + +VY ++
Sbjct: 409 GVMDVYAEH 417



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 2/177 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE +   +I +LC+  L+E   R    ++    KPSL   +S++  Y  +G+  EA    
Sbjct: 472 NEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVF 531

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    +      Y  L+ AY +     E    L  +K  G  PD I Y  +++ ++  
Sbjct: 532 KEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNL 591

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           GL    E  Y+ +   R+         +L+ Y+  GM  + E+ ++ +   +  L E
Sbjct: 592 GLTAEAEKIYEEI--SRLSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNE 646



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 8/201 (3%)

Query: 153 GLMEEAVRAFQEM------EGFALKP-SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           G +EEA +AF  +      +G   +P + E +N++I  Y +  KF EA     EM +  +
Sbjct: 201 GDLEEAEKAFWGLFSENLVDGTTKRPENPETFNTMISFYGEHAKFAEASKVFAEMMKAGV 260

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
              + T++ +I  YGK     E ++ + KM +   C PD  TYN LI+ +     L+ + 
Sbjct: 261 ELTTVTFNAMIHVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVKNDKLELVS 320

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G  + M    +     T   ++ AY    ++ K E   + +  S   + + +   +  +Y
Sbjct: 321 GCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMY 380

Query: 325 IKNYMFSRLDDLGDDLASRIG 345
           ++    S+ + +   L SR G
Sbjct: 381 VRARDVSKAESVFRFLHSRGG 401



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 40/228 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALK-PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++ +  E   +++A   F+  +   LK PSL  YN ++  Y    +F +A+     M++ 
Sbjct: 410 VMDVYAEHKCLDQAREVFELAKNAGLKTPSL--YNVMMKAYGACDRFTDAVTVFEAMEKD 467

Query: 204 NLSPQSDTYDGLIQA-----------------------------------YGKYKMYDEI 228
             SP   +++ LIQ                                    YG      E 
Sbjct: 468 GASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREA 527

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +   K M   G   D I Y+ L+  +A AG  +  + T  S+        +    +++  
Sbjct: 528 ERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKL 587

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
           Y N G+  + EK Y+ +  SR          +  +YIK+ MF+  + L
Sbjct: 588 YSNLGLTAEAEKIYEEI--SRLSPDVFAANTMLNLYIKSGMFTEAEQL 633


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 18/322 (5%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A  AF+ +     +PSL  Y +++   +    F+     L E+++  L P S  ++ LI
Sbjct: 97  QAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALI 156

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A  + +   E       M   GC P   T+N LI+ +  AG  +  +  +  M +    
Sbjct: 157 NALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAG 216

Query: 277 LRS------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             +      +T   ++ A+ + G L++  +   R+  S           LA  Y KN   
Sbjct: 217 GEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDET 276

Query: 331 SRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTAN 387
            R ++L  ++A + G   +E  W + ++   C     G     VR+M+ + V  NV   N
Sbjct: 277 WRAEELVVEMAQQAGLRTSERTWGI-IVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
            +L  +L   D   +  +L  +    +KPDIVT    Y  +       G   M K +   
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVT----YSHQLNALSSMG--HMAKCMKVF 389

Query: 448 FKTVE--INTDPLVLAVYGKGH 467
            K +E  I  DP V ++  KG+
Sbjct: 390 DKMIEAGIEPDPQVYSILAKGY 411



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 154/381 (40%), Gaps = 24/381 (6%)

Query: 77  LNALIQ--RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +NAL++  R+ +  +  L++       T   F  +I+    + R  +  +VFDM  +   
Sbjct: 156 INALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGA 215

Query: 135 S-----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
                 R N      ++   C+ G +EEA R    M      P +  YN++   Y+K  +
Sbjct: 216 GGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDE 275

Query: 190 FNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
              A   + EM ++  L     T+  ++  Y +     E   C++ MK  G  P+ I +N
Sbjct: 276 TWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            L++ F  A  +  ++     M    +     T    L+A  + G + K  K + +++ +
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRG- 366
                  +   LA+ Y++     + ++L   +  R+G R  +V    ++S  C ++  G 
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEELLRQMG-RLGVRPNVVTFTTVISGWCSVADMGN 454

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              V   M  A VR N+ T   ++  Y ++K       +L  +    V+P   T  ++ D
Sbjct: 455 AVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVAD 514

Query: 427 ARRIGFDGTGALEMWKRIGFL 447
           A             WK +G +
Sbjct: 515 A-------------WKAVGLV 522



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 51/106 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E+A    ++M    ++P++  + ++I G+  +     A+     M++  + P   T++ L
Sbjct: 418 EKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETL 477

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           I  Y + K   + +  L+MM+  G  P   TY L+   +   GL++
Sbjct: 478 IWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGLVE 523


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R++  +   +I  LC+ G++EEAV+   +M   ++ P +  ++ +I+G+ ++GK N A  
Sbjct: 382 RVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKE 441

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + +M +  L P    Y  LI  Y K     E      +M   G   DH T N+L+  F 
Sbjct: 442 IMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFC 501

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEKF 301
             G L+  E     M    +   S T   I++ Y N       F + DKM  F
Sbjct: 502 RYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSF 554



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 6/212 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+ N  R  +  + + + K + ++ +  NE     +I     EG +E A + F EM  F 
Sbjct: 251 FIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFN 310

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L P+   YN++I G+   G   EAL  ++ M    L P   TY  L+    K   +  + 
Sbjct: 311 LLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVS 370

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+ M++ G    HI+Y  +I      G+L+        ML   ++    T   +++ +
Sbjct: 371 SILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGF 430

Query: 290 MNFGMLDK----MEKFYKRLLNSRTPLKEDLV 317
              G ++     M K YK  L     L   L+
Sbjct: 431 FRVGKINNAKEIMCKMYKTGLVPNGILYSTLI 462



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 138 NEFNSQKIIGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           + F    +I  LC++G ++   + + + +E   L P+  +Y S++ G  K G    AL  
Sbjct: 629 DNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYI 688

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EM   ++ P +  ++ +I  Y +     +++  L  MK      +  TYN+L+  +A 
Sbjct: 689 FEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAK 748

Query: 257 AGLLKRMEGTYKSML 271
              + R    YK M+
Sbjct: 749 RHAMARCFMLYKDMI 763



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +    ++G L +E  ++     F+ M    + P +  +N +++   + GKF  A   L +
Sbjct: 141 YTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRK 200

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF----- 254
           M+E  + P + TY+ L+  Y K   Y      +  M   G   D  TYN+ I        
Sbjct: 201 MEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSR 260

Query: 255 ACAG--LLKRM--------EGTYKSMLT 272
           +  G  LLKRM        E TY ++++
Sbjct: 261 SAKGYLLLKRMRRNMVYPNEITYNTLIS 288



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           W  +E   I+ F    +I   CE   M++A    ++M  F + P+++ YN++ +G  +  
Sbjct: 796 WITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTS 855

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCS 241
            F++A   L  + E    P +  Y  LI          G  K+ DE       MK  G S
Sbjct: 856 DFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDE-------MKTLGIS 908

Query: 242 PDHITYNLLIQEFA 255
             ++  + +++  A
Sbjct: 909 SHNVAMSAIVRGLA 922



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEE 157
           D+  D+F           + + +  +    K IEK  +  N      ++  L + G    
Sbjct: 625 DFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARA 684

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  F+EM    ++P    +N II  YS+ GK ++    L+ MK  NL     TY+ L+ 
Sbjct: 685 ALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLH 744

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            Y K        M  K M   G  PD  +++ LI
Sbjct: 745 GYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLI 778



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 109/303 (35%), Gaps = 44/303 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    ++   C  G +EEA      M    L P+   ++ II+GY   G   +A    
Sbjct: 489 DHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVF 548

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP---DHITYNLLIQEF 254
           ++M      P   TY GL++      +   I+  LK      C P   D++ +N  +   
Sbjct: 549 DKMNSFGHFPSLFTYGGLLKGLC---IGGHINEALKFFHRLRCIPNAVDNVIFNTKLTST 605

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-----MLDKMEKFYKRLLNSR 309
             +G L         M+T      + T   ++      G     +L   +   K LL+  
Sbjct: 606 CRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPN 665

Query: 310 TPLKEDLVRKL-------AEVYIKNYMFSRLDDLGDDLA--------SRIGRTELVWCLR 354
             +   LV  L       A +YI   M ++ D   D +A        SR G+T  V    
Sbjct: 666 PAVYTSLVDGLLKHGHARAALYIFEEMLNK-DVEPDTVAFNVIIDQYSRKGKTSKV---- 720

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
                        + ++  M+S  + +N+ T NI+L  Y K        +L  ++     
Sbjct: 721 -------------NDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGF 767

Query: 415 KPD 417
            PD
Sbjct: 768 LPD 770



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           +L  YN ++HGY+K        +   +M      P   ++  LI  Y + K +D     L
Sbjct: 735 NLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKIL 794

Query: 233 KMMKLDGCSPDHITYNLLIQEFA 255
           + + L+G   D  T+N+LI +F 
Sbjct: 795 RWITLEGHVIDRFTFNMLITKFC 817



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 63/145 (43%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  +C  G ++ A++   EM+   +       ++I+ G +   K   A+  L+ M EM 
Sbjct: 882  LINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQ 941

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + P   T+  L+  Y K     +      +M+      D + YN+LI      G ++   
Sbjct: 942  IIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAF 1001

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAY 289
              Y+ M  + +   +S  + ++D++
Sbjct: 1002 KLYEEMKQRDLWPNTSIYIVLIDSF 1026



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 2/194 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I    NS  + +   VFD   +      + F    ++  LC  G + EA++ F  +
Sbjct: 528 FDCIINGYGNSGDALKAFSVFDKMNSFGHFP-SLFTYGGLLKGLCIGGHINEALKFFHRL 586

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KM 224
                     I+N+ +    + G  ++A+  +NEM   +  P + TY  LI    K  K+
Sbjct: 587 RCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKI 646

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
              + +  K ++    SP+   Y  L+      G  +     ++ ML K +   +     
Sbjct: 647 VAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNV 706

Query: 285 ILDAYMNFGMLDKM 298
           I+D Y   G   K+
Sbjct: 707 IIDQYSRKGKTSKV 720



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 108  AVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
            A++R L NS +      V D+   ++    +  F +  ++ + C+E  + +A+     ME
Sbjct: 916  AIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTT--LMHVYCKEANVAKALELRSIME 973

Query: 167  GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY--GKYKM 224
               +K  +  YN +I G    G    A     EMK+ +L P +  Y  LI ++  G Y++
Sbjct: 974  HCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQI 1033

Query: 225  YDE 227
              E
Sbjct: 1034 ESE 1036


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 47/292 (16%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E  +   +EM    L P    YNS+I G  K G++ EAL  L EM    L+P++ +Y
Sbjct: 229 GQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISY 288

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---------LLKRM 263
           +  I+A G+   + E    L+ M+  G +PD I+Y+  I+  AC G         LL  M
Sbjct: 289 NMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIK--ACGGGGQWETSVDLLDEM 346

Query: 264 EGTYKSMLTKRMHLRSSTM-----------VAILDAYMNFGMLDKMEKFYKRLL----NS 308
            G  + +    +H  S+ +           V +L      G+      F   +     + 
Sbjct: 347 AG--RGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSG 404

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
           R     +L++++    +K    S    +  +   + G+ E+   LR              
Sbjct: 405 RWKEALELLKEMPAKRLKPDAISYNSAI--EACGKGGQWEMALELR-------------- 448

Query: 369 SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
              R+M +  +  NV ++NI + A  +   ++    LL ++P + + P+++T
Sbjct: 449 ---RQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVIT 497



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 2/180 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +S   I    E G  +E +   ++M    L P++  YNS I    K G++ +AL  L
Sbjct: 459 NVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLL 518

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +MKE+ ++P S TY+  I A  K   + E    L+ M   G +PD I+Y   I  +   
Sbjct: 519 AKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKN 578

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +R     + M TK +     T  +++ A    G  +K     K L    T +  DL+
Sbjct: 579 GQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKEL--KETAVAPDLM 636



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS   I    + G  +EAV   +EM G  L P +  Y + I  Y K G++  A+  L +
Sbjct: 533 YNS--AIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQ 590

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           M    L+P   TY+ +I+A G+   +++    LK +K    +PD ++YNL I   AC 
Sbjct: 591 MPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAIS--ACG 646



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 15/288 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS   I    + G  +EA+   +EM    LKP    YNS I    K G++  AL    +
Sbjct: 393 FNS--AIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQ 450

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    L+P   + +  I+A G+   + E    L+ M   G +P+ ITYN  I+     G 
Sbjct: 451 MPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQ 510

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            ++       M    M   S T  + + A    G   +     + +      L  D++  
Sbjct: 511 WEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQG--LTPDVISY 568

Query: 320 LAEV--YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVR 372
            A +  Y KN  + R  +L   + ++ G T  V     +  AC    RG +      +++
Sbjct: 569 TAAIDAYGKNGQWERAVELLRQMPTK-GLTPNVITYNSVIKAC---GRGGEWEKALDLLK 624

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           E++   V  ++ + N+ + A  K   ++    LL E+P   + PD+++
Sbjct: 625 ELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVIS 672



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E AV   ++M    L P++  YNS+I    + G++ +AL  L E+KE  ++P   +Y
Sbjct: 579 GQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSY 638

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           +  I A GK   ++E    L+ M  +G +PD I+Y   I+  AC
Sbjct: 639 NLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIR--AC 680



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 37/291 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E AV   +EM    + P    YNS I    + G++   +  L EM  + L+P + TY+ +
Sbjct: 197 EIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSV 256

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRME--GT 266
           I   GK   + E    L  M   G +P+ I+YN+ I+    +G       +L++ME  G 
Sbjct: 257 ITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGV 316

Query: 267 YKSMLTKRMHLRS-------STMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPLKEDLVR 318
              +++    +++        T V +LD     G+      F   ++   +    E  V 
Sbjct: 317 TPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVE 376

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMES 376
            L EV                  + +G T           AC  S R  ++  +++EM +
Sbjct: 377 LLREV------------------TALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +++ +  + N  + A  K   ++    L  ++PT+ + P++++  I   A
Sbjct: 419 KRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRA 469



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 17/272 (6%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           E +R   E EG  + P++  YNS I       ++  A+  L EM +  + P   +Y+  I
Sbjct: 165 ELLREIPEQEG--VSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAI 222

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           +A G+   ++ +   L+ M   G +PD ITYN +I      G  K        M  K + 
Sbjct: 223 KACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLT 282

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYI--KNYMFSRL 333
             + +    + A    G   +  +  +++ +   TP   D++   A +        +   
Sbjct: 283 PETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTP---DVISYDAAIKACGGGGQWETS 339

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVREMESAKVRWNVTTANI 388
            DL D++A R      +      + A +   +G        ++RE+ +  +  + T+ N 
Sbjct: 340 VDLLDEMAGRGVAPNTI----HFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNS 395

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            + A  K   +K    LL E+P + +KPD ++
Sbjct: 396 AIAACTKSGRWKEALELLKEMPAKRLKPDAIS 427



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           A+  + KN    R +  +  M        +  +NS  +I      G  E+A+   +E++ 
Sbjct: 571 AIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNS--VIKACGRGGEWEKALDLLKELKE 628

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            A+ P L  YN  I    K G++ EAL  L EM    L+P   +Y   I+A      +++
Sbjct: 629 TAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEK 688

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               L +M   G SP   +Y+L I+  AC    +R E
Sbjct: 689 ALGLLNLMGAHGVSPTATSYSLAIE--ACGKGGRREE 723



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            +K   R  +  +  D+ K ++++ +     +    I    + G  EEA+   +EM    
Sbjct: 606 VIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEG 665

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L P +  Y S I   +  G++ +AL  LN M    +SP + +Y   I+A GK    +E  
Sbjct: 666 LTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAV 725

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFA 255
             ++ M   G S  +I+ +L+++   
Sbjct: 726 CLVREMAQRGLSHRNISNSLIVEALG 751


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 10/305 (3%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E    AF  M    LKP++  YN++I  Y+  G   EA    NE+K+    P   +Y
Sbjct: 353 GQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSY 412

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+ AYGK    ++     ++M+ + C P+ ++YN LI  +   GLL         M  
Sbjct: 413 TSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER 472

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +     ++  +L A    G   K++            L           Y+    + +
Sbjct: 473 NGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDK 532

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTANIILL 391
              L   + ++  + + V    L+S  C +S  G     + EM   K+  +    + ++ 
Sbjct: 533 ALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVIC 592

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           AY K         + +++     +PD++T    Y A    +D     E W++   LF  +
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVIT----YTAMIHAYD---VAENWEKASALF--L 643

Query: 452 EINTD 456
           E+ TD
Sbjct: 644 EMETD 648



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N       IG     G  ++A+  ++ M    +KP    YN +I G  K+ K+ EAL 
Sbjct: 511 KLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALG 570

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           FL+EM ++ +    + Y  +I AY K     E +     MK+ GC PD ITY  +I  + 
Sbjct: 571 FLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYD 630

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            A   ++    +  M T  +   S    +++ A+   G   K+
Sbjct: 631 VAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKV 673



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 132/306 (43%), Gaps = 17/306 (5%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  +IG     G+ +EA   F E++     P +  Y S+++ Y K GK  +A
Sbjct: 371 KPNIVSYNA--LIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKA 428

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +     M+  +  P   +Y+ LI AYG   +  E    L  M+ +G  P+ ++   L+  
Sbjct: 429 MKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAA 488

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--- 310
               G   +++    +   + + L ++   + + +Y++ G  DK    Y+ +   +    
Sbjct: 489 CGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPD 548

Query: 311 PLKED-LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--- 366
           P+  + L+    ++         LD++ D    +I  ++ V+     S  C  S +G   
Sbjct: 549 PVTYNVLISGCCKMSKYGEALGFLDEMMD---LKIPLSKEVYS----SVICAYSKQGQVT 601

Query: 367 -IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             +S+  +M+    R +V T   ++ AY   ++++    L  E+ T  V+PD +    L 
Sbjct: 602 EAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLM 661

Query: 426 DARRIG 431
            A   G
Sbjct: 662 RAFNKG 667



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 156/348 (44%), Gaps = 35/348 (10%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLME 156
           G +++ +F  +IR +          QVF   KN +   +R + +N   +I +     +++
Sbjct: 122 GRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYN--MMIRLHARHNIVD 179

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A   F EM+ +  KP  E YN++I+ + + G++  A+  +++M    + P   TY+ LI
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 217 QAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
            A G    + E +++C KM + +G  PD +T+N+++  +       ++   ++ M    +
Sbjct: 240 NACGSSGNWKEALNVCKKMTE-NGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNI 298

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-------IKNY 328
              ++T+  ++   +  G   K    +  +   R+    D+V     ++       I+N 
Sbjct: 299 RPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENC 358

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGID----SVVREMESAKVRW 381
             +    L + L   I           +S+  L+   +  G+D    SV  E++      
Sbjct: 359 QTAFNTMLAEGLKPNI-----------VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHP 407

Query: 382 NVTTANIILLAYLKM-KDFKHLRVLLSELPTR-HVKPDIVTIGILYDA 427
           +V +   +L AY K  K  K ++V   EL  R H KP++V+   L DA
Sbjct: 408 DVVSYTSLLNAYGKSGKPEKAMKVF--ELMRRNHCKPNLVSYNALIDA 453



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 119/297 (40%), Gaps = 51/297 (17%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  + +IIH YS  G+        N M    L P   +Y+ LI AY  + M  E    
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAY 289
              +K +G  PD ++Y  L+  +  +G  ++    ++  L +R H + + +   A++DAY
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFE--LMRRNHCKPNLVSYNALIDAY 454

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
            + G+L +  +    +   R  ++ ++V                             T L
Sbjct: 455 GSKGLLTEAVEILHEM--ERNGVQPNIVSIC--------------------------TLL 486

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
             C R            I SV+   E   ++ N T  N  + +YL + ++     L   +
Sbjct: 487 AACGRCGQKV------KIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVY 463
            T+ VKPD VT  +L          +G  +M K    +GFL + +++   PL   VY
Sbjct: 541 RTKKVKPDPVTYNVLI---------SGCCKMSKYGEALGFLDEMMDLKI-PLSKEVY 587



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+     EA+    EM    +  S E+Y+S+I  YSK G+  EA     +MK + 
Sbjct: 555 LISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVG 614

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  +I AY   + +++       M+ D   PD I  + L++ F   G   ++ 
Sbjct: 615 CRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVL 674

Query: 265 GTYKSMLTKRMHLRSSTMVAILDA 288
              + M  K++   +S+   ++ A
Sbjct: 675 VLAEFMREKKIPFNNSSFFEMVSA 698


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 10/305 (3%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E    AF  M    LKP++  YN++I  Y+  G   EA    NE+K+    P   +Y
Sbjct: 353 GQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSY 412

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+ AYGK    ++     ++M+ + C P+ ++YN LI  +   GLL         M  
Sbjct: 413 TSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER 472

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             +     ++  +L A    G   K++            L           Y+    + +
Sbjct: 473 NGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDK 532

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTANIILL 391
              L   + ++  + + V    L+S  C +S  G     + EM   K+  +    + ++ 
Sbjct: 533 ALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVIC 592

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           AY K         + +++     +PD++T    Y A    +D     E W++   LF  +
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVIT----YTAMIHAYD---VAENWEKASALF--L 643

Query: 452 EINTD 456
           E+ TD
Sbjct: 644 EMETD 648



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N       IG     G  ++A+  ++ M    +KP    YN +I G  K+ K+ EAL 
Sbjct: 511 KLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALG 570

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           FL+EM ++ +    + Y  +I AY K     E +     MK+ GC PD ITY  +I  + 
Sbjct: 571 FLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYD 630

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
            A   ++    +  M T  +   S    +++ A+   G   K+
Sbjct: 631 VAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKV 673



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 132/306 (43%), Gaps = 17/306 (5%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +N+  +IG     G+ +EA   F E++     P +  Y S+++ Y K GK  +A
Sbjct: 371 KPNIVSYNA--LIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKA 428

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +     M+  +  P   +Y+ LI AYG   +  E    L  M+ +G  P+ ++   L+  
Sbjct: 429 MKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAA 488

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--- 310
               G   +++    +   + + L ++   + + +Y++ G  DK    Y+ +   +    
Sbjct: 489 CGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPD 548

Query: 311 PLKED-LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--- 366
           P+  + L+    ++         LD++ D    +I  ++ V+     S  C  S +G   
Sbjct: 549 PVTYNVLISGCCKMSKYGEALGFLDEMMD---LKIPLSKEVYS----SVICAYSKQGQVT 601

Query: 367 -IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             +S+  +M+    R +V T   ++ AY   ++++    L  E+ T  V+PD +    L 
Sbjct: 602 EAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLM 661

Query: 426 DARRIG 431
            A   G
Sbjct: 662 RAFNKG 667



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 156/348 (44%), Gaps = 35/348 (10%)

Query: 99  GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLME 156
           G +++ +F  +IR +          QVF   KN +   +R + +N   +I +     +++
Sbjct: 122 GRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYN--MMIRLHARHNIVD 179

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A   F EM+ +  KP  E YN++I+ + + G++  A+  +++M    + P   TY+ LI
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 217 QAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
            A G    + E +++C KM + +G  PD +T+N+++  +       ++   ++ M    +
Sbjct: 240 NACGSSGNWKEALNVCKKMTE-NGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNI 298

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-------IKNY 328
              ++T+  ++   +  G   K    +  +   R+    D+V     ++       I+N 
Sbjct: 299 RPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENC 358

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGID----SVVREMESAKVRW 381
             +    L + L   I           +S+  L+   +  G+D    SV  E++      
Sbjct: 359 QTAFNTMLAEGLKPNI-----------VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHP 407

Query: 382 NVTTANIILLAYLKM-KDFKHLRVLLSELPTR-HVKPDIVTIGILYDA 427
           +V +   +L AY K  K  K ++V   EL  R H KP++V+   L DA
Sbjct: 408 DVVSYTSLLNAYGKSGKPEKAMKVF--ELMRRNHCKPNLVSYNALIDA 453



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 119/297 (40%), Gaps = 51/297 (17%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  + +IIH YS  G+        N M    L P   +Y+ LI AY  + M  E    
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAY 289
              +K +G  PD ++Y  L+  +  +G  ++    ++  L +R H + + +   A++DAY
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFE--LMRRNHCKPNLVSYNALIDAY 454

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
            + G+L +  +    +   R  ++ ++V                             T L
Sbjct: 455 GSKGLLTEAVEILHEM--ERNGVQPNIVSIC--------------------------TLL 486

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
             C R            I SV+   E   ++ N T  N  + +YL + ++     L   +
Sbjct: 487 AACGRCGQKV------KIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWK---RIGFLFKTVEINTDPLVLAVY 463
            T+ VKPD VT  +L          +G  +M K    +GFL + +++   PL   VY
Sbjct: 541 RTKKVKPDPVTYNVLI---------SGCCKMSKYGEALGFLDEMMDLKI-PLSKEVY 587



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+     EA+    EM    +  S E+Y+S+I  YSK G+  EA     +MK + 
Sbjct: 555 LISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVG 614

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  +I AY   + +++       M+ D   PD I  + L++ F   G   ++ 
Sbjct: 615 CRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVL 674

Query: 265 GTYKSMLTKRMHLRSSTMVAILDA 288
              + M  K++   +S+   ++ A
Sbjct: 675 VLAEFMREKKIPFNNSSFFEMVSA 698


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 25/293 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++   +EA   F+EM+   + P++  Y S+IHG+   GK+ EA    NEM    
Sbjct: 248 IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG 307

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ LI    K     E    L++M   G  P+ +TYN LI+ F   G L    
Sbjct: 308 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAR 367

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM +K           +++ Y     +++  K Y  +L          V K  +V 
Sbjct: 368 ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ---------VGKRPDVK 418

Query: 325 IKNYMFSRLDDLG--DDLASRIGRTEL-----------VWCLRLLSHACLLSHRGIDSVV 371
               + + L   G   D     G  ++           ++   L  + CL        + 
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAM---ELF 475

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +++S  ++ ++   N ++    K    +    L  +LP   ++PD+VT  I+
Sbjct: 476 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIM 528



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 57/106 (53%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G + EA+  F +++ + +K  +E +N +I G  K GK   A     ++ +  L P 
Sbjct: 462 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPD 521

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             TY+ +I  + +     + ++  + M+ +GC+PD ITY  LI+ F
Sbjct: 522 VVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 567



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           +I  LC E  + +A   F  M+     P+   Y +++ G  + G  + AL    EM    
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231

Query: 203 ----MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               +N  P   +Y  +I A  K +  DE     + MK+ G +P  I+Y  LI  F C G
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG 291

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             +  +  +  M+ + +     T   ++D 
Sbjct: 292 KWEEAKRLFNEMVNQGVQPNVVTFNVLIDV 321



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +E A   F+++    L+P +  YN +IH + + G+  +A +   +M++  
Sbjct: 493 LIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNG 552

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +P   TY  LI+ + + K  +++   L MM
Sbjct: 553 CTPDKITYATLIRGFFESKKLEKVVELLHMM 583



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 11/209 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C  G +  A   F  M     +P +  Y  +I+GY K  K  EA+   
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N M ++   P   TY  L+    +     +      +MK+ G   D   Y + +      
Sbjct: 406 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 465

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      +  + +  + L       ++D     G L+   + +++L   +  L+ D+V
Sbjct: 466 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKL--PQEELQPDVV 523

Query: 318 R---------KLAEVYIKNYMFSRLDDLG 337
                     +  +V   N +F +++  G
Sbjct: 524 TYNIMIHEFCRGGQVVKANILFQKMEKNG 552



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 72/170 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + +A + F  M+ + +   L IY   ++G  K G   EA+   N++K  N+   
Sbjct: 427 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 486

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            + ++ LI    K    +      + +  +   PD +TYN++I EF   G + +    ++
Sbjct: 487 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 546

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            M          T   ++  +     L+K+ +    ++     L  +++R
Sbjct: 547 KMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNILR 596



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 6/160 (3%)

Query: 149 LCEEGLMEEAVRAFQEM------EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           LC  G +  A++  QEM       G   KP +  Y+ II    K  + +EA     EMK 
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKV 270

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             ++P   +Y  LI  +     ++E       M   G  P+ +T+N+LI      G +  
Sbjct: 271 QGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 330

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            +   + M+ + +     T  ++++ +   G L+   + +
Sbjct: 331 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 370



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 110/297 (37%), Gaps = 17/297 (5%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A + F  M      P L  +  ++ G +KI  +++     N+M+   +SP   T + L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
                     E    +  +   G  PD +TY  LI+     GL      +  ++L  RM 
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIK-----GLCMEHRISKAALLFTRMQ 193

Query: 277 LRSSTMVAI-----LDAYMNFGMLDKMEKFYKRLLNSRT--PLKEDLVRKLAEVYIKNYM 329
               T  AI     +      G +    K ++ +LN  +   +    V     + I    
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253

Query: 330 FSRLDDLGDDLASRI---GRTELVWCLRLLSHA--CLLSHRGIDSVVREMESAKVRWNVT 384
             R +D   DL   +   G T  V     L H   C         +  EM +  V+ NV 
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           T N+++    K       + LL  +  R + P+++T   L +   +  D   A E++
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 370


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 126/315 (40%), Gaps = 41/315 (13%)

Query: 149 LCEEGLMEEAVRAFQEM---EGF---------------------------------ALKP 172
            C+EG +EEA+R  +EM   EGF                                    P
Sbjct: 275 FCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDP 334

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            +  YNS+I G  K+G+ +EA+  LN+M E + SP + TY+ +I    K    +E     
Sbjct: 335 DIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLA 394

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
            ++   G  PD  TYN LIQ    +         YK M TK  H    T   ++D+    
Sbjct: 395 LVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFR 454

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVW 351
           G L +     K +  S           L + + KN   +  +++ D +  + + R  + +
Sbjct: 455 GKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTY 514

Query: 352 CLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
               L      S R  ++  ++ +M    +R +  T N +L  + K  D K    ++  +
Sbjct: 515 --NTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM 572

Query: 410 PTRHVKPDIVTIGIL 424
            +   +PDIVT G L
Sbjct: 573 ASDGCEPDIVTYGTL 587



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    +I  LC  G ++EA+   +EME      ++  YN++I G+ K  +  EA    
Sbjct: 440 DEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIF 499

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M+   +S  S TY+ LI    K +  +E    +  M ++G  PD  TYN L+  F  A
Sbjct: 500 DQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKA 559

Query: 258 GLLKRMEGTYKSMLT 272
           G +K+     ++M +
Sbjct: 560 GDIKKAADIVQTMAS 574



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  ++ K +E S    N      +I   C+   + EA   F +ME   +  +   YN
Sbjct: 456 KLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYN 515

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G  K  +  EA   +++M    L P   TY+ L+  + K     +    ++ M  D
Sbjct: 516 TLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASD 575

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           GC PD +TY  LI     AG   R+E   K + T +M
Sbjct: 576 GCEPDIVTYGTLIAGLCKAG---RVEAATKLLRTIQM 609



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  +I  L  S R  +  Q+ D    +E  R ++F    ++   C+ G +++A    Q M
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMI-MEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM 572

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
                +P +  Y ++I G  K G+   A  LL   +MK +NL+P +  Y+ +IQA  + K
Sbjct: 573 ASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHA--YNPVIQALFRRK 630

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
              E     + M     +PD +TY ++ +     G
Sbjct: 631 RSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGG 665



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 2/141 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           F KN  R  +  ++FD  +    SR N      +I  LC+   +EEA +   +M    L+
Sbjct: 486 FCKNK-RIAEAEEIFDQMELQGVSR-NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLR 543

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    YNS++  + K G   +A   +  M      P   TY  LI    K    +     
Sbjct: 544 PDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKL 603

Query: 232 LKMMKLDGCSPDHITYNLLIQ 252
           L+ +++ G +     YN +IQ
Sbjct: 604 LRTIQMKGINLTPHAYNPVIQ 624



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            KPS  I+  ++H   K G+F+     L EMK       +D+    I++Y  + +Y+EI 
Sbjct: 85  FKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEIL 144

Query: 230 MCLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             +  M+++ G   +   YN L+        LK +E  + +M+++ +    ST   ++ A
Sbjct: 145 QFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKA 204



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    +  A+   +EME F L P  + + +I+ G+ + G  + A+    +M E  
Sbjct: 201 LIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAG 260

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRM 263
               + T + L+  + K    +E    ++ M L +G  PD  T+N+L+   +  G +K  
Sbjct: 261 CVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHA 320

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                 ML +       T  +++      G +D+  K   +++
Sbjct: 321 LEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMI 363


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G + +A+  F++M+   +   + IYN IIHG     K ++A      + +  + P 
Sbjct: 494 LCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 553

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGLLKRMEGTY 267
             TY+ +I    K     E DM  + MK DGC+PD  TYN+LI+     +GL+  +E   
Sbjct: 554 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE-LI 612

Query: 268 KSMLTKRMHLRSSTMVAILD 287
           + M        SST+  ++D
Sbjct: 613 EEMKVCGFSADSSTIKMVID 632



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC +G  ++  +  +EM G  + P +  ++++I  + K GK  EA    NEM    
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P + TY+ LI  + K     E +    +M   GC PD +TY++LI  +  A  +    
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++ + +K +   + T   ++  +   G L+  ++ ++ +++   P           V 
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP---------PSVV 485

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
               +   L D G+                 L+ A          +  +M+ +++   + 
Sbjct: 486 TYGILLDGLCDNGE-----------------LNKAL--------EIFEKMQKSRMTLGIG 520

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             NII+              L   L  + VKPD+VT  ++
Sbjct: 521 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 560



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 5/314 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K R +      +I  LC +G + EA+     M  +  +P    Y  +++   K G    A
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L    +M+E N+      Y  +I +  K   +D+       M++ G   D +TY+ LI  
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 318

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G         + M+ + +     T  A++D ++  G L + ++ Y  ++       
Sbjct: 319 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 378

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---V 370
                 L + + K       + + D + S+    ++V    L++  C    + +D    +
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC--KAKRVDDGMRL 436

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
            RE+ S  +  N  T N ++L + +       + L  E+ +R V P +VT GIL D    
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 431 GFDGTGALEMWKRI 444
             +   ALE+++++
Sbjct: 497 NGELNKALEIFEKM 510



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 121 QIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           ++ +  ++++ ++KSR    I  +N   II  +C    +++A   F  +    +KP +  
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNI--IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 556

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
           YN +I G  K G  +EA +   +MKE   +P   TY+ LI+A+ G   +   +++ ++ M
Sbjct: 557 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL-IEEM 615

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           K+ G S D  T  ++I   +     +R++ ++  ML+
Sbjct: 616 KVCGFSADSSTIKMVIDMLS----DRRLDKSFLDMLS 648



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G +  A   FQEM    + PS+  Y  ++ G    G+ N+AL    +M++  ++  
Sbjct: 459 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 518

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I         D+       +   G  PD +TYN++I      GL K+   +  
Sbjct: 519 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI-----GGLCKKGSLSEA 573

Query: 269 SMLTKRM 275
            ML ++M
Sbjct: 574 DMLFRKM 580



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 17/396 (4%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     +R++Q   V    K +E + I  + +    +I   C +  +  A          
Sbjct: 104 RLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL 163

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    ++++++G+   G+ +EA+  ++ M EM   P   T   LI          E 
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 223

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   G  PD +TY  ++     +G        ++ M  + +         ++D+
Sbjct: 224 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 283

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G  D     +  +      +K D+V   + +        + DD    L   IGR  
Sbjct: 284 LCKDGSFDDALSLFNEM--EMKGIKADVV-TYSSLIGGLCNDGKWDDGAKMLREMIGRNI 340

Query: 349 LVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           +   +   +   +    G       +  EM +  +  +  T N ++  + K         
Sbjct: 341 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 400

Query: 405 LLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
           +   + ++  +PDIVT  IL +    A+R+  DG          G +  T+  NT  LVL
Sbjct: 401 MFDLMVSKGCEPDIVTYSILINSYCKAKRVD-DGMRLFREISSKGLIPNTITYNT--LVL 457

Query: 461 AVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
                G  L   +E++  +          TY  L+D
Sbjct: 458 GFCQSGK-LNAAKELFQEMVSRGVPPSVVTYGILLD 492


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC  G +++A R  +EM G  ++   + Y  +++ Y KIGK ++A+  L EMK   
Sbjct: 397 ILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRG 456

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-GLLKRM 263
           ++P   +++ + +   +    D+  + L+ MK  GC+P+ ++Y+ +I     A G +  +
Sbjct: 457 INPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEV 516

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           E     M     HL +S    ++  Y   G  D   + +  +L+
Sbjct: 517 EEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLD 560



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 8/203 (3%)

Query: 108 AVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           A++     ++R      VFD  + + + K  ++ + +  II   C+ G++E A   F EM
Sbjct: 222 AILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTT--IIRGYCKMGMIENAKNVFDEM 279

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKM 224
                KP+L  YN++I+G+ K G    A+  +++M E  +  P + TY  LI  Y K   
Sbjct: 280 ---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGE 336

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +E    ++ M    C P+ +TYN +I      G +   +     M    +    +T  +
Sbjct: 337 LEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTS 396

Query: 285 ILDAYMNFGMLDKMEKFYKRLLN 307
           IL      G LD   +  K ++ 
Sbjct: 397 ILKGLCVVGKLDDAARHLKEMVG 419



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 1/162 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C++GLME A++   +M E     P    Y ++I GY K G+  EA+ ++ EM   
Sbjct: 291 MINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSR 350

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N  P   TY+ +I         DE    +  M+L+G   +  T+  +++     G L   
Sbjct: 351 NCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDA 410

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
               K M+   M   +     +++ Y   G  D      K +
Sbjct: 411 ARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEM 452



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC  G ++EA R    M    LK ++  + SI+ G   +GK ++A   L
Sbjct: 355 NVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHL 414

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            EM  + +   +  Y  ++  Y K    D+    LK MK  G +P   ++N + +
Sbjct: 415 KEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFR 469



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 71/174 (40%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           ++ D     E    +      +I   C+ G +EEA++  +EM     +P++  YN+II+G
Sbjct: 306 KIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYG 365

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
               G  +EA   +  M+   L     T+  +++        D+    LK M   G   D
Sbjct: 366 LCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEAD 425

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              Y +++ E+   G         K M ++ ++   S+  A+    +  G  DK
Sbjct: 426 AKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDK 479


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 150/407 (36%), Gaps = 76/407 (18%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           D +W ++  LKNS+   QIP   F +                +I    + G+ E+AV +F
Sbjct: 113 DTYWKILEELKNSNI--QIPPPTFSV----------------LIAAYAKSGMAEKAVESF 154

Query: 163 QEMEGFALKPSLEIYNSIIH-----------------------------------GYSKI 187
            +M+ F  KP +  YNSI+H                                   G  K 
Sbjct: 155 GKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN 214

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK ++AL   +EM +  + P +  Y  ++    + K  D++   L  MK+ GC PD IT 
Sbjct: 215 GKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITC 274

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME----KFYK 303
           N L+  F   G +       +    +   L      +++D        D+++    K +K
Sbjct: 275 NALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
             +     L   L+R   EV + +Y  + L+D+     ++ G +   +C   L       
Sbjct: 335 AGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM-----TQRGLSPDTYCYNALIKG--FC 387

Query: 364 HRGIDSVVR----EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             G+    R    E+          T  I++    +       R + +++      P I+
Sbjct: 388 DVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIM 447

Query: 420 TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKG 466
           T   L D    G    G LE  +    LF  +EI  +P +     +G
Sbjct: 448 TFNALID----GLCKAGELEEARH---LFYKMEIGKNPSLFLRLSQG 487



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE G+++ A+    +M    L P    YN++I G+  +G  ++A     E+ + +
Sbjct: 347 LIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P S TY  LI    +  + DE       M+  GCSP  +T+N LI     AG L+   
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466

Query: 265 GTYKSMLTKR---MHLR-SSTMVAILDAYMNFGMLDKMEKFYKRL 305
             +  M   +   + LR S     ++D    F  +D+ E  ++ L
Sbjct: 467 HLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVL 511



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 52/135 (38%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N +I   +K   F+     L E+K  N+     T+  LI AY K  M ++       MK
Sbjct: 99  HNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMK 158

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GC PD  TYN ++       +       Y  ML    +   +T V +L+     G  D
Sbjct: 159 DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTD 218

Query: 297 KMEKFYKRLLNSRTP 311
              K +  +     P
Sbjct: 219 DALKMFDEMTQKGIP 233


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 160/369 (43%), Gaps = 50/369 (13%)

Query: 77  LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR 136
           LN  + R  +K + P  I +     + +H   V R+LKN    R    +++M        
Sbjct: 106 LNRWVGRFARK-NFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNM-------- 156

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
                   +I +       ++A   F EM+ +  KP +E YN+II+ + + G++  A+  
Sbjct: 157 --------MIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNI 208

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +++M    + P   TY+ LI A G    + E +++C KM + +G  PD +T+N+++  F 
Sbjct: 209 MDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE-NGVGPDLVTHNIILSAFK 267

Query: 256 CAGLLKRMEGTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
                 +    ++  L K  H+R  ++T+  ++   +     DK  + +  +   ++   
Sbjct: 268 SGAQYSKALSYFE--LMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECT 325

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--------RLLSHACLL--- 362
            D+V   + +++ +            +  ++   E  + +         ++S+  L+   
Sbjct: 326 PDVVTFTSIIHLYS------------VCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAY 373

Query: 363 SHRGIDS----VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           + RG+D+       E++    R ++ +   +L AY + +     R +   +    +KP++
Sbjct: 374 AARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNL 433

Query: 419 VTIGILYDA 427
           V+   L DA
Sbjct: 434 VSYNALIDA 442



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 48/314 (15%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E    AF  M    LKP++  YN++I  Y+  G  NEA LF NE+K+    P   +Y
Sbjct: 342 GQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSY 401

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK---------RM 263
             L+ AYG+ +   +       MK +   P+ ++YN LI  +   GLL            
Sbjct: 402 TSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQ 461

Query: 264 EGTYKSMLT--------------------------KRMHLRSSTMVAILDAYMNFGMLDK 297
           EG   ++++                          + + L +    A + + MN G  DK
Sbjct: 462 EGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDK 521

Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA--SRIGRTELVWCLRL 355
               YK +   +  +K D V     V I      ++   G+ L+    I   +L     +
Sbjct: 522 AIGLYKSM--RKKKIKTDSV--TYTVLISG--CCKMSKYGEALSFMEEIMHLKLPLSKEV 575

Query: 356 LSHA-CLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            S A C  S +G     +S    M+S+    +V T   +L AY   ++++    L  E+ 
Sbjct: 576 YSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEME 635

Query: 411 TRHVKPDIVTIGIL 424
              +K D +    L
Sbjct: 636 ASSIKLDTIACAAL 649



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 75/181 (41%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N       IG     G  ++A+  ++ M    +K     Y  +I G  K+ K+ EAL 
Sbjct: 500 KLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALS 559

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           F+ E+  + L    + Y   I AY K     E +    +MK  GC PD +TY  ++  + 
Sbjct: 560 FMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYN 619

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            A   ++    ++ M    + L +    A++ ++   G   ++    + +     P  + 
Sbjct: 620 AAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDT 679

Query: 316 L 316
           +
Sbjct: 680 I 680



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 58/134 (43%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  + SIIH YS  G+        N M    L P   +Y+ LI AY    M +E  + 
Sbjct: 326 PDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLF 385

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              +K +G  PD ++Y  L+  +  +    +    +  M   ++     +  A++DAY +
Sbjct: 386 FNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGS 445

Query: 292 FGMLDKMEKFYKRL 305
            G+L    K  + +
Sbjct: 446 NGLLADAIKILREM 459



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 2/167 (1%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +   ++K++ K +I  +      +I   C+     EA+   +E+    L  S E+Y+S I
Sbjct: 521 KAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAI 580

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             YSK G+  EA    N MK     P   TY  ++ AY   + +++     + M+     
Sbjct: 581 CAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIK 640

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            D I    L++ F   G   R+    +SM  K +    +    ++ A
Sbjct: 641 LDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSA 687


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 138/345 (40%), Gaps = 46/345 (13%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           FQE++    KP+   Y  +I    K G    A+ FL++M +  L P +  Y+ ++   GK
Sbjct: 37  FQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGK 96

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             M DE       MK  GC  D  TY +LI+     G  KR E    ++L   M  R  T
Sbjct: 97  ANMIDEACKLFASMKSMGCPADDYTYAILIRSL---GRCKRDEEA--TLLFDEMEERGCT 151

Query: 282 MVA-----ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYMFSRLDD 335
             A     ++D Y   G          R+ ++   LK+ L + LA + Y  N + + +  
Sbjct: 152 PSAPAYTNVIDIYCKAG----------RIESAMVVLKKMLDKNLAPDDYTLNSLITAV-- 199

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
                 SR GRTEL         AC +  R        M+ + V  N  + N +L    K
Sbjct: 200 ------SRTGRTEL---------ACEIFER--------MKKSGVAVNTVSFNAMLDCCGK 236

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT 455
                     + E+  R +KP+ +T   L +        + A ++ + +     T ++ T
Sbjct: 237 AGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFT 296

Query: 456 DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
              ++  + K   +    E++  +E         TY  LID ++K
Sbjct: 297 YTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVK 341



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 133/320 (41%), Gaps = 15/320 (4%)

Query: 117 SRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            RS +I +V D ++ ++K  S+ N +  + +I  L + G +  A+    +M    L+P  
Sbjct: 25  GRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDT 84

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            +YN ++ G  K    +EA      MK M       TY  LI++ G+ K  +E  +    
Sbjct: 85  LLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDE 144

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+  GC+P    Y  +I  +  AG ++      K ML K +     T+ +++ A    G 
Sbjct: 145 MEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGR 204

Query: 295 LDKMEKFYKRLLNSRTPLKE-------DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
            +   + ++R+  S   +         D   K  +V +       ++  G    S I   
Sbjct: 205 TELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNS-ITFN 263

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
            L+ CL    +A          V++EM SA +  +V T   ++ A+ K  +      +  
Sbjct: 264 TLINCLGRAKYASEAYK-----VLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFG 318

Query: 408 ELPTRHVKPDIVTIGILYDA 427
           ++       ++VT  +L DA
Sbjct: 319 DMEKAGCSANVVTYNLLIDA 338



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           SR+ +     ++++ ++KS   +N  +   ++    + G +  A +   EME   +KP+ 
Sbjct: 200 SRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNS 259

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLK 233
             +N++I+   +    +EA   L EM+   L+P   TY  +I+A+ K   M    +M   
Sbjct: 260 ITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGD 319

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           M K  GCS + +TYNLLI     AG  +     Y  M  K
Sbjct: 320 MEKA-GCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKK 358



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 46/115 (40%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  L       EA +  QEM    L P +  Y  +I  ++K G   +A    
Sbjct: 258 NSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMF 317

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +M++   S    TY+ LI A  K   Y +       MK  G  PD IT  +L Q
Sbjct: 318 GDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQ 372


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA+   QEM+G   +P +  Y +II  Y +  +F +    L+EM+     P S
Sbjct: 299 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 358

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK- 268
            TY  ++ +    K ++E       MK  GC PD + YN LI   A AG L+  E  ++ 
Sbjct: 359 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 418

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            M    + + +ST  +++  Y +    DK  +  K + +S
Sbjct: 419 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 458



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 6/210 (2%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V++M   +E   S  N      I+  L  +   EEA+R    M+    KP    YN +I
Sbjct: 341 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 400

Query: 182 HGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDG 239
           H  ++ G+  EA  +F  EM E+ +S  + TY+ +I  Y  +   D+ I++  +M   + 
Sbjct: 401 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 460

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYMNFGMLDKM 298
           C+PD  TY  L++     G +  +    K M+TK  + L  ST   ++       M +  
Sbjct: 461 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWA 520

Query: 299 EKFYKRLLNSR-TPLKEDLVRKLAEVYIKN 327
              ++ +++   TP     +  L EV  KN
Sbjct: 521 YCLFEEMISQDITPRHRTCLLLLEEVKKKN 550



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I  L   G +EEA R F+ EM    +  +   YNS+I  Y    + ++A+  L EM+  
Sbjct: 399 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 458

Query: 204 NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNLLIQEFACAGLLK 261
           NL +P   TY  L+++  K     E+   LK M+     S D  TY  LIQ    A + +
Sbjct: 459 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 518

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                ++ M+++ +  R  T + +L+      M +  E+ 
Sbjct: 519 WAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERI 558


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 76/143 (53%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L+E+A+  ++EM+  ++      YN+++  Y+K+G+F+EA+    EM+   +     TY+
Sbjct: 369 LLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYN 428

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L+  YG+Y MYDE+    + MK     P+ +TY+ +I  +   G+ +     YK     
Sbjct: 429 ALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKA 488

Query: 274 RMHLRSSTMVAILDAYMNFGMLD 296
           ++ +      +I+D+    G+++
Sbjct: 489 QLEVDVVFYTSIIDSLCKNGLVE 511



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F     +  LC+ G ++ A R  +EM    + P++  Y+++I G +K     +AL   
Sbjct: 318 DAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLY 377

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EMK  ++S    +Y+ ++  Y K   +DE     K M+  G   D +TYN L+  +   
Sbjct: 378 EEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRY 437

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
           G+   +   ++ M    ++  + T   ++D Y   GM  +    YK
Sbjct: 438 GMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYK 483



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++  +   ++G+  + G  +EA+   +EME   +K  +  YN+++ GY + G ++E    
Sbjct: 387 VDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRL 446

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK  N+ P + TY  +I  Y K  M+ E     K  K      D + Y  +I     
Sbjct: 447 FEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCK 506

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            GL++       +M+ K +     T  +I+DA
Sbjct: 507 NGLVESSIMLLIAMIEKGIKPNVVTFNSIIDA 538



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 3/250 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +   +G+ E A +   EM+   +      YN+ +    K G+ + A   L EM    
Sbjct: 290 LLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRR 349

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  +I    K  + ++     + MKL   S D ++YN ++  +A  G      
Sbjct: 350 VWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAI 409

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G  K M +  M     T  A+L  Y  +GM D++ + ++ +              + +VY
Sbjct: 410 GQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVY 469

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWN 382
            K  MF    D+  D        ++V+   ++   C   L    I  ++  +E   ++ N
Sbjct: 470 TKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKG-IKPN 528

Query: 383 VTTANIILLA 392
           V T N I+ A
Sbjct: 529 VVTFNSIIDA 538



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 120/319 (37%), Gaps = 41/319 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK--FNEALLFL 197
           ++   +I      G   +AV  F+ M  + + P+L  YNS+I   +K G+  F+  + F 
Sbjct: 214 YSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAK-GEVDFDVVVKFF 272

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P   TY+ L+       M++     L  M   G   D  TYN  +      
Sbjct: 273 DEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKG 332

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +       + M ++R+     T   ++D      +L+     Y+ +      +     
Sbjct: 333 GQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSY 392

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
             +  +Y K     R D+        IG+                         +EMES 
Sbjct: 393 NTMVGIYAK---LGRFDEA-------IGQ------------------------CKEMESC 418

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            ++ +V T N +L  Y +   +  +R L  E+   ++ P+ +T   + D    G     A
Sbjct: 419 GMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEA 478

Query: 438 LEMWKRIGFLFKTVEINTD 456
           ++++K     FK  ++  D
Sbjct: 479 MDVYKD----FKKAQLEVD 493



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 5/274 (1%)

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           V+ F EM    + P    YNS++   +  G +  A   L+EM +  +   + TY+  +  
Sbjct: 269 VKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDT 328

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             K    D     L+ M      P  +TY+ +I   A A LL+     Y+ M  + + + 
Sbjct: 329 LCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVD 388

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDL 336
             +   ++  Y   G  D+     K +      +K D+V    L   Y +  M+  +  L
Sbjct: 389 RVSYNTMVGIYAKLGRFDEAIGQCKEM--ESCGMKRDVVTYNALLSGYGRYGMYDEVRRL 446

Query: 337 GDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            +++ A  I    L +   +  +      +    V ++ + A++  +V     I+ +  K
Sbjct: 447 FEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCK 506

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
               +   +LL  +  + +KP++VT   + DA R
Sbjct: 507 NGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASR 540


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 10/188 (5%)

Query: 78  NALIQRL--NKKVS---CPLQILQHDGDWTKDHFWAVI--RFLKNSSRSRQIPQVFDMWK 130
           N LIQ L  NKKV    C  Q+L   G       + ++     KN   ++ + ++ +  +
Sbjct: 363 NMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKAL-RILEEAE 421

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N E + ++ F    ++  LC++G++E+AV    +M+    K +  ++NS+I+GY +  K 
Sbjct: 422 N-EGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKL 480

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            EA+  L EMK  + +P   +Y+ +I    K + + +  + LK M  +G  PD ITY+LL
Sbjct: 481 EEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLL 540

Query: 251 IQEFACAG 258
           I    C G
Sbjct: 541 IDGL-CRG 547



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 131/303 (43%), Gaps = 12/303 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++E++  +  M+     P L  ++S+IHG SK G FN A     EM E  
Sbjct: 261 MINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESG 320

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL--KR 262
           LSP   TY+ ++    +    ++      +M  + C  + ++YN+LIQ     GLL  K+
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQ-----GLLDNKK 374

Query: 263 MEGT--YKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +E    Y  +L +R +   S+T   +++     G L+K  +  +   N    L       
Sbjct: 375 VEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSS 434

Query: 320 LAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           +     K  M  +  +L   +  +R      V+   +  +          SV+REM+S  
Sbjct: 435 MVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKD 494

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
               V + N I+    K + F    + L E+    +KPD++T  +L D    G     AL
Sbjct: 495 CAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMAL 554

Query: 439 EMW 441
            +W
Sbjct: 555 NLW 557



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 9/183 (4%)

Query: 156 EEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++A+  FQ M + F   P +  +NS+++ + +  ++ EA LF    +   +SP   TY+ 
Sbjct: 95  DQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNI 154

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI+   K + +++    L  M  +G +PD ++Y  LI   A +G L      +  M  + 
Sbjct: 155 LIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRG 214

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           ++        ++D ++  G   K  + +KRLL       E  V    E Y  N M + L 
Sbjct: 215 VNPDVMCYNILIDGFLRKGDFVKANEIWKRLLT------ESSVYPSVETY--NIMINGLC 266

Query: 335 DLG 337
            LG
Sbjct: 267 KLG 269



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 2/172 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G + +A+R  +E E          Y+S++HG  K G   +A+  +++MK+  
Sbjct: 400 LINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNR 459

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               S  ++ LI  Y +    +E    L+ MK   C+P  ++YN +I     A       
Sbjct: 460 RKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAY 519

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            + K ML + +     T   ++D       +D     + + +N R  LK DL
Sbjct: 520 LSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKR--LKPDL 569



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS+E YN +I+G  K+GK +E++   N MK+   SP   T+  +I    K   ++  +  
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            + M   G SPD  TYN ++      G L +
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNK 343



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 37/174 (21%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           + +  +  M KN  K   + FNS  +I        +EEA+   +EM+     P++  YN+
Sbjct: 447 QAVELIHQMKKNRRKLNSHVFNS--LINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNT 504

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD------------- 226
           II+G  K  +F++A L L EM E  L P   TY  LI    + +  D             
Sbjct: 505 IINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKR 564

Query: 227 -------------------EIDMCLKM---MKLDGCSPDHITYNLLIQEFACAG 258
                              ++D+ L++   M+   C PD +T+N +++    AG
Sbjct: 565 LKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAG 618


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 93  QILQHDGDWTKD--HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC 150
           ++L+ D   + D   F  +I  L     + +  Q+ +  +   K  ++EF+   +I  LC
Sbjct: 393 ELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGK-ELDEFSYSSMISGLC 451

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++G +++AV+ ++++   + KP+  IYN++I+G+ +  KF++A+   ++M E + SP + 
Sbjct: 452 KDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTI 511

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           TY+ LI    K + Y E     + M   GC  D  TY  LI+
Sbjct: 512 TYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIR 553



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 122 IPQVFDMWKNIEKS---RINEFNSQKIIGMLCEEG-------LMEEAVRAFQEMEGFALK 171
           + +  D+W+ +EK      +      +I  LCE+G       ++EEA  + +E++ F+  
Sbjct: 385 VDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFS-- 442

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
                Y+S+I G  K G+ ++A+    ++   +  P S  Y+ LI  + +   + +    
Sbjct: 443 -----YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRV 497

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
              M  + CSP  ITYN LI      GL K  +    S  T+ M
Sbjct: 498 YSQMAENDCSPTTITYNTLIH-----GLCKAEKYLEASRFTREM 536



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 7/232 (3%)

Query: 127 DMWKNIEKSRINEFNSQK-----IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           D  K  EK  ++ F         +I   C+     +A+R + +M      P+   YN++I
Sbjct: 458 DAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLI 517

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           HG  K  K+ EA  F  EM E       +TY  LI+   + K  D        +   G  
Sbjct: 518 HGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQ 577

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-STMVAILDAYMNFGMLDKMEK 300
            D + +N+LI     AG +         M  K     +  T   ++D +   G  DK   
Sbjct: 578 TDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAAS 637

Query: 301 FYKRLL-NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            +  +L N   P       ++  +   N     +  L + LAS I  T + W
Sbjct: 638 LWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITW 689



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 3/174 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++G     G  E+A+R ++++       P+L  YN ++ G  K+G F EA      M   
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN 294

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           N  P   TY  +I    +    D        M   G  PD + YN L++ F  AG +   
Sbjct: 295 NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEA 354

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              + SM    +   +S  + +L    + GM+DK    ++ LL     L  D+V
Sbjct: 355 WKFWDSMSVSGIRNVTSYNI-MLKGLFDGGMVDKATDLWE-LLEKDDSLSPDMV 406



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 2/162 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    ++ A R + EM    L P + IYNS++ G+   G+  EA  F + M    
Sbjct: 306 MIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +     +Y+ +++      M D+  D+   + K D  SPD +T++ +I      G   + 
Sbjct: 366 IR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKS 424

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
               +   T    L   +  +++      G LD   K Y+++
Sbjct: 425 LQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKI 466



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYD 213
           ++ A+    EM  + ++P    YN+++ G  + G+F +A+    ++ ++   SP   TY+
Sbjct: 210 LDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYN 269

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            ++    K  M+ E     + M  +   PD ITY  +I     +  +      Y  M+  
Sbjct: 270 VMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKT 329

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +        ++L  + + G + +  KF+  +
Sbjct: 330 GLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSM 361



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEM-EGF 168
            ++   R ++I     +W  I +K    +     I I  LC  G ++EA +   EM E  
Sbjct: 551 LIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKN 610

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
              P++  YN+++ G+ + G F++A      + E  L P   +Y+  I+         E 
Sbjct: 611 NCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEG 670

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQ 252
              L  M   G  P  IT+N+L++
Sbjct: 671 VQLLNEMLASGIIPTAITWNILVR 694



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++R L  SS SR +P++  +   +  + R +E  +  ++       + + A+ AF+ +  
Sbjct: 54  LLRRLATSSPSR-LPRLLGILPRLRHRPRFSESAALVVLSAFSRALMPDAALAAFRRLPS 112

Query: 168 F-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE----MNLSPQSDTYDGLIQAYGKY 222
           F    P +  +N+++  + +  +F++A  F   +        ++P   TY+ ++++    
Sbjct: 113 FLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVR 172

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              D        ++  G +PD ITY+ L+  F
Sbjct: 173 GDLDRAVTLFDSLRCRGLAPDRITYSTLMSGF 204


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           + +M  N     +  FN+  +I      G +E+      EM+   LKP++  Y SI++ +
Sbjct: 248 LMEMQDNGVNPTVETFNT--LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K GK  EA+  L++M   ++ P +  Y+ +I AY ++   D+  + ++ MK +G SP  
Sbjct: 306 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 365

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYNLLI+       +   E    S+   R+   + +   ++ A    G +DK     +R
Sbjct: 366 VTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQR 425

Query: 305 L 305
           +
Sbjct: 426 M 426



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +E A   F +M+   +KP    YN++I+G  K  +   A   L EM++  
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 255

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +T++ LI AYG+    ++  + L  M+ +G  P+ ++Y  ++  F   G +    
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                M  K +   +    AI+DAY+  G  D+
Sbjct: 316 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ 348



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  +   G   +AV  F EM   A+ P+   YN++I G+ K G         
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 73

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P + TY+ L+    +     E    L  M      PD  TY++L    +  
Sbjct: 74  DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 133

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K M   +   L   + +   T   +L+     G +   E+  + L+N+       + 
Sbjct: 134 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 193

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
             L   Y +             + SR  + + +    L++  C          ++ EM+ 
Sbjct: 194 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 253

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V   V T N ++ AY +    +   ++LSE+    +KP++V+ G + +A
Sbjct: 254 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNA 304



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 5/272 (1%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           A  P+   YN +I G  + G+  +A+   +EM E  + P   TY+ +I  + K    +  
Sbjct: 10  APPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAG 69

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 M   G  P+ ITYN+L+     AG +         M +++M     T   + D 
Sbjct: 70  FRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG 129

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRT 347
               G    M   + + L +   + +     L     K+   S  +++   L  + +  T
Sbjct: 130 LSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 189

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
            +++   +  +       G  S   +M+S  ++ +  T N ++    K +   + + LL 
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 249

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           E+    V P + T   L DA    +  TG LE
Sbjct: 250 EMQDNGVNPTVETFNTLIDA----YGRTGQLE 277



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  + EA      +    L P    YN++I      G  ++AL     M +  
Sbjct: 371 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 430

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY  LI   G     +E++   + M  +   P +  +N++++ ++  G   + E
Sbjct: 431 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 490

Query: 265 GTYKSMLTKR 274
              K ML KR
Sbjct: 491 DLRKEMLQKR 500


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           + +M  N     +  FN+  +I      G +E+      EM+   LKP++  Y SI++ +
Sbjct: 296 LMEMQDNGVNPTVETFNT--LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K GK  EA+  L++M   ++ P +  Y+ +I AY ++   D+  + ++ MK +G SP  
Sbjct: 354 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 413

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYNLLI+       +   E    S+   R+   + +   ++ A    G +DK     +R
Sbjct: 414 VTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQR 473

Query: 305 L 305
           +
Sbjct: 474 M 474



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +E A   F +M+   +KP    YN++I+G  K  +   A   L EM++  
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P  +T++ LI AYG+    ++  + L  M+ +G  P+ ++Y  ++  F   G +    
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                M  K +   +    AI+DAY+  G  D+
Sbjct: 364 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ 396



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 1/291 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   +I  +   G   +AV  F EM   A+ P+   YN++I G+ K G         
Sbjct: 62  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 121

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P + TY+ L+    +     E    L  M      PD  TY++L    +  
Sbjct: 122 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 181

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  K M   +   L   + +   T   +L+     G +   E+  + L+N+       + 
Sbjct: 182 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 241

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
             L   Y +             + SR  + + +    L++  C          ++ EM+ 
Sbjct: 242 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 301

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             V   V T N ++ AY +    +   ++LSE+    +KP++V+ G + +A
Sbjct: 302 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNA 352



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 120/307 (39%), Gaps = 6/307 (1%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           +R + F   K +      G + EAV   + M    A  P+   YN +I G  + G+  +A
Sbjct: 23  ARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA 82

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +   +EM E  + P   TY+ +I  + K    +        M   G  P+ ITYN+L+  
Sbjct: 83  VEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 142

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
              AG +         M +++M     T   + D     G    M   + + L +   + 
Sbjct: 143 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 202

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           +     L     K+   S  +++   L  + +  T +++   +  +       G  S   
Sbjct: 203 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 262

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           +M+S  ++ +  T N ++    K +   + + LL E+    V P + T   L DA    +
Sbjct: 263 QMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA----Y 318

Query: 433 DGTGALE 439
             TG LE
Sbjct: 319 GRTGQLE 325



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +  + EA      +    L P    YN++I      G  ++AL     M +  
Sbjct: 419 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 478

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY  LI   G     +E++   + M  +   P +  +N++++ ++  G   + E
Sbjct: 479 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 538

Query: 265 GTYKSMLTKR 274
              K ML KR
Sbjct: 539 DLRKEMLQKR 548


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 37/299 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++ V AF+ ++    KPS   Y  ++  Y++ G  + A      M+   + P S  Y  L
Sbjct: 292 QDVVSAFERIK----KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSL 347

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I AY   +  +E   C + MK +G     +TY++++  FA  G     +  +K    +  
Sbjct: 348 IHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHS 407

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKN-----Y 328
           H+ +     ++ AY     +D+ E   + +         D+   + + Y  + N      
Sbjct: 408 HMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLT 467

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--------HRGIDSVVREMESAKVR 380
           +F RL + G             +   ++S+ CL++         + ++ V + MESA ++
Sbjct: 468 VFERLKECG-------------FAPSVVSYGCLINLYAKVGKISKALE-VSKMMESAGIK 513

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            N+ T ++++  +LK+KD+ +   +  ++    +KPD+V    LY+     F G G ++
Sbjct: 514 HNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVV----LYNNIIRAFCGMGTMD 568



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 134/370 (36%), Gaps = 78/370 (21%)

Query: 127 DMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           D W    K R +  N+     +I   C+   M++A    +EMEG  +   ++IY++++ G
Sbjct: 396 DRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDG 455

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL------ 237
           Y+ +G   + L     +KE   +P   +Y  LI  Y K     +     KMM+       
Sbjct: 456 YTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHN 515

Query: 238 -----------------------------DGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
                                        DG  PD + YN +I+ F   G + R     K
Sbjct: 516 MKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVK 575

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEK-----------------FYKR 304
            M  +R    S T + I+  +   G       + D M +                   KR
Sbjct: 576 EMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKR 635

Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRL----DDLGDDLASRIGRTEL--------VWC 352
            +     + +++   LA V    + ++ +      LGD   +    T+L        V+ 
Sbjct: 636 QMEKAIEILDEMA--LAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYT 693

Query: 353 LRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
              L  AC  S R     +V +EM +  +  N    NI++  + +  D      L+ ++ 
Sbjct: 694 YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 753

Query: 411 TRHVKPDIVT 420
              VKPDI T
Sbjct: 754 QGGVKPDIHT 763



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 105/280 (37%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C  G M+ A+   +EM+    +P+   +  IIHG+++ G+   AL   + M+   
Sbjct: 557 IIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSG 616

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T++ LI    + +  ++    L  M L G SP+  TY  ++  +A  G   +  
Sbjct: 617 CIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAF 676

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  +  + + L   T  A+L A    G +       K +     P            +
Sbjct: 677 EYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN---------TF 727

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           + N +       GD           VW                  ++++M+   V+ ++ 
Sbjct: 728 VYNILIDGWARRGD-----------VW--------------EAADLMQQMKQGGVKPDIH 762

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T    + A  K  D      ++ E+ T  VKP++ T   L
Sbjct: 763 TYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTL 802



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 2/142 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            LK   +S ++     + K +    I  N F    +I      G + EA    Q+M+   
Sbjct: 697 LLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGG 756

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           +KP +  Y S I+   K G    A   + EM+   + P   TY  LI  + +  + ++  
Sbjct: 757 VKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKAL 816

Query: 230 MCLKMMKLDGCSPDHITYNLLI 251
            C + MKL G  PD   Y+ L+
Sbjct: 817 RCFQEMKLAGLKPDKAVYHCLM 838



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  +++ +  + ++   C+ G M+ A+   +EM    +  +  +YN +I G+++ G   E
Sbjct: 685 EGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWE 744

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A   + +MK+  + P   TY   I A  K          ++ M+  G  P+  TY  LI 
Sbjct: 745 AADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIH 804

Query: 253 EFACAGLLKRMEGTYKSM 270
            +A A L ++    ++ M
Sbjct: 805 GWARASLPEKALRCFQEM 822



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I+ + S   I   C+ G M  A +  +EME   +KP+++ Y ++IHG+++     +A
Sbjct: 758 KPDIHTYTS--FINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKA 815

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQA 218
           L    EMK   L P    Y  L+ A
Sbjct: 816 LRCFQEMKLAGLKPDKAVYHCLMTA 840



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 109 VIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +IR F    +  R I  V +M K  E+ R        II      G M+ A+  F  M  
Sbjct: 557 IIRAFCGMGTMDRAICMVKEMQK--ERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRR 614

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P++  +N++I G  +  +  +A+  L+EM    +SP   TY  ++  Y       +
Sbjct: 615 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGK 674

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                  ++ +G   D  TY  L++    +G ++      K M  + +   +     ++D
Sbjct: 675 AFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILID 734

Query: 288 AYMNFG 293
            +   G
Sbjct: 735 GWARRG 740


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+     I  LC+ GL+EEA   F+ ++   +K +  IY+++I GY K+GK ++    L
Sbjct: 483 DEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLL 542

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M      P S TY+ LI  Y K K + E  + + +M      P   TY +LI      
Sbjct: 543 DKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKD 602

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
               +    +  ML+   H       A + AY + G L   E
Sbjct: 603 DEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAE 644



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 1/283 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G   EA+  F+EM     +P++  Y  +I    +   F++A   LN M E  
Sbjct: 315 IIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI  Y K  +       L +M+ + CSP+  TYN LI  F     + +  
Sbjct: 375 LIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAM 434

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                ML +++     T   ++      G L    K    +  S     E       +  
Sbjct: 435 SLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494

Query: 325 IKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
            K  +      L + L  + I   E+++   +  +  +        ++ +M SA    N 
Sbjct: 495 CKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNS 554

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            T N ++  Y K K+FK  R+L+  +  R ++P   T  IL D
Sbjct: 555 ITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILID 597



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 2/201 (0%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W    F+    +   + +   +++++++  I  NE     +I   C+ G + +      +
Sbjct: 485 WTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDK 544

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M      P+   YNS+I GY K   F EA L ++ M + ++ P +DTY  LI    K   
Sbjct: 545 MLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDE 604

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +D+       M   G  PD   Y   I  +   G LK  E     M  K +   +     
Sbjct: 605 FDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL 664

Query: 285 ILDAYMNFGMLDKMEKFYKRL 305
            +DAY  FG +D      KR+
Sbjct: 665 FIDAYGRFGSIDGAFGILKRM 685



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 113/303 (37%), Gaps = 5/303 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++GL   A+     ME     P+   YN +I G+ +    ++A+  L++M E  
Sbjct: 385 LIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ LI    K          L +M   G  PD  TY++ I      GL++   
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++S+  K +         ++D Y   G +        ++L++           L + Y
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGY 564

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRW 381
            K   F     L D +  R           L+ +  LL     D    +  +M S     
Sbjct: 565 CKEKNFKEARLLVDIMIKRDIEPAADTYTILIDN--LLKDDEFDQAHDMFDQMLSTGSHP 622

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           +V      + AY      K   VL+ ++  + + PD +   +  DA        GA  + 
Sbjct: 623 DVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGIL 682

Query: 442 KRI 444
           KR+
Sbjct: 683 KRM 685



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 140/334 (41%), Gaps = 31/334 (9%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ------KIIGMLCEEGLM-EEAVRAF 162
           I  +K++  S     V +M +++ + R++ F  +       ++ ML    LM +E    +
Sbjct: 134 ILMIKSTDSSENALFVLEMLRSMNR-RVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVY 192

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            EM    + P++   N++++GY K+G   EA L+++++ +  LS  + TY  LI  Y + 
Sbjct: 193 LEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRN 252

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
           K  D  +     M   GC  + ++Y  LI  F  A  +      +  M          T 
Sbjct: 253 KNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTY 312

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY---MFSRLDDLGDD 339
             I+ A    G   +    +K           ++  K  +  +  Y   + S  +D   D
Sbjct: 313 TVIIFALCQLGRKTEALNMFK-----------EMTEKHCQPNVHTYTVLICSLCEDSNFD 361

Query: 340 LASRI--GRTELVWCLRLLSHACLLS---HRGIDSVVRE----MESAKVRWNVTTANIIL 390
            A +I  G  E      ++++  L+     +G+ +   E    MES     N  T N ++
Sbjct: 362 DAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELI 421

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           L + + K+      LL ++  R ++P++VT  IL
Sbjct: 422 LGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNIL 455



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L ++   ++A   F +M      P + IY + IH Y   G+  +A + + +M    
Sbjct: 595 LIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKG 654

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + P +  Y   I AYG++   D     LK M   GC P + TY+ LI+  + A
Sbjct: 655 IMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNA 707



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K I  LC+ G +E A R F  M+     P+ +IYNS++    ++G + EA+ +L+ M E 
Sbjct: 763 KFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIEN 822

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDE 227
              P  D+   L+       +YDE
Sbjct: 823 RHLPHLDSCKLLLCG-----LYDE 841


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 78  NALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI 137
           N +I  L K  +    I    G WT+    A +  L NS        +FD+  N +K   
Sbjct: 475 NTMINGLCKAGNLDKAIEIVSGMWTRGS--ASLGNLGNS-----FIDLFDIRNNGKKCLP 527

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +      IIG LC+ G ++EA +   EM G  L P   I+++ I+ Y K GK + A   L
Sbjct: 528 DSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVL 587

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM++   +    TY+ LIQ  G      EI   +  MK  G  P+  TYN +I   +  
Sbjct: 588 KEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEG 647

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM---NFGMLDKM 298
           G LK        ML K +     T   ++ A+    +FG   ++
Sbjct: 648 GKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQEL 691



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 125/315 (39%), Gaps = 41/315 (13%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           S +  ++  V  ++K++  +R+    +    +I  LCE G +E A   F +M     KP+
Sbjct: 128 SLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
                 ++ GY + G  +  +  L+EM+     P    Y+ +I +        E +  ++
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE 247

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRSSTMVA---ILDAY 289
            M+  G SPD +T+N  I     +G +      ++ M + + M L     V    +L+ +
Sbjct: 248 KMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGF 307

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
            + GM ++    +  + NS T            + +++Y                     
Sbjct: 308 CSEGMFEEARAIFDSMKNSET------------LSLRSYN-------------------- 335

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           +W L L+    LL       ++ EM    ++ N+ + NI++    K   F   R +L  +
Sbjct: 336 IWMLGLVRSGKLLEAH---LILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLM 392

Query: 410 PTRHVKPDIVTIGIL 424
               V PD VT   L
Sbjct: 393 RESGVAPDTVTYSTL 407



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +FD  KN E   +  +N   ++G L   G + EA     EM    +KP+L  YN ++HG 
Sbjct: 319 IFDSMKNSETLSLRSYNIW-MLG-LVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGL 376

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G F++A   L  M+E  ++P + TY  L+  Y +     E +  L+ M   GC P+ 
Sbjct: 377 CKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNM 436

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            T N+L+      G     E   + M  +   L + T   +++     G LDK
Sbjct: 437 YTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDK 489



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 162/412 (39%), Gaps = 43/412 (10%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           KNI   + N ++   ++  LC+ G+  +A      M    + P    Y++++HGY + GK
Sbjct: 360 KNI---KPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGK 416

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA   L EM ++   P   T + L+ +  K     E +  L+MM   G   D++T N 
Sbjct: 417 ILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNT 476

Query: 250 LIQEFACAGLLKRMEGTYKSMLT-----------------------KRMHLRSSTMVAIL 286
           +I     AG L +       M T                       K+    S T   I+
Sbjct: 477 MINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATII 536

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDDLGD 338
                 G +D+ +K    ++  +  L  D +  + + +I NY         F  L ++  
Sbjct: 537 GGLCKVGRVDEAKKKLLEMIGKK--LSPDSL--IFDTFIYNYCKQGKLSSAFRVLKEMEK 592

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
              ++  RT       L S   +    G+   + EM+   +  NV T N I+    +   
Sbjct: 593 KGCNKSLRTYNSLIQGLGSENQIFEIYGL---MDEMKERGIFPNVYTYNNIISCLSEGGK 649

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
            K    LL E+  + + P+I T  IL  A     D   A E+++    L    E     +
Sbjct: 650 LKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFM 709

Query: 459 VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
              +   G  L+  +E++ +    S   K + Y++LI+ + K +GK  D +F
Sbjct: 710 FNELLAGGETLK-AKELFEAALDRSLALKNFLYRDLIEKLCK-DGKLDDASF 759



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           F+ N  +  ++   F + K +EK   N+    +NS  +I  L  E  + E      EM+ 
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNS--LIQGLGSENQIFEIYGLMDEMKE 627

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P++  YN+II   S+ GK  +A   L+EM +  +SP   T+  LI A+ K   +  
Sbjct: 628 RGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGA 687

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + + L  C      Y+ +  E    G   + +  +++ L + + L++     +++
Sbjct: 688 AQELFE-IALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIE 746

Query: 288 AYMNFGMLD 296
                G LD
Sbjct: 747 KLCKDGKLD 755


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G + +A+  F++M+   +   + IYN IIHG     K ++A      + +  + P 
Sbjct: 465 LCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGLLKRMEGTY 267
             TY+ +I    K     E DM  + MK DGC+PD  TYN+LI+     +GL+  +E   
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE-LI 583

Query: 268 KSMLTKRMHLRSSTMVAILD 287
           + M        SST+  ++D
Sbjct: 584 EEMKVCGFSADSSTIKMVID 603



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 115/282 (40%), Gaps = 34/282 (12%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             +IG LC +G  ++  +  +EM G  + P +  ++++I  + K GK  EA    NEM  
Sbjct: 284 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             ++P + TY+ LI  + K     E +    +M   GC PD +TY++LI  +  A  +  
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
               ++ + +K +   + T   ++  +   G L+  ++ ++ +++   P           
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP---------PS 454

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           V     +   L D G+                 L+ A          +  +M+ +++   
Sbjct: 455 VVTYGILLDGLCDNGE-----------------LNKAL--------EIFEKMQKSRMTLG 489

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +   NII+              L   L  + VKPD+VT  ++
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 5/314 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K R +      +I  LC +G + EA+     M  +  +P    Y  +++   K G    A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           L    +M+E N+      Y  +I +  K   +D+       M++ G   D +TY+ LI  
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G         + M+ + +     T  A++D ++  G L + ++ Y  ++       
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---V 370
                 L + + K       + + D + S+    ++V    L++  C    + +D    +
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC--KAKRVDDGMRL 407

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
            RE+ S  +  N  T N ++L + +       + L  E+ +R V P +VT GIL D    
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467

Query: 431 GFDGTGALEMWKRI 444
             +   ALE+++++
Sbjct: 468 NGELNKALEIFEKM 481



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 121 QIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           ++ +  ++++ ++KSR    I  +N   II  +C    +++A   F  +    +KP +  
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNI--IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
           YN +I G  K G  +EA +   +MKE   +P   TY+ LI+A+ G   +   +++ ++ M
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL-IEEM 586

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           K+ G S D  T  ++I   +     +R++ ++  ML+
Sbjct: 587 KVCGFSADSSTIKMVIDMLS----DRRLDKSFLDMLS 619



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G +  A   FQEM    + PS+  Y  ++ G    G+ N+AL    +M++  ++  
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I         D+       +   G  PD +TYN++I      GL K+   +  
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI-----GGLCKKGSLSEA 544

Query: 269 SMLTKRM 275
            ML ++M
Sbjct: 545 DMLFRKM 551



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 17/396 (4%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     +R++Q   V    K +E + I  + +    +I   C +  +  A          
Sbjct: 75  RLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL 134

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P    ++++++G+   G+ +EA+  ++ M EM   P   T   LI          E 
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + +  M   G  PD +TY  ++     +G        ++ M  + +         ++D+
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G  D     +  +      +K D+V   + +        + DD    L   IGR  
Sbjct: 255 LCKDGSFDDALSLFNEM--EMKGIKADVV-TYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311

Query: 349 LVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           +   +   +   +    G       +  EM +  +  +  T N ++  + K         
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371

Query: 405 LLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
           +   + ++  +PDIVT  IL +    A+R+  DG          G +  T+  NT  LVL
Sbjct: 372 MFDLMVSKGCEPDIVTYSILINSYCKAKRVD-DGMRLFREISSKGLIPNTITYNT--LVL 428

Query: 461 AVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
                G  L   +E++  +          TY  L+D
Sbjct: 429 GFCQSGK-LNAAKELFQEMVSRGVPPSVVTYGILLD 463


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 6/218 (2%)

Query: 92  LQILQHDG-DWTKD--HFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIG 147
           LQ++  DG D   D   +  VI  F K     +      +M        +  +NS  II 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNS--IIA 242

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL +M    + P
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY+ L+    K     E       M   G  P+  TY  L+Q +A  G L  M G  
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             M+   +H        ++ AY   G +D+    + ++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP++  Y+++I GY   GK +EA   L  
Sbjct: 482 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M  + + P   TY+ LI  Y K    ++  +  + M+  G SPD ITYN+++Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 160/394 (40%), Gaps = 50/394 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR-TP--------------------LKEDLVRKLAE-VYIK 326
               G ++   ++++++++ R +P                     KE ++  L   + + 
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLD 478

Query: 327 NYMFSRLDDLGD------------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR- 372
              F+ + D               DL  RIG +  ++    L+   CL     +D   + 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK--MDEATKL 536

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYD 426
              M S  ++ +  T N ++  Y K+   +   VL  E+ +  V PDI+T  I    L+ 
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            RR       A E++  I      +E++T  ++L
Sbjct: 597 TRRT----AAAKELYVGITESGTQLELSTYNIIL 626



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 128/287 (44%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+R F++M    L P   +YNS+IH      K+++A   + EM +  
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  P+ ITY+ LI  +  AG +    
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEAT 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               SM++  M     T   +++ Y     ++     ++ + +S   +  D++     + 
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS--GVSPDIITY--NII 590

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVREMES---A 377
           ++    +R      +L   +G TE    L L ++  +L     +   D  +R  ++    
Sbjct: 591 LQGLFQTRRTAAAKEL--YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    T NI++ A LK+      + L + L    + PD+ T  ++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC+E   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY+ +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +        ++ Y            A++    E+              H  +D +VR   
Sbjct: 339 ITTY--GTLLQGY------------ATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ +A   + EM    + P++  Y ++IHG+  +G   EA   LNEMK  N
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T++ LI A  K    DE     + MK     P+ +TY  LI        L+R  
Sbjct: 267 INPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 326

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              K M  + +     +   +LDA    G L+  ++F++ LL
Sbjct: 327 ALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLL 368



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++++ +   +I  LC+ G  +   R  +++EG ++KP L +Y +IIH   K     +A  
Sbjct: 163 QLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACD 222

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM    +SP   TY  LI  +       E    L  MKL   +PD  T+N+LI   A
Sbjct: 223 LYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALA 282

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             G +      ++ M  K M     T  +++D 
Sbjct: 283 KEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDG 315



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G ++EA     EM+   + P +  +N +I   +K GK +EA+   
Sbjct: 235 NVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLF 294

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            EMK  N+ P   TY  LI    K + +   I +C K MK  G  P+  +Y +L+     
Sbjct: 295 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC-KKMKEQGIQPNVYSYTILLDALCK 353

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            G L+  +  ++ +L K  HL   T   +++     G+ 
Sbjct: 354 GGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 392



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 23/248 (9%)

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +A+   N M  M   P +  ++ ++ +  K K Y  +    K  + +G +PD  T ++LI
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             F     +      + ++L +  H  + T+  ++      G + +   F+ +++     
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQ 163

Query: 312 LKE-------DLVRKLAEVYIKNYMFSRLD--DLGDDLASRIGRTELVWCL---RLLSHA 359
           L +       + + K  E      +  +L+   +  DL   +  T ++ CL   +LL  A
Sbjct: 164 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDL---VMYTTIIHCLCKNKLLGDA 220

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
           C         +  EM    +  NV T   ++  +  M + K    LL+E+  +++ PD+ 
Sbjct: 221 C--------DLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVY 272

Query: 420 TIGILYDA 427
           T  IL DA
Sbjct: 273 TFNILIDA 280



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 7/275 (2%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +AV +F  M      P   ++N+I+    K  ++   +    + +   ++P   T   LI
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             +               +   G  P+ IT N LI+     G +KR    +  ++ +   
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQ 163

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLD 334
           L   +   +++     G    + +  ++L      +K DLV    +     KN +     
Sbjct: 164 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHS--VKPDLVMYTTIIHCLCKNKLLGDAC 221

Query: 335 DLGDDLASRIGRTELVWCLRLLSHA-CLLSH-RGIDSVVREMESAKVRWNVTTANIILLA 392
           DL  ++  + G +  V+    L H  C++ + +   S++ EM+   +  +V T NI++ A
Sbjct: 222 DLYSEMIVK-GISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 280

Query: 393 YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             K         L  E+  +++ P+IVT   L D 
Sbjct: 281 LAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDG 315


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 159/382 (41%), Gaps = 31/382 (8%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ + +  ++  LC  G +EE  R  ++  G    P +  YN II GY K G    A   
Sbjct: 199 VDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRT 258

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L E+K   + P  +TY  LI  + K   ++ +D  L  M   G + +   +N +I     
Sbjct: 259 LKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFK 318

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR------LLN--S 308
            GL+ +   T + M         +T   +++     G + + ++F ++      L N  S
Sbjct: 319 YGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFS 378

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
            TPL     ++   V     +F R+ ++G+       + +LV     +    +     + 
Sbjct: 379 YTPLMHAYCKQGDYVKAAGMLF-RIAEIGE-------KPDLVSYGAFIHGVVVHGEIDVA 430

Query: 369 SVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +VRE M    V  +    N+++    K   F  +++LLSE+  R+V+PD+     L D 
Sbjct: 431 LMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMD- 489

Query: 428 RRIGFDGTGALEMWKRIGFLFKT-VEINTDPLVLA----VYGKGHFLRYCEEV--YSSLE 480
              GF   G L+   +I   FK  +    DP ++     + G   F +  + +   + ++
Sbjct: 490 ---GFIRNGELDEAIKI---FKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMK 543

Query: 481 PYSREKKRWTYQNLIDLVIKHN 502
                   +TY  +ID  +K +
Sbjct: 544 NVHHAPDEYTYSTVIDGYVKQH 565



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA++ F+ +    + P +  YN++I G+ K GK  +AL  LN+MK ++ +P   TY
Sbjct: 495 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTY 554

Query: 213 DGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I  Y K + M   + M  +MMK     P+ ITY  LI  F     + R E  ++ M 
Sbjct: 555 STVIDGYVKQHDMSSALKMFGQMMK-HKFKPNVITYTSLINGFCKKADMIRAEKVFRGMK 613

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           +  +     T   ++  +   G  +K    ++ +L +  P
Sbjct: 614 SFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCP 653



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    +I    ++  M  A++ F +M     KP++  Y S+I+G+ K      A    
Sbjct: 550 DEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVF 609

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             MK  +L P   TY  L+  + K    ++     ++M ++GC P+  T++ LI
Sbjct: 610 RGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLI 663



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+ ++ +   ++K I +  ++        +I   C+ G M +A+    +M+     P   
Sbjct: 493 RNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEY 552

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+++I GY K    + AL    +M +    P   TY  LI  + K       +   + M
Sbjct: 553 TYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGM 612

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           K     P+ +TY  L+  F  AG  ++    ++ ML
Sbjct: 613 KSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELML 648



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 102/260 (39%), Gaps = 3/260 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F+   ++   C++G   +A      +     KP L  Y + IHG    G+ + AL+  
Sbjct: 375 NKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVR 434

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M E  + P +  Y+ L+    K   +  + + L  M      PD   +  L+  F   
Sbjct: 435 EKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRN 494

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L      +K ++ K +        A++  +  FG +        ++ N      E   
Sbjct: 495 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTY 554

Query: 318 RKLAEVYIKNY-MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREME 375
             + + Y+K + M S L   G  +  +  +  ++    L++  C  +     + V R M+
Sbjct: 555 STVIDGYVKQHDMSSALKMFGQMMKHKF-KPNVITYTSLINGFCKKADMIRAEKVFRGMK 613

Query: 376 SAKVRWNVTTANIILLAYLK 395
           S  +  NV T   ++  + K
Sbjct: 614 SFDLVPNVVTYTTLVGGFFK 633


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 124 QVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSI 180
           +   MW+ + K  +   N+    +I  LC+ G++ EA + F E+E G+  KPSL  YNS+
Sbjct: 363 EAHQMWRWMVKKNVPPDNTITNTLIYWLCKSGMVREARKLFDELEKGY--KPSLLTYNSL 420

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I G  + G+  EA    ++M E    P + TY+ LI+ + K    DE       M   GC
Sbjct: 421 ISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGC 480

Query: 241 SPDHITYNLLIQEFA 255
           +P  + Y +L+   +
Sbjct: 481 APSKVLYQVLVDSLS 495



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I +L  S   R+  ++FD  +   K  +  +NS  +I  LCE G ++EA + + +M   
Sbjct: 386 LIYWLCKSGMVREARKLFDELEKGYKPSLLTYNS--LISGLCENGELQEAGKVWDDMVER 443

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P+   Y ++I G+ KIGK +E      EM     +P    Y  L+ +  +    D +
Sbjct: 444 RYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSEPIHDDIV 503

Query: 229 DMCLKMMKLDG 239
           D  ++   L G
Sbjct: 504 DNIVQTAALSG 514



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 1/170 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C+EG   EA    +EM G    P   +   ++    + GK  EA    
Sbjct: 309 NEVTYSVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMW 368

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M + N+ P +   + LI    K  M  E       ++  G  P  +TYN LI      
Sbjct: 369 RWMVKKNVPPDNTITNTLIYWLCKSGMVREARKLFDELE-KGYKPSLLTYNSLISGLCEN 427

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G L+     +  M+ +R    + T  A++  +   G  D+    +  ++ 
Sbjct: 428 GELQEAGKVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVT 477



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C +  ++ A + F ++      P + +Y  +I GY + GK  +A   ++EM+   
Sbjct: 246 VLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAG 305

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  +I+A  K     E    ++ M   G +PD      ++      G  +   
Sbjct: 306 VQPNEVTYSVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAH 365

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGML-------DKMEKFYKRLL 306
             ++ M+ K +   ++    ++      GM+       D++EK YK  L
Sbjct: 366 QMWRWMVKKNVPPDNTITNTLIYWLCKSGMVREARKLFDELEKGYKPSL 414


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA+  L+ M  + L P +
Sbjct: 254 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 313

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI  Y K    ++  +  K M+  G SPD ITYN+++Q     GL +    T ++
Sbjct: 314 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GLFQ----TRRT 364

Query: 270 MLTKRMHLR 278
              K +++R
Sbjct: 365 AAAKELYVR 373



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 83/192 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G M+EA++    M    LKP+   Y+++I+GY KI +  +AL+   EM+   
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ ++Q   + +           +   G   +  TYN+++       L     
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             ++++    + L + T   ++DA +  G  D+ +  +    ++         R +AE  
Sbjct: 404 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 463

Query: 325 IKNYMFSRLDDL 336
           I   +   LD L
Sbjct: 464 IGQGLLEELDQL 475



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           N F+   ++  LC+E   +EA+     M    G    P +  Y ++I+G+ K G  ++A 
Sbjct: 157 NVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD------------EIDMCLKMMKLDGCSP 242
              +EM +  + P   TY  +I A  K +  D            E +    +M   G  P
Sbjct: 217 STYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKP 276

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D ITY+ LI  +  AG +         M++  +   + T   +++ Y     ++     +
Sbjct: 277 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 336

Query: 303 KRLLNS 308
           K + +S
Sbjct: 337 KEMESS 342



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 42/328 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEM 203
           +IG  C  G ++    A   +     +     +  ++ G     + ++A+ + L  M E+
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLIQEFACAGLL 260
              P   +Y+ L+          E    L MM  D   G  PD ++Y  +I  F   G  
Sbjct: 153 GCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
            +   TY  ML + +     T  +I+ A      +DK            +  KE  V + 
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDK----------PWSHCKEGRVIES 262

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR---EMES 376
            +++              DL  RIG + +++    L+   CL     +D  ++    M S
Sbjct: 263 EKLF--------------DLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVS 306

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYDARRIGF 432
             ++ N  T + ++  Y K+   +   VL  E+ +  V PDI+T  I    L+  RR   
Sbjct: 307 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT-- 364

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVL 460
               A E++ RI      +E++T  ++L
Sbjct: 365 --AAAKELYVRITESGTQIELSTYNIIL 390



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 40/211 (18%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS------------------------ 173
           N      +I   C+   ME+A+  F+EME   + P                         
Sbjct: 312 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 371

Query: 174 -----------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                      L  YN I+HG  K    ++AL     +  M+L  ++ T++ +I A  K 
Sbjct: 372 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 431

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
              DE          +G  P++ TY L+ +     GLL+ ++  + SM      + S  +
Sbjct: 432 GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGML 491

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
             I+       +L +  KF   +L S +P++
Sbjct: 492 NFIVRE-----LLQRALKFCVGILFSYSPIR 517


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 78  NALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI 137
           N +I  L K  +    I    G WT+    A +  L NS        +FD+  N +K   
Sbjct: 475 NTMINGLCKAGNLDKAIEIVSGMWTRGS--ASLGNLGNS-----FIDLFDIRNNGKKCLP 527

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +      IIG LC+ G ++EA +   EM G  L P   I+++ I+ Y K GK + A   L
Sbjct: 528 DSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVL 587

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM++   +    TY+ LIQ  G      EI   +  MK  G  P+  TYN +I   +  
Sbjct: 588 KEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEG 647

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM---NFGMLDKM 298
           G LK        ML K +     T   ++ A+    +FG   ++
Sbjct: 648 GKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQEL 691



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +FD  KN E   +  +N   ++G L   G + EA     EM    +KP+L  YN ++HG 
Sbjct: 319 IFDSMKNSETLSLRSYNIW-MLG-LVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGL 376

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G F++A   L  M+E  ++P + TY  L+  Y +     E +  L+ M   GC P+ 
Sbjct: 377 CKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNM 436

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            T N+L+      G     E   + M  +   L + T   +++     G LDK
Sbjct: 437 YTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDK 489



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 115/297 (38%), Gaps = 39/297 (13%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           + K +   +    +I  LCE G +E A   F +M     KP+      ++ GY + G  +
Sbjct: 146 VAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHS 205

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             +  L+EM+     P    Y+ +I +        E +  ++ M+  G SPD +T+N  I
Sbjct: 206 HGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRI 265

Query: 252 QEFACAGLLKRMEGTYKSM-LTKRMHLRSSTMVA---ILDAYMNFGMLDKMEKFYKRLLN 307
                +G +      ++ M + + M L     V    +L+ + + GM ++    +  + N
Sbjct: 266 AALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKN 325

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           S T            + +++Y                     +W L L+    LL    I
Sbjct: 326 SET------------LSLRSYN--------------------IWMLGLVRSGKLLEAHLI 353

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              + EM    ++ N+ + NI++    K   F   R +L  +    V PD VT   L
Sbjct: 354 ---LNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTL 407



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 162/412 (39%), Gaps = 43/412 (10%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           KNI   + N ++   ++  LC+ G+  +A      M    + P    Y++++HGY + GK
Sbjct: 360 KNI---KPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGK 416

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA   L EM ++   P   T + L+ +  K     E +  L+MM   G   D++T N 
Sbjct: 417 ILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNT 476

Query: 250 LIQEFACAGLLKRMEGTYKSMLT-----------------------KRMHLRSSTMVAIL 286
           +I     AG L +       M T                       K+    S T   I+
Sbjct: 477 MINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATII 536

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDDLGD 338
                 G +D+ +K    ++  +  L  D +  + + +I NY         F  L ++  
Sbjct: 537 GGLCKVGRVDEAKKKLLEMIGKK--LSPDSL--IFDTFIYNYCKQGKLSSAFRVLKEMEK 592

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
              ++  RT       L S   +    G+   + EM+   +  NV T N I+    +   
Sbjct: 593 KGCNKSLRTYNSLIQGLGSENQIFEIYGL---MDEMKERGIFPNVYTYNNIISCLSEGGK 649

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPL 458
            K    LL E+  + + P+I T  IL  A     D   A E+++    L    E     +
Sbjct: 650 LKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFM 709

Query: 459 VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
              +   G  L+  +E++ +    S   K + Y++LI+ + K +GK  D +F
Sbjct: 710 FNELLAGGETLK-AKELFEAALDRSLALKNFLYRDLIEKLCK-DGKLDDASF 759



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           F+ N  +  ++   F + K +EK   N+    +NS  +I  L  E  + E      EM+ 
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNS--LIQGLGSENQIFEIYGLMDEMKE 627

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P++  YN+II   S+ GK  +A   L+EM +  +SP   T+  LI A+ K   +  
Sbjct: 628 RGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGA 687

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + + L  C      Y+ +  E    G   + +  +++ L + + L++     +++
Sbjct: 688 AQELFE-IALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIE 746

Query: 288 AYMNFGMLD 296
                G LD
Sbjct: 747 KLCKDGKLD 755


>gi|334187948|ref|NP_001190400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332006093|gb|AED93476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 24/294 (8%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E G ME+AV+A  +M+   L P+   YN++I GY   GK   +   L+ 
Sbjct: 118 FNA--VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDL 175

Query: 200 MKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           M E   +++ P   T++ L+QA+ K K  +E    +K M+  G  PD +TYN +   +  
Sbjct: 176 MLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 257 AGLLKRMEG--TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G   R E     K ++ ++      T   ++  Y   G +    +F +R+   R  ++ 
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMR--VEA 293

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS---HACLLSHRGID-SV 370
           +LV           +F+ L +   ++  R G  E+   L L+S      L+ ++ +   V
Sbjct: 294 NLV-----------VFNSLINGFVEVMDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQV 342

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +  M+   V+ +V T + ++ A+      +    +  E+    VKPD     IL
Sbjct: 343 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 396



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P++ I+ ++I G+   G  ++A+   N+M +  +SP   T++ L+  Y + K   + + 
Sbjct: 421 RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEE 480

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            L+MM+  G  P++ T+ LL + +  AGL
Sbjct: 481 VLQMMRGCGVKPENSTFLLLAEAWRVAGL 509



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 116/268 (43%), Gaps = 24/268 (8%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP+      ++ GY + G+  + L F+  MKEM +      ++ LI  +           
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGF----------- 305

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT--KRMHLRSS--TMVAIL 286
            +++M  DG   D +T  LL+  F     L   +     +LT  K  ++++   T   ++
Sbjct: 306 -VEVMDRDGI--DEVTLTLLLMSFNEEVELVGNQKMKVQVLTLMKECNVKADVITYSTVM 362

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
           +A+ + G ++K  + +K ++ +           LA+ Y++     + ++L + L     R
Sbjct: 363 NAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVE-SR 421

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
             +V    ++S  C  S+  +D  +R   +M    V  N+ T   ++  YL++K      
Sbjct: 422 PNVVIFTTVISGWC--SNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAE 479

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIG 431
            +L  +    VKP+  T  +L +A R+ 
Sbjct: 480 EVLQMMRGCGVKPENSTFLLLAEAWRVA 507



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           EK++ N      ++G  C EG + + +R  + M+   ++ +L ++NS+I+G+ ++     
Sbjct: 254 EKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEV----- 308

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             +  + + E+ L+    +++  ++  G  KM  ++   L +MK      D ITY+ ++ 
Sbjct: 309 --MDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQV---LTLMKECNVKADVITYSTVMN 363

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            ++ AG +++    +K M+   +   +     +   Y+      K E+  + L+    P
Sbjct: 364 AWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESRP 422



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 55/105 (52%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I +SR N      +I   C  G M++A+R F +M  F + P+++ + +++ GY ++ +  
Sbjct: 417 IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 476

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +A   L  M+   + P++ T+  L +A+    + DE +  +  +K
Sbjct: 477 KAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 521



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ +L E G   EA   F+ +     +PSL  Y +++   +   ++      ++E+++ 
Sbjct: 50  KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109

Query: 204 NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                S  ++ +I A+ +   M D +   LKM +L G +P   TYN LI+ +  AG  +R
Sbjct: 110 GTKLDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 168


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+E  ++ A  AFQE+ G ++ P    +N+++HG+ K    NEA   + EM+E  
Sbjct: 236 LLDTLCKERSVKRARGAFQELRG-SVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHG 294

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             P   TY  LI+AY   K +  +   L  M+  GC P+ ITY +++     AG
Sbjct: 295 FKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAG 348



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 70/171 (40%), Gaps = 8/171 (4%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+  +M EA    +EME    KPS+  Y S+I  Y     F      LNEM+     P  
Sbjct: 275 CKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNV 334

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  ++ A GK     E       ++ DGC+PD   YN LI     AG L+        
Sbjct: 335 ITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDK 394

Query: 270 MLTKRMHLRSSTMVAILDAYMN-------FGMLDKM-EKFYKRLLNSRTPL 312
           M    +    +T   ++ A  +         ML KM E+  K  + + TPL
Sbjct: 395 MRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPL 445



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 118 RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++R + +  DM K +E    K  +  + S  +I   C E   +       EM      P+
Sbjct: 276 KARMMNEARDMMKEMEEHGFKPSVITYTS--LIEAYCMEKDFQTVYAILNEMRSKGCPPN 333

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y  ++H   K G+  EAL   ++++    +P +  Y+ LI   G+    ++ +  + 
Sbjct: 334 VITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVD 393

Query: 234 MMKLDGCSPDHITYNLLIQEFAC 256
            M++ G  P   T+N LI   AC
Sbjct: 394 KMRMTGVRPTVATFNTLISA-AC 415



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G  +EA+  F ++ G    P    YNS+I+   + G+  +A   +++M+   
Sbjct: 340 VMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTG 399

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P   T++ LI A   +   +     L  M+   C PD  TY  L++
Sbjct: 400 VRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLK 447



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 14/190 (7%)

Query: 65  TLLVESY---HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+E+Y    + Q + A++  +  K  CP  ++ +           V+  L  + R+++
Sbjct: 303 TSLIEAYCMEKDFQTVYAILNEMRSK-GCPPNVITYT---------IVMHALGKAGRTQE 352

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
              +FD  +    +    F +  +I +L   G +E+A     +M    ++P++  +N++I
Sbjct: 353 ALDIFDKVRGDGCAPDASFYNS-LIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLI 411

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
                  +   AL  L +M+E +  P   TY  L++   K +    +   +  M     +
Sbjct: 412 SAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDIT 471

Query: 242 PDHITYNLLI 251
           PD  TY LL+
Sbjct: 472 PDFSTYTLLV 481


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----KFNEALLFLNEM 200
           +I  LC+ G +E+A    + M+       +  YN++IHG  + G    +   A     EM
Sbjct: 80  LINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEM 139

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            +   +P S TY  +I A  + KM ++    L +M  +GC+ D +TYN+LI  FA AG++
Sbjct: 140 VDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMM 199

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +    +  M T+       T  +++D +   G +++  K +  +
Sbjct: 200 DKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEM 244



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 14/174 (8%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           + N F    I+   CE+G   +A+   + M+   +  + ++YN I+    K GK  EAL 
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L+ M   + +P   TY+ LI A  K    ++    ++MM+   C  D +TYN LI    
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIH--- 117

Query: 256 CAGLLKRMEGTYK---------SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
             GL ++  G ++          M+ K     S T   ++DA +   M ++ +K
Sbjct: 118 --GLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQK 169


>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
 gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
          Length = 449

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           PSL  YN +    ++ G  ++A  LFL  ++  +L P + T++G++ AY K  +Y +++ 
Sbjct: 167 PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRDMEY 226

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-KRMHLRSSTMVAILDAY 289
            LK M   G  PD +T+N+LI  +  AG   +ME TYKS++        ++T  ++L +Y
Sbjct: 227 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 286

Query: 290 MNFGMLDKMEKFYKRL 305
                L KME+   R+
Sbjct: 287 GQSRELGKMEQVLVRM 302



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 5/161 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+    ++GL  +     +EM    ++P L  +N +I  Y + G F +       +  +N
Sbjct: 211 IMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSL--VN 268

Query: 205 LS---PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           LS   P + T++ ++ +YG+ +   +++  L  M + G  PD  T+N L+  +  AG L 
Sbjct: 269 LSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELD 328

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            M   +  M+   +  + ST+  +L AY   G++D+ E  +
Sbjct: 329 TMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALF 369


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 1/275 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC++ L+ EA+  F  M+   + P++  Y S+I G     ++ EA   LNEM  +N
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+  LI  + K     E    LK M   G  P+ ITYN L+  ++    +    
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M+T+       +   +++ Y     +D+ ++ +  +++            L   +
Sbjct: 357 KLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNV 383
            +        +L  D+ +     +L     LL   C   + G    + R M+   ++ N+
Sbjct: 417 CQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNL 476

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
               I++ +  K  +  H R L SEL    ++PD+
Sbjct: 477 VMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDV 511



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C++G + +A R F+ M+G  LKP+L +Y  +I    K G  N A    +E+    L P 
Sbjct: 451 FCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPD 510

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              Y  +I    K  + DE     + M+ DGC P+  +YN++I+ F
Sbjct: 511 VQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGF 556



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 13/202 (6%)

Query: 126 FDMWKNIEKSRINEFNSQKI----------IGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           F  WK    + +NE  S  I          I + C+EG + EA    + M    ++P++ 
Sbjct: 279 FSRWKE-ASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVI 337

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS++HGYS   +  EA    + M      P   +Y  LI  Y   K  DE       M
Sbjct: 338 TYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM 397

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +P+ ++Y  LI  F   G L+     +K M T        T   +L+ +   G L
Sbjct: 398 IHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYL 457

Query: 296 DKMEKFYKRLLNSRTPLKEDLV 317
            K  + ++ +    T LK +LV
Sbjct: 458 GKAFRLFRAM--QGTYLKPNLV 477



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 112/286 (39%), Gaps = 5/286 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G   +A+  F +M     +P +  Y +II+G  K+G+   A   + +M E+ 
Sbjct: 167 LINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG 226

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI +  K ++ +E       MK  G SP  ++Y  LIQ        K   
Sbjct: 227 CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEAS 286

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M +  +     T   ++D +   G + + +   K +              L   Y
Sbjct: 287 AMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGY 346

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRW 381
                      L D + +R  + ++     L++  C++  + ID    +  EM    +  
Sbjct: 347 SLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMV--KRIDEAKQLFNEMIHQGLTP 404

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N  +   ++ A+ ++   +  R L  ++ T    PD+ T  +L + 
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEG 450



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 38/262 (14%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L+P++  + ++I+G  K G+F +AL   ++M      P   TY  +I    K      
Sbjct: 155 LGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAA 214

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               +K M   GC PD +TY+ LI       L+      +  M  K +     +  +++ 
Sbjct: 215 AAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQ 274

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLK--EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
              +F    +       +LN  T L    D+V            FS L D          
Sbjct: 275 GLCSFSRWKEASA----MLNEMTSLNIMPDIVT-----------FSLLID---------- 309

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
               ++C        +L  +G   V++ M    V  NV T N ++  Y    +    R L
Sbjct: 310 ----IFC----KEGNVLEAQG---VLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358

Query: 406 LSELPTRHVKPDIVTIGILYDA 427
              + TR  KPD+ +  IL + 
Sbjct: 359 FDVMITRGCKPDVFSYSILING 380



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 70/175 (40%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I   C    ++EA + F EM    L P+   Y ++IH + ++GK  EA     +
Sbjct: 372 FSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKD 431

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY  L++ + K     +     + M+     P+ + Y +LI     +G 
Sbjct: 432 MHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGN 491

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           L      +  +    +         I++     G+LD+  + ++++     P  E
Sbjct: 492 LNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNE 546



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 45/79 (56%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+ G +  A + F E+    L+P ++IY +II+G  K G  +EAL    +M+E  
Sbjct: 482 LIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541

Query: 205 LSPQSDTYDGLIQAYGKYK 223
             P   +Y+ +I+ + ++K
Sbjct: 542 CPPNEFSYNVIIRGFLQHK 560



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           II  LC+EGL++EA+ AF++ME     P+   YN II G+ +    + A+  + EM++
Sbjct: 517 IINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRD 574



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 24/255 (9%)

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSPD 243
           S     ++AL   N M      P    ++ L+ A  + + Y D +    K M+L G SP+
Sbjct: 66  SSFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPN 125

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             T N+LI    C  L++ ++  + S+L K + L     +      +N   L K  +F +
Sbjct: 126 TCTLNILIN---CFCLMQHVDLGF-SVLAKVIKLGLQPTIITFTTLIN--GLCKAGEFAQ 179

Query: 304 RLLNSRTPLKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASR--IGRTELVWCLR-LLSH 358
            L      L +D+V +    +VY    + + L  +G+  A+   I +   V C   ++++
Sbjct: 180 AL-----ELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTY 234

Query: 359 ACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
           + L+     D +V E       M++  +   V +   ++        +K    +L+E+ +
Sbjct: 235 STLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTS 294

Query: 412 RHVKPDIVTIGILYD 426
            ++ PDIVT  +L D
Sbjct: 295 LNIMPDIVTFSLLID 309


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 140/328 (42%), Gaps = 13/328 (3%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++   +  S I  N ++   +I  LC+ G  +EA    +EM    LKP+  +Y  +I 
Sbjct: 437 AFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLII 496

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G+SK G  + A   L +M + N+ P    Y+ LI+        +E +     ++  G  P
Sbjct: 497 GHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVP 556

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D  TY+ LI  +   G L++ +   + ML   +   + T   +L+ Y      +K+    
Sbjct: 557 DEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSIL 616

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSH 358
           + +L S    K D    +  + I+N   S   ++   + + + +  LV  L     L+S 
Sbjct: 617 QSMLGSGD--KPD--NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 672

Query: 359 ACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
            C ++   + +  ++ EM    +   +   N ++  + +  D    R +   +  + + P
Sbjct: 673 LCKIADMEKAV-GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVP 731

Query: 417 DIVTIGILYDARRIGFDGTGALEMWKRI 444
           + VT   L D      D T A +++K +
Sbjct: 732 NCVTYTALIDGNCKNGDITDAFDLYKEM 759



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 53/115 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    ++  LC+   ++EA     EM    LKP++ +Y +++ G+ K GK  EA   L
Sbjct: 312 DAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDIL 371

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            EM    + P    YD LI+   K          LK M   G  PD  TYN L+Q
Sbjct: 372 KEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQ 426



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 126 FDMWKNI-EKSR-----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           FD  K + E+ R     +NE     +I  LC  G +EEA    +EM  + L P    Y +
Sbjct: 259 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 318

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +++G  K  +  EA   L+EM    L P    Y  L+  + K     E    LK M   G
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             P+ I Y+ LI+     G L R     K M+  ++ LR  T  
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI--KVGLRPDTFT 420



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 17/283 (6%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG   EA    +EM    ++P+  +Y+++I G  KIG+   A   L EM ++ L P + 
Sbjct: 360 KEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTF 419

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ L+Q + +    D     L  M+  G  P+  +Y ++I      G  K      + M
Sbjct: 420 TYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEM 479

Query: 271 LTKRMHLRSSTMVAILDAYMNFGML----DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +++ +   +     ++  +   G +    + +EK  K  ++        L++ L+ V   
Sbjct: 480 ISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTV--- 536

Query: 327 NYMFSRLDDLGDDLASRIGRTELV---WCLRLLSHA-CLLSH-RGIDSVVREMESAKVRW 381
                R+++  ++  +++ +  LV   +    L H  C   +    D ++R+M ++ ++ 
Sbjct: 537 ----GRMEE-AEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKP 591

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           N  T   +L  Y K  D++ +  +L  +     KPD    GI+
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIV 634



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E+     Q M G   KP   IY  +I   S+      A + L E+++  L P    Y  L
Sbjct: 610 EKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSL 669

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I    K    ++    L  M  +G  P  + YN LI  F  +G + R    + S+L K +
Sbjct: 670 ISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL 729

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
                T  A++D     G +      YK +L+
Sbjct: 730 VPNCVTYTALIDGNCKNGDITDAFDLYKEMLD 761



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 133/347 (38%), Gaps = 48/347 (13%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + FD+ K +  + +  N+     +I  LC+ G +  A +  +EM    L+P    YN ++
Sbjct: 366 EAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLM 425

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-- 239
            G+ +    + A   LNEM+   + P   +Y  +I    +     E    L+ M  +G  
Sbjct: 426 QGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK 485

Query: 240 ----------------------CS-----------PDHITYNLLIQEFACAGLLKRMEGT 266
                                 C            PD   YN LI+  +  G ++  E  
Sbjct: 486 PNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEY 545

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           Y  +  + +     T   ++  Y   G L+K ++  +++LNS      D    L E Y K
Sbjct: 546 YAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK 605

Query: 327 NYMFSRLDDLGDDLASRIGRTE------LVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
           +  + ++  +   L S +G  +          +R LS +  +    +  V+ E+E   + 
Sbjct: 606 SNDYEKVSSI---LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFM--VLTEVEKNGLV 660

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++   + ++    K+ D +    LL E+    ++P IV    L D 
Sbjct: 661 PDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDG 707



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 58/157 (36%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+    + A + F+EM       +   YN +I G  + G   EA  F  EM +  LSP +
Sbjct: 254 CKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDA 313

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+    K     E    L  M   G  P+ + Y  L+  F   G         K 
Sbjct: 314 FTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKE 373

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           M++  +         ++      G L +  K  K ++
Sbjct: 374 MISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI 410



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 101/231 (43%), Gaps = 5/231 (2%)

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   + P   TY   I+A+ K + +D      + M+   C+ + +TYN++I     +G 
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
           ++   G  + M+   +   + T  A+++       L + +     +  S + LK ++V  
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEM--SCSGLKPNIVVY 351

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-VVREMES 376
             L + ++K    +   D+  ++ S   +   +    L+   C +   G  S +++EM  
Sbjct: 352 GTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +R +  T N ++  + +  D      LL+E+    + P++ + GI+ + 
Sbjct: 412 VGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMING 462



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 112 FLKNSSRSRQIPQVFDMWKN-IEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEM--EG 167
            +  + ++  I   FD++K  +++    +     ++   C +   +E+A+   +EM   G
Sbjct: 739 LIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 798

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +A   ++ ++N+++HG+ K GK  E    L+ M +  + P + T + ++  +GK
Sbjct: 799 YA---NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGK 849


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 18/322 (5%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           +A  AF+ +     +PSL  Y +++   +    F+     L E+++  L P S  ++ LI
Sbjct: 97  QAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALI 156

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A  + +   E       M   GC P   T+N LI+ +  AG  +  +  +  M +    
Sbjct: 157 NALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAG 216

Query: 277 LRS------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             +      +T   ++ A+ + G L++  +   R+  S           LA  Y KN   
Sbjct: 217 GEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDET 276

Query: 331 SRLDDLGDDLASRIG--RTELVWCLRLLSHACLLSHRGID-SVVREMESAKVRWNVTTAN 387
            R ++L  ++A + G   +E  W + ++   C     G     VR+M+ + V  NV   N
Sbjct: 277 WRAEELVVEMAQQAGLRTSERTWGI-IVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
            +L  +L   D   +  +L  +    +KPDIVT    Y  +       G   M K +   
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVT----YSHQLNALSSMG--HMAKCMKVF 389

Query: 448 FKTVE--INTDPLVLAVYGKGH 467
            K +E  I  DP V ++  KG+
Sbjct: 390 DKMIEAGIEPDPQVYSILAKGY 411



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 154/381 (40%), Gaps = 24/381 (6%)

Query: 77  LNALIQ--RLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK 134
           +NAL++  R+ +  +  L++       T   F  +I+    + R  +  +VFDM  +   
Sbjct: 156 INALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGA 215

Query: 135 S-----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
                 R N      ++   C+ G +EEA R    M      P +  YN++   Y+K  +
Sbjct: 216 GGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDE 275

Query: 190 FNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
              A   + EM ++  L     T+  ++  Y +     E   C++ MK  G  P+ I +N
Sbjct: 276 TWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFN 335

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            L++ F  A  +  ++     M    +     T    L+A  + G + K  K + +++ +
Sbjct: 336 TLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRG- 366
                  +   LA+ Y++     + ++L   +  R+G R  +V    ++S  C ++  G 
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEELLRQMG-RLGVRPNVVTFTTVISGWCSVADMGN 454

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
              V   M  A VR N+ T   ++  Y ++K       +L  +    V+P   T  ++ D
Sbjct: 455 AVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVAD 514

Query: 427 ARRIGFDGTGALEMWKRIGFL 447
           A             WK +G +
Sbjct: 515 A-------------WKAVGLV 522



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 51/106 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E+A    ++M    ++P++  + ++I G+  +     A+     M++  + P   T++ L
Sbjct: 418 EKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETL 477

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           I  Y + K   + +  L+MM+  G  P   TY L+   +   GL++
Sbjct: 478 IWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGLVE 523


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+EG  +EA +   EM G  + P   +Y++ IHGY K GK + A+  L +M++  
Sbjct: 525 LVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKG 584

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + TY+ LI  + +    DEI   +  MK  G  P+ +TYN LI+ F   G++ +  
Sbjct: 585 CKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAM 644

Query: 265 GTYKSML 271
                ML
Sbjct: 645 PLLDEML 651



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  +N  + +  L   G++ EA    +EM    ++P+   YN I+ G  K GK  +   
Sbjct: 320 RVESYN--RWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRK 377

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             + +K   ++P   TY  L+ AY         +  L  M   GC+P+  TYN+L+Q   
Sbjct: 378 VEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLW 437

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            AG +   E   + M  K   L +++   I+D       LD
Sbjct: 438 KAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLD 478



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y++++    K G+F+EA   L EM   ++SP S  YD  I  Y K+         
Sbjct: 517 PDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKV 576

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M+  GC P   TYNLLI  F        +      M  K +     T  +++ ++  
Sbjct: 577 LRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCE 636

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            GM++K       +L +           L + + K   FS    + D   S  G+ E+++
Sbjct: 637 RGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVFDASLSTCGQKEVLY 696

Query: 352 CL 353
            L
Sbjct: 697 SL 698



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R+L    R+  + +  ++ + +  E  + N +    I+  LC+EG   +  +    ++  
Sbjct: 326 RWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSG 385

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P +  Y S++H Y   G    A   L+EM +   +P S TY+ L+Q+  K     E 
Sbjct: 386 VMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEA 445

Query: 229 DMCLKMMKLDGCSPDHITYNLLI 251
           +  L+ M   G S D  + N++I
Sbjct: 446 ERLLERMSEKGYSLDTASCNIII 468



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK--- 201
           ++   C EG ++EA R  + M    L P++  +N+ I    K G+  +A    N+M+   
Sbjct: 218 VVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKW 277

Query: 202 EMNLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           E  L  P   T+D ++  + +  M DE  + + +M+  G      +YN  +      G++
Sbjct: 278 ERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMV 337

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM---LDKMEKFYK 303
              +   + M  + +   S T   I+D     G    + K+E F K
Sbjct: 338 GEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVK 383



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 3/203 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAF 162
           F A I  L  + R     ++F DM +  E+   R ++     ++   CE G+++EA    
Sbjct: 250 FNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLV 309

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
             M        +E YN  + G  + G   EA   L EM    + P S TY+ ++    K 
Sbjct: 310 DIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKE 369

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               ++      +K    +PD +TY  L+  +   G           M  K     S T 
Sbjct: 370 GKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTY 429

Query: 283 VAILDAYMNFGMLDKMEKFYKRL 305
             +L +    G + + E+  +R+
Sbjct: 430 NVLLQSLWKAGRITEAERLLERM 452



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +E ++   EM+G  + P++  YNS+I  + + G  N+A+  L+EM +  + P   +++ L
Sbjct: 606 DEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELL 665

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           I+A+ K   +           L  C    + Y+L+  + +  G
Sbjct: 666 IKAFCKTSDFSAAQRVFD-ASLSTCGQKEVLYSLMCTQLSTYG 707



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC  G ME A R F  M     + +   +  +  GY + G+  +AL  L+ 
Sbjct: 151 FTRNILLQALCAAGRMELARRVFDAMP----ERNEFSFGILARGYCRAGRSMDALGVLDS 206

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M  MNL       + ++  + +    DE +  ++ M+ +G +P+ +T+N  I     AG
Sbjct: 207 MPTMNLV----VCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAG 261


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA+   QEM+G   +P +  Y +II  Y +  +F +    L+EM+     P S
Sbjct: 233 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNS 292

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK- 268
            TY  ++ +    K ++E       MK  GC PD + YN LI   A +G L+  E  ++ 
Sbjct: 293 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRV 352

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            M    + + +ST  +++  Y +    DK  +  K + +S
Sbjct: 353 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 392



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V++M   +E   S  N      I+  L  +   EEA+R    M+    +P    YN +I
Sbjct: 275 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLI 334

Query: 182 HGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDG 239
           H  ++ G+  EA  +F  EM E+ +S  + TY+ +I  Y  +   D+ I++  +M   + 
Sbjct: 335 HTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 394

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           C+PD  TY  L++     G +  +    K M+TK
Sbjct: 395 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTK 428



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I  L   G +EEA R F+ EM    +  +   YNS+I  Y    + ++A+  L EM+  
Sbjct: 333 LIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 392

Query: 204 NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNLLIQEFACAGLLK 261
           NL +P   TY  L+++  K     E+   LK M+     S D  TY  LIQ    A + +
Sbjct: 393 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANICE 452

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                ++ M+++ +  R  T + +L+      M +  E+ 
Sbjct: 453 WAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERI 492



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C++    +      EME     P+   Y +I+   +   +F EAL     MK   
Sbjct: 263 IIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSG 322

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM-MKLDGCSPDHITYNLLI-------QEFAC 256
             P S  Y+ LI    +    +E +   ++ M   G S +  TYN +I       +E   
Sbjct: 323 CQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKA 382

Query: 257 AGLLKRMEGT 266
             LLK ME +
Sbjct: 383 IELLKEMESS 392


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+  EA R F+++E     P    YNS+++ +++ G  ++      +M +M       TY
Sbjct: 318 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 377

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  YGK   +D        MKL G SPD +TY +LI     A ++K        ML 
Sbjct: 378 NTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN 437

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            R+     T  A++  Y   G   + E+ +  +L  R+ +K D
Sbjct: 438 ARVKPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPD 478



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+    E+    ++P +  YN++I   S+     EA+   N+M      P   TY+ +I 
Sbjct: 253 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 312

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            YG+  M  E     K ++  G  PD +TYN L+  FA  G + +++   + M+      
Sbjct: 313 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 372

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
              T   I+  Y   G  D   + Y  + L+ R+P
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 407



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+IIH Y K G+ + A    ++MK    SP + TY  LI + GK  M  E    +  M 
Sbjct: 377 YNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEML 436

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML---TKRMHLRSSTMVAILDAYMNFG 293
                P   T++ LI  +A AG     E T+  ML    K  HL  S M   LD  + F 
Sbjct: 437 NARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM---LDILLRFN 493

Query: 294 MLDKMEKFYKRLL 306
              K  K Y+ ++
Sbjct: 494 ESGKAMKLYQEMV 506



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 4/194 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++  L  +++     ++F   +    + +  +N+  ++G+    G   +       M   
Sbjct: 169 ILSVLGKANQEALAVEIFARAEAASGNTVQVYNA--MMGVYARTGRFTKVQELLDLMRSR 226

Query: 169 ALKPSLEIYNSIIHGYSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
             +P L  +N++I+   K G    N A+  LNE++   + P   TY+ LI A  +    +
Sbjct: 227 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 286

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E       M    C PD  TYN +I  +   G+ +     +K + +K     + T  ++L
Sbjct: 287 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 346

Query: 287 DAYMNFGMLDKMEK 300
            A+   G +DK+++
Sbjct: 347 YAFAREGNVDKVKE 360



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +  +++EA     EM    +KP+L  ++++I GY+K GK  EA    + M    
Sbjct: 415 LIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P    Y  ++    ++    +     + M L    PDH  Y ++++
Sbjct: 475 IKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLR 522


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 38/254 (14%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  +C+ G ME A++   +ME   +KP++  Y+++I GYSK+ K+ EAL    +MK M +
Sbjct: 94  IDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRI 153

Query: 206 SPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 Y+ L+  Y K   Y EI ++C +M +L G   D +TYN LI  +   G L  + 
Sbjct: 154 QLDRVCYNTLLAIYVKAGKYAEIANVCDEMEEL-GIEKDTVTYNSLINGYGKQGRLDIVS 212

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M  + +     T   ++D Y   GM    + F   L    + LK D+V       
Sbjct: 213 ILVQDMRKRGVAPSVLTYSTLIDIYSKAGM--HGDAFNVYLDFKESGLKPDVV------- 263

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
               +FS   D        + +  L+ W L LL+               +M    ++ NV
Sbjct: 264 ----LFSSFID-------TLAKNGLIEWALSLLN---------------DMTEMGIKPNV 297

Query: 384 TTANIILLAYLKMK 397
            T N I+ A+ K K
Sbjct: 298 VTYNAIIDAFGKSK 311



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 63/145 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G   E      EME   ++     YNS+I+GY K G+ +   + + +M++  
Sbjct: 163 LLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRG 222

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI  Y K  M+ +        K  G  PD + ++  I   A  GL++   
Sbjct: 223 VAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWAL 282

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
                M    +     T  AI+DA+
Sbjct: 283 SLLNDMTEMGIKPNVVTYNAIIDAF 307



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G+  +A   + + +   LKP + +++S I   +K G    AL  LN+M EM 
Sbjct: 233 LIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMG 292

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
           + P   TY+ +I A+GK K+  E D  +  M + G     I 
Sbjct: 293 IKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIV 334



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  ++      G +E+A   F EM    +   +  YN+ I    K G    A+  L +
Sbjct: 55  FNS--LLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLD 112

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           M+   + P   TY  LI  Y K + Y+E + +C KM  +     D + YN L+  +  AG
Sbjct: 113 MEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMR-IQLDRVCYNTLLAIYVKAG 171

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
               +      M    +   + T  ++++ Y   G LD
Sbjct: 172 KYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLD 209



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 35/266 (13%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            + M+G  L+P+   YN++I    K G      L +  +M +  L P   T++ L+ A  
Sbjct: 4   LESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACS 63

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           +    ++       M   G   D  TYN  I      G ++        M  K +     
Sbjct: 64  RVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVV 123

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   ++D Y      ++  K  +++ + R  L       L  +Y+K   ++ + ++ D  
Sbjct: 124 TYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCD-- 181

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
                                           EME   +  +  T N ++  Y K     
Sbjct: 182 --------------------------------EMEELGIEKDTVTYNSLINGYGKQGRLD 209

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYD 426
            + +L+ ++  R V P ++T   L D
Sbjct: 210 IVSILVQDMRKRGVAPSVLTYSTLID 235


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 44/226 (19%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME--------- 166
           +SR + + F + K +E++RI  + F    +I  LC+EG ++ A + F EM+         
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 167 --------------------------GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
                                        +KP L +YN++++G  K+G  N+A   ++EM
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           K + + P   TY  LI  Y K    +      K M  +G   D++ +  LI  F   G +
Sbjct: 390 KMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAY-------MNFGMLDKME 299
           +  E T + M+   M    +T   ++D Y       M F +L +M+
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQ 495



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG + +A   F E+    L+P+   +N++I+G  K    +E       M+E  
Sbjct: 229 LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR 288

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI    K    D  +     M+  G  P+ IT+  LI     +  +    
Sbjct: 289 IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAM 348

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
            TY  MLT  +         +L+     G ++K  K    +      +K D +    L +
Sbjct: 349 NTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM--KMVGMKPDKITYTTLID 406

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-------RGIDSVVREME 375
            Y K        DL   +  R G  E    L  ++   L+S        R  +  +REM 
Sbjct: 407 GYCKE------GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            A ++ +  T  +++  Y K  + K    LL E+     KP ++T  +L + 
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C +G + +A R  +EM    +KP    Y  +I GY K G        L EM+   
Sbjct: 439 LISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING 498

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             P   TY+ L+    K       +M L+ M   G +PD ITYN+L++
Sbjct: 499 HKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLE 546



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 145 IIGMLCEEGLMEEA--VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I   C+EG +E A  +R     EG  L      + ++I G+ + G+  +A   L EM E
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNV--AFTALISGFCRDGRVRDAERTLREMVE 461

Query: 203 MNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             + P   TY  +I  Y   G  KM  ++   LK M+++G  P  ITYN+L+      G 
Sbjct: 462 AGMKPDDATYTMVIDGYCKKGNVKMGFKL---LKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 260 LKRMEGTYKSML 271
           +K      ++ML
Sbjct: 519 MKNANMLLEAML 530



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G ++   +  +EM+    KP +  YN +++G  K G+   A + L  M  + 
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLG 533

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           ++P   TY+ L++ + K    +++   LK+    G   D+  Y  L+ E+
Sbjct: 534 VTPDDITYNILLEGHCKNGKAEDL---LKLRNEKGLIVDYAYYTSLVSEY 580


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 6/180 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      ++  L + G ME+AV   ++M      P    YN++I G+ K  +  EA+ 
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 334

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L EM E    P   TY  L     +   +DE    L  M   GC+P+ ITY+ ++    
Sbjct: 335 LLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLC 394

Query: 256 CAGLLKRMEGTYKSMLTKRM---HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS-RTP 311
            AG +    G ++ M    +   H+ + +  A++D     G +D+  +F +R++ + R P
Sbjct: 395 KAGRVTEALGYFEKMARDEVVAPHVIAYS--ALIDGLCKAGKIDEAYEFLERMIRAGRIP 452



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           R + ++F +   +    I  FNS  ++  LC+E  + +A   F+       +P++  Y++
Sbjct: 192 RVVDEMFMIESGLSPDVIT-FNS--VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYST 248

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I G SK+ K +EAL  L +M E+     + TY  ++    K    ++  + L+ M+  G
Sbjct: 249 LIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG 308

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           C PD +TYN LI  F     L+   G  + ML    H    T   +       G  D+
Sbjct: 309 CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDE 366



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 133/320 (41%), Gaps = 26/320 (8%)

Query: 117 SRSRQIPQVFDMWKNIEK----SRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALK 171
            + R++ + +D+++          +  +N+  +I  LC+ G +E A+  + +M   F  +
Sbjct: 41  GKQRRVKEAYDLFEEARAKGCHPTVVTYNT--MIDGLCKCGRIENALTLYDDMAIHFGFR 98

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P++  Y+++I G  +  + ++    L EM     +P + TY+ L+ A        E    
Sbjct: 99  PTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSL 158

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M  +GC P+ IT+ L+I+     GL K  E      +   M +  S +    D    
Sbjct: 159 LEQMAANGCPPELITFGLIIK-----GLCKEGEIEAAFRVVDEMFMIESGLSP--DVITF 211

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEVYIKNYMFSRLDDLG--DDLASRIGRTE 348
             +LD + K  +R+L++    K  L R     V   + +   L  +   D+    + +  
Sbjct: 212 NSVLDGLCK-EQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV 270

Query: 349 LVWC------LRLLSHACLLSHRGIDSVV--REMESAKVRWNVTTANIILLAYLKMKDFK 400
            + C         +    L   R  D+VV  R+M  A    +  T N ++  + K +  +
Sbjct: 271 ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 330

Query: 401 HLRVLLSELPTRHVKPDIVT 420
               LL E+      P +VT
Sbjct: 331 EAVGLLREMLEAGFHPSVVT 350



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSP 207
           LC  G  +EAV     M      P+   Y+SI+ G  K G+  EAL +  +M ++  ++P
Sbjct: 358 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 417

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               Y  LI    K    DE    L+ M   G  PD +T+++LI     AG
Sbjct: 418 HVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG 468



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +SR++ +   ++K +    I  +      +I  L ++  ++EA   F+E       P++ 
Sbjct: 7   KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 66

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            YN++I G  K G+   AL   ++M       P   TY  LI    +    D+    L+ 
Sbjct: 67  TYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEE 126

Query: 235 MKLDGCSPDHITYNLLI 251
           M   GC+P+ +TYN L+
Sbjct: 127 MAGRGCAPNAVTYNTLV 143



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 45/107 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++EA    + M      P +  ++ +I+G    G+ +  L     M E  
Sbjct: 425 LIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERG 484

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             P   TY  L+    +    DE     + M+ DG SPD  T   +I
Sbjct: 485 CVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 38/91 (41%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I G  K  K ++A+    +M +  + P   TY  LI   GK +   E     +  +  G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           C P  +TYN +I      G ++     Y  M
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDM 91


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 16/206 (7%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++ + C++G+  EA+     ME   +   +  YNS+I+G+ K G+  EA+   +E
Sbjct: 232 FTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSE 291

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +K  N +P   TY  LI  Y K    +E + MC K+M+  G  P  +TYN ++++    G
Sbjct: 292 IK--NATPNHVTYTTLIDGYCKTNELEEALKMC-KLMEAKGLYPGVVTYNSILRKLCQDG 348

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            ++        M  +++   + T   +++AY   G L    KF  ++L +   LK D   
Sbjct: 349 RIRDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEA--GLKPDPFT 406

Query: 319 KLAEVY----------IKNYMFSRLD 334
             A ++           K  MFS LD
Sbjct: 407 YKALIHGFCKTNELESAKELMFSMLD 432



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 133/349 (38%), Gaps = 60/349 (17%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ-----KIIGMLCEEGLMEEAVRA 161
           W VI + K S  ++   QVF      E+ R++E          ++  L ++G+     + 
Sbjct: 131 WLVIHYAK-SKMTQDAIQVF------EQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKI 183

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           ++ M    + P++ IYN + H  SK G    A   LNEM    +     TY+ L+  Y K
Sbjct: 184 YKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCK 243

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             M+ E       M+ +G + D ++YN LI  F   G ++     +  +  K       T
Sbjct: 244 KGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEI--KNATPNHVT 301

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              ++D Y     L++  K  K +    L         ++RKL +               
Sbjct: 302 YTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQ--------------- 346

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
                  GR                  R  + ++ EM   K++ +  T N ++ AY K+ 
Sbjct: 347 ------DGRI-----------------RDANKLLNEMSERKLQADNITCNTLINAYCKIG 383

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF 446
           D K      +++    +KPD  T    Y A   GF  T  LE  K + F
Sbjct: 384 DLKSALKFKNKMLEAGLKPDPFT----YKALIHGFCKTNELESAKELMF 428



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +   M+  I+ +  N      +I   C+   +EEA++  + ME   L P +  YNSI+  
Sbjct: 284 EAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRK 343

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGC 240
             + G+  +A   LNEM E  L   + T + LI AY K     ++   LK    M   G 
Sbjct: 344 LCQDGRIRDANKLLNEMSERKLQADNITCNTLINAYCK---IGDLKSALKFKNKMLEAGL 400

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            PD  TY  LI  F     L+  +    SML         T   I+D Y
Sbjct: 401 KPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIVDGY 449



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 12/237 (5%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +++R L    R R   ++ +      K + +      +I   C+ G ++ A++   +M  
Sbjct: 339 SILRKLCQDGRIRDANKLLNEMSE-RKLQADNITCNTLINAYCKIGDLKSALKFKNKMLE 397

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             LKP    Y ++IHG+ K  +   A   +  M +   +P   TY  ++  Y K    D 
Sbjct: 398 AGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDA 457

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           +          G   D   Y  LI+       ++  E  +  M  K +   S    +I  
Sbjct: 458 VLALPDEFLSRGICLDVSVYRALIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAY 517

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           AY N G            +++ + + E++ R+   + +K Y      D  ++  S+I
Sbjct: 518 AYWNVGN-----------VSAASSMLEEMARRRLMITVKLYRCFSTSDANENKVSQI 563


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+ G ++EAV+  QEM    L+P ++ Y+ I+ GY  +GK  EA   + EM + +
Sbjct: 217 IVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRD 276

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + +Y   I+A       +E +   + M   GC PD  TY ++I  F   G +    
Sbjct: 277 CAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAAT 336

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              + M    +         I+D ++    L++  + Y+R+L
Sbjct: 337 HVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRIL 378



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM--KEMNLSPQSDTY 212
           +EEA+  +Q +    + PS   YN++I+   K+ K +EAL  L EM  ++  L P   TY
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I   GK  M +     L  M  +G  PD  TY  LIQ  A AG + R     + ML
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEML 485



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +M +   K  I  ++S  +I  L + G ++EA +    M      P+   Y SI+ G  K
Sbjct: 166 EMIRKGHKPDIIAYSS--LIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCK 223

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G+  EA+  + EM+   L P+ DTY  ++  Y      +E    ++ M    C+PD I+
Sbjct: 224 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTIS 283

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           Y + I+     G  +  E  +++M+ K       T   I+D +   G +
Sbjct: 284 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSM 332



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 98  DGDWTKD--HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKII-GMLCEEGL 154
           D D   D   +   I  L +  R  +  +VF+    +EK    + ++  II    C+EG 
Sbjct: 274 DRDCAPDTISYTMFIEALYSIGRREEAEKVFETM--VEKGCKPDMHTYGIIIDNFCKEGS 331

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           M  A    + M+  A+KP+  IY  I+ G+ K  +  EAL     + +  + P + TY+ 
Sbjct: 332 MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNT 391

Query: 215 LIQAYGKYKMYDEIDMCLKMM--KLDGCSPDHITYNLLIQEFACAGLLKR 262
           +I A  K K  DE    L+ M  + +   P  +TY+++I      G+ +R
Sbjct: 392 VINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 441



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 40/169 (23%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME--GFALKPS 173
           +S ++ +  ++++ I K  I  +      +I  LC+   M+EA+   +EM+     L+PS
Sbjct: 363 KSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPS 422

Query: 174 LEIYNSIIHGYSKIG-----------------------------------KFNEALLFLN 198
           +  Y+ IIHG  K+G                                   K + A+  L 
Sbjct: 423 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 482

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           EM +  + P   TY  L+Q   +  +    D+  +MM+ +G +P+  T+
Sbjct: 483 EMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMR-NGHTPNEFTF 530



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY--- 212
           EEA R F+ +E     P    Y +I+ G  K G ++  L +  +M      P   TY   
Sbjct: 92  EEACRLFEAIEA----PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVL 147

Query: 213 -DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            DGL +A+   K+    D+  +M++  G  PD I Y+ LI   + AG
Sbjct: 148 VDGLCKAH---KVERACDVFEEMIR-KGHKPDIIAYSSLIDGLSKAG 190


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 129/311 (41%), Gaps = 47/311 (15%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +V D +K I+K +  + +   ++    + G    A  AF+ M    ++P++  Y ++IH 
Sbjct: 179 KVVDAFKRIKKPK--QRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHA 236

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y+       A+  + EM+   +SP + TY  +I  YG+    +  +   +    +    +
Sbjct: 237 YAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHN 296

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            + YN +I  +  AG ++R E    +M  + +         ++D Y++   +DK    ++
Sbjct: 297 DVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFR 356

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL- 362
           RL                                        RTE      ++S+ CL+ 
Sbjct: 357 RLK--------------------------------------ARTETGLSPTVVSYGCLIN 378

Query: 363 --SHRG-IDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
             S  G +D  ++   EME   ++ N  T ++I+  Y+++ D  +   +  ++    +KP
Sbjct: 379 LYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKP 438

Query: 417 DIVTIGILYDA 427
           D +T  IL +A
Sbjct: 439 DGITYNILMNA 449



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 15/282 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G M++A++   EME   +K + + Y+ II GY ++G    A     +M    
Sbjct: 376 LINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAG 435

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ L+ A+ K    +     L  M+   C P   TY ++I  F   G L+   
Sbjct: 436 IKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAF 495

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            T + M        ++T   I+      G +D+       ++ +     E     L E Y
Sbjct: 496 ETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGY 555

Query: 325 -------IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
                  +    F+R+ ++G        + +++    LL   C     +   ++  EM +
Sbjct: 556 ACIGDMGLAFKYFNRIKEVGL-------KPDVIAYASLLKACCKAGRMQSTLAITAEMAA 608

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A V  N    NI+L  + +  D      ++ ++    + PDI
Sbjct: 609 AGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDI 650



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 54/126 (42%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G M+  +    EM    +  +  IYN ++ G+++ G   EA   + +M+   L+P  
Sbjct: 591 CKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDI 650

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y   I A  K     +    ++ MK  G  P+   Y  LI  +A A   ++    Y  
Sbjct: 651 HSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDE 710

Query: 270 MLTKRM 275
           M +  M
Sbjct: 711 MKSAGM 716



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 43/102 (42%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            + G M EA    Q+M    L P +  Y S I+   K G   +A   + +MK+  + P  
Sbjct: 626 AQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNL 685

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             Y  LI  +      ++  +C   MK  G  PD   Y+ ++
Sbjct: 686 QAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIM 727



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 124 QVFDMWKN---IEKSR-------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           Q  DMW+    ++K R       I+ + S   I   C+ G M +A    ++M+   ++P+
Sbjct: 627 QRGDMWEASDIMQKMRHEGLTPDIHSYTS--FINACCKAGDMLKATETIEQMKQQGVQPN 684

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           L+ Y ++IHG++      +AL+  +EMK   + P    Y
Sbjct: 685 LQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLY 723


>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 40/318 (12%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           Q  +  DM +     +  E    K+I +L + G  + A + F  M      P+ E+Y ++
Sbjct: 120 QALETLDMLREQSFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTAL 179

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +  Y +    +EAL  L+EMK   L  P   TY  LI+A      ++ I++  + M    
Sbjct: 180 LAAYCRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRS 239

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKM 298
             P+ +T N+++  +  AG+  +ME     ML +        TM  I+  + N G +D M
Sbjct: 240 IMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMM 299

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           EK+Y++  N     +      L   Y K  M+ ++                         
Sbjct: 300 EKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM------------------------- 334

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     SV+  M   +  W  +T N ++ A+ +  D K++    +++ +  ++ D 
Sbjct: 335 ---------SSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADT 385

Query: 419 VTIGILYDARRIGFDGTG 436
            T   L      GF   G
Sbjct: 386 KTFCCLIK----GFANAG 399



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP +   N+II  +  +G+ +    +  + +   + P++ T++ LI +YGK +MYD++  
Sbjct: 277 KPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSS 336

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            ++ M+         TYN +I+ FA AG  K ME T+  M ++ M   + T   ++  + 
Sbjct: 337 VMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFA 396

Query: 291 NFGMLDKM 298
           N G+  K+
Sbjct: 397 NAGLFHKV 404



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 89/189 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG+    G ++   + +++   F ++P    +N +I  Y K   +++    +  M+++ 
Sbjct: 286 IIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLQ 345

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               + TY+ +I+A+ +      ++     M+ +G   D  T+  LI+ FA AGL  ++ 
Sbjct: 346 FPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGLFHKVI 405

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            + +      + L ++   A+L A      L +M++ + R+ +++ PL +     + E Y
Sbjct: 406 SSVQLAAKLEIPLNTAFYNAVLSACAKAEDLMEMDRVFMRMKDTQCPLDDTTYSIMVEAY 465

Query: 325 IKNYMFSRL 333
            K  M  ++
Sbjct: 466 RKEGMNDKI 474


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 150/407 (36%), Gaps = 76/407 (18%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           D +W ++  LKNS+   QIP   F +                +I    + G+ E+AV +F
Sbjct: 113 DTYWKILEELKNSNI--QIPPPTFSV----------------LIAAYAKSGMAEKAVESF 154

Query: 163 QEMEGFALKPSLEIYNSIIH-----------------------------------GYSKI 187
            +M+ F  KP +  YNSI+H                                   G  K 
Sbjct: 155 GKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN 214

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           GK ++AL   +EM +  + P +  Y  ++    + K  D++   L  MK+ GC PD IT 
Sbjct: 215 GKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITC 274

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME----KFYK 303
           N L+  F   G +       +    +   L      +++D        D+++    K +K
Sbjct: 275 NALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
             +     L   L+R   EV + +Y  + L+D+     ++ G +   +C   L       
Sbjct: 335 AGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM-----TQRGLSPDTYCYNALIKG--FC 387

Query: 364 HRGIDSVVR----EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
             G+    R    E+          T  I++    +       R + +++      P I+
Sbjct: 388 DVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIM 447

Query: 420 TIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKG 466
           T   L D    G    G LE  +    LF  +EI  +P +     +G
Sbjct: 448 TFNALID----GLCKAGELEEARH---LFYKMEIGKNPSLFLRLSQG 487



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 23/260 (8%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P + +Y  +I G+ ++G  + AL  LN+M +  LSP +  Y+ LI+ +    + D+ 
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395

Query: 229 -DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
             + L++ K D C P   TY +LI      GLL      +  M          T  A++D
Sbjct: 396 RSLQLEISKND-CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALID 454

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
                G L++    + ++   + P                 +F RL    D +       
Sbjct: 455 GLCKAGELEEARHLFYKMEIGKNP----------------SLFLRLSQGADRVMDTASLQ 498

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
            +V   RL     +L       ++ ++  + V  ++ T N+++  + K K+      L  
Sbjct: 499 TMVE--RLCESGLILKAY---KLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFR 553

Query: 408 ELPTRHVKPDIVTIGILYDA 427
           EL  +   PD VT G L D 
Sbjct: 554 ELQLKGHSPDSVTYGTLIDG 573



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q ++  LCE GL+ +A +   ++    + P +  YN +I+G+ K    N A     E++ 
Sbjct: 498 QTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQL 557

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
              SP S TY  LI  + +    ++    L  M  +GC+P    Y  L+
Sbjct: 558 KGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLM 606



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 49/158 (31%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL---------- 194
           I GM C  GL++EA + F +ME     PS+  +N++I G  K G+  EA           
Sbjct: 418 ICGM-CRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGK 476

Query: 195 ---LFLN-----------------------------------EMKEMNLSPQSDTYDGLI 216
              LFL                                    ++ +  + P   TY+ LI
Sbjct: 477 NPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLI 536

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             + K K  +      + ++L G SPD +TY  LI  F
Sbjct: 537 NGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGF 574



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 52/135 (38%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N +I   +K   F+     L E+K  N+     T+  LI AY K  M ++       MK
Sbjct: 99  HNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMK 158

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GC PD  TYN ++       +       Y  ML    +   +T V +L+     G  D
Sbjct: 159 DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTD 218

Query: 297 KMEKFYKRLLNSRTP 311
              K +  +     P
Sbjct: 219 DALKMFDEMTQKGIP 233


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 3/294 (1%)

Query: 128 MWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           ++K +E++  ++N      +I  LC+   + EA+  F  M+   + P++  Y S+I G  
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLC 161

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
              ++ EA   LNEM  +N+ P   T++ L+  + K       +  LK M   G  PD +
Sbjct: 162 NFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVV 221

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TYN L+  ++    +      +  M+TK       +   +++ Y     +D+ ++ +  +
Sbjct: 222 TYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM 281

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
           ++  +         L     +        DL  ++ +      L     LL   C   + 
Sbjct: 282 IHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYL 341

Query: 366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           G    + R M+S  ++ N+   NI++ A  K  + K  R L SEL    ++P++
Sbjct: 342 GKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNV 395



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 127 DMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D++KN+  +    N +    ++   C++G + +A R F+ M+   LKP+L +YN +++  
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G   +A    +E+  + L P    Y  +I    K  + DE     + M+ DGC PD 
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDE 430

Query: 245 ITYNLLIQEF 254
            +YN++I+ F
Sbjct: 431 FSYNVIIRGF 440



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 13/202 (6%)

Query: 126 FDMWKNIEKSRINEFNSQKI----------IGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           F  WK    + +NE  S  I          +   C+EG +  A    + M    ++P + 
Sbjct: 163 FSRWKE-ASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVV 221

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNS+++GYS   +  EA    + M      P   +Y  LI  Y K K  DE       M
Sbjct: 222 TYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM 281

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +P++++YN LI      G L+  +  +K+M T        T   +LD +   G L
Sbjct: 282 IHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYL 341

Query: 296 DKMEKFYKRLLNSRTPLKEDLV 317
            K  + ++ +    T LK +LV
Sbjct: 342 GKAFRLFRAM--QSTYLKPNLV 361



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 10/327 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I  L    +  Q  ++FD        + +++    II  LC+ G    A   F++M
Sbjct: 48  FTTLINGLGKVGKFAQAVELFDDMV-ARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM 106

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E    + ++  Y+++IH   K  + NEAL   + MK  ++SP   TY  LIQ    +  +
Sbjct: 107 EEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRW 166

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E    L  M      P+ +T+N+L+  F   G +   EG  K+M    +     T  ++
Sbjct: 167 KEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSL 226

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI- 344
           +  Y  +  + +  K +  ++      K D+      + I  Y  ++  D    L + + 
Sbjct: 227 MYGYSMWTEVVEARKLFDVMITKGC--KPDVFSY--SILINGYCKAKRIDEAKQLFNEMI 282

Query: 345 --GRTELVWCLRLLSHA-CLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
             G T        L H  C L   R    + + M +     N+ T  I+L  + K     
Sbjct: 283 HQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLG 342

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDA 427
               L   + + ++KP++V   IL +A
Sbjct: 343 KAFRLFRAMQSTYLKPNLVMYNILVNA 369



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 14/202 (6%)

Query: 126 FDMWKNIEKSR------------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + MW  + ++R             + F+   +I   C+   ++EA + F EM      P+
Sbjct: 230 YSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPN 289

Query: 174 LEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
              YN++IHG  ++G+  EA  LF N     NL P   TY  L+  + K     +     
Sbjct: 290 NVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNL-PNLYTYAILLDGFCKQGYLGKAFRLF 348

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M+     P+ + YN+L+     +G LK     +  +    +         I++     
Sbjct: 349 RAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKE 408

Query: 293 GMLDKMEKFYKRLLNSRTPLKE 314
           G+LD+  + ++ + +   P  E
Sbjct: 409 GLLDEALEAFRNMEDDGCPPDE 430



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 38/267 (14%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L+P++  + ++I+G  K+GKF +A+   ++M      P   TY  +I    K      
Sbjct: 39  LGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETAL 98

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                K M+  GC  + +TY+ LI        +      +  M  K +     T  +++ 
Sbjct: 99  AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
              NF    +       LLN  T L       +  V   N +       G  LA+     
Sbjct: 159 GLCNFSRWKEASA----LLNEMTSLN-----IMPNVVTFNVLVDTFCKEGKVLAA----- 204

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                               + V++ M    V  +V T N ++  Y    +    R L  
Sbjct: 205 --------------------EGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFD 244

Query: 408 ELPTRHVKPDIVTIGILYD----ARRI 430
            + T+  KPD+ +  IL +    A+RI
Sbjct: 245 VMITKGCKPDVFSYSILINGYCKAKRI 271



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 46/79 (58%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  +C+ G +++A   F E+    L+P+++IY +II+G  K G  +EAL     M++  
Sbjct: 366 LVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425

Query: 205 LSPQSDTYDGLIQAYGKYK 223
             P   +Y+ +I+ + ++K
Sbjct: 426 CPPDEFSYNVIIRGFLQHK 444



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+EGL++EA+ AF+ ME     P    YN II G+ +    + A+  + EM++  
Sbjct: 401 IINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 460

Query: 205 LSPQSDT 211
               + T
Sbjct: 461 FITDAGT 467


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 1/275 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC+ G +  A R   EM+   L P+  IY+ +I G  ++G  +EA+     M E  
Sbjct: 234 LVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKG 293

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P + TY  +     + K  +E  +  + M+  G  PD+   + LI  F   G +  + 
Sbjct: 294 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 353

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M++  + +   T   ++     FG ++K  +  K ++             L E Y
Sbjct: 354 RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGY 413

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVREMESAKVRWNV 383
            + +   R  +L D++  R      V    +++  C      + + ++ +M  + ++ NV
Sbjct: 414 CREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNV 473

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
              +I+++AY      +  R LL  +    V PDI
Sbjct: 474 VVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDI 508



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 33/316 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NEF    +I  +C+ G ++EAV   + M    L P+   Y  I  G  +  + NEA L  
Sbjct: 262 NEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTF 321

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM++  L P  +    LI  + +    DE+     +M   G   + ITYN+LI      
Sbjct: 322 EEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKF 381

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM---NFG----MLDKMEK--------FY 302
           G +++     K M+T      S T   +++ Y    N G    +LD+MEK         Y
Sbjct: 382 GKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 441

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
             ++N     K+     LA   ++   FS L               +V+ + ++++A   
Sbjct: 442 GAMINGLCHCKD---LSLANKLLEKMTFSGLKP-----------NVVVYSILIMAYASEG 487

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                  ++  M  + V  ++   N I+    K    +     L E+  R +KPD VT G
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 423 ILYDARRIGFDGTGAL 438
               A  +G+  TG +
Sbjct: 548 ----AFILGYSKTGKM 559



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 124/318 (38%), Gaps = 38/318 (11%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A I  L  + R ++  +VF   K  EK  + + F    +I   C++G +E+A     EM 
Sbjct: 618 AFIHGLLKNGRVQEALKVFSELK--EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMC 675

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
              + P++ IYN+++ G  K G    A    + M E  L P S TY  +I  Y K +   
Sbjct: 676 LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVA 735

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E       M   G  P    YN L+      G +++    ++ ML K     + +   ++
Sbjct: 736 EAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLI 794

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
           D Y     + +  + ++ ++  +  +  D V     +               D   + G+
Sbjct: 795 DGYCKSCKIQEASQLFQEMIAKQ--IMPDHVTYTTVI---------------DWHCKAGK 837

Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
            E          A LL         +EM+   +  +  T   ++  Y K+     +  L 
Sbjct: 838 ME---------EANLL--------FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALF 880

Query: 407 SELPTRHVKPDIVTIGIL 424
            ++  + VKPD VT G++
Sbjct: 881 EKMVAKGVKPDEVTYGLV 898



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           ++K      +   +I   C+   ++EA + FQEM    + P    Y ++I  + K GK  
Sbjct: 780 LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA L   EM+E NL   + TY  L+  Y K     E+    + M   G  PD +TY L+I
Sbjct: 840 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN      +I  LC+ G ME+A    + M     KP+   +  +I GY +      AL  
Sbjct: 366 INLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALEL 425

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM++ NL P + +Y  +I      K     +  L+ M   G  P+ + Y++LI  +A 
Sbjct: 426 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYAS 485

Query: 257 AG 258
            G
Sbjct: 486 EG 487



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  L + G MEEA     E++G  LKP    + + I GYSK GK  EA  + +E
Sbjct: 509 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 568

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +  L P +  Y  LI  + K     E     + +   G  PD  T +  I      GL
Sbjct: 569 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIH-----GL 623

Query: 260 LK 261
           LK
Sbjct: 624 LK 625



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 70/179 (39%), Gaps = 49/179 (27%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIY----------------------------------- 177
           G M EA + F EM    L P+  +Y                                   
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTC 616

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDM 230
           ++ IHG  K G+  EAL   +E+KE  L P   TY  LI  + K       ++++DE  M
Sbjct: 617 SAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE--M 674

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           CLK     G +P+   YN L+     +G ++R    +  M  K +   S T   ++D Y
Sbjct: 675 CLK-----GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 103/276 (37%), Gaps = 34/276 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           EG +EEA R    M    + P +  YN+II   SK GK  EA  +L E++   L P + T
Sbjct: 486 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 545

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           +   I  Y K     E       M   G  P++  Y +LI     AG L      ++ + 
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLH 605

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              +     T  A +   +  G + +  K +       + LKE  +  + +V+  + + S
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVF-------SELKEKGL--VPDVFTYSSLIS 656

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                G          E+     L    CL   +GI              N+   N ++ 
Sbjct: 657 GFCKQG----------EVEKAFELHDEMCL---KGIAP------------NIFIYNALVD 691

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              K  D +  R L   +P + ++PD VT   + D 
Sbjct: 692 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 727



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC+   + EA +   EM    LKPSL   N+++  + + GK +EA      +K + 
Sbjct: 933  LITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLG 992

Query: 205  LSPQSDTYDGLIQA 218
            L P + T   L+  
Sbjct: 993  LVPDTTTLIDLVNG 1006


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    + P   TY+ L+    K     E       M   G  P+  TY  L+Q +A  
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA   L  
Sbjct: 482 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M  + + P   TY+ LI  Y K    ++  +  + M+  G SPD ITYN+++Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 162/394 (41%), Gaps = 50/394 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR-TP--------------------LKEDLVRKLAE-VYIK 326
               G ++   ++++++++ R +P                     KE ++  L   + + 
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLD 478

Query: 327 NYMFSRLDDL----GD--------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR- 372
              F+ + D     G         DL  RIG + +++    L+   CL     +D   + 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKL 536

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYD 426
              M S  ++ +  T N ++  Y K+   +   VL  E+ +  V PDI+T  I    L+ 
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            RR       A E++  I      +E++T  ++L
Sbjct: 597 TRRT----AAAKELYVGITESGTQLELSTYNIIL 626



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 129/289 (44%), Gaps = 13/289 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+R F++M    L P   +YNS+IH      K+++A   + EM +  
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  PD ITY+ LI  +  AG +    
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               SM++  M     T   +++ Y     ++     ++ + +S   +  D++     + 
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS--GVSPDIITY--NII 590

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVREMES---A 377
           ++    +R      +L   +G TE    L L ++  +L     +   D  +R  ++    
Sbjct: 591 LQGLFQTRRTAAAKEL--YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            ++    T NI++ A LK+      + L + L    + PD+ T  ++ +
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG +++A   + EM    + P++  Y+SII    K    ++A+  L  M +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M  DG  PD +TYN L+      G      
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC+E   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY  +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +        ++ Y            A++    E+              H  +D +VR   
Sbjct: 339 ITTY--GTLLQGY------------ATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425


>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like [Vitis vinifera]
          Length = 563

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC  G +++A R  +EM G  ++   + Y  +++ Y KIGK ++A+  L EMK   
Sbjct: 313 ILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRG 372

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-GLLKRM 263
           ++P   +++ + +   +    D+  + L+ MK  GC+P+ ++Y+ +I     A G +  +
Sbjct: 373 INPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEV 432

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           E     M     HL +S    ++  Y   G  D   + +  +L+
Sbjct: 433 EEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLD 476



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA R    M    LK ++  + SI+ G   +GK ++A   L EM  + +   +  Y
Sbjct: 286 GNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAY 345

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             ++  Y K    D+    LK MK  G +P   ++N + +
Sbjct: 346 GVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFR 385


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC +G + + +  F+++    L+P L  YN +IHG  K G+  EAL   N+M++  
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            ++P   TY+ LI   GK     E     + +   G  P+  TYN LI+ ++ +G  +   
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 265  GTYKSMLTKRMHLRSST 281
              Y  M+       SST
Sbjct: 1067 AAYGRMIVGGCRPNSST 1083



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 142/332 (42%), Gaps = 20/332 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I+    +S + +  ++F +M +N     +   NS  +I ML + G   EA + F E
Sbjct: 489 YTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNS--LIDMLYKAGRGNEAWKIFYE 546

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++   L+P+   YN+++ G  + GK  E +  L  M   +  P   TY+ ++    K   
Sbjct: 547 LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCK--- 603

Query: 225 YDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             E++  L M   M ++GC PD  +YN ++      G L      +  M  K +    +T
Sbjct: 604 NGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM-KKVLAPDYAT 662

Query: 282 MVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +  IL +++  G++ + +    + +L   + +    V  L E  +K     +  +  +++
Sbjct: 663 VCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENI 722

Query: 341 ASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
           AS     + ++   ++ H C     L +H     +V++ E+  V     + N ++   + 
Sbjct: 723 ASSGLLLDDLFLSPIIRHFCKHKEALAAHE----LVKKFENLGVSLKTGSYNALICGLVD 778

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                    L SE+      PD  T  ++ DA
Sbjct: 779 EDLIDIAEELFSEMKRLGCDPDEFTYHLILDA 810



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 22/237 (9%)

Query: 92  LQILQHDGDWT--KDHFWAV------------IRFLKNSSRSRQIPQVFDMWKNIEKSRI 137
           +QIL   G     KD FW +            I  L     S     V ++W  ++    
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 138 NE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N+   +    +  LC+ G ++EA+  F EM+   + P    YNS+I G+ K  +FN AL 
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N M     +P   T+   I  +GK     +     ++MK  G  PD +  N ++   A
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 256 CAGLL---KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
             G L   KR+    K+M     ++  + M+       N    D+  K +  ++ +R
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN---ADEAMKIFAEMIENR 516



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G  E+    F+ M    + P ++ Y  +I      G+ N+ L +  ++ +M L P   TY
Sbjct: 920  GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 213  DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
            + LI   GK    +E       M+  G +P+  TYN LI     AG        Y+ +L 
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 273  KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            K       T  A++  Y   G  +     Y R++
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMI 1073



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    I+  + +   +E+ ++  +EM     K +   YN+II G  K    +EA+   
Sbjct: 800 DEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLY 859

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++     SP   TY  L+    K    ++ +     M   GC P+   YN+L+  +  A
Sbjct: 860 YQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA 919

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +++   ++SM+ + M+    +   ++D     G L+    ++K+L +    L+ DL+
Sbjct: 920 GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTD--MGLEPDLI 977



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +    +I  L + G   EA+  ++ M    + P++  Y+ ++  + K       +  
Sbjct: 169 LNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGL 228

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM+   + P   +Y   I+  G+    +E    L+ M+ +GC PD +T  +LIQ    
Sbjct: 229 LGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCD 288

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           AG L   +  +  M          T + +LD
Sbjct: 289 AGRLADAKDVFWKMKASDQKPDRVTYITLLD 319



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++  ++   R   + QVFD M + I K+ +  F +  + G +  EG +  A  A   M+ 
Sbjct: 107 MLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCT--VFGAVGVEGGLRSAPVALPVMKE 164

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +  +   YN +I+   K G   EA+     M    + P   TY  L+ A+GK +  + 
Sbjct: 165 AGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAET 224

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           +   L  M+  G  P+  +Y + I+    AG   R+E  Y+
Sbjct: 225 VVGLLGEMEARGVRPNVYSYTICIRVLGQAG---RLEEAYR 262



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           FLK    +R + ++F+   NI     N +     I    + G   +A++ ++ M+   + 
Sbjct: 391 FLKADRFNRAL-ELFNHM-NIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIV 448

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +   N++++G +K G+   A    +E+K M +SP + TY  +I+   K    DE    
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKI 508

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAG 258
              M  + C+PD +  N LI     AG
Sbjct: 509 FAEMIENRCAPDVLAMNSLIDMLYKAG 535



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 158/401 (39%), Gaps = 38/401 (9%)

Query: 59   HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQI-----LQHDGDWTKDHFWA-VIRF 112
            H+ +   L  +S  +  ++++L++ + K+      I     +   G    D F + +IR 
Sbjct: 681  HTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRH 740

Query: 113  LKNSSRSRQIPQVFDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
                  +    ++   ++N+  S +   +N+  +I  L +E L++ A   F EM+     
Sbjct: 741  FCKHKEALAAHELVKKFENLGVSLKTGSYNA--LICGLVDEDLIDIAEELFSEMKRLGCD 798

Query: 172  PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDM 230
            P    Y+ I+    K  +  + L    EM          TY+ +I    K KM DE I++
Sbjct: 799  PDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINL 858

Query: 231  CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
              ++M  +G SP   TY  L+      G ++  E  +  ML        +    +L+ Y 
Sbjct: 859  YYQLMS-EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 917

Query: 291  NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-----MFSRLDDLGDDLA---- 341
              G  +K+ + +           E +V +     IK+Y            L D L+    
Sbjct: 918  IAGDTEKVCELF-----------ESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQ 966

Query: 342  -SRIGRTELVWCLRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKD 398
             + +G    +    LL H    S R  +  S+  +ME   +  N+ T N ++L   K   
Sbjct: 967  LTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGK 1026

Query: 399  FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
                  +  EL  +  KP++ T    Y+A   G+  +G+ E
Sbjct: 1027 AAEAGKMYEELLAKGWKPNVFT----YNALIRGYSVSGSPE 1063



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 117  SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             +S ++ +   ++ ++EK  I  N +    +I  L + G   EA + ++E+     KP++
Sbjct: 987  GKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNV 1046

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
              YN++I GYS  G    A      M      P S TY
Sbjct: 1047 FTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 125/316 (39%), Gaps = 36/316 (11%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R L   S+ ++   V  +W+ ++   I  N      ++   C    +  A+    +M   
Sbjct: 86  RLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKL 145

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P +  + S+++G+ +  +  +AL   + M EM   P    Y+ +I    K K  D  
Sbjct: 146 GHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNA 205

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L  M++DG  PD +TYN LI     +G           M  + ++    T  A++DA
Sbjct: 206 LDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDA 265

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
            +  G + + E+ Y+ ++  R  L  D+V     +Y    M+SRLD+             
Sbjct: 266 CVKEGRISEAEELYEEMI--RRSLDPDIVTYSLLIY-GLCMYSRLDE------------- 309

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                              + +   M S     +V T +I++  Y K K  +H   L  E
Sbjct: 310 ------------------AEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE 351

Query: 409 LPTRHVKPDIVTIGIL 424
           +  R V  + VT  +L
Sbjct: 352 MSQRGVVRNTVTYTVL 367



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 2/196 (1%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S+Q+    D+   +E    R +      +I  LC  G  ++A R    M    + P + 
Sbjct: 198 KSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVF 257

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +N++I    K G+ +EA     EM   +L P   TY  LI     Y   DE +     M
Sbjct: 258 TFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFM 317

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC PD +TY++LI  +  +  ++     +  M  + +   + T   ++  Y   G L
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKL 377

Query: 296 DKMEKFYKRLLNSRTP 311
           +  E+ +K ++    P
Sbjct: 378 NVAEEIFKWMVFCGVP 393



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+    +M+   +   +  YN II G  K G+  +A      +    L+P 
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
             TY  ++    K  +  E D   + MK DG  P+ 
Sbjct: 466 IWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPNE 501



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 67/161 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   +E  ++ F EM    +  +   Y  +I GY + GK N A      M    
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ L+         ++  + L  M+  G   D +TYN++I+    AG +    
Sbjct: 392 VPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             Y S+  K +     T  A++      G+  + +  ++++
Sbjct: 452 DLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKM 492


>gi|297723401|ref|NP_001174064.1| Os04g0583150 [Oryza sativa Japonica Group]
 gi|38346804|emb|CAE04154.2| OSJNBa0088A01.11 [Oryza sativa Japonica Group]
 gi|125591406|gb|EAZ31756.1| hypothetical protein OsJ_15910 [Oryza sativa Japonica Group]
 gi|215686818|dbj|BAG89668.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255675722|dbj|BAH92792.1| Os04g0583150 [Oryza sativa Japonica Group]
          Length = 606

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 3/247 (1%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ ++  + K++ ++  R+ +     I+    +   ++ A+RA+ ++     +P    Y 
Sbjct: 345 RVEKIMGVAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRAYDKLIALGCEPGQVTYA 404

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+ Y ++G+ + A    +EM +         Y  +I  YGK     +    L +MK  
Sbjct: 405 SVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKK 464

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC P+   YN L+      G  ++ E  +K M+ +++     +  AI++A+   G LD+ 
Sbjct: 465 GCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRC 524

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLS 357
              Y+    +   +   L   +  V+ K   F+ L +L  D+  +R+ R   +  LR L 
Sbjct: 525 MDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDMQGTRLDRRLYLTVLRSLR 584

Query: 358 HACLLSH 364
            A L  H
Sbjct: 585 DAGLEVH 591


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 132/338 (39%), Gaps = 60/338 (17%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + FNS  ++  +C+ G ++ AV     M  F  +P +  YNS+I G+ + G    A L L
Sbjct: 57  SSFNS--VVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVL 114

Query: 198 NEMKE---MNLSPQSDTYDGLIQAYGKYKMYDE----------------------IDMCL 232
             ++        P   +++ L   + K KM DE                      IDM  
Sbjct: 115 ESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDMFC 174

Query: 233 K------------MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K             MK D   P+ +T+  LI  +  AG L+ +   Y+ M   RM L   
Sbjct: 175 KSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSLNVV 234

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKNYMFSRLDDLGD 338
           T  A++D +   G + +    Y R+L       ED V   + VY  I N  F R D    
Sbjct: 235 TYTALIDGFCKKGEMQRAGGMYLRML-------EDRVEPNSLVYTTIINGFFQRGD---S 284

Query: 339 DLASRIGRTELVWCLRL--------LSHACLLSH-RGIDSVVREMESAKVRWNVTTANII 389
           D A +     L   +RL        +S  C +   +    +V +ME   +  ++     +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTM 344

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + AY K    K    +  +L  R  +PD+V +  + D 
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDG 382



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  LC++G + +A +   +M    L+  L  Y ++I+G +  G   EA    +EM    +
Sbjct: 445 IAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGV 504

Query: 206 SPQSDTYDGLIQAYGK 221
            P S  +D LI+AY K
Sbjct: 505 CPDSAVFDLLIRAYEK 520


>gi|125549468|gb|EAY95290.1| hypothetical protein OsI_17116 [Oryza sativa Indica Group]
          Length = 608

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 1/211 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+RA+ ++     +P    Y S+I+ Y ++G+ + A    +EM +         Y  
Sbjct: 383 LKPAIRAYDKLIALGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGN 442

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  YGK     +    L +MK  GC P+   YN L+      G  ++ E  +K M+ ++
Sbjct: 443 MISMYGKISRASDAMRLLAVMKKKGCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRK 502

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     +  AI++A+   G LD+    Y+    +   +   L   +  V+ K   F+ L 
Sbjct: 503 IQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELI 562

Query: 335 DLGDDL-ASRIGRTELVWCLRLLSHACLLSH 364
           +L  D+  +R+ R   +  LR L  A L  H
Sbjct: 563 ELLKDMQGTRLDRRLYLTVLRSLRDAGLEVH 593



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I + C+ G  + A   F EM        +  Y ++I  Y KI + ++A+  L  MK+  
Sbjct: 408 VINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKG 467

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ L+  +G+     + +   K M      PD I+Y  +I  F  +G L R  
Sbjct: 468 CEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCM 527

Query: 265 GTYK 268
             Y+
Sbjct: 528 DLYQ 531


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA+   QEM+G   +P +  Y +II  Y +  +F +    L+EM+     P S
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK- 268
            TY  ++ +    K ++E       MK  GC PD + YN LI   A AG L+  E  ++ 
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            M    + + +ST  +++  Y +    DK  +  K + +S
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 6/210 (2%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V++M   +E   S  N      I+  L  +   EEA+R    M+    KP    YN +I
Sbjct: 277 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 336

Query: 182 HGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDG 239
           H  ++ G+  EA  +F  EM E+ +S  + TY+ +I  Y  +   D+ I++  +M   + 
Sbjct: 337 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 396

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYMNFGMLDKM 298
           C+PD  TY  L++     G +  +    K M+TK  + L  ST   ++       M +  
Sbjct: 397 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWA 456

Query: 299 EKFYKRLLNSR-TPLKEDLVRKLAEVYIKN 327
              ++ +++   TP     +  L EV  KN
Sbjct: 457 YCLFEEMISQDITPRHRTCLLLLEEVKKKN 486



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I  L   G +EEA R F+ EM    +  +   YNS+I  Y    + ++A+  L EM+  
Sbjct: 335 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394

Query: 204 NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNLLIQEFACAGLLK 261
           NL +P   TY  L+++  K     E+   LK M+     S D  TY  LIQ    A + +
Sbjct: 395 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 454

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                ++ M+++ +  R  T + +L+      M +  E+ 
Sbjct: 455 WAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERI 494


>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35130-like [Glycine max]
          Length = 357

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 131/324 (40%), Gaps = 47/324 (14%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + A I  L     S +  ++F  M K+  KS    +    +I +  + G    A+  F E
Sbjct: 9   YNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTM--LINLYGKAGKSFMALILFHE 66

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M     KP++  Y ++++ + + G   +A     +M+E  L P    Y+ L++ Y     
Sbjct: 67  MTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSP 126

Query: 225 YDEIDM------CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
           +              +M+  GC PD  +YN+L+  +  AG     E  +K M  KR+ + 
Sbjct: 127 FSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDM--KRVGIT 184

Query: 279 SS--TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
            +  + + +  AY   G ++K E+   ++  S   L   +++ +  +Y       RL   
Sbjct: 185 PTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLY------GRLGQF 238

Query: 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
           G                             ++ V+R ME      +++T NI++  Y + 
Sbjct: 239 GK----------------------------MEEVLRVMEKGSYVADISTYNILINRYGQA 270

Query: 397 KDFKHLRVLLSELPTRHVKPDIVT 420
              + +      LP++ +KPD+VT
Sbjct: 271 GXIERMEDFFQLLPSKGLKPDVVT 294



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 70/137 (51%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  ++A   F++M+   + P+++ +  +   YSK+G  N+    LN+M +  L   +   
Sbjct: 166 GFQDDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVL 225

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             ++  YG+   + +++  L++M+      D  TYN+LI  +  AG ++RME  ++ + +
Sbjct: 226 KSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPS 285

Query: 273 KRMHLRSSTMVAILDAY 289
           K +     T  + + AY
Sbjct: 286 KGLKPDVVTWTSRMGAY 302


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC +G + + +  F+++    L+P L  YN +IHG  K G+  EAL   N+M++  
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            ++P   TY+ LI   GK     E     + +   G  P+  TYN LI+ ++ +G  +   
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 265  GTYKSMLTKRMHLRSST 281
              Y  M+       SST
Sbjct: 1067 AAYGRMIVGGCRPNSST 1083



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 22/237 (9%)

Query: 92  LQILQHDGDWT--KDHFWAV------------IRFLKNSSRSRQIPQVFDMWKNIEKSRI 137
           +QIL   G     KD FW +            I  L     S     V ++W  ++    
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 138 NE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N+   +    +  LC+ G ++EA+  F EM+   + P    YNS+I G+ K  +FN AL 
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N M     +P   T+   I  +GK     +     ++MK  G  PD +  N ++   A
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 256 CAGLL---KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
             G L   KR+    K+M     ++  + M+       N    D+  K +  ++ +R
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN---ADEAMKIFAEMIENR 516



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 147/336 (43%), Gaps = 28/336 (8%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  +I+    +S + +  ++F +M +N     +   NS  +I ML + G   EA + F E
Sbjct: 489 YTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNS--LIDMLYKAGRGNEAWKIFYE 546

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++   L+P+   YN+++ G  + GK  E +  L  M   +  P   TY+ ++    K   
Sbjct: 547 LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCK--- 603

Query: 225 YDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK--RMEGTY--KSMLTKRMHL 277
             E++  L M   M ++GC PD  +YN ++      GL+K  R++  +     + K +  
Sbjct: 604 NGEVNYALDMLYSMTMNGCMPDLSSYNTVMY-----GLVKEDRLDEAFWMFCQMKKVLAP 658

Query: 278 RSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
             +T+  IL +++  G++ + +    + +L   + +    V  L E  +K     +  + 
Sbjct: 659 DYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEF 718

Query: 337 GDDLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            +++AS     + ++   ++ H C     L +H     +V++ E+  V     + N ++ 
Sbjct: 719 AENIASSGLLLDDLFLSPIIRHLCKHKEALAAHE----LVKKFENLGVSLKTGSYNALIC 774

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +          L SE+      PD  T  ++ DA
Sbjct: 775 GLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDA 810



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G  E+    F+ M    + P ++ Y  +I      G+ N+ L +  ++ +M L P   TY
Sbjct: 920  GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 213  DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
            + LI   GK    +E       M+  G +P+  TYN LI     AG        Y+ +L 
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 273  KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            K       T  A++  Y   G  +     Y R++
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMI 1073



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    I+  + +   +E+ ++  +EM     K +   YN+II G  K    +EA+   
Sbjct: 800 DEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLY 859

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++     SP   TY  L+    K    ++ +     M   GC P+   YN+L+  +  A
Sbjct: 860 YQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA 919

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +++   ++SM+ + M+    +   ++D     G L+    ++K+L +    L+ DL+
Sbjct: 920 GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTD--MGLEPDLI 977



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +    +I  L + G   EA+  ++ M    + P++  Y+ ++  + K       +  
Sbjct: 169 LNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGL 228

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM+   + P   +Y   I+  G+    +E    L+ M+ +GC PD +T  +LIQ    
Sbjct: 229 LGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCD 288

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           AG L   +  +  M          T + +LD
Sbjct: 289 AGRLADAKDVFWKMKASDQKPDRVTYITLLD 319



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           ++  ++   R   + QVFD M + I K+ +  F +  + G +  EG +  A  A   M+ 
Sbjct: 107 MLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCT--VFGAVGVEGGLRSAPVALPVMKE 164

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             +  +   YN +I+   K G   EA+     M    + P   TY  L+ A+GK +  + 
Sbjct: 165 AGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAET 224

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           +   L  M+  G  P+  +Y + I+    AG   R+E  Y+
Sbjct: 225 VVGLLGEMEARGVRPNVYSYTICIRVLGQAG---RLEEAYR 262



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           FLK    +R + ++F+   NI     N +     I    + G   +A++ ++ M+   + 
Sbjct: 391 FLKADRFNRAL-ELFNHM-NIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIV 448

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +   N++++G +K G+   A    +E+K M +SP + TY  +I+   K    DE    
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKI 508

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAG 258
              M  + C+PD +  N LI     AG
Sbjct: 509 FAEMIENRCAPDVLAMNSLIDMLYKAG 535



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 117  SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
             +S ++ +   ++ ++EK  I  N +    +I  L + G   EA + ++E+     KP++
Sbjct: 987  GKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNV 1046

Query: 175  EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
              YN++I GYS  G    A      M      P S TY
Sbjct: 1047 FTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 13/219 (5%)

Query: 94  ILQHDGDWTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLC 150
           ILQ D    +    +++   LK     + I    +  +NI  S +  ++     II  LC
Sbjct: 687 ILQPDSKVDRSSVHSLMEGILKRDGTEKSI----EFAENIASSGLLLDDLFLSPIIRHLC 742

Query: 151 E--EGLME-EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           +  E L   E V+ F+ + G +LK     YN++I G       + A    +EMK +   P
Sbjct: 743 KHKEALAAHELVKKFENL-GVSLKTG--SYNALICGLVDEDLIDIAEELFSEMKRLGCDP 799

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY  ++ A GK    +++    + M   G    ++TYN +I     + +L      Y
Sbjct: 800 DEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLY 859

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
             ++++       T   +LD  +  G ++  E  +  +L
Sbjct: 860 YQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEML 898


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 110/288 (38%), Gaps = 39/288 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++EA   F +M      P++  YN++++G  K  K   A   +  M +  
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 246

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-----PDHITYNLLIQEFACAGL 259
           ++P   TY  L+ A+ K    DE    L  M   GC+     PD +T+N+LI     AG 
Sbjct: 247 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN 306

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            ++    ++ M+ K +     T  A++D     G ++        + N   P        
Sbjct: 307 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP-------- 358

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
              V   N +   L         + GR E          AC          + EM S+  
Sbjct: 359 -PNVVTYNALVHGL--------CKSGRIE---------EAC--------QFLEEMVSSGC 392

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +  T   ++ A  +         L+SEL +    PD VT  IL D 
Sbjct: 393 VPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDG 440



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 11/246 (4%)

Query: 65  TLLVESYHEHQALNALIQRLNKKVS--CPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI 122
           ++LV+++ +   ++  ++ L+   S  C   +L  D    K  F  +I     +    Q 
Sbjct: 255 SVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPD----KVTFNILIAGACKAGNFEQA 310

Query: 123 PQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
             +F+  + KN++   +  F +  +I  LC+ G +E A      M    + P++  YN++
Sbjct: 311 SALFEEMVAKNLQPD-VMTFGA--LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 367

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           +HG  K G+  EA  FL EM      P S TY  L+ A  +    D+    +  +K  G 
Sbjct: 368 VHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGW 427

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            PD +TYN+L+     +G  ++     + M+ K     S T  A        G L    +
Sbjct: 428 DPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTME 487

Query: 301 FYKRLL 306
             + +L
Sbjct: 488 LLRVVL 493



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 1/200 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A+I  L  + +      + D+  N+     N      ++  LC+ G +EEA +  +EM
Sbjct: 329 FGALIDGLCKAGQVEAARDILDLMGNLGVPP-NVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
                 P    Y S+++   +  + ++AL  ++E+K     P + TY+ L+    K    
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKT 447

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++    L+ M   G  PD  T+         +G L       + +L K M   ++T  +I
Sbjct: 448 EQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 507

Query: 286 LDAYMNFGMLDKMEKFYKRL 305
           LD     G LD ++   K  
Sbjct: 508 LDWVCRSGKLDDVKAMIKEF 527



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 113/288 (39%), Gaps = 39/288 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++  LC  G    A+  F+ EM    + P++  YN+II+G  K       +    E+ E 
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
              P   TY+ LI +  K    +E       M   GC P+ +TY++LI      GL K  
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLIN-----GLCKVG 121

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE- 322
                  L + M  +S  ++  +  Y +F  LD + K       S T    +L+R L + 
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSF--LDGLCK------QSMTAEACELMRSLRDG 173

Query: 323 ---VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
              V      FS L D             L  C + +  AC        SV  +M +   
Sbjct: 174 SLRVSPDTVTFSTLID------------GLCKCGQ-IDEAC--------SVFDDMIAGGY 212

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             NV T N ++    K    +    ++  +  + V PD++T  +L DA
Sbjct: 213 VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDA 260


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 122/322 (37%), Gaps = 44/322 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I G L ++  ++ A+R  + M+    KP   +YN +++G    G+   A   L++MK   
Sbjct: 24  IHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDK 83

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +S    TY  LI+ Y       +     + MK  G SP+  TYN LIQ +   GL K   
Sbjct: 84  VSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEAL 143

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y  M          T    +  Y   G+L+ ME+    +     P  +     L +VY
Sbjct: 144 ELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVY 203

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            K   F +  +                                  ++REM  A  R N+ 
Sbjct: 204 AKKSYFVKAHE----------------------------------ILREMTEAGYRPNIW 229

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG--TGALEMWK 442
           T NI+L +  K +       L   L ++ V P+IVT   +      G  G  T A ++W 
Sbjct: 230 TYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL--YGRHGLYTEAAKLWD 287

Query: 443 RIGFLFKTVEINTDPLVLAVYG 464
            +      +E    P ++A  G
Sbjct: 288 EM------IEAGCIPCIIAYSG 303



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 92  LQILQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC 150
           L++++  G    +  +  ++  L NS R     ++ D  K  +K   N      +I    
Sbjct: 41  LEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKR-DKVSANLVTYTNLIKEYA 99

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             G +++  + FQEM+     P+   YN++I GY + G F EAL   +EM  +  +    
Sbjct: 100 NTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVH 159

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           TY+  I  YGK  + ++++  L  M   G  PD +TYN L+  +A
Sbjct: 160 TYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVR 160
           + + W     L ++ + + + +   +++N++   +  N      ++ +    GL  EA +
Sbjct: 225 RPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAK 284

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            + EM      P +  Y+ +I  Y   G + EAL    +M++  + P +  Y  L+ AYG
Sbjct: 285 LWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYG 344

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           K     E ++    M  +G  PD ITY +L++ FA AG L
Sbjct: 345 KAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +E  + EA + F+ ++   + P++  Y++++  Y + G + EA    +EM E    P   
Sbjct: 240 KEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y GLI++YG + MY E   C + M+  G  PD   Y  L+  +  AG  +  E  Y  M
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEM 359

Query: 271 LTKRMHLRSSTMVAILDAYMNFGML 295
             +       T   ++ A+ N G L
Sbjct: 360 TKEGFVPDGITYGILVRAFANAGRL 384



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 1/200 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+   N+ R +   ++F   K+  +S  N +    +I     +GL +EA+  + EM+G 
Sbjct: 94  LIKEYANTGRLQDCRKLFQEMKDKGESP-NSWTYNALIQGYGRKGLFKEALELYDEMDGV 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
                +  YN  I  Y K G   +    L+EM    + P   TY+ L+  Y K   + + 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L+ M   G  P+  TYN+++        +      ++++ +K +     T  A+L  
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 289 YMNFGMLDKMEKFYKRLLNS 308
           Y   G+  +  K +  ++ +
Sbjct: 273 YGRHGLYTEAAKLWDEMIEA 292



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EM     +P++  YN ++    K     EA      +K   + P   TY  ++  YG+
Sbjct: 216 LREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGR 275

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           + +Y E       M   GC P  I Y+ LI+ +   G+ +     ++ M    +   +  
Sbjct: 276 HGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKI 335

Query: 282 MVAILDAYMNFGMLDKMEKFY 302
             A++DAY   G   + E  Y
Sbjct: 336 YTALMDAYGKAGRCREAELLY 356


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 156/377 (41%), Gaps = 21/377 (5%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  R ++F    ++  LC+ G  + A+     M    L P +  YNS+I G  K+G+  E
Sbjct: 302 EGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEE 361

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A+  L++M   + SP + TY+ +I +  K    DE     +++   G  PD  T+N LIQ
Sbjct: 362 AVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQ 421

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               +   K     ++ M  K       T   ++D+  +   L++     K +  +    
Sbjct: 422 GLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCAR 481

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--V 370
              +   L + + KN      +++ D++  +    + V    L+   C  S R  D+  +
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLC-KSKRVEDAAQL 540

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           + +M    +R +  T N +L  + K  D K    ++  + +    PDIVT   L      
Sbjct: 541 MDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLIS---- 596

Query: 431 GFDGTGALEMWKRIGFLFKTVEINT--------DPLVLAVYGKG---HFLRYCEEVYSSL 479
           G    G +++  R   L +++++          +P++ A++ +      +R   E+    
Sbjct: 597 GLCKAGRVQVASR---LLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKS 653

Query: 480 EPYSREKKRWTYQNLID 496
           EP      +  Y+ L +
Sbjct: 654 EPPDAITYKIVYRGLCN 670



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F ++I+ L  SS  +    +F+  K  +  R +EF    +I  LC    +EEA+   +EM
Sbjct: 416 FNSLIQGLCLSSNHKSAMDLFEEMKG-KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM 474

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E      ++ IYN++I G+ K  +  EA    +EM+   +S  S TY+ LI    K K  
Sbjct: 475 ELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRV 534

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           ++    +  M ++G  PD  TYN L+  F   G +K+     ++M +
Sbjct: 535 EDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTS 581



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G +++A+   QE      +P    YN++++G  KIG    A+  ++ M    
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L P   TY+ LI    K    +E    L  M    CSP+ +TYN +I
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAII 385



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 37/286 (12%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           PS  +Y  I+    K G F      L EMK          +   +++YGK+++YDE+   
Sbjct: 95  PSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGI 154

Query: 232 LKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--------------- 275
           +K+M+ +    PD   YN+L+     A  LK +E  + SM+ +R+               
Sbjct: 155 VKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALC 214

Query: 276 ---HLRS-----------------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
               +R                  +T   I+  Y+  G LD   +  ++++    P  + 
Sbjct: 215 KAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDV 274

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREM 374
            V  L   + K     +      +  S   R +      L++  C + H +    VV  M
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM 334

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               +  ++ T N ++    K+ + +    +L ++ +R   P+ VT
Sbjct: 335 LLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 135/362 (37%), Gaps = 46/362 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   +  A+   +EM  + L P    + +I+ GY + G  + AL    +M E  
Sbjct: 209 LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG 268

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 T + LI  + K    D+    ++    +G  PD  TYN L+             
Sbjct: 269 CPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNG----------- 317

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                 L K  H + +  + ++DA M  G LD     Y  L++    L E       E  
Sbjct: 318 ------LCKIGHAKHA--MEVVDA-MLLGGLDPDIYTYNSLISGLCKLGE------IEEA 362

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRW 381
           +K         + D + SR      V    ++S  C      +D    + R + S  +  
Sbjct: 363 VK---------ILDQMVSRDCSPNAVTYNAIISSLC--KENRVDEATEIARLLTSKGILP 411

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           +V T N ++       + K    L  E+  +  +PD  T  +L D+         AL + 
Sbjct: 412 DVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLL 471

Query: 442 KRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           K +   G     V  NT   ++  + K   +   EE++  +E     +   TY  LID +
Sbjct: 472 KEMELNGCARNVVIYNT---LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGL 528

Query: 499 IK 500
            K
Sbjct: 529 CK 530



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 5/155 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  +I  L  S R     Q+ D    +E  R ++F    ++   C+ G +++A    Q M
Sbjct: 521 YNTLIDGLCKSKRVEDAAQLMDQMI-MEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
                 P +  Y ++I G  K G+   A  LL   +MK M L+P +  Y+ +IQA  K  
Sbjct: 580 TSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHA--YNPVIQALFKRN 637

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
              E     + M      PD ITY ++ +     G
Sbjct: 638 RTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGG 672


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +EEA   FQEM+   +KP+L IY  +I    K GK  +     + + +  L P 
Sbjct: 317 LCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPN 376

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  L+ A  K  +  E     + M+ DGC+PD   YN++IQ     G L+  + +  
Sbjct: 377 VYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQ-----GFLQHKDPSMA 431

Query: 269 SMLTKRMHLRSSTMVAILDAYMN 291
             L + M  R  +  A   A +N
Sbjct: 432 RQLVEEMVNRGFSADAATRALLN 454



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC EG M++ +  + +M    L+P++  YN II+  SK GK NEAL FL +M+++   P 
Sbjct: 142 LCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPN 201

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
              Y  LI  Y      DE      +M   GC+P+  TY  L+  + 
Sbjct: 202 VVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYC 248



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 117/271 (43%), Gaps = 21/271 (7%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L+PS+  + ++++G    GK ++ ++  ++M    L P   TY+ +I +  K    +E
Sbjct: 126 LGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANE 185

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               LK M+  GC P+ + Y+ LI  +   G +      +  M++K       T  ++++
Sbjct: 186 ALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMN 245

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI--- 344
            Y       K+E+  + +      L++ LV    ++     + S L   G  LA++    
Sbjct: 246 GYC------KIERIEEAVQLLDETLRKGLV---PDIVTFTTIISGLCRAGRPLAAQQLFR 296

Query: 345 -----GRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKM 396
                G T  +    +L    L  H  ++   ++ +EM+ + V+ N+    I++ +  K 
Sbjct: 297 YICAHGHTPNIMTYGVLLDG-LCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKC 355

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              K  + L S L    +KP++ T   L  A
Sbjct: 356 GKIKDGKELFSRLIDEGLKPNVYTYTALVGA 386



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 55/292 (18%), Positives = 111/292 (38%), Gaps = 3/292 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I EF+  K+   +   G  E  V   +E+E   ++  +   + +I+ +  + + +  L  
Sbjct: 62  IVEFS--KLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+++ ++ L P   T+  L+         D++ M    M + G  P+  TYN++I   + 
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           +G      G  K M              ++D Y   G +D+    +  +++         
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVREME 375
              L   Y K         L D+   +    ++V    ++S  C          + R + 
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYIC 299

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +     N+ T  ++L    K  + +    L  E+    VKP++V   IL D+
Sbjct: 300 AHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDS 351


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    + P   TY+ L+    K     E       M   G  P+  TY  L+Q +A  
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 2/201 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR 309
               G ++   ++++++++ R
Sbjct: 419 LCKSGRVEDAMRYFEQMIDER 439



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA + F  M    LKP +  Y +++ GY+  G   E    L+ M    + P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              +  LI AY K    D+  +    M+  G +PD +TY  +I     +G ++     ++
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
            M+ +R+   +    +++ +   F   DK + ++
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG +++A   + EM    + P++  Y+SII    K    ++A+  L  M +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M  DG  PD +TYN L+      G      
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC+E   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY  +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +              +    L    A++    E+              H  +D +VR   
Sbjct: 339 I--------------TTYGTLLQGYATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I    ++G +++A+  F +M    L P    Y ++I    K G+  +A+ + 
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
            +M +  LSP +  Y+ LI +   +  +D+
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDK 462


>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 313

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M    G  EE  + F +       P    YN++I GY + G+ NE  +  NE++   
Sbjct: 93  LISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKK 152

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +    TY+ LI  Y +    D++++ L  M+  G   + +  + LI  ++ AG   R+ 
Sbjct: 153 FNADVITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLA 212

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            T + +      L+ +T   ++  Y   G LDKME+ ++ ++N+
Sbjct: 213 KTMEVVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNA 256



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 32/287 (11%)

Query: 124 QVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEE---AVRAFQEMEGFALKPSLEIYNS 179
           QVF+ WK   KS++  E N ++   M+   G + +   A   F EME   +K +   YN+
Sbjct: 1   QVFN-WK---KSKLRWEVNPKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNA 56

Query: 180 IIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +IH Y +  +  +AL     MK  ++  P   TY+ LI  Y +    +E    +K + LD
Sbjct: 57  LIHSYGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATEE----MKKIFLD 112

Query: 239 GCS-----PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            C+     PD  TYN LI  +  AG L  ME T+  +  K+ +    T  A++  Y    
Sbjct: 113 -CTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARAN 171

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
            +DKME     +     P+    +  L   Y +   + RL    + +       +  W L
Sbjct: 172 AVDKMEVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVV------KDAGWML 225

Query: 354 RLLSHACLLSHRG-------IDSVVREMESAKVRWNVTTANIILLAY 393
           +  ++  L+S  G       ++   REM +A V+ +  T   ++ AY
Sbjct: 226 QPATYNILISEYGKVGYLDKMEQAFREMMNASVKPSFETFQYMINAY 272



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G+ L+P+   YN +I  Y K+G  ++      EM   ++ P  +T+  +I AY       
Sbjct: 222 GWMLQPA--TYNILISEYGKVGYLDKMEQAFREMMNASVKPSFETFQYMINAYEAADNET 279

Query: 227 EIDMCLKMMKLDGCSP 242
           ++D  L +M+  GC P
Sbjct: 280 QVDRILDLMRKAGCEP 295


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+ G ++EAV+  QEM    L+P ++ Y+ I+ GY  +GK  +A   + EM + +
Sbjct: 274 IVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRD 333

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + +Y   I+A       +E +   + M   GC PD  TY ++I  F   G +    
Sbjct: 334 CAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAAT 393

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              + M    +         I+D ++    L++  + Y+R+L
Sbjct: 394 HVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRIL 435



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM--KEMNLSPQSDTY 212
           +EEA+  +Q +    + PS   YN++I+   K+ K +EAL  L EM  ++  L P   TY
Sbjct: 424 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 483

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I   GK  M +     L  M  +G  PD  TY  LIQ  A AG + R     + ML
Sbjct: 484 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEML 542



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+EG M  A    + M+  A+KP+  IY  I+ G+ K  +  EAL     + +  
Sbjct: 379 IIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDG 438

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM--KLDGCSPDHITYNLLIQEFACAGLLKR 262
           + P + TY+ +I A  K K  DE    L+ M  + +   P  +TY+++I      G+ +R
Sbjct: 439 ILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 498



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 59/153 (38%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC    +++AV  F  +     +P+L  Y  ++ G  K  K   A     EM    
Sbjct: 169 ILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKG 228

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y  LI    K    DE    + +M   G  P  + Y  ++      G ++   
Sbjct: 229 YKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAV 288

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            T + M  +R+  R  T   I+  Y+  G ++K
Sbjct: 289 KTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEK 321



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 35/191 (18%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC+   +E A   F+EM     KP +  Y+S+I G SK G+ +EA   ++ 
Sbjct: 199 FTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDL 258

Query: 200 MKEMNLSPQS-----------------------------------DTYDGLIQAYGKYKM 224
           M      P +                                   DTY  ++  Y     
Sbjct: 259 MVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGK 318

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            ++    ++ M    C+PD I+Y + I+     G  +  E  +++M+ K       T   
Sbjct: 319 VEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGI 378

Query: 285 ILDAYMNFGML 295
           I+D +   G +
Sbjct: 379 IIDNFCKEGSM 389



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 68/378 (17%), Positives = 142/378 (37%), Gaps = 52/378 (13%)

Query: 52  SAPSLDYHSTKHTTLLVESYHEHQA-LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI 110
           SAP+ ++  T+H   L+    +  + + AL++R +  VS  L         ++D F  V+
Sbjct: 20  SAPTFEHEDTRHVESLLAILEDKASDVQALLERSHAAVSTKL---------SRDTFGGVL 70

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
             L+ +  +      F  W        +  F    ++  L   G + +A+  FQ      
Sbjct: 71  GRLRCTCNALG----FYHWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSIS-- 124

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +P++  +N ++ G++    F      L EMK   ++    T+  ++ A    +  D+  
Sbjct: 125 -EPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAV 183

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                +  + C P   TY +L+     A  ++R    ++ M+ K          +++D  
Sbjct: 184 SYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGL 243

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
              G +D+  K    L+ +R P                              + +  T +
Sbjct: 244 SKAGRVDEARKLVD-LMVARGPPP----------------------------TAVAYTSI 274

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           V  L      C      + + ++EM   ++R  V T + I+  Y+ M   +    ++ E+
Sbjct: 275 VAGL----CKCGRIQEAVKT-IQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEM 329

Query: 410 PTRHVKPDIVTIGILYDA 427
             R   PD ++  +  +A
Sbjct: 330 ADRDCAPDTISYTMFIEA 347



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 40/176 (22%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME--GFALKPS 173
           +S ++ +  ++++ I K  I  +      +I  LC+   M+EA+   +EM+     L+PS
Sbjct: 420 KSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPS 479

Query: 174 LEIYNSIIHGYSKIG-----------------------------------KFNEALLFLN 198
           +  Y+ IIHG  K+G                                   K + A+  L 
Sbjct: 480 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 539

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           EM +  + P   TY  L+Q   +  +    D+  +MM+ +G +P+  T+  + + F
Sbjct: 540 EMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMR-NGHTPNEFTFKAVEKGF 594



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  EEA + F+ M     KP +  Y  II  + K G    A   L  M +  + P    Y
Sbjct: 352 GRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIY 411

Query: 213 DGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLI 251
             ++  + K    +E +++  +++K DG  P  +TYN +I
Sbjct: 412 TMIMDGFVKSSRLEEALELYQRILK-DGILPSTVTYNTVI 450


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+   + Q   ++  + KSR++    N  +I+ +L ++ LM +AV  ++ M  F +KP++
Sbjct: 481 SKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTI 540

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+++  Y K GK  + L  L+EM+    +P   TY+ LI    K   +++    +  
Sbjct: 541 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 600

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG- 293
           M   G      TYN LI  +   GLL       + M+ K      +T  + +      G 
Sbjct: 601 MLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 660

Query: 294 MLDKMEKFYKRLLNSRTP 311
           M D M++    L N+  P
Sbjct: 661 MSDAMQQLSDMLANNLLP 678



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 25/296 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  ++ ++E+ +  F +M    L P ++  N I+         ++A+     M E  
Sbjct: 476 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFG 535

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P   TY+ L+ +Y K  K+   +D+ L  M+  GC+P+ +TYN+LI   +  G  ++ 
Sbjct: 536 IKPTIVTYNTLLDSYCKGGKVQQGLDL-LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQA 594

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           +G    ML   + + + T   ++  Y N           K LL     L+E++V K A  
Sbjct: 595 KGLIGEMLKTGLKVSAYTYNPLIYGYFN-----------KGLLAEALSLQEEMVLKGASP 643

Query: 324 YIKNY------------MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
            +  Y            M   +  L D LA+ +    + +   +  +  L +      + 
Sbjct: 644 TVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLF 703

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            E+ S  +   + T N +L    +  + +  + L  E+    + PDIVT  IL + 
Sbjct: 704 DELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 759



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G M +A++   +M    L P +  YN++I+GY ++G   +A L  +E++ + L P 
Sbjct: 655 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 714

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKM-MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
             TY+ L+    +     E+   LK+ M  +G +PD +TY +L+      G L   +  +
Sbjct: 715 IVTYNTLLDGLCRQGEL-EVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 773

Query: 268 KSMLTKRMHLRS 279
             ML + + L S
Sbjct: 774 DEMLHEGLELDS 785



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +G +E A +   EM    + P +  Y  +++G  K+G  + A  F +EM    L  +
Sbjct: 725 LCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--E 782

Query: 209 SDTYDGLIQAYGKYKMYDEIDM--CLKMMKLDGCSPDHITYNLLI 251
            D+Y    +  G+ K+ D        + M   G  PD I YN+++
Sbjct: 783 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVV 827


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS  + + F   K++E   +  + F    +I  LC+     EA     EM    LKP++ 
Sbjct: 291 RSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 350

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y ++I G+ + G  +EA   + EM    + P   TYD L++   K    D   + LK M
Sbjct: 351 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 410

Query: 236 KLDGCSPDHITYNLLIQ 252
             D   PD ITYNL+I+
Sbjct: 411 VRDSHRPDTITYNLIIE 427



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 129/315 (40%), Gaps = 25/315 (7%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           + N F    +I   C EG +  A   F +M    + P L  YNS+I G SK+G+  E+  
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +  +M+E  L P   TY GLI  Y K    +  +  ++ M   G  P+ + Y  L++ + 
Sbjct: 546 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 605

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL----NSRTP 311
            +  ++++  T+KSML + + L  + +  IL    N      ME  ++ L     N   P
Sbjct: 606 KSDDIEKVSSTFKSMLDQGVML-DNRIYGIL--IHNLSSSGNMEAAFRVLSGIEKNGSVP 662

Query: 312 ---LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID 368
              +   L+  L +   +   F  LD++     S+ G    + C   L     L   G  
Sbjct: 663 DVHVYSSLISGLCKTADREKAFGILDEM-----SKKGVDPNIVCYNALIDG--LCKSGDI 715

Query: 369 SVVREMESA----KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           S  R + ++     +  N  T   ++    K+ D  +   L +E+    + PD      +
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPD----AFV 771

Query: 425 YDARRIGFDGTGALE 439
           Y     G    G LE
Sbjct: 772 YSVLTTGCSSAGDLE 786



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 11/310 (3%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F +   +E + I  N +    +I  LC+ G  E+A    +EM    LKP+  +Y  +I 
Sbjct: 438 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 497

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY + G  + A    ++M ++N+ P    Y+ LI    K    +E       M+  G  P
Sbjct: 498 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 557

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           +  TY+ LI  +   G L+  E   + ML   +       + +L++Y     ++K+   +
Sbjct: 558 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 617

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSH 358
           K +L+    L      ++  + I N   S   +    + S I +   V  +     L+S 
Sbjct: 618 KSMLDQGVMLD----NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 673

Query: 359 ACLLSHR-GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C  + R     ++ EM    V  N+   N ++    K  D  + R + + +  + + P+
Sbjct: 674 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733

Query: 418 IVTIGILYDA 427
            VT   L D 
Sbjct: 734 CVTYTSLIDG 743



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQK-------------------- 144
            W V  F+  +  S   P V+     IE   ++ EF++ K                    
Sbjct: 228 LWKVREFMVGAGIS---PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNV 284

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +EEA    ++ME + L P    Y ++I+G  K  + NEA   L+EM    
Sbjct: 285 LIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE 344

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P    Y  LI  + +    DE    +K M   G  P+ ITY+ L++     GL K  +
Sbjct: 345 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR-----GLCKMGQ 399

Query: 265 GTYKSMLTKRM 275
               S+L K+M
Sbjct: 400 MDRASLLLKQM 410



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A+I  L  S RS +   + D     E  + N      +I     EG  +EA +  +EM
Sbjct: 317 YGALINGLCKSRRSNEAKALLDEMSCAEL-KPNVVVYANLIDGFMREGNADEAFKMIKEM 375

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P+   Y++++ G  K+G+ + A L L +M   +  P + TY+ +I+ + ++   
Sbjct: 376 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 435

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            +    L  M+  G SP+  TY+++I     +G  ++     + M TK +   +     +
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495

Query: 286 LDAYMNFG-------MLDKMEK 300
           +  Y   G       + DKM K
Sbjct: 496 ISGYCREGNVSLACEIFDKMTK 517



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           VR F  M G  + P +  Y+++I  Y K+ +F+ A   L EM+E      + TY+ LI  
Sbjct: 231 VREF--MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 288

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--- 275
             +    +E     K M+  G  PD  TY  LI      GL K         L   M   
Sbjct: 289 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALIN-----GLCKSRRSNEAKALLDEMSCA 343

Query: 276 HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRT-PLK---EDLVRKLAEVYIKNYM 329
            L+ + +V   ++D +M  G  D+  K  K ++ +   P K   ++LVR L     K   
Sbjct: 344 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLC----KMGQ 399

Query: 330 FSRLDDLGDDLASRIGRTE-LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
             R   L   +     R + + + L +  H    S +    ++ EME+A +  NV T +I
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           ++    +  + +    LL E+ T+ +KP+
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPN 488



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 92  LQILQHDGDWTKDHFWA--VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML 149
           L  ++ +G     H ++  +    K + R +    + +M K      I  +N+  +I  L
Sbjct: 652 LSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNA--LIDGL 709

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F  +    L P+   Y S+I G  K+G  + A    NEM    ++P +
Sbjct: 710 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 769

Query: 210 DTY 212
             Y
Sbjct: 770 FVY 772


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+   + +A   + EM    + P++  YN++I+G+  +G   EA   LNEMK  N
Sbjct: 239 IIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKN 298

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T++ LI A GK    DE     + MK     P+ +TY  LI        L+R  
Sbjct: 299 INPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 358

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              K M  + +     +   +LDA    G L+  ++F++ LL
Sbjct: 359 ALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLL 400



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 4/181 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +++++    D++  +    I  N F    +I   C  G ++EA     EM+   + P + 
Sbjct: 245 KNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVY 304

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKM 234
            +N +I    K GK +EA+    EMK  N+ P   TY  LI    K + +   I +C K 
Sbjct: 305 TFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC-KK 363

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           MK  G  PD  +Y +L+      G L+  +  ++ +L K  HL   T   +++     G+
Sbjct: 364 MKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 423

Query: 295 L 295
            
Sbjct: 424 F 424



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++++ +   +I  LC+ G  +   R  +++EG ++KP + +Y +IIH   K  +  +A  
Sbjct: 195 QLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACD 254

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM    +SP   TY+ LI  +       E    L  MKL   +PD  T+N+LI    
Sbjct: 255 LYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALG 314

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             G +      ++ M  K M     T  +++D 
Sbjct: 315 KEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDG 347



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 12/202 (5%)

Query: 124 QVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F +   ++   IN   +    +I  L +EG ++EA+  F+EM+   + P++  Y S+I
Sbjct: 286 EAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLI 345

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            G  K      A+    +MKE  + P   +Y  L+ A  K    +      + + + G  
Sbjct: 346 DGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYH 405

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
            +  TYN++I     AGL   +      M  K     + T   I+ A       DK EKF
Sbjct: 406 LNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKF 465

Query: 302 YKRLLNSRTPLKEDLVRKLAEV 323
                     L+E + R L EV
Sbjct: 466 ----------LREMIARGLLEV 477


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+   +EEA+   QEM+G   +P +  Y +II  Y +  +F +    L+EM+     P S
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK- 268
            TY  ++ +    K ++E       MK  GC PD + YN LI   A AG L+  E  ++ 
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            M    + + +ST  +++  Y +    DK  +  K + +S
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 6/210 (2%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V++M   +E   S  N      I+  L  +   EEA+R    M+    KP    YN +I
Sbjct: 277 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 336

Query: 182 HGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDG 239
           H  ++ G+  EA  +F  EM E+ +S  + TY+ +I  Y  +   D+ I++  +M   + 
Sbjct: 337 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 396

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYMNFGMLDKM 298
           C+PD  TY  L++     G +  +    K M+TK  + L  ST   ++       M +  
Sbjct: 397 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWA 456

Query: 299 EKFYKRLLNSR-TPLKEDLVRKLAEVYIKN 327
              ++ +++   TP     +  L EV  KN
Sbjct: 457 YCLFEEMISQDITPRHRTCLLLLEEVKKKN 486



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I  L   G +EEA R F+ EM    +  +   YNS+I  Y    + ++A+  L EM+  
Sbjct: 335 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394

Query: 204 NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNLLIQEFACAGLLK 261
           NL +P   TY  L+++  K     E+   LK M+     S D  TY  LIQ    A + +
Sbjct: 395 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 454

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                ++ M+++ +  R  T + +L+      M +  E+ 
Sbjct: 455 WAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERI 494


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 132 IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IEK  R N  +   +I + C EG M EA R F+EM G   +PSL  YN ++ GY K G  
Sbjct: 380 IEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSI 439

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITY 247
            EA  F NEM++  L P   +Y  L+     + +  ++D+ L++   MK  G  P+ + Y
Sbjct: 440 REAERFKNEMEKKGLVPDIYSYAALVHG---HCVNGKVDVALRLFEEMKQRGSKPNLVAY 496

Query: 248 NLLIQEFACAGLLKRMEGTYKSML 271
             LI   A  G  +     Y +ML
Sbjct: 497 TALISGLAKEGRSEEAFQLYDNML 520



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/256 (19%), Positives = 104/256 (40%), Gaps = 37/256 (14%)

Query: 82  QRLNKKVSCPLQILQHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF 140
           ++ + +V+  L++++++G + T   +  ++  L  +    ++  VF+  K+   S    F
Sbjct: 191 EKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYF 250

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            S  +I   C  G +  A   F E  G  ++P+   Y ++I+G+ KIG+   A + + +M
Sbjct: 251 YSS-VINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDM 309

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLD------------------- 238
           +   +      ++ +I  Y +  M D   EI M ++ M ++                   
Sbjct: 310 QVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRM 369

Query: 239 -------------GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
                        G  P+H++Y  LI      G +      ++ M          T   +
Sbjct: 370 DEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVM 429

Query: 286 LDAYMNFGMLDKMEKF 301
           +D Y+  G + + E+F
Sbjct: 430 MDGYIKKGSIREAERF 445



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++ GY K G+   A   L+EM    +   +  Y+ L+ AY + K  D +   LK+M+ +G
Sbjct: 149 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEG 208

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P   TY +L+   + A  + ++E  ++ M +K +        ++++AY   G + +  
Sbjct: 209 IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRAS 268

Query: 300 KFY 302
           + +
Sbjct: 269 EVF 271



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/364 (17%), Positives = 145/364 (39%), Gaps = 15/364 (4%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +   ++  ++   C+ G +  A +   EM    +K +   YNS++  Y++    +     
Sbjct: 141 VTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEM 200

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M+   + P   TY  L+      +   +++   + MK    S D   Y+ +I  +  
Sbjct: 201 LKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCR 260

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG ++R    +   +   +     T  A+++ +   G ++  E     +      + + +
Sbjct: 261 AGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIV 320

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREM 374
              + + Y +  M  +  ++   +  ++G    V+    L+     ++R  ++  ++R M
Sbjct: 321 FNTMIDGYCRKNMVDKALEI-KMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIM 379

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
               VR N  +   ++  +    D    R L  E+     +P +VT  ++ D    G+  
Sbjct: 380 IEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMD----GYIK 435

Query: 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR-YC--EEVYSSLEPYSREKKRWTY 491
            G++   +R    FK  E+    LV  +Y     +  +C   +V  +L  +   K+R + 
Sbjct: 436 KGSIREAER----FKN-EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSK 490

Query: 492 QNLI 495
            NL+
Sbjct: 491 PNLV 494



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++ A+R F+EM+    KP+L  Y ++I G +K G+  EA    + M    L+P  
Sbjct: 469 CVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDD 528

Query: 210 DTYDGLI 216
             Y  L+
Sbjct: 529 ALYSALV 535


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 8/183 (4%)

Query: 117 SRSRQ---IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +R+RQ   + ++FD+         N F    +I  LC+EG + EA   F  M+     P 
Sbjct: 180 ARNRQGGLVRRLFDLLP-----VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPD 234

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YNS+I GY K G   E    ++EM++   +    TY+ LI  + K+   ++      
Sbjct: 235 VVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFG 294

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            MK  G   + +T++  +  F   GL++     +  M  + M     T  +++D     G
Sbjct: 295 EMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 294 MLD 296
            LD
Sbjct: 355 RLD 357



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P++  +N +I    K G+  EA      MK M  SP   TY+ LI  YGK    +E++  
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           +  M+  GC+ D +TYN LI  F+  G +++    +  M  + +     T    +DA+  
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 292 FGMLDKMEKFYKRL 305
            G++ +  K + ++
Sbjct: 318 EGLVQEAMKLFAQM 331



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 2/172 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G + EA+  F +M    L P+++ Y ++I G+ KIG  N+A+  +NEM +  
Sbjct: 521 LIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580

Query: 205 LSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           +S     Y  LI  Y K   + D   +  KM++  G   D   Y   I  F    +++  
Sbjct: 581 MSLDKVVYTSLIDGYMKQANLQDAFALKTKMIE-SGLQLDLYCYTCFISGFCNMNMMQEA 639

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            G    M+   +    +    ++  Y   G +++       + +  +   ED
Sbjct: 640 RGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCTED 691



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           +   C+EGL++EA++ F +M    + P+   Y S++ G  K G+ ++A++ L+EM    L
Sbjct: 312 VDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 371

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            P   TY  ++    K     E D  L +M+  G   + + Y  LI 
Sbjct: 372 VPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIH 418



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 62/142 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++  ++EA     +M G  L+P+  IY +I+    K GK +EA+  L+++ +    P 
Sbjct: 455 LCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPN 514

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  LI    K     E       M+  G  P+   Y  LI  F   G L +      
Sbjct: 515 VVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMN 574

Query: 269 SMLTKRMHLRSSTMVAILDAYM 290
            M+ K M L      +++D YM
Sbjct: 575 EMIDKGMSLDKVVYTSLIDGYM 596



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 1/179 (0%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R N      I+  L + G   EAV    ++     +P++  Y ++I G  K G  +EA+ 
Sbjct: 477 RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS 536

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             N+M+E+ L P    Y  LI  + K    ++    +  M   G S D + Y  LI  + 
Sbjct: 537 HFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYM 596

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLK 313
               L+        M+   + L        +  + N  M+ +       ++ +  TP K
Sbjct: 597 KQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDK 655



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 107/307 (34%), Gaps = 52/307 (16%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+EG + EA      ME   +K +  +Y ++IHG+        AL  LN+MK   +   
Sbjct: 385 LCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELD 444

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--------------------------- 241
              Y  LI    K +  DE    L   K+ GC                            
Sbjct: 445 VSLYGTLIWGLCKDQKVDEAKSLLH--KMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 242 ----------PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
                     P+ +TY  LI     AG +      +  M    +        A++D +  
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCK 562

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
            G L+K       +++    L + +   L + Y+K        +L D  A +    E   
Sbjct: 563 IGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQA------NLQDAFALKTKMIESGL 616

Query: 352 CLRLLSHACLLSH-------RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
            L L  + C +S        +    V+ EM    +  + T  N ++  Y K+ + +    
Sbjct: 617 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASS 676

Query: 405 LLSELPT 411
           L +E+ +
Sbjct: 677 LQNEMES 683



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           V +M K+   + +  +N+  +I    + G ME+A   F EM+   +  ++  +++ +  +
Sbjct: 258 VSEMRKSGCAADVVTYNA--LINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAF 315

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G   EA+    +M+   + P   TY  L+    K    D+  + L  M   G  P+ 
Sbjct: 316 CKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNV 375

Query: 245 ITYNLLI 251
           +TY +++
Sbjct: 376 VTYTVMV 382


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 121 QIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIY 177
            I Q F+M + + K   + N +    +I  LC++G  E+A R F ++      KP++  Y
Sbjct: 316 SIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTY 375

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            S+IHGY K  K N A + L+ MKE  L P + TY  LI  + K   +++    + +M  
Sbjct: 376 TSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGK 435

Query: 238 DGCSPDHITYNLLIQEFACAG 258
           +G S +  TYN  I      G
Sbjct: 436 EGFSANIFTYNAFIDSLCKKG 456



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M+K   +  ++ +N+  +I     +  MEE+ + F E  G  L P+ E Y S+I GY + 
Sbjct: 503 MFKAGVQPDMHTYNT--LIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRD 560

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              + AL F N M +   +P S TY  LI    K    DE     + M   G SP  +T 
Sbjct: 561 RNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTR 620

Query: 248 NLLIQEFA 255
             L  E+ 
Sbjct: 621 LTLAYEYC 628



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 3/155 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   CE+G        F +     LKP+L  + S+I+G  K G   +A   L EM +  
Sbjct: 272 MISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKG 331

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE--IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             P   T+  LI    K K + E    + LK+++ D   P+  TY  +I  +     L R
Sbjct: 332 WKPNVYTHTALIDGLCK-KGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNR 390

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            E     M  + +   + T   ++D +   G  +K
Sbjct: 391 AEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEK 425



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 54/310 (17%), Positives = 125/310 (40%), Gaps = 19/310 (6%)

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           E+ + ++  +++IGKF EA+  + EM+   L     T + +    G+  +    +     
Sbjct: 162 EVMDCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDE 221

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M++ G  PD ++Y L+   +   G +   +   K M+ +   + ++T   ++  +   G 
Sbjct: 222 MRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGF 281

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVR--KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
             ++  ++ + +     LK +L+    L     K     +  ++ +++  +       W 
Sbjct: 282 ASRVFWYFDKWV--ELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKK------GWK 333

Query: 353 LRLLSHACLL--------SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
             + +H  L+        + +     ++ + S   + NV T   ++  Y K        +
Sbjct: 334 PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEM 393

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT-DPLVLAVY 463
           LLS +  + + P+  T   L D      +   A E+   +G    +  I T +  + ++ 
Sbjct: 394 LLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLC 453

Query: 464 GKGHFLRYCE 473
            KG FL  C+
Sbjct: 454 KKGRFLEACK 463



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 50/119 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  E G  +EAV    EME   L  ++   N +     ++G    A    +EM+   
Sbjct: 167 MVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRG 226

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P S +Y  +  AY +     + D  LK M   G   D+ T  L+I  F   G   R+
Sbjct: 227 VCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRV 285


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 41/290 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E G ME+AV+A  +M+   L P+   YN++I GY   GK   +   L+ 
Sbjct: 118 FNA--VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDL 175

Query: 200 MKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           M E   +++ P   T++ L+QA+ K K  +E    +K M+  G  PD +TYN +   +  
Sbjct: 176 MLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 257 AGLLKRMEG--TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G   R E     K ++ ++      T   ++  Y   G +    +F +R+   R     
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVE--- 292

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
                 A + + N + +   ++ D                           GID V+  M
Sbjct: 293 ------ANLVVFNSLINGFVEVMD-------------------------RDGIDEVLTLM 321

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +   V+ +V T + ++ A+      +    +  E+    VKPD     IL
Sbjct: 322 KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 371



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP+      ++ GY + G+  + L F+  MKEM +      ++ LI  + +    D ID 
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDE 316

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            L +MK      D ITY+ ++  ++ AG +++    +K M+   +   +     +   Y+
Sbjct: 317 VLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYV 376

Query: 291 NFGMLDKMEKFYKRLLNSRTP 311
                 K E+  + L+    P
Sbjct: 377 RAKEPKKAEELLETLIVESRP 397



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P++ I+ ++I G+   G  ++A+   N+M +  +SP   T++ L+  Y + K   + + 
Sbjct: 396 RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEE 455

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            L+MM+  G  P++ T+ LL + +  AGL
Sbjct: 456 VLQMMRGCGVKPENSTFLLLAEAWRVAGL 484



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ +L E G   EA   F+ +     +PSL  Y +++   +   ++      ++E+++ 
Sbjct: 50  KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109

Query: 204 NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                S  ++ +I A+ +   M D +   LKM +L G +P   TYN LI+ +  AG  +R
Sbjct: 110 GTKLDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 168

Query: 263 MEGTYKSMLTKR---MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
                  ML +    +     T   ++ A+     +++  +  K++      ++ D V  
Sbjct: 169 SSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKM--EECGVRPDTVTY 226

Query: 318 RKLAEVYIKNYMFSRLDD------LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV- 370
             +A  Y++     R +       +  + A   GRT    C  ++   C    R  D + 
Sbjct: 227 NTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRT----CGIVVGGYC-REGRVRDGLR 281

Query: 371 -VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
            VR M+  +V  N+   N ++  ++++ D   +  +L+ +   +VK D++T   + +A  
Sbjct: 282 FVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNA-- 339

Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL-EPYSREKKR 488
                      W   G++ K  ++  + +   V    H        YS L + Y R K+ 
Sbjct: 340 -----------WSSAGYMEKAAQVFKEMVKAGVKPDAH-------AYSILAKGYVRAKEP 381

Query: 489 WTYQNLIDLVIKHNGKNL 506
              + L++ +I  +  N+
Sbjct: 382 KKAEELLETLIVESRPNV 399



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 55/105 (52%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I +SR N      +I   C  G M++A+R F +M  F + P+++ + +++ GY ++ +  
Sbjct: 392 IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 451

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +A   L  M+   + P++ T+  L +A+    + DE +  +  +K
Sbjct: 452 KAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496


>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 821

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 166/412 (40%), Gaps = 74/412 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G ++EA + F EM    + P+   +N++I+     G+  E  L + +M+E+ 
Sbjct: 287 LIDTYGKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKMEELR 346

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLK---MMKLDGCSPDHITYNLLIQEFACAGLLK 261
            SP + TY+ LI  + K   +D+I M  K    MK     PD ++Y  L+  ++   +++
Sbjct: 347 CSPNTRTYNILISLHAK---HDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIR 403

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
             E   K M  +R+ +   T  A+   Y+  GMLD+   ++ R   +            +
Sbjct: 404 EAEELVKEMDKRRLEIDQYTQSALTRMYIEAGMLDRSLLWFLRFHVAGN--------MTS 455

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWC-----LRLLSHACLLSHRGI--------- 367
           E Y  N     +D  G+   +       +WC     L +L    ++   GI         
Sbjct: 456 ECYAAN-----IDAYGEHGHTLEAEKVFIWCQKQKNLSVLEFNVMIKAYGIGKCYEKACQ 510

Query: 368 --DSV-------------------------------VREMESAKVRWNVTTANIILLAYL 394
             DS+                               +++M+ A +  +      ++ ++ 
Sbjct: 511 LFDSMEKHGVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVSDCIPYCAVISSFA 570

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILY----DARRIGFDGTGALEMWKRIGFLFKT 450
           K+   +    +  E+    V+PD++  GIL     DA R+  +  G ++  K+ G    T
Sbjct: 571 KLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVK-EAIGYVDEMKKAGLPGNT 629

Query: 451 VEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           V  N+   ++ +Y K   L   +E Y  L+        ++   +IDL +K +
Sbjct: 630 VIYNS---LIKLYAKIDNLEKAKEAYKLLQLSDEGPGVYSSNCMIDLYVKRS 678



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/126 (19%), Positives = 63/126 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +E     ++EM    ++P + ++  +I+ +S  G+  EA+ +++EMK+  
Sbjct: 565 VISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMKKAG 624

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L   +  Y+ LI+ Y K    ++     K+++L    P   + N +I  +    ++ + +
Sbjct: 625 LPGNTVIYNSLIKLYAKIDNLEKAKEAYKLLQLSDEGPGVYSSNCMIDLYVKRSMVDQAK 684

Query: 265 GTYKSM 270
             ++++
Sbjct: 685 EIFETL 690



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN ++    +  ++       NEM    ++    TY  LI  Y K    D+    L MM 
Sbjct: 150 YNIMLRSLGRARQWRRVESLWNEMNARGIAATCSTYGTLIDVYSKGGRRDDALSWLNMML 209

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRME------GTYKSMLTKRMHLRSSTMV 283
             G  PD +T  +++Q +  AG  ++ E       + K + +K   LRS+  V
Sbjct: 210 GQGVQPDEVTMVIVVQLYKKAGEFQKGEEFFRKWSSGKPLRSKSKPLRSNDNV 262


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    + P   TY+ L+    K     E       M   G  P+  TY  L+Q +A  
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA   L  
Sbjct: 482 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M  + + P   TY+ LI  Y K    ++  +  + M+  G SPD ITYN+++Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 162/394 (41%), Gaps = 50/394 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR-TP--------------------LKEDLVRKLAE-VYIK 326
               G ++   ++++++++ R +P                     KE ++  L   + + 
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLD 478

Query: 327 NYMFSRLDDL----GD--------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR- 372
              F+ + D     G         DL  RIG + +++    L+   CL     +D   + 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKL 536

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYD 426
              M S  ++ +  T N ++  Y K+   +   VL  E+ +  V PDI+T  I    L+ 
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            RR       A E++  I      +E++T  ++L
Sbjct: 597 TRRT----AAAKELYVGITESGTQLELSTYNIIL 626



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 129/289 (44%), Gaps = 13/289 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+R F++M    L P   +YNS+IH      K+++A   + EM +  
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  PD ITY+ LI  +  AG +    
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               SM++  M     T   +++ Y     ++     ++ + +S   +  D++     + 
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS--GVSPDIITY--NII 590

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVREMES---A 377
           ++    +R      +L   +G TE    L L ++  +L     +   D  +R  ++    
Sbjct: 591 LQGLFQTRRTAAAKEL--YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            ++    T NI++ A LK+      + L + L    + PD+ T  ++ +
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG +++A   + EM    + P++  Y+SII    K    ++A+  L  M +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M  DG  PD +TYN L+      G      
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC+E   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY  +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +        ++ Y            A++    E+              H  +D +VR   
Sbjct: 339 ITTY--GTLLQGY------------ATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS  + + F   K++E   +  + F    +I  LC+     EA     EM    LKP++ 
Sbjct: 269 RSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 328

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y ++I G+ + G  +EA   + EM    + P   TYD L++   K    D   + LK M
Sbjct: 329 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 388

Query: 236 KLDGCSPDHITYNLLIQ 252
             D   PD ITYNL+I+
Sbjct: 389 VRDSHRPDTITYNLIIE 405



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           + N F    +I   C EG +  A   F +M    + P L  YNS+I G SK+G+  E+  
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +  +M+E  L P   TY GLI  Y K    +  +  ++ M   G  P+ + Y  L++ + 
Sbjct: 524 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 583

Query: 256 CAGLLKRMEGTYKSMLTKRMHL 277
            +  ++++  T+KSML + + L
Sbjct: 584 KSDDIEKVSSTFKSMLDQGVML 605



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 11/310 (3%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F +   +E + I  N +    +I  LC+ G  E+A    +EM    LKP+  +Y  +I 
Sbjct: 416 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 475

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY + G  + A    ++M ++N+ P    Y+ LI    K    +E       M+  G  P
Sbjct: 476 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 535

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           +  TY+ LI  +   G L+  E   + ML   +       + +L++Y     ++K+   +
Sbjct: 536 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 595

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSH 358
           K +L+    L      ++  + I N   S   +    + S I +   V  +     L+S 
Sbjct: 596 KSMLDQGVMLD----NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 651

Query: 359 ACLLSHR-GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C  + R     ++ EM    V  N+   N ++    K  D  + R + + +  + + P+
Sbjct: 652 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 711

Query: 418 IVTIGILYDA 427
            VT   L D 
Sbjct: 712 CVTYTSLIDG 721



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I  LC  G +EEA    ++ME + L P    Y ++I+G  K  + NEA   
Sbjct: 255 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 314

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+EM    L P    Y  LI  + +    DE    +K M   G  P+ ITY+ L++    
Sbjct: 315 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR---- 370

Query: 257 AGLLKRMEGTYKSMLTKRM 275
            GL K  +    S+L K+M
Sbjct: 371 -GLCKMGQMDRASLLLKQM 388



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A+I  L  S RS +   + D     E  + N      +I     EG  +EA +  +EM
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSCAEL-KPNVVVYANLIDGFMREGNADEAFKMIKEM 353

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P+   Y++++ G  K+G+ + A L L +M   +  P + TY+ +I+ + ++   
Sbjct: 354 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 413

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            +    L  M+  G SP+  TY+++I     +G  ++     + M TK +   +     +
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473

Query: 286 LDAYMNFG-------MLDKMEK 300
           +  Y   G       + DKM K
Sbjct: 474 ISGYCREGNVSLACEIFDKMTK 495



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 19/251 (7%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           + S +  Y K+ +F+ A   L EM+E      + TY+ LI    +    +E     K M+
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM---HLRSSTMV--AILDAYMN 291
             G  PD  TY  LI      GL K         L   M    L+ + +V   ++D +M 
Sbjct: 285 DYGLVPDGFTYGALIN-----GLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 339

Query: 292 FGMLDKMEKFYKRLLNSRT-PLK---EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
            G  D+  K  K ++ +   P K   ++LVR L     K     R   L   +     R 
Sbjct: 340 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLC----KMGQMDRASLLLKQMVRDSHRP 395

Query: 348 E-LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           + + + L +  H    S +    ++ EME+A +  NV T +I++    +  + +    LL
Sbjct: 396 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 455

Query: 407 SELPTRHVKPD 417
            E+ T+ +KP+
Sbjct: 456 EEMTTKGLKPN 466



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 50/133 (37%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           IY  +IH  S  G    A   L+ +++    P    Y  LI    K    ++    L  M
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G  P+ + YN LI     +G +      + S+L K +     T  +++D     G +
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728

Query: 296 DKMEKFYKRLLNS 308
                 Y  +L +
Sbjct: 729 SNAFYLYNEMLAT 741



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 92  LQILQHDGDWTKDHFWA--VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML 149
           L  ++ +G     H ++  +    K + R +    + +M K      I  +N+  +I  L
Sbjct: 630 LSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNA--LIDGL 687

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F  +    L P+   Y S+I G  K+G  + A    NEM    ++P +
Sbjct: 688 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 747

Query: 210 DTY 212
             Y
Sbjct: 748 FVY 750


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 41/290 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E G ME+AV+A  +M+   L P+   YN++I GY   GK   +   L+ 
Sbjct: 118 FNA--VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDL 175

Query: 200 MKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           M E   +++ P   T++ L+QA+ K K  +E    +K M+  G  PD +TYN +   +  
Sbjct: 176 MLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 257 AGLLKRMEG--TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G   R E     K ++ ++      T   ++  Y   G +    +F +R+   R     
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVE--- 292

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
                 A + + N + +   ++ D                           GID V+  M
Sbjct: 293 ------ANLVVFNSLINGFVEVMD-------------------------RDGIDEVLTLM 321

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +   V+ +V T + ++ A+      +    +  E+    VKPD     IL
Sbjct: 322 KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 371



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP+      ++ GY + G+  + L F+  MKEM +      ++ LI  + +    D ID 
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDE 316

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            L +MK      D ITY+ ++  ++ AG +++    +K M+   +   +     +   Y+
Sbjct: 317 VLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYV 376

Query: 291 NFGMLDKMEKFYKRLLNSRTP 311
                 K E+  + L+    P
Sbjct: 377 RAKGPKKAEELLETLIVESRP 397



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P++ I+ ++I G+   G  ++A+   N+M +  +SP   T++ L+  Y + K   + + 
Sbjct: 396 RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEE 455

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            L+MM+  G  P++ T+ LL + +  AGL
Sbjct: 456 VLQMMRGCGVKPENSTFLLLAEAWRVAGL 484



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 157/378 (41%), Gaps = 43/378 (11%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ +L E G   EA   F+ +     +PSL  Y +++   +   ++      ++E+++ 
Sbjct: 50  KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109

Query: 204 NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
                S  ++ +I A+ +   M D +   LKM +L G +P   TYN LI+ +  AG  +R
Sbjct: 110 GTKLDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 168

Query: 263 MEGTYKSMLTKR---MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
                  ML +    +     T   ++ A+     +++  +  K++      ++ D V  
Sbjct: 169 SSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKM--EECGVRPDTVTY 226

Query: 318 RKLAEVYIKNYMFSRLDD------LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV- 370
             +A  Y++     R +       +  + A   GRT    C  ++   C    R  D + 
Sbjct: 227 NTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRT----CGIVVGGYC-REGRVRDGLR 281

Query: 371 -VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
            VR M+  +V  N+   N ++  ++++ D   +  +L+ +   +VK D++T   + +A  
Sbjct: 282 FVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNA-- 339

Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL-EPYSREKKR 488
                      W   G++ K  ++  + +   V    H        YS L + Y R K  
Sbjct: 340 -----------WSSAGYMEKAAQVFKEMVKAGVKPDAH-------AYSILAKGYVRAKGP 381

Query: 489 WTYQNLIDLVIKHNGKNL 506
              + L++ +I  +  N+
Sbjct: 382 KKAEELLETLIVESRPNV 399



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 55/105 (52%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I +SR N      +I   C  G M++A+R F +M  F + P+++ + +++ GY ++ +  
Sbjct: 392 IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 451

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +A   L  M+   + P++ T+  L +A+    + DE +  +  +K
Sbjct: 452 KAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           N+ +  +  +N+  II  +C+  L+ EA   F EM    + P +  Y+++I G+  +GK 
Sbjct: 219 NLVQPNVVMYNT--IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKL 276

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +A+   N+M   N+ P   T++ L+ A+ K     E      MM   G  P+ +TYN L
Sbjct: 277 KDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           +  +     + + +  + +M    ++    +   +++ +      D+    +K +   R 
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM--HRK 394

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
            +  D+V   + +               D  S+ GR  + + L+L               
Sbjct: 395 NIIPDVVTYSSLI---------------DGLSKSGR--ISYALQL--------------- 422

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           V +M    V  N+ T N IL A  K         LL++   +  +PDI T  IL      
Sbjct: 423 VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIK---- 478

Query: 431 GFDGTGALEMWKRI 444
           G   +G LE  +++
Sbjct: 479 GLCQSGKLEDARKV 492



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+    +EA+  F+EM    + P +  Y+S+I G SK G+ + AL  +++M +  
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++ A  K    D+    L   K  G  PD  TY++LI+    +G L+   
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  +L       ++  +   G+ ++
Sbjct: 491 KVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNE 523



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +G +++A     ++           Y ++IHG  K+G+   AL  L  +    + P 
Sbjct: 165 LCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I +  K K+ +E       M   G SPD +TY+ LI  F   G LK     + 
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFN 284

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M+ + +     T   +++A+   G + + +  +  ++  +  +K + V           
Sbjct: 285 KMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMM--KQGIKPNFVT---------- 332

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
            ++ L D G  L   + + +                    S+   M    V  ++ + +I
Sbjct: 333 -YNSLMD-GYCLVKEVNKAK--------------------SIFNTMAQGGVNPDIQSYSI 370

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++  + K+K F     L  E+  +++ PD+VT   L D 
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 96/232 (41%), Gaps = 6/232 (2%)

Query: 63  HTTLLVESYHEHQ-ALNALIQRLNK--KVSCPLQILQH-DGDWTKDHFWAVIRFLKNSSR 118
           H  ++   +H  Q +   LI  L K  +    L +LQ  DG+  + +       + +  +
Sbjct: 178 HDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCK 237

Query: 119 SRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            + + + FD++  +    I+        +I   C  G +++A+  F +M    +KP +  
Sbjct: 238 VKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYT 297

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +N +++ + K GK  E     + M +  + P   TY+ L+  Y   K  ++       M 
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMA 357

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
             G +PD  +Y+++I  F            +K M  K +     T  +++D 
Sbjct: 358 QGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G +E+A + F+++  +G+ L   +  Y  +I G+   G FNEAL  L++M++
Sbjct: 476 LIKGLCQSGKLEDARKVFEDLLVKGYNL--DVYAYTIMIQGFCVEGLFNEALALLSKMED 533

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
               P + TY+ +I +  K    DE DM  K+++
Sbjct: 534 NGCIPDAKTYEIIILSLFK---KDENDMAEKLLR 564



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + ++I  L  S R     Q+ D M        I  +NS  I+  LC+   +++A+    +
Sbjct: 403 YSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNS--ILDALCKTHQVDKAIALLTK 460

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
            +    +P +  Y+ +I G  + GK  +A     ++     +     Y  +IQ +    +
Sbjct: 461 FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGL 520

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           ++E    L  M+ +GC PD  TY ++I       L K+ E      L + M  R 
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIII-----LSLFKKDENDMAEKLLREMIARG 570


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 37/274 (13%)

Query: 125 VFDMWKNIEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           VFD   ++   R I  +N+   +  +C+ G ME A +   +ME   +KP++  Y++++ G
Sbjct: 116 VFDEMIHLGSGRDIYTYNT--FVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDG 173

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +SK+ K++EAL    +MK + +      Y+ L+  Y K   YDEI    + M+  G   D
Sbjct: 174 FSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKD 233

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            +TYN LI  +   G L  +    + M  + +     T   ++D Y   GM    + F  
Sbjct: 234 TVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGM--HGDAFNV 291

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            L    + LK D+V           +FS   D        + +  LV C           
Sbjct: 292 YLDFKESGLKADVV-----------LFSSFID-------TLAKNGLVECAL--------- 324

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
                S++ EM    ++ NV T N I+ A+ K K
Sbjct: 325 -----SLLDEMIKMGIKPNVVTYNTIIDAFGKSK 353



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 35/288 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLN 198
           F    +I      GL  EA+   + M+G  L+P+   YN++I    K G      L +  
Sbjct: 24  FAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFR 83

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +M +  L P   T++ L+ A  +    ++       M   G   D  TYN  +      G
Sbjct: 84  QMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 143

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            ++        M    +     T   ++D +      D+  K  +++ +    L      
Sbjct: 144 NMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYN 203

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
            L  +Y+K   +       D++A                           +V  +ME+  
Sbjct: 204 TLLAIYVKTGKY-------DEIA---------------------------TVCEDMENLG 229

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +  +  T N ++  Y K      +  L+ ++  + V P ++T   L D
Sbjct: 230 IEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLID 277



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 37/152 (24%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G  +E     ++ME   ++     YNS+I+GY K G+ +     + +M+   
Sbjct: 205 LLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-----------------------IDMCLK-------- 233
           ++P   TY  LI  Y K  M+ +                       ID   K        
Sbjct: 265 VAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECAL 324

Query: 234 -----MMKLDGCSPDHITYNLLIQEFACAGLL 260
                M+K+ G  P+ +TYN +I  F  + +L
Sbjct: 325 SLLDEMIKM-GIKPNVVTYNTIIDAFGKSKIL 355



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G+  +A   + + +   LK  + +++S I   +K G    AL  L+EM +M 
Sbjct: 275 LIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMG 334

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEID 229
           + P   TY+ +I A+GK K+  E D
Sbjct: 335 IKPNVVTYNTIIDAFGKSKILTEED 359


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            K+I  LCE   +E+A   FQEM+   + P +  Y  +I  + K+G   +A  + +EM+ 
Sbjct: 459 SKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMES 518

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           +  SP   TY  L+ AY K K   +       M   GC+P+ ITY+ L+     AG  ++
Sbjct: 519 VGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQK 578

Query: 263 MEGTYKSML 271
               Y  M+
Sbjct: 579 ACEVYAKMI 587



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A++   +M   +  P++  Y ++I G  +IG+  +AL  L+ M++   +P   TY  
Sbjct: 697 LDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTS 756

Query: 215 LIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLL 260
           LI   GK     ++DM L++   M   GC+P+++TY +LI     AGLL
Sbjct: 757 LIDGLGKS---GKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLL 802



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N+      LC  G  ++A +  + M      P    Y+ +I    +  K  +A L 
Sbjct: 418 LNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLL 477

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK + + P   TY  LI ++ K  + ++       M+  GCSP  +TY  L+  +  
Sbjct: 478 FQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLK 537

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
              + +    +  M+       + T  A++D     G   K  + Y +++ +   +  D 
Sbjct: 538 TKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDF 597



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 136/394 (34%), Gaps = 37/394 (9%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  +++     ++I  L E  L +EA+     M   +  P++  Y +++ G+ K  +   
Sbjct: 268 EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGW 327

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI- 251
               ++ M     +P    ++ L+ +Y   + Y      L  M   GC P ++ YN+ I 
Sbjct: 328 CKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIG 387

Query: 252 -----QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                +E     LL   E  Y+ ML     L               G  DK  +  K ++
Sbjct: 388 SICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMM 447

Query: 307 N----SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                  T     ++  L E       F    ++       +G    V+   +L  +   
Sbjct: 448 RKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEM-----KSVGVIPDVYTYTILIDS--F 500

Query: 363 SHRGIDSVVR----EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
              G+    R    EMES     +V T   +L AYLK K       +   +      P+ 
Sbjct: 501 CKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNT 560

Query: 419 VTIGILYDARRIGFDGTGALEMW-KRIG--------FLFKTVEINTDPLVLAVYG----- 464
           +T   L D      +   A E++ K IG        F F+    ++    +  YG     
Sbjct: 561 ITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDG 620

Query: 465 --KGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             K H +   +E+   +     E     Y  LID
Sbjct: 621 LCKAHKVVDAQELLDVMSSNGCEPNHIIYDALID 654



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 56/221 (25%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ GL+E+A   F EME     PS+  Y +++H Y K  +  +A    + M +  
Sbjct: 496 LIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 205 LSPQSDTY----DGLIQA----------------------------------------YG 220
            +P + TY    DGL +A                                        YG
Sbjct: 556 CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYG 615

Query: 221 K--------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
                    +K+ D  ++ L +M  +GC P+HI Y+ LI  F   G L   +  +  M +
Sbjct: 616 ALIDGLCKAHKVVDAQEL-LDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRM-S 673

Query: 273 KRMHLRSS-TMVAILDAYMNFGMLDKMEKFYKRLLNSR-TP 311
           K  +L +  T  +++DA      LD   K   ++L S  TP
Sbjct: 674 KCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTP 714



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G ++ A   F  M      P++  Y S+I    K  + + A+  L++M E +
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESS 711

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  +I    +     +    L MM+  GC+P+ +TY  LI     +G +    
Sbjct: 712 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSL 771

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             +  M+T+       T   +++     G+LD+       +  +  P
Sbjct: 772 QLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWP 818



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + +A      M     +P+  IY+++I G+ K+GK + A      M +  
Sbjct: 617 LIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCG 676

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA----CAGLL 260
             P   TY  LI A  K +  D     L  M    C+P+ +TY  +I        C   L
Sbjct: 677 YLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKAL 736

Query: 261 KRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           K +     SM+ KR  +    T  +++D     G +D   + + +++ 
Sbjct: 737 KLL-----SMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMIT 779


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+   + Q   ++  + KSR++    N  +I+ +L ++ LM +AV  ++ M  F +KP++
Sbjct: 175 SKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTI 234

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+++  Y K GK  + L  L+EM+    +P   TY+ LI    K   +++    +  
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG- 293
           M   G      TYN LI  +   G+L       + M+ K      +T  + +      G 
Sbjct: 295 MLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 294 MLDKMEKFYKRLLNSRTP 311
           M D M++    L N+  P
Sbjct: 355 MSDAMQQLSDMLANNLLP 372



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 64/142 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II    E G + +    F EM    L PS+  Y  +IHG++  G+   A ++ +EM+E  
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG 614

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI    K +  D+       M   G  P+  +Y +LI E    G  +   
Sbjct: 615 ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEAL 674

Query: 265 GTYKSMLTKRMHLRSSTMVAIL 286
             YK ML + +   S T  A+L
Sbjct: 675 SLYKQMLDRGVQPDSCTHSALL 696



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 38/291 (13%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G M +A++   +M    L P +  YN++I+GY ++G   +A L  +E++ + L P 
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 408

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ L+    +    +        M  +G +PD +TY +L+      G L   +  + 
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            ML + + L S      +   +  G   +     + +L    P   DL+       I N 
Sbjct: 469 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFP--PDLI-------IYNV 519

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
           +   L  LG+                 L  A  L        +++M S  V  +  T   
Sbjct: 520 VVDGLCKLGN-----------------LEEASEL--------LQKMVSDGVIPDYVTYTS 554

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           I+ A+L+    +  R +  E+ ++ + P +VT  +L      G  G G LE
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH----GHAGKGRLE 601



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G +E A   F EM+   + P++  YNS+I+G  K+ + ++A  F  EM E  + P   +
Sbjct: 597 KGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYS 656

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LI        + E     K M   G  PD  T++ L+++      L+ + GT  +M 
Sbjct: 657 YTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGT-STMP 715

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           T ++ L S T V    A  +   + +     K  L    P K+  V
Sbjct: 716 TAKVDLLSQT-VGAATALTSVSSIAENGHITKEQLRQNIPTKKQFV 760



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G +EEA    Q+M    + P    Y SIIH + + G+  +      EM    
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY  LI  +      +   +    M+  G  P+ ITYN LI    C   ++RM+
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL-CK--VRRMD 636

Query: 265 GTYK---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             Y     M+ K +     +   +++   N G   +    YK++L+
Sbjct: 637 QAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLD 682



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F EM    L+     Y + I G  K+G  + A     EM      P  
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y+ ++    K    +E    L+ M  DG  PD++TY  +I      G L++    +  
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           ML+K +     T   ++  +   G L++   ++  +
Sbjct: 575 MLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 60/303 (19%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD---------------------- 210
           S++I + +I  YSK     + L   ++M +  LSP                         
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 211 -------------TYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
                        TY+ L+ +Y K  K+   +D+ L  M+  GC+P+ +TYN+LI   + 
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDL-LSEMQRRGCAPNDVTYNVLINGLSK 281

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G  ++ +G    ML   + + + T   ++  Y N GML +              L+E++
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA-----------LSLQEEM 330

Query: 317 VRKLAEVYIKNY------------MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           V K A   +  Y            M   +  L D LA+ +    + +   +  +  L + 
Sbjct: 331 VLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNL 390

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                +  E+ S  +   + T N +L    +  + +  + L  E+    + PDIVT  IL
Sbjct: 391 MKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 425 YDA 427
            + 
Sbjct: 451 VNG 453



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 38/229 (16%)

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           S  + Q+ DM  N     +  +N+  +I   C  G + +A   F E+    L P++  YN
Sbjct: 356 SDAMQQLSDMLANNLLPDVVSYNT--LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA---YGKYKMYDEI--DMCLK 233
           +++ G  + G+   A     EM    ++P   TY  L+      G   M  E   +M  +
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473

Query: 234 MMKLD------------------------------GCSPDHITYNLLIQEFACAGLLKRM 263
            ++LD                              G  PD I YN+++      G L+  
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEA 533

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSRTP 311
               + M++  +     T  +I+ A++  G L K  E FY+ L    TP
Sbjct: 534 SELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTP 582


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C EG M  AVR F+ M     +P++  YN+I+ G+   GK  +A+  L++M+E  
Sbjct: 306 VVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECG 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI+              L++M+ +G + D  TYN+LI      G +    
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +  +  + +   S T   +++     G  D    F + ++++
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISA 469



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 6/176 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +++    +I  LC+ G ++EA   F  +E   ++P+   +N++I+G  K GKF+ A  FL
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFL 463

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M     +P + TY   I+   K K   E    +  M      P  + Y ++I      
Sbjct: 464 ENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNE 523

Query: 258 ---GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
              GL  R+ G    M+++       T    + AY N G LD+ E     +   RT
Sbjct: 524 RNYGLATRIWG---QMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRT 576



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 78  NALIQRLNKKVSCP-----LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI 132
           NALI+ L ++         L ++   G W  D F      +    R++Q+    D++  +
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSG-WRPDAF-TFNSLILGYCRTQQLEVAHDLFCKM 190

Query: 133 EKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
                ++   +   +I   CE G ++EA+  F+EM     +P +  + +++ G    G+ 
Sbjct: 191 PFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT----QPDMYTHAALVKGLCDAGRG 246

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            E L  L +MKE+   P +  Y  L+  + + +  +E +  L  M   G  P  +T  ++
Sbjct: 247 EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIV 306

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-------MLDKMEK 300
           +  +   G +      ++SM  K       T  AI+  + N G       +LD+M +
Sbjct: 307 VNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRE 363



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G +  A R  + MEG  L      YN +I    K GK +EA    + ++   + P S
Sbjct: 381 CIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNS 440

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            T++ +I    K   +D     L+ M   G +PD  TY+  I+
Sbjct: 441 VTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIE 483



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 15/259 (5%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+   YN++I    +      A  +L+ M      P + T++ LI  Y + +  +     
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              M   G S D ++Y  LI+ F  AG +      ++ M    M+  ++ +  + DA   
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRG 246

Query: 292 ---FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
                ML KM++   R      P        L +++ +       + + +++        
Sbjct: 247 EEGLCMLQKMKELGWR------PTTRAYA-ALVDLWCREQKAEEAEKILNEMFDSGLMPC 299

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRW---NVTTANIILLAYLKMKDFKHLRVL 405
           +V C  +++  C      +   VR  ES + +    NV T N I+  +           L
Sbjct: 300 VVTCTIVVNAYC--REGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL 357

Query: 406 LSELPTRHVKPDIVTIGIL 424
           L ++    V+PD+VT  +L
Sbjct: 358 LDQMRECGVEPDVVTYNLL 376


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 4/215 (1%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           + IE +R + FN       LC  G +E A R F++M+   + P +  YN++I+GY ++ K
Sbjct: 144 EGIEPTR-HTFNVMIWGFFLC--GKVETANRFFEDMKXREISPDVITYNTMINGYYRVKK 200

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA  +  EMK  N+ P   TY  LI+ Y      D+    L+ MK  G  P+ ITY+ 
Sbjct: 201 IEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYST 260

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           L+     A  +    G  K M+ K +  + +S  + ++      G LD      K ++  
Sbjct: 261 LLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRL 320

Query: 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
             P +      L E Y K   + +   L D L  +
Sbjct: 321 SVPTEAGHYGVLIENYCKAGDYEKAIKLLDKLIEK 355



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQEM 165
           V   L  S +S    Q F  W  +E+S + E N +   KII +L     +  A     +M
Sbjct: 15  VYNVLHGSKKSEHALQFF-RW--VERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 71

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               L+   +++  +I  Y K G   E++    +M+E+ +     +YD L +   +   Y
Sbjct: 72  PKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRY 131

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
                    M  +G  P   T+N++I  F   G ++     ++ M  + +     T   +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXREISPDVITYNTM 191

Query: 286 LDAYMNFGMLDKMEKFY 302
           ++ Y     +++ EK++
Sbjct: 192 INGYYRVKKIEEAEKYF 208


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC+EG   E    F++M     K ++ IY ++I   +K G   EA+L    MK+  
Sbjct: 278 VIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEG 337

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  ++    K    DE    L+  +++G + + + Y+ LI     AG +   E
Sbjct: 338 LEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAE 397

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++ M+ K     S    A++DA    G  D+   F+KR+
Sbjct: 398 KLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRM 438



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 24/223 (10%)

Query: 112 FLKNSSRSRQIPQVFD----------MWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAV 159
           FL N S +  + + F           +W+ ++++ +    F    ++  L     +E A 
Sbjct: 128 FLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAE 187

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA- 218
           R  + ME   + P +  YN++I GY ++GK  +A     +M+  N++P   TY  LIQA 
Sbjct: 188 RVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQAC 247

Query: 219 YGKYKMYDEIDMCLKM---MKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           Y +     + D+CL +   M  +G   P H  Y+L+I      G        ++ M+ K 
Sbjct: 248 YAE----GDFDLCLSLYHEMDENGLEIPPH-AYSLVIGGLCKEGKCVEGYAVFEKMIQKG 302

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             +  +   A++D+    G + +    ++R+   +  L+ D+V
Sbjct: 303 CKVNVAIYTALIDSNAKCGNMGEAMLLFERM--KKEGLEPDVV 343



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 145 IIGMLCEEGLMEEAVR--AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           ++  +C+ G ++EA+    F  + G A+   L  Y+S+I G  K G+ +EA     EM +
Sbjct: 348 VVNCMCKSGRLDEAMEYLEFCRVNGVAVNAML--YSSLIDGLGKAGRVHEAEKLFEEMVK 405

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
               P S  Y+ LI A  K    DE     K M+ +GC     TY ++I 
Sbjct: 406 KGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMIN 455



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 62/151 (41%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I +L   G ++     F +  G     ++   NS+I  +  +G   E L     MKE  +
Sbjct: 104 IDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGV 163

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY+ L+         +  +  L++M+     PD +TYN +I+ +   G  ++   
Sbjct: 164 EPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFE 223

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
            ++ M  + +     T + ++ A    G  D
Sbjct: 224 KFRDMELRNVAPDKITYMTLIQACYAEGDFD 254



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 9/236 (3%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           +K   +  +  + F+ ++++E   +  ++     +I     EG  +  +  + EM+   L
Sbjct: 209 IKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGL 268

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +     Y+ +I G  K GK  E      +M +         Y  LI +  K     E  +
Sbjct: 269 EIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAML 328

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             + MK +G  PD +TY +++     +G L       +      + + +    +++D   
Sbjct: 329 LFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLG 388

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKE-------DLVRKLAEVYIKNYMFSRLDDLGDD 339
             G + + EK ++ ++    P          D + K  +       F R++D G D
Sbjct: 389 KAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCD 444



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 51/126 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I  L + G + EA + F+EM      P    YN++I   +K GK +EAL F
Sbjct: 375 VNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAF 434

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
              M++        TY  +I    +    +E      MM   G +P    +  L      
Sbjct: 435 FKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCL 494

Query: 257 AGLLKR 262
           +G + R
Sbjct: 495 SGKVAR 500


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 131/316 (41%), Gaps = 31/316 (9%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C EG +  A   F +M    + P L  YNS+I G SK+G+  E+  + 
Sbjct: 361 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYF 420

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M+E  L P   TY GLI  Y K    +  +  ++ M   G  P+ + Y  L++ +  +
Sbjct: 421 AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 480

Query: 258 GLLKRMEGTYKSMLTKRMHLRS---STMVAILDAYMN----FGMLDKMEKFYKRLLNSRT 310
             ++++  T+KSML + + L +     ++  L +  N    F +L ++EK      N   
Sbjct: 481 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK------NGSV 534

Query: 311 P---LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           P   +   L+  L +   +   F  LD++     S+ G    + C   L     L   G 
Sbjct: 535 PDVHVYSSLISGLCKTADREKAFGILDEM-----SKKGVDPNIVCYNALIDG--LCKSGD 587

Query: 368 DSVVREMESA----KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
            S  R + ++     +  N  T   ++    K+ D  +   L +E+    + PD      
Sbjct: 588 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPD----AF 643

Query: 424 LYDARRIGFDGTGALE 439
           +Y     G    G LE
Sbjct: 644 VYSVLTTGCSSAGDLE 659



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RS  + + F   K++E   +  + F    +I  LC+     EA     EM    LKP++ 
Sbjct: 164 RSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 223

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +Y ++I G+ + G  +EA   + EM    + P   TYD L++   K    D   + LK M
Sbjct: 224 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 283

Query: 236 KLDGCSPDHITYNLLIQ 252
             D   PD ITYNL+I+
Sbjct: 284 VRDSHRPDTITYNLIIE 300



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 11/310 (3%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F +   +E + I  N +    +I  LC+ G  E+A    +EM    LKP+  +Y  +I 
Sbjct: 311 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 370

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY + G  + A    ++M ++N+ P    Y+ LI    K    +E       M+  G  P
Sbjct: 371 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 430

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           +  TY+ LI  +   G L+  E   + ML   +       + +L++Y     ++K+   +
Sbjct: 431 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 490

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSH 358
           K +L+    L      ++  + I N   S   +    + S I +   V  +     L+S 
Sbjct: 491 KSMLDQGVMLD----NRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISG 546

Query: 359 ACLLSHR-GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C  + R     ++ EM    V  N+   N ++    K  D  + R + + +  + + P+
Sbjct: 547 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606

Query: 418 IVTIGILYDA 427
            VT   L D 
Sbjct: 607 CVTYTSLIDG 616



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQK-------------------- 144
            W V  F+  +  S   P V+     IE   ++ EF++ K                    
Sbjct: 101 LWKVREFMVGAGIS---PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNV 157

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +EEA    ++ME + L P    Y ++I+G  K  + NEA   L+EM    
Sbjct: 158 LIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE 217

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P    Y  LI  + +    DE    +K M   G  P+ ITY+ L++     GL K  +
Sbjct: 218 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR-----GLCKMGQ 272

Query: 265 GTYKSMLTKRM 275
               S+L K+M
Sbjct: 273 MDRASLLLKQM 283



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A+I  L  S RS +   + D     E  + N      +I     EG  +EA +  +EM
Sbjct: 190 YGALINGLCKSRRSNEAKALLDEMSCAEL-KPNVVVYANLIDGFMREGNADEAFKMIKEM 248

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P+   Y++++ G  K+G+ + A L L +M   +  P + TY+ +I+ + ++   
Sbjct: 249 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNK 308

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            +    L  M+  G SP+  TY+++I     +G  ++     + M TK +   +     +
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368

Query: 286 LDAYMNFG-------MLDKMEK 300
           +  Y   G       + DKM K
Sbjct: 369 ISGYCREGNVSLACEIFDKMTK 390



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 23/270 (8%)

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           VR F  M G  + P +  Y+++I  Y K+ +F+ A   L EM+E      + TY+ LI  
Sbjct: 104 VREF--MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 161

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--- 275
             +    +E     K M+  G  PD  TY  LI      GL K         L   M   
Sbjct: 162 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALIN-----GLCKSRRSNEAKALLDEMSCA 216

Query: 276 HLRSSTMV--AILDAYMNFGMLDKMEKFYKRLLNSRT-PLK---EDLVRKLAEVYIKNYM 329
            L+ + +V   ++D +M  G  D+  K  K ++ +   P K   ++LVR L     K   
Sbjct: 217 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLC----KMGQ 272

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTAN 387
             R   L   +     R + +    L+       H   D+  ++ EME+A +  NV T +
Sbjct: 273 MDRASLLLKQMVRDSHRPDTI-TYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYS 331

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
           I++    +  + +    LL E+ T+ +KP+
Sbjct: 332 IMIHGLCQSGEPEKASDLLEEMTTKGLKPN 361


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 148/343 (43%), Gaps = 36/343 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++  LC +GL+  A++   EM      P ++ YN +I+G  K+G  ++A
Sbjct: 357 KPDIVVYNS--LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 414

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + +N+       P   T++ LI  Y K    D     ++ M   G +PD ITYN ++  
Sbjct: 415 TVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 474

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPL 312
              AG +  +  T++ M+ K  H    T   +++   NF   +KME+  K ++  S+  L
Sbjct: 475 LCKAGKVNEVNETFQEMILKGCHPNPITYNILIE---NFCRSNKMEEASKVIVKMSQEGL 531

Query: 313 KEDLV--RKLAEVYIKN-------YMFSRLDDLG-----DDLASRIGRTELVWCLRLLSH 358
             D V    L   + +N        +F +L++ G     D   + IG           + 
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG-----------AF 580

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           +  L+    + +  EM S   R +  T  +++    K  +     + L E+  +   P +
Sbjct: 581 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 640

Query: 419 VTIGILYDARRIG---FDGTGALEMWKRIGFLFKTVE--INTD 456
            T G + ++  +    F   G + +  +IG + + V+  +N D
Sbjct: 641 STFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNAD 683



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN F     I  LCE G + EAVR    M  +A+ P +  YN++I G  K     EA+ +
Sbjct: 219 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHY 277

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M      P   TY+ +I  Y K  M  E    LK     G  PD +TY  LI     
Sbjct: 278 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 337

Query: 257 AGLLKR 262
            G ++R
Sbjct: 338 EGDVER 343



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 44/318 (13%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  LC+ G + EA     ++    +  +L  YN  I G  + G+  EA+  ++ M+  
Sbjct: 191 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY 250

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P   TY+ LI+   K  M  E    L+ M   GC PD  TYN +I  +    +++  
Sbjct: 251 AV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 309

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               K  + K       T  ++++     G +++  + +         +K D+V      
Sbjct: 310 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEA--QAKGIKPDIV------ 361

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLR-LLSHACLLSHRGIDSVVREMESAKVRWN 382
            + N +   L                  CL+ L+ HA          V+ EM       +
Sbjct: 362 -VYNSLVKGL------------------CLQGLILHAL--------QVMNEMAEEGCHPD 394

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEM 440
           + T NI++    KM +     V++++   +   PD+ T   L D   +R+  D   AL++
Sbjct: 395 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLD--SALQL 452

Query: 441 WKRI---GFLFKTVEINT 455
            +R+   G    T+  N+
Sbjct: 453 VERMWEYGIAPDTITYNS 470


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 36/253 (14%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I  +C+ G +E A++   +ME   +KP++  Y+++I GYSK+ K++EAL    +MK + +
Sbjct: 346 IDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGI 405

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
                 Y+ ++  Y K   Y EI +    M+  G   D +TYN LI  +   G L  +  
Sbjct: 406 QLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSF 465

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
             + M  + +     T   ++D Y   GM    + F   L    + LK D+V        
Sbjct: 466 LVQDMRRRGVAPSVLTYSTLIDIYSKAGM--HGDAFNVYLDFKESGLKPDVV-------- 515

Query: 326 KNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
              +FS   D        + +  LV W L LL+               +M    ++ NV 
Sbjct: 516 ---LFSSFIDT-------LAKNGLVEWALSLLN---------------DMTEMGIKPNVV 550

Query: 385 TANIILLAYLKMK 397
           T N I+ A+ K K
Sbjct: 551 TYNTIIDAFGKSK 563



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 102/288 (35%), Gaps = 35/288 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLN 198
           F +  +I      GL+ EA+   + M+G  L+P+   YN++I    K G      L +  
Sbjct: 234 FANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFR 293

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +M    L P   T++ L+ A  +    ++       M   G   D  TYN  I      G
Sbjct: 294 QMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCG 353

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
            ++        M  K +     T   ++D Y      D+  K Y+++ +    L      
Sbjct: 354 NIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYN 413

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
            +  +Y+K              A + G   +                    V  EME + 
Sbjct: 414 TVLAIYVK--------------AGKYGEIAI--------------------VCDEMEDSG 439

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +  +  T N ++  Y K      +  L+ ++  R V P ++T   L D
Sbjct: 440 IEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLID 487



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 60/145 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G   E      EME   ++     YNS+I+GY K G+ +     + +M+   
Sbjct: 415 VLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY  LI  Y K  M+ +        K  G  PD + ++  I   A  GL++   
Sbjct: 475 VAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWAL 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
                M    +     T   I+DA+
Sbjct: 535 SLLNDMTEMGIKPNVVTYNTIIDAF 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G+  +A   + + +   LKP + +++S I   +K G    AL  LN+M EM 
Sbjct: 485 LIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMG 544

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEID 229
           + P   TY+ +I A+GK K+  E D
Sbjct: 545 IKPNVVTYNTIIDAFGKSKVLSEED 569



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
             IEK  +  +NS  +I    ++G ++      Q+M    + PS+  Y+++I  YSK G 
Sbjct: 438 SGIEKDTVT-YNS--LINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGM 494

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             +A     + KE  L P    +   I    K  + +     L  M   G  P+ +TYN 
Sbjct: 495 HGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNT 554

Query: 250 LIQEFA 255
           +I  F 
Sbjct: 555 IIDAFG 560


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA++ F+ M+   + P    YNS+I  Y ++G+ NEA+    ++K +N    + TY  +
Sbjct: 195 EEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAI 254

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
              Y +   Y  I   ++ M+  G SP+ +  N L+   + AG + + +  +  M T  +
Sbjct: 255 ANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGV 314

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                T+  +++ Y   G  D+  + Y+ L
Sbjct: 315 SPTPVTLSILVEMYTRVGAYDQAFEVYETL 344



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I  +    G  +  ++  QEM      P+  I N+++   SK GK N+A    NEM+   
Sbjct: 254 IANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSG 313

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   T   L++ Y +   YD+     + +K +G   D   YN L++     G +++ E
Sbjct: 314 VSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAE 373

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSR--TPLKEDLVR-- 318
              K M     +    T    ++ Y   GM+D   + + ++  LN +  TPL   ++R  
Sbjct: 374 DILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRAC 433

Query: 319 KLA-EVYIKNYMFSRLDDLG 337
           KLA E+   + +F  + + G
Sbjct: 434 KLAGEIEQASKIFDEMMESG 453



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 84/192 (43%), Gaps = 2/192 (1%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R RQ  +    ++ ++   I  +E     +I M    G + EAV  +++++    K  
Sbjct: 188 AKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD 247

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y +I + Y++ G +   +  + EM++   SP +   + L+    K    ++      
Sbjct: 248 TVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFN 307

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G SP  +T ++L++ +   G   +    Y+++ T+      +   +++ A +  G
Sbjct: 308 EMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 294 MLDKMEKFYKRL 305
            +++ E   K +
Sbjct: 368 RVEQAEDILKEM 379



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)

Query: 124 QVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           Q F++++ ++    K  +  +NS  ++    E G +E+A    +EM+     P    Y +
Sbjct: 336 QAFEVYETLKTEGWKCDVAVYNS--LMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRT 393

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK----MM 235
            ++ Y+  G  + A    +++  +N  P +  +  +I+A    K+  EI+   K    MM
Sbjct: 394 AMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRA---CKLAGEIEQASKIFDEMM 450

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +   CSPD     +L+   +C  + K                     +AILD    F   
Sbjct: 451 ESGCCSPDERVSGMLL---SCMAMAK----------------NDDERLAILDCLDKFNA- 490

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
             + +    ++    P   D V ++ E +I +Y
Sbjct: 491 -PLHELMSAIVRKEEPRSRDEVAEMVEKFISDY 522


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 132 IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IEK  R N  +   +I + C EG M EA R F+EM G   +PSL  YN ++ GY K G  
Sbjct: 304 IEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSI 363

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITY 247
            EA  F NEM++  L P   +Y  L+     + +  ++D+ L++   MK  G  P+ + Y
Sbjct: 364 REAERFKNEMEKKGLVPDIYSYAALVHG---HCVNGKVDVALRLFEEMKQRGSKPNLVAY 420

Query: 248 NLLIQEFACAGLLKRMEGTYKSML 271
             LI   A  G  +     Y +ML
Sbjct: 421 TALISGLAKEGRSEEAFQLYDNML 444



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/256 (19%), Positives = 104/256 (40%), Gaps = 37/256 (14%)

Query: 82  QRLNKKVSCPLQILQHDG-DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF 140
           ++ + +V+  L++++++G + T   +  ++  L  +    ++  VF+  K+   S    F
Sbjct: 115 EKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYF 174

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            S  +I   C  G +  A   F E  G  ++P+   Y ++I+G+ KIG+   A + + +M
Sbjct: 175 YSS-VINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDM 233

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYD---EIDMCLKMMKLD------------------- 238
           +   +      ++ +I  Y +  M D   EI M ++ M ++                   
Sbjct: 234 QVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRM 293

Query: 239 -------------GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
                        G  P+H++Y  LI      G +      ++ M          T   +
Sbjct: 294 DEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVM 353

Query: 286 LDAYMNFGMLDKMEKF 301
           +D Y+  G + + E+F
Sbjct: 354 MDGYIKKGSIREAERF 369



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 140/355 (39%), Gaps = 48/355 (13%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++ GY K G+   A   L+EM    +   +  Y+ L+ AY + K  D +   LK+M+ +G
Sbjct: 73  VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEG 132

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P   TY +L+   + A  + ++E  ++ M +K +        ++++AY   G + +  
Sbjct: 133 IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRAS 192

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELV-------W 351
           + +   + +     E     L   + K       + L  D+  R +G  ++V       +
Sbjct: 193 EVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGY 252

Query: 352 CLRLLSHACL-----LSHRGID-----------------------SVVREMESAKVRWNV 383
           C + +    L     +   GI+                       +++R M    VR N 
Sbjct: 253 CRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNH 312

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            +   ++  +    D    R L  E+     +P +VT  ++ D    G+   G++   +R
Sbjct: 313 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMD----GYIKKGSIREAER 368

Query: 444 IGFLFKTVEINTDPLVLAVYGKGHFLR-YC--EEVYSSLEPYSREKKRWTYQNLI 495
               FK  E+    LV  +Y     +  +C   +V  +L  +   K+R +  NL+
Sbjct: 369 ----FKN-EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV 418



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 110/277 (39%), Gaps = 33/277 (11%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GK 221
           ME   ++P++  Y  ++ G S      +      EMK  NLS     Y  +I AY   G 
Sbjct: 128 MENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN 187

Query: 222 YKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
            +   E+ D C+     +G  P+  TY  LI  F   G ++  E     M  + + +   
Sbjct: 188 VRRASEVFDECVG----NGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQI 243

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM------FSRLD 334
               ++D Y    M+DK  +   +++  +  ++ D       VY  N +       +R+D
Sbjct: 244 VFNTMIDGYCRKNMVDKALEI--KMIMEKMGIELD-------VYTYNTLACGLRRANRMD 294

Query: 335 DLGDDLASRIG---RTELVWCLRLLSHAC----LLSHRGIDSVVREMESAKVRWNVTTAN 387
           +  + L   I    R   V    L+S  C    ++  R    + REM       ++ T N
Sbjct: 295 EAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEAR---RLFREMAGNGAEPSLVTYN 351

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +++  Y+K    +      +E+  + + PDI +   L
Sbjct: 352 VMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAAL 388



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++ A+R F+EM+    KP+L  Y ++I G +K G+  EA    + M    L+P  
Sbjct: 393 CVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDD 452

Query: 210 DTYDGLIQA 218
             Y  L+ +
Sbjct: 453 ALYSALVGS 461


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 111/283 (39%), Gaps = 34/283 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC EG + EA + F  ++   + P+  IYN+++ GY K  +  +A L   EM+   
Sbjct: 323 ILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTG 382

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   T++ L+  + KY   ++ D  LK + + G   D   Y++++     AG L    
Sbjct: 383 VSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAM 442

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + +L K + L      +++ AY   G+ DK  + Y+ ++             L    
Sbjct: 443 KLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLL--- 499

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
                              +G     W    L  A +L +R        M       N  
Sbjct: 500 -------------------MGLCRKGW----LQEARILLYR--------MLEKGFPINKV 528

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              ++L  Y KM + +  + L  E+  R + PD V    L D 
Sbjct: 529 AYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDG 571



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    II   C  G M+ A+  F +M+   L P +  +N +I GY K      A   +
Sbjct: 631 DTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIV 690

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N+M    L P   TY+  +  Y + +  ++  + L  +   G  PD +TYN ++    C+
Sbjct: 691 NKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGI-CS 749

Query: 258 GLLKR 262
            +L R
Sbjct: 750 DILDR 754



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 128 MWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +WK +++  I  +      +I  L + G +EEA   F EM      P+   YNS+I G  
Sbjct: 549 LWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLC 608

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDH 244
             G+  EAL    EM++  L   + T++ +I  + +  +M   I+  L M ++ G  PD 
Sbjct: 609 DCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRI-GLLPDI 667

Query: 245 ITYNLLIQEFACA 257
            T+N+LI  +  A
Sbjct: 668 FTFNILIGGYCKA 680



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 126/312 (40%), Gaps = 36/312 (11%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G ++EA++  QE+    L  S+  +NS+I  YS+ G  ++A      M    
Sbjct: 428 MVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCG 487

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P S T + L+    +     E  + L  M   G   + + Y +L+  +     L+  +
Sbjct: 488 FTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQ 547

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL------------------- 305
             +K M  + ++  +    A++D     G +++  + +  +                   
Sbjct: 548 FLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGL 607

Query: 306 -----LNSRTPLKEDLVRK--LAEVYIKNYM---FSRLDDLGDDLAS-----RIGRTELV 350
                +     L++++ +K  L++ +  N +   F R   +   + +     RIG    +
Sbjct: 608 CDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDI 667

Query: 351 WCLRLL--SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           +   +L   +       G   +V +M S  +  ++TT N  +  Y +M+      ++L +
Sbjct: 668 FTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQ 727

Query: 409 LPTRHVKPDIVT 420
           L +  + PD VT
Sbjct: 728 LISAGIVPDTVT 739



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRA 161
           F A+I  L  +    +  +VF     +E S I    N F    +I  LC+ G + EA++ 
Sbjct: 565 FTALIDGLSKAGNVEEAYEVF-----LEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKL 619

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            +EM    L      +N II G+ + G+   A+    +M+ + L P   T++ LI  Y K
Sbjct: 620 EKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCK 679

Query: 222 -YKMYDEIDMCLKMMKLDGCSPDHITYN 248
            + M    ++  KM    G  PD  TYN
Sbjct: 680 AFDMVGAGEIVNKMYSC-GLDPDITTYN 706



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W + R    + R+ +I     MW+N  + +S  +  N+  ++      G+  EA+   + 
Sbjct: 149 WLIARV--GTGRTNKIVDF--MWRNHAMYESDFSVLNT--LLRGFLNVGMGFEALEVLRM 202

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M G  ++P L     ++    +IG +        +M      P + T++ +I  + +   
Sbjct: 203 MRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHR 262

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               +  L +M    CSPD +T+N+LI      G
Sbjct: 263 VVVGESLLHLMPKFMCSPDVVTFNILINACCIGG 296


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 9/285 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+EG ++EA R  +E   + L P+L  Y S+IHG+   G+   A   L EM E  
Sbjct: 405 LISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERG 464

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   T+  LI          E  +  + M      PD   YN+LI       +L    
Sbjct: 465 HTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAAR 524

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + ML + +H        ++D ++    LD+  K ++ +   +  +  D+V   A   
Sbjct: 525 NLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFM--EQKGIHPDVVGYNA--M 580

Query: 325 IKNY-MFSRLDDLGDDLAS--RIGRT--ELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           IK Y  F  +++  + +++  ++GR   E  +   +  +A   +  G  S++ +M   + 
Sbjct: 581 IKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRC 640

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + NV   + ++  Y K+ D      L   + ++ + P+++T  IL
Sbjct: 641 QPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTIL 685



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 152/396 (38%), Gaps = 37/396 (9%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E+S  +++++  ++  LC EGL+E+ ++  +   G    P+   YN +I GY + G    
Sbjct: 253 EESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGR 312

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +L L EM+   L P   TY  L+   G+    ++I   L  M+     P+   YN +I 
Sbjct: 313 GILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVID 372

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL------- 305
                    +     K M        + T   ++      G + + E+  +         
Sbjct: 373 ALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNP 432

Query: 306 -LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
            L+S T L      +   +   N +   ++          G T  V     L H  +++ 
Sbjct: 433 NLSSYTSLIHGFCVRGEVIVASNLLVEMMER---------GHTPDVVTFGALIHGLVVAG 483

Query: 365 RGIDS-VVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           +  ++ +VRE M + ++  +    N+++    K K     R L+ E+  ++V PD     
Sbjct: 484 QVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYT 543

Query: 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCE--------E 474
            L D    GF    +L+  ++I    +   I+ D +      KG    YC+        E
Sbjct: 544 TLID----GFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKG----YCQFGMMNEAVE 595

Query: 475 VYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510
             S++    R    +TY  LI    K    N+ G  
Sbjct: 596 CMSTMRKVGRIPDEFTYTTLIGGYAKQG--NISGAL 629



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 133 EKSRINEFNSQK-----------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           E  +I EF  QK           +I   C+ G+M EAV     M      P    Y ++I
Sbjct: 557 EARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLI 616

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GY+K G  + AL  L +M +    P    Y  LI  Y K    D  +     M+  G  
Sbjct: 617 GGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLF 676

Query: 242 PDHITYNLLI 251
           P+ ITY +LI
Sbjct: 677 PNVITYTILI 686


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 122/311 (39%), Gaps = 45/311 (14%)

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           E    ++I  LC  G+++EA + F+EM      PS E++N++IH   K  +  + +L   
Sbjct: 266 EEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQ 325

Query: 199 EMKEMN---LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            MK M      P  +TY+ ++    K K  DE    +  M   G SPD +TY+ L+    
Sbjct: 326 RMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC 385

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G L R     + M  + +   S T  +IL+A    G +D                   
Sbjct: 386 KLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD------------------- 426

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---R 372
                       Y  S L    + + +R    +LV    LL   C      ID  +    
Sbjct: 427 ------------YALSHL----ETMKARGSTPDLVTYNTLLDGLCKAGR--IDEAITFLA 468

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
           +M +AK   +V +  II+ A  +         +  E+  R V PD V    L D   R G
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528

Query: 432 FDGTGALEMWK 442
            +   ALE+ K
Sbjct: 529 LEDL-ALELLK 538



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 133/356 (37%), Gaps = 53/356 (14%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGML 149
            Q +Q  G    D  ++++  L+   ++ ++ +  ++   + +S  ++N      +I   
Sbjct: 61  FQQMQRRGYPPDDFTYSIV--LRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGC 118

Query: 150 CEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C+   +++A+  F+ M  G    P +  +NS++ G     + +EA +    M +    P 
Sbjct: 119 CKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y  L+    K    DE     + M    C PD + Y   +     A  +       +
Sbjct: 179 VISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCR 238

Query: 269 SMLTKRMHLRS---STMVAIL--------------DAYMNFGMLDKMEKFYKRLLNSRTP 311
            M+TK     +   ST++ IL              +     GMLD+  K ++ +++   P
Sbjct: 239 KMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHP 298

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
              +L   L     K+    RL D                         LL  R     +
Sbjct: 299 PSAELFNTLIHAVCKS---KRLPD-----------------------GVLLFQR-----M 327

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + M+      N+ T NI++    K K     + L++E+    + PD+VT   L D 
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 34/215 (15%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  D+ + + K  +  + F    I+  L + G ++ A+   + M+     P L  YN
Sbjct: 389 KLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYN 448

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI-------QAYGKYKMYDEI--- 228
           +++ G  K G+ +EA+ FL +M     +P   +Y  +I       QA G + ++ E+   
Sbjct: 449 TLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508

Query: 229 ----------------------DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
                                 D+ L+++K   C PD + + +++     AG  +     
Sbjct: 509 GVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEV 568

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
            + M        + T + ++      G +DK  + 
Sbjct: 569 VERMADAGFPADAFTYINVVRGLRKLGKVDKARQL 603



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 7/205 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  V   L++  +   I ++FD     +  + + F     +  L +    + A   FQ+M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P    Y+ ++ G  K G+ ++A   L +++E  +     TY  +I    K    
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 226 DEIDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRMEGT---YKSMLTKRMHLRSST 281
           D+     K M    GC PD +T+N L++   C+G  +RM      ++ M          +
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGL-CSG--ERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLL 306
              +LD     G LD+  + ++ ++
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMV 206


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 134/318 (42%), Gaps = 22/318 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G  +EA   F+EM+   + P +  Y+++IHG+   GK++++    +EM +  
Sbjct: 243 IIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQG 302

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+  LI    K     E    L++M   G  P+ ITYN LI  F   G L    
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAR 362

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP-------LKEDL 316
             + SM +K +     +   +++ Y     + +    Y  +L   ++P       L + L
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
            +K  +V     +F  +   G    S+I     ++   L  + CL        +  E++S
Sbjct: 423 FQK-GKVGDAKKLFGVMKTYGVSANSQIYG---IFLDGLCKNDCLFEAM---ELFNELKS 475

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
              + N+   + ++    K    +    L  +L    ++PD+VT  I+      GF   G
Sbjct: 476 YNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIH----GFCKVG 531

Query: 437 ALEMWKRIGFLFKTVEIN 454
            ++       LF+ +E N
Sbjct: 532 QVD---NANILFEKMEEN 546



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   + EA+  F E++ +  K ++E Y+ +I G  K GK   A     ++ +  L P 
Sbjct: 457 LCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPD 516

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ +I  + K    D  ++  + M+ +GC+PD I YN L+  F     L+ +     
Sbjct: 517 VVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLH 576

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            M+ K +   +++   ++D      ML K EK+ K
Sbjct: 577 KMVQKDVSPNAASCTIVVD------MLCKDEKYKK 605



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 6/168 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           +I  LC E  + EA R F  M+     P+   Y ++I G  + G  N AL    EM    
Sbjct: 167 LIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDA 226

Query: 203 ----MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
               +N  P   TY  +I    K    DE     + MK  G  PD I+Y+ LI  F CAG
Sbjct: 227 SQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAG 286

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              + +  +  M+ + +     T   ++D     G + + +K  + ++
Sbjct: 287 KWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMI 334



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 6/171 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM------EGFALKPSLEIYNSIIHGYSKIGKFN 191
           N      +I  LC+ G +  A++  +EM       G   KP +  Y+ II G  K+G+ +
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA     EMK   + P   +Y  LI  +     +D+       M   G  PD +T+++LI
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
                 G +   +   + M+ + +     T  +++D +   G L+   + +
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF 365



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 59/116 (50%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N  N   +I  LC+ G +E A   F+++    L+P +  YN +IHG+ K+G+ + A +
Sbjct: 479 KLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANI 538

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
              +M+E   +P    Y+ L+  + +    +E+   L  M     SP+  +  +++
Sbjct: 539 LFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVV 594



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 26/283 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G +  A   F  M    L+P    Y ++I+GY K  K  EA+   NEM ++ 
Sbjct: 348 LIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVG 407

Query: 205 LSPQSDTYDGLIQA-YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            SP   TY  L++  + K K+ D   +   +MK  G S +   Y + +        L   
Sbjct: 408 KSPNVTTYGTLLKGLFQKGKVGDAKKL-FGVMKTYGVSANSQIYGIFLDGLCKNDCLFEA 466

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR----- 318
              +  + +    L       ++D     G L+   + +++L  S+  L+ D+V      
Sbjct: 467 MELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKL--SQEGLQPDVVTYNIMI 524

Query: 319 ----KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-- 372
               K+ +V   N +F ++++ G          +++    LL   C      ++ V++  
Sbjct: 525 HGFCKVGQVDNANILFEKMEENG-------CTPDIIAYNTLLCGFC--EGNKLEEVIKLL 575

Query: 373 -EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT-RH 413
            +M    V  N  +  I++    K + +K    LL + P  RH
Sbjct: 576 HKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQRH 618



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 87/483 (18%), Positives = 185/483 (38%), Gaps = 41/483 (8%)

Query: 37  AKTLIRKPISCCCLSSAPSLDYHSTKHTTL------LVESYHEHQALNALIQRLNKKVSC 90
           +KTL+  P      S  P+L   ST  +T+         ++H +  L A   R       
Sbjct: 3   SKTLLPSP------SFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHH 56

Query: 91  PLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC 150
           PL +   +             F     RS  IP             I+ FN  +++G L 
Sbjct: 57  PLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPP------------ISSFN--RLLGGLA 102

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +     +    + EM    L P L   + + +    + + +EAL  +  +      P   
Sbjct: 103 KINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVV 162

Query: 211 TYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           TY  LI+    ++++ +   + L+M KL GC+P+ +TY  LI+     G +      +K 
Sbjct: 163 TYTTLIKGLCMEHRISEATRLFLRMQKL-GCTPNAVTYGTLIKGLCQTGNVNIALKLHKE 221

Query: 270 MLTKRMHLRSS------TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLA 321
           ML        +      T   I+D     G  D+ ++ ++ +      +  D++    L 
Sbjct: 222 MLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEM--KAQGMIPDVISYSTLI 279

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVR 380
             +     + +   L D++  +  + ++V    L+   C          ++  M    + 
Sbjct: 280 HGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM 440
            N+ T N ++  +  + D    R L   +P++ ++PD ++   L +     +    A+ +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 441 WKRIGFLFKTVEINT-DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVI 499
           +  +  + K+  + T   L+  ++ KG  +   ++++  ++ Y        Y   +D + 
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGK-VGDAKKLFGVMKTYGVSANSQIYGIFLDGLC 458

Query: 500 KHN 502
           K++
Sbjct: 459 KND 461


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 124/308 (40%), Gaps = 34/308 (11%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +    ++  LC++G + +A +  + +    L P+  IYN++I+GY ++     A   
Sbjct: 333 IGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSI 392

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +MK  ++ P   TY+ LI    K +M  E +  +  M+  G  P   T+N LI  +  
Sbjct: 393 FEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGR 452

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG L++       M  K +     +  +++ A+   G + +       +++        +
Sbjct: 453 AGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQV 512

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              + + YI++                 G TE  + L                 V +M+S
Sbjct: 513 YNSIIDAYIES-----------------GGTEQAFLL-----------------VEKMKS 538

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           + V  ++ T N++L    K         L+  L  + ++PD+V+   +  A     D   
Sbjct: 539 SGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDR 598

Query: 437 ALEMWKRI 444
           ALE+ + +
Sbjct: 599 ALELLQEM 606



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 125/295 (42%), Gaps = 9/295 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F+   +I  L   G   +A++ F EM    + P+   YN++I G+ K G         
Sbjct: 194 DAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLR 253

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M +    P   TY+ L+    +    DE    +  M      PD  TY++L       
Sbjct: 254 DQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRT 313

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLK 313
           G  + M   +   L K + + + T   +L+     G + K E+  + L+++     T + 
Sbjct: 314 GDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIY 373

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVR 372
             L+    +V      FS    + + + SR  R + +    L++  C +      + +V 
Sbjct: 374 NTLINGYCQVRDLQGAFS----IFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVM 429

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           EME + V  +V T N ++ AY +    +    +LS++  + +K ++++ G +  A
Sbjct: 430 EMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKA 484



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 148/384 (38%), Gaps = 61/384 (15%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFN 191
           +R + F   K +      G ++EA+   + M   EG A  P    YN +I G  + GK +
Sbjct: 154 ARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEG-APPPDAFSYNVVIAGLWRSGKGS 212

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL   +EM +  ++P   TY+ +I  + K    +        M  DG  P+ +TYN+L+
Sbjct: 213 DALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLL 272

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                AG +         M +  M     T   + D     G             +SRT 
Sbjct: 273 SGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG-------------DSRTM 319

Query: 312 LK---EDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           L    E L +    V I  Y  S  L+ L  D   ++ + E V  L +L H  L+    I
Sbjct: 320 LSLFGESLKKG---VIIGAYTCSILLNGLCKD--GKVAKAEQV--LEMLVHTGLVPTTAI 372

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                              N ++  Y +++D +    +  ++ +RH++PD +T   L   
Sbjct: 373 ------------------YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNAL--- 411

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVE-INTDPLV------LAVYGKGHFLRYCEEVYSSLE 480
                +G   +EM      L   +E    DP V      +  YG+   L  C  V S ++
Sbjct: 412 ----INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQ 467

Query: 481 PYSREKKRWTYQNLIDLVIKHNGK 504
               +    ++ +++    K NGK
Sbjct: 468 DKGIKSNVISFGSVVKAFCK-NGK 490



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 124 QVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           Q F + + ++ S ++   F    ++  LC+   ++EA      +    L+P +  YN+II
Sbjct: 528 QAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTII 587

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
                 G  + AL  L EM + ++ P   TY  L+ A G
Sbjct: 588 SACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALG 626


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 22/248 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+ESY      N   A+ +R+      P  +           +  +++      + ++
Sbjct: 178 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVT----------YQIILKTFVEGDKFKE 227

Query: 122 IPQVFDMWKNIEKSRINEFNSQKI----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
             +VF+   + +KS +     QK+    I M  + G  ++A + F  M G  +  S   Y
Sbjct: 228 AEEVFETLLDEKKSPLKP--DQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTY 285

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   S    + E     ++M+   + P   +Y  LI+AYG+ +  +E     + M  
Sbjct: 286 NSLM---SFETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P H  YN+L+  FA +G++++ +  +KSM   R+     +   +L AY+N   ++ 
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402

Query: 298 MEKFYKRL 305
            EKF+KR+
Sbjct: 403 AEKFFKRI 410



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 123/308 (39%), Gaps = 15/308 (4%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L+ + +M  SP   +Y  L+++YG+    +  +   + M+  G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYM--NFGMLD 296
             P  +TY ++++ F      K  E  ++++L  K+  L+    +  +  YM    G  D
Sbjct: 205 PEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYD 264

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
           K  K +  ++    P        L          S++     D   R G    V    LL
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVSKI----YDQMQRSGIQPDVVSYALL 320

Query: 357 SHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             A   + R  +  SV  EM  A VR      NI+L A+      +  + +   +    +
Sbjct: 321 IKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRI 380

Query: 415 KPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRY 471
            PD+ +   +  A     D  GA + +KRI   GF    V   T   ++  Y K + +  
Sbjct: 381 FPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT---MIKGYAKANDVEK 437

Query: 472 CEEVYSSL 479
             EVY  +
Sbjct: 438 MMEVYEKM 445



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 65/133 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  ++  G   +A      M+   + P   +Y  +
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 390

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +K+DG  P+ +TY  +I+ +A A  +++M   Y+ M    +
Sbjct: 391 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGI 450

Query: 276 HLRSSTMVAILDA 288
               + +  I+DA
Sbjct: 451 KANQTILTTIMDA 463


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC  G    A++ F  MEG     + + YN II G    G   +A++  
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +M   P   TY+ LI  Y      +     L +MK +GC PD  TYN L+  F+  
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L+     ++ M+   ++    +  A++D +   G +D      KR+
Sbjct: 492 GKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 129 WKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188
           W     S  N     +II  LC  G +E+A+  F++M      P++  YN++I+GY   G
Sbjct: 398 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 457

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
             N A   L+ MKE    P   TY+ L+  + K+   +      + M   G +P+ ++Y 
Sbjct: 458 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 249 LLIQEFACAG-------LLKRME 264
            LI   +  G       LLKRME
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRME 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAF 162
           + + AVI  L   +R  +  ++ D  K +E+  + N      +I  LC  G  + A + F
Sbjct: 549 ESYNAVINGLSKENRFSEAEKICD--KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 606

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +ME     P+L  Y+S+I+G  + GK +EA      M E+   P  DTY  L+    + 
Sbjct: 607 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRK 662

Query: 223 KMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAGL-LKRMEGTYKSMLTKRMHLRSS 280
             + E +  +K MK  G  PD  I Y+LLI    C  L +      + S+  K   L  S
Sbjct: 663 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAH--CKNLEVDHALKIFHSIEAKGFQLHLS 720

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLL 306
              A++ A    G +++ +  +  +L
Sbjct: 721 IYRALICALCKAGQVEEAQALFDNML 746



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+   +++    + G +E A   FQEM    L P+   Y ++I G+SK GK + AL  L
Sbjct: 477 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLL 536

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID-MCLKMMKLDGCSPDHITYNLLI 251
             M+EM  +P  ++Y+ +I    K   + E + +C KM++  G  P+ ITY  LI
Sbjct: 537 KRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVE-QGLLPNVITYTTLI 590



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+ +    F ++ ++EK +   N +    +I  LC+EG  +EA R    M     +P+L+
Sbjct: 595 RNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLD 650

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM- 234
            Y++++ G  + G+F EA   + +MKE    P  + Y  L+ A+ K     E+D  LK+ 
Sbjct: 651 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL---EVDHALKIF 707

Query: 235 --MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             ++  G       Y  LI     AG ++  +  + +ML K  +        ++D  +  
Sbjct: 708 HSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKE 767

Query: 293 GMLD 296
           G LD
Sbjct: 768 GELD 771



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           ++E A   +++M    ++PSL  +N++I+  SK GK  EA L L+++ + +LSP   TY 
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            LI  + + +  D        M  +GC P+ +TY+ LI      G +       + M+ K
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G +  A R    M+    +P    YN ++ G+SK GK   A  +  EM E  L+P   +
Sbjct: 456 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVS 515

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LI  + K    D     LK M+  GC+P+  +YN +I   +        E     M+
Sbjct: 516 YTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV 575

Query: 272 TKRMHLRSSTMVAILDA 288
            + +     T   ++D 
Sbjct: 576 EQGLLPNVITYTTLIDG 592



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLC 150
           QI Q+D   + D F      +    R+R +   F ++  +  E    N      +I  LC
Sbjct: 223 QIFQYD--LSPDVF-TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLC 279

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
            EG ++EA+   +EM    ++P++  Y   I     I    EA+  +  MK+    P   
Sbjct: 280 NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339

Query: 211 TYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           TY  LI    +  K+   I +  KM+K +G  P+ +TYN LI E    G
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGG 387



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    ++ A   F  M      P+   Y+++I+G    G+ +EAL  L EM E  + P  
Sbjct: 244 CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY   I A    +  +E    +  MK  GC P+  TY  LI   +  G L+   G Y  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 270 MLTKRMHLRSSTMVAILD 287
           ML + +   + T  A+++
Sbjct: 364 MLKEGLVPNTVTYNALIN 381


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 123/284 (43%), Gaps = 9/284 (3%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA R    ++G  + PS   YN ++H     G+  +AL+ L+ M     +P  
Sbjct: 131 CRVGRLDEARRV---VDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDV 187

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ L++A  K + Y +    + +M+++GC+P ++TYN+++      G +        S
Sbjct: 188 VTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNS 247

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           + +      +     +L      G  + +E+    + +   P  E  +  +     +  +
Sbjct: 248 LPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGL 307

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANI 388
           F R   L + ++       +V    ++S  C   H  G   ++  M++   + N+ T NI
Sbjct: 308 FQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNI 367

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           ++      + ++    L++++      PDI+T   +     IGF
Sbjct: 368 LVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTI-----IGF 406



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 36/156 (23%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  IIG LC++GL  +AV  F++M      P+   Y+S+I G +K GK  ++L  LNE
Sbjct: 400 FNT--IIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNE 457

Query: 200 M----------------------------------KEMNLSPQSDTYDGLIQAYGKYKMY 225
           M                                  ++  +SPQ+  Y+ ++    +    
Sbjct: 458 MGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKT 517

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           D+    L  M  DGC PD  TY++LIQ  A  G +K
Sbjct: 518 DQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMK 553



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 105 HFWAVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           ++  V++ L+ + R   + + + +M+   E    +E     +I  LC+EGL + A+R  +
Sbjct: 259 NYNTVLKGLRTAGRWEDVEELIAEMFS--ENCPPSEATLSVVISSLCQEGLFQRAIRLLE 316

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M       ++  YN+++ G  + G  + AL  L+ M+     P   TY+ L++     +
Sbjct: 317 KMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAE 376

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
            +++ +  +  M    C PD +T+N +I      GL  +    +K M  K     S T  
Sbjct: 377 RWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYS 436

Query: 284 AILDAYMNFGMLDKMEKFYKRLLN 307
           ++++     G   KME+  + LLN
Sbjct: 437 SVIEGLAKTG---KMEQSLE-LLN 456



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           RQ  ++ D+ + +E           I+  +C EG ++ A      +  +   P+   YN+
Sbjct: 204 RQAMELIDLMR-VEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNT 262

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++ G    G++ +    + EM   N  P   T   +I +  +  ++      L+ M    
Sbjct: 263 VLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHD 322

Query: 240 CSPDHITYNLLI 251
           C+ + +TYN ++
Sbjct: 323 CTANIVTYNAVV 334



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + +VI  L   +++ ++ Q  ++   +     N E N   +   L EE  + EA++   +
Sbjct: 435 YSSVIEGL---AKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHK 491

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           ++   + P   +YN+I+ G  + GK ++A+  L+ M      P   TY  LIQ 
Sbjct: 492 LQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQG 545


>gi|449520819|ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 406

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 27/188 (14%)

Query: 135 SRINEFNSQK---------IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           S IN F+S           ++    EEGL+ EA+  F  M+   LKP L  +N+++ G++
Sbjct: 221 SSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFA 280

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSP 242
           + G+ N AL +L  M+E  L P+ ++++G+I      G +K  D +D+ + M+     +P
Sbjct: 281 RYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFK--DALDVFINMLLFPE-NP 337

Query: 243 DHITYNLLIQEFACAGL----LKRMEGTY--KSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           + +T   ++   ACAGL    L R    Y  K  L   +++  S    ++D Y   G  D
Sbjct: 338 NSVTVASILP--ACAGLRDLGLGRAVHAYALKCELCTNIYVEGS----LVDMYSKCGQDD 391

Query: 297 KMEKFYKR 304
           + E+ + +
Sbjct: 392 RAEEIFAK 399


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 1/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +  AVR  +EME     P++  Y  ++H + K G +++    L EM    L+  
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           S  Y+G+I A  K    DE    ++ M+  GC+PD  +YN +I        ++  E  ++
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           ++L + +     T   I+ A +  G      +  K ++     L       L +   K+ 
Sbjct: 476 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 535

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              R   L +++A +  +   V    L+S  C     R    + ++M +  +  ++ T N
Sbjct: 536 NVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYN 595

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    KM        LL +L   +V PDI+T  IL
Sbjct: 596 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 632



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 128/315 (40%), Gaps = 40/315 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            L+   R RQ  +   M   + +  +  FN+  +IG    EG + EA   ++ M     +
Sbjct: 286 LLQGLCRVRQADEARAMLGRVPELNVVLFNT--VIGGCLAEGKLAEATELYETMGLKGCQ 343

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y+ ++HG  K+G+   A+  L EM++   +P   TY  ++ ++ K  M+D+    
Sbjct: 344 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M   G + +   YN +I      G +    G  + M ++  +    +   I+    N
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
              +++ E  ++ L      L+E +V                       A+ I    ++ 
Sbjct: 464 NEQMEEAEHMFENL------LEEGVV-----------------------ANGITYNTII- 493

Query: 352 CLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
                 HA L   R  D+V   +EM       +V + N ++ A  K  +     VLL E+
Sbjct: 494 ------HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 410 PTRHVKPDIVTIGIL 424
             + +KP+ V+  IL
Sbjct: 548 AEKGIKPNNVSYNIL 562



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 99/263 (37%), Gaps = 42/263 (15%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G  +EA+   + M      P   +Y ++IH     G   EA   LNEM  M  +  
Sbjct: 185 LCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK-RMEGTY 267
            +T+D +++         E    +  M   GC P  +TY  L+Q     GL + R     
Sbjct: 245 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQ-----GLCRVRQADEA 299

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIK 326
           ++ML +   L       ++   +  G L +  + Y+ + L    P          + +  
Sbjct: 300 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQP----------DAHTY 349

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
           + +   L  LG     RIG       +RLL               REME      NV T 
Sbjct: 350 SILMHGLCKLG-----RIGSA-----VRLL---------------REMEKKGFAPNVVTY 384

Query: 387 NIILLAYLKMKDFKHLRVLLSEL 409
            I+L ++ K   +   R LL E+
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEEM 407



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 5/225 (2%)

Query: 121 QIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+ +   M++N+  E    N      II  L  +G  ++AVR  +EM        +  YN
Sbjct: 466 QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYN 525

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKL 237
            +I    K G  + +L+ L EM E  + P + +Y+ LI    K  ++ D +++  +M+  
Sbjct: 526 GLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLN- 584

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G +PD +TYN LI      G +       + +  + +H    T   ++  +    +LD 
Sbjct: 585 QGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDD 644

Query: 298 MEKFYKRLLNSRTPLKE-DLVRKLAEVYIKNYMFSRLDDLGDDLA 341
                 R + +  P+ +  +++ L +   K Y+ ++ DD    L 
Sbjct: 645 AAMLLNRAMAAVCPVGDRRIMQILPDKNFKLYLHTKGDDFQHSLG 689



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 31/194 (15%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q +I  LC++G + EA     EM        +  ++ ++ G   +G+  EA   ++ M  
Sbjct: 214 QTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMT 273

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDE-------------------IDMCL----------- 232
               P   TY  L+Q   + +  DE                   I  CL           
Sbjct: 274 KGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATEL 333

Query: 233 -KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M L GC PD  TY++L+      G +       + M  K       T   +L ++  
Sbjct: 334 YETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCK 393

Query: 292 FGMLDKMEKFYKRL 305
            GM D      + +
Sbjct: 394 NGMWDDTRALLEEM 407


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA++ F+ M+   + P    YNS+I  Y ++G+ NEA+    ++K +N    + TY  +
Sbjct: 195 EEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAI 254

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
              Y +   Y  I   ++ M+  G SP+ +  N L+   + AG + + +  +  M T  +
Sbjct: 255 ANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGV 314

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                T+  +++ Y   G  D+  + Y+ L
Sbjct: 315 SPTPVTLSILVEMYTRVGAYDQAFEVYETL 344



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I  +    G  +  ++  QEM      P+  I N+++   SK GK N+A    NEM+   
Sbjct: 254 IANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSG 313

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   T   L++ Y +   YD+     + +K +G   D   YN L++     G +++ E
Sbjct: 314 VSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAE 373

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSR--TPLKEDLVR-- 318
              K M     +    T    ++ Y   GM+D   + + ++  LN +  TPL   ++R  
Sbjct: 374 DILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRAC 433

Query: 319 KLA-EVYIKNYMFSRLDDLG 337
           KLA E+   + +F  + + G
Sbjct: 434 KLAGEIEQASKIFDEMMESG 453



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 84/192 (43%), Gaps = 2/192 (1%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + R RQ  +    ++ ++   I  +E     +I M    G + EAV  +++++    K  
Sbjct: 188 AKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD 247

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y +I + Y++ G +   +  + EM++   SP +   + L+    K    ++      
Sbjct: 248 TVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFN 307

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G SP  +T ++L++ +   G   +    Y+++ T+      +   +++ A +  G
Sbjct: 308 EMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 294 MLDKMEKFYKRL 305
            +++ E   K +
Sbjct: 368 RVEQAEDILKEM 379



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)

Query: 124 QVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           Q F++++ ++    K  +  +NS  ++    E G +E+A    +EM+     P    Y +
Sbjct: 336 QAFEVYETLKTEGWKCDVAVYNS--LMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRT 393

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK----MM 235
            ++ Y+  G  + A    +++  +N  P +  +  +I+A    K+  EI+   K    MM
Sbjct: 394 AMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRA---CKLAGEIEQASKIFDEMM 450

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +   CSPD     +L+   +C  + K                     +AILD    F   
Sbjct: 451 ESGCCSPDERVSGMLL---SCMAMAK----------------SDDERLAILDCLDKFNA- 490

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
             + +    ++    P   D V ++ E +I +Y
Sbjct: 491 -PLHELMSAIVRKEEPRSRDEVAEMVEKFISDY 522


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   ++EA+  F+EM    + P +  YNS+I G  K+GK + AL  ++EM +  
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  ++ A  K    D+    L  +K  G  P+  TY +LI      G L+   
Sbjct: 403 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAH 462

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  ++  +T   ++  + N G+ D+
Sbjct: 463 NIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDE 495



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 121 QIPQVFDMWKN--IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+    D++    +E  + + +    ++   C++G M+E    F  M    +KP++  Y 
Sbjct: 247 QLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC 306

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S++ GY  + + N+A   L  M +  ++P   +Y+ LI  + K K  DE     K M   
Sbjct: 307 SLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHK 366

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-----TMVAILDAYMNFG 293
              PD +TYN LI      GL K  + +Y   L   MH R       T  +ILDA     
Sbjct: 367 HIIPDVVTYNSLID-----GLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421

Query: 294 MLDK 297
            +DK
Sbjct: 422 QVDK 425



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/330 (18%), Positives = 119/330 (36%), Gaps = 3/330 (0%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLM 155
           DG+  + +       +    + + +   FD++  +    I  N      +I      G +
Sbjct: 189 DGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQL 248

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A+  F +M    +KP +  +N ++ G+ K GK  E       M +  + P   TY  L
Sbjct: 249 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 308

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +  Y   K  ++    L  M   G +PD  +YN+LI  F     +      +K M  K +
Sbjct: 309 MDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                T  +++D     G +    K    + +   P        + +   KN+   +   
Sbjct: 369 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIA 428

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYL 394
           L   L  +  R  +     L+   C         ++  ++        V T  +++  + 
Sbjct: 429 LLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFC 488

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               F     LLS++      PD VT  I+
Sbjct: 489 NKGLFDEALALLSKMKDNSCIPDAVTYEII 518



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 114/292 (39%), Gaps = 38/292 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC +G + +A+     +     +     Y ++IHG  K+G+   AL  L
Sbjct: 126 NTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLL 185

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +    + P    Y  +I    K K + D  D+  +M+   G SP+ +TY+ LI  F  
Sbjct: 186 RRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVS-KGISPNVVTYSALISGFFT 244

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G LK     +  M+ + +     T   ++D +   G + + +  +  ++  +  +K ++
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMM--KQGIKPNV 302

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREME 375
           V                                 +C  L+   CL+       S++  M 
Sbjct: 303 V--------------------------------TYC-SLMDGYCLVKEVNKAKSILYTMS 329

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              V  ++ + NI++  + K+K       L  E+  +H+ PD+VT   L D 
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDG 381



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 66  LLVESYHEH-----QALNALIQRLNK--KVSCPLQILQ--HDGDWTKDHFWAVIRFLKNS 116
           L  E +H+H        N+LI  L K  K+S  L+++   HD     D        L   
Sbjct: 359 LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPD-IITYSSILDAL 417

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            ++ Q+ +   +   ++    R N +    +I  LC+ G +E+A   F+++       ++
Sbjct: 418 CKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITV 477

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
             Y  +IHG+   G F+EAL  L++MK+ +  P + TY+ +I++
Sbjct: 478 NTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 54/109 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+   +++A+    +++   ++P++  Y  +I G  K G+  +A     ++    
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            +   +TY  +I  +    ++DE    L  MK + C PD +TY ++I+ 
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 148/343 (43%), Gaps = 36/343 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++  LC +GL+  A++   EM      P ++ YN +I+G  K+G  ++A
Sbjct: 358 KPDIVVYNS--LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 415

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + +N+       P   T++ LI  Y K    D     ++ M   G +PD ITYN ++  
Sbjct: 416 TVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 475

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPL 312
              AG +  +  T++ M+ K  H    T   +++   NF   +KME+  K ++  S+  L
Sbjct: 476 LCKAGKVNEVNETFQEMILKGCHPNPITYNILIE---NFCRSNKMEEASKVIVKMSQEGL 532

Query: 313 KEDLV--RKLAEVYIKN-------YMFSRLDDLG-----DDLASRIGRTELVWCLRLLSH 358
             D V    L   + +N        +F +L++ G     D   + IG           + 
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG-----------AF 581

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           +  L+    + +  EM S   R +  T  +++    K  +     + L E+  +   P +
Sbjct: 582 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 641

Query: 419 VTIGILYDARRIG---FDGTGALEMWKRIGFLFKTVE--INTD 456
            T G + ++  +    F   G + +  +IG + + V+  +N D
Sbjct: 642 STFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNAD 684



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN F     I  LCE G + EAVR    M  +A+ P +  YN++I G  K     EA+ +
Sbjct: 220 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHY 278

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M      P   TY+ +I  Y K  M  E    LK     G  PD +TY  LI     
Sbjct: 279 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 338

Query: 257 AGLLKR 262
            G ++R
Sbjct: 339 EGDVER 344



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 44/318 (13%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  LC+ G + EA     ++    +  +L  YN  I G  + G+  EA+  ++ M+  
Sbjct: 192 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY 251

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P   TY+ LI+   K  M  E    L+ M   GC PD  TYN +I  +    +++  
Sbjct: 252 AV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 310

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
               K  + K       T  ++++     G +++  + +         +K D+V      
Sbjct: 311 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEA--QAKGIKPDIV------ 362

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLR-LLSHACLLSHRGIDSVVREMESAKVRWN 382
            + N +   L                  CL+ L+ HA          V+ EM       +
Sbjct: 363 -VYNSLVKGL------------------CLQGLILHAL--------QVMNEMAEEGCHPD 395

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEM 440
           + T NI++    KM +     V++++   +   PD+ T   L D   +R+  D   AL++
Sbjct: 396 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLD--SALQL 453

Query: 441 WKRI---GFLFKTVEINT 455
            +R+   G    T+  N+
Sbjct: 454 VERMWEYGIAPDTITYNS 471


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 34/280 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  +C+  L+ +A   + +M    + P +  YN++I G+S + K N A+   N+MK+ N
Sbjct: 207 IIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKEN 266

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T++ L+  + K    ++  + L +M  D   PD +TYN L+  +     + + +
Sbjct: 267 INPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAK 326

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM +  +         +++ +    M+D+    ++ +            RK+    
Sbjct: 327 DIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEM----------RCRKI---- 372

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
           I N +      L D L  ++GR  + + L+L               V EM       N+ 
Sbjct: 373 IPNVV--TYSSLIDGLC-KLGR--IFYALKL---------------VDEMHDRGQPPNIV 412

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           T + IL A  K         LL+ L  + ++PD+ T  IL
Sbjct: 413 TYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTIL 452



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+  +++EA+  F+EM    + P++  Y+S+I G  K+G+   AL  ++EM +  
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  ++ A  K    D+    L  +K  G  PD  TY +LI+    +G L+  +
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  +L       ++  + + G  DK
Sbjct: 467 NVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDK 499



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S   ++    D++  ++K  IN   +    ++   C+EG + +A      M    +KP +
Sbjct: 247 SAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDV 306

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YNS++ GY  I K N+A    + M    +      Y  ++  + K KM DE     + 
Sbjct: 307 VTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEE 366

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-----TMVAILDA 288
           M+     P+ +TY+ LI      GL K     Y   L   MH R       T  +ILDA
Sbjct: 367 MRCRKIIPNVVTYSSLID-----GLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDA 420



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           FN+  +I  LC +G + +A+    ++  +GF L      Y ++I+G  K+G+   AL  L
Sbjct: 134 FNT--LIKGLCLKGHIHQALHFHDKVVAQGFHLDQV--SYGTLINGLCKVGRITAALQLL 189

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +    + P +  Y+ +I    K K+  D  D+  +M+    C PD  TYN LI  F+ 
Sbjct: 190 KRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRIC-PDVFTYNALISGFSA 248

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
              L      +  M  + ++    T   ++D +   G ++  +     ++  +  +K D+
Sbjct: 249 VSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMM--KDDIKPDV 306

Query: 317 V--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--- 371
           V    L + Y      ++  D+ D +AS      +     +++  C +  + +D  +   
Sbjct: 307 VTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKI--KMVDEAINLF 364

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            EM   K+  NV T + ++    K+    +   L+ E+  R   P+IVT   + DA
Sbjct: 365 EEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDA 420



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + + + +  ++++ +   +I  N      +I  LC+ G +  A++   EM      P++ 
Sbjct: 353 KIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIV 412

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+SI+    K    ++A+  L  +K+  + P   TY  LI+   +    ++     + +
Sbjct: 413 TYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDL 472

Query: 236 KLDGCSPDHITYNLLIQEFACAG-------LLKRME 264
            + G + D   Y ++IQ F   G       LL +ME
Sbjct: 473 LVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKME 508



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 114/298 (38%), Gaps = 19/298 (6%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I    + GL   +   F ++      P+   +N++I G    G  ++AL F ++
Sbjct: 97  FTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDK 156

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-LDG--CSPDHITYNLLIQEFAC 256
           +          +Y  LI    K      I   L+++K +DG    P+ + YN++I     
Sbjct: 157 VVAQGFHLDQVSYGTLINGLCKV---GRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCK 213

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-----MNFGMLDKMEKFYKRLLNSRTP 311
           A L+      Y  M+ KR+     T  A++  +     +N+  +D   K  K  +N    
Sbjct: 214 AKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYA-IDLFNKMKKENINPNVY 272

Query: 312 LKEDLVRKLA-EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS 369
               LV     E  + +        + DD+     + ++V    L+   C ++       
Sbjct: 273 TFNILVDGFCKEGKVNDAKVVLAIMMKDDI-----KPDVVTYNSLMDGYCSINKVNKAKD 327

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +   M S  V  NV     ++  + K+K       L  E+  R + P++VT   L D 
Sbjct: 328 IFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G +E+A   F+++  +G+ L   +  Y  +I G+   G F++AL  L++M++
Sbjct: 452 LIKGLCQSGRLEDAQNVFEDLLVKGYNL--DVYAYTVMIQGFCDKGFFDKALALLSKMED 509

Query: 203 MNLSPQSDTYDGLI 216
               P + TY+ +I
Sbjct: 510 NGCIPNAKTYELVI 523



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 49/107 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+   +++A+     ++   ++P +  Y  +I G  + G+  +A     ++    
Sbjct: 417 ILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKG 476

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            +     Y  +IQ +     +D+    L  M+ +GC P+  TY L+I
Sbjct: 477 YNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 85  NKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQ 143
           N K+   + I+  DG W +      +R L NS     +  V D   +I KS + +     
Sbjct: 467 NSKLEMAMDIV--DGMWNEGRL--ALRRLGNSF----VSLVSD--SSISKSCLPDRITYS 516

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            ++  LC+EG  +EA +   EM G  + P   IY++ IHGY   GK + A+  L +M++ 
Sbjct: 517 TLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKR 576

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + +P + +Y+ LI  + + +  DEI   +  MK  G S + +TYN LI+ F   G++ + 
Sbjct: 577 SCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKA 636

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                 ML   +    ++   ++ A+         ++ +   L++
Sbjct: 637 MPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALST 681



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 121/296 (40%), Gaps = 24/296 (8%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + EA     EM    ++P+   YN I+ G  K GK  +     + ++   ++P 
Sbjct: 324 LVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPD 383

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  L+ AY         +  L  M   GC+P+  TYN+L+Q    AG    +E   +
Sbjct: 384 VVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLE 443

Query: 269 SMLTKRMHLRSSTMVAILDAY---------MNF--GMLDKMEKFYKRLLNSRTPLKED-- 315
            M  K   L +++   I+D           M+   GM ++     +RL NS   L  D  
Sbjct: 444 RMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSS 503

Query: 316 -----LVRKLAEVYIKNYMF--SRLDDLGDDLASRIGR---TELVWCLRLLSHACLLSHR 365
                L  ++    + N +    R D+    L   IG+    + V     +   C+    
Sbjct: 504 ISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKT 563

Query: 366 GID-SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +   V+R+ME      +  + N+++  + + +    +  L+SE+  + +  +++T
Sbjct: 564 SLAIKVLRDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMT 619



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  + N +    I+  LC+EG   +  R    +    + P +  Y S++H Y   G    
Sbjct: 343 EGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTA 402

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           A   L+EM +   +P   TY+ L+Q+  K     E++  L+ M   G S D  + N++I
Sbjct: 403 ANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIII 461



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 78  NALIQRLNKKVSCPLQILQHDGDWTKDHFWAVI--RFLKNSSRSRQIPQVFDMWKNIEKS 135
           NAL++ L+      L     D    ++ F + I  R    + RS     V D    +   
Sbjct: 147 NALLEALSAAGRMDLARRVFDAMPARNEFSSGILARGYCRAGRSADALAVLDAMPEM--- 203

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
             N      ++   C EG ++EA R    M    L P++  +N  I    K G+  EA  
Sbjct: 204 --NLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYR 261

Query: 196 FLNEMKEM--NLSPQSD--TYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
             N+M+E      P+ D  T+D ++  +    M DE  + + +M+  G
Sbjct: 262 IFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGG 309



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 22/167 (13%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII--HGYSKIGKFNEALLFL 197
           F    ++  L   G M+ A R F  M      P+   ++S I   GY + G+  +AL  L
Sbjct: 144 FTRNALLEALSAAGRMDLARRVFDAM------PARNEFSSGILARGYCRAGRSADALAVL 197

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M EMNL       + ++  + +    DE +  +  M+  G +P+ +T+N  I     A
Sbjct: 198 DAMPEMNLV----VCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKA 253

Query: 258 G-------LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           G       +   M+  ++  L +   +   T   +L  + + GM+D+
Sbjct: 254 GRVLEAYRIFNDMQEAWEQGLPRPDQV---TFDVMLSGFCDAGMVDE 297



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +E ++   EM+   +  ++  YNS+I  +   G  N+A+  L+EM +  + P   ++  L
Sbjct: 599 DEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLL 658

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I+A+ K   +         + L  C    + Y L+  E +        +   ++ L  R+
Sbjct: 659 IKAFCKTADFSAAQRVFD-VALSTCGQKEVLYCLMCTELSTYARWIEAKNILETALEMRI 717

Query: 276 HLRS 279
            ++S
Sbjct: 718 SIQS 721


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+  EA R F+++E     P    YNS+++ +++ G  ++      +M +M       TY
Sbjct: 343 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 402

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  YGK   +D        MKL G SPD +TY +LI     A ++K        ML 
Sbjct: 403 NTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN 462

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            R+     T  A++  Y   G   + E+ +  +L  R+ +K D
Sbjct: 463 ARVKPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPD 503



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 152/344 (44%), Gaps = 21/344 (6%)

Query: 148  MLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-L 205
            + CEE  L  EA + F +M  + ++PS  +Y S++  Y K+G    A   +++ +E   L
Sbjct: 684  LCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLL 743

Query: 206  SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
                  + G+I+AYGK K++ + +  +  ++      D   +N LI  +A +G  +R   
Sbjct: 744  FDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARA 803

Query: 266  TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-------SRTPLKEDLVR 318
             + +M+         ++  ++ A +  G LD++    + L +       S   L  D   
Sbjct: 804  IFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFA 863

Query: 319  KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                ++    ++  +   G      + R      + LL+    +  R ++++V EME A+
Sbjct: 864  HAGNIFEVKKIYQGMKAAGYFPTMHLYRI----MIGLLAKGKRV--RDVEAMVSEMEVAR 917

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD---IVTIGILYDARRIGFDGT 435
             + +++  N +L  Y  + DFK    +   +    +KPD     T+ ++Y   R   +G 
Sbjct: 918  FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 977

Query: 436  GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
              +   +R+G   K   ++T   +++ +GK   +   EE++  L
Sbjct: 978  SLMHEMRRVGLEPK---LDTYKSLISAFGKLQMVEQAEELFEGL 1018



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G  ++  + +Q ++   LKP  + YN++I  Y +  +  E L  ++EM+ + L P+ DTY
Sbjct: 936  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 995

Query: 213  DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
              LI A+GK +M ++ +   + +    C  D   Y+++++ F  +G   + E     M  
Sbjct: 996  KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKE 1055

Query: 273  KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
              +    +TM  ++ +Y   G  ++ EK    L     PL       + + Y+KN
Sbjct: 1056 AGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKN 1110



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +IG+L +   + +      EME    KP L I+NS++  Y+ IG F +       ++E  
Sbjct: 893  MIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAG 952

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            L P  DTY+ LI  Y + +  +E    +  M+  G  P   TY  LI  F    ++++ E
Sbjct: 953  LKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAE 1012

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              ++ +L+K   L  S    ++  + N G   K EK 
Sbjct: 1013 ELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKL 1049



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+    E+    ++P +  YN++I   S+     EA+   N+M      P   TY+ +I 
Sbjct: 278 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 337

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            YG+  M  E     K ++  G  PD +TYN L+  FA  G + +++   + M+      
Sbjct: 338 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 397

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
              T   I+  Y   G  D   + Y  + L+ R+P
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 432



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+IIH Y K G+ + A    ++MK    SP + TY  LI + GK  M  E    +  M 
Sbjct: 402 YNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEML 461

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML---TKRMHLRSSTMVAILDAYMNFG 293
                P   T++ LI  +A AG     E T+  ML    K  HL  S M   LD  + F 
Sbjct: 462 NARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM---LDILLRFN 518

Query: 294 MLDKMEKFYKRLL 306
              K  K Y+ ++
Sbjct: 519 ESGKAMKLYQEMV 531



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++  L  +++     ++F   +    + +  +N+  ++G+    G   +       M   
Sbjct: 194 ILSVLGKANQEALAVEIFARAEAASGNTVQVYNA--MMGVYARTGRFTKVQELLDLMRSR 251

Query: 169 ALKPSLEIYNSIIHGYSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
             +P L  +N++I+   K G    N A+  LNE++   + P   TY+ LI A  +    +
Sbjct: 252 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 311

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E       M    C PD  TYN +I  +   G+ +     +K + +K     + T  ++L
Sbjct: 312 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 371

Query: 287 DAYMNFGMLDKMEKF 301
            A+   G +DK+++ 
Sbjct: 372 YAFAREGNVDKVKEI 386



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +  +++EA     EM    +KP+L  ++++I GY+K GK  EA    + M    
Sbjct: 440 LIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSG 499

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P    Y  ++    ++    +     + M L    PDH  Y ++++
Sbjct: 500 IKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLR 547



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 11/194 (5%)

Query: 122  IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
            I ++ DM   I KS I       ++      G + E  + +Q M+     P++ +Y  +I
Sbjct: 840  IQELQDMGFKISKSSIT-----LMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMI 894

Query: 182  HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               +K  +  +    ++EM+     P    ++ +++ Y     + +     ++++  G  
Sbjct: 895  GLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLK 954

Query: 242  PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR---MHLRSSTMVAILDAYMNFGMLDKM 298
            PD  TYN LI  + C    +R E     M   R   +  +  T  +++ A+    M+++ 
Sbjct: 955  PDEDTYNTLILMY-CRD--RRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQA 1011

Query: 299  EKFYKRLLNSRTPL 312
            E+ ++ LL+    L
Sbjct: 1012 EELFEGLLSKECKL 1025


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 123/303 (40%), Gaps = 11/303 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC  G++ EA+  F  M+     P   +Y +++HG    G+  EA   L++
Sbjct: 143 FTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSD 202

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
                  P    Y+ LI  Y      +      + M ++GCSP+  TY  LI  F  +  
Sbjct: 203 AMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRK 262

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L R    +  M+   +     T  A++    + G LD   +  + + NS     E     
Sbjct: 263 LDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSV 322

Query: 320 LAEVYIKNYMFSRLDD----LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREM 374
           L +   K+    R+ +    LG  +   I   E+V+   L+   C        D +++ +
Sbjct: 323 LIDALCKH---ERVGEAQLLLGSLIQKGIKVNEIVY-TSLIDGLCKAGRFAAADRLMQTL 378

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD--ARRIGF 432
            S     +  T + ++    + K+     ++L ++  + V+P  VT  I+ D   R +G 
Sbjct: 379 VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGA 438

Query: 433 DGT 435
           DG+
Sbjct: 439 DGS 441



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 6/194 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++NE     +I  LC+ G    A R  Q +      P    Y+S+I G  +  + +EA+L
Sbjct: 349 KVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAML 408

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            L++M E  + P   TY  +I    +    D     L  M   G  PD  TY + ++ + 
Sbjct: 409 VLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYC 468

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMV---AILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
             G   RME     ML    H     +V   A++  Y N G+  +    +K ++ +    
Sbjct: 469 HEG---RMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKP 525

Query: 313 KEDLVRKLAEVYIK 326
            E+    L  + IK
Sbjct: 526 NEESYTVLLRLLIK 539



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 142/349 (40%), Gaps = 17/349 (4%)

Query: 95  LQHDGDWTKDHFWA-VIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCE 151
           +Q DG     H +A ++  L  + R+R+   +    M +  E    N      +I   C 
Sbjct: 168 MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEP---NVVVYNALIDGYCN 224

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
            G +E AV  F+ M+     P++  Y  +I G+ K  K + A++  + M +  L P   T
Sbjct: 225 VGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT 284

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LIQ        D     L+ M+  G  P+  T ++LI        +   +    S++
Sbjct: 285 YTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLI 344

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            K + +      +++D     G     ++  + L++            L +   +    S
Sbjct: 345 QKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELS 404

Query: 332 RLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
               + DD+  + +  + + + + +      +   G   ++ +M +A ++ +V T  I +
Sbjct: 405 EAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFV 464

Query: 391 LAYL---KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
            +Y    +M+D +H+ + + +     V P++VT    Y+A   G+   G
Sbjct: 465 RSYCHEGRMEDAEHMMLHMVD---HGVCPNLVT----YNALICGYANLG 506



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 122/324 (37%), Gaps = 17/324 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           FL   +R R +  +      +    +  + +  +I   C  G +  + R    +      
Sbjct: 47  FLMALARHRMLADMESFASRMPARNLRTYTT--LINAYCLAGDLPASKRHLSSLLRAGFA 104

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y S + GY + G    A      M        + TY  L+       M  E    
Sbjct: 105 PDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSV 164

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
              M+ DGC+PD   Y  ++     AG  +  E      + +          A++D Y N
Sbjct: 165 FAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCN 224

Query: 292 FGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
            G L+     ++R+ +N  +P     VR   E+ I  +  SR  D    L SR+    LV
Sbjct: 225 VGDLELAVDVFERMDVNGCSP----NVRTYTEL-ISGFCKSRKLDRAMMLFSRMVDAGLV 279

Query: 351 WCLRLLSHACLLSHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
               ++++  L+  +  D        +++ ME++ +  N  T ++++ A  K +     +
Sbjct: 280 P--NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQ 337

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
           +LL  L  + +K + +    L D 
Sbjct: 338 LLLGSLIQKGIKVNEIVYTSLIDG 361



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 103 KDHFWAVIRFLKNSSRSRQIP-QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           ++ +  ++R L     S  IP     +WK  E   ++              GL+EE V+ 
Sbjct: 527 EESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLH--------------GLLEEMVK- 571

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
                   L   ++IYN  +    ++ + +EA + L EM+  NL+P  D Y  +I    +
Sbjct: 572 ------LQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCR 625

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            KM  E    +  M   G  P   +Y  +I      G ++  +  +  ML+K  +     
Sbjct: 626 LKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIA 685

Query: 282 MVAILDAYMNFG 293
              ++D  +  G
Sbjct: 686 WRILIDGLLQKG 697


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 132/319 (41%), Gaps = 15/319 (4%)

Query: 124 QVFDMWKNIEKSRINEFNSQK--------------IIGMLCEEGLMEEAVRAFQEMEGFA 169
           ++   WK+ ++ + N+  +Q               +I   C+   +EE+   +++M    
Sbjct: 292 EILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNG 351

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P +   +SI++G+ + GK  EA +   EM EM L P   +Y  +I +  K     E  
Sbjct: 352 IMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAF 411

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M + G S D +T   ++      G  K  E  ++++L   +     T  A+LD Y
Sbjct: 412 NLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGY 471

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTE 348
              G ++  E   +++     P        +   Y K  M S+  D+  ++  R +    
Sbjct: 472 CKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNT 531

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           +V+ + +  +         D   +EM+S ++  +    +I+L    ++      R L+ +
Sbjct: 532 IVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIID 591

Query: 409 LPTRHVKPDIVTIGILYDA 427
           + ++ + PDIV    L D 
Sbjct: 592 MYSKGIDPDIVNYASLIDG 610



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 127 DMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D  K ++  R+ E N     ++  L   G M+EA     +M    + P +  Y S+I GY
Sbjct: 552 DFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGY 611

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G    AL  + EMKE N+      Y+ LI+   +   YD   +C +M++L G +PD 
Sbjct: 612 FKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIEL-GLAPDC 670

Query: 245 ITYNLLIQEFACAG 258
           ITYN +I  +   G
Sbjct: 671 ITYNTIINTYCIKG 684



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 14/248 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G ME A    Q+ME   + P++  ++SII+GY+K G  ++A+  L EM + N+ P +
Sbjct: 472 CKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNT 531

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  LI  Y K    D  D   K MK       ++ +++L+      G +         
Sbjct: 532 IVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIID 591

Query: 270 MLTKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRTPLKEDLVRKLAEV-- 323
           M +K +        +++D Y   G     L  +++  ++ +         L++ L  +  
Sbjct: 592 MYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK 651

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y   Y+ SR+ +LG         T +  +C++  +   L        ++ EM+S  +  N
Sbjct: 652 YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDAL-------DILNEMKSYGIMPN 704

Query: 383 VTTANIIL 390
             T NI++
Sbjct: 705 AVTYNILI 712



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL----FLNEMKEMNL 205
           C    +E+A++ + +M    + P++  YN+++ G S  G   E +      ++EM E  L
Sbjct: 787 CTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGL 846

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P + TYD L+  YG+     +  +    M   G  P   TYN+LI ++A +G +     
Sbjct: 847 VPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARE 906

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
               +LTK     S T   +   ++N     ++++  KR
Sbjct: 907 LLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKR 945



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 126/310 (40%), Gaps = 44/310 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-------FNEALLFL----- 197
           CE  LM +A    +      +K  +  YN+++  + K G        FNE L F      
Sbjct: 243 CEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDR 302

Query: 198 ---------NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                    NE+K  NL P   TY  LI AY K+   +E     K M ++G  PD +T +
Sbjct: 303 LKNNDVVTQNEIK--NLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCS 360

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            ++  F   G L      ++ M    +     +   I+++    G +  ME F     N 
Sbjct: 361 SILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRV--MEAF-----NL 413

Query: 309 RTPLKEDLVRKLA-EVYIKNYMFSRLDDLG-----DDLASRIGRTELVW-CLR---LLSH 358
           ++ +   +VR ++ ++     +   L  +G     +++   I +  L   C+    LL  
Sbjct: 414 QSQM---VVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDG 470

Query: 359 ACLLSHRGI-DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C L    + + V+++ME   V  NV T + I+  Y K         +L E+  R+V P+
Sbjct: 471 YCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPN 530

Query: 418 IVTIGILYDA 427
            +   IL D 
Sbjct: 531 TIVYAILIDG 540



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 118/296 (39%), Gaps = 25/296 (8%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F  M    L P+L  +N++++ ++  G  ++  L  ++M    + P   + + L+ 
Sbjct: 78  ASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVH 137

Query: 218 AYGKYKMYDEIDMCLKMMKL-DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
           +  K     ++D+ L  ++  D    D++TYN +I  F   GL+ +  G    M+ + + 
Sbjct: 138 SLCKV---GDLDLALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLC 194

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
             S T   ++  Y   G++   E     L++         +  L + Y +  + S+  +L
Sbjct: 195 FDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATEL 254

Query: 337 GDDLASRIGRTELVWCLRLLSHAC----LLSHRGI----------------DSVVREMES 376
            ++      + ++V    LL   C    L     +                + VV + E 
Sbjct: 255 IENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEI 314

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-GILYDARRIG 431
             ++  + T   ++ AY K    +    L  ++    + PD+VT   ILY   R G
Sbjct: 315 KNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHG 370



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II    ++G++ +AV   +EM    + P+  +Y  +I GY K G+ + A  F 
Sbjct: 495 NVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFC 554

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            EMK   L   +  +D L+    +    DE    +  M   G  PD + Y  LI  +
Sbjct: 555 KEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGY 611



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAV----RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           I  +N+  ++G L   GLMEE +    +   EM    L P+   Y+ ++ GY ++G   +
Sbjct: 811 ITTYNT--LLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK 868

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            ++   EM      P   TY+ LI  Y K     E    L  +   G  P+  TY++L
Sbjct: 869 TIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDIL 926


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 158 AVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
            VRA + +E  A++   P L  YNS+++  SK GK+ +A L +  +    + P + TY+ 
Sbjct: 178 TVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNS 237

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           L+ +     ++DE+D  L +MK     P  +TYN+LI      GL++R    +  M+++ 
Sbjct: 238 LLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSEN 297

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                 T   +L A    GM+D+  + +  L +S
Sbjct: 298 CSPDIITYNTLLTALCKEGMVDEALQVFVLLSDS 331



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 58/136 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      ++  LC  GL +E       M+  +  P++  YN +I+G  K G    A+ F 
Sbjct: 231 NAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFF 290

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M   N SP   TY+ L+ A  K  M DE      ++    CSP  ITYN +I      
Sbjct: 291 VQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRR 350

Query: 258 GLLKRMEGTYKSMLTK 273
           G +      Y  M+ K
Sbjct: 351 GYMDEALKLYNQMIEK 366



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ GL+E A+  F +M      P +  YN+++    K G  +EAL     + + N
Sbjct: 273 LINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSN 332

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+ +I    +    DE       M   G +PD IT+  L+  F     ++   
Sbjct: 333 CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAV 392

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M  +   + SS    +++       +D   +  + +++ R    E++   L +  
Sbjct: 393 EILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSV 452

Query: 325 IKNYMFSRLDDLGDDLASR 343
               M    D+L   L  R
Sbjct: 453 ADAGMVEEADELHQKLIER 471



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E  + +I+  LC++G + EA +    M      P+     ++I G  +IG+   A   L
Sbjct: 21  DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             M    L P   TY+ ++  + K + +   ID+ L+ M L GC PD ITYN +I+  
Sbjct: 81  KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDL-LEDMSLSGCPPDVITYNTIIRSL 137



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G  C+   +  A+   ++M      P +  YN+II      GKF++A+ F        
Sbjct: 98  MVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRG 157

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y  LI+   K+         L+ M ++GC PD +TYN L+   +  G  +   
Sbjct: 158 CLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAA 217

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
               ++L+  M   + T  ++L +  + G+ D++++    +  +  P
Sbjct: 218 LIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHP 264



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 63/131 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G M+EA++ + +M    + P    + S++ G+  I +  +A+  L EM + +
Sbjct: 343 VIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRD 402

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
               S  Y  +I    + K  D     L+MM      PD   Y+ LI+  A AG+++  +
Sbjct: 403 HRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEAD 462

Query: 265 GTYKSMLTKRM 275
             ++ ++ +++
Sbjct: 463 ELHQKLIERKV 473



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%)

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +G  ++   E  N I+H   K G   EA   ++ M  +N  P S     LI+   +    
Sbjct: 14  DGPLVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRI 73

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           +     LK M + G  PD ITYN+++  F 
Sbjct: 74  ERASRVLKTMVMSGLVPDVITYNMMVGGFC 103


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 79/150 (52%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++G   + GL+EEA+  F ++E      +++IY ++I+G  K GK ++A    
Sbjct: 422 NLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATF 481

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++  + L P   TY  +I  Y +  + DE    L+ M+ +GC PD+ TYN++++ F  +
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRS 541

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
             +  M+   K +  K     ++T+  ++D
Sbjct: 542 SKVSEMKAFLKEIAGKSFSFEAATVELLMD 571



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 23/302 (7%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +IR L   ++ +    +F           +E     ++  LC++G  ++A    + M
Sbjct: 145 FTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLM 204

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E    KP   IYN +I  + K G  + A   LNEMK+ N+ P   TY  LI   GK   +
Sbjct: 205 EQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQW 264

Query: 226 DEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +++  + L+M+ L+   PD  T+N +I      G ++  E     M+ K +     T   
Sbjct: 265 EKVRTLFLEMIHLN-IYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNV 323

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV--YIKNYMFSRLDDLGDDLAS 342
           ++D Y   G + +  + +  +++    ++ D++   A +  Y++     +   L  +++ 
Sbjct: 324 VMDGYCLRGQMGRARRIFDSMIDKG--IEPDIISYTALINGYVEKKKMDKAMQLFREISQ 381

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVR---------EMESAKVRWNVTTANIILLAY 393
              +  +V C  LL        RG+  V R         EM++A    N+ T   +L  Y
Sbjct: 382 NGLKPSIVTCSVLL--------RGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGY 433

Query: 394 LK 395
            K
Sbjct: 434 FK 435



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 164/404 (40%), Gaps = 43/404 (10%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNA--LIQRLNKKVSC-PLQILQH---DGDWTKDHFWA 108
            + Y+    TTL+   + E++  +A  L ++L ++  C P +++     DG   K H   
Sbjct: 137 GIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQK 196

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
               L+             M + I K     +N   +I   C++G+++ A     EM+  
Sbjct: 197 AFDLLRL------------MEQGITKPDTCIYNI--VIDAFCKDGMLDGATSLLNEMKQK 242

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P +  Y S+I G  K+ ++ +      EM  +N+ P   T++ +I    K    ++ 
Sbjct: 243 NIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDA 302

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +  +  M   G  P+ ITYN+++  +   G + R    + SM+ K +     +  A+++ 
Sbjct: 303 EEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALING 362

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           Y+    +DK  + ++ +  S+  LK  +V         + +   L ++G    ++I   E
Sbjct: 363 YVEKKKMDKAMQLFREI--SQNGLKPSIV-------TCSVLLRGLFEVGRTECAKIFFDE 413

Query: 349 LVWC---LRLLSHACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLKMKD 398
           +        L +H  LL     + +V E       +E  +   N+     ++    K   
Sbjct: 414 MQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGK 473

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
                    +LP   + PD++T    Y A   G+   G L+  K
Sbjct: 474 LDKAHATFEKLPLIGLHPDVIT----YTAMISGYCQEGLLDEAK 513



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 114/291 (39%), Gaps = 9/291 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  +I  LC+EG +E+A      M    ++P+   YN ++ GY   G+   A    + 
Sbjct: 286 FNS--VIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDS 343

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +  + P   +Y  LI  Y + K  D+     + +  +G  P  +T ++L++     G 
Sbjct: 344 MIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGR 403

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
            +  +  +  M          T   +L  Y   G++++    + +L   R      +   
Sbjct: 404 TECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREME 375
           +     KN    +     + L       +++    ++S  C     G+      ++R+ME
Sbjct: 464 VINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYC---QEGLLDEAKDMLRKME 520

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 +  T N+I+  + +      ++  L E+  +    +  T+ +L D
Sbjct: 521 DNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMD 571



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 55/111 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +++A   F+++    L P +  Y ++I GY + G  +EA   L +M++  
Sbjct: 464 VINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             P + TY+ +++ + +     E+   LK +     S +  T  LL+   A
Sbjct: 524 CLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIA 574



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 68/175 (38%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E G  E A   F EM+     P+L  + +++ GY K G   EA+   ++++       
Sbjct: 398 LFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTN 457

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  +I    K    D+     + + L G  PD ITY  +I  +   GLL   +   +
Sbjct: 458 IQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLR 517

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
            M        + T   I+  +     + +M+ F K +       +   V  L ++
Sbjct: 518 KMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDI 572


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 22/249 (8%)

Query: 65  TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+E+Y +    N   A+ +R+ K    P              +  +++     ++ R+
Sbjct: 174 TALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFT----------YQIILKTFVQGNKYRE 223

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLC----EEGLMEEAVRAFQEMEGFALKPSLEIY 177
             ++FD   N E S +     QK+  M+     + G  E+A + F  M    ++ +   Y
Sbjct: 224 AEELFDNLLNDENSPLKP--DQKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTY 281

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS++   S    + E     ++M+  +L P   +Y  L+ AYGK +  +E     + M  
Sbjct: 282 NSLM---SFETDYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLD 338

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G  P    YN+L+  F+ +G++++ +  +KSM   R      +   +L AY+N   ++ 
Sbjct: 339 AGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEG 398

Query: 298 MEKFYKRLL 306
            EKF+KRL+
Sbjct: 399 AEKFFKRLI 407



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  +S  G   +A      M+     P   +Y  +
Sbjct: 327 EEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTM 386

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +  D   P+ +TY  LI+ +A    L+ +   Y+ ML + +
Sbjct: 387 LSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGI 446

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
               + +  I+DAY   G  D    ++K + ++  P
Sbjct: 447 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIP 482



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 73/175 (41%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +E    + +M+   L+P +  Y  ++  Y K  +  EAL    EM +  + P    Y+ L
Sbjct: 292 KEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNIL 351

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + A+    M ++     K M+ D   PD  +Y  ++  +  A  ++  E  +K ++    
Sbjct: 352 LDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDF 411

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
                T   ++  Y     L+ + K Y+ +L       + ++  + + Y K+  F
Sbjct: 412 EPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDF 466



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 38/253 (15%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L  M +    P   +   L++AYGK   Y+  +   + M+  G
Sbjct: 141 LITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWG 200

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P   TY ++++ F      +  E  + ++L                            
Sbjct: 201 PEPSAFTYQIILKTFVQGNKYREAEELFDNLLN--------------------------- 233

Query: 300 KFYKRLLNSRTPLKED--LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                  +  +PLK D  +   +  +Y K   + +       +A R  +   V    L+S
Sbjct: 234 -------DENSPLKPDQKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMS 286

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
                 ++ + ++  +M+ A +R +V +  +++ AY K +  +    +  E+    V+P 
Sbjct: 287 FET--DYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPT 344

Query: 418 IVTIGILYDARRI 430
                IL DA  I
Sbjct: 345 RKAYNILLDAFSI 357



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 140/357 (39%), Gaps = 59/357 (16%)

Query: 135 SRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
            ++ +FN ++K++G++ + G +                P++    +++  Y K G++N A
Sbjct: 146 GKLGDFNGAEKVLGLMNKNGYV----------------PNVVSQTALMEAYGKGGRYNNA 189

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS---PDHITYNLL 250
                 M++    P + TY  +++ + +   Y E +     +  D  S   PD   +N++
Sbjct: 190 EAIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMM 249

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--- 307
           I  +  AG  ++   T+  M  + +   + T     ++ M+F      E  YK + N   
Sbjct: 250 IYMYKKAGSYEKARKTFALMAERGIQQTTVT----YNSLMSF------ETDYKEVSNIYD 299

Query: 308 --SRTPLKEDLVRK--LAEVYIKN-------YMFSRLDDLGDDLASRIGRTELVWCLRLL 356
              R  L+ D+V    L   Y K         +F  + D G     R  R      L   
Sbjct: 300 QMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAG----VRPTRKAYNILLDAF 355

Query: 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
           S + ++      +V + M   +   ++ +   +L AY+   D +        L     +P
Sbjct: 356 SISGMVEQ--AQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEP 413

Query: 417 DIVTIGILYDARRIGFDGTGALEMW--KRIGFLFKTVEINTDPL--VLAVYGK-GHF 468
           ++VT G L      G+     LEM   K    L + ++ N   L  ++  YGK G F
Sbjct: 414 NVVTYGTLIK----GYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDF 466



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A + F+ +     +P++  Y ++I GY+KI      +    EM    +         
Sbjct: 396 MEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTT 455

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++ AYGK   +D      K M+ +G  PD    N+L+
Sbjct: 456 IMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLL 492


>gi|414871052|tpg|DAA49609.1| TPA: hypothetical protein ZEAMMB73_878928 [Zea mays]
          Length = 807

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 130/309 (42%), Gaps = 33/309 (10%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  ++  LC  G +++A   F  M  + L PS   Y++IIHG  K+G  NEA      
Sbjct: 253 FNT--LMSALCNWGFIQDAKSVFCLMLKYGLNPSRHTYSTIIHGLCKVGSVNEAFDIFQS 310

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           + E  +     T + LI  +  +    EI   ++MM+  G  PD +TY +LI      G 
Sbjct: 311 VTEEGMELDIVTCNSLINGFRLHGHTREIPKMIEMMRGLGVEPDVVTYTILITGHCEGGD 370

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           ++      K +L + + L   T   +++A    G+  ++E  +  + +    L+ D++  
Sbjct: 371 VEEGMRIRKDILGQGIELNIVTYSVLINALFKKGLFYEVENLFGEICS--IGLELDVI-- 426

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL------------LSHRG- 366
                I  + F +L +        IGR   VW L   S   +            L  +G 
Sbjct: 427 --AYSILIHGFCKLGE--------IGRALQVWNLMCCSQRVIPTSVNHVSILLGLCKKGF 476

Query: 367 IDSVVREMESAKVRW---NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-G 422
           +D     +E+   ++   +V   N+++  Y K+ D  +   L   +    + P IVT   
Sbjct: 477 LDEARSYLETVASKYQPSDVVLYNVVIDGYAKVGDIGNAVQLYDAIIMAGMCPTIVTCNS 536

Query: 423 ILYDARRIG 431
           +LY   + G
Sbjct: 537 LLYGYCKFG 545



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E G +   +  F+EM G  ++P+   Y+ +I G  K   F++A   L++M        
Sbjct: 576 LSEAGKVHSMLSIFKEMTGKGIRPNAITYSVVIKGLCKQLMFHDAKNVLDDMYREGFDAD 635

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ LIQ + + +         ++M   G  P  +TYNLL+      GL+   E   +
Sbjct: 636 PIPYNTLIQGFCETQDAKNAFYVYELMVCRGVMPSPVTYNLLVNVLCLKGLVIHAEMKLE 695

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           S   +   LR      ++ A    GM  K   +  +LL++
Sbjct: 696 SFRKQGAELRKFAYTTLIKAQCAKGMPYKAIMWVGKLLDA 735



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIH 182
           QV+++    ++      N   I+  LC++G ++EA R++ E      +PS + +YN +I 
Sbjct: 446 QVWNLMCCSQRVIPTSVNHVSILLGLCKKGFLDEA-RSYLETVASKYQPSDVVLYNVVID 504

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY+K+G    A+   + +    + P   T + L+  Y K+      +     ++L    P
Sbjct: 505 GYAKVGDIGNAVQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFMAIQLSDLLP 564

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +TY  L+   + AG +  M   +K M  K +   + T   ++
Sbjct: 565 TTVTYTTLMDALSEAGKVHSMLSIFKEMTGKGIRPNAITYSVVI 608



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLI 216
           A+  F+EME   + PS   +  +I G  K GK  EAL FL E  KE    P   T++ L+
Sbjct: 198 ALAIFKEMESCGIPPSDYSHGILIDGLCKQGKIGEALSFLQETRKEGKFKPLGMTFNTLM 257

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A   +    +      +M   G +P   TY+ +I      G +      ++S+  + M 
Sbjct: 258 SALCNWGFIQDAKSVFCLMLKYGLNPSRHTYSTIIHGLCKVGSVNEAFDIFQSVTEEGME 317

Query: 277 LRSSTMVAILDAYMNFG-------MLDKMEKF--------YKRLLNSRTP---------L 312
           L   T  ++++ +   G       M++ M           Y  L+              +
Sbjct: 318 LDIVTCNSLINGFRLHGHTREIPKMIEMMRGLGVEPDVVTYTILITGHCEGGDVEEGMRI 377

Query: 313 KEDLVRKLAEVYIKNY-----------MFSRLDDLGDDLASRIGRTELVWCLRLLSHA-C 360
           ++D++ +  E+ I  Y           +F  +++L  ++ S IG    V    +L H  C
Sbjct: 378 RKDILGQGIELNIVTYSVLINALFKKGLFYEVENLFGEICS-IGLELDVIAYSILIHGFC 436

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTAN--IILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
            L   G    V  +     R   T+ N   ILL   K       R  L  + +++   D+
Sbjct: 437 KLGEIGRALQVWNLMCCSQRVIPTSVNHVSILLGLCKKGFLDEARSYLETVASKYQPSDV 496

Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
           V   ++ D      D   A++++  I        I T   +L  Y K   L   E  + +
Sbjct: 497 VLYNVVIDGYAKVGDIGNAVQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFMA 556

Query: 479 LEPYSREKKRWTYQNLID 496
           ++         TY  L+D
Sbjct: 557 IQLSDLLPTTVTYTTLMD 574



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F  ++   L P+   Y +++   S+ GK +  L    EM    + P +
Sbjct: 542 CKFGDLHMAESYFMAIQLSDLLPTTVTYTTLMDALSEAGKVHSMLSIFKEMTGKGIRPNA 601

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            TY  +I+   K  M+ +    L  M  +G   D I YN LIQ F
Sbjct: 602 ITYSVVIKGLCKQLMFHDAKNVLDDMYREGFDADPIPYNTLIQGF 646



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  AV+ +  +    + P++   NS+++GY K G  + A  +   ++  +L P + TY
Sbjct: 510 GDIGNAVQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFMAIQLSDLLPTTVTY 569

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             L+ A  +      +    K M   G  P+ ITY+++I+     GL K++
Sbjct: 570 TTLMDALSEAGKVHSMLSIFKEMTGKGIRPNAITYSVVIK-----GLCKQL 615


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 117 SRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R +QI  + D+++ +++     + F    +I      G ++ AV+ F+E+E    KP +
Sbjct: 449 GRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDV 508

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YNS+I+   K G  +EA +   EM+E  L+P   TY  LI+ +GK    D+++M  ++
Sbjct: 509 ISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKT---DKVEMACRL 565

Query: 235 ---MKLDGCSPDHITYNLLI 251
              M  + C+P+ ITYN+L+
Sbjct: 566 FDEMLAEECTPNLITYNILL 585



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 59/133 (44%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
            D   +I K  IN+      +  L + G   EA R F  M  F  K   +   S++    
Sbjct: 355 LDNIVDISKKYINKQIYAYFVRTLSKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLC 414

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             GK  EA+  LN++ E  ++  +  Y+ +  A G+ K    I    + MK DG  PD  
Sbjct: 415 SAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIF 474

Query: 246 TYNLLIQEFACAG 258
           TYN+LI  F  AG
Sbjct: 475 TYNILISSFGRAG 487



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I  + + G+ + A+ F  E++  +  P   +Y+ LI   GK
Sbjct: 461 YEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGK 520

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               DE  M  K M+  G +PD +TY+ LI+ F 
Sbjct: 521 NGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFG 554



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 25/278 (8%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A R + +M     +  +  YN ++   +K  K     +F  +MK  +  P   TY  +I+
Sbjct: 216 AFRVYLDMIRHGYRLDIFGYNMLLDALAKDEKVCSYKVF-EDMKRRHCEPDVFTYTIMIR 274

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             GK    DE     + M   GC+P+ I YN +I+  A   ++ +    +  M+   +  
Sbjct: 275 MTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQP 334

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFY---KRLLNSRTPLKEDLVRKLAEV---YIKNYMFS 331
              T   IL+  +  G L+K++      K+ +N +  +    VR L++V      + +F 
Sbjct: 335 NEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQ--IYAYFVRTLSKVGHASEAHRLFC 392

Query: 332 RL---DDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTA 386
            +    D GD  A          C+ +L   C        ID ++ ++    +  +    
Sbjct: 393 NMWNFHDKGDKDA----------CMSMLESLCSAGKMTEAID-LLNKIHEKGITTDTIMY 441

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           N +  A  ++K   H+  L  ++      PDI T  IL
Sbjct: 442 NTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNIL 479



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 6/191 (3%)

Query: 110 IRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +R L     + +  ++F +MW   +K   ++     ++  LC  G M EA+    ++   
Sbjct: 375 VRTLSKVGHASEAHRLFCNMWNFHDKG--DKDACMSMLESLCSAGKMTEAIDLLNKIHEK 432

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +     +YN++     ++ + +       +MK+    P   TY+ LI ++G+    D  
Sbjct: 433 GITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIA 492

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
               + ++   C PD I+YN LI      G +      +K M  K ++    T   +++ 
Sbjct: 493 VKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIEC 552

Query: 289 YMNFGMLDKME 299
              FG  DK+E
Sbjct: 553 ---FGKTDKVE 560



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I M  +    +EA+  FQ M      P+L  YN++I   +K    ++A+L  ++
Sbjct: 267 FTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSK 326

Query: 200 MKEMNLSPQSDTYD---GLIQAYGKYKMYDEI 228
           M E ++ P   TY     L+ A GK    D I
Sbjct: 327 MVENDIQPNEFTYSVILNLLVAEGKLNKLDNI 358


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 122/311 (39%), Gaps = 45/311 (14%)

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           E    ++I  LC  G+++EA + F+EM      PS E++N++IH   K  +  + +L   
Sbjct: 266 EEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQ 325

Query: 199 EMKEMN---LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            MK M      P  +TY+ ++    K K  DE    +  M   G SPD +TY+ L+    
Sbjct: 326 RMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC 385

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G L R     + M  + +   S T  +IL+A    G +D                   
Sbjct: 386 KLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD------------------- 426

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---R 372
                       Y  S L    + + +R    +LV    LL   C      ID  +    
Sbjct: 427 ------------YALSHL----ETMKARGSTPDLVTYNTLLDGLCKAGR--IDEAITFLA 468

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
           +M +AK   +V +  II+ A  +         +  E+  R V PD V    L D   R G
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528

Query: 432 FDGTGALEMWK 442
            +   ALE+ K
Sbjct: 529 LEDL-ALELLK 538



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 133/356 (37%), Gaps = 53/356 (14%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGML 149
            Q +Q  G    D  ++++  L+   ++ ++ +  ++   + +S  ++N      +I   
Sbjct: 61  FQQMQRRGYPPDDFTYSIV--LRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGC 118

Query: 150 CEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           C+   +++A+  F+ M  G    P +  +NS++ G     + +EA +    M +    P 
Sbjct: 119 CKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             +Y  L+    K    DE     + M    C PD + Y   +     A  +       +
Sbjct: 179 VISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCR 238

Query: 269 SMLTKRMHLRS---STMVAIL--------------DAYMNFGMLDKMEKFYKRLLNSRTP 311
            M+TK     +   ST++ IL              +     GMLD+  K ++ +++   P
Sbjct: 239 KMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHP 298

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
              +L   L     K+    RL D                         LL  R     +
Sbjct: 299 PSAELFNTLIHAVCKS---KRLPD-----------------------GVLLFQR-----M 327

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + M+      N+ T NI++    K K     + L++E+    + PD+VT   L D 
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 34/215 (15%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           ++ +  D+ + + K  +  + F    I+  L + G ++ A+   + M+     P L  YN
Sbjct: 389 KLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYN 448

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI-------QAYGKYKMYDEI--- 228
           +++ G  K G+ +EA+ FL +M     +P   +Y  +I       QA G + ++ E+   
Sbjct: 449 TLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508

Query: 229 ----------------------DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
                                 D+ L+++K   C PD + + +++     AG  +     
Sbjct: 509 GVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEV 568

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
            + M        + T ++++      G +DK  + 
Sbjct: 569 VERMADAGFPADAFTYISVVSGLRKLGKVDKARQL 603



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  V   L++  +   I ++FD     +  + + F     +  L +    + A   FQ+M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KM 224
           +     P    Y+ ++ G  K G+ ++A   L +++E  +     TY  +I    K  ++
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT---YKSMLTKRMHLRSST 281
            D +++   M    GC PD +T+N L++   C+G  +RM      ++ M          +
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGL-CSG--ERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLL 306
              +LD     G LD+  + ++ ++
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMV 206


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    +++AV+ F+ M    ++PS+  +N +I GY K GK   AL F N+MK   
Sbjct: 149 LIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAG 208

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L P   TY+ LI  + + +           MK  G +P  +TY +LI  FA
Sbjct: 209 LPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFA 259



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 133/333 (39%), Gaps = 9/333 (2%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           AV+R L  ++  R    V         + ++      ++ + C+ G + EA R F  M  
Sbjct: 7   AVVRRLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPR 66

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P+   Y ++I+GY   G          EM+   + P   TY+ LI  + +   +  
Sbjct: 67  LGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKS 126

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--TMVAI 285
             +    M + G   + ++YN+LI        LK     +++M  +R  +R S  T   +
Sbjct: 127 ARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAM--RREGIRPSIVTFNLL 184

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-I 344
           +D Y   G +     F+ ++  +  P       +L   + +    +R      D+  R +
Sbjct: 185 IDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGL 244

Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
             T++ + + + + A          ++ EME A +  +V +  ++L A        H R 
Sbjct: 245 APTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARK 304

Query: 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
           L   +  + VKP+     +LYD    G+   G+
Sbjct: 305 LFQSMDLKGVKPN----SVLYDMMIYGYGREGS 333



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++  ++ + F M   +EK+ + E + Q    ++  LC EG M  A + FQ M+   +KP+
Sbjct: 259 AKENEMDRAFMMLSEMEKAGL-EVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPN 317

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             +Y+ +I+GY + G   +AL  + EM++  L P   +Y
Sbjct: 318 SVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASY 356


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 7/269 (2%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N      II   C+ G ME A    +EME   +   +++Y+S++HGY+ I   N+ L
Sbjct: 365 SSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCL 424

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +    +KE    P   +Y  L+  Y K     +     K M+  G   ++ TY++LI  F
Sbjct: 425 VVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGF 484

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                       ++ ML   +    +    +++A+   G +D+     +++   R     
Sbjct: 485 IHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSN 544

Query: 315 DLVRKLAEVY-IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSV 370
              R + E Y +   M S LD L  DL  R G    V     L H  +  H   R + SV
Sbjct: 545 RAFRPIIEGYAVAGDMKSALDTL--DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV-SV 601

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDF 399
           + +M  A +  N  T  II+  Y    D 
Sbjct: 602 LDKMSIAGITPNEHTYTIIMRGYAASGDI 630



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I      G + EA    ++M+   + P++  Y S I+   K G    A   +
Sbjct: 683 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 742

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM ++ L P   TY  LI+ + +  + D    C + MKL G  PD  +Y+ L+      
Sbjct: 743 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV-----T 797

Query: 258 GLLKR---MEG-TYKSMLT 272
            LL R   MEG TY  +++
Sbjct: 798 SLLSRATVMEGSTYTGIIS 816



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 78  NALIQRLNKK--VSCPLQILQH---DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI 132
           NALI  L +K  V   + +L      G    +H + +I  ++  + S  I + F+ +  I
Sbjct: 583 NALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII--MRGYAASGDIGKAFEYFTKI 640

Query: 133 EKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           ++S  +++ +  + ++   C+ G M+ A+   +EM    +  +  IYN +I G+++ G  
Sbjct: 641 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 700

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            EA   + +MKE  + P   TY   I A  K       +  ++ M   G  P+  TY  L
Sbjct: 701 WEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTL 760

Query: 251 IQEFACAGLLKRMEGTYKSM 270
           I+ +A   L  R    ++ M
Sbjct: 761 IKGWARVSLPDRALKCFEEM 780



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 120/318 (37%), Gaps = 50/318 (15%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           SR      V   ++ I K    EF    +I    + G    A   F+ M    ++P+  +
Sbjct: 244 SRPDNWQAVVSAFERIPKPSRREFGL--MIVYYAKRGDKHHARATFENMRARGIEPNAFV 301

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           + S++H Y+       AL  + EMK   L     TY  LI  + K       D   K  K
Sbjct: 302 FTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAK 361

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
               S + I Y+ +I     +G ++R E   + M           + A +D Y +     
Sbjct: 362 TKLSSLNGIIYSNIIHAHCQSGNMERAEELVREM-------EEDGIDAPIDVYHS----- 409

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
            M   Y  + N    L                +F RL + G             +   ++
Sbjct: 410 -MMHGYTIIQNENKCL---------------VVFERLKECG-------------FKPSII 440

Query: 357 SHACLLS-HRGID------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           S+ CLL+ +  I       S+ +EMES  ++ N  T ++++  ++ + DF +   +  E+
Sbjct: 441 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 500

Query: 410 PTRHVKPDIVTIGILYDA 427
               ++PD     +L +A
Sbjct: 501 LRSGLQPDRAIYNLLIEA 518



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     I+      G + +A   F +++   LK  + IY +++    K G+   AL   
Sbjct: 613 NEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVT 672

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    +   +  Y+ LI  + +     E +  +K MK DG  P+  TY   I     A
Sbjct: 673 REMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKA 732

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G ++R E   + M+   +     T   ++  +    + D+  K ++ +
Sbjct: 733 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 780


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 1/192 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R F++M+   + P +  YN++I+GY ++ K  EA  +  EMK  N+ P   TY
Sbjct: 164 GKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTY 223

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ Y      D+    ++ MK  G  P+ ITY+ L+     AG +       K M+ 
Sbjct: 224 TTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMD 283

Query: 273 KRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           K +    +S  + ++ +  N G LD      K ++    P +      L E + K   + 
Sbjct: 284 KYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYD 343

Query: 332 RLDDLGDDLASR 343
           +   L D L  +
Sbjct: 344 QAVKLLDKLIEK 355



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 73/152 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG+++E+V+ FQ+ME   ++ +++ YN++     + G++  A  + N+M    
Sbjct: 86  MIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSEG 145

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ +I  +      +  +   + MK    SPD +TYN +I  +     ++  E
Sbjct: 146 IEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAE 205

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             +  M  + +     T   ++  Y++   +D
Sbjct: 206 KYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 5/190 (2%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           S+++ +    F  W  +E+S + E N +   KII +L     +  A     +M    L+ 
Sbjct: 21  SAKTSEHALQFFRW--VERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEW 78

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
             +++  +I  Y K G   E++    +M+E+ +     +Y+ L +A  +   Y       
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYF 138

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M  +G  P   T+N++I  F  +G ++     ++ M ++ +     T   +++ Y   
Sbjct: 139 NKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 293 GMLDKMEKFY 302
             +++ EK++
Sbjct: 199 KKMEEAEKYF 208


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +QI  + D+++ ++K   +   F    +I      G ++EA+  F+E+E    KP +  Y
Sbjct: 456 KQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISY 515

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS+I+   K G  +EA +   EM+E  L+P   TY  L++ +GK +  +      + M +
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV 575

Query: 238 DGCSPDHITYNLLI 251
            GC P+ +TYN+L+
Sbjct: 576 KGCQPNIVTYNILL 589



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR   + FD++  I +   +++ F    ++  L ++   E+A + F++M+    +    
Sbjct: 215 RSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEY 271

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    +IGK +EA+   NEM    L+     Y+ L+Q   K KM D+       M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
              GC P+  TY+LL+      G L R++G 
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGV 362



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F++M+     P +  YN +I  + ++G+ +EA+    E++  +  P   +Y+ LI   GK
Sbjct: 465 FEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGK 524

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLR 278
               DE  +  K M+  G +PD +TY+ L++   C G  +R+E  Y   + ML K     
Sbjct: 525 NGDVDEAHVRFKEMQEKGLNPDVVTYSTLME---CFGKTERVEMAYSLFEEMLVKGCQPN 581

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRL 305
             T   +LD     G   +    Y ++
Sbjct: 582 IVTYNILLDCLEKNGRTAEAVDLYSKM 608



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G + EA R F +M  F +K   + Y S++      GK  EA+  L+++ E  
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +   +  Y+ +  A GK K    I    + MK DG SPD  TYN+LI  F   G
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 5/176 (2%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DMW    K   + + S  ++  LC  G   EA+    ++    +     +YN++     K
Sbjct: 397 DMWSFPVKGERDSYMS--MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGK 454

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
           + + +       +MK+   SP   TY+ LI ++G+    DE     + ++   C PD I+
Sbjct: 455 LKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIIS 514

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           YN LI      G +      +K M  K ++    T   +++    FG  +++E  Y
Sbjct: 515 YNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMEC---FGKTERVEMAY 567


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 5/277 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++  + EA+  F  M+   + P++  YNS+I G     ++ EA   LNEM  +N
Sbjct: 268 IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 327

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+  LI  + K     E    LK M   G  P+ +TY+ L+  ++    +    
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
             +  M+TK       +   +++ Y     + + ++ +  +++    L  D+V    L +
Sbjct: 388 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ--GLTPDIVSYNTLID 445

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRW 381
              +        DL  ++ +     +L     LL   C   +      + R M+S  ++ 
Sbjct: 446 GLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 505

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           N+   NI++ A  K ++ K  R L SEL  + ++P++
Sbjct: 506 NMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNV 542



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 7/280 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I + C+EG + EA    + M    ++P++  Y+S+++GYS   +  EA    + M    
Sbjct: 338 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKG 397

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ LI  Y K K   E       M   G +PD ++YN LI      G L+   
Sbjct: 398 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 457

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
             +K+MLT        T   +LD +   G L K  + ++ +    T LK ++V    L +
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM--QSTYLKPNMVMYNILID 515

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVR 380
              K+        L  +L  +  +  +     +++  C   L    +++  R ME     
Sbjct: 516 AMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEA-FRNMEEDGCP 574

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            N  + N+I+  +L+ KD      L+ E+  +    D+ T
Sbjct: 575 PNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 6/363 (1%)

Query: 69  ESYHEHQALNAL--IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           ++Y  H  +N    +QR++   S   +I++     T   F  +I  L    +  Q  ++F
Sbjct: 156 DTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELF 215

Query: 127 D-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           D M     +  ++ + +  II  LC+ G    A   F++M     +P +  Y++II    
Sbjct: 216 DDMVARGYQPDVHTYTT--IINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC 273

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K  + NEAL   + MK   +SP   TY+ LIQ    +  + E    L  M      P+ +
Sbjct: 274 KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 333

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T++LLI  F   G +    G  K+M    +     T  ++++ Y     + +  K +  +
Sbjct: 334 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVM 393

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH- 364
           +             L   Y K         L +++  +    ++V    L+   C L   
Sbjct: 394 ITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 453

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           R    + + M +     ++ T +I+L  + K         L   + + ++KP++V   IL
Sbjct: 454 REAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNIL 513

Query: 425 YDA 427
            DA
Sbjct: 514 IDA 516



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 2/176 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLN 198
           F+   +I   C+   + EA + F EM    L P +  YN++I G  ++G+  EA  LF N
Sbjct: 403 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 462

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            +   NL P   TY  L+  + K     +     + M+     P+ + YN+LI     + 
Sbjct: 463 MLTNGNL-PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSR 521

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            LK     +  +  + +         I++     G+LD+  + ++ +     P  E
Sbjct: 522 NLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNE 577


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 119/258 (46%), Gaps = 13/258 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++ L+ EA+  F E++G  ++P +  Y+ ++HG     +  EA    NEM  +N
Sbjct: 230 IIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLN 289

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ L+    K  M  E    +K+M   G  P++ TYN L+  +     +    
Sbjct: 290 IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEAR 349

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK----RLLNSRTPLKEDLVRKL 320
             + +M+TK       +   +++ Y     +D+  + +     R L   T     L+  L
Sbjct: 350 MVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGL 409

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESA 377
            +     +  +R  +L  D+ ++    +LV C  LL   C L +  +D+ +   R M+ +
Sbjct: 410 CQA--GRHCEAR--ELFKDMQAQGCSPDLVTCTILLDSLCKLGY--LDNALRLFRAMQDS 463

Query: 378 KVRWNVTTANIILLAYLK 395
            ++ N+ T +I++ A  K
Sbjct: 464 CLKPNLVTYDILIRAMYK 481



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 137/333 (41%), Gaps = 12/333 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC E     A+  F EM     +P+L  YN+II G+ KIGK   A+  L +M +  
Sbjct: 160 LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG 219

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ +I    K ++  E       +K  G  PD  TY++L+     +   +   
Sbjct: 220 GRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEAS 279

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M++  +     T   ++D     GML + +   K ++             L   Y
Sbjct: 280 ALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGY 339

Query: 325 -IKNYMF-SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKV 379
            ++N +F +R+  + D + ++     +V    L++  C    + ID    +  EM    +
Sbjct: 340 CLQNKVFEARM--VFDAMITKGCMPNVVSYNILINGYC--KAQRIDEARELFDEMSFRGL 395

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGFDGTGAL 438
             N    N ++    +       R L  ++  +   PD+VT  IL D+  ++G+    AL
Sbjct: 396 IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDN-AL 454

Query: 439 EMWKRI-GFLFKTVEINTDPLVLAVYGKGHFLR 470
            +++ +     K   +  D L+ A+Y  G   R
Sbjct: 455 RLFRAMQDSCLKPNLVTYDILIRAMYKSGKIYR 487



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 143/349 (40%), Gaps = 4/349 (1%)

Query: 81  IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINE 139
           +QR++   S   +I++   +     F ++I  L    +  +  + FD M  +  +  ++ 
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHT 191

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +N+  II   C+ G    AV   ++M+    +P + IYN+II G  K    +EAL   +E
Sbjct: 192 YNT--IIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSE 249

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +K   + P   TY  L+         +E       M      PD +T+N+L+ +    G+
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L   +G  K M+ K +    +T  ++++ Y     + +    +  ++             
Sbjct: 310 LSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNI 369

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVVREMESAK 378
           L   Y K        +L D+++ R           L+S  C    H     + ++M++  
Sbjct: 370 LINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG 429

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
              ++ T  I+L +  K+    +   L   +    +KP++VT  IL  A
Sbjct: 430 CSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRA 478



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N FN   +I  LC+ G   EA   F++M+     P L     ++    K+G  + AL   
Sbjct: 398 NTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLF 457

Query: 198 NEMKEMNLSPQSDTYDGLIQA-YGKYKMY 225
             M++  L P   TYD LI+A Y   K+Y
Sbjct: 458 RAMQDSCLKPNLVTYDILIRAMYKSGKIY 486



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R +    V  + K IE  RI    F+   +I        ++ A     ++     +P   
Sbjct: 96  RIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAV 155

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            ++S+I+G     KF  A+ F +EM      P   TY+ +I+ + K          LK M
Sbjct: 156 TFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKM 215

Query: 236 KLDGCSPDHITYNLLI 251
              G  PD + YN +I
Sbjct: 216 DKAGGRPDIVIYNTII 231


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC+EG + E    F+ M     KP++ IY  +I GY+K G   +A+  L+ M +  
Sbjct: 333 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEG 392

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  ++    K    +E     +  + +G + + + Y+ LI     AG +   E
Sbjct: 393 FNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAE 452

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++ M  K     S    A++DA+   G +D+    +KR+
Sbjct: 453 RLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRM 493



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 56/126 (44%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            E+  F    ++   NS+I  + K+G   E L    +MKE  + P   TY+ L+      
Sbjct: 176 SEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
              D  +   ++M+     PD +TYN +I+ +  AG  ++     + M TK +     T 
Sbjct: 236 MFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITY 295

Query: 283 VAILDA 288
           + ++ A
Sbjct: 296 MTMIQA 301



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 37/349 (10%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           +LE Y S++   +     +      +E+++          + LI+++GK  M +E+    
Sbjct: 151 NLECYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVW 210

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + MK +G  P   TYN L+     A  +   E  ++ M + R+     T   ++  Y   
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKA 270

Query: 293 GMLDK-MEKFYKRLLNSRTPLKEDLVR--KLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
           G   K +EK   R++ ++  L+ D +    + +    +  FS    L  ++  +      
Sbjct: 271 GQTQKALEKL--RVMETKG-LEADKITYMTMIQACYADSDFSSCVALYQEMDEK------ 321

Query: 350 VWCLRLLSHACLLSHRGID---------SVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
              L++  HA  L   G+          +V   M     + NV    +++  Y K    +
Sbjct: 322 --GLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVE 379

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
               LL  +      PD+VT  ++ +    G    G +E  + + + F+T   N   +  
Sbjct: 380 DAIRLLHRMIDEGFNPDVVTYSVVVN----GLCKNGRVE--EAMDY-FQTCRFNGLAINS 432

Query: 461 AVY-------GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
             Y       GK   +   E ++  +      +  + Y  LID   KH 
Sbjct: 433 MFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHG 481


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   M++A    ++M    + P+   YN++I+GYS  G++ EA+    EM+  +
Sbjct: 273 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 332

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T   L+ +  KY    E       M + G +PD  +YN+++  +A  G L  M 
Sbjct: 333 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 392

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  ML   +     T   ++ AY N GMLDK
Sbjct: 393 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK 425



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 119/313 (38%), Gaps = 38/313 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G + +    F  M G  + P    +N +I  Y+  G  ++A++  NEM++  + P   T
Sbjct: 385 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 444

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I A  +    D+       M   G +PD   YN LIQ F   G L + +     ++
Sbjct: 445 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 504

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYMF 330
              MHL      +I++     G +   +  +   +N        +   L + Y +   M 
Sbjct: 505 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 564

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-------------HRGID------SVV 371
             L      +++ I    +V+C  L++  C +               RGI       S++
Sbjct: 565 KALRVFDAMVSAGIEPNVVVYC-TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 623

Query: 372 -----------------REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
                             EM  + +  ++ T NI+L    K + F     L  EL   +V
Sbjct: 624 IDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 683

Query: 415 KPDIVTIGILYDA 427
           K +I+T+  + D 
Sbjct: 684 KINIITLNTMIDG 696



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +EAVR F+EM   ++ P +   + ++    K GK  EA    + M     +P   +Y
Sbjct: 316 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 375

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + ++  Y  K  + D  D+   +M  DG +PD  T+N+LI+ +A  G+L +    +  M 
Sbjct: 376 NIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434

Query: 272 TKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLK 313
              +     T   ++ A    G M D MEKF + +     P K
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 477



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 150/381 (39%), Gaps = 35/381 (9%)

Query: 58  YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSS 117
           Y+S  H      +  + +A   L Q +NK+V           +WT ++       +   S
Sbjct: 270 YNSVVHALCKARAMDKAEAF--LRQMVNKRV--------LPNNWTYNNL------IYGYS 313

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            + Q  +   ++K + +  I  +      ++G LC+ G ++EA   F  M      P + 
Sbjct: 314 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 373

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++GY+  G   +     + M    ++P   T++ LI+AY    M D+  +    M
Sbjct: 374 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 433

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  PD +TY  +I      G +      +  M+ + +         ++  +   G L
Sbjct: 434 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 493

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM-FSRLDDLGD--DLASRIG-RTELVW 351
            K ++    ++N+   L  D+V       I N     R+ D  +  DL   +G   + V 
Sbjct: 494 LKAKELISEIMNNGMHL--DIV--FFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 549

Query: 352 CLRLLSHACLLSH-----RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
              L+   CL+       R  D++V    SA +  NV     ++  Y K+        L 
Sbjct: 550 YSMLMDGYCLVGKMEKALRVFDAMV----SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605

Query: 407 SELPTRHVKPDIVTIGILYDA 427
            E+  R +KP  +   I+ D 
Sbjct: 606 REMLQRGIKPSTILYSIIIDG 626



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM-EGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFL 197
           F+   ++  LC++G   +A    + M EG A+  P++  YN++I G+ K G  N+A    
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  + P   TY+ ++ A  K +  D+ +  L+ M      P++ TYN LI  ++  
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315

Query: 258 GLLKRMEGTYKSM 270
           G  K     +K M
Sbjct: 316 GQWKEAVRVFKEM 328



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDG 214
           E A+  F ++    L+ ++ I N ++ G+ +  + +EAL + L+   E+   P   +Y  
Sbjct: 141 ELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 200

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           L+++        + D  L+MM   G  CSP+ + YN +I  F   G + +    +K M+ 
Sbjct: 201 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 260

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           + +     T  +++ A      +DK E F ++++N R 
Sbjct: 261 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 48/116 (41%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+ G + +A   F       L P   +Y+ ++ GY  +GK  +AL   + M  
Sbjct: 516 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 575

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             + P    Y  L+  Y K    DE     + M   G  P  I Y+++I     AG
Sbjct: 576 AGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG 631



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G ++E +  F+EM    +KPS  +Y+ II G  + G+   A +  +EM E  ++   
Sbjct: 593 CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDI 652

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ +++   K + +DE     K ++      + IT N +I        ++  +  + S
Sbjct: 653 CTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFAS 712

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +   R+     T   ++   +  G++++ E  +  + N+
Sbjct: 713 ISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNA 751



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 115/295 (38%), Gaps = 16/295 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N   +  ++   CE    +EA+             P +  Y+ ++      GK  +A 
Sbjct: 156 RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQAD 215

Query: 195 LFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             L  M E     SP    Y+ +I  + K    ++     K M   G  PD +TYN ++ 
Sbjct: 216 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 275

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               A  + + E   + M+ KR+   + T   ++  Y + G   +  + +K +   R  +
Sbjct: 276 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM--RRHSI 333

Query: 313 KEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-----SHACLLSHR 365
             D+V    L     K        D+ D +A + G+   V+   ++     +  CL+   
Sbjct: 334 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK-GQNPDVFSYNIMLNGYATKGCLVD-- 390

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +  +   M    +  +  T N+++ AY          ++ +E+    VKPD+VT
Sbjct: 391 -MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 444



 Score = 38.9 bits (89), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA+  F+E+    +K ++   N++I G  +  +  EA      +    L P   TY  +
Sbjct: 669 DEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIM 728

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME----GTYKSML 271
           I    K  + +E +     M+  GC P+    N +++E     LLK+ E    G Y S +
Sbjct: 729 ITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE-----LLKKNEIVRAGAYLSKI 783

Query: 272 TKR-MHLRSSTMVAILDAYMNFGMLDKMEKF 301
            +R   L   T + ++D + + G   +  +F
Sbjct: 784 DERNFSLEHLTAMLLVDLFSSKGTCREQIRF 814


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  +++EAV  F+EM   ++ P+   YNS+I G  K G+ ++A   +NEM    
Sbjct: 350 MINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRG 409

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY  L+ A  K    D+    +  +K  G  P+  TY +L+      G LK  +
Sbjct: 410 QPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQ 469

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP---LKEDLVRKL 320
             Y+ +L K  HL       +++     G+ D+      ++  N   P     E LVR L
Sbjct: 470 AVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRAL 529

Query: 321 AE 322
            E
Sbjct: 530 FE 531



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + KNI K  +  FN   ++  LC+EG M++A      M    +  ++  YNS++ GY  +
Sbjct: 266 LLKNI-KPDVYTFNI--LVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLV 322

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
            + N+A    N M    ++P   +Y  +I    K KM DE     K M     +P+ +TY
Sbjct: 323 KQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTY 382

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-----TMVAILDAYMNFGMLDK 297
           N LI      GLLK    +    L   MH R       T  ++LDA      +DK
Sbjct: 383 NSLID-----GLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDK 432



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 74/180 (41%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EAV  F +M    +KP +  +N ++ G  K G+  +A   L  M +  +     TY
Sbjct: 253 GRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTY 312

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  Y   K  ++       M   G +PD  +Y+++I       ++      +K M +
Sbjct: 313 NSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHS 372

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           K M   + T  +++D  + +G +         + N   P        L +   KN+   +
Sbjct: 373 KSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDK 432



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 11/289 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC  G + EA+    ++  +GF L      Y ++I+G  K G+   AL  L ++  
Sbjct: 140 LIKGLCLNGKVREALHFHDDVIAKGFHLDQV--SYGTLINGLCKTGETRAALQVLRKIDG 197

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           + + P    Y+ +I +  K K+     D+C +M+ +    PD +TY  LI      G LK
Sbjct: 198 LLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMI-VKRIFPDVVTYTTLIYGCLIVGRLK 256

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
              G +  ML K +     T   ++D     G + K       ++             L 
Sbjct: 257 EAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLM 316

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAK 378
           + Y      ++   + + +A R G T  V    ++ +  L   + +D  V   +EM S  
Sbjct: 317 DGYFLVKQENKATFVFNTMARR-GVTPDVQSYSIMING-LCKTKMVDEAVNLFKEMHSKS 374

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  N  T N ++   LK         L++E+  R    D++T   L DA
Sbjct: 375 MAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDA 423



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 69/128 (53%), Gaps = 6/128 (4%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPS 173
           ++ Q+ +   +   I+   I  N +    ++  LC+ G +++A   +Q++  +G+ L   
Sbjct: 426 KNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHL--D 483

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +++YN +++G  K G F+EAL  +++M++    P + TY+ L++A  +    D+    L+
Sbjct: 484 VKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLR 543

Query: 234 MMKLDGCS 241
            M + G +
Sbjct: 544 EMIVQGSA 551



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 70/363 (19%), Positives = 150/363 (41%), Gaps = 30/363 (8%)

Query: 155 MEEAVRAFQEMEGF--ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           +++AV +F  +      ++P  E +N I+    K+  F+ A+ F  +M+   + P   T+
Sbjct: 44  VDDAVSSFNHILHMRNPVQPIFE-FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTF 102

Query: 213 DGLIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + LI  +      +    +  K+ KL G  PD +T   LI+     G ++     +  ++
Sbjct: 103 NILINCFCHLGHLNFAFSVLAKIFKL-GFHPDTVTITTLIKGLCLNGKVREALHFHDDVI 161

Query: 272 TKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            K  HL   +   +++     G     L  + K    L+     +   ++  L     K+
Sbjct: 162 AKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLC----KD 217

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTT 385
            +     DL  ++  +    ++V    L+ + CL+  R  ++V    +M    ++ +V T
Sbjct: 218 KLVIHASDLCSEMIVKRIFPDVVTYTTLI-YGCLIVGRLKEAVGLFNQMLLKNIKPDVYT 276

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
            NI++    K  + K  R +L+ +  + V  +IVT   L        DG   ++   +  
Sbjct: 277 FNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSL-------MDGYFLVKQENKAT 329

Query: 446 FLFKTV-------EINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           F+F T+       ++ +  +++    K   +     ++  +   S      TY +LID +
Sbjct: 330 FVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGL 389

Query: 499 IKH 501
           +K+
Sbjct: 390 LKY 392


>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 439

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 149/364 (40%), Gaps = 67/364 (18%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  + + L N  +  Q   +F+ M     K  I+ + S  +I +  +  L+++A    + 
Sbjct: 97  YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTS--LIAVYGKSELLDKAFSTLEY 154

Query: 165 MEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           M+  +  KP +  +  +I    K+G+F+     + EM  + +   + TY+ +I  YGK  
Sbjct: 155 MKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNTIIDGYGKAG 214

Query: 224 MYDEIDMCLKMMKLDGCS-------------------------PDHITYNLLIQEFACAG 258
           M++E++  L  M  DG S                         PD  T+N+LI  F  AG
Sbjct: 215 MFEEMENVLADMIEDGDSLPDVFTLNSIIGSSEMVAHEEDGELPDITTFNILILSFGKAG 274

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           + K+M      M  +   L + T   +++ +   G ++KM               +D+ R
Sbjct: 275 MYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGKIEKM---------------DDVFR 319

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           K+    +K               + I    LV      S A L+    IDS++R++ ++ 
Sbjct: 320 KMKYQGVK--------------PNSISYCSLV---NAYSKAGLVGK--IDSILRQIVNSD 360

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGT 435
           V  +    N I+ AY +  D   ++ L  ++  R  KPD +T   +   Y A  I FD  
Sbjct: 361 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHGI-FDAV 419

Query: 436 GALE 439
             LE
Sbjct: 420 QELE 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 25/236 (10%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
           T D + ++I     S    +     +  K++   + + F    +I   C+ G  +   R 
Sbjct: 128 TIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRI 187

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--------------- 206
             EM    +  S   YN+II GY K G F E    L +M E   S               
Sbjct: 188 ILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENVLADMIEDGDSLPDVFTLNSIIGSSE 247

Query: 207 ----------PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
                     P   T++ LI ++GK  MY ++   +  M+    S   +TYN++I+ F  
Sbjct: 248 MVAHEEDGELPDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGK 307

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
           AG +++M+  ++ M  + +   S +  ++++AY   G++ K++   ++++NS   L
Sbjct: 308 AGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVL 363



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 143/353 (40%), Gaps = 50/353 (14%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P  + Y  +        + ++A L    M    L P  D Y  LI  YGK ++ D+   
Sbjct: 91  EPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAFS 150

Query: 231 CLKMMK-LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS--------- 280
            L+ MK +  C PD  T+ +LI+   C   L R +      L KR+ L  S         
Sbjct: 151 TLEYMKSVSDCKPDVFTFTVLIR---CCCKLGRFD------LVKRIILEMSYLGVGCSTV 201

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD-- 338
           T   I+D Y   GM ++ME     ++     L +  V  L  +   + M +  +D G+  
Sbjct: 202 TYNTIIDGYGKAGMFEEMENVLADMIEDGDSLPD--VFTLNSIIGSSEMVAHEED-GELP 258

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           D+ +        + + +LS      ++ + SV+  ME         T NI++  + K   
Sbjct: 259 DITT--------FNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGK 310

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
            + +  +  ++  + VKP+ ++   L +A  + G  G        +I  + + + +N+D 
Sbjct: 311 IEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVG--------KIDSILRQI-VNSDV 361

Query: 458 L--------VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +        ++  YG+   L   +E+Y  +E    +  + T+  +I     H 
Sbjct: 362 VLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHG 414



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +V  F E   F+L  +   YN +I  + K GK  +      +MK   + P S +Y  L+ 
Sbjct: 281 SVMDFMEKRFFSL--TTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVN 338

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY K  +  +ID  L+ +       D   +N +I  +  AG L  M+  Y  M  ++   
Sbjct: 339 AYSKAGLVGKIDSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKP 398

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              T   ++  Y   G+ D +++  K+++++
Sbjct: 399 DKITFATMIKTYKAHGIFDAVQELEKQMIST 429



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 63/133 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +E+    F++M+   +KP+   Y S+++ YSK G   +    L ++   +
Sbjct: 301 VIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSD 360

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I AYG+      +      M+   C PD IT+  +I+ +   G+   ++
Sbjct: 361 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHGIFDAVQ 420

Query: 265 GTYKSMLTKRMHL 277
              K M++   +L
Sbjct: 421 ELEKQMISTGENL 433


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   M++A    ++M    + P+   YN++I+GYS  G++ EA+    EM+  +
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 319

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T   L+ +  KY    E       M + G +PD  +YN+++  +A  G L  M 
Sbjct: 320 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 379

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  ML   +     T   ++ AY N GMLDK
Sbjct: 380 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK 412



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 119/313 (38%), Gaps = 38/313 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G + +    F  M G  + P    +N +I  Y+  G  ++A++  NEM++  + P   T
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I A  +    D+       M   G +PD   YN LIQ F   G L + +     ++
Sbjct: 432 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 491

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYMF 330
              MHL      +I++     G +   +  +   +N        +   L + Y +   M 
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 551

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-------------HRGID------SVV 371
             L      +++ I    +V+C  L++  C +               RGI       S++
Sbjct: 552 KALRVFDAMVSAGIEPNVVVYC-TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610

Query: 372 -----------------REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
                             EM  + +  ++ T NI+L    K + F     L  EL   +V
Sbjct: 611 IDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 415 KPDIVTIGILYDA 427
           K +I+T+  + D 
Sbjct: 671 KINIITLNTMIDG 683



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +EAVR F+EM   ++ P +   + ++    K GK  EA    + M     +P   +Y
Sbjct: 303 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + ++  Y  K  + D  D+   +M  DG +PD  T+N+LI+ +A  G+L +    +  M 
Sbjct: 363 NIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 272 TKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLK 313
              +     T   ++ A    G M D MEKF + +     P K
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 150/381 (39%), Gaps = 35/381 (9%)

Query: 58  YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSS 117
           Y+S  H      +  + +A   L Q +NK+V           +WT ++       +   S
Sbjct: 257 YNSVVHALCKARAMDKAEAF--LRQMVNKRV--------LPNNWTYNNL------IYGYS 300

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            + Q  +   ++K + +  I  +      ++G LC+ G ++EA   F  M      P + 
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +++GY+  G   +     + M    ++P   T++ LI+AY    M D+  +    M
Sbjct: 361 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           +  G  PD +TY  +I      G +      +  M+ + +         ++  +   G L
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 480

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM-FSRLDDLGD--DLASRIG-RTELVW 351
            K ++    ++N+   L  D+V       I N     R+ D  +  DL   +G   + V 
Sbjct: 481 LKAKELISEIMNNGMHL--DIV--FFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 536

Query: 352 CLRLLSHACLLSH-----RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
              L+   CL+       R  D++V    SA +  NV     ++  Y K+        L 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMV----SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 407 SELPTRHVKPDIVTIGILYDA 427
            E+  R +KP  +   I+ D 
Sbjct: 593 REMLQRGIKPSTILYSIIIDG 613



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM-EGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFL 197
           F+   ++  LC++G   +A    + M EG A+  P++  YN++I G+ K G  N+A    
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  + P   TY+ ++ A  K +  D+ +  L+ M      P++ TYN LI  ++  
Sbjct: 243 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 302

Query: 258 GLLKRMEGTYKSM 270
           G  K     +K M
Sbjct: 303 GQWKEAVRVFKEM 315



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDG 214
           E A+  F ++    L+ ++ I N ++ G+ +  + +EAL + L+   E+   P   +Y  
Sbjct: 128 ELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 187

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           L+++        + D  L+MM   G  CSP+ + YN +I  F   G + +    +K M+ 
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           + +     T  +++ A      +DK E F ++++N R 
Sbjct: 248 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 48/116 (41%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+ G + +A   F       L P   +Y+ ++ GY  +GK  +AL   + M  
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             + P    Y  L+  Y K    DE     + M   G  P  I Y+++I     AG
Sbjct: 563 AGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG 618



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 115/295 (38%), Gaps = 16/295 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N   +  ++   CE    +EA+             P +  Y+ ++      GK  +A 
Sbjct: 143 RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQAD 202

Query: 195 LFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             L  M E     SP    Y+ +I  + K    ++     K M   G  PD +TYN ++ 
Sbjct: 203 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 262

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               A  + + E   + M+ KR+   + T   ++  Y + G   +  + +K +   R  +
Sbjct: 263 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM--RRHSI 320

Query: 313 KEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-----SHACLLSHR 365
             D+V    L     K        D+ D +A + G+   V+   ++     +  CL+   
Sbjct: 321 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK-GQNPDVFSYNIMLNGYATKGCLVD-- 377

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +  +   M    +  +  T N+++ AY          ++ +E+    VKPD+VT
Sbjct: 378 -MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431



 Score = 38.5 bits (88), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA+  F+E+    +K ++   N++I G  +  +  EA      +    L P   TY  +
Sbjct: 656 DEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 715

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME----GTYKSML 271
           I    K  + +E +     M+  GC P+    N +++E     LLK+ E    G Y S +
Sbjct: 716 ITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE-----LLKKNEIVRAGAYLSKI 770

Query: 272 TKR-MHLRSSTMVAILDAYMNFG 293
            +R   L   T + ++D + + G
Sbjct: 771 DERNFSLEHLTTMLLVDLFSSKG 793


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 132/319 (41%), Gaps = 15/319 (4%)

Query: 124 QVFDMWKNIEKSRINEFNSQK--------------IIGMLCEEGLMEEAVRAFQEMEGFA 169
           ++   WK+ ++ + N+  +Q               +I   C+   +EE+   +++M    
Sbjct: 292 EILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNG 351

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           + P +   +SI++G+ + GK  EA +   EM EM L P   +Y  +I +  K     E  
Sbjct: 352 IMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAF 411

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                M + G S D +T   ++      G  K  E  ++++L   +     T  A+LD Y
Sbjct: 412 NLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGY 471

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTE 348
              G ++  E   +++     P        +   Y K  M S+  D+  ++  R +    
Sbjct: 472 CKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNT 531

Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
           +V+ + +  +         D   +EM+S ++  +    +I+L    ++      R L+ +
Sbjct: 532 IVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIID 591

Query: 409 LPTRHVKPDIVTIGILYDA 427
           + ++ + PDIV    L D 
Sbjct: 592 MYSKGIDPDIVNYASLIDG 610



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 141/350 (40%), Gaps = 48/350 (13%)

Query: 127 DMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D  K ++  R+ E N     ++  L   G M+EA     +M    + P +  Y S+I GY
Sbjct: 552 DFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGY 611

Query: 185 SKIGKFNEALLFLNEMKEMN----------------------------------LSPQSD 210
            K G    AL  + EMKE N                                  L+P   
Sbjct: 612 FKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCI 671

Query: 211 TYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           TY+ +I  Y  K K  D +D+ L  MK  G  P+ +TYN+LI      G +++ E     
Sbjct: 672 TYNTIINTYCIKGKTEDALDI-LNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDE 730

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           ML         T   ++ AY      DK+ + +++L+ S   L   +   L  V+ +  M
Sbjct: 731 MLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGM 790

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTA 386
             +   + D++  R    +LV    L+   C  SH  ++  ++   +M    +  N+TT 
Sbjct: 791 TRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSH--VEKALKTYSQMFVDGIAPNITTY 848

Query: 387 NIILL----AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
           N +L     A L  +  +    L+SE+  R + P+  T  IL     R+G
Sbjct: 849 NTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVG 898



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 14/278 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G ME A    Q+ME   + P++  ++SII+GY+K G  ++A+  L EM + N+ P +
Sbjct: 472 CKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNT 531

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y  LI  Y K    D  D   K MK       ++ +++L+      G +         
Sbjct: 532 IVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIID 591

Query: 270 MLTKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRTPLKEDLVRKLAEV-- 323
           M +K +        +++D Y   G     L  +++  ++ +         L++ L  +  
Sbjct: 592 MYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK 651

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           Y   Y+ SR+ +LG         T +  +C++  +   L        ++ EM+S  +  N
Sbjct: 652 YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDAL-------DILNEMKSYGIMPN 704

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             T NI++    K    +     L E+      P  +T
Sbjct: 705 AVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPIT 742



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL----FLNEMKEMNL 205
           C    +E+A++ + +M    + P++  YN+++ G S  G   E +      ++EM E  L
Sbjct: 821 CTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGL 880

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P + TYD L+  YG+     +  +    M   G  P   TYN+LI ++A +G +     
Sbjct: 881 VPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARE 940

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
               +LTK     S T   +   ++N     ++++  KR
Sbjct: 941 LLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKR 979



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 17/268 (6%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P    YN+II+ Y   GK  +AL  LNEMK   + P + TY+ LI    K    ++
Sbjct: 664 LGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEK 723

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            +  L  M +    P  IT+  L++ ++ +    ++   ++ ++   + L  +    ++ 
Sbjct: 724 AESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLIT 783

Query: 288 AYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKL-----AEVYIKNYMFSRLDDLGD 338
            +   GM  K    +++  KR +++       L+R        E  +K Y    +D +  
Sbjct: 784 VFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAP 843

Query: 339 DLASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKM 396
           ++      T     L  LS+A L        + +V EM    +  N  T +I++  Y ++
Sbjct: 844 NI------TTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRV 897

Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            + K   +L  E+ T+   P + T  +L
Sbjct: 898 GNRKKTIILHIEMITKGFVPTLKTYNVL 925



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 127/310 (40%), Gaps = 44/310 (14%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-------FNEALLFL----- 197
           CE GLM +A    +      +K  +  YN+++  + K G        FNE L F      
Sbjct: 243 CEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDR 302

Query: 198 ---------NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                    NE+K  NL P   TY  LI AY K+   +E     K M ++G  PD +T +
Sbjct: 303 LKNNDVVTQNEIK--NLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCS 360

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            ++  F   G L      ++ M    +     +   I+++    G +  ME F     N 
Sbjct: 361 SILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRV--MEAF-----NL 413

Query: 309 RTPLKEDLVRKLA-EVYIKNYMFSRLDDLG-----DDLASRIGRTELVW-CLR---LLSH 358
           ++ +   +VR ++ ++     +   L  +G     +++   I +  L   C+    LL  
Sbjct: 414 QSQM---VVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDG 470

Query: 359 ACLLSHRGI-DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            C L    + + V+++ME   V  NV T + I+  Y K         +L E+  R+V P+
Sbjct: 471 YCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPN 530

Query: 418 IVTIGILYDA 427
            +   IL D 
Sbjct: 531 TIVYAILIDG 540



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II    ++G++ +AV   +EM    + P+  +Y  +I GY K G+ + A  F 
Sbjct: 495 NVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFC 554

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            EMK   L   +  +D L+    +    DE    +  M   G  PD + Y  LI  +
Sbjct: 555 KEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGY 611



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 11/209 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS----RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
            +K  SRS +  ++  + + +  S     +  +N+  +I + C  G+  +A     EM  
Sbjct: 746 LVKAYSRSEKADKILQIHEKLVASGLELSLTVYNT--LITVFCRLGMTRKAKVVLDEMVK 803

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYK 223
             +   L  YN++I GY       +AL   ++M    ++P   TY+    GL  A    +
Sbjct: 804 RGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEE 863

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           M +E +  +  M   G  P+  TY++L+  +   G  K+    +  M+TK       T  
Sbjct: 864 MMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYN 923

Query: 284 AILDAYMNFG-MLDKMEKFYKRLLNSRTP 311
            ++  Y   G M++  E     L   R P
Sbjct: 924 VLISDYAKSGKMIEARELLNDLLTKGRIP 952



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 121/283 (42%), Gaps = 24/283 (8%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+ +    + +M    + P +   N ++H   K+G  + AL +L     +++   + TY
Sbjct: 108 GLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI--DNVTY 165

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  + +  + D+    L  M   G   D IT N+L++ +   GL++  E    +++ 
Sbjct: 166 NTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVD 225

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS-RTPLKEDLV--RKLAEVYIKNYM 329
             +      +  ++D Y   G++ +  +  +   NS R+ +K D+V    L + + K   
Sbjct: 226 GGVTKDVIGLNTLIDGYCEAGLMSQATELIE---NSWRSDVKIDIVTYNTLLKAFCKTGD 282

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
            +R + L +++       +     RL +          + VV + E   ++  + T   +
Sbjct: 283 LTRAESLFNEILGFWKDED-----RLKN----------NDVVTQNEIKNLQPTLVTYTTL 327

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-GILYDARRIG 431
           + AY K    +    L  ++    + PD+VT   ILY   R G
Sbjct: 328 IAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHG 370



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 108 AVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV----RAF 162
           A+IR +   S   + +     M+ +     I  +N+  ++G L   GLMEE +    +  
Sbjct: 815 ALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNT--LLGGLSNAGLMEEMMEETEKLV 872

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            EM    L P+   Y+ ++ GY ++G   + ++   EM      P   TY+ LI  Y K 
Sbjct: 873 SEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKS 932

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLL 250
               E    L  +   G  P+  TY++L
Sbjct: 933 GKMIEARELLNDLLTKGRIPNSFTYDIL 960


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 1/277 (0%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +  AVR  +EME     P++  Y  ++H + K G +++    L EM    L+  
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 399

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           S  Y+G+I A  K    DE    ++ M+  GC+PD  +YN +I        ++  E  ++
Sbjct: 400 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 459

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           ++L + +     T   I+ A +  G      +  K ++     L       L +   K+ 
Sbjct: 460 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 519

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
              R   L +++A +  +   V    L+S  C     R    + ++M +  +  ++ T N
Sbjct: 520 NVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYN 579

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    KM        LL +L   +V PDI+T  IL
Sbjct: 580 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 616



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 128/315 (40%), Gaps = 40/315 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            L+   R RQ  +   M   + +  +  FN+  +IG    EG + EA   ++ M     +
Sbjct: 270 LLQGLCRVRQADEARAMLGRVPELNVVLFNT--VIGGCLAEGKLAEATELYETMGLKGCQ 327

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y+ ++HG  K+G+   A+  L EM++   +P   TY  ++ ++ K  M+D+    
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 387

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L+ M   G + +   YN +I      G +    G  + M ++  +    +   I+    N
Sbjct: 388 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 447

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
              +++ E  ++ L      L+E +V                       A+ I    ++ 
Sbjct: 448 NEQMEEAEHMFENL------LEEGVV-----------------------ANGITYNTII- 477

Query: 352 CLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
                 HA L   R  D+V   +EM       +V + N ++ A  K  +     VLL E+
Sbjct: 478 ------HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531

Query: 410 PTRHVKPDIVTIGIL 424
             + +KP+ V+  IL
Sbjct: 532 AEKGIKPNNVSYNIL 546



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 99/263 (37%), Gaps = 42/263 (15%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G  +EA+   + M      P   +Y ++IH     G   EA   LNEM  M  +  
Sbjct: 169 LCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 228

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK-RMEGTY 267
            +T+D +++         E    +  M   GC P  +TY  L+Q     GL + R     
Sbjct: 229 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQ-----GLCRVRQADEA 283

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIK 326
           ++ML +   L       ++   +  G L +  + Y+ + L    P          + +  
Sbjct: 284 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQP----------DAHTY 333

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
           + +   L  LG     RIG       +RLL               REME      NV T 
Sbjct: 334 SILMHGLCKLG-----RIGSA-----VRLL---------------REMEKKGFAPNVVTY 368

Query: 387 NIILLAYLKMKDFKHLRVLLSEL 409
            I+L ++ K   +   R LL E+
Sbjct: 369 TIVLHSFCKNGMWDDTRALLEEM 391



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 5/225 (2%)

Query: 121 QIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+ +   M++N+  E    N      II  L  +G  ++AVR  +EM        +  YN
Sbjct: 450 QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYN 509

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKL 237
            +I    K G  + +L+ L EM E  + P + +Y+ LI    K  ++ D +++  +M+  
Sbjct: 510 GLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLN- 568

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            G +PD +TYN LI      G +       + +  + +H    T   ++  +    +LD 
Sbjct: 569 QGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDD 628

Query: 298 MEKFYKRLLNSRTPLKE-DLVRKLAEVYIKNYMFSRLDDLGDDLA 341
                 R + +  P+ +  +++ L +   K Y+ ++ DD    L 
Sbjct: 629 AAMLLNRAMAAVCPVGDRRIMQILPDKNFKLYLHTKGDDFQHSLG 673



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 31/194 (15%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           Q +I  LC++G + EA     EM        +  ++ ++ G   +G+  EA   ++ M  
Sbjct: 198 QTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMT 257

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDE-------------------IDMCL----------- 232
               P   TY  L+Q   + +  DE                   I  CL           
Sbjct: 258 KGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATEL 317

Query: 233 -KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M L GC PD  TY++L+      G +       + M  K       T   +L ++  
Sbjct: 318 YETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCK 377

Query: 292 FGMLDKMEKFYKRL 305
            GM D      + +
Sbjct: 378 NGMWDDTRALLEEM 391


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 7/269 (2%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N      II   C+ G ME A    +EME   +   +++Y+S++HGY+ I   N+ L
Sbjct: 343 SSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCL 402

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +    +KE    P   +Y  L+  Y K     +     K M+  G   ++ TY++LI  F
Sbjct: 403 VVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGF 462

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                       ++ ML   +    +    +++A+   G +D+     +++   R     
Sbjct: 463 IHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSN 522

Query: 315 DLVRKLAEVY-IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSV 370
              R + E Y +   M S LD L  DL  R G    V     L H  +  H   R + SV
Sbjct: 523 RAFRPIIEGYAVAGDMKSALDTL--DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV-SV 579

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDF 399
           + +M  A +  N  T  II+  Y    D 
Sbjct: 580 LDKMSIAGITPNEHTYTIIMRGYAASGDI 608



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I      G + EA    ++M+   + P++  Y S I+   K G    A   +
Sbjct: 661 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 720

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM ++ L P   TY  LI+ + +  + D    C + MKL G  PD  +Y+ L+      
Sbjct: 721 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV-----T 775

Query: 258 GLLKR---MEG-TYKSMLT 272
            LL R   MEG TY  +++
Sbjct: 776 SLLSRATVMEGSTYTGIIS 794



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 78  NALIQRLNKK--VSCPLQILQH---DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI 132
           NALI  L +K  V   + +L      G    +H + +I  ++  + S  I + F+ +  I
Sbjct: 561 NALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII--MRGYAASGDIGKAFEYFTKI 618

Query: 133 EKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           ++S  +++ +  + ++   C+ G M+ A+   +EM    +  +  IYN +I G+++ G  
Sbjct: 619 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 678

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            EA   + +MKE  + P   TY   I A  K       +  ++ M   G  P+  TY  L
Sbjct: 679 WEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTL 738

Query: 251 IQEFACAGLLKRMEGTYKSM 270
           I+ +A   L  R    ++ M
Sbjct: 739 IKGWARVSLPDRALKCFEEM 758



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 120/318 (37%), Gaps = 50/318 (15%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           SR      V   ++ I K    EF    +I    + G    A   F+ M    ++P+  +
Sbjct: 222 SRPDNWQAVVSAFERIPKPSRREFGL--MIVYYAKRGDKHHARATFENMRARGIEPNAFV 279

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           + S++H Y+       AL  + EMK   L     TY  LI  + K       D   K  K
Sbjct: 280 FTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAK 339

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
               S + I Y+ +I     +G ++R E   + M           + A +D Y +     
Sbjct: 340 TKLSSLNGIIYSNIIHAHCQSGNMERAEELVREM-------EEDGIDAPIDVYHS----- 387

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
            M   Y  + N    L                +F RL + G             +   ++
Sbjct: 388 -MMHGYTIIQNENKCL---------------VVFERLKECG-------------FKPSII 418

Query: 357 SHACLLS-HRGID------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           S+ CLL+ +  I       S+ +EMES  ++ N  T ++++  ++ + DF +   +  E+
Sbjct: 419 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 478

Query: 410 PTRHVKPDIVTIGILYDA 427
               ++PD     +L +A
Sbjct: 479 LRSGLQPDRAIYNLLIEA 496



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     I+      G + +A   F +++   LK  + IY +++    K G+   AL   
Sbjct: 591 NEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVT 650

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    +   +  Y+ LI  + +     E +  +K MK DG  P+  TY   I     A
Sbjct: 651 REMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKA 710

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G ++R E   + M+   +     T   ++  +    + D+  K ++ +
Sbjct: 711 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 758


>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 599

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    ++EA      M+   + P + ++N+++ G+   G+F +A     EM+  +  P +
Sbjct: 203 CRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRDCPPNA 262

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  L+Q  G     DE+      M+  GC+PD +TY  L+  F  AG L +      S
Sbjct: 263 VSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDS 322

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           M    + +     +    A+     L++  +  +R+   R P
Sbjct: 323 MSRDGLRVDPGVYLGFFVAHEKEQQLEECLELMERMRECRCP 364



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 125 VFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ + +E+     N  +   ++  L  +G ++E +R F EM      P    Y +++ 
Sbjct: 246 AFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVT 305

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + K G+ ++   FL+ M    L      Y G   A+ K +  +E    ++ M+   C P
Sbjct: 306 AFCKAGRLSQGYEFLDSMSRDGLRVDPGVYLGFFVAHEKEQQLEECLELMERMRECRCPP 365

Query: 243 DHITYNLLIQ 252
           D   YN++I+
Sbjct: 366 DLNIYNVVIR 375



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  A R  +E++   L  SL  Y ++++G+ ++ K +EA   L  MK   ++P    +
Sbjct: 172 GHVAAAERLVEELQP-RLPLSLRHYTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVF 230

Query: 213 DGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           + L+  +   G+++  D  ++  +M + D C P+ ++Y  L+Q     G +  +   +  
Sbjct: 231 NTLLAGFVADGRFE--DAFELAREMERRD-CPPNAVSYTTLMQGLGSKGRVDEVMRVFVE 287

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
           M  K     S T   ++ A+   G L +  +F   +  SR  L+ D
Sbjct: 288 MRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSM--SRDGLRVD 331



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +E  +EE +   + M      P L IYN +I    K+G+  +A+   NE +   LSP  D
Sbjct: 344 KEQQLEECLELMERMRECRCPPDLNIYNVVIRLSCKLGETKQAIALWNETENSGLSPGVD 403

Query: 211 TYDGLIQAYGKYKMYDEIDMC 231
           T+   I   G       +D C
Sbjct: 404 TF--AIMVNGLVGQGSLVDAC 422


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           M  E G  +     FQEME   ++P+L +YN+++    K GK   A     EM E+ + P
Sbjct: 303 MFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVP 362

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T   +I+ YGK +   +     + MK +G   D I YN L+   A  GL++  E  +
Sbjct: 363 NEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLF 422

Query: 268 KSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           + M  +  H +  S +  A+L+ Y + G +DK  K +  +  S
Sbjct: 423 RDM-KQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKS 464



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L ++AV  F+ M   +L P    Y++I+  Y+++GK  E +      +     P   T+ 
Sbjct: 239 LYDKAVHWFERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFS 298

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L + +G+   YD I    + M+  G  P+ + YN L++    AG      G ++ M+  
Sbjct: 299 VLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIEL 358

Query: 274 RMHLRSSTMVAILDAY 289
            +     T+ A++  Y
Sbjct: 359 GIVPNEKTLTAVIKIY 374



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y++II    K   +++A+ +   M + +L P   TY  ++  Y +    +E+    +  +
Sbjct: 227 YSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGR 286

Query: 237 LDGCSPDHITYNLLIQEFACAG 258
             G  PD IT+++L + F  AG
Sbjct: 287 ATGWKPDPITFSVLGKMFGEAG 308


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 36/203 (17%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G M+ A   F  M  F++ P++ +YNS+I  Y K+G  +EA+    E++   
Sbjct: 293 LIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352

Query: 205 LSPQSDTYDGLIQAYGKYKMYDE-----------------------IDMCLKMMKLD--- 238
           +SP   TY  LI+        +E                       ID C K  K+D   
Sbjct: 353 VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKAL 412

Query: 239 ---------GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                    G  P+ IT++ LI  +     L+   G Y  M+ K +     T  A++D +
Sbjct: 413 EICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGH 472

Query: 290 MNFGMLDKMEKFYKRLL-NSRTP 311
             +G + +  K Y  +L N  TP
Sbjct: 473 CKYGSMKEALKLYSDMLDNGITP 495



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 70/172 (40%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC     EEA   F++M    +  +   YNS+I G  K GK ++AL   ++
Sbjct: 358 FTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQ 417

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  + P   T+  LI  Y K +           M +   SPD +TY  +I      G 
Sbjct: 418 MTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGS 477

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           +K     Y  ML   +     T+  +LD     G +    + +   +  +TP
Sbjct: 478 MKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTP 529



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  +IR L + SR+ +   +F+     E    N      +I   C+EG M++A+    +M
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTK-EGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P++  ++++I GY KI     A+   +EM   +LSP   TY  +I  + KY   
Sbjct: 419 TENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSM 478

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLI 251
            E       M  +G +P+  T + L+
Sbjct: 479 KEALKLYSDMLDNGITPNCYTISCLL 504



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 51/306 (16%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F     ++ S+       ++I +LC+  L+EEA+  + ++ G AL  +++  N +++   
Sbjct: 102 FSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKV-GAAL--TIQACNVLLYVLV 158

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLD 238
           K G+F        EM    LSP   T+  LI    +        +M+DE       M++ 
Sbjct: 159 KTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDE-------MRVK 211

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P  I Y +LI+       ++  E  +++M    ++    T   ++D Y       + 
Sbjct: 212 GIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQA 271

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
            + Y+ +L       E LV    +V     +   L   G+  A+R               
Sbjct: 272 LRLYQDMLG------EGLV---PDVVTFGILIDGLCKFGEMKAAR--------------- 307

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                     ++   M    V  N+   N ++ AY K+ D      L  EL    V PD+
Sbjct: 308 ----------NLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDV 357

Query: 419 VTIGIL 424
            T  IL
Sbjct: 358 FTYSIL 363



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 111/289 (38%), Gaps = 17/289 (5%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           +L + G  E   R ++EM    L PS+  + ++I G  + G    A    +EM+   + P
Sbjct: 156 VLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP 215

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
               Y  LI+        +E +   + M+  G  P+  TYN L+  +      K+    Y
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY 275

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           + ML + +     T   ++D    FG +      +  ++         +   L + Y K 
Sbjct: 276 QDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCK- 334

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK--------- 378
                + D+ + +A  +          + +++ L+  RG+ SV R  E+           
Sbjct: 335 -----VGDVSEAMALFLELERFEVSPDVFTYSILI--RGLCSVSRTEEAGNIFEKMTKEG 387

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +  N  T N ++    K         + S++    V+P+++T   L D 
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDG 436



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 149 LCEEGLMEEAVRAFQE----------MEGFALKPSLE---IYNSIIHGYSKIGKFNEALL 195
           LC++G + +A+  F E          ++    KPSL     Y ++IHG  + G+F++A+ 
Sbjct: 507 LCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVK 566

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             ++M+   L P    Y  +++   + K Y  + +   M+K  G  P+   + +L + + 
Sbjct: 567 LFSDMRRYGLQPDEVIYVVMLRGLFQVK-YILMMLHADMLKF-GVIPNSAVHVILCECYQ 624

Query: 256 CAGLLKRMEGTYKSM 270
            +G LK  +   K +
Sbjct: 625 ESGFLKSAQNCSKDL 639


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+   M++A    ++M    + P+   YN++I+GYS  G++ EA+    EM+  +
Sbjct: 263 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 322

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T   L+ +  KY    E       M + G +PD  +YN+++  +A  G L  M 
Sbjct: 323 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 382

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  ML   +     T   ++ AY N GMLDK
Sbjct: 383 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK 415



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 103/276 (37%), Gaps = 34/276 (12%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G + +    F  M G  + P    +N +I  Y+  G  ++A++  NEM++  + P   T
Sbjct: 375 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I A  +    D+       M   G +PD   YN LIQ F   G L + +     ++
Sbjct: 435 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 494

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              MHL      +I++     G +   +  +   +N    L  D V       + N +  
Sbjct: 495 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVN--VGLHPDAV-------VYNMLM- 544

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                  D    +G+ E                R  D++V    SA +  NV     ++ 
Sbjct: 545 -------DGYCLVGKMEKAL-------------RVFDAMV----SAGIEPNVVGYGTLVN 580

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            Y K+        L  E+  R +KP  +   I+ D 
Sbjct: 581 GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDG 616



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +EAVR F+EM   ++ P +   + ++    K GK  EA    + M     +P   +Y
Sbjct: 306 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 365

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + ++  Y  K  + D  D+   +M  DG +PD  T+N+LI+ +A  G+L +    +  M 
Sbjct: 366 NIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424

Query: 272 TKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLK 313
              +     T   ++ A    G M D MEKF + +     P K
Sbjct: 425 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEM-EGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFL 197
           F+   ++  LC++G   +A    + M EG A+  P++  YN++I G+ K G  N+A    
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  + P   TY+ ++ A  K +  D+ +  L+ M      P++ TYN LI  ++  
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305

Query: 258 GLLKRMEGTYKSM 270
           G  K     +K M
Sbjct: 306 GQWKEAVRVFKEM 318



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDG 214
           E A+  F ++    L+ ++ I N ++ G+ +  + +EAL + L+   E+   P   +Y  
Sbjct: 131 ELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 190

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           L+++        + D  L+MM   G  CSP+ + YN +I  F   G + +    +K M+ 
Sbjct: 191 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 250

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           + +     T  +++ A      +DK E F ++++N R 
Sbjct: 251 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 48/116 (41%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+ G + +A   F       L P   +YN ++ GY  +GK  +AL   + M  
Sbjct: 506 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS 565

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             + P    Y  L+  Y K    DE     + M   G  P  I Y+++I     AG
Sbjct: 566 AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAG 621



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 115/295 (38%), Gaps = 16/295 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAF-QEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           R+N   +  ++   CE    +EA+             P +  Y+ ++      GK  +A 
Sbjct: 146 RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQAD 205

Query: 195 LFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             L  M E     SP    Y+ +I  + K    ++     K M   G  PD +TYN ++ 
Sbjct: 206 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 265

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               A  + + E   + M+ KR+   + T   ++  Y + G   +  + +K +   R  +
Sbjct: 266 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM--RRHSI 323

Query: 313 KEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL-----SHACLLSHR 365
             D+V    L     K        D+ D +A + G+   V+   ++     +  CL+   
Sbjct: 324 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK-GQNPDVFSYNIMLNGYATKGCLVD-- 380

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +  +   M    +  +  T N+++ AY          ++ +E+    VKPD+VT
Sbjct: 381 -MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA+  F+E+    +K ++   N++I G  +  +  EA      +    L P   TY  +
Sbjct: 659 DEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 718

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME----GTYKSML 271
           I    K  + +E +     M+  GC P+    N +++E     LLK+ E    G Y S +
Sbjct: 719 ITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE-----LLKKNEIVRAGAYLSKI 773

Query: 272 TKR-MHLRSSTMVAILDAYMNFGMLDKMEKF 301
            +R   L   T + ++D + + G   +  +F
Sbjct: 774 DERNFSLEHLTAMLLVDLFSSKGTCREQIRF 804


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 125/288 (43%), Gaps = 35/288 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +++    +I   C+ G ME+AV+ F EM     + PS  +YN++I GY  +GK + AL +
Sbjct: 182 DKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQY 241

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +M +  ++    TY+ L+ A        +    L+ M+ +G SPD  TYN+LI  +  
Sbjct: 242 REDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCK 301

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G  K+    ++ M  K +   + T  +++  +   G + + ++ +   +  +  ++ D+
Sbjct: 302 EGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFN--VAVKKGIRPDV 359

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
           V           M++ L +                     SH           ++ EME 
Sbjct: 360 V-----------MYNALIN---------------------SHCTGGDMERAYEIMAEMEK 387

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++  +  T N ++  +  +      R L+ E+  R ++PD+V+   L
Sbjct: 388 KRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTL 435



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + +++   +EK RI  ++     ++   C  G ++EA     EM    ++P L  YN++I
Sbjct: 377 RAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLI 436

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
            GYS  G   +AL   +EM +   +P   TY+ LIQ   K +  D+ +  +K M   G +
Sbjct: 437 SGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGIT 496

Query: 242 PDHITYNLLIQ 252
           PD  TY  LI+
Sbjct: 497 PDDSTYISLIE 507



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R        +I +   +G ++E  R F       ++P + +YN++I+ +   G    A  
Sbjct: 321 RATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYE 380

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + EM++  + P   TY+ L++ +      DE    +  M   G  PD ++YN LI  ++
Sbjct: 381 IMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYS 440

Query: 256 CAGLLK 261
             G +K
Sbjct: 441 MKGDIK 446


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 29/293 (9%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC EG + EA++ F +M G   +P +  Y ++I+G  K+G  + A+ FL  M++ N  P 
Sbjct: 134 LCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPT 193

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y  +I +  K +   E       M   G SP++ TY+ LI      G  K     + 
Sbjct: 194 VVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFY 253

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           +M+ +++     T   ++DA    GM+ K       ++ S   LK D+V           
Sbjct: 254 AMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQS--DLKPDVVT---------- 301

Query: 329 MFSRLDDLGDDLASRIGRTELVW-------CL-RLLSHACLLSH----RGID---SVVRE 373
            ++ L D G  L S +G+T  V+       C+  ++S+  L++     + +D    +  E
Sbjct: 302 -YNSLMD-GHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEE 359

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           M    +  +  T N ++     +   +    L  E+      PD+VT  IL+D
Sbjct: 360 MSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFD 412



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  +M++A+  F+EM    L P    YN++IHG   +G+  +A+   +EM    
Sbjct: 340 LINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 399

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L     K     E  + LK+++     PD   Y++++     AG L+   
Sbjct: 400 QIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAAR 459

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             +  + +K +H    T   +++     G+L +  K +  +
Sbjct: 460 DLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 500



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/317 (19%), Positives = 115/317 (36%), Gaps = 11/317 (3%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           + L + +R +    V  ++K ++   I  N +    +I   C    +  A     ++   
Sbjct: 59  KLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKL 118

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +PS   + ++I G    GK  EAL   ++M      P   TY  LI    K       
Sbjct: 119 GYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTA 178

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L+ M+   C P  + Y+ +I        L      +  ML K +   + T  +++  
Sbjct: 179 IRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHG 238

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
               G   +  + +  +++ +    +     L +   K  M  +   + D +     + +
Sbjct: 239 LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298

Query: 349 LVWCLRLLSHACLLSHRG-----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           +V    L+   CL S  G      D++VR+     V    T  N     Y K++      
Sbjct: 299 VVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLIN----GYCKIQIMDKAM 354

Query: 404 VLLSELPTRHVKPDIVT 420
            L  E+  + + PD VT
Sbjct: 355 GLFEEMSQQGLIPDTVT 371


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 130/313 (41%), Gaps = 3/313 (0%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R + + + +++   I+K  I  + +     +  +C  G ++ A    +EM     +P++ 
Sbjct: 397 REKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVV 456

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           IY ++I  + +  +F +A+  L EM+E  ++P +  Y+ LI    K K  DE    L  M
Sbjct: 457 IYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEM 516

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             +G  PD  TY   I  +  AG     +   K ML   +         +++ Y   G +
Sbjct: 517 VENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKV 576

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLR 354
            +    ++ ++             L    +KN   +  +++  ++  + I      +   
Sbjct: 577 IEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTL 636

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +   + L + +   S+  EM  A +  NV   N++L  + +  + +  + LL E+  +  
Sbjct: 637 IDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGF 696

Query: 415 KPDIVTIGILYDA 427
            P+ VT   + D 
Sbjct: 697 PPNAVTYCTIIDG 709



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     +I  LC+EG +E A   F  M+   L P++  Y S+++GY K+G+ +E     
Sbjct: 807 NDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVF 866

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGCSPDHITYNLLIQ 252
           +E+    + P +  Y  +I A+ K  M  +  + L  M       DGC     T   L+ 
Sbjct: 867 DEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLS 926

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            FA  G ++  E   ++M+  +    SST++ +++
Sbjct: 927 GFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELIN 961



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 10/286 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G + +A   F EM G  + P +  Y ++I G+SK+G   +A    +EM +  L+  
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ L+  + +    ++    L  M   G  P+ +TY  +I  +  +G L      + 
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLKE--DLVRKLAE 322
            M  K +   S     ++D       +++     E   K   +S  P     + V K  +
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGK 784

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRW 381
             +   M +RL D   D   + G+   V    ++ + C   +      +   M+ A +  
Sbjct: 785 TELTTDMINRLMDGSFD---KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMP 841

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            V T   +L  Y KM     +  +  E+    ++PD +   ++ +A
Sbjct: 842 TVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINA 887



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G + EA  AF+ M    +    + Y  +++G  K GK N+A    +EM+   
Sbjct: 566 LINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   +Y  LI  + K     +       M   G + + I YN+L+  F  +G +++ +
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                M  K     + T   I+D Y   G L +  + +  +
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEM 726



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F+   +I    + G M++A   F EM    L  ++ IYN ++ G+ + G+  +A   L+E
Sbjct: 631 FSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDE 690

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           M      P + TY  +I  Y K     E       MKL G  PD   Y  L+
Sbjct: 691 MSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLV 742



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I ++ +EG ME+A   F  M  F + P    Y S+I G+ +     +    L E+K+ N+
Sbjct: 357 ICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNI 416

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
                TY   ++        D     +K M   GC P+ + Y  LI+ F
Sbjct: 417 VISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTF 465



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           KP+   YN +I    K G    A    + M++ NL P   TY  L+  Y K     E+  
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM-----HLRSSTMVAI 285
               +   G  PD+I Y+++I  F   G+  +       M  K        L  ST  A+
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRAL 924

Query: 286 LDAYMNFGMLDKMEKFYKRLL 306
           L  +   G ++  EK  + ++
Sbjct: 925 LSGFAKVGEMEVAEKVVENMV 945



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 53/337 (15%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA+   + M    L PS + YN +I G  K  +  +A   L EM  + L   +  Y  
Sbjct: 261 VDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSI 320

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI    K +  D  +  +  M   G S D + Y+  I   +  G +++ +  +  M+T  
Sbjct: 321 LIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFG 380

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK----LAEVYIKNYMF 330
           +   +    ++++ +                       +E  VRK    L E+  +N + 
Sbjct: 381 VTPGARAYASLIEGF----------------------FREKNVRKGYELLVEIKKRNIVI 418

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           S     G  +       +L                G  ++V+EM ++  R NV     ++
Sbjct: 419 SPY-TYGTAVKGMCSSGDL---------------DGAYNIVKEMGASGCRPNVVIYTTLI 462

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKT 450
             +L+   F     +L E+  + + PD       Y++  IG   + A +M +   FL + 
Sbjct: 463 KTFLQKSRFGDAVRVLKEMREQGIAPDT----FCYNSLIIGL--SKAKKMDEARSFLLEM 516

Query: 451 VEINTDPLVLAVYGKGHFLR-YCEEV-YSSLEPYSRE 485
           VE    P     +  G F+  Y E   ++S + Y +E
Sbjct: 517 VENGFKP---DAFTYGAFISGYIEAGEFASADKYVKE 550


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 17/280 (6%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA+     M     +P L  Y  +++G  K G  + A   LN+M++  L P    Y+ +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
               KYK  D+     K M+  G  P+ +TY+ LI      G           M+ ++++
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFY----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
               T  A++DA++  G L + EK Y    KR ++        L+           M  R
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC-------MHDR 376

Query: 333 LDD---LGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVTTAN 387
           LD+   + + + S+    ++V    L+   C       G++ V REM    +  N  T N
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME-VFREMSQRGLVGNTVTYN 435

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           I++    +  D    + +  E+ +  V P+I+T   L D 
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 5/294 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I    +EG + EA + + EM   ++ PS+  Y+S+I+G+    + +EA      
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M   +  P   TY+ LI+ + KYK  +E     + M   G   + +TYN+LIQ    AG 
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +  +K M++  +     T   +LD     G L+K    ++ L  S+          
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-SHRGIDSVVREMESAK 378
           + E   K        DL  +L+ +  + ++V    ++S  C   S    D++ +EM+   
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYDAR 428
              N    N ++ A L+  D +    L+ E+ +     D  TIG+    L+D R
Sbjct: 567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGR 620



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 2/194 (1%)

Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           + +    +++K +E    R N      +I  LC  G   +A R   +M    + P +  +
Sbjct: 270 KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           +++I  + K GK  EA    +EM + ++ P   TY  LI  +  +   DE     + M  
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             C PD +TYN LI+ F     ++     ++ M  + +   + T   ++      G  D 
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449

Query: 298 MEKFYKRLLNSRTP 311
            ++ +K +++   P
Sbjct: 450 AQEIFKEMVSDGVP 463



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 25/306 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+   M++A+  F+EME   ++P++  Y+S+I      G++++A   L++M E  
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI A+ K     E +     M      P  +TY+ LI  F     L   +
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEV 323
             ++ M++K       T   ++  +            YKR+       +E   R L    
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCK----------YKRVEEGMEVFREMSQRGLVGNT 431

Query: 324 YIKNYMFSRLDDLGD-DLASRIGR--------TELVWCLRLLSHACLLSHRGIDSVVRE- 373
              N +   L   GD D+A  I +          ++    LL   C         VV E 
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ++ +K+   + T NI++    K    +    L   L  + VKPD+V     Y+    GF 
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA----YNTMISGFC 547

Query: 434 GTGALE 439
             G+ E
Sbjct: 548 RKGSKE 553



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/409 (19%), Positives = 148/409 (36%), Gaps = 41/409 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I   C    +  A+    +M     +P++   +S+++GY    + +EA+  +
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M      P + T++ LI     +    E    +  M   GC PD +TY +++      
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234

Query: 258 G-------LLKRME----------------------------GTYKSMLTKRMHLRSSTM 282
           G       LL +ME                              +K M TK +     T 
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
            +++    N+G      +    ++  +          L + ++K       + L D++  
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTTANIILLAYLKMKDF 399
           R     +V    L++  C+  H  +D   +  E   S     +V T N ++  + K K  
Sbjct: 355 RSIDPSIVTYSSLINGFCM--HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 412

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
           +    +  E+  R +  + VT  IL        D   A E++K +        I T   +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472

Query: 460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508
           L    K   L     V+  L+    E   +TY  +I+ + K  GK  DG
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA-GKVEDG 520


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 133/299 (44%), Gaps = 39/299 (13%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+EG + +A + F E+   +L+P++  +N++I+GY K+G  +E     ++M++    P 
Sbjct: 250 FCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309

Query: 209 SDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
             TY  LI A        G + ++DE  MC +     G  P+ + +  LI   +  G + 
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDE--MCKR-----GLIPNDVIFTTLIHGHSRNGEID 362

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR--- 318
            M+ +Y+ ML+K +         +++ +   G L         ++  R  L+ D +    
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI--RRGLRPDKITYTT 420

Query: 319 ------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--IDS- 369
                 +  +V     +   +D  G +L  R+G + LV         C +   G  ID+ 
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIEL-DRVGFSALV---------CGMCKEGRVIDAE 470

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +REM  A ++ +  T  +++ A+ K  D +    LL E+ +    P +VT  +L + 
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           S  + GM C+EG + +A RA +EM    +KP    Y  ++  + K G        L EM+
Sbjct: 454 SALVCGM-CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
                P   TY+ L+    K       DM L  M   G  PD ITYN L++
Sbjct: 513 SDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 114/304 (37%), Gaps = 36/304 (11%)

Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F +   +EKSR   + F    +I  LC+E  M+ A   F EM    L P+  I+ ++IHG
Sbjct: 295 FRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHG 354

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +S+ G+ +       +M    L P    Y+ L+  + K          +  M   G  PD
Sbjct: 355 HSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            ITY  LI  F   G ++      K M    + L      A++      G +   E+  +
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            +L  R  +K D V           M       GD                        +
Sbjct: 475 EML--RAGIKPDDV-------TYTMMMDAFCKKGD------------------------A 501

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
             G   +++EM+S     +V T N++L    K+   K+  +LL  +    V PD +T   
Sbjct: 502 QTGF-KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNT 560

Query: 424 LYDA 427
           L + 
Sbjct: 561 LLEG 564



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 40/74 (54%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C++G  +   +  +EM+     PS+  YN +++G  K+G+   A + L+ M  + + P 
Sbjct: 495 FCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPD 554

Query: 209 SDTYDGLIQAYGKY 222
             TY+ L++ + ++
Sbjct: 555 DITYNTLLEGHHRH 568


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EGL+  A+    +M     KP++  Y  ++ G+ K+GK +EA   LNEM    L P + 
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            ++ LI A+ K     E     + M   GC PD  T+N LI        +K      + M
Sbjct: 461 GFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM 520

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
           +++ +   + T   +++A++  G + +  K    ++   +PL E
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 13/235 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+E  + EAV  F+EM     KP +  +NS+I G  ++ +   AL  L +M    
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   + TY+ LI A+ +     E    +  M   G   D ITYN LI+    AG + +  
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 265 GTYKSMLTKRMHLRSSTMVAIL-DAYMNFGMLDKMEKFYKRL-LNSRTP-------LKED 315
             ++ ML +  H  S+    IL +     GM+++  +F K + L   TP       L   
Sbjct: 585 SLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR--LLSHACLLSHRGID 368
           L R    +     MF +L   G    +    T + W  +   +  ACLL   GI+
Sbjct: 644 LCRA-GRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIE 697



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 10/289 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++   C    ++ A+   ++M      P+  IY ++IH  SK  + NEAL  L E
Sbjct: 218 FTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M  M   P ++T++ +I    K+   +E    +  M + G +PD ITY  L+      G 
Sbjct: 278 MFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR 337

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-R 318
           +   +  +  +    + + ++    ++  ++  G LD  +     ++ S   + +     
Sbjct: 338 VDAAKDLFYRIPKPEIVIFNT----LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREME 375
            L   Y K  +     ++  D+ ++  +  +     L+   C L    ID   +V+ EM 
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK--IDEAYNVLNEMS 451

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +  ++ N    N ++ A+ K         +  E+P +  KPD+ T   L
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 39/273 (14%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSP 207
           LC+ G ++ A   F  +     KP + I+N++IHG+   G+ ++A   L++M     + P
Sbjct: 332 LCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 387

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              TY+ LI  Y K  +       L  M+  GC P+  +Y +L+  F   G +       
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M    +   +     ++ A+     + +  + ++ +   R   K D       VY  N
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM--PRKGCKPD-------VYTFN 498

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
            + S L ++ +                 + HA  L        +R+M S  V  N  T N
Sbjct: 499 SLISGLCEVDE-----------------IKHALWL--------LRDMISEGVVANTVTYN 533

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            ++ A+L+  + K  R L++E+  +    D +T
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEIT 566



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N ++   ++   C+ G ++EA     EM    LKP+   +N +I  + K  +  EA+   
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM      P   T++ LI    +          L+ M  +G   + +TYN LI  F   
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           G +K        M+ +   L   T  +++      G +DK    ++++L
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G++EEAV   +EM      P +  +NS+I+G  + G+  + L    +++   
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           + P + T++ L+    K     +  + L     DG  P+H T+++L+Q       L R
Sbjct: 665 IPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 118 RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +  +IP+  ++++ +     K  +  FNS  +I  LCE   ++ A+   ++M    +  +
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNS--LISGLCEVDEIKHALWLLRDMISEGVVAN 528

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              YN++I+ + + G+  EA   +NEM          TY+ LI+   +    D+     +
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M  DG +P +I+ N+LI     +G+++      K M+ +       T  ++++     G
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648

Query: 294 MLDKMEKFYKRLLNSRTP 311
            ++     +++L     P
Sbjct: 649 RIEDGLTMFRKLQAEGIP 666



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 34/286 (11%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M    + P+L  +  ++  +  + + + AL  L +M +    P S  Y  LI 
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIH 260

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           +  K    +E    L+ M L GC PD  T+N +I      GL K       + +  RM +
Sbjct: 261 SLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI-----LGLCKFDRINEAAKMVNRMLI 315

Query: 278 RSSTMVAILDAYM-----NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           R      I   Y+       G +D  +  + R+      +   L+              R
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV-------THGR 368

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-------RGIDS----VVREMESAKVRW 381
           LDD      ++   +++V    ++   C  +         G+      V+ +M +   + 
Sbjct: 369 LDD------AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           NV +  I++  + K+        +L+E+    +KP+ V    L  A
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           + S ++E     +I  LC  G +++A   F++M      PS    N +I+G  + G   E
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEE 617

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A+ F  EM     +P   T++ LI    +    ++     + ++ +G  PD +T+N L+ 
Sbjct: 618 AVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677

Query: 253 EFACAGLL 260
                G +
Sbjct: 678 WLCKGGFV 685


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 117 SRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           +R       F +W+++     K  I  +N   ++   C+ G M++A+   + +E   L P
Sbjct: 238 ARGGDFTAAFKVWEDMVSAGLKPDIVIYNI--LVHAFCKAGRMDKALGVLENIEANRLLP 295

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++E Y SI+ GY K G   +AL   + +K   L P   +Y+ L+    K +  +   + L
Sbjct: 296 TIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 355

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M  +G  P+  +Y  L + +A AG +++  G ++ M  + + +      A+L A    
Sbjct: 356 NEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 415

Query: 293 GMLDKMEKFYKRLLNS 308
           G + +  + ++++ ++
Sbjct: 416 GAMQRAAEVFQQITDA 431



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 12/294 (4%)

Query: 158 AVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           A RA F+ M    +KP++ IY S+IH Y++      A+    EM    +      +  +I
Sbjct: 35  AARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSII 94

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y      +  +   +  K +   P  I YN ++Q +  AG ++ +E     M  +   
Sbjct: 95  SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQ 154

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-NYMFSRLDD 335
                   +L+ +      +K   F+ RL              + +++ K   M   LD 
Sbjct: 155 GNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDI 214

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVREMESAKVRWNVTTANIIL 390
           L +     +   ++++ + +  +A     RG D      V  +M SA ++ ++   NI++
Sbjct: 215 LEEMDKHGVSPNKMIYAMIMDGYA-----RGGDFTAAFKVWEDMVSAGLKPDIVIYNILV 269

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            A+ K         +L  +    + P I T   + D    G +   ALE++ RI
Sbjct: 270 HAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRI 323



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R+  + + F M++ ++K    I+      ++   C+ G M+ A   FQ++    LK + 
Sbjct: 378 ARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNR 437

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y +++ G+++ G+ ++A   LN+M++      +  Y   I+A  +    +E+   L +
Sbjct: 438 ITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAV 497

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           M+      +  TY  LI  +  A    +    Y+      + L S+
Sbjct: 498 MREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSA 543


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 12/361 (3%)

Query: 115 NSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +S +S +   +F  M  +  +  +  +NS  ++  LC+ G   EA + F  M    LKP 
Sbjct: 89  SSGQSEKAIGIFRKMCSDGIEPDVVTYNS--LMDYLCKNGKCTEARKIFDSMVKRGLKPD 146

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +++HGY+  G   E    L  M +  +      ++ LI AY K +  DE+ +   
Sbjct: 147 ITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFS 206

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+  G +P+ + Y  +I      G L      ++ M+ K +        +++ A   + 
Sbjct: 207 KMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYD 266

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
             +K E+    +L+            + +   K         L D L       +++   
Sbjct: 267 KWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYS 326

Query: 354 RLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            L+   CL     G   ++  M S  ++ +  T + ++  Y K+   +    L  E+ + 
Sbjct: 327 TLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESN 386

Query: 413 HVKPDIVTIGI----LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
            V PDI+T  I    L+  RR       A E++ RI      +E++T  ++L  + K + 
Sbjct: 387 GVNPDIITYNIILHGLFRTRRTA----AAKELYARITESGTQLELSTYNIILMDFAKTNS 442

Query: 469 L 469
           L
Sbjct: 443 L 443



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 114/305 (37%), Gaps = 13/305 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +NS  II  L +   M+ A+     M    + P+   YNSI+HGY   G+  +A+    +
Sbjct: 49  YNS--IIAALSKAQAMDRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRK 102

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P   TY+ L+    K     E       M   G  PD  TY  L+  +A  G 
Sbjct: 103 MCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGA 162

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L  M      M+   M L       ++ AY     +D++   + ++            R 
Sbjct: 163 LVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRT 222

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRI--GRTELVWCLRLLSHACLLSHR--GIDSVVREME 375
           + +   K     RLDD   +    I  G T  V     L HA     +    + ++ E+ 
Sbjct: 223 VIDGLCK---LGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEIL 279

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
              +  N+   N IL +  K       + L   L    V PD++T   L D   +     
Sbjct: 280 DQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMD 339

Query: 436 GALEM 440
           GA+++
Sbjct: 340 GAMKL 344



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 4/182 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  L +EG +++A   + EM    + P    YNSII   SK    + A+  L  M    
Sbjct: 17  IIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVM---- 72

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y      ++     + M  DG  PD +TYN L+      G      
Sbjct: 73  VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEAR 132

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM+ + +    +T   +L  Y + G L +M      ++ +   L   +   L   Y
Sbjct: 133 KIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAY 192

Query: 325 IK 326
            K
Sbjct: 193 TK 194



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P +  YN+II G  K G  ++A +  +EM +  +SP + TY+ +I A  K +  D     
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
           L +M +    P+  TYN ++  +  +G  ++  G ++ M +  +     T  +++D    
Sbjct: 69  LTVMVM----PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDL 316
            G   +  K +  ++  +  LK D+
Sbjct: 125 NGKCTEARKIFDSMV--KRGLKPDI 147


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 109 VIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           VI  L N  R+ +   +F+ M  N  + R   +N+  ++    + GL+ +A     EME 
Sbjct: 312 VIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNA--LLRGYVKAGLLRDAEFVVSEMER 369

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             + P+ + Y+ +I  Y    ++  A + L EM+  N+ P +  +  ++ +Y     + +
Sbjct: 370 SGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQK 429

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L+ M+  G  PD I YN+LI  F     L     T+  ML++ +   + T   ++D
Sbjct: 430 TFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVD 489

Query: 288 AYMNFGMLDKMEKFYKRLL 306
            +   G  D+ E+ ++ ++
Sbjct: 490 CHCKAGKHDRAEELFEEMM 508



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 34/267 (12%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           + ++E++   L+  ++++N II G++K G  ++AL FL  ++   LS ++ T   +I   
Sbjct: 257 KIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGL 316

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
           G     +E +   + M+ +G  P    YN L++ +  AGLL+  E     M    +    
Sbjct: 317 GNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNE 376

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
            T   ++DAY N           +R  ++R  LKE    + + V    Y+FSR+      
Sbjct: 377 QTYSLLIDAYGN----------AERWESARIVLKE---MEASNVQPNAYVFSRI------ 417

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
           LAS   + E  W             +    V+REME + VR +    N+++  + K    
Sbjct: 418 LASYRDKGE--W-------------QKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCL 462

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYD 426
            H       + +  ++PD +T   L D
Sbjct: 463 DHAMATFDRMLSEGIEPDTITWNTLVD 489



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 125/280 (44%), Gaps = 15/280 (5%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A    +EME   ++P+  +++ I+  Y   G++ +    L EM++  + P    Y+ L
Sbjct: 393 ESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVL 452

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  +GK+   D        M  +G  PD IT+N L+     AG   R E  ++ M+ K  
Sbjct: 453 IDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKG- 511

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLV--RKLAEVYIKNYMFSR 332
           +L  +T   I+    +FG  ++ +     L N R+  L  + V    L ++Y K+  F  
Sbjct: 512 YLPCNTTFNIM--INSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDD 569

Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGID----SVVREMESAKVRWNVTTAN 387
             +  DD+ A+ +  +  ++   L ++A     RG+     S    M    ++ ++   N
Sbjct: 570 AIECLDDMKAAGLKPSSTMYNALLNAYA----QRGLSDQAVSAFWAMRDDGLKPSLLALN 625

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++ A+ K +      V+L  +    +KPD+VT   L  A
Sbjct: 626 SLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKA 665



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++    + GL ++AV AF  M    LKPSL   NS+I+ + K  +  EA + L  MKE +
Sbjct: 592 LLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKEND 651

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           L P   TY  L++A    + +D++    + M L GC+PD
Sbjct: 652 LKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPD 690



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 66/134 (49%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I +  + G  ++A+    +M+   LKPS  +YN++++ Y++ G  ++A+   
Sbjct: 550 NAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAF 609

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M++  L P     + LI A+GK +   E  + L+ MK +   PD +TY  L++     
Sbjct: 610 WAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILV 669

Query: 258 GLLKRMEGTYKSML 271
               ++   Y+ M+
Sbjct: 670 EKFDKVPSVYEEMI 683



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 137/326 (42%), Gaps = 14/326 (4%)

Query: 109 VIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQE 164
           +IR  +KN+  +  I Q   +++ I++ ++ E + Q    II    + G +++A+     
Sbjct: 240 IIRSLMKNNRANSSILQ--KIYREIDRDKL-EVDVQLWNDIIVGFAKAGDLDKALEFLGV 296

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++G  L        ++I G    G+  EA     EM++  L P++  Y+ L++ Y K  +
Sbjct: 297 VQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGL 356

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             + +  +  M+  G  P+  TY+LLI  +  A   +      K M    +   +     
Sbjct: 357 LRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSR 416

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK----NYMFSRLDDLGDDL 340
           IL +Y + G   K  +  + + +S           L + + K    ++  +  D +   L
Sbjct: 417 ILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRM---L 473

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
           +  I    + W   +  H     H   + +  EM         TT NI++ ++   + + 
Sbjct: 474 SEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWD 533

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYD 426
            ++ LL+ + ++ + P+ VT   L D
Sbjct: 534 DVKNLLTNMRSQGLLPNAVTYTTLID 559



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 54/121 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G  + A   F+EM      P    +N +I+ +    ++++    L  M+   L P +
Sbjct: 492 CKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNA 551

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI  YGK   +D+   CL  MK  G  P    YN L+  +A  GL  +    + +
Sbjct: 552 VTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611

Query: 270 M 270
           M
Sbjct: 612 M 612



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/296 (18%), Positives = 122/296 (41%), Gaps = 13/296 (4%)

Query: 130 KNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           K +E S +  N +   +I+    ++G  ++  +  +EME   ++P    YN +I  + K 
Sbjct: 400 KEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKF 459

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              + A+   + M    + P + T++ L+  + K   +D  +   + M   G  P + T+
Sbjct: 460 NCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTF 519

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYK 303
           N++I  F        ++    +M ++ +   + T   ++D Y   G  D     ++    
Sbjct: 520 NIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKA 579

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
             L   + +   L+   A+  + +   S    + DD     G    +  L  L +A    
Sbjct: 580 AGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDD-----GLKPSLLALNSLINAFGKD 634

Query: 364 HRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            R +++  V++ M+   ++ +V T   ++ A + ++ F  +  +  E+      PD
Sbjct: 635 RRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPD 690


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +Q+  + D+++ +++     + F    +I  L   G ++EAV  F+E+E    KP +  Y
Sbjct: 495 KQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISY 554

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM--- 234
           NS+I+   K G  +EA +   EM++  L+P   TY  LI+ +GK    D+++M   +   
Sbjct: 555 NSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT---DKVEMARSLFDR 611

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           M   GC P+ +TYN+L+     AG        Y  +  + +   S T  AILD
Sbjct: 612 MITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSIT-YAILD 663



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR   + F+++  +  +  +++ F    ++  L ++  ++ + + F++M+     P   
Sbjct: 251 RSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEY 310

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    K+G+  E+L    EM     +P    Y+ +IQA  K  M D+  +    M
Sbjct: 311 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 370

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRME 264
             + C P+  TY++++      G L R++
Sbjct: 371 IKNNCRPNEFTYSIILNVLVAEGQLGRLD 399



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I    ++GK  EA+    E++  +  P   +Y+ LI   GK
Sbjct: 504 YEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGK 563

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               DE  M    M+  G +PD +TY+ LI+ F     ++     +  M+T+       T
Sbjct: 564 NGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVT 623

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL 305
              +LD     G   +    Y +L
Sbjct: 624 YNILLDCLERAGRTAETVDLYAKL 647



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN+     ++  L + G   EA R F  M  F      + Y S++    + GK  EA+  
Sbjct: 409 INKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIEL 468

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+++ E  +S  +  Y+ ++   GK K    +    + MK DG  PD  TYN+LI     
Sbjct: 469 LSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGR 528

Query: 257 AGLLK 261
            G +K
Sbjct: 529 VGKVK 533



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 37/294 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           + A   + EM     +  +  YN ++   +K  + + +     +MK  + +P   TY  +
Sbjct: 256 DRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 315

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML---T 272
           I+  GK    +E     + M   GC+P+ I YN +IQ  + +G++ +    + +M+    
Sbjct: 316 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNC 375

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR---KLAEVYIKNYM 329
           +      S ++ +L A    G LD++ +   + +N    +   LVR   KL      + +
Sbjct: 376 RPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKS--IYAYLVRTLSKLGHSSEAHRL 433

Query: 330 FSRL---DDLGDDLA--------SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           F  +    D GD  A         R G+T  V  + LLS    +  +GI +         
Sbjct: 434 FCNMWSFHDGGDRDAYISMLESLCRGGKT--VEAIELLSK---VHEKGIST--------- 479

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
              +    N +L    K+K   HL  L  ++      PDI T  IL  +  R+G
Sbjct: 480 ---DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVG 530



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 93  QILQHDGDWTKDHFWA-VIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLC 150
           ++L+    +     +A ++R L     S +  ++F +MW   +    + + S  ++  LC
Sbjct: 400 EVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYIS--MLESLC 457

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             G   EA+    ++    +     +YN+++    K+ + +       +MK+    P   
Sbjct: 458 RGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIF 517

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ LI + G+     E     + ++   C PD I+YN LI      G +      +  M
Sbjct: 518 TYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEM 577

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             K ++    T   +++    FG  DK+E
Sbjct: 578 QDKGLNPDVVTYSTLIEC---FGKTDKVE 603


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 8/183 (4%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           Q+FD  +     R N      +I   C    ++ A+  + +M    +KP L +YN++++G
Sbjct: 314 QLFDEMQQ-RGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             K+G  N+A   ++EM+ + + P   TY  LI  Y K    +      K M  +G   D
Sbjct: 373 LCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY-------MNFGMLD 296
           ++ +  LI  F   G ++  E T + M+   M    +T   ++D Y       M F +L 
Sbjct: 433 NVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLK 492

Query: 297 KME 299
           +M+
Sbjct: 493 EMQ 495



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 129/312 (41%), Gaps = 36/312 (11%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +SR + + F + K +E++RI  + F    +I  LC+EG ++ A + F EM+   L+P+  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            + ++I G  +  + + A+   ++M  M + P    Y+ L+    K    ++    +  M
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           ++ G  PD ITY  LI  +   G L+      K M  + + L +    A++  +   G +
Sbjct: 390 RMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
              E+  + ++ +     +     + + Y K                  G  ++ + L  
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKK-----------------GNVKMGFKL-- 490

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
                          ++EM+    +  V T N+++    K    K+  +LL  +    V 
Sbjct: 491 ---------------LKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT 535

Query: 416 PDIVTIGILYDA 427
           PD +T  IL + 
Sbjct: 536 PDDITYNILLEG 547



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 17/292 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG + +A   F E+    L+P+   +N++I+G  K    +E       M+E  
Sbjct: 229 LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR 288

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI    K    D  +     M+  G  P+ IT+  LI     +  +    
Sbjct: 289 IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAM 348

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
            TY  MLT  +         +L+     G ++K  K    +      +K D +    L +
Sbjct: 349 NTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM--RMVGMKPDKITYTTLID 406

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-------RGIDSVVREME 375
            Y K        DL   +  R G  E    L  ++   L+S        R  +  +REM 
Sbjct: 407 GYCKE------GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            A ++ +  T  +++  Y K  + K    LL E+     KP ++T  +L + 
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G ++   +  +EM+    KP +  YN +++G  K G+   A + L  M  + 
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLG 533

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           ++P   TY+ L++ + K    +++   LK+    G   D+  Y  L+ E+
Sbjct: 534 VTPDDITYNILLEGHCKNGKAEDL---LKLRNEKGLIVDYAYYTSLVSEY 580


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 3/199 (1%)

Query: 112 FLKNSSRSRQIP---QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           FL+   R+ Q+    +VFD  +      +NE++   +I  LC+ G ++       E+   
Sbjct: 191 FLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRA 250

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L+P++  YN ++    K G+  EA      M++  ++P   T+  LI    + + + E+
Sbjct: 251 GLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEV 310

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            + L+ M+  G SP+ + YN LI      G   +    +  M+ K+M   + T   I  A
Sbjct: 311 GIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKA 370

Query: 289 YMNFGMLDKMEKFYKRLLN 307
               G +++ E+  + +L+
Sbjct: 371 LCKEGEMERAERILEDMLS 389



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            R+  I    D  + ++ + I   N     ++  +C  GL+EEA   F +     +   +
Sbjct: 618 GRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGV 677

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y  +I GY K+GK  EA+ +  EM+   +SP   TY  L+ AY K    +E       
Sbjct: 678 IGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDE 737

Query: 235 MKLDGCSPDHITYNLLI 251
           M   G  PD+ITY  LI
Sbjct: 738 MVGSGVIPDNITYGTLI 754



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 2/192 (1%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           K+S     I    DM +   K  +  FN+  ++   C  G MEE      +M+   L+P 
Sbjct: 514 KDSKMEEAIKLHGDMTRRGFKPDLFTFNT--LLHAYCNLGKMEETFHLLDQMKTEGLQPD 571

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  Y +II G+ K     +A  +L E+ +  L P    Y+ LI  YG+          ++
Sbjct: 572 IVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVE 631

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            MK +G  P ++TY  L+     AGL++  +  +       + L       ++  Y   G
Sbjct: 632 TMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLG 691

Query: 294 MLDKMEKFYKRL 305
            + +   +++ +
Sbjct: 692 KMVEAVAYFEEM 703



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 38/277 (13%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++  MEEA++   +M     KP L  +N+++H Y  +GK  E    L++MK   L P  
Sbjct: 513 CKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDI 572

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  +I  + K K   +    L  +   G  P+   YN LI  +   G +       ++
Sbjct: 573 VSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVET 632

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M +  +   + T  +++    + G++++ +  + +        +E+ V            
Sbjct: 633 MKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQ-------ARENNV------------ 673

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--REMESAKVRWNVTTAN 387
                DLG      IG T ++         C L  + +++V    EM S  +  N  T  
Sbjct: 674 -----DLG-----VIGYTIMI------QGYCKLG-KMVEAVAYFEEMRSRGISPNKLTYT 716

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++ AY K  + +    L  E+    V PD +T G L
Sbjct: 717 TLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTL 753



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/336 (19%), Positives = 130/336 (38%), Gaps = 3/336 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I  L    R  ++  V    + +  S  NE    ++IG  C +G   +A+R F EM
Sbjct: 294 FGILINGLARGERFGEVGIVLQEMEQLGVSP-NEVIYNELIGWHCRKGHCSQALRLFDEM 352

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ-AYGKYKM 224
               +KP+   YN I     K G+   A   L +M  + ++     ++ ++     + + 
Sbjct: 353 VLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRR 412

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            + +      M   G  P+       ++E    G  +   G +   L K + +  +T  A
Sbjct: 413 LESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNA 472

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           ++        + +  K  + +LN    L       +     K+        L  D+  R 
Sbjct: 473 LIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRG 532

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
            + +L     LL   C L        ++ +M++  ++ ++ +   I+  + K KD +  +
Sbjct: 533 FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAK 592

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             L+EL  R +KP++     L        D +GA++
Sbjct: 593 EYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAID 628



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +IG     G +  A+ A + M+   ++P+   Y S+++     G   EA    
Sbjct: 606 NVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIF 665

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++ +E N+      Y  +IQ Y K     E     + M+  G SP+ +TY  L+  ++ +
Sbjct: 666 SQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKS 725

Query: 258 G-------LLKRMEG--------TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           G       L   M G        TY +++ +   + S        A ++ G L K ++ Y
Sbjct: 726 GNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMY 785

Query: 303 KRLLNS 308
             L N 
Sbjct: 786 NILSNG 791



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 112/279 (40%), Gaps = 13/279 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  +EAV  + +     L  +L   N++IHG  +     EA   +  M    +   
Sbjct: 442 LCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELD 501

Query: 209 SDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           S TY+ +I+   K  KM + I +   M +  G  PD  T+N L+  +   G   +ME T+
Sbjct: 502 SITYNIMIRGCCKDSKMEEAIKLHGDMTR-RGFKPDLFTFNTLLHAYCNLG---KMEETF 557

Query: 268 ---KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M T+ +     +   I+D +     + K +++   L++        +   L   Y
Sbjct: 558 HLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGY 617

Query: 325 IKNYMFSRLDDLGDDLASR-IGRTELVW--CLRLLSHACLLSHRGIDSVVREMESAKVRW 381
            +N   S   D  + + S  I  T + +   +  + HA L+      ++  +     V  
Sbjct: 618 GRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEE--AKTIFSQARENNVDL 675

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            V    I++  Y K+           E+ +R + P+ +T
Sbjct: 676 GVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 714


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 124 QVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F++++ +E +   ++    + +I  L + G ++ A + FQEM+    +PSL I++S++
Sbjct: 245 KAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLV 304

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               K G+   ++    EM+ + L P +  Y  LI++Y K    D        MK+ G  
Sbjct: 305 DSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFR 364

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+   Y L+I+  A +G L      ++ M         ST  ++L+ +   G +D   K 
Sbjct: 365 PNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKL 424

Query: 302 YKRLLNS 308
           Y  + N+
Sbjct: 425 YNSMTNA 431



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  + + G +E +++ + EM+G  L+PS  +Y S+I  Y+K GK + AL   +EMK   
Sbjct: 303 LVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAG 362

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y  +I+++ K    D      + M+  G  P   TY+ L++  A +G +    
Sbjct: 363 FRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAM 422

Query: 265 GTYKSMLTKRMHLRSSTMVAIL 286
             Y SM    +    ST  A+L
Sbjct: 423 KLYNSMTNAGLRPGLSTYTALL 444



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II    + G ++ A+  F++ME     P+   Y+S++  ++  G+ + A+   N M    
Sbjct: 373 IIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAG 432

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L P   TY  L+      K+ D     L  MK  G S D    ++L+
Sbjct: 433 LRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSASDVLM 479


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 139/319 (43%), Gaps = 44/319 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C++G +E A + F++++     P+L+ + S+++G+ K+G F    L L EMK+  
Sbjct: 249 LIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRG 308

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDM--CLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           LS     Y+ +I A  +YK+  +I     LK M  + C PD +TYN LI  F   G ++ 
Sbjct: 309 LSVNVQMYNNIIDA--RYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEE 366

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
            E   +  + + +     T   ++  Y   G   K   +   +  S + L+ D++   A 
Sbjct: 367 AEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEM--STSGLEVDMISYGAL 424

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
           ++            G  +A  +  T L    R++       +RGI      +  A +   
Sbjct: 425 IH------------GLVVAGEV-DTALTIRDRMM-------NRGI------LPDANIY-- 456

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
               N+++    K       +V+L+E+  +++ PD      L D    GF   G L+  K
Sbjct: 457 ----NVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVD----GFIRHGNLDEAK 508

Query: 443 RIGFLFKTVEINTDPLVLA 461
           ++  L   +E   DP V+ 
Sbjct: 509 KLFQLI--IEKGLDPGVVG 525



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 17/306 (5%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +M +N  +  +  +N+  +I   C  G +EEA +  ++     L P+   Y  ++HGY K
Sbjct: 338 EMSENCCEPDLVTYNT--LINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCK 395

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPD 243
            G++ +A  +L EM    L     +Y  LI       +  E+D  L +   M   G  PD
Sbjct: 396 QGEYTKATDYLIEMSTSGLEVDMISYGALIHGL---VVAGEVDTALTIRDRMMNRGILPD 452

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
              YN+L+      G L   +     ML + +   +     ++D ++  G LD+ +K ++
Sbjct: 453 ANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQ 512

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHAC 360
            ++     L   +V     V IK +  S + D   L  D   R      ++    +    
Sbjct: 513 LII--EKGLDPGVVG--YNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGY 568

Query: 361 LLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           +  H    +  +   M     + NV T   ++  Y +  + K    L S + +  +KP +
Sbjct: 569 VKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSV 628

Query: 419 VTIGIL 424
           VT  IL
Sbjct: 629 VTYSIL 634



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA + FQ +    L P +  YN +I G+SK G  + A+L +++M+  +  P   T+
Sbjct: 502 GNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTF 561

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I  Y K    + +     +M    C P+ +TY  LI  +   G  K  E  +  M +
Sbjct: 562 STIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRS 621

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYK-RLLNSRTP 311
             +     T   ++ ++     L K   +++  L+N  TP
Sbjct: 622 HGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTP 661



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G+M+ A+    +M      P +  +++II GY K    N  L     M + N  P   
Sbjct: 535 KSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVV 594

Query: 211 TYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           TY  LI  Y   G+ KM +++     MM+  G  P  +TY++LI  F     L +    +
Sbjct: 595 TYTSLINGYCRKGETKMAEKL---FSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYF 651

Query: 268 KSMLTKRMHLRSSTMVAILDAYMN 291
           + ML  +     +    +++ + N
Sbjct: 652 ELMLINKCTPNDAAFHYLVNGFTN 675



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II    ++  M   ++ F  M     KP++  Y S+I+GY + G+   A    + 
Sbjct: 559 FTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSM 618

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           M+   L P   TY  LI ++ K     +     ++M ++ C+P+   ++ L+  F 
Sbjct: 619 MRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFT 674


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 40/323 (12%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC E  M E      EM    L+P++  Y +I+  + K  +   A   L  M  
Sbjct: 173 NAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVS 232

Query: 203 MNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           M  +P   T+  L++ + +  K++D + M   M+  +G +P  I+YN+LI+   C G LK
Sbjct: 233 MGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVD-EGWAPSTISYNVLIRGLCCIGDLK 291

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
                + SM    +   ++T   ++D + N G LD     +  + +S       +   + 
Sbjct: 292 GALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMI 351

Query: 322 EVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSHAC 360
           +V  K  MF + + L D +                       R+GR   V+   +  + C
Sbjct: 352 DVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVF-HGMRRNGC 410

Query: 361 ---------LL-------SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                    LL       +H+   ++V EM +     ++ T N ++    +M   KH  +
Sbjct: 411 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAML 470

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           LL  +  + ++PD  T   +  A
Sbjct: 471 LLGRMMVQGIQPDAFTFNAIIHA 493



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 48/117 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +IG LC+ G +  A+  F  M      P+   YN ++HG  + G   +A   +
Sbjct: 378 NTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMV 437

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            EM          TY+ +I    +  M     + L  M + G  PD  T+N +I  +
Sbjct: 438 IEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 494



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           V +M  N  +  +  +N+  +I  LC+  + + A+     M    ++P    +N+IIH Y
Sbjct: 437 VIEMLNNGFELSLVTYNT--VINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 494

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPD 243
            K GK + A   L +M  +N       Y  LI +   + K+ + +   LKM+  +G  P+
Sbjct: 495 CKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKML-YEGICPN 553

Query: 244 HITYNLLIQEF 254
             T+N+L++  
Sbjct: 554 EATWNVLVRAI 564



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+    +++  L  EG  ++A     EM     + SL  YN++I+   ++     A+L L
Sbjct: 413 NDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLL 472

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    + P + T++ +I AY K          L  M    C  + + Y +LI E    
Sbjct: 473 GRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQ 532

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA-YMNFGMLDKMEKF 301
           G L         ML + +    +T   ++ A + N G +  +  F
Sbjct: 533 GKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLF 577



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALK-PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IG     G  + A++ F        + P + +YN ++    +       +   + M++  
Sbjct: 40  IGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAG 99

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI+A  +    D     L  M   GC PD +++  ++      G ++   
Sbjct: 100 VDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEAR 159

Query: 265 G 265
           G
Sbjct: 160 G 160


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 40/323 (12%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC E  M E      EM    L+P++  Y +I+  + K  +   A   L  M  
Sbjct: 226 NAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVS 285

Query: 203 MNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           M  +P   T+  L++ + +  K++D + M   M+  +G +P  I+YN+LI+   C G LK
Sbjct: 286 MGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVD-EGWAPSTISYNVLIRGLCCIGDLK 344

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
                + SM    +   ++T   ++D + N G LD     +  + +S       +   + 
Sbjct: 345 GALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMI 404

Query: 322 EVYIKNYMFSRLDDLGDDL---------------------ASRIGRTELVWCLRLLSHAC 360
           +V  K  MF + + L D +                       R+GR   V+   +  + C
Sbjct: 405 DVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVF-HGMRRNGC 463

Query: 361 ---------LL-------SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                    LL       +H+   ++V EM +     ++ T N ++    +M   KH  +
Sbjct: 464 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAML 523

Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
           LL  +  + ++PD  T   +  A
Sbjct: 524 LLGRMMVQGIQPDAFTFNAIIHA 546



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 48/117 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +IG LC+ G +  A+  F  M      P+   YN ++HG  + G   +A   +
Sbjct: 431 NTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMV 490

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            EM          TY+ +I    +  M     + L  M + G  PD  T+N +I  +
Sbjct: 491 IEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 547



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           V +M  N  +  +  +N+  +I  LC+  + + A+     M    ++P    +N+IIH Y
Sbjct: 490 VIEMLNNGFELSLVTYNT--VINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 547

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPD 243
            K GK + A   L +M  +N       Y  LI +   + K+ + +   LKM+  +G  P+
Sbjct: 548 CKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKML-YEGICPN 606

Query: 244 HITYNLLIQEF 254
             T+N+L++  
Sbjct: 607 EATWNVLVRAI 617



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+    +++  L  EG  ++A     EM     + SL  YN++I+   ++     A+L L
Sbjct: 466 NDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLL 525

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             M    + P + T++ +I AY K          L  M    C  + + Y +LI E    
Sbjct: 526 GRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQ 585

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA-YMNFGMLDKMEKF 301
           G L         ML + +    +T   ++ A + N G +  +  F
Sbjct: 586 GKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLF 630



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALK-PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IG     G  + A++ F        + P + +YN ++    +       +   + M++  
Sbjct: 93  IGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAG 152

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ LI+A  +    D     L  M   GC PD +++  ++      G ++   
Sbjct: 153 VDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEAR 212

Query: 265 G 265
           G
Sbjct: 213 G 213


>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
          Length = 542

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 40/302 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +LC+   ++EA      M    + P++  Y +I+HGY K G+  EA   L+ M ++ 
Sbjct: 155 LIWILCDSQRLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVLEAERLLDTMIQVG 214

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   +Y  LIQ   +   + +++  L   +  G +P+ +TYN+ +      G L    
Sbjct: 215 CAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAF 274

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                M ++ +++   T+  + D      M  +       LL     L  D+     +V+
Sbjct: 275 RQVDVMHSRGVYMTIETVNILFDCLCRGSMFSEALT----LLECSEELNWDV-----DVF 325

Query: 325 IKNYMFSRLDDLGD---------DLASR-IGRT--ELVWCLRLLSHA-------CLLSHR 365
             N M SRL D GD         DL  + IG         +R L  A       CLL ++
Sbjct: 326 CYNTMMSRLCDTGDIARVLKLLVDLVKKGIGPDMFSFTIAIRSLCRAGKFKVAKCLLDNK 385

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
           GI+            ++V   N ++       +   +     ++ +R+V P+  TIG++ 
Sbjct: 386 GIE------------YDVVAFNTLIHGLCMAGELHEMLQTYMDMTSRNVFPNNFTIGMVI 433

Query: 426 DA 427
           D+
Sbjct: 434 DS 435


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 34/283 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ EA   + EM    + P++  Y ++I+G+  +G   EA+  LNEMK  N
Sbjct: 215 IIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKN 274

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI A GK        + L +M      PD +TYN L+  +     +K  +
Sbjct: 275 INPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAK 334

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + SM    +     +   ++D      M+D+    ++ +             K   V 
Sbjct: 335 YVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEM-------------KHKNVI 381

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
                F+ L     D   + GR   VW                  +V +M       +V 
Sbjct: 382 PNTITFNSL----IDGLCKSGRIAYVW-----------------DLVDKMRDRSQLADVI 420

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           T + ++ A  K         L  ++ T+ ++PD+ T  IL D 
Sbjct: 421 TYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDG 463



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+  +++EA+  F+EM+   + P+   +NS+I G  K G+       +++M++ +
Sbjct: 355 MIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRS 414

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY  LI A  K    D+     K M      PD  TY +LI      G LK  +
Sbjct: 415 QLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQ 474

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  HL   T   ++  +   G+ D+
Sbjct: 475 EVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDE 507



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 118 RSRQIPQVFDMWKNI-EKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S +I  V+D+   + ++S++ +      +I  LC+   +++A+  F++M    ++P + 
Sbjct: 396 KSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMY 455

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I G  K G+   A      +          TY  +I  + K  ++DE    L  M
Sbjct: 456 TYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKM 515

Query: 236 KLDGCSPDHITYNLLI 251
           + +GC P+ IT++++I
Sbjct: 516 EDNGCIPNAITFDIII 531



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 124/330 (37%), Gaps = 47/330 (14%)

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           N+A+   N M  M   P +  ++ ++ +  K + +       K +   G + D +T N+L
Sbjct: 51  NDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNIL 110

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF--------- 301
           I  F   G +        ++L +  H    T+  ++      G + K  KF         
Sbjct: 111 INCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEF 170

Query: 302 ------YKRLLNSRTPLKE-----DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                 Y  L+N    + E      L+R L E  IK  +    + + D L          
Sbjct: 171 QLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVV-MYNIIIDSLCKN------- 222

Query: 351 WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
              +L+  AC        ++  EM + ++  NV T   ++  +  M        LL+E+ 
Sbjct: 223 ---KLVGEAC--------NLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK 271

Query: 411 TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFL- 469
            +++ PD+ T  IL DA        G ++  K +  +     +  D +       G+FL 
Sbjct: 272 LKNINPDVYTFSILIDA----LGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLV 327

Query: 470 ---RYCEEVYSSLEPYSREKKRWTYQNLID 496
              ++ + V++S+          +Y  +ID
Sbjct: 328 NEVKHAKYVFNSMAQSGVTPGVQSYTIMID 357



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 141/351 (40%), Gaps = 31/351 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +++A++   ++     +     Y ++I+G  KIG+   A+  +  ++E +
Sbjct: 145 LIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERS 204

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y+ +I +  K K+  E       M      P+ +TY  LI  F   G L    
Sbjct: 205 IKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAV 264

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK----- 319
                M  K ++    T   ++DA    G +   +     ++  +  +K D+V       
Sbjct: 265 ALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMM--KAYVKPDVVTYNSLVD 322

Query: 320 ----LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVR 372
               + EV    Y+F+ +        ++ G T  V    ++    L   + +D   S+  
Sbjct: 323 GYFLVNEVKHAKYVFNSM--------AQSGVTPGVQSYTIMIDG-LCKTKMVDEAISLFE 373

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM+   V  N  T N ++    K     ++  L+ ++  R    D++T   L DA     
Sbjct: 374 EMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNC 433

Query: 433 DGTGALEMWKRIGFLFKTVEINTD----PLVLAVYGKGHFLRYCEEVYSSL 479
               A+ ++K++     T EI  D     +++    KG  L+  +EV+  L
Sbjct: 434 HLDQAIALFKKM----ITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHL 480



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +I  LC+ G ++ A   FQ +  +G+ L   +  Y  +I G+ K G F+EAL  L++M++
Sbjct: 460 LIDGLCKGGRLKIAQEVFQHLLIKGYHL--DIRTYTVMISGFCKAGLFDEALALLSKMED 517

Query: 203 MNLSPQSDTYDGLIQA 218
               P + T+D +I A
Sbjct: 518 NGCIPNAITFDIIICA 533


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 8/137 (5%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +QI  + D+++ +++     + F    +I      G ++EA++ F+E+E    KP    Y
Sbjct: 467 KQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSY 526

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM--- 234
           NS+I+   K G  +EA +   EM E  L+P   TY  LI+ +GK    D+++M  ++   
Sbjct: 527 NSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKT---DKVEMACRLFDE 583

Query: 235 MKLDGCSPDHITYNLLI 251
           M  +GC P+ +TYN+L+
Sbjct: 584 MLAEGCYPNIVTYNILL 600



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P    YN +I  + + GK +EA+    E+++ +  P + +Y+ LI   GK
Sbjct: 476 YEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGK 535

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ--------EFACAGLLKRM--EGTYKSML 271
               DE  M  K M   G +PD +TY+ LI+        E AC  L   M  EG Y +++
Sbjct: 536 NGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACR-LFDEMLAEGCYPNIV 594

Query: 272 TKRMHL----RSSTMVAILDAY 289
           T  + L    RS      +D Y
Sbjct: 595 TYNILLDCLERSGRTAEAVDLY 616



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR   + F ++  ++K    ++ F    ++  L ++  ++ A + F++M+    +P   
Sbjct: 223 RSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEY 282

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKM 234
            Y  +I    KIGK +E+L    EM     SP    Y+ +IQA    +M D+ I + LKM
Sbjct: 283 TYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKM 342

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++ + C P   TY++++   A    L +++
Sbjct: 343 VEKE-CRPSEFTYSVILHLLATERKLHKLD 371



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 10/189 (5%)

Query: 76  ALNALIQRL------NKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMW 129
           A N +IQ L      +K +   L++++ +   ++  +  ++  L    +  ++ +V ++ 
Sbjct: 318 AYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVS 377

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K      I  +    ++  L + G   EA R F  M     +   +   S++      GK
Sbjct: 378 KKYMSRSIYAY----LVRTLKKLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGK 433

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA+  L ++ E  +S  +  Y+ +  A GK K    +    + MK DG  PD  TYN+
Sbjct: 434 TTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNI 493

Query: 250 LIQEFACAG 258
           LI  F  AG
Sbjct: 494 LISSFGRAG 502



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 6/195 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           +  ++R LK    + +  ++F +MW   E+   +   S  ++  LC  G   EA+    +
Sbjct: 386 YAYLVRTLKKLGHASEAHRLFCNMWNCHERGDRDACVS--MLECLCSAGKTTEAIDLLGK 443

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           +    +     +YN++     K+ + +       +MK+    P + TY+ LI ++G+   
Sbjct: 444 IHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGK 503

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            DE     + ++     PD  +YN LI      G L      +K M  K ++    T   
Sbjct: 504 VDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYST 563

Query: 285 ILDAYMNFGMLDKME 299
           +++    FG  DK+E
Sbjct: 564 LIEC---FGKTDKVE 575


>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Brachypodium distachyon]
          Length = 598

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA      M+   + P + ++N+++ G+    +F +A     EM+  +  P +
Sbjct: 202 CRLGKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVAADRFEDAFELAREMERRDCPPNA 261

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  L+Q  G     DE+      M+  GC+PD +TY  L+  F  AG L +      +
Sbjct: 262 VSYTTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDSVTYGTLVSAFCKAGRLSQGYEFLDA 321

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           M    + +     +    A+     L++  +  +R+   R P
Sbjct: 322 MSRDALRVDPGVYLGFFVAHEKKEQLEECLELMERMRECRCP 363



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 117/287 (40%), Gaps = 41/287 (14%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  A R  +E++   L  S+  Y ++++G+ ++GK +EA   L  MK   ++P    +
Sbjct: 171 GHVAAAERLVEELQP-RLPLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVF 229

Query: 213 DGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           + L+  +    +  D  ++  +M + D C P+ ++Y  L+Q     G +  +   +  M 
Sbjct: 230 NTLLAGFVAADRFEDAFELAREMERRD-CPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMR 288

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            K     S T   ++ A+   G L +  +F   +  SR  L+ D       VY+  ++  
Sbjct: 289 RKGCAPDSVTYGTLVSAFCKAGRLSQGYEFLDAM--SRDALRVD-----PGVYLGFFV-- 339

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
                     +   + +L  CL L+                 M   +   ++   N++L 
Sbjct: 340 ----------AHEKKEQLEECLELMER---------------MRECRCPPDLGIYNVVLR 374

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
              K+ + K    L +E+    + P + T  I+ +    G  G G+L
Sbjct: 375 LSCKLGETKQAMALWNEMENSGLSPGVDTFAIMVN----GLVGQGSL 417



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 2/185 (1%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ + +E+     N  +   ++  L   G ++E +R F EM      P    Y +++ 
Sbjct: 245 AFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDSVTYGTLVS 304

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + K G+ ++   FL+ M    L      Y G   A+ K +  +E    ++ M+   C P
Sbjct: 305 AFCKAGRLSQGYEFLDAMSRDALRVDPGVYLGFFVAHEKKEQLEECLELMERMRECRCPP 364

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D   YN++++     G  K+    +  M    +     T   +++  +  G L     F+
Sbjct: 365 DLGIYNVVLRLSCKLGETKQAMALWNEMENSGLSPGVDTFAIMVNGLVGQGSLVDACSFF 424

Query: 303 KRLLN 307
           K ++ 
Sbjct: 425 KDMVG 429


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 123/309 (39%), Gaps = 39/309 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C++  +  A++ F EM    +KP++  YNS+I+G    GK NEA    
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALR 294

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    L P   T++ L+  + K KM  +       M   G +P+  TYN+LI  +   
Sbjct: 295 DQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKD 354

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             ++     Y+ ML K +    ST   ++      G L+        +      LK DL+
Sbjct: 355 ENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEM--DTKHLKADLI 412

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC--------LLSHRGIDS 369
                    N +   L + G          E+   LRLL   C        L  +  ID 
Sbjct: 413 -------TYNILIDSLCNKG----------EMKKALRLLDEMCRKGLKPSQLTYNTMIDG 455

Query: 370 VVRE------------MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
             +E            ME      NV T N+++  + K    +    LL+E+  + + P+
Sbjct: 456 YCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPN 515

Query: 418 IVTIGILYD 426
            +T  I+ +
Sbjct: 516 RMTYEIVTE 524



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 145/361 (40%), Gaps = 51/361 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY---SKIGKFNEALLFLNEMK 201
           +I  LC+ G + +A    ++M+   +  ++  YN++I GY    KIGK  +A   L EM+
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMR 228

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
              + P   T++ LI  + K K           M   G  P+ +TYN LI          
Sbjct: 229 ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI---------- 278

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RK 319
                                    +   N G +++      +++NS   LK +++    
Sbjct: 279 -------------------------NGLCNNGKVNEATALRDQMVNS--CLKPNIITHNA 311

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--REMESA 377
           L   + KN M  +  +L DD+  + G T  V    +L  A        D+    R M   
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPKQ-GITPNVTTYNILIDAYCKDENMEDAFALYRIMLGK 370

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            V  +V+T N ++    +  D +  R L+SE+ T+H+K D++T  IL D+     +   A
Sbjct: 371 GVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKA 430

Query: 438 LEMWK---RIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
           L +     R G     +  NT   ++  Y K   LR    + S +E   R     TY  L
Sbjct: 431 LRLLDEMCRKGLKPSQLTYNT---MIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 495 I 495
           I
Sbjct: 488 I 488



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G M++A+R   EM    LKPS   YN++I GY K G    AL   ++M+++ 
Sbjct: 417 LIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 TY+ LI+ + K    ++ +  L  M   G  P+ +TY ++ +E    G +  +E
Sbjct: 477 RLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIE 536

Query: 265 G 265
           G
Sbjct: 537 G 537



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G +E A     EM+   LK  L  YN +I      G+  +AL  L+EM    
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 205 LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           L P   TY+ +I  Y K   +   +++  +M K+ G   +  TYN+LI+ F     L+  
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKV-GRLANVATYNVLIKGFCKKDKLEDA 500

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK-FYKRLLNS 308
            G    ML K +     T   + +  M  G +  +E   YK  ++S
Sbjct: 501 NGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKVAVSS 546


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F    +I  L + G ++ A+   QEME  +++P+L +Y+++I G  K G  ++AL   
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +++ E  +   + TY+ LI        + E+   L  M  +   PD  T+N+LI      
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +   +G    M  +       T  A+++ Y +   + +  + + R++  +  L+ D++
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV--KRGLEPDVL 336

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSHAC---LLSHRGIDSV 370
                V I  Y  +++ D    L   +    LV  +     L+   C    +SH  +  +
Sbjct: 337 NY--NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISH--VKKL 392

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + EM  +    +V T NI++ A  K         +L  +  + VKP+IVT   + D 
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 149/388 (38%), Gaps = 53/388 (13%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K  EK  I  +N+  ++   C    + EA   F  M    L+P +  YN +I GY K 
Sbjct: 291 MSKRGEKPDIVTYNA--LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              +EA++   E+   NL P   +Y+ LI           +   L  M      PD +TY
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI      G +    G    M+ K +     T  A++D Y     ++  +  + R++ 
Sbjct: 409 NILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           S   L+ D++     V I  Y                 +TE+V        A +L     
Sbjct: 469 SG--LEPDILNY--NVLINGYC----------------KTEMV------DEAIVL----- 497

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
               +EM    +  ++ + N ++     +    H++ LL E+      PD++T  IL DA
Sbjct: 498 ---FKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDA 554

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVE-----INTDPLVLAVYGKGHFLRYCEEVYSSLEPY 482
               F  T   +  K I    + VE       T+  ++    KG  L+  E+    L  +
Sbjct: 555 ----FCKTQPFD--KAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH 608

Query: 483 SREKKRWTYQNLIDLVIKHNGKNLDGTF 510
                  TY  LI+ + K      DG+F
Sbjct: 609 GCSPNVQTYTILINALCK------DGSF 630



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 38/324 (11%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVR 160
           T   + ++I  L NS R   + ++ D M  + +   +  +N   +I  LC+EG + EA+ 
Sbjct: 369 TIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI--LIDALCKEGRILEALG 426

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
               M    +KP++  YN+++ GY      N A    N M +  L P    Y+ LI  Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K +M DE  +  K M+     PD  +YN LI      G +  ++     M          
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +LDA+      DK    +++++    P          + Y  + +   +D+L    
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWP----------DFYTNHAI---VDNLCKGE 593

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
             ++    L     LL H C                     NV T  I++ A  K   F 
Sbjct: 594 KLKMAEDALK---HLLMHGC-------------------SPNVQTYTILINALCKDGSFG 631

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
              +LLS++      PD +T  I+
Sbjct: 632 EAMLLLSKMEDNDRPPDAITFEII 655



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           D F     F K  S  RQI  V  +W +        + +  I+  LC+   ++ A  A +
Sbjct: 553 DAFCKTQPFDKAISLFRQI--VEGIWPDF-------YTNHAIVDNLCKGEKLKMAEDALK 603

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            +      P+++ Y  +I+   K G F EA+L L++M++ +  P + T++ +I
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 158/386 (40%), Gaps = 39/386 (10%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ + +  ++  LC  G +EE  R  +   G    P +  YN II GY K G    A   
Sbjct: 203 VDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRA 262

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           LNE+K   + P  +TY  LI  + K   ++ +D  L  M   G + +   +N +I     
Sbjct: 263 LNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYK 322

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF----GMLDK----MEKFYKRLL-- 306
            GL+         ML +   +     +   +  +NF    G +++    +EK  +R L  
Sbjct: 323 YGLVTEA----AEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLP 378

Query: 307 --NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
              S TPL     +K   V     +F R+ ++G+       +++LV     +    +   
Sbjct: 379 NKFSYTPLMHAYCKKGDYVKASGMLF-RIAEIGE-------KSDLVSYGAFIHGVVVAGE 430

Query: 365 RGIDSVVRE-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
             +  +VRE M    V  +    NI++    K      +++LLSE+  R+V+PD+     
Sbjct: 431 IDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFAT 490

Query: 424 LYDARRIGFDGTGALEMWKRIGFLFKT-VEINTDPLVLA----VYGKGHFLRYCEEV--Y 476
           L D    GF   G L+   +I   FK  +    DP ++     + G   F +  + +   
Sbjct: 491 LID----GFIRNGELDEAIKI---FKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCL 543

Query: 477 SSLEPYSREKKRWTYQNLIDLVIKHN 502
           + +         +TY  +ID  +K +
Sbjct: 544 NEMNSVHHAPDEYTYSTVIDGYVKQH 569



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA++ F+ +    + P +  YN++I G+ K GK  +AL  LNEM  ++ +P   TY
Sbjct: 499 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTY 558

Query: 213 DGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I  Y K + M   + M  +MMK     P+ ITY  LI  F     + R E  +  M 
Sbjct: 559 STVIDGYVKQHDMSSALKMFGQMMK-HKFKPNVITYTSLINGFCKKADMIRAEKVFSGMK 617

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +  +     T   ++  +   G  ++    ++ +L
Sbjct: 618 SFDLVPNVVTYTTLVGGFFKAGKPERATSIFELML 652



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    +I    ++  M  A++ F +M     KP++  Y S+I+G+ K      A    
Sbjct: 554 DEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVF 613

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           + MK  +L P   TY  L+  + K    +      ++M ++GC P+  T++ LI
Sbjct: 614 SGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLI 667



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 16/189 (8%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           ++K    S  +     M K+  K  +  + S  +I   C++  M  A + F  M+ F L 
Sbjct: 565 YVKQHDMSSALKMFGQMMKHKFKPNVITYTS--LINGFCKKADMIRAEKVFSGMKSFDLV 622

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDE 227
           P++  Y +++ G+ K GK   A      M      P   T+    +GL        + +E
Sbjct: 623 PNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEE 682

Query: 228 IDM----------CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            D              MM LDG       YN +I      G +   +     MLTK   +
Sbjct: 683 KDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLI 742

Query: 278 RSSTMVAIL 286
            S    A+L
Sbjct: 743 DSVCFTALL 751


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 2/186 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC E  + EA R FQ M+   + PS   YNS+IHG+ K     +AL   +E
Sbjct: 409 FTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSE 468

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M    + P   T+  LI  Y K +           M + G  PD +TY  LI        
Sbjct: 469 MTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEAN 528

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +K     Y  ML   +H    T   ++D +   G L     FY  L N++    + +V++
Sbjct: 529 MKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFY--LENNQAATGKSIVQR 586

Query: 320 LAEVYI 325
               Y+
Sbjct: 587 SCWKYV 592



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 36/280 (12%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC E  MEEA + F+ M+   + P+L  Y+++I GY K G   +A     E+    L P 
Sbjct: 278 LCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPN 337

Query: 209 SDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              +  L+  + K + +     + + M+K  G  P+   YN LI     +G +    G  
Sbjct: 338 VVVFGTLVDGFCKARELVAARSLFVHMVKF-GVDPNLYVYNCLIHGQCKSGNMLEAMGLL 396

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M +  +     T   +++       L +  + ++R+ N R          L   + K 
Sbjct: 397 SEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKE 456

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
           Y   +  DL                                    EM S+ V  N+ T +
Sbjct: 457 YNIEKALDL----------------------------------CSEMTSSGVEPNIITFS 482

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++  Y K+++ K    L  E+  + + PD+VT   L DA
Sbjct: 483 TLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDA 522



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++  + Q + ++K I  + +  N      ++   C+   +  A   F  M  F + P+L 
Sbjct: 315 KTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLY 374

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN +IHG  K G   EA+  L+EM+ +NLSP   TY  LI      +   E +   + M
Sbjct: 375 VYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRM 434

Query: 236 KLDGCSPDHITYNLLIQEFA 255
           K +   P  +TYN LI  F 
Sbjct: 435 KNERIFPSSVTYNSLIHGFC 454



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 119/279 (42%), Gaps = 25/279 (8%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +Q M    L P + IY+ +     K G  ++    L+EM  + + P    Y   I+   +
Sbjct: 221 YQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCR 280

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               +E +   ++MK+ G  P+  TY+ +I  +   G L++  G YK +L   +      
Sbjct: 281 ENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAEL------ 334

Query: 282 MVAILDAYMNFGMLDKMEKFYK-RLLNSRTPLKEDLVRKLAE--VYIKNYMFSRLDDLGD 338
               L   + FG L  ++ F K R L +   L   +V+   +  +Y+ N +       G+
Sbjct: 335 ----LPNVVVFGTL--VDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGN 388

Query: 339 DLASRIGRTEL--------VWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANI 388
            L +    +E+        V+   +L +      R  ++  + + M++ ++  +  T N 
Sbjct: 389 MLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNS 448

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++  + K  + +    L SE+ +  V+P+I+T   L D 
Sbjct: 449 LIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDG 487



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 1/180 (0%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           IR L   ++  +  ++F++ K I     N +    +I   C+ G + +A   ++E+    
Sbjct: 275 IRDLCRENKMEEAEKMFELMK-IHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAE 333

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
           L P++ ++ +++ G+ K  +   A      M +  + P    Y+ LI    K     E  
Sbjct: 334 LLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAM 393

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L  M+    SPD  TY +LI        L      ++ M  +R+   S T  +++  +
Sbjct: 394 GLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGF 453


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 145/352 (41%), Gaps = 10/352 (2%)

Query: 81  IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF 140
           +QR++   S   +I++     T   F  +I +L    +  Q  ++FD        R + +
Sbjct: 146 LQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMV-ARGCRPDVY 204

Query: 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
               II  LC+ G    A    ++ME    +P++  Y++II  + K  + NEAL   + M
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM 264

Query: 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           K   +SP   TY+ LIQ    +  + E    L  M+     PD +T+N+L+      G +
Sbjct: 265 KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKV 324

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
              +G  K+M    +     T  +++  Y     + +  K +  ++      K D+    
Sbjct: 325 SEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGC--KPDVFS-- 380

Query: 321 AEVYIKNYM-FSRLDDLGDDLASRI--GRTELVWCLRLLSHA-CLL-SHRGIDSVVREME 375
             + I  Y    R+D+        I  G T        L H  C L S R   ++ + M 
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMH 440

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +     N+ T +I+L  + K   F     L   + + + KP++V   IL DA
Sbjct: 441 TNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDA 492



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    ++   C++G   +A R F+ M+    KP+L +YN +I    K G   +A    
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +E+    L P +  Y  +I    K  + DE     + M+ DGC PD I+YN++I+ F
Sbjct: 507 SELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGF 563



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 2/176 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLN 198
           F+   +I   C+   ++EA + F EM    L P+   YN++IHG  ++G   EA  LF N
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKN 438

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
                NL P   TY  L+  + K   + +     + M+     P+ + YN+LI     +G
Sbjct: 439 MHTNGNL-PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            L+     +  +  K +   +     I++     G+LD+  + ++ +     P  E
Sbjct: 498 NLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           ++ME   L P++   + +I+ +S + + + A   L ++ ++ L P   T+  LI    K 
Sbjct: 122 KQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKV 181

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLI-------QEFACAGLLKRME 264
             + +       M   GC PD  TY  +I       +  A AGLLK+ME
Sbjct: 182 GKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKME 230



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           II  LC+EGL++EA+ AF+ ME     P    YN II G+      + A+  + EM++
Sbjct: 524 IINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRD 581


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 5/277 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++  + EA+  F  M+   + P++  YNS+I G     ++ EA   LNEM  +N
Sbjct: 51  IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 110

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T+  LI  + K     E    LK M   G  P+ +TY+ L+  ++    +    
Sbjct: 111 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEAR 170

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAE 322
             +  M+TK       +   +++ Y     + + ++ +  +++    L  D+V    L +
Sbjct: 171 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ--GLTPDIVSYNTLID 228

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRW 381
              +        DL  ++ +     +L     LL   C   +      + R M+S  ++ 
Sbjct: 229 GLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 288

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           N+   NI++ A  K ++ K  R L SEL  + ++P++
Sbjct: 289 NMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 7/212 (3%)

Query: 108 AVIRFLKNSSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           ++I+ L N SR R+   + +  M  NI     N      +I + C+EG + EA    + M
Sbjct: 85  SLIQGLCNFSRWREASAMLNEMMSLNIMP---NIVTFSLLINIFCKEGNVFEARGVLKTM 141

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P++  Y+S+++GYS   +  EA    + M      P   +Y+ LI  Y K K  
Sbjct: 142 TEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRI 201

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E       M   G +PD ++YN LI      G L+     +K+MLT        T   +
Sbjct: 202 GEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSIL 261

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           LD +   G L K  + ++ +    T LK ++V
Sbjct: 262 LDGFCKQGYLAKAFRLFRAM--QSTYLKPNMV 291



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 114/284 (40%), Gaps = 1/284 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G    A   F++M     +P +  Y++II    K  + NEAL   + MK   
Sbjct: 16  IINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG 75

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +SP   TY+ LIQ    +  + E    L  M      P+ +T++LLI  F   G +    
Sbjct: 76  ISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEAR 135

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G  K+M    +     T  ++++ Y     + +  K +  ++             L   Y
Sbjct: 136 GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGY 195

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
            K         L +++  +    ++V    L+   C L   R    + + M +     ++
Sbjct: 196 CKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDL 255

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            T +I+L  + K         L   + + ++KP++V   IL DA
Sbjct: 256 CTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 299



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 104/264 (39%), Gaps = 48/264 (18%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P +  Y +II+G  KIG+   A     +M E    P   TY  +I +  K +  +E   
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALD 66

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
               MK  G SP+  TYN LIQ                  L      R ++  A+L+  M
Sbjct: 67  IFSYMKAKGISPNIFTYNSLIQG-----------------LCNFSRWREAS--AMLNEMM 107

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
           +  ++  +  F          L  ++  K   V+    +   + ++G +           
Sbjct: 108 SLNIMPNIVTF---------SLLINIFCKEGNVFEARGVLKTMTEMGVE----------- 147

Query: 351 WCLRLLSHACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLKMKDFKHLR 403
               +++++ L++   + + V E       M +   + +V + NI++  Y K K     +
Sbjct: 148 --PNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAK 205

Query: 404 VLLSELPTRHVKPDIVTIGILYDA 427
            L +E+  + + PDIV+   L D 
Sbjct: 206 QLFNEMIHQGLTPDIVSYNTLIDG 229



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLN 198
           F+   +I   C+   + EA + F EM    L P +  YN++I G  ++G+  EA  LF N
Sbjct: 186 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 245

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            +   NL P   TY  L+  + K     +     + M+     P+ + YN+LI
Sbjct: 246 MLTNGNL-PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 297


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 43/323 (13%)

Query: 126 FDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
            ++ + +EK   R N      ++  LC+EGL+ EA     EM G  +   +  YNS+IHG
Sbjct: 181 IELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHG 240

Query: 184 YSKIGKFNEALLFLNE--MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           +   G+F  A+  LNE  MKE ++ P   T++ L+ A  K  M  E      +M   G  
Sbjct: 241 FCGAGQFQGAVRLLNEMVMKE-DVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLE 299

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           PD ++ N L+  +   G +   +  +  M+ +       +   +++ Y    M+D     
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVD----- 354

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLLSHA 359
                        + +R L E++ +N +   +  + L D L S+ GR    W        
Sbjct: 355 -------------EALRLLTEMHQRNLVPDTVTYNCLLDGL-SKSGRVLYEW-------- 392

Query: 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
                     +V  M ++    ++ T N++L  YLK +       L   +    + P+I 
Sbjct: 393 ---------DLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIR 443

Query: 420 TIGILYDARRIGFDGTGALEMWK 442
           T  IL D    G     A E+++
Sbjct: 444 TYNILIDGLCKGGRMKAAKEIFQ 466



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 156/389 (40%), Gaps = 48/389 (12%)

Query: 50  LSSAPSLD-YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCP--LQILQH-DGDWT-KD 104
           L   P+ D   ST H  L +       +LN L+  + K    P  + +  H D   T K 
Sbjct: 30  LPKTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKP 89

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAF 162
               +  F+ + +   Q+   F +   I K    ++ F    ++  LC +G   EA+  +
Sbjct: 90  SLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLY 149

Query: 163 QEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
                +GF+       Y ++I+G  K+GK  +A+  L +M++  + P    Y+ ++    
Sbjct: 150 DHAVSKGFSFDEV--CYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLC 207

Query: 221 KYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLR 278
           K  +  E   +C +M+   G   D  TYN LI  F  AG  +        M+ K  +   
Sbjct: 208 KEGLVTEACGLCSEMVG-KGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPD 266

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
             T   ++DA    GM+ +    +  ++  +  L+ D+V         N + +       
Sbjct: 267 VYTFNILVDALCKLGMVAEARNVFGLMI--KRGLEPDVVS-------CNALMNG------ 311

Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
                       WCLR     C+   + +    R +E  K+  NV + + ++  Y K+K 
Sbjct: 312 ------------WCLR----GCMSEAKEVFD--RMVERGKLP-NVISYSTLINGYCKVKM 352

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                 LL+E+  R++ PD VT   L D 
Sbjct: 353 VDEALRLLTEMHQRNLVPDTVTYNCLLDG 381



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 124 QVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +VFD  + +E+ ++ N  +   +I   C+  +++EA+R   EM    L P    YN ++ 
Sbjct: 323 EVFD--RMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLD 380

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G SK G+       +  M+    +P   TY+ L+  Y K +  D+     + +   G SP
Sbjct: 381 GLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISP 440

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRS 279
           +  TYN+LI      G +K  +  ++ +  K  R ++R+
Sbjct: 441 NIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRT 479


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +QI  + D+++ ++K   +   F    +I      G ++EA+  F+E+E    KP +  Y
Sbjct: 456 KQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISY 515

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS+I+   K G  +EA +   EM+E  L+P   TY  L++ +GK +  +      + M +
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV 575

Query: 238 DGCSPDHITYNLLIQEFACAG 258
            GC P+ +TYN+L+     +G
Sbjct: 576 KGCQPNIVTYNILLDCLEKSG 596



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR   + FD++  I +   +++ F    ++  L ++   E+A + F++M+    +    
Sbjct: 215 RSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEY 271

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    +IGK++EA+   NEM    L+     Y+ L+Q   K KM D+       M
Sbjct: 272 SYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
              GC P+  TY+L++      G L R++G
Sbjct: 332 VETGCRPNEYTYSLVLNLLVAEGQLVRLDG 361



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F++M+     P +  YN +I  + ++G+ +EA+    E++  +  P   +Y+ LI   GK
Sbjct: 465 FEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGK 524

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLR 278
               DE  +  K M+  G +PD +TY+ L++   C G  +R+E  Y   + ML K     
Sbjct: 525 NGDVDEAHVRFKEMQEKGLNPDVVTYSTLME---CFGKTERVEMAYSLFEEMLVKGCQPN 581

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRL 305
             T   +LD     G   +    Y ++
Sbjct: 582 IVTYNILLDCLEKSGRTAEAVDLYTKM 608



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L + G + EA R F +M  F +K   + Y S++      GK  EA+  L+++ E  
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           +   +  Y+ +  A GK K    I    + MK DG SPD  TYN+LI  F   G
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVG 491



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 5/176 (2%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DMW    K   + + S  ++  LC  G   EA+    ++    +     +YN++     K
Sbjct: 397 DMWSFPVKGERDSYMS--MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGK 454

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
           + + +       +MK+   SP   TY+ LI ++G+    DE     + ++   C PD I+
Sbjct: 455 LKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIIS 514

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           YN LI      G +      +K M  K ++    T   +++    FG  +++E  Y
Sbjct: 515 YNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMEC---FGKTERVEMAY 567


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+N+     +I  L +EG  EEA+  +++M     +P++ +Y+++I G  + GK NEA  
Sbjct: 359 RLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKE 418

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            LN M      P   TY  L++ + K  + +E     + M   GCS +   Y++LI    
Sbjct: 419 ILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLC 478

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             G +K     +  MLT  +   +    +++      G +D   K Y  +L    P
Sbjct: 479 GVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEP 534



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++ A+  F+ M      P    Y +++ G  K  + +EA+L L+EM+   
Sbjct: 193 VIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP    Y+ LI    K      +   +  M L GC P+ +TYN LI      G L +  
Sbjct: 253 CSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAV 312

Query: 265 GTYKSMLTKR 274
              + M++ +
Sbjct: 313 SLLERMVSSK 322



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG----FALKPSLEIYNSIIHGYSKIGK 189
           K  +  FNS  ++ ++  EGL    +  +  +        + P+   +N +I    K+G 
Sbjct: 145 KRSVKSFNS--VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGF 202

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            + A+     M E    P   TY  L+    K +  DE  + L  M+ +GCSP  + YN+
Sbjct: 203 VDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           LI      G L R+     +M  K       T   ++      G LDK     +R+++S+
Sbjct: 263 LIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +   +W+ ++++    NEF    +I  LC  G ++EA+  + +M    +KP    Y+S+I
Sbjct: 450 EAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMI 509

Query: 182 HGYSKIGKFNEALLFLNEM---KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            G   IG  + AL   +EM   +E    P   TY+ L+      K        L  M   
Sbjct: 510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDR 569

Query: 239 GCSPDHITYNLLIQEFA 255
           GC PD IT N  +   +
Sbjct: 570 GCDPDVITCNTFLNTLS 586



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+E  ++EAV    EM+     PS  IYN +I G  K G  +     ++ M      P 
Sbjct: 232 LCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPN 291

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             TY+ LI         D+    L+ M    C P+ +TY  LI      GL+K+
Sbjct: 292 EVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN-----GLVKQ 340



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 101/284 (35%), Gaps = 33/284 (11%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     +I  L ++    +  R    ME    + +  IY+ +I G  K GK  EA+   
Sbjct: 326 NDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLW 385

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M E    P    Y  +I    +    +E    L  M   GC P+  TY+ L++ F   
Sbjct: 386 KKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKT 445

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           GL +     ++ M              ++D     G + +    + ++L     +K D V
Sbjct: 446 GLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLT--IGIKPDTV 503

Query: 318 RKLAEVYIKNYMFSRLDDLGD-DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
                    + M   L  +G  D A +            L H  L             E 
Sbjct: 504 A-------YSSMIKGLCGIGSMDAALK------------LYHEMLCQ-----------EE 533

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            K + +V T NI+L      KD      LL+ +  R   PD++T
Sbjct: 534 PKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVIT 577


>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
          Length = 278

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+   + PSL+ YN++I  Y K  +   A+   N +++  LS    TY  +I  YGK   
Sbjct: 1   MKAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGF 60

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           + +       M+ +G  P  +TYN ++  +A +GL  R E  +  M  +     S T ++
Sbjct: 61  FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLS 120

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           ++ AY N     + E   KR+   R  L   LV
Sbjct: 121 LICAYTNCQRFQEAEDLLKRM--HRQGLAPGLV 151



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            ++R++     ++ +++KS   ++E     +I    + G  ++A + F  M+   +KP  
Sbjct: 21  GKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGK 80

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+++  Y++ G    A    N+M++   SP S TY  LI AY   + + E +  LK 
Sbjct: 81  VTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKR 140

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLK 261
           M   G +P  + +N L+  F  AGL++
Sbjct: 141 MHRQGLAPGLVHFNHLVFAFGKAGLVE 167


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I  LC  G + +A +    M     +PS+  +N ++ GY K GK + AL F 
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           N+MK     P + TY+ LI  + + +     +  L  MK  G  P  +TY +LI  FA
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 11/190 (5%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q  + F +++ + +  +  N +    +IG  C  G  E A   F EM    +  ++  YN
Sbjct: 88  QREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYN 147

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKL 237
           ++I G  + GK  +A   L+ M+     P   T++ L+  YGK  KM + +      MK 
Sbjct: 148 TLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPF-FNQMKA 206

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN------ 291
            G  P  +TYN+LI  F  A  + R       M  + +     T   ++D++        
Sbjct: 207 AGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGK 266

Query: 292 -FGMLDKMEK 300
            F +L  MEK
Sbjct: 267 AFEILAGMEK 276



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 25/304 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+ G + EA R F EM    L P+   Y +++HGY   G+  +      EM+   
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---- 260
           + P   TY+ LI  + +   ++        M + G   + ++YN LI      G L    
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 261 -----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
                 R EGT  S++T  +         ++D Y   G +     F+ ++  +       
Sbjct: 164 KLLDMMRTEGTRPSIITFNL---------LVDGYGKAGKMSNALPFFNQMKAAGFQPSAV 214

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGID-SVVRE 373
               L   + +    +R +    D+  R +  T++ + + + S A   +H G    ++  
Sbjct: 215 TYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA-RENHMGKAFEILAG 273

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ME A +  +  T  +++ A     + K  R L   +  + V+P      ++YD    G+ 
Sbjct: 274 MEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS----NVIYDMMIYGYG 329

Query: 434 GTGA 437
             G+
Sbjct: 330 REGS 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R   + + F++   +EK+   ++      ++  LC EG M++A + FQ M    ++PS 
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            IY+ +I+GY + G   +AL  + EM++  L P S +Y
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASY 356



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++++G  K G   EA    +EM  + L+P   TY  L+  Y  +   ++     + M+ 
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR 101

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            G  P+  TYN LI E+   G  +R    +  M
Sbjct: 102 GGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134


>gi|195612318|gb|ACG27989.1| hypothetical protein [Zea mays]
          Length = 603

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 1/211 (0%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+RA+ ++     +P    Y S+I+ Y ++G+ + A    +EM E         Y  
Sbjct: 378 LKPAIRAYDKLVLIGCEPGQVTYASVINVYCRLGRSDRAEAIFSEMIERGFDRCVVAYGN 437

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I  YGK +   E    L +MK  GC P+ + YN L+      G  K+ E  +K ML ++
Sbjct: 438 MISMYGKIRRASEATRLLALMKQKGCEPNVLVYNSLLDMHGRLGNSKQAEKIWKEMLRRK 497

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     +  AI+ A    G LD+  + Y+    +   + + +   +  V  K   F+ L 
Sbjct: 498 VRPDRISYTAIILANNRAGELDRCMELYQEFRETGRKVDKVMAGLMVGVLSKTSRFNELI 557

Query: 335 DLGDDL-ASRIGRTELVWCLRLLSHACLLSH 364
           +L  ++  +++ R   +  LR L  A L  H
Sbjct: 558 ELLKEMNGTKLDRRLYMSVLRSLRDAGLEVH 588



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I + C  G  + A   F EM        +  Y ++I  Y KI + +EA   L  MK+  
Sbjct: 403 VINVYCRLGRSDRAEAIFSEMIERGFDRCVVAYGNMISMYGKIRRASEATRLLALMKQKG 462

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ L+  +G+     + +   K M      PD I+Y  +I     AG L R  
Sbjct: 463 CEPNVLVYNSLLDMHGRLGNSKQAEKIWKEMLRRKVRPDRISYTAIILANNRAGELDRCM 522

Query: 265 GTYK 268
             Y+
Sbjct: 523 ELYQ 526


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+   + Q   ++  + KSR++    N  +I+ +L ++ LM +AV  ++ M  F +KP++
Sbjct: 175 SKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTI 234

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN+++  Y K GK  + L  L+EM+    +P   TY+ LI    K   +++    +  
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG- 293
           M   G      TYN LI  +   G+L       + M+ K      +T  + +      G 
Sbjct: 295 MLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 294 MLDKMEKFYKRLLNSRTP 311
           M D M++    L N+  P
Sbjct: 355 MSDAMQQLSDMLANNLLP 372



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           E G + +    F EM    L PS+  Y  +IHG++  G+   A ++ +EM+E  + P   
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ LI    K +  D+       M   G  P+  +Y +LI E    G  +     YK M
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQM 680

Query: 271 LTKRMHLRSSTMVAIL 286
           L + +   S T  A+L
Sbjct: 681 LDRGVQPDSCTHSALL 696



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 118/291 (40%), Gaps = 38/291 (13%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G M +A++   +M    L P +  YN++I+GY ++G   +A L  +E++ + L P 
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 408

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ L+    +    +        M  +G +PD +TY +L+      G L   +  + 
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            ML + + L S      +   +  G   +     + +L    P   DL+       I N 
Sbjct: 469 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFP--PDLI-------IYNV 519

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
           +   L  LG+                 L  A          ++++M S  V  +  T   
Sbjct: 520 VVDGLCKLGN-----------------LEEA--------SELLQKMVSDGVIPDYVTYTS 554

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           I+ A+L+    +  R +  E+ ++ + P +VT  +L      G  G G LE
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH----GHAGKGRLE 601



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G +EEA    Q+M    + P    Y SIIH + + G+  +      EM    
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L+P   TY  LI  +      +   +    M+  G  P+ ITYN LI    C   ++RM+
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL-CK--VRRMD 636

Query: 265 GTYK---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             Y     M+ K +     +   +++   N G   +    YK++L+
Sbjct: 637 QAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLD 682



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G +E A   F EM+   + P++  YNS+I+G  K+ + ++A  F  EM E  + P   +
Sbjct: 597 KGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYS 656

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           Y  LI        + E     K M   G  PD  T++ L+++  
Sbjct: 657 YTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLG 700



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 60/303 (19%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD---------------------- 210
           S++I + +I  YSK     + L   ++M +  LSP                         
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 211 -------------TYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
                        TY+ L+ +Y K  K+   +D+ L  M+  GC+P+ +TYN+LI   + 
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDL-LSEMQRRGCAPNDVTYNVLINGLSK 281

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G  ++ +G    ML   + + + T   ++  Y N GML +              L+E++
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA-----------LSLQEEM 330

Query: 317 VRKLAEVYIKNY------------MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364
           V K A   +  Y            M   +  L D LA+ +    + +   +  +  L + 
Sbjct: 331 VLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNL 390

Query: 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                +  E+ S  +   + T N +L    +  + +  + L  E+    + PDIVT  IL
Sbjct: 391 MKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 425 YDA 427
            + 
Sbjct: 451 VNG 453



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F EM    L+     Y + I G  K+G  + A     EM      P  
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             Y+ ++    K    +E    L+ M  DG  PD++TY  +I      G L++    +  
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           ML+K +     T   ++  +   G L++   ++  +
Sbjct: 575 MLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 38/229 (16%)

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           S  + Q+ DM  N     +  +N+  +I   C  G + +A   F E+    L P++  YN
Sbjct: 356 SDAMQQLSDMLANNLLPDVVSYNT--LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA---YGKYKMYDEI--DMCLK 233
           +++ G  + G+   A     EM    ++P   TY  L+      G   M  E   +M  +
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473

Query: 234 MMKLD------------------------------GCSPDHITYNLLIQEFACAGLLKRM 263
            ++LD                              G  PD I YN+++      G L+  
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEA 533

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSRTP 311
               + M++  +     T  +I+ A++  G L K  E FY+ L    TP
Sbjct: 534 SELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTP 582


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 44/320 (13%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR++ + F++++ + +    ++ F    ++  L + G++++A + F++M+    +P   
Sbjct: 198 RSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAY 257

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    + GK ++ L F +EM     +     Y+ LI+A GK KM D++   L  M
Sbjct: 258 TYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKM 317

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              GC P+  TY++ +   A  G L R+                + ++ I D YMN    
Sbjct: 318 IEGGCQPNQFTYSITLDILAKEGQLHRL----------------NEVLDICDRYMN---- 357

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
              +  Y  L+ S +  K   V +   V+ + +      D          R   V  L +
Sbjct: 358 ---KSIYSYLVKSLS--KSGHVSEAHNVFCQMWNSYETGD----------RDAFVSMLEV 402

Query: 356 LSHACLLSHRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           L +    S + ++++  +  M    V  +V   N++  A  K+K    +  L  ++    
Sbjct: 403 LCN----SGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANG 458

Query: 414 VKPDIVTIGILYDA-RRIGF 432
           + PD+ T  I+  +  R+G 
Sbjct: 459 IAPDLFTYNIMISSYGRVGL 478



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+++A   F++M   + KP +  YNS+I+   K G  +EA +   EM+E    P   TY
Sbjct: 477 GLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTY 536

Query: 213 DGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             LI+ +GK    +++DM   +   M  +GC P+ +TYN+L+      G        Y++
Sbjct: 537 SILIECFGKS---NKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYET 593

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           M  K+  L   ++           +L+++E   +R +  R P +
Sbjct: 594 M--KQQGLTPDSITC--------SILERLESRSQRTVRIRKPAR 627



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F +M+   + P L  YN +I  Y ++G  ++A     +M   +  P   TY+ LI   GK
Sbjct: 451 FDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGK 510

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               DE  M  K M+  G  PD  TY++LI+ F 
Sbjct: 511 NGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFG 544


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC EG + EA     +M G  L   +  Y +I++G  K+G    AL  L++
Sbjct: 229 FNT--LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E ++ P    Y  +I    K   + +       M   G +P+  TYN +I  F   G 
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +   + M+ + ++    T  A++ A +  G L + EK    +L+            
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMES 376
           +   + K+  F     + D +AS     ++V    ++   C    + +D    ++RE+  
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYC--RAKRVDEGMQLLREISR 460

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N TT N ++  + ++ +    + L  E+ +  V PD +T  IL            
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
           ALE+++ I      ++++T    + ++G  KG  +    +++ SL  +  E    TY  +
Sbjct: 521 ALELFEVIQ--MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578

Query: 495 I 495
           I
Sbjct: 579 I 579



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G   +A R  ++M    + P +  +N++I    K GK  EA    
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P + TY+ +I  + K+  +D+      +M     SPD +T+N +I  +  A
Sbjct: 390 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRA 445

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              KR++        + M L                    + +  +R L + T     L+
Sbjct: 446 ---KRVD--------EGMQL--------------------LREISRRGLVANTTTYNTLI 474

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES- 376
               EV   N       DL  ++ S     + + C  LL   C   +  ++  +   E  
Sbjct: 475 HGFCEVDNLN----AAQDLFQEMISHGVCPDTITCNILLYGFC--ENEKLEEALELFEVI 528

Query: 377 --AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
             +K+  +    NII+    K         L   LP   V+PD+ T    Y+    GF G
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT----YNVMISGFCG 584

Query: 435 TGAL 438
             A+
Sbjct: 585 KSAI 588



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            CE   +EEA+  F+ ++   +      YN IIHG  K  K +EA      +    + P 
Sbjct: 512 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             TY+ +I  +       + ++    MK +G  PD+ TYN LI+    AG + +
Sbjct: 572 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 116/310 (37%), Gaps = 61/310 (19%)

Query: 123 PQV-FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           P V   +++ +E  RI  N ++   +I   C+   +  ++  F ++     +P +  +N+
Sbjct: 122 PDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNT 181

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++HG     + +EAL     M E           G ++A   +    EI          G
Sbjct: 182 LLHGLCLEDRISEALALFGYMVET----------GFLEAVALFDQMVEI----------G 221

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            +P  IT+N LI      G +         M+ K +H+   T   I++     G      
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMG------ 275

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKN--YMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
                  ++++ L  +L+ K+ E +IK    ++S + D                  RL  
Sbjct: 276 -------DTKSAL--NLLSKMEETHIKPDVVIYSAIID------------------RLCK 308

Query: 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
                 H     +  EM    +  NV T N ++  +     +   + LL ++  R + PD
Sbjct: 309 DG---HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365

Query: 418 IVTIGILYDA 427
           ++T   L  A
Sbjct: 366 VLTFNALISA 375



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 2/182 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R++++ +   + + I +  +  N      +I   CE   +  A   FQEM    + P   
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 503

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N +++G+ +  K  EAL     ++   +   +  Y+ +I    K    DE       +
Sbjct: 504 TCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSL 563

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            + G  PD  TYN++I  F     +      +  M        +ST   ++   +  G +
Sbjct: 564 PIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEI 623

Query: 296 DK 297
           DK
Sbjct: 624 DK 625


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G + EA++ F E+E + +K  +E +  +I G  K GK   A     ++ E  + P 
Sbjct: 422 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 481

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +  Y  +I  + K    D+ ++  + M+ +GCSPD ITY++L++ F
Sbjct: 482 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGF 527



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEG------FALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           +I  LC  G +  A++  QEM        F  +P++  Y+ II G  K+G + EA+   N
Sbjct: 202 LIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFN 261

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EM +  + P   T+  LI    K     +    L+MM   G  P+  TY  LI+ F   G
Sbjct: 262 EMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVG 321

Query: 259 LLKRMEGTYKSMLTK 273
            L   +  + SM +K
Sbjct: 322 DLNSAKELFVSMPSK 336



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VF+        R N  +   II  LC+ G  EEA+  F EM    ++P++  ++ +I 
Sbjct: 228 PYVFN-------CRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLID 280

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K G+  +A   L  M ++ + P   TY  LI+ +      +        M   G  P
Sbjct: 281 MLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEP 340

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D I+YN+LI  +     ++     +  ML   M     T   +L A    G +D  ++ +
Sbjct: 341 DVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELF 400

Query: 303 KRLLNSRTP 311
           + +     P
Sbjct: 401 RVIKPYAMP 409



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +E A   F+++    ++P    Y+S+IHG+ K G+ ++A +   +M+E  
Sbjct: 453 LIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENG 512

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            SP   TY  L++ + +    +++   L  M      PD   Y  ++++  C
Sbjct: 513 CSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYA-IVEDMVC 563



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 35/203 (17%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G +  A   F  M     +P +  YN +I+GY K  K  EA+   
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365

Query: 198 NEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEI-----------DMCLKMMKLDG-CSP 242
           NEM  + + P   T   L++A    GK     E+           D+C+  + LDG C  
Sbjct: 366 NEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKN 425

Query: 243 DHI-----------TYN--LLIQEFAC-------AGLLKRMEGTYKSMLTKRMHLRSSTM 282
            +I           +YN  L I+ F C       AG L+     ++ +  + +   +   
Sbjct: 426 GYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAY 485

Query: 283 VAILDAYMNFGMLDKMEKFYKRL 305
            +++  +   G +DK    ++++
Sbjct: 486 SSMIHGFCKKGQVDKANILFQKM 508



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 65/351 (18%), Positives = 138/351 (39%), Gaps = 17/351 (4%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG- 220
           +++M    L P L   N +I+    + + NE L  +  +      P   T+  LI+    
Sbjct: 114 YKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCV 173

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR----MH 276
           ++++ +   + ++M KL GC+P+ +TY  LI+     G +      ++ ML        +
Sbjct: 174 EHRIIEATKLFMRMQKL-GCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFN 232

Query: 277 LRSSTM--VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
            R + +    I+D     G  ++    +  +++            L ++  K     +  
Sbjct: 233 CRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAK 292

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAY 393
            L + +        L     L+   CL+        +   M S     +V + N+++  Y
Sbjct: 293 KLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGY 352

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI 453
            K    +    L +E+    + PD+ T G+L  A  +      A E+++ I    K   +
Sbjct: 353 CKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVI----KPYAM 408

Query: 454 NTDPLVLAVYGKG----HFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
             D  +  ++  G     ++    ++++ LE Y+ +    T+  LID + K
Sbjct: 409 PKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCK 459


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 61/97 (62%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   F+E +   +  ++ IY+S+I G+ K+G+ +EA L L E+ +  L+P S T++ 
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L+ A  K +  DE  +C + MK   CSP+ +TY+++I
Sbjct: 733 LLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMI 769



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 64/126 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +++A +  +EM+   L+P++  Y S++ G +KI + +EA +   E K + 
Sbjct: 628 VIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIG 687

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +      Y  LI  +GK    DE  + L+ +   G +P+  T+N L+     A  +   +
Sbjct: 688 VDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQ 747

Query: 265 GTYKSM 270
             +++M
Sbjct: 748 VCFQNM 753



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   FQ M+     P+   Y+ +I+G   I KFN+A +F  EM++  L P + TY  
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I    K     E        K  G  PD   YN +I+  + A         ++    K 
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG 862

Query: 275 MHLRSSTMVAILDA 288
             + S T V +LDA
Sbjct: 863 CRVNSKTCVVLLDA 876



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 8/287 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  L  +G +EEA+R   EM   A  P+L  YN +I    K G+   AL   + MKE  
Sbjct: 384 ILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKR 262
           L P   T + +I    K +  DE   C   + LD   CSPD  T+  LI      G +  
Sbjct: 443 LFPNIMTVNIMIDRLCKAQKLDE--ACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDD 500

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
               Y+ ML            +++  +   G  +   K YK +++        L+    +
Sbjct: 501 AYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMD 560

Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVR 380
              K     +   L +++ ++ G    V    +L H  + +   R    +  EM+   + 
Sbjct: 561 CVFKAGEVEKGRALFEEIKAQ-GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLH 619

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +V   N ++  + K         LL E+ T+ ++P +VT G + D 
Sbjct: 620 LDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDG 666



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+   ++EAV  F+E++     P +  YN++I GY   GKF+EA   L   K   
Sbjct: 314 LIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKG 373

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
             P    Y+ ++   G+    +E       M+ D  +P+  TYN+LI     AG L+
Sbjct: 374 CIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELE 429



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G   E  + F EM+   L   +  YN++I G+ K GK ++A   L EMK   
Sbjct: 593 LIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG 652

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  ++    K    DE  M  +  K  G   + + Y+ LI  F   G +    
Sbjct: 653 LQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAY 712

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              + ++ K +   S T   +LDA +    +D+ +  ++ + N
Sbjct: 713 LILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +   EG ++ A+    EM+  +    L +YN  I  + K+GK + A  F +EMK   
Sbjct: 244 LVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 303

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           L P   TY  LI    K +  DE     + + L+   P    YN +I  +  AG
Sbjct: 304 LVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAG 357



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E+    F+E++   L P +  Y+ +IHG  K G   E      EMKE  L      Y
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  + K    D+    L+ MK  G  P  +TY  ++   A    L      ++   +
Sbjct: 626 NTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKS 685

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDK 297
             + L      +++D +   G +D+
Sbjct: 686 IGVDLNVVIYSSLIDGFGKVGRIDE 710



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 133/331 (40%), Gaps = 61/331 (18%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEG 167
           +  + +  +S ++ + F + + + K +     S    +IG L      +  +  F +M+ 
Sbjct: 172 VELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQE 231

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              + ++ ++ +++  +++ G+ + AL  L+EMK  + +     Y+  I  +GK     +
Sbjct: 232 IGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKV---GK 288

Query: 228 IDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +DM  K    MK  G  PD +TY  LI      G+L +          +R          
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLI------GVLCK---------ARR---------- 323

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLAS 342
                     LD+  + ++ L         DL R +  VY  N M       G  D+  S
Sbjct: 324 ----------LDEAVELFEEL---------DLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364

Query: 343 RIGRTELVWCL-RLLSHACLLSHRGIDSVVREM------ESAKVRWNVTTANIILLAYLK 395
            + R +   C+  ++++ C+L+  G    V E              N+TT NI++    K
Sbjct: 365 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCK 424

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             + +    +   +    + P+I+T+ I+ D
Sbjct: 425 AGELEAALKVQDTMKEAGLFPNIMTVNIMID 455



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 107/274 (39%), Gaps = 11/274 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+  + ++EM      P L + NS +    K G+  +      E+K   L P   +Y
Sbjct: 531 GRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSY 590

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI    K     E       MK  G   D + YN +I  F  +G + +     + M T
Sbjct: 591 SILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKT 650

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           K +     T  +++D       LD+    ++   +    L   +   L + + K     R
Sbjct: 651 KGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK---VGR 707

Query: 333 LDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV---VREMESAKVRWNVTTA 386
           +D+   + ++L  + G T   +    L  A L+    ID      + M++ K   N  T 
Sbjct: 708 IDEAYLILEELMQK-GLTPNSYTWNCLLDA-LVKAEEIDEAQVCFQNMKNLKCSPNAMTY 765

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +I++     ++ F    V   E+  + +KP+ +T
Sbjct: 766 SIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNIT 799



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 1/137 (0%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F   KN+ K   N      +I  LC      +A   +QEM+   LKP+   Y ++I G +
Sbjct: 750 FQNMKNL-KCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLA 808

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   EA    +  K     P S  Y+ +I+         +  +  +  +L GC  +  
Sbjct: 809 KAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSK 868

Query: 246 TYNLLIQEFACAGLLKR 262
           T  +L+     A  L++
Sbjct: 869 TCVVLLDALHKADCLEQ 885


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 9/357 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+EG ++EAVR   +ME F L P +  YN++I G  +    + A   + EMK   +   
Sbjct: 326 LCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKEN 385

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             T++ +I+ +      DE    +  M   G SPD  TYN +I  +  AG +        
Sbjct: 386 GVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMD 445

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M  K + L + T+  +L        LD       +       L E     L   Y K+ 
Sbjct: 446 EMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDE 505

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL--SHRGIDSVVREMESAKVRWNVTTA 386
              R   L +++        ++    ++   CL   + + +D +   +E   V  + +T+
Sbjct: 506 QADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVP-DESTS 564

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR-RIGF--DGTGALEMWKR 443
           NII+  Y      +      +++    +KPDI T  IL     R G    G      W  
Sbjct: 565 NIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWIS 624

Query: 444 IGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
            G    TV  N   ++++ + K   L    ++ + +E  + E  R+TY  ++  + K
Sbjct: 625 KGKPMDTVTYN---IIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTK 678



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            FQ+     ++P++  +N +IHGY       EAL  +N+M E    P + TY+ ++ A  
Sbjct: 198 VFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALC 257

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     ++   L  MK  G  P+  TYN+L+  +     LK      + M  K M     
Sbjct: 258 KRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVW 317

Query: 281 TMVAILDAYMNFGML-------DKMEKF 301
           T   ++    + G +       DKME F
Sbjct: 318 TYNTMVRGLCDEGKIDEAVRLRDKMESF 345



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           SR++ Q  D  K   +  +N FN   +I   C +   EEA+R   +M  +   P    YN
Sbjct: 195 SREVFQ--DAVKLGVQPNVNTFNI--LIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYN 250

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++    K  +  +    L +MK   L P  +TY+ L+  Y K K   E    +++M   
Sbjct: 251 TVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGK 310

Query: 239 GCSPDHITYNLLIQEFACAG 258
           G  PD  TYN +++     G
Sbjct: 311 GMLPDVWTYNTMVRGLCDEG 330



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 124/339 (36%), Gaps = 73/339 (21%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE-- 202
           +I   C EG ++EA     +M      P    YN++I+GY K GK  EA   ++EM    
Sbjct: 392 MIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKG 451

Query: 203 --------------MNLSPQSD-------------------TYDGLIQAYGKYKMYDEID 229
                         M L  Q D                   TY  LI  Y K +  D   
Sbjct: 452 LKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRAL 511

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              + MK  G     ITYN +I+    +G   +       +L K +    ST   I+  Y
Sbjct: 512 KLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGY 571

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
              G ++K  +F+ +++     LK D       ++  N +   L         R G  E 
Sbjct: 572 CWEGAVEKAFQFHNKMVEHS--LKPD-------IFTCNILLRGL--------CREGMLE- 613

Query: 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
                          +G+ ++     S     +  T NII+ ++ K +  +    L++E+
Sbjct: 614 ---------------KGL-TLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEM 657

Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLF 448
             ++++PD  T    Y+A   G    G  E  +++   F
Sbjct: 658 EGKNLEPDRYT----YNAIVTGLTKAGRTEEAEKLALKF 692



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
            +IR L  S ++ Q   V  + + +EK  + +E  S  II   C EG +E+A +   +M 
Sbjct: 531 TIIRGLCLSGKTDQ--AVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMV 588

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
             +LKP +   N ++ G  + G   + L   N          + TY+ +I ++ K +  +
Sbjct: 589 EHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLE 648

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +    +  M+     PD  TYN ++     AG  +  E
Sbjct: 649 DAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAE 686


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +Q+  + D+++ +++     + F    +I  L   G ++EAV  F+E+E    KP +  Y
Sbjct: 490 KQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISY 549

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM--- 234
           NS+I+   K G  +EA +   EM++  L+P   TY  LI+ +GK    D+++M   +   
Sbjct: 550 NSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT---DKVEMARSLFDR 606

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           M   GC P+ +TYN+L+     AG        Y  +  + +   S T  AILD
Sbjct: 607 MITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITY-AILD 658



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 118 RSRQIPQVF----DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           RSR   + F    +MW N  +  I  +N   ++  L ++  ++ + + F++M+     P 
Sbjct: 246 RSRDSDRAFNVYMEMWSNGYQLDIFAYN--MLLDALAKDEQLDRSYKVFKDMKLKHCNPD 303

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
              Y  +I    K+G+  E+L    EM     +P    Y+ +IQA  K  M D+  +   
Sbjct: 304 EYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFC 363

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            M  + C P+  TY++++      G L R++
Sbjct: 364 NMIKNNCRPNEFTYSIILNVLVAEGQLGRLD 394



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +++M+     P +  YN +I    ++GK  EA+    E++  +  P   +Y+ LI   GK
Sbjct: 499 YEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGK 558

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               DE  M    M+  G +PD +TY+ LI+ F     ++     +  M+T+       T
Sbjct: 559 NGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVT 618

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL 305
              +LD     G   +    Y +L
Sbjct: 619 YNILLDCLERAGRTAETVDLYAKL 642



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN+     ++  L + G   EA R F  M  F      + Y S++    + GK  EA+  
Sbjct: 404 INKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIEL 463

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L+++ E  +S  +  Y+ ++   GK K    +    + MK DG  PD  TYN+LI     
Sbjct: 464 LSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGR 523

Query: 257 AGLLK 261
            G +K
Sbjct: 524 VGKVK 528



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 37/294 (12%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           + A   + EM     +  +  YN ++   +K  + + +     +MK  + +P   TY  +
Sbjct: 251 DRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 310

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML---T 272
           I+  GK    +E     + M   GC+P+ I YN +IQ  + +G++ +    + +M+    
Sbjct: 311 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNC 370

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR---KLAEVYIKNYM 329
           +      S ++ +L A    G LD++ +   + +N    +   LVR   KL      + +
Sbjct: 371 RPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKS--IYAYLVRTLSKLGHSSEAHRL 428

Query: 330 FSRL---DDLGDDLA--------SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           F  +    D GD  A         R G+T  V  + LLS    +  +GI +         
Sbjct: 429 FCNMWSFHDGGDRDAYISMLESLCRGGKT--VEAIELLSK---VHEKGIST--------- 474

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA-RRIG 431
              +    N +L    K+K   HL  L  ++      PDI T  IL  +  R+G
Sbjct: 475 ---DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVG 525



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 93  QILQHDGDWTKDHFWA-VIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLC 150
           ++L+    +     +A ++R L     S +  ++F +MW   +    + + S  ++  LC
Sbjct: 395 EVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYIS--MLESLC 452

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
             G   EA+    ++    +     +YN+++    K+ + +       +MK+    P   
Sbjct: 453 RGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIF 512

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ LI + G+     E     + ++   C PD I+YN LI      G +      +  M
Sbjct: 513 TYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEM 572

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             K ++    T   +++    FG  DK+E
Sbjct: 573 QDKGLNPDVVTYSTLIEC---FGKTDKVE 598


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 1/174 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           + FD  + I   R NE     +I     +GL+ EA R   EM      PS+  YN+ IHG
Sbjct: 375 EFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 433

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +  + +  EAL  + EM E  L+P   +Y  +I  + +    D      + M   G SPD
Sbjct: 434 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            +TY+ LIQ       L       + ML   +     T   +++AY   G L+K
Sbjct: 494 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 547



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +I + F + K++    +  N  +   II  LC EG M+EA    +EM      P    YN
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 323

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++++GY K G F++AL+   EM    +SP   TY  LI +  K +  +        M++ 
Sbjct: 324 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR 383

Query: 239 GCSPDHITYNLLIQEFACAGLL 260
           G  P+  TY  LI  F+  GLL
Sbjct: 384 GLRPNERTYTTLIDGFSRQGLL 405



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 129/302 (42%), Gaps = 13/302 (4%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           ++++ + +SR+  N +    +I   C  G +++ +  F EME     P++  YN++I  Y
Sbjct: 200 EVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY 259

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K+G+ +EA   L  M    + P   +Y+ +I    +     E    L+ M   G +PD 
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 319

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
           +TYN L+  +   G   +    +  M+   +     T  A++++      L++  +F+ +
Sbjct: 320 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 379

Query: 305 L------LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           +       N RT     L+   +   + N  +  L+++ +   S    + + +   +  H
Sbjct: 380 MRIRGLRPNERT--YTTLIDGFSRQGLLNEAYRILNEMTE---SGFSPSVVTYNAFIHGH 434

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             L        VV+EM    +  +V + + I+  + +  +      +  E+  + V PD 
Sbjct: 435 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 494

Query: 419 VT 420
           VT
Sbjct: 495 VT 496



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+   +  A+  F +M    L+P+   Y ++I G+S+ G  NEA   LNEM E  
Sbjct: 360 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 419

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+  I  +   +  +E    ++ M   G +PD ++Y+ +I  F   G L R  
Sbjct: 420 FSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAF 479

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ K +   + T  +++        L +     + +L+   P  E     L   Y
Sbjct: 480 QMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 539



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 19/260 (7%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R  ++ + F M + + +  +  +      +I  LCE   + EA    QEM    L P   
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 530

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y ++I+ Y   G  N+AL   +EM      P + TY  LI    K     E    L  +
Sbjct: 531 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 590

Query: 236 KLDGCSPDHITYNLLIQE---------------FACAGLLKRMEGTYKSMLTKRMHLRSS 280
             +   P  +TY+ LI+                F   GL+   +  ++SM+ +      +
Sbjct: 591 IYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEA 650

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD-LGDD 339
               I+  +   G L K    YK +++S        V  L +   K  M   + + +GD 
Sbjct: 651 VYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDT 710

Query: 340 LAS-RIGRTELVWCLRLLSH 358
           L S R+   EL   L  ++H
Sbjct: 711 LRSCRLNEAELAKVLVEINH 730



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   ++EM    + P++  YN +I G+  +G+  + L    EM+     P   TY+ LI 
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           AY K    DE    LK M   G  P+ I+YN++I      G +K      + M  K    
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 278 RSSTMVAILDAYMNFG 293
              T   +L+ Y   G
Sbjct: 318 DEVTYNTLLNGYCKEG 333


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  + ++G ++ A++   EM   +  P++  Y ++I G SK+G+  +AL  L+ M+E  
Sbjct: 684 LIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKG 743

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
            SP   TY  LI   GK    D      K M   GC+P+++TY +LI     AGLL
Sbjct: 744 CSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLL 799



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 79/180 (43%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N+      LC  G  E+A +  +EM      P    Y  +I    +  K  ++ L 
Sbjct: 415 LNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLL 474

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK   ++P   TY  LI ++ K  + ++       M+  GCSP+ +TY  L+  +  
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           +  L +    +  M+    +  + T  A++D     G + K  + Y++L+ +   ++ D 
Sbjct: 535 SKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF 594



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     +I   C+ G ++ A   F  M      PS+  Y S+I    K G+ + A+  L
Sbjct: 642 NQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 701

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM   + +P   TY  +I    K    ++    L +M+  GCSP+ +TY  LI      
Sbjct: 702 SEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKT 761

Query: 258 G-------LLKRM--EGTYKSMLTKRMHLRSSTMVAILD 287
           G       L K+M  +G   + +T R+ +       +LD
Sbjct: 762 GKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLD 800



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 1/165 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   + +A      M     +P+  +Y+++I G+ KIGK + A      M +  
Sbjct: 614 LIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCG 673

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI    K    D     L  M  D C+P+ +TY  +I   +  G +++  
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
                M  K       T  A++D     G  D   K +K+ +NS+
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQ-MNSK 777



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 20/291 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   +A+    E E F L   L     +I G  +   FNEA+ FL+ M+  +  P 
Sbjct: 249 LCKVGRWADALNML-EKEDFNLDTVL--CTQMISGLMEASLFNEAMSFLHRMRCNSCIPN 305

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLK 261
             TY  L+  + K K +      + MM  +GC+P+   +N L+  +  AG       L  
Sbjct: 306 VVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFN 365

Query: 262 RME--GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           RM   G+    +   + + S   +   +   N  +LD +EK Y+ +L +   L +     
Sbjct: 366 RMTTCGSPPGYVAYNIFIGS---ICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTAN 422

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMES 376
            +        F +   +  ++  +    +     ++++  C    + ++    + +EM+ 
Sbjct: 423 FSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLC--QAKKVEKSFLLFQEMKR 480

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           A V  +V T  I++ ++ K    +  R    E+ +    P++VT   L  A
Sbjct: 481 AGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHA 531



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 18/198 (9%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA------ 169
           +S+Q+ Q  D++  +  +    N      +I  LC+ G +++A   ++++ G +      
Sbjct: 534 KSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESD 593

Query: 170 ----------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
                     + P++  Y ++I G  K  K ++A   L+ M      P    YD LI  +
Sbjct: 594 FYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGF 653

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            K    D        M   G  P   TY  LI      G L         ML    +   
Sbjct: 654 CKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNV 713

Query: 280 STMVAILDAYMNFGMLDK 297
            T  A++D     G ++K
Sbjct: 714 VTYTAMIDGLSKVGEIEK 731


>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Glycine max]
          Length = 819

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 136/320 (42%), Gaps = 33/320 (10%)

Query: 124 QVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V D +K +++S   ++      +   LC  G +E+AV   +EM+   L   ++ Y ++I
Sbjct: 388 EVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLI 447

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           +GY   G    A     EMKE  L P   TY+ L     +     E    L  M+  G  
Sbjct: 448 NGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMK 507

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+  T+ ++I+     G +   E  + S+  K + + S    A+++ Y    ++ K  + 
Sbjct: 508 PNSTTHKMIIEGLCSGGKVLEAEVYFNSLEDKNIEIYS----AMVNGYCETDLVKKSYEV 563

Query: 302 YKRLLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
           + +LLN      K    + L+++ +   +   +  L   L S +  +++++  ++L+  C
Sbjct: 564 FLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYS-KILAALC 622

Query: 361 -------------LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                        +  HRG               +V T  I++ +Y +M   +    L  
Sbjct: 623 QAGDMKNARTLFDVFVHRGFTP------------DVVTYTIMINSYCRMNCLQEAHDLFQ 670

Query: 408 ELPTRHVKPDIVTIGILYDA 427
           ++  R +KPD++T  +L D 
Sbjct: 671 DMKRRGIKPDVITFTVLLDG 690



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 3/212 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F A I  L N+ RS    +V   ++    + +  +    ++   C E  ++EA   F +M
Sbjct: 268 FAAYIEGLCNNHRSDLGYEVLQAFRK-GNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDM 326

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E   + P + +Y+S+IHGY K      AL   +EM    +         ++   G+  M 
Sbjct: 327 ERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMISRGVKTNCVVVSCILHCLGEMGMT 386

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
            E+    K +K  G   D + YN++       G ++      + M +KR+ L       +
Sbjct: 387 LEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTL 446

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           ++ Y   G L      +K +      LK D+V
Sbjct: 447 INGYCLQGDLVTAFNMFKEM--KEKGLKPDIV 476



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 40/290 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    +I  LC++G +++ +  F+EME   + P    + + I G     + +     L
Sbjct: 229 NCYTYAIVIKALCKKGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEVL 288

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
              ++ N   +   Y  +++ +      DE       M+  G  PD   Y+ LI  +  +
Sbjct: 289 QAFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCKS 348

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM-LDKMEKFYKRLLNSRTPLKEDL 316
             L R    +  M+++ +      +  IL      GM L+ +++F +        LKE  
Sbjct: 349 HNLLRALALHDEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKE--------LKESG 400

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREM 374
           +      Y  N +F        D    +G+ E                   D+V  V EM
Sbjct: 401 MFLDGVAY--NIVF--------DALCMLGKVE-------------------DAVEMVEEM 431

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +S ++  +V     ++  Y    D      +  E+  + +KPDIVT  +L
Sbjct: 432 KSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVL 481



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG---------YSKIGKFNEALL 195
           +I   C    ++EA   FQ+M+   +KP +  +  ++ G         +S  GK     L
Sbjct: 652 MINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFSSHGKRKTTSL 711

Query: 196 F----LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +    L +M++M ++P    Y  L+  + K   + +       M   G  PD ITY  L+
Sbjct: 712 YVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTALV 771

Query: 252 QEFACAGLLKRMEGTYKSMLTKRM----HLRSSTMVAILDA 288
                 G +++       M +K M    H+ S+    I+ A
Sbjct: 772 SGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALKRGIIKA 812


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 137/348 (39%), Gaps = 50/348 (14%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +  +    ++  LC++G + +A + F+ +    L P+  IYN++I+GY ++     A   
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +MK  ++ P   TY+ LI    K +M  + +  +  M+  G  P   T+N LI  +  
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
           AG L++       M  K +     +  +++ A+   G + +       ++         +
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQV 511

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
              + + YI++                 G TE          A LL        V +M++
Sbjct: 512 YNSIIDAYIES-----------------GDTE---------QALLL--------VEKMKN 537

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           + V  ++ T N++L    +         L+  L  + ++PD+V+   +  A     D   
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSR 484
           ALE+ +         E+N        YG    LR C  + S+L    R
Sbjct: 598 ALELLQ---------EMNK-------YGIRPTLRTCHTLVSALASAGR 629



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 37/199 (18%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +   KS +  F S  ++   C+ G + EAV    +M    + P+ ++YNSII  Y +
Sbjct: 464 DMQQKGIKSDVISFGS--VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G   +ALL + +MK   +S    TY+ L++   +    DE +  +  ++  G  PD ++
Sbjct: 522 SGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 581

Query: 247 YNL-----------------------------------LIQEFACAGLLKRMEGTYKSML 271
           YN                                    L+   A AG +  ME  Y+ ML
Sbjct: 582 YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQML 641

Query: 272 TKRMHLRSSTMVAILDAYM 290
            K +   SS    ++DAY+
Sbjct: 642 HKNVEPSSSIYGIMVDAYV 660



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 123/295 (41%), Gaps = 9/295 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F+   +I  L   G   +A++ F EM    + P+   YN++I G+ K G         
Sbjct: 193 DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLR 252

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M      P   TY+ L+    +    DE    +  M      PD  TY++L       
Sbjct: 253 DQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRT 312

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLK 313
           G  + M   +   L K + L + T   +L+     G + K ++ ++ L+++     T + 
Sbjct: 313 GESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIY 372

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVR 372
             L+    +V      F     + + + SR  R + +    L++  C L      + +V 
Sbjct: 373 NTLINGYCQVRDLRGAFC----IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVM 428

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           EME + V  +V T N ++ AY      +    +LS++  + +K D+++ G +  A
Sbjct: 429 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 141/380 (37%), Gaps = 53/380 (13%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFN 191
           +R + F   K++      G ++ A+   + M   EG A  P    YN +I G  + GK +
Sbjct: 153 ARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEG-APPPDAFSYNVVIAGLWRSGKGS 211

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +AL   +EM +M ++P   TY+ +I  + K    +        M  DG  P+ +TYN+L+
Sbjct: 212 DALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLL 271

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                 G +         M +  M     T   + D     G    M   +   L     
Sbjct: 272 SGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVM 331

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
           L           Y  + + + L   G     ++ + + V+   +L H  L+         
Sbjct: 332 LG---------AYTCSILLNGLCKDG-----KVAKAKQVF--EMLVHTGLVP-------- 367

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
                          N ++  Y +++D +    +  ++ +RH++PD +T   L       
Sbjct: 368 ----------TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL------- 410

Query: 432 FDGTGALEMWKRIGFLFKTVE-INTDPLV------LAVYGKGHFLRYCEEVYSSLEPYSR 484
            +G   LEM  +   L   +E    DP V      +  YG    L  C  V S ++    
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 485 EKKRWTYQNLIDLVIKHNGK 504
           +    ++ +++    K NGK
Sbjct: 471 KSDVISFGSVVKAFCK-NGK 489



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            LK   RS QI +  ++   +     R +  +   II   C +G  ++A+   QEM  + 
Sbjct: 550 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           ++P+L   ++++   +  G+ ++      +M   N+ P S  Y  ++ AY
Sbjct: 610 IRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 129 WKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +K + + RI  N +    ++   C+ G +E+AV+ F+EME   + P+   YN++I GY +
Sbjct: 204 YKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCR 263

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
            G  N A+   N M+   +     T++ LI  + K     E       MK+   +P+ IT
Sbjct: 264 KGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTIT 323

Query: 247 YNLLIQ 252
           YN LI 
Sbjct: 324 YNTLIN 329



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 115/291 (39%), Gaps = 37/291 (12%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A   F +M+G+   P++E  N+ +     + + + AL F  EM+   +SP   T + +++
Sbjct: 165 ATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMR 224

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
           A+ K    ++     + M+  G SP+  +YN LI  +   GLL        SM  K +  
Sbjct: 225 AFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEA 284

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
              T  +++D +   G L +  K +  +          ++         N + +    +G
Sbjct: 285 NVVTFNSLIDGFCKEGKLHEASKVFSEM---------KVLNVAPNTITYNTLINGHSQMG 335

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
           +   S +GR                       +  EM    V+ ++ T N ++L   K  
Sbjct: 336 N---SEMGR----------------------RLYEEMSRNGVKADILTYNALILGLCKEG 370

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK---RIG 445
             K    ++ EL   ++ P+  T   L   + I  +   A +++K   RIG
Sbjct: 371 KTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIG 421



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 113/279 (40%), Gaps = 21/279 (7%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  ++EM    + P++   N ++  + K GK  +A+    EM+ + +SP   +Y+ LI 
Sbjct: 200 ALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            Y +  + +        M+  G   + +T+N LI  F   G L      +  M    +  
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAP 319

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR---------KLAEVYIKNY 328
            + T   +++ +   G  +   + Y+ +  SR  +K D++          K  +     Y
Sbjct: 320 NTITYNTLINGHSQMGNSEMGRRLYEEM--SRNGVKADILTYNALILGLCKEGKTKKAAY 377

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL--SHRGIDSVVREMESAKVRWNVTTA 386
           M   LD   ++L              L+S  C+   S R    + + M       N  T 
Sbjct: 378 MVKELDK--ENLVPNASTFS-----ALISGQCIRNNSDRAFQ-LYKSMVRIGCHPNEQTF 429

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
           N+++ A+ K +DF+   ++L E+  R   P    +  +Y
Sbjct: 430 NMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIY 468



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 48/178 (26%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           LKNS R++ +           ++ +  FNS  +I   C+EG + EA + F EM+   + P
Sbjct: 273 LKNSMRAKGV-----------EANVVTFNS--LIDGFCKEGKLHEASKVFSEMKVLNVAP 319

Query: 173 SLEIYNSIIHGYSKI-----------------------------------GKFNEALLFL 197
           +   YN++I+G+S++                                   GK  +A   +
Sbjct: 320 NTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMV 379

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            E+ + NL P + T+  LI         D      K M   GC P+  T+N+L+  F 
Sbjct: 380 KELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFC 437


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 127 DMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           D++KN+ K+    + F    ++  LC++G + +A R F+ M+  +LKP L +YN ++   
Sbjct: 85  DLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAM 144

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G   +A    +E+    L P    Y  +I    K  + DE     + M+ DGC PD 
Sbjct: 145 CKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 204

Query: 245 ITYNLLIQEF 254
            +YN++I+ F
Sbjct: 205 FSYNVIIRGF 214



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 2/171 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEM 203
           +I   C+   +++A + + EM    L P    YN++IHG  ++G+  EA  LF N  K  
Sbjct: 35  LINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNG 94

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           NL P    Y  L+    K     +     + M+     PD + YN+L+     +G LK  
Sbjct: 95  NL-PDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDA 153

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              +  +  K +         I++     G+LD+  + ++ +     P  E
Sbjct: 154 RELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 204



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC E  + EA + F  M     KP +  YN +I+GY K  + ++A    NEM    L+P 
Sbjct: 6   LCME--VVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPD 63

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ LI    +     E     K M  +G  PD   Y++L+      G L +    ++
Sbjct: 64  KVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFR 123

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +M +  +         ++DA    G L    + +  L 
Sbjct: 124 AMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELF 161



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 46/79 (58%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  +C+ G +++A   F E+    L+P+++IY +II+G  K G  +EAL     M+E  
Sbjct: 140 LVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 199

Query: 205 LSPQSDTYDGLIQAYGKYK 223
             P   +Y+ +I+ + ++K
Sbjct: 200 CPPDEFSYNVIIRGFLQHK 218



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 9/245 (3%)

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           ++GYS   +  EA    + M      P    Y+ LI  Y K    D+       M L G 
Sbjct: 1   MYGYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGL 60

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI-LDAYMNFGMLDKME 299
           +PD +TYN LI      G L+  +  +K+M  K  +L      +I LD     G L K  
Sbjct: 61  TPDKVTYNTLIHGLCQLGRLREAQDLFKNM-HKNGNLPDLFAYSILLDGLCKQGYLGKAF 119

Query: 300 KFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
           + ++ + +S   LK DLV    L +   K+       +L  +L  +  +  +     +++
Sbjct: 120 RLFRAMQSS--SLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIIN 177

Query: 358 HACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
             C   L    +++  R ME      +  + N+I+  +L+ KD      L+ E+  R   
Sbjct: 178 GLCKEGLLDEALEA-FRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFI 236

Query: 416 PDIVT 420
            D+ T
Sbjct: 237 ADVGT 241



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           II  LC+EGL++EA+ AF+ ME     P    YN II G+ +    + A+  + EM++
Sbjct: 175 IINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRD 232


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I  LC  G + +A +    M     +PS+  +N ++ GY K GK + AL F 
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           N+MK     P + TY+ LI  + + +     +  L  MK  G  P  +TY +LI  FA
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q  + F +++ + +  +  N +    +IG  C  G  E A   F EM    +  ++  YN
Sbjct: 88  QREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYN 147

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G  + GK  +A   L+ M+     P   T++ L+  YGK             MK  
Sbjct: 148 TLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAA 207

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN------- 291
           G  P  +TYN+LI  F  A  + R       M  + +     T   ++D++         
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKA 267

Query: 292 FGMLDKMEK 300
           F +L  MEK
Sbjct: 268 FEILAGMEK 276



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 25/304 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+ G + EA R F EM    L P+   Y +++HGY   G+  +      EM+   
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---- 260
           + P   TY+ LI  + +   ++        M + G   + ++YN LI      G L    
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 261 -----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
                 R EGT  S++T  +         ++D Y   G +     F+ ++  +       
Sbjct: 164 KLLDMMRTEGTRPSIITFNL---------LVDGYGKAGKMSNALPFFNQMKAAGFQPSAV 214

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGID-SVVRE 373
               L   + +    +R +    D+  R +  T++ + + + S A   +H G    ++  
Sbjct: 215 TYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA-RENHMGKAFEILAG 273

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ME A +  +  T  +++ A     + K  R L   +  + V+P      ++YD    G+ 
Sbjct: 274 MEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS----NVIYDMMIYGYG 329

Query: 434 GTGA 437
             G+
Sbjct: 330 REGS 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R   + + F++   +EK+   ++      ++  LC EG M++A + FQ M    ++PS 
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            IY+ +I+GY + G   +AL  + EM++  L P S +Y
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASY 356



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
            ++++G  K G   EA    +EM  + L+P   TY  L+  Y  +   ++     + M+ 
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR 101

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            G  P+  TYN LI E+   G  +R    +  M
Sbjct: 102 GGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 34/376 (9%)

Query: 58  YHSTKHTT--LLVESY-HEHQALNALIQRL--------NKKVSCP--LQILQHDGDWTKD 104
           + ST H    LL+++Y  E + L+A +              V+C   L+ L  +G+    
Sbjct: 80  FDSTNHVVFELLIKAYVKERKVLDAAVAVFFMDDCGFKASPVACNSILKALVEEGE--SK 137

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + W  +R     S +R+ P             ++      ++  LC  G   +A    Q+
Sbjct: 138 YVWLFLR----ESLARKFP-------------LDVTTCNILLNSLCTNGEFRKAEDMLQK 180

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+   L  S   YN+I+H Y K G+F  AL  L +M+  ++     TY+ +I    + K 
Sbjct: 181 MKSCCLSNS-ATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKR 239

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
                + LK M+ D  +PD  TYN LI  F   G +      +  ML + +    +T   
Sbjct: 240 SARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTT 299

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
           ++D Y     +DK       +  +     E     L   Y K  M     DL  DL SR 
Sbjct: 300 MIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRG 359

Query: 345 GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
                  C  L+   C +        +++ M    +  +V T + ++    +M      +
Sbjct: 360 ITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETK 419

Query: 404 VLLSELPTRHVKPDIV 419
            +LS +    + P+ V
Sbjct: 420 EILSRMQKSGILPNDV 435



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 135 SRIN-EFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           SR+N  FNS     II   C  G + EA   + +M  +   P++  Y +++ G  + G  
Sbjct: 496 SRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHL 555

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNL 249
            +A  F+  + ++  +    T++ L+    KY   DE +D+C KM+K + C PD  TY +
Sbjct: 556 VQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVK-NNCLPDIHTYTI 614

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           L+  F   G +       + ML K +   +     +L+  +N G +      ++ ++
Sbjct: 615 LLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEII 671



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 19/127 (14%)

Query: 148 MLCEEGLMEEAVRAFQEMEGF-------------------ALKPSLEIYNSIIHGYSKIG 188
           ++C+EGL  + +     M G+                    + P+   YN ++HGY K G
Sbjct: 670 IICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRG 729

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           +F+++L     M    + P + TY  LI    +  + D     L+ M L+G  PD + ++
Sbjct: 730 QFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFD 789

Query: 249 LLIQEFA 255
           +LI  F+
Sbjct: 790 ILITSFS 796



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++ A R  +EM+   + P+    +SII G  + GK  EA++  + M    + P  
Sbjct: 866 CRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTV 925

Query: 210 DTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            T+  L+ +  K  K+ D + +  ++M+L     D ++YN+LI
Sbjct: 926 ATFTTLMHSLCKESKIADALHL-KRLMELCRLKVDVVSYNVLI 967



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+G L E GL++ AV+  ++M    + P   +++ +I  +S+  K + AL   N MK ++
Sbjct: 757 ILG-LSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLH 815

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           LSP S T+  +I    +    D+    L  M   G  P+H  Y  L+      G + R
Sbjct: 816 LSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDR 873



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 21/217 (9%)

Query: 134 KSR---INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           KSR   IN+     +I   C+ G + +A +  + M    + P +  Y+++I+G  ++ K 
Sbjct: 356 KSRGITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKM 415

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLI-----QAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           +E    L+ M++  + P    Y  LI       Y K  +   +D+  +     G   + +
Sbjct: 416 HETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRR-----GLVANPV 470

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            +N L++ F   G++   E   + M    +   S +   I+D+Y + G + +    Y  +
Sbjct: 471 IHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDM 530

Query: 306 L----NSRTPLKEDLVRKLAE----VYIKNYMFSRLD 334
           +    +      ++L+R L +    V  K +MF  LD
Sbjct: 531 VRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLD 567



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL---EIYNSIIHGYSKIGKFNEAL 194
           N    Q ++  LC+ G     V+A Q M      PS    + +N+++ G  K G  +EAL
Sbjct: 538 NVCTYQNLLRGLCQGG---HLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEAL 594

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
               +M + N  P   TY  L+  +  K K+   + M L+MM   G  PD + Y  L+  
Sbjct: 595 DICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVM-LQMMLEKGVVPDTVAYTCLLNG 653

Query: 254 FACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               G +K     ++ ++ K  ++       ++++ Y+  G ++ +++    +  +    
Sbjct: 654 LINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYP 713

Query: 313 KEDLVRKLAEVYIKNYMFSR 332
                  L   Y+K   FS+
Sbjct: 714 NSASYNILMHGYVKRGQFSK 733



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 23/221 (10%)

Query: 49   CLSSAPSLDYHSTKHTTLLVESY--HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHF 106
            CL  +PS    S     L+ ++Y    H+ L+              ++LQ        H+
Sbjct: 813  CLHLSPSSKTFSAMINGLIRKNYLDQSHEVLH--------------EMLQVGLQPNHTHY 858

Query: 107  WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
             A++       R  +I + F + + ++   I   E     II  LC  G +EEAV  F  
Sbjct: 859  IALV---NAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSN 915

Query: 165  MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK- 223
            M    + P++  + +++H   K  K  +AL     M+   L     +Y+ LI    K K 
Sbjct: 916  MMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLCKDKH 975

Query: 224  MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + D +D+    MK  G  P+  TY  L       G ++  E
Sbjct: 976  ISDALDL-YGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGE 1015



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    E+  M  A+R F  M+   L PS + ++++I+G  +    +++   L+EM ++ 
Sbjct: 791 LITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVG 850

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK 261
           L P    Y  L+ A  +     EID   ++   MK  G  P  +  + +I+     G L+
Sbjct: 851 LQPNHTHYIALVNAKCR---VGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLE 907

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAIL 286
                + +M+   M    +T   ++
Sbjct: 908 EAVIVFSNMMRSGMVPTVATFTTLM 932


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 148/343 (43%), Gaps = 36/343 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++  LC +GL+  A++   EM      P ++ YN +I+G  K+G  ++A
Sbjct: 360 KPDIVVYNS--LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 417

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + +N+       P   T++ LI  Y K    D     ++ M   G +PD ITYN ++  
Sbjct: 418 TVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 477

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTPL 312
              AG +  +  T++ M+ K  H    T   +++   NF   +KME+  K ++  S+  L
Sbjct: 478 LCKAGKVNEVNETFQEMILKGCHPNPITYNILIE---NFCRSNKMEEASKVIVKMSQEGL 534

Query: 313 KEDLV--RKLAEVYIKN-------YMFSRLDDLG-----DDLASRIGRTELVWCLRLLSH 358
             D V    L   + +N        +F +L++ G     D   + IG           + 
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG-----------AF 583

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           +  L+    + +  EM S   R +  T  +++    K  +     + L E+  +   P +
Sbjct: 584 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 643

Query: 419 VTIGILYDARRIG---FDGTGALEMWKRIGFLFKTVE--INTD 456
            T G + ++  +    F   G + +  +IG + + V+  +N D
Sbjct: 644 STFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNAD 686



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN F     I  LCE G + EAVR    M  +A+ P +  YN++I G  K     EA+ +
Sbjct: 222 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHY 280

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M      P   TY+ +I  Y K  M  E    LK     G  PD +TY  LI     
Sbjct: 281 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 340

Query: 257 AGLLKR 262
            G ++R
Sbjct: 341 EGDVER 346



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 146/371 (39%), Gaps = 50/371 (13%)

Query: 92  LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLC 150
           L+ L H G      +  V+  L     +    Q+FD M        +  FN  K++  LC
Sbjct: 146 LRALPHRGAVA---YCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN--KVLHALC 200

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           + G + EA     ++    +  +L  YN  I G  + G+  EA+  ++ M+   + P   
Sbjct: 201 KRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVV 259

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           TY+ LI+   K  M  E    L+ M   GC PD  TYN +I  +    +++      K  
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 319

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
           + K       T  ++++     G +++  + +         +K D+V       + N + 
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNE--AQAKGIKPDIV-------VYNSLV 370

Query: 331 SRLDDLGDDLASRIGRTELVWCLR-LLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
             L                  CL+ L+ HA          V+ EM       ++ T NI+
Sbjct: 371 KGL------------------CLQGLILHAL--------QVMNEMAEEGCHPDIQTYNIV 404

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA--RRIGFDGTGALEMWKRI--- 444
           +    KM +     V++++   +   PD+ T   L D   +R+  D   AL++ +R+   
Sbjct: 405 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLD--SALQLVERMWEY 462

Query: 445 GFLFKTVEINT 455
           G    T+  N+
Sbjct: 463 GIAPDTITYNS 473


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F++++++EK  S ++    + II  L + G ++ A + FQ+M+   L+PS  +++S++
Sbjct: 292 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 351

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               K G+ + ++    EM+     P +  +  LI +Y K    D        MK  G  
Sbjct: 352 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 411

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+   Y ++I+  A +G L+     +K M         ST   +L+ +   G +D   K 
Sbjct: 412 PNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471

Query: 302 YKRLLNS 308
           Y  + N+
Sbjct: 472 YNSMTNA 478



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           ++S ++   F +++ +++ ++    S    ++  + + G ++ +++ + EM+GF  +PS 
Sbjct: 320 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 379

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            ++ S+I  Y+K GK + AL   +EMK+    P    Y  +I+++ K    +      K 
Sbjct: 380 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKD 439

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+  G  P   TY+ L++  A +G +      Y SM    +    S+ +++L    N  +
Sbjct: 440 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRL 499

Query: 295 LD 296
           +D
Sbjct: 500 VD 501



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 38/251 (15%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +  + + +++ ++     +W  ++KS  R N      II    + G +E A+  F++ME 
Sbjct: 383 VSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEK 442

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P+   Y+ ++  ++  G+ + A+   N M    L P   +Y  L+      ++ D 
Sbjct: 443 AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDV 502

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  MK  G S D    ++L                               M+ I D
Sbjct: 503 AGKILLEMKAMGYSVDVCASDVL-------------------------------MIYIKD 531

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           A ++  +     K+ + + +S       ++R+L E  +KN ++     L + L    G+ 
Sbjct: 532 ASVDLAL-----KWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKV 586

Query: 348 ELVWCLRLLSH 358
           +LV    +L+H
Sbjct: 587 DLVLYTSILAH 597


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 133/326 (40%), Gaps = 8/326 (2%)

Query: 128 MWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           ++  IE  +I E + Q    II    + G +  A+     ++G  L P      ++I   
Sbjct: 243 IYAEIESDKI-ELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITAL 301

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
              G+  EA     E+KE  L P++  Y+ L++ Y K     + +  +  M+  G SPD 
Sbjct: 302 GNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDE 361

Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
            TY+LLI  +A AG  +      K M    +   S     IL +Y + G   K  +  + 
Sbjct: 362 HTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLRE 421

Query: 305 LLNSRTPLKEDLVRKLAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
           + NS           + + + K N +   L          +    + W   +  H     
Sbjct: 422 MRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 481

Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
           H   + +   M+ +      TT NI++ ++ + + ++ ++ LL ++ ++ +  ++VT   
Sbjct: 482 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 541

Query: 424 LYD--ARRIGF-DGTGALEMWKRIGF 446
           L D   +   F D    LE+ K +G 
Sbjct: 542 LVDIYGQSGRFKDAIECLEVMKSVGL 567



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + GL E+A+ AF+ M    LKPS+ + NS+I+ + +  +  EA   L  MKE +
Sbjct: 577 LINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEND 636

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  L++A  + + +D++    + M L GC+PD     +L         L+ ME
Sbjct: 637 LKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAML------RSALRYME 690

Query: 265 GTYKS 269
            T KS
Sbjct: 691 RTLKS 695



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           AVI  L N+ R+ +   +F+  K      R   +N+  ++    + G +++A     EME
Sbjct: 296 AVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA--LLKGYVKTGSLKDAESIVSEME 353

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
                P    Y+ +I  Y+  G++  A + L EM+   + P S  +  ++ +Y     + 
Sbjct: 354 RSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQ 413

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           +    L+ M+  G SPD   YN++I  F     L     T+  M  + +   + T   ++
Sbjct: 414 KSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLI 473

Query: 287 DAYMNFGMLDKMEKFYKRLLNS 308
           D +   G  +K E+ ++ +  S
Sbjct: 474 DCHCKSGHHNKAEELFEAMQES 495



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +  + G  ++A+   + M+   LKPS  +YN++I+ Y++ G   +A+     M+   
Sbjct: 542 LVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADG 601

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P     + LI A+G+ +   E    L+ MK +   PD +TY  L++         ++ 
Sbjct: 602 LKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVP 661

Query: 265 GTYKSM 270
             Y+ M
Sbjct: 662 AVYEEM 667



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G   +A   F+ M+     P    YN +I+ + +  ++ +    L +M+   L    
Sbjct: 477 CKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANV 536

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  L+  YG+   + +   CL++MK  G  P    YN LI  +A  GL ++    ++ 
Sbjct: 537 VTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRV 596

Query: 270 M 270
           M
Sbjct: 597 M 597



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 70/143 (48%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++ A+  F  M    ++P    +N++I  + K G  N+A      M+E   SP + TY+ 
Sbjct: 447 LDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNI 506

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I ++G+ + ++++   L  M+  G   + +TY  L+  +  +G  K      + M +  
Sbjct: 507 MINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVG 566

Query: 275 MHLRSSTMVAILDAYMNFGMLDK 297
           +   S+   A+++AY   G+ ++
Sbjct: 567 LKPSSTMYNALINAYAQRGLSEQ 589



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    E+   E+      +M+   L  ++  Y +++  Y + G+F +A+  L  MK + 
Sbjct: 507 MINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVG 566

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L P S  Y+ LI AY +  + ++     ++M+ DG  P  +  N LI  F 
Sbjct: 567 LKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFG 617


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R +    +++K +E    R N      +I  LC  G   +A +   +M    + P+L  +
Sbjct: 274 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 333

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I  + K GKF EA    ++M + ++ P   TY+ L+  +  +   D+     + M  
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRME-GT--YKSMLTKRMHLRSSTMVAILDAYMNFGM 294
             C PD +TYN LI+ F  +   KR+E GT  ++ M  + +   + T   ++    + G 
Sbjct: 394 KDCFPDVVTYNTLIKGFCKS---KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450

Query: 295 LDKMEKFYKRLLNSRTP 311
            D  +K +K++++   P
Sbjct: 451 CDNAQKVFKQMVSDGVP 467



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 29/314 (9%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
            EAV     M     +P+L  Y  +++G  K G  + AL  LN+M+   +      ++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I +  KY+  D+     K M+  G  P+ +TY+ LI      G           M+ K++
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY------- 328
           +    T  A++DA++  G   + EK Y           +D++++  +  I  Y       
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLY-----------DDMIKRSIDPDIFTYNSLVNGF 375

Query: 329 -MFSRLD---DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            M  RLD    + + + S+    ++V    L+   C  S R  D   + REM    +  +
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC-KSKRVEDGTELFREMSHRGLVGD 434

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
             T   ++       D  + + +  ++ +  V PDI+T  IL D    G    G LE   
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD----GLCNNGKLEKAL 490

Query: 443 RIGFLFKTVEINTD 456
            +    +  EI  D
Sbjct: 491 EVFDYMQKSEIKLD 504



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  II  LC+   +++A+  F+EME   ++P++  Y+S+I      G++++A   L++
Sbjct: 263 FNT--IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  ++P   T++ LI A+ K   + E +     M      PD  TYN L+  F     
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380

Query: 260 LKRMEGTYKSMLTK 273
           L + +  ++ M++K
Sbjct: 381 LDKAKQMFEFMVSK 394



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 11/309 (3%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +      +  FN+  +I    +EG   EA + + +M   ++ P +  YNS+++G+  
Sbjct: 320 DMIEKKINPNLVTFNA--LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             + ++A      M   +  P   TY+ LI+ + K K  ++     + M   G   D +T
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y  LIQ     G     +  +K M++  +     T   +LD   N G L+K  + +  + 
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            S   L   +   + E   K        DL   L+ +  +  +V    ++S  C  S R 
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRL 555

Query: 367 ID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
           +    +++++M+      N  T N ++ A+L+  D      L+ E+ +     D  TIG+
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 615

Query: 424 ----LYDAR 428
               L+D R
Sbjct: 616 VANMLHDGR 624



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G  + A+    +ME   ++  + I+N+II    K    ++AL    EM+   
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 290

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI     Y  + +    L  M     +P+ +T+N LI  F   G     E
Sbjct: 291 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 350

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             Y  M+ + +     T  ++++ +     LDK ++ ++ +++
Sbjct: 351 KLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 58/288 (20%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    +  A+    +M     +PS+   +S+++GY    + ++A+  +++M EM 
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + T+  LI     +    E    +  M   GC P+ +TY +++      GL KR  
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN-----GLCKRG- 239

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                                 D  +   +L+KME                  +  A+V 
Sbjct: 240 ----------------------DTDLALNLLNKMEA----------------AKIEADVV 261

Query: 325 IKNYMFSRL------DD---LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS--VVR 372
           I N +   L      DD   L  ++ ++  R  +V    L+S  CL S+ R  D+  ++ 
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS--CLCSYGRWSDASQLLS 319

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +M   K+  N+ T N ++ A++K   F     L  ++  R + PDI T
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 367


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/368 (19%), Positives = 160/368 (43%), Gaps = 11/368 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +++    +I    +EGL ++A+   Q+ME   ++  L +Y+++I    K+  +++A+   
Sbjct: 8   DKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIF 67

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + +K   ++P    Y+ +I  +GK K++ E    +  M+  G  PD ++Y  L+  +   
Sbjct: 68  SRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVEN 127

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
                    +  M   +  L  +T   ++D Y   GM  + +K +  +   +  ++ ++V
Sbjct: 128 KKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSM--RKLGVEPNVV 185

Query: 318 --RKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
               L  VY    +F     L   +  + I +  + +   ++ +   L H   +++++EM
Sbjct: 186 SYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +S  +  N  T + I+  + K+       +L  +L +  ++ D     +LY    + ++ 
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEID----QVLYQTMIVAYER 301

Query: 435 TGALEMWKRIGFLFKTVE-INTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493
            G +   KR+    KT + I  D  +  + G G  +     V+         K    ++ 
Sbjct: 302 AGLVSHAKRLLHELKTPDNIPRDTAIQILAGSGR-MEEATWVFRQAIDAGEVKDITVFEQ 360

Query: 494 LIDLVIKH 501
           +IDL  K+
Sbjct: 361 MIDLFSKY 368



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 27/266 (10%)

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
           AL P    Y+++I  + K G F++AL +L +M+   +      Y  LI+   K   Y + 
Sbjct: 4   ALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKA 63

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                 +K  G +PD + YN +I  F  A L +        M T  +   + +   +L  
Sbjct: 64  ISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTM 123

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
           Y+         K +   L+    ++E  ++ L ++   N M      LG  +A    +  
Sbjct: 124 YVE-------NKKFIEALSVFAEMRE--IKCLLDLTTCNIMIDVYGQLG--MAKEADK-- 170

Query: 349 LVWCLRLLS-HACLLSHRGIDSV-------------VREMESAKVRWNVTTANIILLAYL 394
           L W +R L     ++S+  +  V              R M+   +  NV T N +++ Y 
Sbjct: 171 LFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYG 230

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVT 420
           K  + +    L+ E+ +R ++P+ +T
Sbjct: 231 KTLEHEKANNLIQEMQSRGIEPNAIT 256


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 125/304 (41%), Gaps = 12/304 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N ++   +I +L +     EA+  ++ M     +PSL+ Y+S++ G  K       +  
Sbjct: 188 LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGL 247

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM+ + L P   T+   I+  G+    +E    LK M  +GC PD +TY +LI     
Sbjct: 248 LKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCT 307

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP---L 312
           A  L   +  +  M T R      T + +LD + +   LD + +F+  +  +   P    
Sbjct: 308 ARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVT 367

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--V 370
              LV  L +       F++LD + D      G    +     L    L  HR  D+  +
Sbjct: 368 FTILVDALCKAGNFGEAFAKLDVMRDQ-----GILPNLHTYNTLICGLLRVHRLDDALEI 422

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI-LYDARR 429
              MES  V+    T  + +  Y K  D         ++ T+ + P+IV     LY   +
Sbjct: 423 FDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 482

Query: 430 IGFD 433
            G D
Sbjct: 483 AGRD 486



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM- 203
            ++  LC  G ++E +  F+E++   L P +  YN II+G  K  +  EAL+  NEMK+  
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSR 1028

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             ++P   TY+ LI   G   M +E       ++  G  P+  T+N LI+ ++ +G  +  
Sbjct: 1029 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1088

Query: 264  EGTYKSMLTKRMHLRSST 281
               Y++M+T      + T
Sbjct: 1089 YAVYQTMVTGGFSPNTGT 1106



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 117/285 (41%), Gaps = 27/285 (9%)

Query: 151  EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQS 209
            + G ++E    ++EM     +P+   +N +I G  K G  ++AL L+ + M + + SP +
Sbjct: 834  KSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 893

Query: 210  DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             TY  LI    K     E     + M   GC P+   YN+LI  F  AG        +K 
Sbjct: 894  CTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKR 953

Query: 270  MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYI 325
            M+ + +     T   ++D     G +D+   +++ L    LN        ++  L +   
Sbjct: 954  MVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGK--- 1010

Query: 326  KNYMFSRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR-------EME 375
                F RL++   L +++    G T       L ++  L+ + GI  +V        E++
Sbjct: 1011 ----FHRLEEALVLFNEMKKSRGITP-----DLYTYNSLILNLGIAGMVEEAGKIYNEIQ 1061

Query: 376  SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             A +  NV T N ++  Y      +H   +   + T    P+  T
Sbjct: 1062 RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1106



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 13/192 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +   ++EA + F  M+   LKP++  YN+++ G  K GK  EA+     M +  
Sbjct: 546 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 605

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM--KLD-GCSPDHITYNLLIQEFACAGLLK 261
             P + T++ L     K    DE+ + LKM+   +D GC PD  TYN +I      G +K
Sbjct: 606 CPPNTITFNTLFDCLCKN---DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVK 662

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLK---EDL 316
                +  M  K ++    T+  +L   +  G+++   K     L S    P     EDL
Sbjct: 663 EAMCFFHQM-KKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDL 721

Query: 317 VRK-LAEVYIKN 327
           +   LAE  I N
Sbjct: 722 MGSILAEAGIDN 733



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 36/181 (19%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK------------------ 186
            +I  L + G + EA + F+ M  +  +P+  IYN +I+G+ K                  
Sbjct: 899  LIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 958

Query: 187  -----------------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
                             +G+ +E L +  E+KE  L+P    Y+ +I   GK+   +E  
Sbjct: 959  VRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEAL 1018

Query: 230  MCL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            +   +M K  G +PD  TYN LI     AG+++     Y  +    +     T  A++  
Sbjct: 1019 VLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRG 1078

Query: 289  Y 289
            Y
Sbjct: 1079 Y 1079



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L  + R R+  Q+F   K+I     +      ++    + G ++EA++   EM     +P
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEP 538

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            + + NS+I+   K  + +EA      MKEM L P   TY+ L+   GK     E     
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598

Query: 233 KMMKLDGCSPDHITYNLL 250
           + M   GC P+ IT+N L
Sbjct: 599 EGMVQKGCPPNTITFNTL 616



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 19/264 (7%)

Query: 168  FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              ++P L  YN +I G  +      A     ++K     P   TY+ L+ AYGK    DE
Sbjct: 781  LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDE 840

Query: 228  IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAIL 286
            +    K M    C P+ IT+N++I     AG +      Y  +++ R     + T   ++
Sbjct: 841  LFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 900

Query: 287  DAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAEVYIKNYMFSRLDDLG-- 337
            D     G L + ++ ++ + +        +   L+    K  E      +F R+   G  
Sbjct: 901  DGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 960

Query: 338  DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
             DL +    + LV CL ++         G+    RE++ + +  +V   N+I+    K  
Sbjct: 961  PDLKT---YSVLVDCLCMVGRV----DEGL-HYFRELKESGLNPDVVCYNLIINGLGKFH 1012

Query: 398  DFKHLRVLLSEL-PTRHVKPDIVT 420
              +   VL +E+  +R + PD+ T
Sbjct: 1013 RLEEALVLFNEMKKSRGITPDLYT 1036



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G   EA + F  ++   L P    YN ++  YSK+G+ +EA+  L+EM E    P 
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPD 539

Query: 209 SDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
               + LI    K    DE   + M +K MKL    P  +TYN L+      G ++    
Sbjct: 540 VIVVNSLINTLYKADRVDEAWKMFMRMKEMKL---KPTVVTYNTLLAGLGKNGKIQEAIE 596

Query: 266 TYKSMLTKRMHLRSSTMVAILD 287
            ++ M+ K     + T   + D
Sbjct: 597 LFEGMVQKGCPPNTITFNTLFD 618



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  F++M+   + P++   N+ ++  +K G+  EA      +K++ L P S TY+ +++
Sbjct: 454 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 513

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            Y K    DE    L  M  + C PD I  N LI 
Sbjct: 514 CYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLIN 548



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 37/186 (19%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEG 167
           I  L   S +R +  V   W  +EK   + +  +  I +  LC+ G   EA      M  
Sbjct: 334 ITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD 393

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK------ 221
             + P+L  YN++I G  ++ + ++AL   + M+ + + P + TY   I  YGK      
Sbjct: 394 QGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVS 453

Query: 222 ---------------------YKMYD--------EIDMCLKMMKLDGCSPDHITYNLLIQ 252
                                  +Y         E       +K  G  PD +TYN++++
Sbjct: 454 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 513

Query: 253 EFACAG 258
            ++  G
Sbjct: 514 CYSKVG 519



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 153  GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            G++EEA + + E++   L+P++  +N++I GYS  GK   A      M     SP + TY
Sbjct: 1048 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107

Query: 213  DGL 215
            + L
Sbjct: 1108 EQL 1110



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 155  MEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
            +EEA+  F EM+    + P L  YNS+I      G   EA    NE++   L P   T++
Sbjct: 1014 LEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFN 1073

Query: 214  GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             LI+ Y      +      + M   G SP+  TY  L
Sbjct: 1074 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 10/153 (6%)

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +LF    K++ + P+  TY+ LI    +  M +        +K  GC PD  TYN L+  
Sbjct: 772 MLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDA 831

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR---- 309
           +  +G +  +   YK M        + T   ++   +  G +D     Y  L++ R    
Sbjct: 832 YGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP 891

Query: 310 -----TPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
                 PL + L  K   +Y    +F  + D G
Sbjct: 892 TACTYGPLIDGL-SKSGRLYEAKQLFEGMSDYG 923



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G +EE    F  M+   +K     Y +I    S  G   +A   L +M+E      + +
Sbjct: 133 DGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYS 192

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF-------ACAGLLKRME 264
           Y+GLI    K +   E     + M LDG  P   TY+ L+          +  GLLK ME
Sbjct: 193 YNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEME 252


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 22/340 (6%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL 154
           L H  D T   F  +IR L    +  +   +FD     E  + N      +I  LC++  
Sbjct: 109 LGHQPDATT--FTTLIRGLCVEGKIGEALHLFDKMIG-EGFQPNVVTYGTLINGLCKDRQ 165

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA   F EM    + P++  YNS+IHG  K+ ++      +NEM +  + P   T + 
Sbjct: 166 VTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNT 225

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           ++ A  K  M  E    + MM   G  P+ +TYN L+        +      + +M+ K 
Sbjct: 226 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 285

Query: 275 MHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
                 +   +++ Y     +DK     E+  ++ L   T     L+  L  V       
Sbjct: 286 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHV------- 338

Query: 331 SRLDD---LGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVT 384
            RL D   L  ++ +R    +LV    L  + C   +R +D   ++++ +E +    ++ 
Sbjct: 339 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC--KNRHLDKAMALLKAIEGSNWDPDIQ 396

Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               IL    +  + +  R L S L ++ ++P++ T  I+
Sbjct: 397 IYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 436



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 128/297 (43%), Gaps = 24/297 (8%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   +++A+   + +EG    P ++IY +I+ G  + G+  +A    + +    L P 
Sbjct: 370 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 429

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ +I    K  +  E       M  +GCSP+  TYNL+ + F       R     +
Sbjct: 430 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 489

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            ML +   +  ST   ++    + G+   +++   +  +S  P    + R L  +++ + 
Sbjct: 490 EMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQM-RSLPPLFLSSS 548

Query: 329 M---------FSRLDDLGDDL---------ASRIGRTELVWCLRLLSHACLLSHRGIDSV 370
                     F+ LDD               S +  T+L+  +  + H     +  + S+
Sbjct: 549 HNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKH-----YSTVLSL 603

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +M+S  +  +V T NI++ ++  ++   +   +L++L     +PD+VT G L + 
Sbjct: 604 STQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNG 660



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 115/295 (38%), Gaps = 11/295 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC+EG++ EA      M    ++P++  YN+++ G+    + + A+   + 
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M   +      +Y+ LI  Y K +  D+     + M     +P+ +TYN LI      G 
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L+     +  M+ +       T   + D       LDK     K +  S       +   
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREME 375
           + +   +        DL  +L+S+ G    VW   ++ H   L  +G+      +  EM 
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSK-GLQPNVWTYNIMIHG--LCKQGLLAEASKLFSEMN 457

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYD 426
                 N  T N+I   +L+  +      LL E+  R    D+ T    +G+L D
Sbjct: 458 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 512



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 11/155 (7%)

Query: 129 WKNIEKSRINEFNSQKI----------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           WK++  + +NE  + KI          +  LC+EG++  A      M    ++P +  Y 
Sbjct: 689 WKHV-TTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYT 747

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           +++ G+    + +EA+   + M      P   +Y+ LI  Y + +  D+    L+ M L 
Sbjct: 748 ALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ 807

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           G   D +TYN LI      G L+     +  M+  
Sbjct: 808 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 842



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 3/237 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I   C+   +++A+  F+EM    L P+   YN++IHG   +G+  +A+   
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM      P   TY  L     K +  D+    LK ++     PD   Y  ++     A
Sbjct: 349 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 408

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L+     + ++ +K +     T   ++      G+L +  K +  +  +     +   
Sbjct: 409 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 468

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
             +   +++N    R  +L +++ +R    ++     L+    +LS  G+D  V+++
Sbjct: 469 NLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVG---MLSDDGLDQSVKQI 522



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           +VFD    + K  +    S  I I   C+   M++A+   ++M    L      YN++IH
Sbjct: 764 KVFDTM--VHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIH 821

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G   +G+   A+   +EM      P   TY  L+    K     E  + LK ++      
Sbjct: 822 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDA 881

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D + YN+ I     AG L+     + ++ +K +     T   ++      G+LD+  K +
Sbjct: 882 DILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLF 941

Query: 303 KRL 305
           +++
Sbjct: 942 RKM 944



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 23/296 (7%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGF------ALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            ++  L + G   + V     M G        + P +  YNS+IH    + ++      L
Sbjct: 637 SVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLL 696

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKM----YDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           NEM    + P    +  ++ A  K  M    +D +DM +K     G  PD +TY  L+  
Sbjct: 697 NEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIK----RGVEPDVVTYTALMDG 752

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSR 309
                 +      + +M+ K       +   +++ Y     +DK    +E+   + L + 
Sbjct: 753 HCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIAD 812

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369
           T     L+  L  V    +  +    L  ++ +     +LV    LL + C   H     
Sbjct: 813 TVTYNTLIHGLCHVGRLQHAIA----LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 868

Query: 370 V-VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V ++ +E + +  ++   NI +    +  + +  R L S L ++ ++PD+ T  I+
Sbjct: 869 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIM 924



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 132/363 (36%), Gaps = 23/363 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC    ++ A  A  ++     +P    + ++I G    GK  EAL   ++M    
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  LI    K +   E       M   G SP+ +TYN LI         K + 
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGML----DKMEKFYKR-----LLNSRTPLKED 315
                M+  ++     T+  ++DA    GM+    D ++    R     ++     +   
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 265

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV---R 372
            +R   +V +K +         D +  +     ++    L++  C +  + +D  +    
Sbjct: 266 CLRNEVDVAVKVF---------DTMVHKDCVANVISYNTLINGYCKI--QSVDKAMYLFE 314

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EM   ++  N  T N ++     +   +    L  E+  R   PD+VT   L D      
Sbjct: 315 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNR 374

Query: 433 DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492
               A+ + K I       +I     +L    +   L    +++S+L     +   WTY 
Sbjct: 375 HLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYN 434

Query: 493 NLI 495
            +I
Sbjct: 435 IMI 437


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 38/308 (12%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I +LC+EG + +AVR  ++M    +     ++ +++ G+ + G    A  +
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM++  L+    TY  LI    +     E +  L+ M+  G   D +TY +LI  +  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +      +  M+ KR+     T  A+ D     G +    +    + +    L    
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN--- 494

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
                 ++  N + + L   G+          L   +R +          ID     M+ 
Sbjct: 495 ------IFTYNSLINGLCKAGN----------LEQAMRTM----------ID-----MDE 523

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           A ++ +V T   I+ A  + K+      LL E+  + +KP IVT  +L +    GF  +G
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMN----GFCMSG 579

Query: 437 ALEMWKRI 444
            +E  KR+
Sbjct: 580 RVEGGKRL 587



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G +  A     EM    L+ ++  YNS+I+G  K G   +A+  + +M E  L P 
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I A  + K  D     L+ M   G  P  +TYN+L+  F  +G ++  +   +
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            ML K +H  ++T  +++  Y     +    + YK +L+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG LC+   ++ A    QEM    +KP++  YN +++G+   G+       L  M E N
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P + TY+ L++ Y   K         K M      P+  TYN+LI+    A  +K   
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
             +  M+ K   L +S+  A++       +L+K +KF
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIR------LLNKKKKF 686



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F    +I  LC+ G +E+A+R   +M+   LKP +  Y +II    +  + + A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM +  + P   TY+ L+  +      +     L+ M      P+  TYN L++++  
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 257 AGLLKRMEGTYKSMLTKRM 275
              +K     YK ML++ +
Sbjct: 613 EKNMKSTTEIYKGMLSQEV 631



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           + KNI  +    +NS  ++   C E  M+     ++ M    + P+   YN +I G+ K 
Sbjct: 592 LEKNIHPN-TTTYNS--LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKA 648

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
               EAL F +EM E      + +Y+ LI+   K K + E     + M+ +  + +   Y
Sbjct: 649 RNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVY 708

Query: 248 NLLI 251
           N  I
Sbjct: 709 NFYI 712


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 31/296 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +  A+    EME   L   +  YN+++ G    G++++A   L +M + +
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI  + K    DE     K M      P+++TYN +I      G L   +
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            T+  M +K       T   ++  +  F M+D+  K ++R+               A+++
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN---------ADIF 352

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLR------LLSHACLLSHRGIDSVVREMESAK 378
             N +      +G     R+      W +       +++H C+L H G+  V  E+ESA 
Sbjct: 353 TYNTLIHGYCQVG---KLRVALDIFCWMVSRRVTPDIITH-CILLH-GL-CVNGEIESAL 406

Query: 379 VRWN----------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V+++          +   NI++    K    +    L   LP   VKPD  T  I+
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 119/289 (41%), Gaps = 17/289 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    +  A+    +M     +PS+  + S++HG+  + +  +A   +  M +  
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLK 261
             P    Y+ LI    K     E+++ L++   M+  G   D +TYN L+     +G   
Sbjct: 172 YEPNVVVYNTLIDGLCK---NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWS 228

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321
                 + M+ + ++    T  A++D ++  G LD+ ++ YK ++ S           + 
Sbjct: 229 DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288

Query: 322 EVYIKNYMFSRLDDLG---DDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREME 375
                  M  RL D     D +AS+     +V    L+S  C    R +D    + + M 
Sbjct: 289 NGLC---MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFC--KFRMVDEGMKLFQRMS 343

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                 ++ T N ++  Y ++   +    +   + +R V PDI+T  IL
Sbjct: 344 CEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 124/311 (39%), Gaps = 48/311 (15%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++R +    +++  +EK   R +      +I  L   G   +A R  ++M    + P++ 
Sbjct: 721 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 780

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            + ++I  + K G   EA     EM   ++ P   TY+ LI  +  +    +      +M
Sbjct: 781 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 840

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK---SMLTKRMHLRSSTMVAILDAYMNF 292
              GC PD +TYN LI  F  +   KR+E   K    M  + +   + T   ++  Y   
Sbjct: 841 VSKGCFPDVVTYNTLITGFCKS---KRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 897

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G L+  +K + R+++    +  D+V            ++ L D                 
Sbjct: 898 GKLNVAQKVFNRMVD--CGVSPDIV-----------TYNILLD----------------- 927

Query: 353 LRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
                  CL ++  I+    +V +++ +++  ++ T NII+    +    K    L   L
Sbjct: 928 -------CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL 980

Query: 410 PTRHVKPDIVT 420
             + VKPD + 
Sbjct: 981 TRKGVKPDAIA 991



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+    +EAV     M+GF   P++ IYN++I+G  K    N AL     M++  +   
Sbjct: 684 FCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRAD 743

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY+ LI        + +    L+ M      P+ I +  LI  F   G L      YK
Sbjct: 744 AVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYK 803

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGML 295
            M+ + +     T  ++++ +   G L
Sbjct: 804 EMIRRSVVPNVFTYNSLINGFCIHGCL 830



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I   C+   +E+ ++ F EM    L      YN++IHGY + GK N A    N M +  
Sbjct: 855  LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 914

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +SP   TY+ L+         ++  + ++ ++      D ITYN++IQ       LK   
Sbjct: 915  VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAW 974

Query: 265  GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              ++S+  K +   +   + ++      G+  + +K  +R+
Sbjct: 975  CLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 1015



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 3/266 (1%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           +M     +PS+    S+++G+ +  +F EA+  ++ M      P    Y+ +I    K +
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
             +        M+  G   D +TYN LI   + +G         + M+ +++        
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           A++D ++  G L +    YK ++             L   +  +        + D + S+
Sbjct: 784 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
               ++V    L++  C  S R  D   +  EM    +  +  T N ++  Y +      
Sbjct: 844 GCFPDVVTYNTLITGFC-KSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 902

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA 427
            + + + +    V PDIVT  IL D 
Sbjct: 903 AQKVFNRMVDCGVSPDIVTYNILLDC 928



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 21/196 (10%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +++K + +S +  N      II  LC  G + +A + F  M      P++  YN++I G+
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCS 241
            K    +E +     M     +    TY+ LI  Y   GK ++  +I  C  + +    +
Sbjct: 327 CKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI-FCWMVSRR--VT 383

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY--MNFGML--DK 297
           PD IT+ +L+           + G  +S L K   +R S     + AY  M  G+   DK
Sbjct: 384 PDIITHCILLHGLC-------VNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436

Query: 298 MEKFYKRLLNSRTPLK 313
           +EK ++  L  R P++
Sbjct: 437 VEKAWE--LFCRLPVE 450



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 54/133 (40%)

Query: 138  NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            + F    +I   C+ G +  A + F  M    + P +  YN ++      GK  +AL+ +
Sbjct: 883  DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 942

Query: 198  NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             ++++  +     TY+ +IQ   +     E     + +   G  PD I Y  +I      
Sbjct: 943  EDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRK 1002

Query: 258  GLLKRMEGTYKSM 270
            GL +  +   + M
Sbjct: 1003 GLQREADKLCRRM 1015



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 44/104 (42%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++  LC  G +E+A+   ++++   +   +  YN II G  +  K  EA      +    
Sbjct: 925  LLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG 984

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
            + P +  Y  +I    +  +  E D   + MK DG  P    Y+
Sbjct: 985  VKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 109/272 (40%), Gaps = 38/272 (13%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           + ++P++  YNS+IHG+      +  LL + EM      P  +TY+ LI    K     E
Sbjct: 4   WGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPE 63

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           ++     MK   C+PD ITY+ LI  F     +      +  ML +       T   +++
Sbjct: 64  VNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVE 123

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
            Y N G++D  E+  + ++ S             +     Y ++ L D G     R+   
Sbjct: 124 GYCNAGLVDDAERLLEEIVAS-------------DCSPDVYTYTSLVD-GFCKVKRM--- 166

Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                        + +HR    V++ M   + + NV     ++ A+           LL 
Sbjct: 167 -------------VEAHR----VLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLE 209

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           E+    V+P+ +T    Y +   GF GTG LE
Sbjct: 210 EMVGNGVQPNAIT----YRSLIGGFCGTGDLE 237



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN +N+  +I  LC+ G + E  R F EM+     P +  Y+ +I G+ K+ + N A   
Sbjct: 45  INTYNT--LIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 102

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++M +    P   T+  L++ Y    + D+ +  L+ +    CSPD  TY  L+  F  
Sbjct: 103 FDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCK 162

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
              +       K M             A++DA+ + G
Sbjct: 163 VKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAG 199



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C    ++  +   +EM      P +  YN++I G  K G+  E     
Sbjct: 9   NMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRLF 68

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEF 254
            EMK    +P   TY  LI  + K    D I+M   +   M      PD +T+  L++ +
Sbjct: 69  GEMKAKFCNPDVITYSCLIGGFCK---LDRINMACTLFDDMLKQAALPDVVTFPTLVEGY 125

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             AGL+   E   + ++         T  +++D +     + +  +  KR+
Sbjct: 126 CNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRM 176


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+IG LC    +E+A + FQEM+   + P +  Y +++  + K+G   +A  + +EM++ 
Sbjct: 127 KVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQD 186

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             +P   TY  LI AY K +     +   +MM  +GC P+ +TY  LI     AG  ++ 
Sbjct: 187 GCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246

Query: 264 EGTYKSM 270
              Y  M
Sbjct: 247 CQIYARM 253



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 2/211 (0%)

Query: 131 NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           ++E    N+     +I   C+ G ++EA   F +M G    P++  Y+S+I    K  + 
Sbjct: 306 SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
           + AL  L +M E + +P    Y  ++    K    DE    + MM+  GC P+ +TY  +
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAM 425

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F  AG + R     + M +K       T   +++     G+LD   K  + +  +  
Sbjct: 426 IDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYW 485

Query: 311 PLKEDLVRKLAEVYIKNYMFS--RLDDLGDD 339
           P    + RK+ E +   ++ S   L +L +D
Sbjct: 486 PKHIGMYRKVIEGFSHEFVASLGLLAELSED 516



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N       LC  G  E+A    +EM      P    Y+ +I       K  +A   
Sbjct: 85  LNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQL 144

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK   ++P   TY  L+  + K  + ++       M+ DGC+P+ +TY  LI  +  
Sbjct: 145 FQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLK 204

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              L R    ++ ML+        T  A++D +   G  +K  + Y R+ N +  + +
Sbjct: 205 TRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPD 262



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 68/263 (25%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           VI +L N+S+   + + F +++ ++++ I    +    ++   C+ GL+E+A   F EM+
Sbjct: 128 VIGYLCNASK---VEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQ 184

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS----PQSDTYDGLI------ 216
                P++  Y ++IH Y K  K + A    NE+ EM LS    P   TY  LI      
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRA----NEIFEMMLSNGCVPNIVTYTALIDGHCKA 240

Query: 217 -------QAYGKYKMYDEID-----------------------------MC--------- 231
                  Q Y + K  D++D                             +C         
Sbjct: 241 GETEKACQIYARMK-NDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR 299

Query: 232 --LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+ M L+GC P+ I Y+ LI  F   G L   +  +  ML         T  +++D  
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 290 MNFGMLDKMEKFYKRLL-NSRTP 311
                LD   K   ++L NS  P
Sbjct: 360 FKDKRLDLALKVLTKMLENSCAP 382



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 122 IPQVFDMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           IP V D++  I  S + E N      ++  LC+   ++EA    + M     +P+  IY+
Sbjct: 260 IPDV-DIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYD 318

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G+ K+GK +EA     +M     SP   TY  LI    K K  D     L  M  +
Sbjct: 319 ALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLEN 378

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT---KRMHLRSSTMVAILDAYMNFGML 295
            C+P+ + Y  ++      G   + +  Y+ ML    K  +    T  A++D +   G +
Sbjct: 379 SCAPNVVIYTEMVDGLCKVG---KTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRV 435

Query: 296 DK 297
           D+
Sbjct: 436 DR 437


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 137/315 (43%), Gaps = 16/315 (5%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR++ + F++++ + +   +++ F    ++  L + G++++A + F++M+     P   
Sbjct: 198 RSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAY 257

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    K G+  + L F +EM     +     Y+ +I+A GK KM D++   L  M
Sbjct: 258 TYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKM 317

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
               C P+  TY+L +   A  G L R+       +  R +L  S    ++ +    G  
Sbjct: 318 IESDCQPNQFTYSLTLDILATEGQLHRLNEVLD--ICDR-YLNKSIYSYLVKSLCKSGHA 374

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL-----GDDLASRIGRTELV 350
            +    + R+ NS      D    + EV   +       DL        + + IG   +V
Sbjct: 375 SEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMV 434

Query: 351 W-CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           +  L  L     +S     ++  +M+++ +  ++ T NI++ +Y ++        L  E+
Sbjct: 435 FSALGKLKQVSFIS-----TLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEM 489

Query: 410 PTRHVKPDIVTIGIL 424
                KPD++T   L
Sbjct: 490 EASSCKPDVITYNTL 504



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           +Q+  +  ++  ++ S I    F    +I      GL+++A   F+EME  + KP +  Y
Sbjct: 442 KQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITY 501

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I+   K G  +EA +   EM+E    P   TY  LI+ +GK    D        M  
Sbjct: 502 NTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIA 561

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           +GC P+ +TYN+L+      G        Y++M  + +   S T          + +L++
Sbjct: 562 EGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSIT----------YSILER 611

Query: 298 MEKFYKRLLNSRTP 311
           +E   +R    R P
Sbjct: 612 LESRSQRTARIRKP 625



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
           L +S H  +A N   +  N   S         GD  +D F +++  L NS ++ +   + 
Sbjct: 368 LCKSGHASEAHNVFCRMWNSHES---------GD--RDAFISMLEVLCNSGKTLEAIDLL 416

Query: 127 DMW--KNIEKSRINEFNSQ-KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
            M   K I+ + I  +N     +G L +   +      F +M+   + P L  YN +I  
Sbjct: 417 HMMPEKGID-TDIGMYNMVFSALGKLKQVSFISTL---FDKMKASGIAPDLFTYNIMISS 472

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           Y ++G  ++A     EM+  +  P   TY+ LI   GK    DE  +  K M+  G  PD
Sbjct: 473 YGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPD 532

Query: 244 HITYNLLIQEFA 255
             TY+ LI+ F 
Sbjct: 533 VFTYSTLIECFG 544


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           SR N      ++  LCE G   +A    ++M    ++P++  + ++I  + K+GK  EA 
Sbjct: 219 SRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              N M +M++ P   TY  LI     Y + DE      +M+ +GC P+ + Y  LI  F
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             +  ++     +  M  K +   + T   ++  Y   G  D  ++ + ++ + R P
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP 395



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC  GL++EA + F  ME     P+  IY ++IHG+ K  +  + +    E
Sbjct: 294 FTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE 353

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M +  +   + TY  LIQ Y      D        M      PD  TYN+L+    C G 
Sbjct: 354 MSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           +++    ++ M  + M +   T   I+      G ++
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 133/340 (39%), Gaps = 40/340 (11%)

Query: 119 SRQIPQVFDMWK--------NIEKSRINEFNSQKIIG---MLCEEGLMEEAV-------R 160
           SR +P + D  +        N     I+ F   +I+G   +LC   ++   V       R
Sbjct: 77  SRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCR 136

Query: 161 A---FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A     +M     +P L  + S+++GY    +  +A+   +++  M   P   TY  LI+
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
              K +  +        M  +G  P+ +TYN L+      G         + M+ +R+  
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP---LKEDLVRKLAEVYIKNYMFSRL 333
              T  A++DA++  G L + ++ Y  ++  S  P       L+  L        M+  L
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC-------MYGLL 309

Query: 334 DDLGD--DLASRIG--RTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTAN 387
           D+      L  R G    E+++    L H    S R  D   +  EM    V  N  T  
Sbjct: 310 DEARQMFYLMERNGCYPNEVIY--TTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +++  Y  +      + + +++ +R   PDI T  +L D 
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 11/289 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC+   +  AV  F +M     +P++  YN+++ G  +IG++ +A   L
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  + P   T+  LI A+ K     E      +M      PD  TY  LI      
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKEDL 316
           GLL      +  M     +        ++  +     + D M+ FY+  ++ +  +   +
Sbjct: 307 GLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE--MSQKGVVANTI 364

Query: 317 VRKLAEVYIKNYMFSRLDDLGDD----LASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
                 V I+ Y      D+  +    ++SR    ++     LL   C         ++ 
Sbjct: 365 T---YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421

Query: 373 E-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           E M   ++  N+ T  II+    K+   +    L   L ++ +KP+++T
Sbjct: 422 EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC  G +E+A+  F+ M    +  ++  Y  II G  K+GK  +A      +    + P 
Sbjct: 408 LCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPN 467

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
             TY  +I  + +  +  E D   K MK DG  P+   Y
Sbjct: 468 VITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 5/242 (2%)

Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
           +FN+AL     M      P    +  L+    K   YD +    + M++ G  P   T N
Sbjct: 63  QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122

Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           +++     +    R       M+         T  ++L+ Y ++  ++     + ++L  
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG- 181

Query: 309 RTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
               K ++V    L     KN   +   +L + + +   R  +V    L++  C +   G
Sbjct: 182 -MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWG 240

Query: 367 IDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             + ++R+M   ++  NV T   ++ A++K+      + L + +    V PD+ T G L 
Sbjct: 241 DAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLI 300

Query: 426 DA 427
           + 
Sbjct: 301 NG 302


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G +  A+R F EM    L P++  YNS+IHG       +  LL + EM      P  +T
Sbjct: 46  QGNLTGAIRVFHEMPDKNL-PNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINT 104

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ LI    K     E +     MK   C+PD ITY+ LI  F     +      +  ML
Sbjct: 105 YNTLIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDML 164

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            +       T   +++ Y N G++D  E+  + ++ S
Sbjct: 165 KQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVAS 201



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           IN +N+  +I  LC+ G + EA R F EM+     P +  Y+ +I G+ K+ + N A   
Sbjct: 102 INTYNT--LIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 159

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++M +    P   T+  L++ Y    + D+ +  L+ M    CSPD  TY  L+ +F  
Sbjct: 160 FDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFC- 218

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSST------MVA---ILDAYMNFGMLDKMEKFYKRLLN 307
              +KRM   ++ +  KRM    S       M A   ++D     G +    +  + +  
Sbjct: 219 --KVKRMVEAHRVL--KRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQ 274

Query: 308 SRTPLKED----LVRKLAE 322
           S TP + D    L+R L +
Sbjct: 275 SGTPPRHDIYVALIRGLCQ 293



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 6/176 (3%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           +K+  N      +I  LC    ++  +   +EM      P +  YN++I G  K G+  E
Sbjct: 61  DKNLPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPE 120

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNL 249
           A     EMK    +P   TY  LI  + K    D I+M   +   M      PD +T+  
Sbjct: 121 ANRLFGEMKAKFCNPDVITYSCLIGGFCK---LDRINMACTLFDDMLKQAALPDVVTFPT 177

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L++ +  AGL+   E   + M+         T  +++D +     + +  +  KR+
Sbjct: 178 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRM 233


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 82/169 (48%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             IIG LC +G  ++  +  +EM G  + P++  ++++I  + K GK  EA    NEM  
Sbjct: 283 SSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVA 342

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             ++P + TY  LI  + K     E +  L +M   GC P+ +TY++LI  +  A  +  
Sbjct: 343 RGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDN 402

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
               +  + +K +   + T   ++  +   G L+  ++ ++ +++   P
Sbjct: 403 GMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP 451



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +++A+  F++M+   +   + IYN IIHG     K ++A      +    + P 
Sbjct: 464 LCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPD 523

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGLLKRMEGTY 267
             TY+ +I    K     E DM  + MK DGC+P   TYN+LI+     +G++  +E   
Sbjct: 524 VLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVE--- 580

Query: 268 KSMLTKRMHLRS----STMVAILDAYMNFGMLDK 297
              L + M +R     ++ + ++   ++ G LDK
Sbjct: 581 ---LIEEMKMRGFAADASTIKMVVVMLSDGRLDK 611



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 7/312 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRINEFNSQK--IIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S       D+++ +E+  I     Q   +I  LC++G +++A+  F EME   +K  + 
Sbjct: 221 KSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVV 280

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y+SII G    G++++    L EM   N+ P   T+  LI  + K     E       M
Sbjct: 281 AYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEM 340

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +PD ITY+ LI  F     L         M++K       T   ++++Y     +
Sbjct: 341 VARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 296 DKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
           D   + +  +  S   L  D V    L + + ++   +   +L  ++ SR     +V   
Sbjct: 401 DNGMRLFCEI--SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYG 458

Query: 354 RLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            LL   C     +    +  +M+ +++   +   NII+              L   L  +
Sbjct: 459 ILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVK 518

Query: 413 HVKPDIVTIGIL 424
            VKPD++T  ++
Sbjct: 519 GVKPDVLTYNVM 530



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 40/310 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     ++  +C+ G    A+  F++ME  ++K S+  Y+ +I    K G  ++AL   
Sbjct: 208 NEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLF 267

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEM+   +      Y  +I        +D+    L+ M      P+ +T++ LI  F   
Sbjct: 268 NEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKE 327

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L   +  Y  M+ + +   + T  +++D +                       KE+  
Sbjct: 328 GKLLEAKELYNEMVARGIAPDTITYSSLIDGF----------------------CKEN-- 363

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EM 374
            +L E    N M        D + S+     +V    L++  C    + +D+ +R   E+
Sbjct: 364 -RLGEA---NQML-------DLMVSKGCEPNIVTYSILINSYC--KAKRVDNGMRLFCEI 410

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
            S  +  +  T N ++  + +       + L  E+ +R V P +VT GIL D      + 
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470

Query: 435 TGALEMWKRI 444
             ALE+++++
Sbjct: 471 QKALEIFEKM 480



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 121 QIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           ++ +  ++++ ++KSR    I  +N   II  +C    +++A   F  +    +KP +  
Sbjct: 469 ELQKALEIFEKMQKSRMILGIGIYNI--IIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
           YN +I G  K G  +EA +   +MKE   +P   TY+ LI+A+ G   +   +++ ++ M
Sbjct: 527 YNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVEL-IEEM 585

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           K+ G + D  T  +++   +      R++ T+  ML+
Sbjct: 586 KMRGFAADASTIKMVVVMLSDG----RLDKTFLDMLS 618



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 130/334 (38%), Gaps = 45/334 (13%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYD 226
           F  +P+   ++++I+G+   G+ +EA+  ++ M EM   P   T + LI     K ++ +
Sbjct: 133 FGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTE 192

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRME--------------- 264
            + +  +M+K  GC  + ITY  ++     +G       L ++ME               
Sbjct: 193 ALVLIDRMVKY-GCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVI 251

Query: 265 -------------GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
                          +  M  K +        +I+    N G  D   K  + ++     
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSV 370
                   L +V++K        +L +++ +R    + +    L+   C  +  G  + +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
           +  M S     N+ T +I++ +Y K K   +   L  E+ ++ +  D VT    Y+    
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVT----YNTLVQ 427

Query: 431 GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG 464
           GF  +G L + K    LF+ +     P  +  YG
Sbjct: 428 GFCQSGKLNVAKE---LFQEMVSRGVPPSVVTYG 458



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C+ G +  A   FQEM    + PS+  Y  ++ G    G+  +AL    +M++  +   
Sbjct: 429 FCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILG 488

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ +I         D+       + + G  PD +TYN++I      GL K+   +  
Sbjct: 489 IGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMI-----GGLCKKGSLSEA 543

Query: 269 SMLTKRM 275
            ML ++M
Sbjct: 544 DMLFRKM 550


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  +M++A   F+EM+   + P+L  +N++I GY K G+  ++   L  + E  
Sbjct: 468 VIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHG 527

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   T+  +I    + K  ++   C   M + G SP+ +TYN+LI      G + R  
Sbjct: 528 FKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSM 587

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              + M T  ++    +  A++ ++   G ++  +K +  +L+
Sbjct: 588 KLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLS 630



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC    +E+A+  F EM  + L P+   YN +IH    IG    ++  L +
Sbjct: 533 FTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRK 592

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+   ++P   +++ LIQ++ +    ++       M   G  PD+ TY   I+ F  +G 
Sbjct: 593 MQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGR 652

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
               +  + SM        S T   ILDA +     +  +K  K
Sbjct: 653 FNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAK 696



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 147/386 (38%), Gaps = 64/386 (16%)

Query: 83  RLNKKVSCPLQILQHDGDWTK-------DHFWAVIRFLKNSSRSRQIPQVFDMW------ 129
           R+N+++ C L      G W +       D  +  I FL  S  +R    V D        
Sbjct: 179 RINEELLCILI-----GSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSL 233

Query: 130 ---------KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
                     + +  + + F    +I  +C  G+++EA+R  ++MEG    P++  Y  +
Sbjct: 234 DLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTIL 293

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I G+    K +EA   L  MK   +SP   T    I  +G ++       C+   K    
Sbjct: 294 IDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFI--HGVFR-------CVAPNKAFEL 344

Query: 241 SPDHITYNLLIQEFACAGLL-----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF--- 292
           + + I    ++Q  AC  LL     K M     ++L K   +      A  +  MN    
Sbjct: 345 AIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIK 404

Query: 293 -----GMLDKMEKFYKRLLNSRTPLKEDLVRKL---AEVYIKNYMFSRLDDLGDDLASRI 344
                 + + +++F ++ +         L++ L    +V   N+ F+++  + D L   +
Sbjct: 405 GFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQM--VKDGLLCNV 462

Query: 345 GRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
               +V         C      +D   +  +EM+   +  N+ T N ++  Y K  +   
Sbjct: 463 CSYNMVI-------DCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICK 515

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA 427
            R LL  L     KPDI T   + D 
Sbjct: 516 SRDLLVMLLEHGFKPDIFTFSSIIDG 541



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 120 RQIPQVF--DMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+ P V   ++ K+I+ S  RINE     +IG     GL +     F ++    + PS  
Sbjct: 159 RKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTR 218

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN++I    K    + A L   +M   N  P   TY+ LI    +  + DE    +K M
Sbjct: 219 LYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQM 278

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           +  G SP+  TY +LI  F  A   K+++  ++ + T +    S +   I
Sbjct: 279 EGLGYSPNVFTYTILIDGFFNA---KKVDEAFRVLETMKARKVSPSEATI 325



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 64/366 (17%), Positives = 137/366 (37%), Gaps = 19/366 (5%)

Query: 143 QKIIGMLCE----EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           Q + G+L      +G +  +V   ++++    + + E+   +I  + ++G          
Sbjct: 147 QSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFG 206

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           ++  + +SP +  Y+ +I A  K    D   +  + M  D C PD  TYN+LI     +G
Sbjct: 207 QISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSG 266

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           ++       K M          T   ++D + N   +D+  +  + +   +    E  +R
Sbjct: 267 VVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIR 326

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI----DSVVREM 374
                  +    ++  +L  +   R    + + C  LL   C LS + +     +++++ 
Sbjct: 327 SFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLL---CCLSSKNMAREAGALLKKF 383

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
                + +  T NI +   +K  D   +  +L     + +K    T    I  LY A ++
Sbjct: 384 GKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKV 443

Query: 431 GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWT 490
             +G        + G L      N   +V+  + K   +      +  ++         T
Sbjct: 444 T-EGNHYFNQMVKDGLLCNVCSYN---MVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499

Query: 491 YQNLID 496
           +  LID
Sbjct: 500 FNTLID 505


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    + P   TY+ L+    K     E       M   G  P+  TY  L+Q +A  
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA   L  
Sbjct: 482 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M  + + P   TY+ LI  Y K    ++  +  + M+  G SPD ITYN+++Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 161/394 (40%), Gaps = 50/394 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR-TP--------------------LKEDLVRKLAE-VYIK 326
               G ++   ++++++++ R +P                     KE ++  L   + + 
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLD 478

Query: 327 NYMFSRLDDLGD------------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR- 372
              F+ + D               DL  RIG + +++    L+   CL     +D   + 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKL 536

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYD 426
              M S  ++ +  T N ++  Y K+   +   VL  E+ +  V PDI+T  I    L+ 
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            RR       A E++  I      +E++T  ++L
Sbjct: 597 TRRT----AAAKELYVGITESGTQLELSTYNIIL 626



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 128/287 (44%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+R F++M    L P   +YNS+IH      K+++A   + EM +  
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  PD ITY+ LI  +  AG +    
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               SM++  M     T   +++ Y     ++     ++ + +S   +  D++     + 
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS--GVSPDIITY--NII 590

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVREMES---A 377
           ++    +R      +L   +G TE    L L ++  +L     +   D  +R  ++    
Sbjct: 591 LQGLFQTRRTAAAKEL--YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    T NI++ A LK+      + L + L    + PD+ T  ++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG +++A   + EM    + P++  Y+SII    K    ++A+  L  M +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M  DG  PD +TYN L+      G      
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC+E   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY  +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +        ++ Y            A++    E+              H  +D +VR   
Sbjct: 339 ITTY--GTLLQGY------------ATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 15/196 (7%)

Query: 67  LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
            + S H H AL++L+ R N  +S PL           +      +  +N           
Sbjct: 77  FISSDHRH-ALHSLLLRPNPALSKPLLDTSLAAYVHANQPHLAFQLFQNELIXXXXXXSI 135

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           D+W          +N+  ++  LC+EG ++EA+R   EME   L P +  YN++I G  K
Sbjct: 136 DVWT---------YNT--LVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFK 184

Query: 187 IGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDH 244
                E    L EMK    + P + T++ +++ +GK  K+ +  D  +KM++  G SPD 
Sbjct: 185 WRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVE-SGVSPDC 243

Query: 245 ITYNLLIQEFACAGLL 260
            TYN +I  F  AG L
Sbjct: 244 FTYNTMINGFCKAGKL 259



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 1/173 (0%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C+ G + EA R   EM    LKP +   N+++H      K  EA     +
Sbjct: 244 FTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVK 303

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            ++        TY  LI  Y K K  D+     + MK  G  P  ++YN LI+    +G 
Sbjct: 304 ARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGK 363

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
             +       +L K +     +   I+  Y   GM+DK  +F+ +++ NS  P
Sbjct: 364 TDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKP 416



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A++ ++EM+   + PS+  YN +I G    GK ++A+  LNE+ E  L P   + + +
Sbjct: 330 DKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNII 389

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  Y    M D+       M  +   PD  T N+L++      +L++    + S ++K+ 
Sbjct: 390 IHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQN 449

Query: 276 HLRSSTMVAILDAYMNFGMLDK 297
            +   T   ++      G LD+
Sbjct: 450 SVDVVTYNTMISYLCKEGRLDE 471



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E +   II   C EG++++A +   +M G + KP +   N ++ G  ++    +A    
Sbjct: 382 DEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLF 441

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N       S    TY+ +I    K    DE    +  M++    PD  TYN +++    A
Sbjct: 442 NSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHA 501

Query: 258 GLLKRME 264
           G  +  E
Sbjct: 502 GRTEEAE 508



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 24/167 (14%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           ++F+ W + + S ++      +I  LC+EG ++EA     +ME    +P    YN+I+  
Sbjct: 439 KLFNSWISKQNS-VDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRA 497

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
            +  G+  EA  F++++ E              QA   +    E+D           +  
Sbjct: 498 LTHAGRTEEAEKFMSKLSETG------------QAVKTHDTSQELD-----------ASS 534

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            I Y+  I +    G  K     ++    K + L   T + ++D ++
Sbjct: 535 DIMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFL 581


>gi|297825903|ref|XP_002880834.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326673|gb|EFH57093.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 797

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 30/286 (10%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EEA+   QEM+   + P +  Y ++I GY   GK  +AL  ++EM     SP   TY
Sbjct: 401 GRVEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDALDLIDEMIGNGTSPDLITY 460

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+    +    + +    + MK +G  P+ +T N++I+    A  +K  E  + S+  
Sbjct: 461 NVLVSGLARNGHEEAVLEIYERMKAEGLKPNAVTDNVIIEGLCFARKVKEAEDFFMSLEQ 520

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           K    ++S    ++  Y   G+    +K +K  +    PL++        VYIK +    
Sbjct: 521 KCPENKAS----LVKGYCESGL---SKKAFKLFVTLEYPLRK-------SVYIKLFFSLC 566

Query: 333 LDDLGDDLASRIGRTELVW----------CLRLLSHACLLSHRGIDS--VVREMESAKVR 380
           ++   D   + + R   +W          C +++   C L++  ID+  +   M    + 
Sbjct: 567 IEGCLDKAHTVLKR---MWAYRVEPGRSMCGKMIGALCRLNN-AIDAQQLFDTMVERGLI 622

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            ++ T  I++  Y ++ + +    L  ++  R +KPD+VT  +L D
Sbjct: 623 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 668



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 49/111 (44%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+   LC EG +++A    + M  + ++P   +   +I    ++    +A    + M E 
Sbjct: 560 KLFFSLCIEGCLDKAHTVLKRMWAYRVEPGRSMCGKMIGALCRLNNAIDAQQLFDTMVER 619

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L P   TY  +I  Y +     + +   + MK  G  PD +TY +L+  +
Sbjct: 620 GLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRY 670



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 12/166 (7%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K+IG LC      +A + F  M    L P L  Y  +IH Y ++ +  +A     +MK+ 
Sbjct: 595 KMIGALCRLNNAIDAQQLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQR 654

Query: 204 NLSPQSDTYDGLIQAYGKY--------KMYDEI----DMCLKMMKLDGCSPDHITYNLLI 251
            + P   TY  L+  Y K          +  E+       L+     G   D ++Y +LI
Sbjct: 655 GIKPDVVTYTVLLDRYLKLDPEHHETGSVQGEVGKRNSELLREFSASGIGLDVVSYTVLI 714

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
                   L++    +  M+   +        A++ +Y   G +DK
Sbjct: 715 DRQCKMDKLEQAAELFDRMIDSGLEPDIVAYTALISSYFRKGYIDK 760



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C E  ME A     EME     P +   ++II  Y K     EAL FL++M    
Sbjct: 288 VVRGFCNEMKMEAAESVILEMEKIGFGPDVSACSAIIDRYCKNMNLPEALGFLDKMLGKG 347

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           L         ++Q Y K      +DMCL+ ++
Sbjct: 348 LKINCVIVSSILQCYCK------MDMCLEALE 373


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 25/364 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  E+A R F +M+    +P++  Y ++I G    G    A+   + M    + P 
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY+ LI    + +      + L +M  +GCSP+ +TYN +I+ +   G  K+      
Sbjct: 390 TVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMN 449

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE----DLVRKLAEVY 324
           +ML +       T   I+  Y + G      +    + +      E    +L+    ++ 
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 325 IKNYMFSRLDDLGDD--LASRIGRTELV--WCL--RLLSHACLLSHRGIDSVVREMESAK 378
                F   +++ DD    + +  T L+  +C   +L +   LL H         M+ + 
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH---------MKRSG 560

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
            R NV T N+++    K  +F     L   +    + P++VT   + D        + AL
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 439 EMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           EM+ ++   G L   +  ++    L   GK   +   E +++ LE +       TY  +I
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGK---VEEAENLFAELERHGLIPDEITYVKMI 677

Query: 496 DLVI 499
           +  I
Sbjct: 678 EAYI 681



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 4/182 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G    A+R    M     KP    Y  +I G+ KI K   A    NEM +  
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  LI  Y K +  D     L+ MK  GC P+  TYN+LI            E
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD-KMEKFYKRLLNSRTP---LKEDLVRKL 320
              K M+ + +     T  A++D     G     +E F K +     P       L+R L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 321 AE 322
            +
Sbjct: 646 GQ 647



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 5/217 (2%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEE 152
           L  DG    D  W+    +    +  ++   F ++  +    +  NE     +I   C++
Sbjct: 485 LMRDGGCKPDE-WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             ++ A    + M+    +P+++ YN +IHG +K   F+ A      M E  + P   TY
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 213 DGLIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I    K       ++M  KM++  GC P+ +TY+ LI+     G ++  E  +  + 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              +     T V +++AY+  G ++    F  R++ +
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +  ++ A++ F +M     +P+   Y+++I+G    G+ NEA   + EM    + P +
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T  G I A      Y++       MK  GC P+  TY  LI     +GLLK   G +  
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 270 M 270
           M
Sbjct: 381 M 381



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+   +S  +    ++ D+ ++    + +E++  ++I   C+   ME A   F EM   
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P+   Y ++I GY K  K + A   L  MK     P   TY+ LI    K   +   
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +   K+M  +G  P+ +TY  +I      G        +  M+ +       T  +++ A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
               G +++ E  +  L        E    K+ E YI
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  F    ++  L   G+    +  +  M    ++P+L IYN++I+   K G   +A  
Sbjct: 177 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 236

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + ++ E  +SP + TY  +I  + +    D        M  +GC P+ +TY+ LI    
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 256 CAG 258
            +G
Sbjct: 297 DSG 299



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 35/194 (18%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME--------------------------GFAL- 170
           N +    +I  LC  GL++ A+  F  M                            F + 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 171 --------KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                    P++  YN +I GY  +G   +A+L +N M +   S    TY+ +I+ Y   
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                    L +M+  GC PD  +Y  LI  F     ++   G +  M+   +     T 
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 283 VAILDAYMNFGMLD 296
            A++D Y     LD
Sbjct: 534 TALIDGYCKDEKLD 547



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           KN S S  + ++F+  K IE+  + N      +I  L +EG +EEA   F E+E   L P
Sbjct: 612 KNGSTSLAL-EMFN--KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
               Y  +I  Y   GK   A  FL  M +    P   TY  LI+ 
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R +    +++K +E    R N      +I  LC  G   +A +   +M    + P+L  +
Sbjct: 236 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 295

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I  + K GKF EA    ++M + ++ P   TY+ L+  +  +   D+     + M  
Sbjct: 296 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 355

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRME-GT--YKSMLTKRMHLRSSTMVAILDAYMNFGM 294
             C PD +TYN LI+ F  +   KR+E GT  ++ M  + +   + T   ++    + G 
Sbjct: 356 KDCFPDVVTYNTLIKGFCKS---KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 412

Query: 295 LDKMEKFYKRLLNSRTP 311
            D  +K +K++++   P
Sbjct: 413 CDNAQKVFKQMVSDGVP 429



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 29/297 (9%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
            EAV     M     +P+L  Y  +++G  K G  + AL  LN+M+   +      ++ +
Sbjct: 169 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 228

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I +  KY+  D+     K M+  G  P+ +TY+ LI      G           M+ K++
Sbjct: 229 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 288

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY------- 328
           +    T  A++DA++  G   + EK Y           +D++++  +  I  Y       
Sbjct: 289 NPNLVTFNALIDAFVKEGKFVEAEKLY-----------DDMIKRSIDPDIFTYNSLVNGF 337

Query: 329 -MFSRLD---DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
            M  RLD    + + + S+    ++V    L+   C  S R  D   + REM    +  +
Sbjct: 338 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC-KSKRVEDGTELFREMSHRGLVGD 396

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             T   ++       D  + + +  ++ +  V PDI+T  IL D    G    G LE
Sbjct: 397 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD----GLCNNGKLE 449



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  II  LC+   +++A+  F+EME   ++P++  Y+S+I      G++++A   L++
Sbjct: 225 FNT--IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 282

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  ++P   T++ LI A+ K   + E +     M      PD  TYN L+  F     
Sbjct: 283 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 342

Query: 260 LKRMEGTYKSMLTK 273
           L + +  ++ M++K
Sbjct: 343 LDKAKQMFEFMVSK 356



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+ G  + A+    +ME   ++  + I+N+II    K    ++AL    EM+   
Sbjct: 193 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 252

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI     Y  + +    L  M     +P+ +T+N LI  F   G     E
Sbjct: 253 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 312

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             Y  M+ + +     T  ++++ +     LDK ++ ++ +++
Sbjct: 313 KLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 355



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 11/309 (3%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM +      +  FN+  +I    +EG   EA + + +M   ++ P +  YNS+++G+  
Sbjct: 282 DMIEKKINPNLVTFNA--LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 339

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             + ++A      M   +  P   TY+ LI+ + K K  ++     + M   G   D +T
Sbjct: 340 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 399

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y  LIQ     G     +  +K M++  +     T   +LD   N G L+K  + +  + 
Sbjct: 400 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 459

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            S   L   +   + E   K        DL   L+ +  +  +V    ++S  C  S R 
Sbjct: 460 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRL 517

Query: 367 ID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
           +    +++++M+      N  T N ++ A+L+  D      L+ E+ +     D  TIG+
Sbjct: 518 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 577

Query: 424 ----LYDAR 428
               L+D R
Sbjct: 578 VANMLHDGR 586



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 113/288 (39%), Gaps = 58/288 (20%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    +  A+    +M     +PS+   +S+++GY    + ++A+  +++M EM 
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + T+  LI     +    E    +  M   GC P+ +TY +++      GL KR  
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN-----GLCKRG- 201

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                                 D  +   +L+KME                  +  A+V 
Sbjct: 202 ----------------------DTDLALNLLNKMEA----------------AKIEADVV 223

Query: 325 IKNYMFSRL------DD---LGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSVVR 372
           I N +   L      DD   L  ++ ++  R  +V    L+S  CL S+        ++ 
Sbjct: 224 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS--CLCSYGRWSDASQLLS 281

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
           +M   K+  N+ T N ++ A++K   F     L  ++  R + PDI T
Sbjct: 282 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 329


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   +I  LC  G + +A +    M     +PS+  +N ++ GY K GK + AL F 
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           N+MK     P + TY+ LI  + + +     +  L  MK  G  P  +TY +LI  FA
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q  + F +++ + +  +  N +    +IG  C  G  E A   F EM    +  ++  YN
Sbjct: 88  QREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYN 147

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I G  + GK  +A   L+ M+     P   T++ L+  YGK             MK  
Sbjct: 148 TLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAA 207

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN------- 291
           G  P  +TYN+LI  F  A  + R       M  + +     T   ++D++         
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKA 267

Query: 292 FGMLDKMEK 300
           F +L  MEK
Sbjct: 268 FEILAGMEK 276



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 25/304 (8%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+ G + EA R F EM    L P+   Y +++HGY   G+  +      EM+   
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL---- 260
           + P   TY+ LI  + +   ++        M + G   + ++YN LI      G L    
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 261 -----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
                 R EGT  S++T  +         ++D Y   G +     F+ ++  +       
Sbjct: 164 KLLDMMRTEGTRPSIITFNL---------LVDGYGKAGKMSNALPFFNQMKAAGFQPSAV 214

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGID-SVVRE 373
               L   + +    +R +    D+  R +  T++ + + + S A   +H G    ++  
Sbjct: 215 TYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA-RENHMGKAFEILAG 273

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ME A +  +  T  +++ A     + K  R L   +  + V+P      ++YD    G+ 
Sbjct: 274 MEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS----NVIYDMMIYGYG 329

Query: 434 GTGA 437
             G+
Sbjct: 330 REGS 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R   + + F++   +EK+   ++      ++  LC EG M++A + FQ M    ++PS 
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            IY+ +I+GY + G   +AL  + EM++  L P S +Y
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASY 356



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++++G  K G   EA    +EM  + L+P   TY  L+  Y  +   ++     + M+  
Sbjct: 43  ALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRG 102

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           G  P+  TYN LI E+   G  +R    +  M
Sbjct: 103 GVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II  LC+   M++A+     M    + P+   YNSI+HGY   G+  EA+ FL
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M    + P   TY+ L+    K     E       M   G  P+  TY  L+Q +A  
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G L  M G    M+   +H        ++ AY   G +D+    + ++
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FNS  II   C+EG + E+ + F  M    +KP +  Y+++I GY   GK +EA   L  
Sbjct: 482 FNS--IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M  + + P   TY+ LI  Y K    ++  +  + M+  G SPD ITYN+++Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 161/394 (40%), Gaps = 50/394 (12%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +    K  +  + +  +  M KN        +NS  I+   C  G  +EA+   ++M   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS--IVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            ++P +  YNS++    K G+  EA    + M +  L P+  TY  L+Q Y       E+
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
              L +M  +G  P+H  +++LI  +A  G + +    +  M  + ++  + T   ++  
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 289 YMNFGMLDKMEKFYKRLLNSR-TP--------------------LKEDLVRKLAE-VYIK 326
               G ++   ++++++++ R +P                     KE ++  L   + + 
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLD 478

Query: 327 NYMFSRLDDLGD------------DLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR- 372
              F+ + D               DL  RIG + +++    L+   CL     +D   + 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKL 536

Query: 373 --EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYD 426
              M S  ++ +  T N ++  Y K+   +   VL  E+ +  V PDI+T  I    L+ 
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            RR       A E++  I      +E++T  ++L
Sbjct: 597 TRRT----AAAKELYVGITESGTQLELSTYNIIL 626



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 128/287 (44%), Gaps = 13/287 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+ G +E+A+R F++M    L P   +YNS+IH      K+++A   + EM +  
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  ++ +I ++ K     E +    +M   G  PD ITY+ LI  +  AG +    
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
               SM++  M     T   +++ Y     ++     ++ + +S   +  D++     + 
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS--GVSPDIITY--NII 590

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVREMES---A 377
           ++    +R      +L   +G TE    L L ++  +L     +   D  +R  ++    
Sbjct: 591 LQGLFQTRRTAAAKEL--YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            ++    T NI++ A LK+      + L + L    + PD+ T  ++
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG +++A   + EM    + P++  Y+SII    K    ++A+  L  M +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY+ ++  Y       E    LK M  DG  PD +TYN L+      G      
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
             + SM  + +    +T   +L  Y   G L +M
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 358



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 123/299 (41%), Gaps = 40/299 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N F+   ++  LC++   +EA+   Q M  +G    P +  Y ++I+G+ K G  ++A  
Sbjct: 161 NVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM +  + P   TY  +I A  K +  D+    L  M  +G  P+  TYN ++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
            +G  K   G  K M +  +     T  +++D     G   +  K +  +  ++  LK +
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM--TKRGLKPE 338

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           +        ++ Y            A++    E+              H  +D +VR   
Sbjct: 339 ITTY--GTLLQGY------------ATKGALVEM--------------HGLLDLMVRN-- 368

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDARRI 430
              +  N    +I++ AY K        ++ S++  + + PD VT    IGIL  + R+
Sbjct: 369 --GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 138/326 (42%), Gaps = 10/326 (3%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +I  L N  R ++  ++F+       +  N      ++ +LC++G++ EA   F+ M
Sbjct: 159 FTTLINGLCNEGRIKEAVELFNEMAG-RDAMPNTVTFTILVDVLCKKGMVSEARCVFETM 217

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               ++P++  YN++++GY    + N+A      M     +P   +Y  LI  Y K +  
Sbjct: 218 TEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRI 277

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           DE    L  M      P+ +TYN L+Q    A  L   +  +K M +  M     T   +
Sbjct: 278 DEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSIL 337

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI- 344
           LD     G L++  K    +   +  L+ D+V  L  + I+    +   ++  +L S++ 
Sbjct: 338 LDGLCKHGHLEEALKLLTSMQERK--LEPDIV--LYNILIQGMFIAGKLEVAKELFSKLF 393

Query: 345 --GRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFK 400
             G    V    ++    L      ++  + R+ME      +  + N+I+  +L+ +D  
Sbjct: 394 ANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPS 453

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYD 426
               L+ E+  R    D  T  +L D
Sbjct: 454 TAIQLIDEMVGRRFSADSSTFKMLLD 479



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 130/351 (37%), Gaps = 54/351 (15%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVR 160
           +  F  + +FL + ++ +Q   V  +   ++   +  N++    +I  LC    +  AV 
Sbjct: 83  RPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVS 142

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
              +M    ++P    + ++I+G    G+  EA+   NEM   +  P + T+  L+    
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLC 202

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K  M  E     + M   G  P+  TYN L+  +                    + L  +
Sbjct: 203 KKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYC-------------------LRLEMN 243

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
               + +  +  G    +  +                     + I  Y  SR  D    L
Sbjct: 244 DASKVFEIMVGKGCAPSVHSY--------------------SILINGYCKSRRIDEAKAL 283

Query: 341 ASRIGRTELV-------WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
            +++   EL+         ++ L HA  L       + ++M S+ +  N+ T +I+L   
Sbjct: 284 LTQMSEKELIPNTVTYNTLMQGLCHASSLLEA--QELFKKMCSSGMLPNLRTYSILLDGL 341

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            K    +    LL+ +  R ++PDIV   IL     I     G LE+ K +
Sbjct: 342 CKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIA----GKLEVAKEL 388


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC EG + EA     +M G  L   +  Y +I++G  K+G    AL  L++
Sbjct: 224 FNT--LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 281

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E ++ P    Y  +I    K   + +       M   G +P+  TYN +I  F   G 
Sbjct: 282 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 341

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +   + M+ + ++    T  A++ A +  G L + EK    +L+            
Sbjct: 342 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 401

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMES 376
           +   + K+  F     + D +AS     ++V    ++   C    + +D    ++RE+  
Sbjct: 402 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYC--RAKRVDEGMQLLREISR 455

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N TT N ++  + ++ +    + L  E+ +  V PD +T  IL            
Sbjct: 456 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 515

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
           ALE+++ I      ++++T    + ++G  KG  +    +++ SL  +  E    TY  +
Sbjct: 516 ALELFEVIQ--MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 573

Query: 495 I 495
           I
Sbjct: 574 I 574



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G   +A R  ++M    + P +  +N++I    K GK  EA    
Sbjct: 325 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 384

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P + TY+ +I  + K+  +D+      +M     SPD +T+N +I  +  A
Sbjct: 385 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRA 440

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              KR++        + M L                    + +  +R L + T     L+
Sbjct: 441 ---KRVD--------EGMQL--------------------LREISRRGLVANTTTYNTLI 469

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES- 376
               EV   N       DL  ++ S     + + C  LL   C   +  ++  +   E  
Sbjct: 470 HGFCEVDNLN----AAQDLFQEMISHGVCPDTITCNILLYGFC--ENEKLEEALELFEVI 523

Query: 377 --AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
             +K+  +    NII+    K         L   LP   V+PD+ T    Y+    GF G
Sbjct: 524 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT----YNVMISGFCG 579

Query: 435 TGAL 438
             A+
Sbjct: 580 KSAI 583



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            CE   +EEA+  F+ ++   +      YN IIHG  K  K +EA      +    + P 
Sbjct: 507 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 566

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             TY+ +I  +       + ++    MK +G  PD+ TYN LI+    AG + +
Sbjct: 567 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 620



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 118 RSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            + ++ +  ++++ I+ S+I+        II  +C+   ++EA   F  +    ++P ++
Sbjct: 509 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 568

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+      ++A +  ++MK+    P + TY+ LI+   K    D+    +  M
Sbjct: 569 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 628

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +G S D  T   ++ +    G   R++ ++  ML+
Sbjct: 629 RSNGFSGDAFTIK-MVADLITDG---RLDKSFSDMLS 661



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 2/182 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R++++ +   + + I +  +  N      +I   CE   +  A   FQEM    + P   
Sbjct: 439 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 498

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N +++G+ +  K  EAL     ++   +   +  Y+ +I    K    DE       +
Sbjct: 499 TCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSL 558

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            + G  PD  TYN++I  F     +      +  M        +ST   ++   +  G +
Sbjct: 559 PIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEI 618

Query: 296 DK 297
           DK
Sbjct: 619 DK 620


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 39/277 (14%)

Query: 125 VFDMWKNIEKSR-INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           VFD   ++   R I  +N+   +  +C+ G M  A++   +ME    KP++  Y++++ G
Sbjct: 337 VFDEMIHLGSGRDIYTYNT--FVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDG 394

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSP 242
           +SK+ K++EAL    +MK + +      Y+ L+  Y K   YDEI  +C +M KL G   
Sbjct: 395 FSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKL-GIEK 453

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           D +TYN LI  +   G L  +    + M  + +     T   ++D Y   GM    + F 
Sbjct: 454 DTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGM--HGDAFN 511

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
             L    + LK D+V           +FS   D        + +  LV C          
Sbjct: 512 VYLDFKESGLKADVV-----------LFSSFIDT-------LAKNGLVECAL-------- 545

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
                 S++ EM    ++ NV T N I+ A+ K K F
Sbjct: 546 ------SLLDEMMKMGIKPNVVTYNTIIDAFGKSKIF 576



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 38/321 (11%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           A I  L    R     + FD    I  S  N  F    +I      GL  EA+   + M+
Sbjct: 214 AAIGALGKMGRPDLARRAFD--TGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMK 271

Query: 167 GFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           G  L+P+   YN++I    K G      L +  +M +  L P   T++ L+ A  +    
Sbjct: 272 GAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHL 331

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++       M   G   D  TYN  +      G +         M          T   +
Sbjct: 332 EDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTL 391

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           +D +      D+  K  +++ + R  L       L  +Y+K   +       D++A    
Sbjct: 392 MDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKY-------DEIA---- 440

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
                                  +V  EME   +  +  T N ++  Y K      +  L
Sbjct: 441 -----------------------TVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFL 477

Query: 406 LSELPTRHVKPDIVTIGILYD 426
           + ++  + V P ++T   L D
Sbjct: 478 VQDMRAQGVAPSVLTYSTLID 498



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  + G+  +A   + + +   LK  + +++S I   +K G    AL  L+EM +M 
Sbjct: 496 LIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMG 555

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           + P   TY+ +I A+GK K++ E D  +  M + G
Sbjct: 556 IKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVG 590


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 3/200 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+    R++ + + FD+++ + ++ +  +      ++  LC +G   EA   F+EM+   
Sbjct: 245 FIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG 304

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+   Y ++I   +K G+  E L  L EM    +     TY  L+   GK    DE+ 
Sbjct: 305 AVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVK 364

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             L+    D  S + +TY +LI     A  +   E     M  K +     T  ++++ +
Sbjct: 365 DTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGF 424

Query: 290 MNFGMLDKMEKFYKRLLNSR 309
           +  G+LDK  + YKR++  R
Sbjct: 425 VKRGLLDKATE-YKRMMKER 443



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA+R + EM G    P +  YN++I  ++K G   +A     +M++  + P S TYD L+
Sbjct: 817 EAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             + + +   E+  CLK MK  G SP   T + + + F+  G+
Sbjct: 877 SGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGM 919



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 111 RFLKNSSRSRQIPQVFD----MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           R L+  S+SR++  + D    M      + I  +N+  ++ +LC  G+  +A    +EM 
Sbjct: 664 RVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT--LLQVLCYHGMTRKATVVLEEML 721

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G  + P    +N++I G+ K    + A     +M   N+SP   T++ L+          
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E    L  M+  G  P+++TY++L+               Y  M+ K    + ST  A++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 287 DAYMNFGMLDKMEKFYKRL 305
             +   GM+ + ++ +K +
Sbjct: 842 SDFTKAGMMTQAKELFKDM 860



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 127/307 (41%), Gaps = 40/307 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I  LC+   ++EA +   EME  ++ P++  ++S+I+G+ K G  ++A  +
Sbjct: 377 LNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEY 436

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
              MKE  ++P   TY  LI  + K++  D        M  +G   +    + L+     
Sbjct: 437 KRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQ 496

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G ++     +K      + L       ++D     G +    KF + L++ R  L + +
Sbjct: 497 NGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD-RNMLPDAV 555

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREME 375
           V  +                             + CL      C+L   +   S++ EM 
Sbjct: 556 VYNV----------------------------FINCL------CILGKFKEAKSILTEMR 581

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
           +  ++ + +T N +++++ +  +      LL E+    +KP+++T    Y+    G  GT
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLIT----YNTLVAGLFGT 637

Query: 436 GALEMWK 442
           GA+E  K
Sbjct: 638 GAVEKAK 644



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +G   +A++   EM+  ++KP+L  YN+++ G    G   +A   LNEM     SP S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T+  ++QA  + +  D I    + M   G   D   YN L+Q     G+ ++     + 
Sbjct: 660 LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEE 719

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           ML   +   + T  A++  +     LD     Y ++L
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQML 756



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 142/375 (37%), Gaps = 23/375 (6%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E   +N+F    ++  L + G +EEA+  F++  G  L      Y ++I G  K G    
Sbjct: 478 EGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPT 537

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           A  F  E+ + N+ P +  Y+  I        + E    L  M+  G  PD  TYN +I 
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIV 597

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
                G   +       M    +     T   ++      G ++K +     ++++    
Sbjct: 598 SHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGIDSVV 371
                R++ +   ++     + D+ + + +     ++     LL   C     R    V+
Sbjct: 658 SSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT----IGILYDA 427
            EM  + +  +  T N ++L + K     +     +++  +++ P+I T    +G L   
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKG------HFLR-YCEEVYSSLE 480
            RIG  GT  +EM K        +E N     + V G G        +R YCE V     
Sbjct: 778 GRIGEAGTVLIEMEK------SGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFV 831

Query: 481 PYSREKKRWTYQNLI 495
           P     K  TY  LI
Sbjct: 832 P-----KVSTYNALI 841



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 2/169 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  FN+  ++G L   G + EA     EME   L+P+   Y+ ++ G+ K     EA+  
Sbjct: 764 IATFNT--LLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRL 821

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EM      P+  TY+ LI  + K  M  +     K M+  G  P   TY++L+  ++ 
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                 ++   K M  K       T+  I  A+   GM  + ++  K L
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 139/352 (39%), Gaps = 51/352 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G ++ A  A  +  G      +  +N++I GY ++G    AL   + M    
Sbjct: 141 LLAGLCRNGQVDAAA-ALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQG 199

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L      Y+ L+  + +    D     L MMK  G  P+  TY   I  +     ++   
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAF 259

Query: 265 GTYKSMLTKRMHLRSSTMVAIL----------DAYMNFGMLDKMEKF-----YKRLLNS- 308
             Y+ M+   + L   T+ A++          +AY  F  +DK+        Y  L++S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSL 319

Query: 309 -RTPLKEDLVRKLAEVYIKNYMF------SRLDDLGDDLASRIGRTELVWCLRLLSHACL 361
            +    ++L+  L E+  +  +       + +D LG     + G+T+ V      + +  
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG-----KQGKTDEVKDTLRFALSDN 374

Query: 362 LSHRGI------------------DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
           LS  G+                  + V+ EME   +  NV T + ++  ++K        
Sbjct: 375 LSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGT-GALEMWKRIGFLFKTVEIN 454
                +  R + P++VT G L D     F G   ALE++  +  L + VE+N
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDG-FFKFQGQDAALEVYHDM--LCEGVEVN 483


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 38/308 (12%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I +LC+EG + +AVR  ++M    +     ++ +++ G+ + G    A  +
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM++  L+    TY  LI    +     E +  L+ M+  G   D +TY +LI  +  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +      +  M+ KR+     T  A+ D     G +    +    + +    L    
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN--- 494

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
                 ++  N + + L   G+          L   +R +          ID     M+ 
Sbjct: 495 ------IFTYNSLINGLCKAGN----------LEQAMRTM----------ID-----MDE 523

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           A ++ +V T   I+ A  + K+      LL E+  + +KP IVT  +L +    GF  +G
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMN----GFCMSG 579

Query: 437 ALEMWKRI 444
            +E  KR+
Sbjct: 580 RVEGGKRL 587



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G +  A     EM    L+ ++  YNS+I+G  K G   +A+  + +M E  L P 
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I A  + K  D     L+ M   G  P  +TYN+L+  F  +G ++  +   +
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            ML K +H  ++T  +++  Y     +    + YK +L+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +    IIG LC+   ++ A    QEM    +KP++  YN +++G+   G+       L  
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E N+ P + TY+ L++ Y   K         K M      P+  TYN+LI+    A  
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           +K     +  M+ K   L +S+  A++       +L+K +KF
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIR------LLNKKKKF 686



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F    +I  LC+ G +E+A+R   +M+   LKP +  Y +II    +  + + A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM +  + P   TY+ L+  +      +     L+ M      P+  TYN L++++  
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 257 AGLLKRMEGTYKSMLTKRM 275
              +K     YK ML++ +
Sbjct: 613 EKNMKSTTEIYKGMLSQEV 631



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           KNI  +    +NS  ++   C E  M+     ++ M    + P+   YN +I G+ K   
Sbjct: 594 KNIHPN-TTTYNS--LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EAL F +EM E      + +Y+ LI+   K K + E     + M+ +  + +   YN 
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNF 710

Query: 250 LI 251
            I
Sbjct: 711 YI 712


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R F++M+   + P +  YN+II+GY ++ K  EA  +  EMK  N+ P   TY
Sbjct: 164 GKVETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTY 223

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ Y      D+    ++ MK  G  P+ ITY+ L+     A  +       K M+ 
Sbjct: 224 TTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMD 283

Query: 273 KRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           K +    +S  + ++ +  N G LD      K ++    P +      L E + K   + 
Sbjct: 284 KYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYD 343

Query: 332 RLDDLGDDLASR 343
           +   L D L  +
Sbjct: 344 QAVKLLDKLIEK 355



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 73/152 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    +EG+++E+V+ FQ+ME   ++ +++ YN++     + G++  A  + N+M    
Sbjct: 86  MIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEG 145

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   T++ +I  +      +  +   + MK    SPD +TYN +I  +     ++  E
Sbjct: 146 IEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAE 205

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             +  M  + +     T   ++  Y++   +D
Sbjct: 206 KYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           S+++ +    F  W  +E+S + E N +   KII +L     +  A     ++    L+ 
Sbjct: 21  SAKTSEHALQFFRW--VERSNLFEHNRETHLKIIEILGRASKLNHARCILLDIPKKGLEW 78

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
             +++  +I  Y K G   E++    +M+E+ +     +Y+ L +   +   Y       
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M  +G  P   T+N++I  F  +G ++     ++ M ++ +     T   I++ Y   
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYYRV 198

Query: 293 GMLDKMEKFY 302
             +++ EK++
Sbjct: 199 KKMEEAEKYF 208


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + ++I+   ++ R  +  Q FD  +   K   N      +I  LC+   M+EA +  ++M
Sbjct: 352 YNSLIQGFCDARRLSEAMQYFDEMEG--KCAPNVITYSILIDGLCKVRRMKEAAKTLEDM 409

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +     P++  Y  +I+G+ K G+   ALLF  +MK    +P +  ++ LI    K +  
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERA 469

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           ++    L  M  +GC PD ITYN LI     A  ++  +  +  M
Sbjct: 470 NDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM 514



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 145/355 (40%), Gaps = 59/355 (16%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKII-GMLCEEGLMEEAVRAFQEMEGFALK 171
           +N S +R + Q  + +K ++ S +  +  S  I+   L + G M EA   F  M      
Sbjct: 150 ENKSANR-LEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM---TCS 205

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI-DM 230
           P +  YN ++ GY KIG+  EA   + E+ +    P   TY  +I  Y K    +E  ++
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV 265

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            +KM++   C P+ +T+N LI  F  AG+L+                         DA  
Sbjct: 266 FMKMIE-SNCVPNAVTFNTLIAGFCKAGMLE-------------------------DAIK 299

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
            F  ++K+    K  + +   L + L +K   VY    +F++L+  G    + +    L+
Sbjct: 300 LFAEMEKIG--CKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLT-PTIVTYNSLI 356

Query: 351 --WC-LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
             +C  R LS A             EME  K   NV T +I++    K++  K     L 
Sbjct: 357 QGFCDARRLSEA--------MQYFDEME-GKCAPNVITYSILIDGLCKVRRMKEAAKTLE 407

Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGAL-------EMWKRIGFLFKTVEINT 455
           ++      P +VT G L +    GF   G L       E  K  G    TV  NT
Sbjct: 408 DMKAHGYTPTVVTYGGLIN----GFCKCGELKSALLFFEKMKLAGCAPNTVIFNT 458



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 4/154 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE-GLMEEAVRAFQEMEG 167
           +  F K       I    +M K   K+ I  +N+  +I  LC++ G +  AV  F ++EG
Sbjct: 285 IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNT--LIDSLCKKRGGVYTAVDLFNKLEG 342

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P++  YNS+I G+    + +EA+ + +EM E   +P   TY  LI    K +   E
Sbjct: 343 AGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKE 401

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
               L+ MK  G +P  +TY  LI  F   G LK
Sbjct: 402 AAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELK 435



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 89/203 (43%), Gaps = 9/203 (4%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            ++   +  Q+ Q   ++ +++ S +  N      ++  LCE G M  A++ F+EM+   
Sbjct: 38  LIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGP 97

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYKMY 225
             P+   +N ++ G+   G+  +AL  L +M++ + S  + TY+    GL          
Sbjct: 98  FLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRL 157

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++     K MK  G  PD  +Y++L+   + +G +      + +M      +   T   +
Sbjct: 158 EQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIM---TYNVL 214

Query: 286 LDAYMNFGMLDKMEKFYKRLLNS 308
           +D Y   G   + +   K +L +
Sbjct: 215 MDGYCKIGQTYEAQSLMKEILKA 237



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 139/358 (38%), Gaps = 53/358 (14%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A+R F+E+      P+   YN +I G+ K G+ ++A+   ++MK   L P + T + L
Sbjct: 14  DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 73

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           +    +           + M+     P   ++N+L++ F  AG ++      + M     
Sbjct: 74  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSS 133

Query: 276 HLRSSTMVAILDAYM----NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
            + + T   +L        +   L++  +F+K +    + ++ DL     E Y  + + S
Sbjct: 134 SVATGTYNLVLKGLCWENKSANRLEQAMEFFKEM--KASGVEPDL-----ESY--HILLS 184

Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            L D G                R+     L S            +     ++ T N+++ 
Sbjct: 185 ALSDSG----------------RMAEAHALFS------------AMTCSPDIMTYNVLMD 216

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
            Y K+      + L+ E+     +P++ T  I+ +      D     E W+      K +
Sbjct: 217 GYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINC-YCKLDKVE--EAWE---VFMKMI 270

Query: 452 EINTDP------LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG 503
           E N  P       ++A + K   L    ++++ +E    +    TY  LID + K  G
Sbjct: 271 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRG 328


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           M  E G  +     FQEME   ++P+L +YN+++    K GK   A     EM E  + P
Sbjct: 303 MFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVP 362

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              T   +I+ YGK +   +     + MK +G   D I YN L+   A  GL++  E  +
Sbjct: 363 NEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLF 422

Query: 268 KSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRL 305
           + M  + +H +  S +  A+L+ Y + G +DK  K +  +
Sbjct: 423 RDM-KQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEM 461



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 61/136 (44%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           L ++AV  F+ M    L P    Y++I+  Y+++GK  E +      +     P   T+ 
Sbjct: 239 LYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFS 298

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L + +G+   YD I    + M+  G  P+ + YN L++    AG      G ++ M+  
Sbjct: 299 VLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIES 358

Query: 274 RMHLRSSTMVAILDAY 289
            +     T+ A++  Y
Sbjct: 359 GIVPNEKTLTAVIKIY 374



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 63/150 (42%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y++II    K   +++A+ +   M +  L P   TY  ++  Y +    +E+    +  +
Sbjct: 227 YSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGR 286

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             G  PD IT+++L + F  AG    +   ++ M +  +         +L+A    G   
Sbjct: 287 ATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPG 346

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
                ++ ++ S     E  +  + ++Y K
Sbjct: 347 FARGLFEEMIESGIVPNEKTLTAVIKIYGK 376


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 137/339 (40%), Gaps = 47/339 (13%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG++  EGL+E+    F++M    +K ++  + ++I+ Y + G++  +L  L  MK+  
Sbjct: 88  MIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQ 147

Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
           + P   TY+ ++ A  K  + ++ +      M+ +G  PD ITYN L+   +  GL+++ 
Sbjct: 148 VEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQA 207

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              +K+M    +   + T  +++D +     L ++E+  + + +   P        L E 
Sbjct: 208 AMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEA 267

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
           Y          D G+                           G   V ++M+      +V
Sbjct: 268 YA---------DAGN-------------------------VHGAAGVFKQMQRGGCAPDV 293

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
            T + +L  Y     F+ +R L S++      P + T   L     I   G G     + 
Sbjct: 294 ETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSL-----IQVFGEGGY-FQES 347

Query: 444 IGFLFKTVEINTDP------LVLAVYGKGHFLRYCEEVY 476
           I      V+    P       +L+V G+G   R   +++
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIH 386



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 3/203 (1%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAF 162
           + +  ++R   N     Q+  +F   K++     +  +NS  +I +  E G  +E++  F
Sbjct: 294 ETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNS--LIQVFGEGGYFQESINLF 351

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
            +M    +KP    Y++++    + G   EA      M     +P  +   GLI +YGK 
Sbjct: 352 HDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKM 411

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
            MY +  +    ++  G  P    Y+ LIQ +A  GL      T  +M         S++
Sbjct: 412 AMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSV 471

Query: 283 VAILDAYMNFGMLDKMEKFYKRL 305
            ++++AY   G+ D+  +F+  L
Sbjct: 472 NSVMEAYSKVGLHDEALEFFSEL 494



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EE +R   EME     P +  YNS+I  Y+  G  + A     +M+    +P  +TY
Sbjct: 240 GRVEELLR---EMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETY 296

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L++ YG    ++++      MK     P   TYN LIQ F   G  +     +  M+ 
Sbjct: 297 STLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVD 356

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
             +    +T  A+L      G+  +  K ++ +L N  TP
Sbjct: 357 SGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTP 396



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 7/190 (3%)

Query: 119 SRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S Q+ +V ++ + +E       I  +NS  +I    + G +  A   F++M+     P +
Sbjct: 236 SNQLGRVEELLREMEDEGNPPDIAGYNS--LIEAYADAGNVHGAAGVFKQMQRGGCAPDV 293

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
           E Y++++  Y   G F +     ++MK+++  P   TY+ LIQ +G+   + E       
Sbjct: 294 ETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHD 353

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M   G  PD  TY+ L+      GL +     ++ MLT            ++ +Y    M
Sbjct: 354 MVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAM 413

Query: 295 L-DKMEKFYK 303
             D +  +Y+
Sbjct: 414 YKDALVSYYR 423



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 136/350 (38%), Gaps = 35/350 (10%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
           G L  EGL+      F +M    ++P L  YN+++   S  G   +A +    M E  + 
Sbjct: 165 GGLDWEGLL----NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVV 220

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
             + TY  L+  +        ++  L+ M+ +G  PD   YN LI+ +A AG +    G 
Sbjct: 221 ADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGV 280

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +K M          T   +L  Y N G  +++   +  + +  TP        L +V+ +
Sbjct: 281 FKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGE 340

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW----N 382
              F    +L  D+     + +        +++ LLS  G   + R  E+AK+      N
Sbjct: 341 GGYFQESINLFHDMVDSGVKPDDA------TYSALLSVCGRGGLTR--EAAKIHQHMLTN 392

Query: 383 VTTANI-----ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG- 436
            +T ++     ++ +Y KM  +K   V    +    + P +      YDA   G+   G 
Sbjct: 393 ESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSA----YDALIQGYAKGGL 448

Query: 437 ------ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
                  L    + GF      +N+   V+  Y K        E +S L+
Sbjct: 449 YVEAGSTLYAMNKAGFQAPVSSVNS---VMEAYSKVGLHDEALEFFSELQ 495


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 1/174 (0%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           + FD  + I   R NE     +I     +GL+ EA R   EM      PS+  YN+ IHG
Sbjct: 171 EFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 229

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +  + +  EAL  + EM E  L+P   +Y  +I  + +    D      + M   G SPD
Sbjct: 230 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 289

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
            +TY+ LIQ       L       + ML   +     T   +++AY   G L+K
Sbjct: 290 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 343



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           +I + F + K++    +  N  +   II  LC EG M+EA    +EM      P    YN
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++++GY K G F++AL+   EM    +SP   TY  LI +  K +  +        M++ 
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR 179

Query: 239 GCSPDHITYNLLIQEFACAGLL 260
           G  P+  TY  LI  F+  GLL
Sbjct: 180 GLRPNERTYTTLIDGFSRQGLL 201



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 124/295 (42%), Gaps = 13/295 (4%)

Query: 134 KSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +SR+  N +    +I   C  G +++ +  F EME     P++  YN++I  Y K+G+ +
Sbjct: 3   RSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRID 62

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA   L  M    + P   +Y+ +I    +     E    L+ M   G +PD +TYN L+
Sbjct: 63  EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL------ 305
             +   G   +    +  M+   +     T  A++++      L++  +F+ ++      
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
            N RT     L+   +   + N  +  L+++ +   S    + + +   +  H  L    
Sbjct: 183 PNERT--YTTLIDGFSRQGLLNEAYRILNEMTE---SGFSPSVVTYNAFIHGHCVLERME 237

Query: 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               VV+EM    +  +V + + I+  + +  +      +  E+  + V PD VT
Sbjct: 238 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 292



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  +C+   +  A+  F +M    L+P+   Y ++I G+S+ G  NEA   LNEM E  
Sbjct: 156 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 215

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY+  I  +   +  +E    ++ M   G +PD ++Y+ +I  F   G L R  
Sbjct: 216 FSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAF 275

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ K +   + T  +++        L +     + +L+   P  E     L   Y
Sbjct: 276 QMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 17/231 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LCE   + EA    QEM    L P    Y ++I+ Y   G  N+AL   +EM    
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 355

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE----------- 253
             P + TY  LI    K     E    L  +  +   P  +TY+ LI+            
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 415

Query: 254 ----FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
               F   GL+   +  ++SM+ +      +    I+  +   G L K    YK +++S 
Sbjct: 416 LIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSG 475

Query: 310 TPLKEDLVRKLAEVYIKNYMFSRLDD-LGDDLAS-RIGRTELVWCLRLLSH 358
                  V  L +   K  M   + + +GD L S R+   EL   L  ++H
Sbjct: 476 FVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINH 526



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 132 IEKSRINEFNSQ-KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           IE     EF S   +I   C +GLM EA R F+ M     KP   +YN IIHG+ + G  
Sbjct: 402 IENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNL 461

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            +A     EM      P + T   LI+A  K  M +E+
Sbjct: 462 PKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 499


>gi|15220863|ref|NP_178203.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200729|sp|Q9SAH2.1|PP137_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80880, mitochondrial; Flags: Precursor
 gi|6503300|gb|AAF14676.1|AC011713_24 Contains PF|01535 Domain of unknown function [Arabidopsis thaliana]
 gi|91806121|gb|ABE65789.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332198342|gb|AEE36463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 540

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           EA R ++EM  + + P+ + Y+ +I  +SK+G   ++L   +EMK+  L+P  + Y+ L+
Sbjct: 277 EAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLV 336

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
               +   +DE    +K +  +G  PD +TYN +I+    AG L        +M+++ + 
Sbjct: 337 YVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLS 396

Query: 277 LRSSTMVAILDAYMNF 292
               T  A L+A +NF
Sbjct: 397 PTVDTFHAFLEA-VNF 411



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 56/108 (51%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G + +++R + EM+   L P +E+YNS+++  ++   F+EA+  + ++ E  
Sbjct: 300 MISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEG 359

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           L P S TY+ +I+   +    D     L  M  +  SP   T++  ++
Sbjct: 360 LKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLE 407



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 7/186 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I  +NS  ++ +L  E   +EA++  +++    LKP    YNS+I    + GK + A   
Sbjct: 329 IEVYNS--LVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNV 386

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M   NLSP  DT+   ++A    K  +     L  MK+    P   T+ L++ +   
Sbjct: 387 LATMISENLSPTVDTFHAFLEAVNFEKTLE----VLGQMKISDLGPTEETFLLILGKLFK 442

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
               +     +  M    +    +  +A +   ++ G L+K  + Y   + S+  +   +
Sbjct: 443 GKQPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSE-MKSKGFVGNPM 501

Query: 317 VRKLAE 322
           ++KL E
Sbjct: 502 LQKLLE 507


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 38/308 (12%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N      +I +LC+EG + +AVR  ++M    +     ++ +++ G+ + G    A  +
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM++  L+    TY  LI    +     E +  L+ M+  G   D +TY +LI  +  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +      +  M+ KR+     T  A+ D     G +    +    + +    L    
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN--- 494

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376
                 ++  N + + L   G+          L   +R +          ID     M+ 
Sbjct: 495 ------IFTYNSLINGLCKAGN----------LEQAMRTM----------ID-----MDE 523

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
           A ++ +V T   I+ A  + K+      LL E+  + +KP IVT  +L +    GF  +G
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMN----GFCMSG 579

Query: 437 ALEMWKRI 444
            +E  KR+
Sbjct: 580 RVEGGKRL 587



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G +  A     EM    L+ ++  YNS+I+G  K G   +A+  + +M E  L P 
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  +I A  + K  D     L+ M   G  P  +TYN+L+  F  +G ++  +   +
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            ML K +H  ++T  +++  Y     +    + YK +L+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +    IIG LC+   ++ A    QEM    +KP++  YN +++G+   G+       L  
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E N+ P + TY+ L++ Y   K         K M      P+  TYN+LI+    A  
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           +K     +  M+ K   L +S+  A++       +L+K +KF
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIR------LLNKKKKF 686



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N F    +I  LC+ G +E+A+R   +M+   LKP +  Y +II    +  + + A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM +  + P   TY+ L+  +      +     L+ M      P+  TYN L++++  
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 257 AGLLKRMEGTYKSMLTKRM 275
              +K     YK ML++ +
Sbjct: 613 EKNMKSTTEIYKGMLSQEV 631



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           KNI  +    +NS  ++   C E  M+     ++ M    + P+   YN +I G+ K   
Sbjct: 594 KNIHPN-TTTYNS--LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EAL F +EM E      + +Y+ LI+   K K + E     + M+ D  + +   YN 
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNF 710

Query: 250 LI 251
            I
Sbjct: 711 YI 712


>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 642

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-EMNLSPQSDTYD 213
           M++A   F EM    ++P+   + ++IHG++ +G    A   L +M  E NL+P ++ ++
Sbjct: 411 MDQAQEVFNEMVKQGVRPNATTFGALIHGHALMGDLETARSRLKQMSTEFNLAPAAEIHN 470

Query: 214 GLIQAYGKY-----KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            L+ A  +      + Y ++   +  MK +G  PDH T++++I     AGL    E  + 
Sbjct: 471 ILMDAEKRVATDPVEAYHQVLRAVDHMKQEGVRPDHATFSIVIDAAGFAGLPHEAEHQFH 530

Query: 269 SMLT-KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           +M +   +H  ++   ++++A    G LDK E     L
Sbjct: 531 AMTSLHGLHPNANNFTSLIEALARNGQLDKAEAVLDSL 568



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 23/308 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G  +EA R F  M    L P+L  ++++I+     G+ ++A    + M ++ 
Sbjct: 179 LITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINALGNAGRVDDAERCFDAMDQLG 238

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P +  +  LI A G      E +     M+  G  PD   ++ L+     AG +   +
Sbjct: 239 VVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLGVVPDLHCFSTLMSALTKAGKVDAAQ 298

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  + ++ +        A++  + + G  D+ E ++ ++  +   LK D +   A + 
Sbjct: 299 HVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAKITTTGR-LKPDRISYSALIQ 357

Query: 325 IKNYMFSRLD---DLGDDLASRIGRT--------ELVWCLRLLSHACLLSHRG------I 367
             N + +R D    L  ++  ++            +V    ++S  CL   RG       
Sbjct: 358 -ANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTVIS--CLAKARGRHHMDQA 414

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR-HVKPDIVTIGILYD 426
             V  EM    VR N TT   ++  +  M D +  R  L ++ T  ++ P      IL D
Sbjct: 415 QEVFNEMVKQGVRPNATTFGALIHGHALMGDLETARSRLKQMSTEFNLAPAAEIHNILMD 474

Query: 427 A-RRIGFD 433
           A +R+  D
Sbjct: 475 AEKRVATD 482


>gi|297828726|ref|XP_002882245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328085|gb|EFH58504.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1091

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            I+    + G ++EA    + ME   LKP +  Y  II GY+K G  NEA   L E K+ +
Sbjct: 928  IVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMNEAQEILAEAKKKH 987

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL-LKRM 263
                  TY  LI+ Y K + YDE    LK M   G  P+   YN LIQ F    L  ++ 
Sbjct: 988  KKLSPVTYHALIRGYCKIEEYDEALKLLKEMDRFGVQPNADEYNKLIQSFCLKALDWEKA 1047

Query: 264  EGTYKSMLTKRMHLRS 279
            E  ++ M  K +HL +
Sbjct: 1048 EVLFEEMKQKGLHLNA 1063



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 2/198 (1%)

Query: 109  VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE-EGLMEEAVRAFQEMEG 167
            +I +     ++ +   V+++ K  EKS +   +   +I  LC+ +G +  A     ++ G
Sbjct: 822  IISWFSKEGKAEEAYSVYELAKTKEKS-LPPRSVATLISALCKNDGTITFAQEMLGDLSG 880

Query: 168  FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             A +  ++ ++ +IH   ++    +A   L +M     +P +  ++ ++ A  K    DE
Sbjct: 881  EARRRGIKPFSDVIHSLCRMRNVKDAKSLLLDMISKGPAPGNAVFNLIVHACSKTGDLDE 940

Query: 228  IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                LK+M+  G  PD  TY ++I  +A  G++   +        K   L   T  A++ 
Sbjct: 941  AKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMNEAQEILAEAKKKHKKLSPVTYHALIR 1000

Query: 288  AYMNFGMLDKMEKFYKRL 305
             Y      D+  K  K +
Sbjct: 1001 GYCKIEEYDEALKLLKEM 1018



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 24/275 (8%)

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
           V+   E E  +   +LEI N +I  + K+GK   A    ++  E   +P + TY   ++A
Sbjct: 731 VKEIGEKESSSSVLNLEILNELIALFGKLGKSKAAFDVFSKTAEFGFTPNAKTYYLTLEA 790

Query: 219 YGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             K    D    +C +M+K  G  P+      +I  F+  G  +     Y+   TK   L
Sbjct: 791 LCKRSFMDWACSVCERMLK-SGVLPEGEQMGNIISWFSKEGKAEEAYSVYELAKTKEKSL 849

Query: 278 RSSTMVAILDAY-MNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDD 335
              ++  ++ A   N G +     F + +L   +   +   ++  ++V    +   R+ +
Sbjct: 850 PPRSVATLISALCKNDGTI----TFAQEMLGDLSGEARRRGIKPFSDVI---HSLCRMRN 902

Query: 336 LGD------DLASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTT 385
           + D      D+ S+ G         L+ HAC  S  G       V++ MES  ++ +V T
Sbjct: 903 VKDAKSLLLDMISK-GPAPGNAVFNLIVHAC--SKTGDLDEAKEVLKLMESRGLKPDVYT 959

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
             +I+  Y K       + +L+E   +H K   VT
Sbjct: 960 YTVIISGYAKGGMMNEAQEILAEAKKKHKKLSPVT 994


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 169/411 (41%), Gaps = 58/411 (14%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           F  +I  L NS    +   V+   K ++K  +++ F    +I      G ++ A+  F+E
Sbjct: 68  FTKLIDILVNSGEFERAELVYK--KLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFRE 125

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M+    +P    Y  +++   K G+  EA  F + M E  L+P   TY+ L+ A+ K   
Sbjct: 126 MKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKV-- 183

Query: 225 YDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
             ++DM L +   MK  G  P  +TYN+L+     AG +      +  M        S T
Sbjct: 184 -GQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT 242

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              +++     G +++  K ++ +++    +  DLV         N + + L        
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMVDRGVAV--DLVN-------YNSLLATL-------- 285

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
           ++ G  + VW L                 ++EM       +  + N I+ A  K      
Sbjct: 286 AKAGNMDRVWKL-----------------MKEMSRKGFHPDAFSFNTIMDALGKANKPDA 328

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDA-RRIGFDGTGALEMWKRI---GFLFKTVEINTDP 457
            R + + +     KPD+++  IL D+  R G D   A +M + +   GF+ +T   N+  
Sbjct: 329 AREVFARMVESGCKPDLISYNILIDSYARFG-DAAQARQMLEEMVEAGFIPETKTYNSLI 387

Query: 458 LVLAVYGKGHFLRYCEEVYSSLEPYSREKKR---WTYQNLIDLVIKHNGKN 505
             LA  G+       +E ++ LE       R    TY  L+D++ K  G+N
Sbjct: 388 HWLATDGQ------VDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR-GEN 431



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F+   I+  L +    + A   F  M     KP L  YN +I  Y++ G   +A   L
Sbjct: 309 DAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQML 368

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM E    P++ TY+ LI         DE    L+ M+  GC PD +TYN L+      
Sbjct: 369 EEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR 428

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +R    ++ M  K +   + +    +D       LD+    +K +     P+ + + 
Sbjct: 429 GENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMY 488

Query: 318 RKL 320
           R L
Sbjct: 489 RIL 491



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           +++++RQ+     + + +E   I E  +   +I  L  +G ++EA    +EME    +P 
Sbjct: 360 DAAQARQM-----LEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD 414

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           +  YN ++    K G+   A     +MK+  + P + +Y   I         DE  +  K
Sbjct: 415 VVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFK 474

Query: 234 MMKLDGCSPDHITYNLLIQEFACAG 258
            MK  GC  D   Y +LI+    AG
Sbjct: 475 DMKAVGCPVDKAMYRILIRAAHRAG 499



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 126/336 (37%), Gaps = 42/336 (12%)

Query: 148 MLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           +L   G+++      +EM  EG  L+P+  +   +I  Y +  K  +A    N+ +    
Sbjct: 4   VLASWGILDPLETLLKEMVAEGRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAESFAC 61

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           SP    +  LI        ++  ++  K +   GC  D   YN+LI+ F  +G L     
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP------LKEDLVR 318
            ++ M  K       T   +++A    G + +   F+  +L    TP      L  D  R
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181

Query: 319 KLAEVYIKNYMFSRLDDLG------------DDL--ASRIGRTELVWCLRLLSHAC---- 360
           K+ ++ +   +F+ +   G            D L  A R+G    ++  ++    C    
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFH-KMTGDGCSPDS 240

Query: 361 -----LLSHRGIDS-------VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
                L++  G          V REM    V  ++   N +L    K  +   +  L+ E
Sbjct: 241 YTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKE 300

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
           +  +   PD  +   + DA         A E++ R+
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM 336


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G + + +  F+++    L+P L  YN +IHG  K G+  EAL   N+M++  
Sbjct: 250 VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 309

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   TY+ LI   GK     E     + +   G  P+  TYN LI+ ++ +G  +   
Sbjct: 310 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 369

Query: 265 GTYKSMLTKRMHLRSST 281
             Y  M+       SST
Sbjct: 370 AAYGRMIVGGCRPNSST 386



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 38/302 (12%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    I+  + +   +E+ ++  +EM     K +   YN+II G  K    +EA+   
Sbjct: 103 DEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLY 162

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            ++     SP   TY  L+    K    ++ +     M   GC P+   YN+L+  +  A
Sbjct: 163 YQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA 222

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G  +++   ++SM+ + M+    +   ++D     G L+    ++K+L  +   L+ DL+
Sbjct: 223 GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQL--TDMGLEPDLI 280

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
                    N +   L         + GR E                    S+  +ME  
Sbjct: 281 -------TYNLLIHGL--------GKSGRLEEAL-----------------SLYNDMEKK 308

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
            +  N+ T N ++L   K         +  EL  +  KP++ T    Y+A   G+  +G+
Sbjct: 309 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFT----YNALIRGYSVSGS 364

Query: 438 LE 439
            E
Sbjct: 365 PE 366



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+    F+ M    + P ++ Y  +I      G+ N+ L +  ++ +M L P   TY
Sbjct: 223 GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 282

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI   GK    +E       M+  G +P+  TYN LI     AG        Y+ +L 
Sbjct: 283 NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 342

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           K       T  A++  Y   G  +     Y R++
Sbjct: 343 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMI 376



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
            +S ++ +   ++ ++EK  I  N +    +I  L + G   EA + ++E+     KP++
Sbjct: 290 GKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNV 349

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             YN++I GYS  G    A      M      P S TY
Sbjct: 350 FTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 387



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           E V+ F+ + G +LK     YN++I G       + A    +EMK +   P   TY  ++
Sbjct: 55  ELVKKFENL-GVSLKTG--SYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 111

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A GK    +++    + M   G    ++TYN +I     + +L      Y  ++++   
Sbjct: 112 DAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFS 171

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
               T   +LD  +  G ++  E  +  +L
Sbjct: 172 PTPCTYGPLLDGLLKDGNIEDAEALFDEML 201


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 2/194 (1%)

Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           R +    D++  +E    R N      +I  LC  G   +A R    M    + P++  +
Sbjct: 272 RHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTF 331

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           N++I  + K GK  EA     EM + ++ P + TY+ LI  +  +   DE     K M  
Sbjct: 332 NALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS 391

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             C P+  TYN LI  F     ++     ++ M  + +   + T   I+  +   G  D 
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDS 451

Query: 298 MEKFYKRLLNSRTP 311
            +  +K+++++R P
Sbjct: 452 AQMVFKQMVSNRVP 465



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 122 IPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
           I    ++   +E +RI      FN+  II  LC+   +E AV  F EME   ++P++  Y
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNT--IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296

Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
           NS+I+     G++++A   L+ M E  ++P   T++ LI A+ K     E +   + M  
Sbjct: 297 NSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ 356

Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
               PD ITYNLLI  F     L   +  +K M++K
Sbjct: 357 RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 9/274 (3%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
            EAV    +M     +P L  Y ++++G  K G  + AL  LN+M+   +      ++ +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I +  KY+  +        M+  G  P+ +TYN LI      G          +ML K++
Sbjct: 265 IDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI 324

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-MFSRLD 334
           +    T  A++DA+   G L + EK ++ ++  +  +  D +     + I  + M +RLD
Sbjct: 325 NPNVVTFNALIDAFFKEGKLVEAEKLHEEMI--QRSIDPDTIT--YNLLINGFCMHNRLD 380

Query: 335 DLGDDLASRIGRTEL--VWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTANIIL 390
           +        + +  L  +     L +      R  D V   REM    +  N  T   I+
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             + +  D    +++  ++ +  V  DI+T  IL
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSIL 474



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 30/318 (9%)

Query: 128 MWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           +  N+ + +IN     FN+  +I    +EG + EA +  +EM   ++ P    YN +I+G
Sbjct: 315 LLSNMLEKKINPNVVTFNA--LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           +    + +EA      M   +  P   TY+ LI  + K K  ++     + M   G   +
Sbjct: 373 FCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            +TY  +IQ F  AG     +  +K M++ R+     T   +L    ++G LD     +K
Sbjct: 433 TVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG------DDLASRIGRTELVWCLRLLS 357
            L  S   L          ++I N M   +   G      D   S   + ++V    ++S
Sbjct: 493 YLQKSEMELN---------IFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMIS 543

Query: 358 HAC---LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
             C   LL     D + R+M+      N  T N ++ A L+  D      L+ E+ +   
Sbjct: 544 GLCSKRLLQEA--DDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGF 601

Query: 415 KPDIVTIGI----LYDAR 428
             D  TI +    L+D R
Sbjct: 602 VGDASTISLVTNMLHDGR 619



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 40/285 (14%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C    +  A+    +M     +P +   +S+++GY    + ++A+  +++M EM  
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P + T+  LI     +    E    +  M   GC PD +TY  ++      GL KR + 
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN-----GLCKRGD- 238

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
                               +D  +N  +L+KME        +R      +   + +   
Sbjct: 239 --------------------IDLALN--LLNKMEA-------ARIKANVVIFNTIIDSLC 269

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS--VVREMESAKVRWN 382
           K        DL  ++ ++  R  +V    L++  CL ++ R  D+  ++  M   K+  N
Sbjct: 270 KYRHVEVAVDLFTEMETKGIRPNVVTYNSLIN--CLCNYGRWSDASRLLSNMLEKKINPN 327

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           V T N ++ A+ K         L  E+  R + PD +T  +L + 
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372


>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           I+   C++G  + A+   + M  +G    PS+  YN +IHG+ K G+ ++A    + M +
Sbjct: 174 ILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQ 233

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P   TY+ +I A  K +  D+ ++ L+ M  +   PD +TYN LI  +   G LK 
Sbjct: 234 QGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKE 293

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK-FYKRLLNSRTP 311
                K M ++ +     T  +++D     G + + E+ FY R +N R P
Sbjct: 294 TFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKP 343



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 48/287 (16%)

Query: 85  NKKVSCPLQILQHDGDWTKDHFWAVIR-------FLKNSSRSRQIPQVFDMWKNIEKSRI 137
           + +  C L +L+   +   +H  +V+        F K    S+       M +      +
Sbjct: 181 DGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDV 240

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
             +NS  +I  LC+   M++A    + M   +++P    YNS+IHGY  +G+  E    L
Sbjct: 241 VTYNS--VINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLL 298

Query: 198 NEMKEMNLSPQSDTYDGLIQ---AYGKYKMYDE--------------------------- 227
             M+   + P   T   ++     +GK K  +E                           
Sbjct: 299 KVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIE 358

Query: 228 ------IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                 ID+C ++M  DG  PD   +N+LI  +A  G++      ++ ML + +     T
Sbjct: 359 GSLVKMIDLC-EVMARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFT 417

Query: 282 MVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            + ++ A+   G M D MEKF   +++   PL  ++   + E Y+ +
Sbjct: 418 YLTVISAFCKMGRMDDAMEKF-SEMIDMGVPLDTEVYMCMVEGYLNH 463



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 2/189 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+ + F + K +    +  +      ++  LC+ G ++EA   F        KP + +Y+
Sbjct: 290 QLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYS 349

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            ++HGY+  G   + +     M    + P    ++ LI AY KY M D   +  + M   
Sbjct: 350 IMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQ 409

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G  P+  TY  +I  F   G +      +  M+   + L +   + +++ Y+N G   K 
Sbjct: 410 GVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEGYLNHGDSMKA 469

Query: 299 EKFYKRLLN 307
           E+F  ++ N
Sbjct: 470 EEFITKMKN 478



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           DM K  +  + NEF    +I   C+ G M++A+  F EM    +    E+Y  ++ GY  
Sbjct: 405 DMLK--QGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEGYLN 462

Query: 187 IGKFNEALLFLNEMKEMNL 205
            G   +A  F+ +MK M++
Sbjct: 463 HGDSMKAEEFITKMKNMDI 481


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M  A +   +M  F + P++ +YN +I GY K G  +EAL   +E+++  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI+        +E D  L+ MK  G  P+ +TYN LI  +   G +++  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                M  K +     T   ++D Y   G ++     Y  ++
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMV 465



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEE 157
           DG    D   +  +FL + +    +P +F             +N   +I   C+ G + E
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIF------------VYNC--LIDGYCKAGNLSE 351

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+    E+E   + P +  Y+ +I G   + +  EA   L EMK+    P + TY+ LI 
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 218 AYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            Y K   M   I++C +M +  G  P+ IT++ LI  +  AG ++   G Y  M+ K + 
Sbjct: 412 GYCKEGNMEKAIEVCSQMTE-KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                  A++D +   G   +  + +K +
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEM 499



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 156/404 (38%), Gaps = 59/404 (14%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV--------- 159
           +I+ L+ S RSR    VF++   +E S+        +I    E GL+EEA+         
Sbjct: 96  LIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVL 155

Query: 160 -----------------------RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
                                  + + +M      P++  Y ++I G  + G F +A   
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            +EM E  + P    Y  LI+         E +   + M+  G  P+  TYN ++  +  
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
              +K+    Y  ML   +     T   ++D        D+M    K L++  +      
Sbjct: 276 IAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCK---TDEMVSARKFLIDMAS------ 326

Query: 317 VRKLAEVYIKNYM---FSRLDDLGDDLA--SRIGRTEL---VWCLRLLSHACLLSHR--G 366
              +  +++ N +   + +  +L + L+  S I + E+   V+   +L        R   
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            D +++EM+      N  T N ++  Y K  + +    + S++  + ++P+I+T   L D
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHF 468
               G+   G +E    +G   + V     P V+A      GHF
Sbjct: 447 ----GYCKAGKME--AAMGLYTEMVIKGLLPDVVAYTALIDGHF 484



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 16/173 (9%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K IE + I  F++  +I   C+ G ME A+  + EM    L P +  Y ++I G+ K G 
Sbjct: 432 KGIEPNIIT-FST--LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDG--------- 239
             EA     EM+E  L P   T   LI    K  ++ D I + L     D          
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELD 548

Query: 240 ---CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              CSP+H+ Y  LIQ     G + +    +  M    +     T + I+  +
Sbjct: 549 RSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C+EG ME+A+    +M    ++P++  ++++I GY K GK   A+   
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            EM    L P    Y  LI  + K     E     K M+  G  P+  T + LI
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515


>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 788

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           +S  N +    +I    + G +E+    F +M    + PS+  +NS+IH + K  +  + 
Sbjct: 243 RSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKV 302

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
              +  M+E    P + TY+ LI  Y +    D  +     MK +   PD ++   L+  
Sbjct: 303 ASLVRMMEEFQCFPDTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYG 362

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL---LNSR- 309
           ++  G++ + E   K M  +   +   T  A+   Y+N GML++  +++ R    +NS  
Sbjct: 363 YSIRGMVTKAEALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDRFHHHMNSEC 422

Query: 310 ----------------------TPLKEDLVRKLA-EVYIKNYMFSRLDDLGDDLASRIGR 346
                                   LK+ ++   A  V IK Y    + D   ++A+ + R
Sbjct: 423 FSANIDAFGEKGYIVLAEKAFVCCLKKKMISVSACNVMIKAYGLVGMLDEACEIANGMER 482

Query: 347 TELV-------WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            +++         ++LLS A  L  + I   + +M+  K+  +    ++++ ++ K  D 
Sbjct: 483 YDILPDYVTYTSLIQLLSTA-KLPKKAI-YYLEKMKVVKLLSDCIPYSVVISSFAKNGDL 540

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +    L  E+    V+PDI    IL DA
Sbjct: 541 RMSEYLFREMIMSGVRPDIFVYSILIDA 568



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            LK     R+  ++FD ++  +   +N  +   ++  + +    +  +R + EM  F + 
Sbjct: 109 ILKEQKDWRRAVEIFDWFRREQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGVA 168

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y ++I+   + G+   ALL+L +M +  L P   T   ++QA+ K   Y+  ++ 
Sbjct: 169 PDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEIF 228

Query: 232 LK------MMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +      + +++G S  ++ TYN LI  +  AG L+++  T+  ML++ +     T  +
Sbjct: 229 FERWSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNS 288

Query: 285 ILDAYMNFGMLDKMEK 300
           ++ A+   G   +MEK
Sbjct: 289 MIHAW---GKHHRMEK 301



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           S+   N +I  Y  +G  +EA    N M+  ++ P   TY  LIQ     K+  +    L
Sbjct: 453 SVSACNVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYL 512

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + MK+     D I Y+++I  FA  G L+  E  ++ M+   +         ++DAY   
Sbjct: 513 EKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEV 572

Query: 293 GMLDKMEKFY 302
           G + +   ++
Sbjct: 573 GNVQQASAYF 582



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 65/153 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+++EA      ME + + P    Y S+I   S      +A+ +L +MK + L      Y
Sbjct: 468 GMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPY 527

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I ++ K       +   + M + G  PD   Y++LI  +A  G +++    +  M  
Sbjct: 528 SVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKK 587

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++   +   +++  Y   G + +    YK L
Sbjct: 588 DGLYENVTIYNSLIKLYTKVGYVPEARGAYKLL 620



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           ++  +VFD  K   +   NEF+   ++ M  + G  + A R  +EM+   L   L  YNS
Sbjct: 646 KEACEVFDSLK--VRGIANEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNS 703

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +I  Y   G+  EAL    +M   N  P   T+  L
Sbjct: 704 VIQMYVSGGRTEEALKIFKKMLASNTPPNDATFQAL 739



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 51/124 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L    L ++A+   ++M+   L      Y+ +I  ++K G    +     EM    
Sbjct: 495 LIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSG 554

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y  LI AY +     +      +MK DG   +   YN LI+ +   G +    
Sbjct: 555 VRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYTKVGYVPEAR 614

Query: 265 GTYK 268
           G YK
Sbjct: 615 GAYK 618



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R + F    +I    E G +++A   F  M+   L  ++ IYNS+I  Y+K+G   EA  
Sbjct: 556 RPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYTKVGYVPEARG 615

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               +K ++ +      + +I  Y  + M  E       +K+ G + +  ++ +++  + 
Sbjct: 616 AYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIA-NEFSHAMMVCMYK 674

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G         K M    +  +  +  +++  Y++ G  ++  K +K++L S TP  + 
Sbjct: 675 KVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIFKKMLASNTPPNDA 734

Query: 316 LVRKLAEVYIKN 327
             + L  + +++
Sbjct: 735 TFQALKVILVRS 746


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC EG + EA     +M G  L   +  Y +I++G  K+G    AL  L++
Sbjct: 229 FNT--LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E ++ P    Y  +I    K   + +       M   G +P+  TYN +I  F   G 
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +   + M+ + ++    T  A++ A +  G L + EK    +L+            
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMES 376
           +   + K+  F     + D +AS     ++V    ++   C    + +D    ++RE+  
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYC--RAKRVDEGMQLLREISR 460

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N TT N ++  + ++ +    + L  E+ +  V PD +T  IL            
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
           ALE+++ I      ++++T    + ++G  KG  +    +++ SL  +  E    TY  +
Sbjct: 521 ALELFEVIQ--MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578

Query: 495 I 495
           I
Sbjct: 579 I 579



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G   +A R  ++M    + P +  +N++I    K GK  EA    
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P + TY+ +I  + K+  +D+      +M     SPD +T+N +I  +  A
Sbjct: 390 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRA 445

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              KR++        + M L                    + +  +R L + T     L+
Sbjct: 446 ---KRVD--------EGMQL--------------------LREISRRGLVANTTTYNTLI 474

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES- 376
               EV   N       DL  ++ S     + + C  LL   C   +  ++  +   E  
Sbjct: 475 HGFCEVDNLN----AAQDLFQEMISHGVCPDTITCNILLYGFC--ENEKLEEALELFEVI 528

Query: 377 --AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
             +K+  +    NII+    K         L   LP   V+PD+ T    Y+    GF G
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT----YNVMISGFCG 584

Query: 435 TGAL 438
             A+
Sbjct: 585 KSAI 588



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            CE   +EEA+  F+ ++   +      YN IIHG  K  K +EA      +    + P 
Sbjct: 512 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             TY+ +I  +       + ++    MK +G  PD+ TYN LI+    AG + +
Sbjct: 572 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 59/309 (19%)

Query: 123 PQV-FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           P V   +++ +E  RI  N ++   +I   C+   +  ++  F ++     +P +  +N+
Sbjct: 122 PDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNT 181

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           ++HG     + +EAL     M E           G ++A   +    EI          G
Sbjct: 182 LLHGLCLEDRISEALALFGYMVET----------GFLEAVALFDQMVEI----------G 221

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            +P  IT+N LI      G +         M+ K +H+   T   I++     G      
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMG------ 275

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
                  ++++ L  +L+ K+ E +IK                     ++V    ++   
Sbjct: 276 -------DTKSAL--NLLSKMEETHIK--------------------PDVVIYSAIIDRL 306

Query: 360 CLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           C   H      +  EM    +  NV T N ++  +     +   + LL ++  R + PD+
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366

Query: 419 VTIGILYDA 427
           +T   L  A
Sbjct: 367 LTFNALISA 375



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 118 RSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            + ++ +  ++++ I+ S+I+        II  +C+   ++EA   F  +    ++P ++
Sbjct: 514 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 573

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+      ++A +  ++MK+    P + TY+ LI+   K    D+    +  M
Sbjct: 574 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +G S D  T   ++ +    G   R++ ++  ML+
Sbjct: 634 RSNGFSGDAFTIK-MVADLITDG---RLDKSFSDMLS 666



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 2/182 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R++++ +   + + I +  +  N      +I   CE   +  A   FQEM    + P   
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 503

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N +++G+ +  K  EAL     ++   +   +  Y+ +I    K    DE       +
Sbjct: 504 TCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSL 563

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            + G  PD  TYN++I  F     +      +  M        +ST   ++   +  G +
Sbjct: 564 PIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEI 623

Query: 296 DK 297
           DK
Sbjct: 624 DK 625


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+E  ++ A  AFQ ++G  + P    +N+++HG+ K     EA   + EM+   
Sbjct: 273 LLDTLCKERSVKRARGAFQALKG-TIPPDESSFNTLVHGWCKARMLKEARETMKEMERHG 331

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            SP   TY  LI+AY   K +  +D  L  M   GC+P+ ITY +++     AG  +   
Sbjct: 332 FSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEAL 391

Query: 265 GTY 267
            T+
Sbjct: 392 DTF 394



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (42%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+  +++EA    +EME     PS+  Y  +I  Y     F      L+EM     +P  
Sbjct: 312 CKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNI 371

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
            TY  ++ A GK     E       +K DGC+ D   YN LI     AG L+
Sbjct: 372 ITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQ 423



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 14/239 (5%)

Query: 65  TLLVESY---HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
           T L+E+Y    + Q ++ ++  ++ K   P  I           +  V+  L  + R+++
Sbjct: 340 TCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIIT----------YTIVMHALGKAGRTQE 389

Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
               FD  K  +   ++      +I +LC  G +++A    +EM    + P+L  +N++I
Sbjct: 390 ALDTFDKVKQ-DGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLI 448

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
                      AL  L +M+E + +P   TY  L++   + K    +   +  M     +
Sbjct: 449 SAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDIT 508

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
           PD  TY LL+      G L +     + M+ K    + +T   +L+   N  ML  + K
Sbjct: 509 PDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLKNMHMLSAVRK 567



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 113/290 (38%), Gaps = 18/290 (6%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++  LC      +A+ AF +M+ F +    +  N ++    K      A      +K  
Sbjct: 237 KVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKG- 295

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P   +++ L+  + K +M  E    +K M+  G SP   TY  LI+ +      + +
Sbjct: 296 TIPPDESSFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTV 355

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
           +G    M TK       T   ++ A    G         +  L++   +K+D     A  
Sbjct: 356 DGILDEMHTKGCTPNIITYTIVMHALGKAGRT-------QEALDTFDKVKQDGCALDASF 408

Query: 324 Y-IKNYMFSRLDDLGDD--LASRIGRTELVWCL----RLLSHAC--LLSHRGIDSVVREM 374
           Y    Y+  R   L D   +   + RT +   L     L+S AC   L+   +  +V +M
Sbjct: 409 YNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLV-QM 467

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           E      ++ T   +L    + K  K L  L+  +  + + PD  T  +L
Sbjct: 468 EEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLL 517


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 2/187 (1%)

Query: 124 QVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F+M++++EK+   ++    + +I  L + G ++ A + FQEM+    +P L ++ S++
Sbjct: 212 KAFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLV 271

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               K G+ + A+    EM+     P    Y  LI++Y K    +        M++ G  
Sbjct: 272 DSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFR 331

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+   Y L+I+  A +G L+    T+  M         ST   +L+ +   G +D   K 
Sbjct: 332 PNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKL 391

Query: 302 YKRLLNS 308
           Y  + N+
Sbjct: 392 YNSMTNA 398



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 113 LKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           + N ++S ++   F +++ ++    +  +N F S  ++  + + G ++ A++ + EM G+
Sbjct: 236 IPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFAS--LVDSMGKAGRLDSAMKVYMEMRGY 293

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             KP   IY S+I  Y K GK   AL   +EM+     P    Y  +I+++ K     EI
Sbjct: 294 GYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKL-EI 352

Query: 229 DMCLKM-MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
            M   + M+  G  P   TY  L++  A +G +      Y SM    +    ST   +L 
Sbjct: 353 AMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLT 412

Query: 288 AYMNFGMLDKMEK 300
              N  ++D   K
Sbjct: 413 LLANKKLVDVAAK 425



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 45/107 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II    + G +E A+  F +ME     P+   Y  ++  ++  G+ + A+   N M    
Sbjct: 340 IIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAG 399

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L P   TY  L+      K+ D     L  MK  G S D    ++L+
Sbjct: 400 LRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVDVTASDILM 446


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           + F++++++EK  S ++    + II  L + G ++ A + FQ+M+   L+PS  +++S++
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               K G+ + ++    EM+     P +  +  LI +Y K    D        MK  G  
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+   Y ++I+  A +G L+     +K M         ST   +L+ +   G +D   K 
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475

Query: 302 YKRLLNS 308
           Y  + N+
Sbjct: 476 YNSMTNA 482



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           ++S ++   F +++ +++ ++    S    ++  + + G ++ +++ + EM+GF  +PS 
Sbjct: 324 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 383

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            ++ S+I  Y+K GK + AL   +EMK+    P    Y  +I+++ K    +      K 
Sbjct: 384 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKD 443

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M+  G  P   TY+ L++  A +G +      Y SM    +    S+ +++L    N  +
Sbjct: 444 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRL 503

Query: 295 LD 296
           +D
Sbjct: 504 VD 505



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 38/251 (15%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +  + + +++ ++     +W  ++KS  R N      II    + G +E A+  F++ME 
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEK 446

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P+   Y+ ++  ++  G+ + A+   N M    L P   +Y  L+      ++ D 
Sbjct: 447 AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDV 506

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
               L  MK  G S D    ++L                               M+ I D
Sbjct: 507 AGKILLEMKAMGYSVDVCASDVL-------------------------------MIYIKD 535

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           A ++  +     K+ + + +S       ++R+L E  +KN ++     L + L    G+ 
Sbjct: 536 ASVDLAL-----KWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKV 590

Query: 348 ELVWCLRLLSH 358
           +LV    +L+H
Sbjct: 591 DLVLYTSILAH 601


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R  Q+ Q F +W+ +    +  N F    +I  LC+E  + +A     ++    + P   
Sbjct: 359 RVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPF 418

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLKM 234
           +YN +I G+ K GK NEA++ + EM++    P   T+  LI  +  K +M++ + +  KM
Sbjct: 419 MYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKM 478

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKR 262
           + + GCSPD IT + L+     AG+ K 
Sbjct: 479 VAI-GCSPDKITVSSLLSCLLKAGMAKE 505



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G  E+AV     M GF   P +  YN++I G+ K  +  +A    +++K  +
Sbjct: 212 LIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSS 271

Query: 205 -LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
             SP   TY  +I  Y K     E  + L  M   G  P ++T+N+L+  +A AG +   
Sbjct: 272 GCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTA 331

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
           E     M++        T  +++D Y   G +++  + ++  +N+R
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEE-MNAR 376



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 22/312 (7%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +E+A++ F+E   F      + +N +I G   +GK  +A+  L  M      P   TY+ 
Sbjct: 187 VEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNT 246

Query: 215 LIQAYGKY-------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
           LI+ + K        +M+D++          GCSPD +TY  +I  +  AG ++      
Sbjct: 247 LIKGFCKSNELKKANEMFDDVK------SSSGCSPDVVTYTSMISGYCKAGKMQEASVLL 300

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             ML   ++  + T   ++D Y   G +   E+   ++++            L + Y + 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTT 385
              ++   L +++ +R G     +   +L +A    +R + +  ++ ++ S  +      
Sbjct: 361 GQVNQGFRLWEEMNAR-GMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFM 419

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG 445
            N ++  + K        V++ E+  +  KPD +T  IL     IG    G   M++ + 
Sbjct: 420 YNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI----IGHCMKG--RMFEAVS 473

Query: 446 FLFKTVEINTDP 457
              K V I   P
Sbjct: 474 IFHKMVAIGCSP 485



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C  G + +  R ++EM    + P+   Y+ +I+   K  +  +A   L ++   +
Sbjct: 353 LIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKD 412

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + PQ   Y+ +I  + K    +E  + ++ M+   C PD IT+ +LI      G +    
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM----EKFYKRLLNSRTPLK 313
             +  M+         T+ ++L   +  GM  +     +  +K  +N   PL+
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGAPLE 525



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 62/144 (43%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+    S+  ++  ++FD  K+      +      +I   C+ G M+EA     +M   
Sbjct: 247 LIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRL 306

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            + P+   +N ++ GY+K G+ + A     +M      P   T+  LI  Y +    ++ 
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQG 366

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQ 252
               + M   G  P+  TY++LI 
Sbjct: 367 FRLWEEMNARGMFPNAFTYSILIN 390


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 122/292 (41%), Gaps = 2/292 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE++   +I  LCE   + EA+  F  M+     P++  +  +I G  K G+  +A L  
Sbjct: 252 NEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF 311

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M +  + P   TY+ +I  Y K    ++     ++M+ +GC PD  TYN LI    C 
Sbjct: 312 DAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL-CD 370

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              +  E    + + +       T   +++ Y      D   +   ++++S+  L   + 
Sbjct: 371 QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVF 430

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMES 376
            KL    IK        +L +++++      ++    ++   C      I   V++ ME 
Sbjct: 431 GKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMER 490

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
              + N  T N ++   +K K       LL+++    + P+++T   L   +
Sbjct: 491 DGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 542



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 6/292 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II   C+ G ++ A+   + ME    +P+   YNS+++G  K  K ++A+  L
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M++  + P   TY  L+Q       +D      +MM+ +G  PD   Y +L      A
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G   R E  Y  ++ K + L       ++D +   G  D      +R+++          
Sbjct: 581 G---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREME 375
             L     K    +    + D ++ R G    ++   +L    L    H     +  EM 
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLR-GIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S+  + + TT  + + +Y K    +    L+ ++    V PD+VT  IL D 
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E    + +    ++  LC++  + EA+    +M    +K ++  Y  +I    + GK + 
Sbjct: 628 EGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDH 687

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           A    NEM      P + TY   I +Y K  ++ D  D+ LKM + +G +PD +TYN+LI
Sbjct: 688 AKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER-EGVAPDVVTYNILI 746

Query: 252 QEFACAGLLKRMEGTYKSML 271
                 G + R   T K M+
Sbjct: 747 DGCGHMGYIDRAFSTLKRMV 766



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 6/286 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG +  A R F+ +    L+P     N+++ GY + G+  +A      M  M 
Sbjct: 189 MIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMG 248

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 +Y  LIQ   + K   E  +   MMK DGCSP+   +  LI     +G +    
Sbjct: 249 CQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M    +     T  A++  Y   G ++   K  K L+       +D         
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI-KELMEKNGCHPDDWTYNTLIYG 367

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRW 381
           + +      ++L ++         +V    L++  C+      D  +R   +M S+K + 
Sbjct: 368 LCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK--FDDALRMKNKMMSSKCKL 425

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++     ++ + +K    K  + LL+E+    + P+++T   + D 
Sbjct: 426 DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  +  EG  + A R + EM     KPS   Y   I+ Y K G+  +A   + +
Sbjct: 670 FAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILK 729

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           M+   ++P   TY+ LI   G     D     LK M    C P++ TY LL++
Sbjct: 730 MEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLK 782



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            + M    L P++  Y+S+I G+ K G+  EA L L+ M    LSP  D Y  LI+    
Sbjct: 813 LERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 872

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
            K +++    + +M   G  P   +Y LL+      G  ++++  +  +L
Sbjct: 873 TKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLL 922



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +EEA      M G  L P+ +IY  +I        F +AL F++ M E  
Sbjct: 831 LIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECG 890

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG------ 258
             PQ ++Y  L+        ++++      +   G + D + + +L      AG      
Sbjct: 891 FQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICF 950

Query: 259 -LLKRMEGTY-------KSMLTKRMHLRSSTMVA 284
            +L  ME  Y        +++T +MH  SS++V+
Sbjct: 951 QMLSIMEKRYCCISSQTYALVTNKMHEVSSSLVS 984



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 40/93 (43%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R + ++    L P    YN++I  Y K G    A      + E  L P++ T + L+  Y
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGY 228

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            +     +      MM L GC  +  +Y +LIQ
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQ 261


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C EG + EA     +++    +P + +YN+++ GY++ GK  +A   L EMK++N  P +
Sbjct: 257 CREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNA 316

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            ++  LIQ++ K +  DE       M+  GC  D +TY  LI  F
Sbjct: 317 ASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGF 361



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    ++  LC+ G ++EA   F++M      P+L  + S+++G+ + GK  EA   L
Sbjct: 211 DEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLYGWCREGKIMEAKHVL 269

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++KE    P    Y+ L+  Y +  KM D  D+  +M K++ C P+  ++ +LIQ F  
Sbjct: 270 VQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN-CGPNAASFTILIQSFCK 328

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              +      +  M          T   ++  +  +G  DK
Sbjct: 329 TEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 369



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 93/198 (46%), Gaps = 2/198 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   +++ ++   FD+   ++K     N  +   +I   C+   M+EA+R F EM+G  
Sbjct: 287 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 346

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +  +  Y ++I G+ K G  ++A   L++M +    P   +Y  ++ A+ K +  +E  
Sbjct: 347 CEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECM 406

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             ++ M+  GC PD   YN +I+     G LK     +  M    ++    T + ++  +
Sbjct: 407 ELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGF 466

Query: 290 MNFGMLDKMEKFYKRLLN 307
           ++ G L +   ++K ++ 
Sbjct: 467 LSQGCLVEACDYFKEMVE 484



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +N+  +I ++C+ G ++EAVR + EM+   L P L+ Y  ++HG+   G   EA  +
Sbjct: 421 LNIYNT--MIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDY 478

Query: 197 LNEMKEMNL--SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             EM E  L  +PQ  T   L  A  + +  +        M   GC  +   + + I   
Sbjct: 479 FKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHAL 538

Query: 255 ACAGLLK 261
              G +K
Sbjct: 539 FSNGHVK 545


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 122  IPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
            + +V+D+   +E   I         +I  L + GL+E A   F EM    L P +  YNS
Sbjct: 1206 VKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNS 1265

Query: 180  IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +++GY K G   EALL   +++   L+P   TY+ LI  Y +    +E  +  + M   G
Sbjct: 1266 LLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQG 1325

Query: 240  CSPDHITYNLLIQ 252
            C P+  TY +L++
Sbjct: 1326 CLPNVCTYTILMK 1338



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%)

Query: 136  RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
            + + F    +I  L   G +++      EME   + P++  YN++IHG  + G    A +
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 1246

Query: 196  FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               EM+ M L P   TY+ L+  Y K     E  +    ++  G +P  +TYN+LI  + 
Sbjct: 1247 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYC 1306

Query: 256  CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              G L+      + M  +       T   ++   +N   L    +F+  +L+
Sbjct: 1307 RLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLS 1358



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            C+ G ++EA+  F ++    L P++  YN +I GY ++G   EA +   EM E    P  
Sbjct: 1271 CKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNV 1330

Query: 210  DTYDGLIQAYGKYK-------MYDEI--------------DMCLKM-------------- 234
             TY  L++     +        +DE+               +C ++              
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390

Query: 235  MKLDGCSPDHITYNLLIQEFACAGLLK 261
            + L+G S D +TYN+LI      G LK
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLK 1417



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 112/286 (39%), Gaps = 37/286 (12%)

Query: 141  NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            +  +++ +L +    ++     +EM    ++PS+  YN+++  + K G+ ++  + L EM
Sbjct: 1086 DCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEM 1145

Query: 201  KEMNLS--PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            +       P   TY+ +I    +    +E    ++ M+L        TYN LI      G
Sbjct: 1146 ETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARG 1204

Query: 259  LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
             +K++      M  + +     T  A++   +  G+++  +  +  +           + 
Sbjct: 1205 CVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEM---------RAMG 1255

Query: 319  KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
             L +V   N + +     G+                 L  A LL          ++  A 
Sbjct: 1256 LLPDVITYNSLLNGYCKAGN-----------------LKEALLL--------FGDLRRAG 1290

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +   V T NI++  Y ++ D +  R+L  E+  +   P++ T  IL
Sbjct: 1291 LAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTIL 1336


>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 816

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           +S  N +    +I    + G +E+    F +M    + PS+  +NS+IH + K  +  + 
Sbjct: 243 RSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKV 302

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
              +  M+E    P + TY+ LI  Y +    D  +     MK +   PD ++   L+  
Sbjct: 303 ASLVRMMEEFQCFPDTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYG 362

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL---LNSR- 309
           ++  G++ + E   K M  +   +   T  A+   Y+N GML++  +++ R    +NS  
Sbjct: 363 YSIRGMVTKAEALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDRFHHHMNSEC 422

Query: 310 ----------------------TPLKEDLVRKLA-EVYIKNYMFSRLDDLGDDLASRIGR 346
                                   LK+ ++   A  V IK Y    + D   ++A+ + R
Sbjct: 423 FSANIDAFGEKGYIVLAEKAFVCCLKKKMISVSACNVMIKAYGLVGMLDEACEIANGMER 482

Query: 347 TELV-------WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399
            +++         ++LLS A  L  + I   + +M+  K+  +    ++++ ++ K  D 
Sbjct: 483 YDILPDYVTYTSLIQLLSTA-KLPKKAI-YYLEKMKVVKLLSDCIPYSVVISSFAKNGDL 540

Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDA 427
           +    L  E+    V+PDI    IL DA
Sbjct: 541 RMSEYLFREMIMSGVRPDIFVYSILIDA 568



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
            LK     R+  ++FD ++  +   +N  +   ++  + +    +  +R + EM  F + 
Sbjct: 109 ILKEQKDWRRAVEIFDWFRREQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGVA 168

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P    Y ++I+   + G+   ALL+L +M +  L P   T   ++QA+ K   Y+  ++ 
Sbjct: 169 PDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEIF 228

Query: 232 LK------MMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +      + +++G S  ++ TYN LI  +  AG L+++  T+  ML++ +     T  +
Sbjct: 229 FERWSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNS 288

Query: 285 ILDAYMNFGMLDKMEK 300
           ++ A+   G   +MEK
Sbjct: 289 MIHAW---GKHHRMEK 301



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           S+   N +I  Y  +G  +EA    N M+  ++ P   TY  LIQ     K+  +    L
Sbjct: 453 SVSACNVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYL 512

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + MK+     D I Y+++I  FA  G L+  E  ++ M+   +         ++DAY   
Sbjct: 513 EKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEV 572

Query: 293 GMLDKMEKFY 302
           G + +   ++
Sbjct: 573 GNVQQASAYF 582



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 65/153 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+++EA      ME + + P    Y S+I   S      +A+ +L +MK + L      Y
Sbjct: 468 GMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPY 527

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I ++ K       +   + M + G  PD   Y++LI  +A  G +++    +  M  
Sbjct: 528 SVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKK 587

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++   +   +++  Y   G + +    YK L
Sbjct: 588 DGLYENVTIYNSLIKLYTKVGYVPEARGAYKLL 620



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           ++  +VFD  K   +   NEF+   ++ M  + G  + A R  +EM+   L   L  YNS
Sbjct: 646 KEACEVFDSLK--VRGIANEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNS 703

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +I  Y   G+  EAL    +M   N  P   T+  L
Sbjct: 704 VIQMYVSGGRTEEALKIFKKMLASNTPPNDATFQAL 739



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 51/124 (41%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +L    L ++A+   ++M+   L      Y+ +I  ++K G    +     EM    
Sbjct: 495 LIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSG 554

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y  LI AY +     +      +MK DG   +   YN LI+ +   G +    
Sbjct: 555 VRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYTKVGYVPEAR 614

Query: 265 GTYK 268
           G YK
Sbjct: 615 GAYK 618



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R + F    +I    E G +++A   F  M+   L  ++ IYNS+I  Y+K+G   EA  
Sbjct: 556 RPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYTKVGYVPEARG 615

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               +K ++ +      + +I  Y  + M  E       +K+ G + +  ++ +++  + 
Sbjct: 616 AYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIA-NEFSHAMMVCMYK 674

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             G         K M    +  +  +  +++  Y++ G  ++  K +K++L S TP  + 
Sbjct: 675 KVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIFKKMLASNTPPNDA 734

Query: 316 LVRKLAEVYIKN 327
             + L  + +++
Sbjct: 735 TFQALKVILVRS 746


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 120/309 (38%), Gaps = 42/309 (13%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    II +LC+ G + E  +  +EM    + P   IY ++I G+ K+G    A    
Sbjct: 179 NLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLF 238

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+   + P S  +  LI          E D     M   G  PD +TY  LI  +   
Sbjct: 239 SEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKL 298

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +K+    +  M+   +     T  A+ D     G LD           +   L  ++ 
Sbjct: 299 GEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD-----------TANELLHEMC 347

Query: 318 RKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375
           RK  ++ I  Y  + + L   G+ L +                           ++ EM+
Sbjct: 348 RKGLQLNISTYNTIVNGLCKAGNILQAV-------------------------KLMEEMK 382

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGT 435
            A +  +  T   ++ AY K  +    R LL E+  R ++P +VT  +L +    G   +
Sbjct: 383 EAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMN----GLCMS 438

Query: 436 GALEMWKRI 444
           G LE  +R+
Sbjct: 439 GKLEDGERL 447



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++ A     EM    L+ ++  YN+I++G  K G   +A+  + EMKE  L P 
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY  L+ AY K     +    L+ M   G  P  +T+N+L+     +G L+  E   K
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLK 449

Query: 269 SMLTKRMHLRSSTMVAILDAY 289
            ML K +   ++T  +I+  Y
Sbjct: 450 WMLEKGIMPNAATYNSIMKQY 470



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 11/309 (3%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           + PQ+   W N E   I       ++  L   G + EA      ME     P +  Y +I
Sbjct: 100 EFPQLGVCW-NTESYNI-------LMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTI 151

Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
           I GY  +G+  + +  + EM+   L P   TY  +I    K     E +  L+ M   G 
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGV 211

Query: 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
            PDH+ Y  LI  F   G  +     +  M  + +   S    A++      G + + +K
Sbjct: 212 FPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADK 271

Query: 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360
            +  ++       E     L + Y K     +   L + +  +IG T  V     L+   
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMV-QIGLTPNVVTYTALADGL 330

Query: 361 LLSHR--GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             S      + ++ EM    ++ N++T N I+    K  +      L+ E+    + PD 
Sbjct: 331 CKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDT 390

Query: 419 VTIGILYDA 427
           +T   L DA
Sbjct: 391 ITYTTLMDA 399



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           I+ +N+  I+  LC+ G + +AV+  +EM+   L P    Y +++  Y K G+  +A   
Sbjct: 355 ISTYNT--IVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAREL 412

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L EM +  L P   T++ L+         ++ +  LK M   G  P+  TYN +++++  
Sbjct: 413 LREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCI 472

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSST 281
              ++     Y+ M  + +   S+T
Sbjct: 473 RNNMRISTEIYRGMCAQGVVPDSNT 497



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 37/198 (18%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L   G + EA + F EM     +P    Y ++I GY K+G+  +A    N+M ++ 
Sbjct: 256 LICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIG 315

Query: 205 LSPQSDTY----DGLIQAYGKYKMYDEI--DMCLKMMKLD-------------------- 238
           L+P   TY    DGL ++ G+    +E+  +MC K ++L+                    
Sbjct: 316 LTPNVVTYTALADGLCKS-GELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 239 ----------GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
                     G  PD ITY  L+  +   G + +     + ML + +     T   +++ 
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 289 YMNFGMLDKMEKFYKRLL 306
               G L+  E+  K +L
Sbjct: 435 LCMSGKLEDGERLLKWML 452



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/148 (19%), Positives = 59/148 (39%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            ++ F E     +  + E YN +++   ++GK  EA   L  M+     P   +Y  +I 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            Y       ++   +K M+L G  P+  TY+ +I     +G +   E   + M+ + +  
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFP 213

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                  ++D +   G      K +  +
Sbjct: 214 DHVIYTTLIDGFCKLGNTQAAYKLFSEM 241



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 124/320 (38%), Gaps = 44/320 (13%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKP-SLEIYNS 179
           P VFD++  +                L E GL+ EA + F ++   G AL   S  +Y +
Sbjct: 39  PHVFDVFFQV----------------LVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLT 82

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +   SK       L   +E  ++ +   +++Y+ L+ +  +     E    L  M+  G
Sbjct: 83  CLS--SKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKG 140

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           C PD ++Y  +I  +   G L+++    K M  K +     T  +I+      G + + E
Sbjct: 141 CIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGE 200

Query: 300 KFYKRLLNSRTPLKEDLVR--------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
           K  + ++  R    + ++         KL        +FS ++   + +   I  + L+ 
Sbjct: 201 KVLREMM-KRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR-EIVPDSIAFSALI- 257

Query: 352 CLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
                   C LS  G     D +  EM       +  T   ++  Y K+ + K    L +
Sbjct: 258 --------CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHN 309

Query: 408 ELPTRHVKPDIVTIGILYDA 427
           ++    + P++VT   L D 
Sbjct: 310 QMVQIGLTPNVVTYTALADG 329


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 122  IPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
            + +V+D+   +E   I         +I  L + GL+E A   F EM    L P +  YNS
Sbjct: 1206 VKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNS 1265

Query: 180  IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +++GY K G   EALL   +++   L+P   TY+ LI  Y +    +E  +  + M   G
Sbjct: 1266 LLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQG 1325

Query: 240  CSPDHITYNLLIQ 252
            C P+  TY +L++
Sbjct: 1326 CLPNVCTYTILMK 1338



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%)

Query: 136  RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
            + + F    +I  L   G +++      EME   + P++  YN++IHG  + G    A +
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 1246

Query: 196  FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
               EM+ M L P   TY+ L+  Y K     E  +    ++  G +P  +TYN+LI  + 
Sbjct: 1247 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYC 1306

Query: 256  CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
              G L+      + M  +       T   ++   +N   L    +F+  +L+
Sbjct: 1307 RLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLS 1358



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 2/159 (1%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  LC+ G +++A     +M    L+P    Y  +IH + + G   EA    N M    
Sbjct: 1406 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 1465

Query: 205  LSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            L P + T+  +I AY +   +Y       KM++ +G  P+ ITYN+LI      G  +  
Sbjct: 1466 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLE-EGVEPNEITYNVLIHALCRMGRTQLA 1524

Query: 264  EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
               +  ML + +     T   ++D     G  +   +FY
Sbjct: 1525 SHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 1563



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            C+ G ++EA+  F ++    L P++  YN +I GY ++G   EA +   EM E    P  
Sbjct: 1271 CKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNV 1330

Query: 210  DTYDGLIQAYGKYK-------MYDEI--------------DMCLKM-------------- 234
             TY  L++     +        +DE+               +C ++              
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390

Query: 235  MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
            + L+G S D +TYN+LI      G LK  +     M++  +     T   ++ A+   G+
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGL 1450

Query: 295  LDKMEKFYKRLLN 307
            L +  K +  +++
Sbjct: 1451 LREARKIFNNMIS 1463



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 149  LCEEGLMEEAVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
            +C E ++ +  RAF+  E   L+        YN +IHG  K G   +A     +M    L
Sbjct: 1372 ICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL 1431

Query: 206  SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
             P   TY  LI A+ +  +  E       M  DG  P  +T+ ++I  +   G L    G
Sbjct: 1432 QPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYG 1491

Query: 266  TYKSMLTKRMHLRSSTMVAILDAYMNFG 293
             ++ ML + +     T   ++ A    G
Sbjct: 1492 WFRKMLEEGVEPNEITYNVLIHALCRMG 1519



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 162  FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            F EM    L+P    YN+ I     +G    A      +    +S  + TY+ LI    K
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCK 1412

Query: 222  Y-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
               + D  ++ +KM+  +G  PD ITY  LI      GLL+     + +M++  +   + 
Sbjct: 1413 TGNLKDAKELQMKMVS-NGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAV 1471

Query: 281  TMVAILDAYMNFGMLDKMEKFYKRLL 306
            T   I+ AY   G L     +++++L
Sbjct: 1472 TFTVIIHAYCRRGNLYSAYGWFRKML 1497



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 35/140 (25%)

Query: 150  CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
            CE GL+ EA + F  M    L PS   +  IIH Y + G    A  +  +M E  + P  
Sbjct: 1446 CERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 1505

Query: 210  DTYDGLIQAY-----------------------GKYKMYDEIDMCLKM------------ 234
             TY+ LI A                         KY     ID   K+            
Sbjct: 1506 ITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFE 1565

Query: 235  MKLDGCSPDHITYNLLIQEF 254
            M  +G  PD++T+  L++ F
Sbjct: 1566 MHQNGIHPDYLTHKALLKGF 1585



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 112/286 (39%), Gaps = 37/286 (12%)

Query: 141  NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200
            +  +++ +L +    ++     +EM    ++PS+  YN+++  + K G+ ++  + L EM
Sbjct: 1086 DCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEM 1145

Query: 201  KEMNLS--PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            +       P   TY+ +I    +    +E    ++ M+L        TYN LI      G
Sbjct: 1146 ETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARG 1204

Query: 259  LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
             +K++      M  + +     T  A++   +  G+++  +  +  +           + 
Sbjct: 1205 CVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEM---------RAMG 1255

Query: 319  KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
             L +V   N + +     G+                 L  A LL          ++  A 
Sbjct: 1256 LLPDVITYNSLLNGYCKAGN-----------------LKEALLL--------FGDLRRAG 1290

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
            +   V T NI++  Y ++ D +  R+L  E+  +   P++ T  IL
Sbjct: 1291 LAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTIL 1336



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 133  EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
            E    NE     +I  LC  G  + A   F EM    L  +   Y  +I G  K+G + +
Sbjct: 1499 EGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWED 1558

Query: 193  ALLFLNEMKEMNLSPQSDTYDGLIQAY 219
            A+ F  EM +  + P   T+  L++ +
Sbjct: 1559 AMRFYFEMHQNGIHPDYLTHKALLKGF 1585


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 14/305 (4%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +N ++   +I +L +     EA+  ++ M  EGF  +PSL+ Y+S++ G  K    +  +
Sbjct: 186 LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF--RPSLQTYSSLMVGLGKRRDIDSVM 243

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             L EM+ + L P   T+   I+  G+    +E    LK M  +GC PD +TY +LI   
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLK 313
             A  L   +  ++ M T R      T + +LD + +   LD +++F+  +  +   P  
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP-- 361

Query: 314 EDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
            D+V    L +   K   F    D  D +  + G    +     L    L  HR  D+  
Sbjct: 362 -DVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALE 419

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI-LYDAR 428
           +   MES  V+    T  + +  Y K  D         ++ T+ + P+IV     LY   
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479

Query: 429 RIGFD 433
           + G D
Sbjct: 480 KAGRD 484



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 23/286 (8%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA + F  M+   LKP++  YN+++ G  K GK  EA+     M +    P + T++ 
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT 613

Query: 215 LIQAYGKYKMYDEIDMCLKMM--KLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           L     K    DE+ + LKM+   +D GC PD  TYN +I      G +K     +  M 
Sbjct: 614 LFDCLCKN---DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM- 669

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL--NSRTPLK---EDLVRK-LAEVYI 325
            K ++    T+  +L   +   +++   K     L   +  P     EDL+   LAE  I
Sbjct: 670 KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI 729

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME----SAKVRW 381
            N + S  + L  +   R G + LV  +R   ++C   H  +       E       V+ 
Sbjct: 730 DNAV-SFSERLVANGICRDGDSILVPIIR---YSC--KHNNVSGARTLFEKFTKDLGVQP 783

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            + T N+++   L+    +  + +  ++ +    PD+ T   L DA
Sbjct: 784 KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           L  + R R+  Q+F   K+I     +      ++    + G ++EA++   EM     +P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
            + + NS+I+   K  + +EA      MKEM L P   TY+ L+   GK     E     
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 233 KMMKLDGCSPDHITYNLL 250
           + M   GC P+ IT+N L
Sbjct: 597 EGMVQKGCPPNTITFNTL 614



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            +I  L + G + EA + F+ M  +  +P+  IYN +I+G+ K G+ + A      M +  
Sbjct: 897  LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            + P   TY  L+         DE     K +K  G +PD + YNL+I     +  L+   
Sbjct: 957  VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016

Query: 265  GTYKSMLTKR 274
              +  M T R
Sbjct: 1017 VLFNEMKTSR 1026



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQS 209
           + G ++E    ++EM     + +   +N +I G  K G  ++AL L+ + M + + SP +
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  LI    K     E     + M   GC P+   YN+LI  F  AG        +K 
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           M+ + +     T   ++D     G +D+   ++K L  S
Sbjct: 952 MVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+  F++M+   + P++   N+ ++  +K G+  EA      +K++ L P S TY+ +++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            Y K    DE    L  M  +GC PD I  N LI 
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLIN 546



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L + G   EA + F  ++   L P    YN ++  YSK+G+ +EA+  L+EM E    P 
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537

Query: 209 SDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
               + LI    K    DE   + M +K MKL    P  +TYN L+      G ++    
Sbjct: 538 VIVVNSLINTLYKADRVDEAWKMFMRMKEMKL---KPTVVTYNTLLAGLGKNGKIQEAIE 594

Query: 266 TYKSMLTKRMHLRSSTMVAILD 287
            ++ M+ K     + T   + D
Sbjct: 595 LFEGMVQKGCPPNTITFNTLFD 616



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 19/264 (7%)

Query: 168  FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              ++P L  YN +I G  +      A     ++K     P   TY+ L+ AYGK    DE
Sbjct: 779  LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838

Query: 228  IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAIL 286
            +    K M    C  + IT+N++I     AG +      Y  +++ R     + T   ++
Sbjct: 839  LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898

Query: 287  DAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAEVYIKNYMFSRLDDLG-- 337
            D     G L + ++ ++ +L+        +   L+    K  E      +F R+   G  
Sbjct: 899  DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958

Query: 338  DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
             DL +    + LV CL ++         G+    +E++ + +  +V   N+I+    K  
Sbjct: 959  PDLKT---YSVLVDCLCMVGRV----DEGL-HYFKELKESGLNPDVVCYNLIINGLGKSH 1010

Query: 398  DFKHLRVLLSELPT-RHVKPDIVT 420
              +   VL +E+ T R + PD+ T
Sbjct: 1011 RLEEALVLFNEMKTSRGITPDLYT 1034



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%)

Query: 109  VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
            +I  L  S R  +   +F+  K       + +    +I  L   G++EEA + + E++  
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061

Query: 169  ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
             L+P++  +N++I GYS  GK   A      M     SP + TY+ L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 37/186 (19%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEG 167
           I  L   S +R +  V   W  +EK   + +  +  I +  LC+ G   EA      M  
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK------ 221
             + P+L  YN++I G  ++ + ++AL     M+ + + P + TY   I  YGK      
Sbjct: 392 QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451

Query: 222 ---------------------YKMYD--------EIDMCLKMMKLDGCSPDHITYNLLIQ 252
                                  +Y         E       +K  G  PD +TYN++++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511

Query: 253 EFACAG 258
            ++  G
Sbjct: 512 CYSKVG 517



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 145  IIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            II  L +   +EEA+  F EM+    + P L  YNS+I      G   EA    NE++  
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061

Query: 204  NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
             L P   T++ LI+ Y      +      + M   G SP+  TY  L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%)

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           LF    K++ + P+  TY+ LI    +  M +        +K  GC PD  TYN L+  +
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
             +G +  +   YK M T      + T   ++   +  G +D     Y  L++ R
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 129/317 (40%), Gaps = 39/317 (12%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+  L+ EA   F EM    +  ++  Y++IIHG+  +GK  EAL FLNEM    
Sbjct: 209 IIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKA 268

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-----CAGL 259
           ++P    Y+ L+ A  K     E    L ++      P+ ITYN LI  +A       GL
Sbjct: 269 INPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGL 328

Query: 260 L-------------------KRME---GTYKSMLTKRMHLRSSTMVAILDAYMNFGML-- 295
           +                   KR+E     YK M  K M   + T  +++D     G +  
Sbjct: 329 MGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISY 388

Query: 296 --DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
             D +++ + R  ++       L+  L     KN    +   L + +  + G    ++ L
Sbjct: 389 AWDLIDEMHDRGHHANVITYNSLINGLC----KNGQLDKAIALINKMKDQ-GIQPDMYTL 443

Query: 354 RLLSHACLLSHRGI---DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
            +L H  L   + +     + +++       NV T NII+  + K         L S++ 
Sbjct: 444 NILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKME 503

Query: 411 TRHVKPDIVTIGILYDA 427
                P+ +T  I+  A
Sbjct: 504 DSGCSPNAITFKIIICA 520



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 3/198 (1%)

Query: 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           W+    +    + +++ +  +++K + +  +  N      +I  LC+ G +  A     E
Sbjct: 336 WSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDE 395

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYK 223
           M       ++  YNS+I+G  K G+ ++A+  +N+MK+  + P   T + L+     K K
Sbjct: 396 MHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGK 455

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
                    + +   G  P+  TYN++I      GLL         M        + T  
Sbjct: 456 RLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFK 515

Query: 284 AILDAYMNFGMLDKMEKF 301
            I+ A +  G  DK EK 
Sbjct: 516 IIICALLEKGETDKAEKL 533



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 109/277 (39%), Gaps = 24/277 (8%)

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKF---NEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
           +   F   PSL   +S  H +S+   F   ++AL   + M  M  +P    ++ ++ ++ 
Sbjct: 17  KFPSFLPNPSLPKLHS--HFHSRPPSFENVDDALFQFHRMLCMRHTPPIIQFNKILDSFA 74

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K K Y  +    + ++L    PD  T N+LI  F   G +         +L       + 
Sbjct: 75  KMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTV 134

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE-------DLVRKLAEVYIKNYMFSRL 333
           T+  ++      G + K   F+ +LL     L +       + V K+ E      +  R+
Sbjct: 135 TLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRI 194

Query: 334 DDLGDDLASRIGRTELVWCL---RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
           D    +  + +    ++ CL   +L+S AC        ++  EM    +  NV T + I+
Sbjct: 195 DGRLTE-PNVVMYNTIIDCLCKRKLVSEAC--------NLFSEMSVKGISANVVTYSAII 245

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             +  +         L+E+  + + PD+     L DA
Sbjct: 246 HGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDA 282



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 140/360 (38%), Gaps = 24/360 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +G +++A+    ++     +     Y ++I+G  KIG+   A+  L  +    
Sbjct: 139 LIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRL 198

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ +I    K K+  E       M + G S + +TY+ +I  F   G L    
Sbjct: 199 TEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEAL 258

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
           G    M+ K ++        ++DA    G + + +     ++  +T LK +++       
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIV--KTCLKPNVIT--YNTL 314

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
           I  Y     + +G      +G T  VW   ++ +      R  ++  + +EM    +  N
Sbjct: 315 IDGYAKHVFNAVG-----LMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPN 369

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
             T N ++    K     +   L+ E+  R    +++T    Y++   G    G L+  K
Sbjct: 370 TVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVIT----YNSLINGLCKNGQLD--K 423

Query: 443 RIGFLFKTVEINTDP-------LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
            I  + K  +    P       L+  +  KG  L+  + ++  L         +TY  +I
Sbjct: 424 AIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIII 483


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 25/364 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  E+A R F +M+    +P++  Y ++I G    G    A+   + M    + P 
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPN 389

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY+ LI    + +      + L +M  +GCSP+ +TYN +I+ +   G  K+      
Sbjct: 390 TVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMN 449

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE----DLVRKLAEVY 324
           +ML +       T   I+  Y + G      +    + +      E    +L+    ++ 
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 325 IKNYMFSRLDDLGDD--LASRIGRTELV--WCL--RLLSHACLLSHRGIDSVVREMESAK 378
                F   +++ DD    + +  T L+  +C   +L +   LL H         M+ + 
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH---------MKRSG 560

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
            R NV T N+++    K  +F     L   +    + P++VT   + D        + AL
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 439 EMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           EM+ ++   G L   +  ++    L   GK   +   E +++ LE +       TY  +I
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGK---VEEAENLFAELERHGLIPDEITYVKMI 677

Query: 496 DLVI 499
           +  I
Sbjct: 678 EAYI 681



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 4/182 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G    A+R    M     KP    Y  +I G+ KI K   A    NEM +  
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  LI  Y K +  D     L+ MK  GC P+  TYN+LI            E
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD-KMEKFYKRLLNSRTP---LKEDLVRKL 320
              K M+ + +     T  A++D     G     +E F K +     P       L+R L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 321 AE 322
            +
Sbjct: 646 GQ 647



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 5/217 (2%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEE 152
           L  DG    D  W+    +    +  ++   F ++  +    +  NE     +I   C++
Sbjct: 485 LMRDGGCKPDE-WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             ++ A    + M+    +P+++ YN +IHG +K   F+ A      M E  + P   TY
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 213 DGLIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I    K       ++M  KM++  GC P+ +TY+ LI+     G ++  E  +  + 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              +     T V +++AY+  G ++    F  R++ +
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +  ++ A++ F +M     +P+   Y+++I+G    G+ NEA   + EM    + P +
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T  G I A      Y++       MK  GC P+  TY  LI     +G+LK   G +  
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHR 380

Query: 270 M 270
           M
Sbjct: 381 M 381



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+   +S  +    ++ D+ ++    + +E++  ++I   C+   ME A   F EM   
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P+   Y ++I GY K  K + A   L  MK     P   TY+ LI    K   +   
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +   K+M  +G  P+ +TY  +I      G        +  M+ +       T  +++ A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
               G +++ E  +  L        E    K+ E YI
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  F    ++  L   G+    +  +  M    ++P+L IYN++I+   K G   +A  
Sbjct: 177 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 236

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + ++ E  +SP + TY  +I  + +    D        M  +GC P+ +TY+ LI    
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 256 CAG 258
            +G
Sbjct: 297 DSG 299



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 35/187 (18%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME--------------------------GFAL- 170
           N +    +I  LC  G+++ A+  F  M                            F + 
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 171 --------KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                    P++  YN +I GY  +G   +A+L +N M +   S    TY+ +I+ Y   
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                    L +M+  GC PD  +Y  LI  F     ++   G +  M+   +     T 
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 283 VAILDAY 289
            A++D Y
Sbjct: 534 TALIDGY 540



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           KN S S  + ++F+  K IE+  + N      +I  L +EG +EEA   F E+E   L P
Sbjct: 612 KNGSTSLAL-EMFN--KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDE 227
               Y  +I  Y   GK   A  FL  M +    P   TY  LI+    +Y + D+
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQ 724


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 20/330 (6%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +++ F    ++ ML ++ L++EAV  F+E       P +  +N +I G  +IG+ ++A  
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFE 235

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI----DMCLKMMKLDGCSPDHITYNLLI 251
           F   M      P   +Y+ LI  + +    +EI    D+  + M + G SPD ITY  +I
Sbjct: 236 FFQNMGNFGCFPDIVSYNTLINGFCR---VNEISKGHDLLKEDMLIKGVSPDVITYTSII 292

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRT 310
             +   G +K     +  M++  +     T   ++D +   G M   M  + K LL    
Sbjct: 293 SGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL 352

Query: 311 PLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGI 367
           P   D+V    L + Y +    ++   L +++  R     +     L++  C  +  R  
Sbjct: 353 P---DVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            + +R ++S++V       N ++  + K         +++E+  +  +PD +T  IL   
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI-- 467

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
             IG    G   M + I   +K +EIN  P
Sbjct: 468 --IGNCMKG--RMVEAISTFYKMIEINCVP 493



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C EG + + ++ ++EM+   L P++  Y  +I+   K  +  EA  FL  +K   
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P+   Y+ +I  + K    DE +  +  M+   C PD IT+ +LI      G +    
Sbjct: 421 VVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAI 480

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVRKL 320
            T+  M+         T+ +++   +  GM ++  +  +  L       + L   L RK 
Sbjct: 481 STFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPLTRKS 540

Query: 321 AEV 323
           + V
Sbjct: 541 SRV 543



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/349 (18%), Positives = 134/349 (38%), Gaps = 35/349 (10%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ GL + A   F  M    + P   I   ++  Y+++GK + A  FLNE+    +   
Sbjct: 119 LCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVS 178

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ L+    K  + DE  +  +        PD  ++N+LI+     G + +    ++
Sbjct: 179 PFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ 238

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           +M                    NFG    +   Y  L+N    + E              
Sbjct: 239 NM-------------------GNFGCFPDIVS-YNTLINGFCRVNE-------------- 264

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
           +    D L +D+  +    +++    ++S  C L   +    +  EM S+ ++ N  T N
Sbjct: 265 ISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFN 324

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
           +++  + K+ + +   V+  ++      PD+VT   L D      +    L++W+ +   
Sbjct: 325 VLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384

Query: 448 FKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             +  + T  +++    K + +R        L+      K + Y  +ID
Sbjct: 385 NLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVID 433



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 30/338 (8%)

Query: 183 GYSKIGKFNEALLFLN--EMKEMNLSPQS--DTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +  I +F++ LL L   E    +LS     +TYD L++   K  + D   +    M+ D
Sbjct: 79  AFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSD 138

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK- 297
           G  PD     LL+  +A  G L   +     +    + +       +L+  +   ++D+ 
Sbjct: 139 GILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198

Query: 298 -------MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                  +E ++   + S   L   L R + E+      F  + + G          ++V
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCR-IGEIDKAFEFFQNMGNFG-------CFPDIV 250

Query: 351 WCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
               L++  C ++   +G D +  +M    V  +V T   I+  Y K+ D K    L  E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMWKRIGFLFKTVEINTDPLVLAVYG 464
           + +  +KP+  T  +L D    GF   G    A+ M++++  L    ++ T   ++  Y 
Sbjct: 311 MVSSGIKPNDFTFNVLID----GFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYC 366

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +   +    +++  ++  +     +TY  LI+ + K N
Sbjct: 367 REGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKEN 404


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 5/171 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           + A+IR L  + +   IPQ   ++K +       +      +I  L + G +  AVR F+
Sbjct: 367 YTALIRGLLQTGK---IPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 423

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
            ME   L P+  +Y+++IHG  K  K + AL  L +MK+   +P + TY+ LI    K  
Sbjct: 424 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 483

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
             +        M   GC PD  TYN+LI     AG      G    M + R
Sbjct: 484 DVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR 534



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 40/283 (14%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  L +   ++EAV   +++      P++  YN++++G  K+G+  EA+  L ++ +  
Sbjct: 265 IVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 324

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P   TY  LI   GK K   E     K M   G + D + Y  LI+     G + +  
Sbjct: 325 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQAS 384

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             YK+M +        T+  ++D     G +    + +K +            R LA   
Sbjct: 385 SVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM----------EARGLAP-- 432

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRW 381
                                  E+V+    L H  L   R +D  +    +M+ A    
Sbjct: 433 ----------------------NEVVY--SALIHG-LCKARKMDCALEMLAQMKKAFCTP 467

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +  T NI++    K  D +  R    E+     KPD+ T  IL
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 510



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S++ +I     ++K++E   +  NE     +I  LC+   M+ A+    +M+     P  
Sbjct: 410 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 469

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN +I G  K G    A  F +EM E    P   TY+ LI    K    D        
Sbjct: 470 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDA-----AC 524

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLK 261
             LD  S     Y+ L+     +G L+
Sbjct: 525 GVLDDMSSSRFVYSSLVDGLCKSGKLE 551


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 13/332 (3%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    +I  +C++G ++ A+  F+E  G  LKPS+ +YN++I G S+ G   +AL  +
Sbjct: 327 DEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLM 386

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N+M +  +SP   TY+ +I    K     + +  L      G  PD  T+N LI  +   
Sbjct: 387 NDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKR 446

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             +    G   SM +  +     T  +IL+        + + + +K ++           
Sbjct: 447 LKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITY 506

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREM 374
             L E   K    +   DL +++ +R    + V    ++S  C  ++  +D    + R M
Sbjct: 507 NILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFC--NNGDLDEAYQLFRRM 564

Query: 375 ESA-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           E   ++   V T NI++ A+ +  D    + L  E+  +   PD  T  ++ D    GF 
Sbjct: 565 EQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMID----GFC 620

Query: 434 GTGALEMWKRIGFLFKTVEINTDPLVLAVYGK 465
             G +       FL K +EI   P  L  +G+
Sbjct: 621 KVGNVN--SGYDFLLKEIEIGFVP-SLTTFGR 649



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-------K 189
           I  FN  K++ +LC++G ++E  +   ++    + P+L  +N  I G  + G       K
Sbjct: 216 IATFN--KLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSK 273

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
             EA  +L++M    L P   TY+ +I  Y K     +    LK  K  G  PD  TY  
Sbjct: 274 VVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCS 333

Query: 250 LI 251
           LI
Sbjct: 334 LI 335



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 26/343 (7%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEE 152
           ++H+G    D     IR +K+  R+++      +  N+  +   +N      +I    EE
Sbjct: 137 MKHEG-IAPDVCTFTIR-IKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEE 194

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
               EA   F +M    + P +  +N ++H   K G   E    LN++ +  + P   T+
Sbjct: 195 NYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTF 254

Query: 213 DGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
           +  IQ         G      E +  L  M   G  PD  TYN +I  ++  G ++    
Sbjct: 255 NIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASR 314

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKFYKRLLNSRTPLKEDLVRKLA 321
             K    K       T  +++      G +D      E+   + L     L   L++ L+
Sbjct: 315 ILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLS 374

Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR- 380
           +  +       ++D+     S+ G +  +W   L+ +   L   G  S    + +A +  
Sbjct: 375 QQGLVLKALQLMNDM-----SKEGMSPDIWTYNLVING--LCKMGCVSDANNLLNAAIAK 427

Query: 381 ---WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
               ++ T N ++  Y K     +   +L  + +  V PD++T
Sbjct: 428 GYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVIT 470



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G ++EAV  F+ M+ +  +PS+  YN+I++   + G FN+A      MK   ++P   T
Sbjct: 89  KGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCT 148

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +   I+++ + K        L  M   GC  + + Y  +I  F
Sbjct: 149 FTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGF 191


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 171/435 (39%), Gaps = 88/435 (20%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG+LC+   ++EAV  F+E++     P +  YN++I GY  +GKFNEA   L   K   
Sbjct: 313 MIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKG 372

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK--- 261
             P    Y+ ++   G+    +E    L+ MK+D  +P+  +YN+LI     AG L+   
Sbjct: 373 CIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAAL 431

Query: 262 ------RMEGTYKSMLTKRMHL--------------------------RSSTMVAILDAY 289
                 +  G + +++T  + +                           S T  +++D  
Sbjct: 432 KVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGL 491

Query: 290 MNFGMLDKMEKFYKRLLNS-RTP---LKEDLVRKLAE----------------------- 322
              G ++     Y+++L+S +TP   +   L+R   +                       
Sbjct: 492 GRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDL 551

Query: 323 VYIKNYMFSRLD----DLGDDLASRI---GRTELVWCLRLLSHACLLSHRGIDS--VVRE 373
           + + NYM         + G  L   I   G T  V    +L H  +      D+  +  E
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE 611

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           M+   +  +    NI++  + K         LL E+ T+ ++P +VT G +        D
Sbjct: 612 MKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV-------ID 664

Query: 434 GTGALEMWKRIGFLFKTVEINTDPLVLAVY-----GKGHFLRYCEEVYSSLEPYSRE--- 485
           G   ++       LF+  +     L + VY     G G   R  +E Y  LE   ++   
Sbjct: 665 GLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRI-DEAYLILEELMQKGLT 723

Query: 486 KKRWTYQNLIDLVIK 500
              +T+  L+D ++K
Sbjct: 724 PNTYTWNCLLDALVK 738



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 61/97 (62%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   F+E +  A+  ++ +Y+S+I G+ K+G+ +EA L L E+ +  L+P + T++ 
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L+ A  K +  DE  +C + MK   C P+ +TY++++
Sbjct: 732 LLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMV 768



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA+  FQ M+     P+   Y+ +++G  K+ KFN+A +F  EM++  L P + TY  
Sbjct: 742 IDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTT 801

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I    +     E     +  K  G  PD   YN +I+  + A         ++    K 
Sbjct: 802 MISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKG 861

Query: 275 MHLRSSTMVAILDA 288
             + S T V +LDA
Sbjct: 862 CRIYSKTCVVLLDA 875



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G  ++  + F EM+   L      YN +I G+ K GK N+A   L EMK   
Sbjct: 592 LIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKG 651

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  +I    K    DE  M  +  K      + + Y+ LI  F   G +    
Sbjct: 652 LQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAY 711

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              + ++ K +   + T   +LDA +    +D+    ++ + N + P  E
Sbjct: 712 LILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNE 761



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +   EG ++ A+    EM+  +    L +YN  I  + K+GK + A  F +E+K   
Sbjct: 243 LICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG 302

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           L P   T+  +I    K +  DE     + +  +   P    YN +I  +   G
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVG 356



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/281 (18%), Positives = 117/281 (41%), Gaps = 18/281 (6%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA    + M  F  +P+   Y ++I   S   + +  L  L +M+E+        +  
Sbjct: 183 LREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTT 242

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           LI  + +    D     L  MK +  + D + YN+ I  F   G +      +  + ++ 
Sbjct: 243 LICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG 302

Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
           +     T  +++        +D+  + ++ L         D  + +  VY  N M     
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEEL---------DSNKSVPCVYAYNTMIMGYG 353

Query: 335 DLG--DDLASRIGRTELVWCL-RLLSHACLLSHRG----IDSVVREMESAKVRW--NVTT 385
            +G  ++  S + R +   C+  ++++ C+L+  G    ++  +R +E+ K+    N+T+
Sbjct: 354 SVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTS 413

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            NI++    K  + +    +   +    + P+I+T+ I+ D
Sbjct: 414 YNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMID 454



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 132 IEKSRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +++ + N FN+  ++  +C +     G ++ A + F E++   L P    + S+I    K
Sbjct: 260 LDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCK 319

Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             + +EA+    E+      P    Y+ +I  YG    ++E    L+  K  GC P  I 
Sbjct: 320 AERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIA 379

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           YN ++    C G   ++E   + +   +M
Sbjct: 380 YNCIL---TCLGRKGKVEEALRILEAMKM 405


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+   M  A +   +M  F + P++ +YN +I GY K G  +EAL   +E+++  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  LI+        +E D  L+ MK  G  P+ +TYN LI  +   G +++  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
                M  K +     T   ++D Y   G ++     Y  ++
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMV 465



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 150/399 (37%), Gaps = 59/399 (14%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+ L+NS RSR    VF++   +E S+        +I    E GL+EEA+  + +M+  
Sbjct: 96  LIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD-- 153

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK------- 221
            + P+++  N ++ G  K G+F+       +M     SP   TY  LI    +       
Sbjct: 154 -VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           ++++DE       M      P  + Y +LI+       +   E  +++M    M     T
Sbjct: 213 FRLFDE-------MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++D Y     + K  + Y+ +L                    + +   +   G  + 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLG-------------------DGLLPNVVTFGILID 306

Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH 401
                 E+V   + L          ID     M S  V  N+   N ++  Y K  +   
Sbjct: 307 GLCKTDEMVSARKFL----------ID-----MASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 402 LRVLLSELPTRHVKPDIVTIGILYDARRIGFD----GTGALEMWKRIGFLFKTVEINTDP 457
              L SE+    + PD+ T  IL      G D      G L+  K+ GFL   V  NT  
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKG-LCGVDRMEEADGLLQEMKKKGFLPNAVTYNT-- 408

Query: 458 LVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
            ++  Y K   +    EV S +     E    T+  LID
Sbjct: 409 -LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEE 157
           DG    D   +  +FL + +    +P +F             +N   +I   C+ G + E
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIF------------VYNC--LIDGYCKAGNLSE 351

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+    E+E   + P +  Y+ +I G   + +  EA   L EMK+    P + TY+ LI 
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 218 AYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            Y K   M   I++C +M +  G  P+ IT++ LI  +  AG ++   G Y  M+ K + 
Sbjct: 412 GYCKEGNMEKAIEVCSQMTE-KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                  A++D +   G   +  + +K +
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEM 499



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I   C+EG ME+A+    +M    ++P++  ++++I GY K GK   A+   
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            EM    L P    Y  LI  + K     E     K M+  G  P+  T + LI
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 127/329 (38%), Gaps = 42/329 (12%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    II  LC+   M++A R  ++M     +P+   YNS+IHGYS  G +NE++    +
Sbjct: 281 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 340

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY------------ 247
           M    + P  D  +  I A  K+   +E       M L G  PD I+Y            
Sbjct: 341 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYV 400

Query: 248 --------------------------NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
                                     N+LI  +A  G++ +    ++ M  K M   + T
Sbjct: 401 TVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 460

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++ +    G LD     +  +++   P  E +   L +    +    +  +L  ++ 
Sbjct: 461 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 520

Query: 342 SR-IGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
           ++ I    + +   ++++ C       G D ++  M     R NV T N ++  Y  + +
Sbjct: 521 NKDIPPPGVKYFSSIINNLCKEGRVAEGKD-IMDMMVQTGQRPNVVTFNSLMEGYCLVGN 579

Query: 399 FKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            +    LL  + +  ++P+    G L D 
Sbjct: 580 MEEAFALLDAMASIGIEPNCYIYGTLVDG 608



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K+I    +  F+S  II  LC+EG + E       M     +P++  +NS++ GY  +
Sbjct: 520 MNKDIPPPGVKYFSS--IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLV 577

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           G   EA   L+ M  + + P    Y  L+  Y K    D+     + M   G  P  + Y
Sbjct: 578 GNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLY 637

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++++      GL +    T    +   M + S T V+I
Sbjct: 638 SIILH-----GLFQARRTTAAKKMFHEM-IESGTTVSI 669



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F+   I G + ++G +++A   F EM    + P + I NSII    K+ + ++A   +
Sbjct: 210 DDFSYSLIYGFV-KDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIV 268

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M +  ++P   TY  +I    K K  D+ +  L+ M   G  P+ ITYN LI  ++ +
Sbjct: 269 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328

Query: 258 GLLKRMEGTYKSM 270
           G+       +K M
Sbjct: 329 GMWNESVRVFKQM 341



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 116/282 (41%), Gaps = 12/282 (4%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+M++A+  F++M+   + P    + ++I    +IG+ ++AL   N M ++ + P    Y
Sbjct: 437 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 496

Query: 213 DGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             LIQ    + ++    ++  +MM  D   P    ++ +I      G +   +     M+
Sbjct: 497 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 556

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
                    T  ++++ Y   G +++       + +        +   L + Y KN    
Sbjct: 557 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKN---G 613

Query: 332 RLDD----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTT 385
           R+DD      D L   +  T +++ + L  H    + R   +  +  EM  +    ++ T
Sbjct: 614 RIDDALTVFRDMLHKGVKPTSVLYSIIL--HGLFQARRTTAAKKMFHEMIESGTTVSIHT 671

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++L    +        +LL +L   +VK DI+T  I+  A
Sbjct: 672 YGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISA 713



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 53/131 (40%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  LC+   M++A    Q+M    + P L  Y+ II G  K    ++A   L +M E
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
               P S TY+ LI  Y    M++E     K M   G  P     N  I      G    
Sbjct: 309 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 368

Query: 263 MEGTYKSMLTK 273
            +  + SM+ K
Sbjct: 369 AKCIFDSMVLK 379



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 62/127 (48%)

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S+I+G+ K G+ ++A     EM E  + P+    + +I+   K K  D+ +  ++ M   
Sbjct: 215 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD  TY+L+I     +  + + E   + M+       S T  +++  Y   GM ++ 
Sbjct: 275 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 334

Query: 299 EKFYKRL 305
            + +K++
Sbjct: 335 VRVFKQM 341



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 38/184 (20%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMW-KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           +F ++I  L    R  +   + DM  +  ++  +  FNS  ++   C  G MEEA     
Sbjct: 531 YFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS--LMEGYCLVGNMEEAFALLD 588

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQA- 218
            M    ++P+  IY +++ GY K G+ ++AL    +M    + P S  Y     GL QA 
Sbjct: 589 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 648

Query: 219 -----------------------YG-------KYKMYDEIDMCLKMMKLDGCSPDHITYN 248
                                  YG       +    DE +M L+ +       D IT+N
Sbjct: 649 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 708

Query: 249 LLIQ 252
           ++I 
Sbjct: 709 IVIS 712


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 25/364 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G  E+A R F +M+    +P++  Y ++I G    G    A+   + M    + P 
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY+ LI    + +      + L +M  +GCSP+ +TYN +I+ +   G  K+      
Sbjct: 390 TVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMN 449

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE----DLVRKLAEVY 324
           +ML +       T   I+  Y + G      +    + +      E    +L+    ++ 
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 325 IKNYMFSRLDDLGDD--LASRIGRTELV--WCL--RLLSHACLLSHRGIDSVVREMESAK 378
                F   +++ DD    + +  T L+  +C   +L +   LL H         M+ + 
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH---------MKRSG 560

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
            R NV T N+++    K  +F     L   +    + P++VT   + D        + AL
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 439 EMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495
           EM+ ++   G L   +  ++    L   GK   +   E +++ LE +       TY  +I
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGK---VEEAENLFAELERHGLIPDEITYVKMI 677

Query: 496 DLVI 499
           +  I
Sbjct: 678 EAYI 681



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 4/182 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ G    A+R    M     KP    Y  +I G+ KI K   A    NEM +  
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY  LI  Y K +  D     L+ MK  GC P+  TYN+LI            E
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD-KMEKFYKRLLNSRTP---LKEDLVRKL 320
              K M+ + +     T  A++D     G     +E F K +     P       L+R L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 321 AE 322
            +
Sbjct: 646 GQ 647



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 5/217 (2%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEE 152
           L  DG    D  W+    +    +  ++   F ++  +    +  NE     +I   C++
Sbjct: 485 LMRDGGCKPDE-WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             ++ A    + M+    +P+++ YN +IHG +K   F+ A      M E  + P   TY
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 213 DGLIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             +I    K       ++M  KM++  GC P+ +TY+ LI+     G ++  E  +  + 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              +     T V +++AY+  G ++    F  R++ +
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C +  ++ A++ F +M     +P+   Y+++I+G    G+ NEA   + EM    + P +
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T  G I A      Y++       MK  GC P+  TY  LI     +GLLK   G +  
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 270 M 270
           M
Sbjct: 381 M 381



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           +I+   +S  +    ++ D+ ++    + +E++  ++I   C+   ME A   F EM   
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
            L P+   Y ++I GY K  K + A   L  MK     P   TY+ LI    K   +   
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
           +   K+M  +G  P+ +TY  +I      G        +  M+ +       T  +++ A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
               G +++ E  +  L        E    K+ E YI
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R+  F    ++  L   G+    +  +  M    ++P+L IYN++I+   K G   +A  
Sbjct: 177 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 236

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + ++ E  +SP + TY  +I  + +    D        M  +GC P+ +TY+ LI    
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 256 CAG 258
            +G
Sbjct: 297 DSG 299



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 35/187 (18%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME--------------------------GFAL- 170
           N +    +I  LC  GL++ A+  F  M                            F + 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 171 --------KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
                    P++  YN +I GY  +G   +A+L +N M +   S    TY+ +I+ Y   
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
                    L +M+  GC PD  +Y  LI  F     ++   G +  M+   +     T 
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 283 VAILDAY 289
            A++D Y
Sbjct: 534 TALIDGY 540



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 114 KNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           KN S S  + ++F+  K IE+  + N      +I  L +EG +EEA   F E+E   L P
Sbjct: 612 KNGSTSLAL-EMFN--KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDE 227
               Y  +I  Y   GK   A  FL  M +    P   TY  LI+    +Y + D+
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQ 724


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 151/344 (43%), Gaps = 21/344 (6%)

Query: 148  MLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-L 205
            + CEE  L  EA + F +M  + ++PS  +Y S++  Y K+G    A   +++ +E   L
Sbjct: 716  LCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLL 775

Query: 206  SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
                  + G+I+AYGK K++ + +  +  ++      D   +N LI  +A +G  +R   
Sbjct: 776  FDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARA 835

Query: 266  TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-------SRTPLKEDLVR 318
             + +M+         ++  ++ A +  G LD++    + L +       S   L  D   
Sbjct: 836  IFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFA 895

Query: 319  KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
                ++    ++  +   G      + R      + LL+    +  R ++++V EME A 
Sbjct: 896  HAGNIFEVKKIYQGMKAAGYFPTMHLYRI----MIGLLAKGKRV--RDVEAMVSEMEVAX 949

Query: 379  VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD---IVTIGILYDARRIGFDGT 435
             + +++  N +L  Y  + DFK    +   +    +KPD     T+ ++Y   R   +G 
Sbjct: 950  FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 1009

Query: 436  GALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
              +   +R+G   K   ++T   +++ +GK   +   EE++  L
Sbjct: 1010 SLMHEMRRVGLEPK---LDTYKSLISAFGKLQMVEQAEELFEGL 1050



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+  EA R F+++E     P    YNS+++ +++ G  ++      +M +M       TY
Sbjct: 375 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 434

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +I  YGK   +D        MKL G SPD +TY +LI     A ++K        ML 
Sbjct: 435 NTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN 494

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
             +     T  A++  Y   G   + E+ +  +L  R+ +K D
Sbjct: 495 AXVKPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPD 535



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 4/237 (1%)

Query: 93   QILQHDGDWTKDHFWAV-IRFLKNSSRSRQI-PQVFDMWKNIEKSRINEFNSQKIIGMLC 150
            Q ++  G +   H + + I  L    R R +   V +M     K  ++ +NS  ++ +  
Sbjct: 908  QGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNS--VLKLYT 965

Query: 151  EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
              G  ++  + +Q ++   LKP  + YN++I  Y +  +  E L  ++EM+ + L P+ D
Sbjct: 966  GIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLD 1025

Query: 211  TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            TY  LI A+GK +M ++ +   + +    C  D   Y+++++ F  +G   + E     M
Sbjct: 1026 TYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVM 1085

Query: 271  LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
                +    +TM  ++ +Y   G  ++ EK    L     PL       + + Y+KN
Sbjct: 1086 KEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKN 1142



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           A+    E+    ++P +  YN++I   S+     EA+   N+M      P   TY+ +I 
Sbjct: 310 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 369

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
            YG+  M  E     K ++  G  PD +TYN L+  FA  G + +++   + M+      
Sbjct: 370 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 429

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
              T   I+  Y   G  D   + Y  + L+ R+P
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 464



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN+IIH Y K G+ + A    ++MK    SP + TY  LI + GK  M  E    +  M 
Sbjct: 434 YNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEML 493

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML---TKRMHLRSSTMVAILDAYMNFG 293
                P   T++ LI  +A AG     E T+  ML    K  HL  S M   LD  + F 
Sbjct: 494 NAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM---LDILLRFN 550

Query: 294 MLDKMEKFYKRLL 306
              K  K Y+ ++
Sbjct: 551 ESGKAMKLYQEMV 563



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           ++  L  +++     ++F   +    + +  +N+  ++G+    G   +       M   
Sbjct: 226 ILSVLGKANQEALAVEIFARAEAAXGNTVQVYNA--MMGVYARTGRFTKVQELLDLMRSR 283

Query: 169 ALKPSLEIYNSIIHGYSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
             +P L  +N++I+   K G    N A+  LNE++   + P   TY+ LI A  +    +
Sbjct: 284 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 343

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           E       M    C PD  TYN +I  +   G+ +     +K + +K     + T  ++L
Sbjct: 344 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 403

Query: 287 DAYMNFGMLDKMEKF 301
            A+   G +DK+++ 
Sbjct: 404 YAFAREGNVDKVKEI 418



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 138/329 (41%), Gaps = 11/329 (3%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVR 160
           T   F  V++++  SS  R + +V++ W N+      N      I+ +L +      AV 
Sbjct: 184 TPTDFCFVVKWVGQSSWQRAL-EVYE-WLNLRHWYSPNARMLATILSVLGKANQEALAVE 241

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-- 218
            F   E  A   ++++YN+++  Y++ G+F +    L+ M+     P   +++ LI A  
Sbjct: 242 IFARAEA-AXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARL 300

Query: 219 -YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             G       I++ L  ++  G  PD ITYN LI   +    L+     Y  M+  R   
Sbjct: 301 KSGTMVTNLAIEL-LNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQP 359

Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-RKLAEVYIKNYMFSRLDDL 336
              T  A++  Y   GM  +  + +K  L S+  L + +    L   + +     ++ ++
Sbjct: 360 DLWTYNAMISVYGRCGMSREAGRLFKD-LESKGFLPDAVTYNSLLYAFAREGNVDKVKEI 418

Query: 337 GDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            +D+     G+ E+ +   +  +     H     +  +M+ +    +  T  +++ +  K
Sbjct: 419 CEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGK 478

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
               K    ++SE+    VKP + T   L
Sbjct: 479 ANMIKEAAEVMSEMLNAXVKPTLRTFSAL 507



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 46/114 (40%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     II M  + G  + A + + +M+     P    Y  +I    K     EA   +
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           +EM    + P   T+  LI  Y K     E +     M   G  PDH+ Y++++
Sbjct: 490 SEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 543



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L +  +++EA     EM    +KP+L  ++++I GY+K GK  EA    + M    
Sbjct: 472 LIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSG 531

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + P    Y  ++    ++    +     + M L    PDH  Y ++++
Sbjct: 532 IKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLR 579



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 11/194 (5%)

Query: 122  IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
            I ++ DM   I KS I       ++      G + E  + +Q M+     P++ +Y  +I
Sbjct: 872  IQELQDMGFKISKSSIT-----LMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMI 926

Query: 182  HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               +K  +  +    ++EM+     P    ++ +++ Y     + +     ++++  G  
Sbjct: 927  GLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLK 986

Query: 242  PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR---MHLRSSTMVAILDAYMNFGMLDKM 298
            PD  TYN LI  + C    +R E     M   R   +  +  T  +++ A+    M+++ 
Sbjct: 987  PDEDTYNTLILMY-CRD--RRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQA 1043

Query: 299  EKFYKRLLNSRTPL 312
            E+ ++ LL+    L
Sbjct: 1044 EELFEGLLSKECKL 1057


>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
          Length = 601

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA      M+   + P + ++N+++ G+   G+F +A     EM+     P +
Sbjct: 206 CRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNA 265

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  L+Q  G     DE       M+  GC+PD +TY  L+  F  AG + +       
Sbjct: 266 VSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDV 325

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           M  + + + +   +    A+     L++  +  +R+   R P
Sbjct: 326 MAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCP 367



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ + +E+     N  +   ++  L   G ++EA+R F EM      P    Y +++ 
Sbjct: 249 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 308

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + K G+ ++   FL+ M    L   +  Y G   A+ K +  +E    ++ M+   C P
Sbjct: 309 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPP 368

Query: 243 DHITYNLLIQEFACA-GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           D   YN++I+  AC  G  K+    +  M T  +     T   ++   +  G+L +   +
Sbjct: 369 DLSIYNVVIR-LACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGY 427

Query: 302 YKRLLN 307
           +K ++ 
Sbjct: 428 FKDMVG 433



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 38/266 (14%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           SL  Y ++++G+ ++GK +EA   L  MK   ++P    ++ L+  +     +++     
Sbjct: 194 SLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELA 253

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M+  GC P+ ++Y  L+Q     G +      +  M  K     S T   ++ A+   
Sbjct: 254 REMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKA 313

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G + +  +F    + +R  L+ D     A VY+  ++            +   + +L  C
Sbjct: 314 GRISQGYEFLD--VMAREGLRVD-----AGVYLGFFV------------AHEKKEQLEEC 354

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           L L+                 M   +   +++  N+++    K+ + K    L +E+ T 
Sbjct: 355 LELMER---------------MRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETN 399

Query: 413 HVKPDIVTIGILYDARRIGFDGTGAL 438
            + P + T  I+      G  G G L
Sbjct: 400 ELSPGVDTFAIMV----TGLVGQGVL 421


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C EG + EA     +++    +P + +YN+++ GY++ GK  +A   L EMK++N  P +
Sbjct: 280 CREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNA 339

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            ++  LIQ++ K +  DE       M+  GC  D +TY  LI  F
Sbjct: 340 ASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGF 384



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E+    ++  LC+ G ++EA   F++M      P+L  + S+++G+ + GK  EA   L
Sbjct: 234 DEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLYGWCREGKIMEAKHVL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++KE    P    Y+ L+  Y +  KM D  D+  +M K++ C P+  ++ +LIQ F  
Sbjct: 293 VQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN-CGPNAASFTILIQSFCK 351

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
              +      +  M          T   ++  +  +G  DK
Sbjct: 352 TEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 392



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 2/197 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L   +++ ++   FD+   ++K     N  +   +I   C+   M+EA+R F EM+G  
Sbjct: 310 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 369

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            +  +  Y ++I G+ K G  ++A   L++M +    P   +Y  ++ A+ K +  +E  
Sbjct: 370 CEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECM 429

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             ++ M+  GC PD   YN +I+     G LK     +  M    ++    T + ++  +
Sbjct: 430 ELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGF 489

Query: 290 MNFGMLDKMEKFYKRLL 306
           ++ G L +   ++K ++
Sbjct: 490 LSQGCLVEACDYFKEMV 506



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N +N+  +I ++C+ G ++EAVR + EM+   L P L+ Y  ++HG+   G   EA  +
Sbjct: 444 LNIYNT--MIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDY 501

Query: 197 LNEMKEMNL--SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             EM E  L  +PQ  T   L  A  + +  +        M   GC  +   + + I   
Sbjct: 502 FKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHAL 561

Query: 255 ACAGLLK 261
              G +K
Sbjct: 562 FSNGHVK 568


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G + EA+     M     +P+   Y  I+H Y   G+ +EA   LN M    
Sbjct: 259 LISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASG 318

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
            +P + TY+ L++A  K   ++E+D  L+     G +PD ITY+  +     AG + +  
Sbjct: 319 FAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSF 378

Query: 265 GTYKSMLTKRMHLRSSTMVAILDA 288
                ML+  +     T+  +LD 
Sbjct: 379 ALVDKMLSNGLQPSEVTLNILLDG 402



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 2/204 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM-LCEEGLMEEAVRAFQE 164
           F  V   L ++SR      V D     +    +      ++G+  C     + A    + 
Sbjct: 185 FTTVAAALSSASRPGAALAVLDAMAA-DGVAPDAAACTVLVGVYACRLRRFDAAYEVVRW 243

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    + P +  Y+++I G    G+  EAL  L+ M E    P + TY  ++ AY     
Sbjct: 244 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 303

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    L  M   G +P   TYN+L++     G  + ++   +    K       T  +
Sbjct: 304 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 363

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNS 308
            +D     G +DK      ++L++
Sbjct: 364 YMDGLCKAGRIDKSFALVDKMLSN 387



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 1/167 (0%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEID 229
           +P    + ++    S   +   AL  L+ M    ++P +     L+  Y  + + +D   
Sbjct: 179 RPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAY 238

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
             ++ M  +G +PD +TY+ LI     AG +    G    ML +     + T   I+ AY
Sbjct: 239 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAY 298

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336
              G + + ++    ++ S           L E   K   F  +D L
Sbjct: 299 CTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDAL 345



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)

Query: 98  DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEE 157
           DG       WA  R L+ S+           W        N  N   ++  LC+E     
Sbjct: 401 DGVCRSSTAWAAKRLLECSAELG--------WDA------NVVNYNTVMRRLCDERRWLS 446

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
            V+ F +M    + P+   +N ++H   K+G+ ++AL  L   +         TY+ LI+
Sbjct: 447 VVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCLL---RSKEFVATVITYNTLIR 503

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                   +E+ + L  M   G +P+ ITY+L+I
Sbjct: 504 HLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVI 537


>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
 gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
          Length = 601

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA      M+   + P + ++N+++ G+   G+F +A     EM+     P +
Sbjct: 206 CRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNA 265

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  L+Q  G     DE       M+  GC+PD +TY  L+  F  AG + +       
Sbjct: 266 VSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDV 325

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           M  + + + +   +    A+     L++  +  +R+   R P
Sbjct: 326 MAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCP 367



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ + +E+     N  +   ++  L   G ++EA+R F EM      P    Y +++ 
Sbjct: 249 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 308

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + K G+ ++   FL+ M    L   +  Y G   A+ K +  +E    ++ M+   C P
Sbjct: 309 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPP 368

Query: 243 DHITYNLLIQEFACA-GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           D   YN++I+  AC  G  K+    +  M T  +     T   ++   +  G+L +   +
Sbjct: 369 DLSIYNVVIR-LACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGY 427

Query: 302 YKRLLN 307
           +K ++ 
Sbjct: 428 FKDMVG 433



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 38/266 (14%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           SL  Y ++++G+ ++GK +EA   L  MK   ++P    ++ L+  +     +++     
Sbjct: 194 SLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELA 253

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M+  GC P+ ++Y  L+Q     G +      +  M  K     S T   ++ A+   
Sbjct: 254 REMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKA 313

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G + +  +F    + +R  L+ D     A VY+  ++            +   + +L  C
Sbjct: 314 GRISQGYEFLD--VMAREGLRVD-----AGVYLGFFV------------AHEKKEQLEEC 354

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           L L+                 M   +   +++  N+++    K+ + K    L +E+ T 
Sbjct: 355 LELMER---------------MRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETN 399

Query: 413 HVKPDIVTIGILYDARRIGFDGTGAL 438
            + P + T  I+      G  G G L
Sbjct: 400 ELSPGVDTFAIMV----TGLVGQGVL 421


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F    +I  L + G ++ A+   QEME  +++P+L +Y+++I G  K G  ++AL   
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +++ E  +   + TY+ LI        + E+   L  M  +   PD  T+N+LI      
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G +   +G    M  +       T  A+++ Y +   + +  + + R++  +  L+ D++
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV--KRGLEPDVL 336

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL----RLLSHAC---LLSHRGIDSV 370
                V I  Y  +++ D    L   +    LV  +     L+   C    +SH  +  +
Sbjct: 337 N--YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISH--VKKL 392

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           + EM  +    +V T NI++ A  K         +L  +  + VKP+IVT   + D 
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 149/388 (38%), Gaps = 53/388 (13%)

Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
           M K  EK  I  +N+  ++   C    + EA   F  M    L+P +  YN +I GY K 
Sbjct: 291 MSKRGEKPDIVTYNA--LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
              +EA++   E+   NL P   +Y+ LI           +   L  M      PD +TY
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           N+LI      G +    G    M+ K +     T  A++D Y     ++  +  + R++ 
Sbjct: 409 NILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           S   L+ D++     V I  Y                 +TE+V        A +L     
Sbjct: 469 SG--LEPDILNY--NVLINGYC----------------KTEMV------DEAIVL----- 497

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
               +EM    +  ++ + N ++     +    H++ LL E+      PD++T  IL DA
Sbjct: 498 ---FKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDA 554

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVE-----INTDPLVLAVYGKGHFLRYCEEVYSSLEPY 482
               F  T   +  K I    + VE       T+  ++    KG  L+  E+    L  +
Sbjct: 555 ----FCKTQPFD--KAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH 608

Query: 483 SREKKRWTYQNLIDLVIKHNGKNLDGTF 510
                  TY  LI+ + K      DG+F
Sbjct: 609 GCSPNVQTYTILINALCK------DGSF 630



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 38/324 (11%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVR 160
           T   + ++I  L NS R   + ++ D M  + +   +  +N   +I  LC+EG + EA+ 
Sbjct: 369 TIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI--LIDALCKEGRILEALG 426

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
               M    +KP++  YN+++ GY      N A    N M +  L P    Y+ LI  Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K +M DE  +  K M+     PD  +YN LI      G +  ++     M          
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           T   +LDA+      DK    +++++    P          + Y  + +   +D+L    
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWP----------DFYTNHAI---VDNLCKGE 593

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFK 400
             ++    L     LL H C                     NV T  I++ A  K   F 
Sbjct: 594 KLKMAEDALK---HLLMHGC-------------------SPNVQTYTILINALCKDGSFG 631

Query: 401 HLRVLLSELPTRHVKPDIVTIGIL 424
              +LLS++      PD +T  I+
Sbjct: 632 EAMLLLSKMEDNDRPPDAITFEII 655



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           D F     F K  S  RQI  V  +W +        + +  I+  LC+   ++ A  A +
Sbjct: 553 DAFCKTQPFDKAISLFRQI--VEGIWPDF-------YTNHAIVDNLCKGEKLKMAEDALK 603

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
            +      P+++ Y  +I+   K G F EA+L L++M++ +  P + T++ +I
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656


>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
 gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 531

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 86  KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQ 143
           +K    LQ++Q DG    +  +  +  ++  SR++Q      M   ++++ I     +  
Sbjct: 336 EKARAVLQLMQADGCQCDEITYTSV--MEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYG 393

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
            +I   C  G + +A R  + M+    KP++EIYN +I GY+     ++A      M++ 
Sbjct: 394 VLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDC 453

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            L P + T++ LI  Y K +   + + C   M+  GC P+ +TY +L++ +
Sbjct: 454 GLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAY 504



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 37/310 (11%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++G M +A+  F+  EG  LKP +  Y ++I G+ K+  +N+     + M+     P   
Sbjct: 157 KDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQRNRCPPDLK 216

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
               LI  YG   +    +  ++  +  G  PD I Y  L+  +A  GL +  E T   M
Sbjct: 217 LCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDM 276

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEK---------------FYKRLLN----SRTP 311
           L   + +      A++ AY   G+ D + K                Y  L+N    +  P
Sbjct: 277 LDVGI-VDDRPYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAP 335

Query: 312 LKEDLVRKLAEV------------YIKNYMFSRLDDLGDDLASRIGRTEL----VWCLRL 355
            K   V +L +              ++ Y  ++   + + +   + R  +    V    L
Sbjct: 336 EKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVL 395

Query: 356 LSHACLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
           +S  C     G  + ++R M++AK +  V   N+++  Y   K       +   +    +
Sbjct: 396 ISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGL 455

Query: 415 KPDIVTIGIL 424
           +PD VT   L
Sbjct: 456 RPDAVTFNTL 465



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           ++ LM E++    EM+   ++P    Y  +I  Y + G+  +A   L  M+     P  +
Sbjct: 368 KQPLMAESM--MGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVE 425

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
            Y+ +I  Y   KM  + +   + M+  G  PD +T+N LI  +  +   K+ E  Y  M
Sbjct: 426 IYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRM 485

Query: 271 LTKRMHLRSSTMVAILDAYMNF 292
                   + T   +L AY ++
Sbjct: 486 QQLGCKPNAVTYKILLKAYTDY 507



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 108/296 (36%), Gaps = 51/296 (17%)

Query: 151 EEGLMEEAVRAFQEMEGFAL---KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           +EGL EEA +   +M    +   +P    Y +++  Y K G  +     L  MK   +  
Sbjct: 262 QEGLWEEAEKTLSDMLDVGIVDDRP----YAALVAAYGKAGLTDNVNKILETMKASGVEA 317

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
            +  Y+ LI  + K +  ++    L++M+ DGC  D ITY  +++ ++        E   
Sbjct: 318 STTLYNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMM 377

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M    +     +   ++ AY   G L   E+  + + N++        +   E+Y  N
Sbjct: 378 GEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAK-------CKPTVEIY--N 428

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
            M S                          +A        + + + M+   +R +  T N
Sbjct: 429 MMIS-------------------------GYASAKMRSQAERMFQTMQDCGLRPDAVTFN 463

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL----------YDARRIGFD 433
            ++  Y+K +  K        +     KP+ VT  IL           DA RI  D
Sbjct: 464 TLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAYTDYNNSIDAERIRLD 519



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 12/218 (5%)

Query: 128 MWKNIEKSR--------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
           +W+  EK+         +++     ++    + GL +   +  + M+   ++ S  +YN+
Sbjct: 265 LWEEAEKTLSDMLDVGIVDDRPYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNT 324

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I+ +SK     +A   L  M+         TY  +++AY + K     +  +  MK  G
Sbjct: 325 LINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAG 384

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
             P  ++Y +LI  +  AG L   E   ++M   +          ++  Y +  M  + E
Sbjct: 385 IQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAE 444

Query: 300 KFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDD 335
           + ++ + +    L+ D V    L  +YIK+    + +D
Sbjct: 445 RMFQTMQDCG--LRPDAVTFNTLISMYIKSRKRKQAED 480


>gi|255550123|ref|XP_002516112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544598|gb|EEF46114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 461

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC  G  +EAV  F+EM    +K  ++ Y  +I+ Y K+ K NEA+  L EMK   
Sbjct: 237 ILKGLCYAGKSDEAVNYFKEMIRKGMKCDVKAYAVVINEYCKMKKPNEAIALLKEMKAKG 296

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA-GLLKRM 263
           ++P   +++ +IQ   K    D     LK M+  GC P+ I+YN++I     A G ++ +
Sbjct: 297 INPSVSSFNAVIQILMKLGEPDAAIFLLKQMQGMGCRPNFISYNIVIGGLCGAKGRMQNV 356

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           +    +ML   + + ++   +++  Y   G
Sbjct: 357 KELLHNMLCSGLAVDATMYSSLVKGYCEDG 386


>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 875

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 159/392 (40%), Gaps = 60/392 (15%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA   F EM    + P+   +N++IH     G+  E  L + +M+E+   P + TY
Sbjct: 344 GQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTY 403

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI  + K+   +      K MK D   PD ++Y  L+  F+   ++   E     M  
Sbjct: 404 NILIFIHAKHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDE 463

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-----------------LNSRTPLKED 315
           K + +   T  A+   Y+  GML+K   ++ R                     R  +KE 
Sbjct: 464 KGIEIDEYTQSALTRMYIEAGMLEKSWLWFWRFHLAGNMSSECYSANIDAYGERGHVKE- 522

Query: 316 LVRKLA-------------EVYIKNYMFS----RLDDLGDDLAS------RIGRTELVWC 352
             R  A              V IK Y F     +  DL D + S      +   + LV  
Sbjct: 523 AARVFACRLEQNKLTVLEFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLV-- 580

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
            ++L+ A L         +++M+ A +  +      ++ +++K+   +    +  E+   
Sbjct: 581 -QILASADLPDK--AKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGF 637

Query: 413 HVKPDIVTIGILYDARRIGFDGTGA-------LEMWKRIGFLFKTVEINTDPLVLAVYGK 465
            VKPDI+  G+L +A    F  +G        ++  K  G    TV  N+   ++ +Y K
Sbjct: 638 DVKPDIIVYGVLINA----FADSGCVKEAISYIDAMKGAGLPGNTVIYNS---LIKLYTK 690

Query: 466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
             +LR  +E Y  L+      + ++   +IDL
Sbjct: 691 VGYLREAQETYKLLQSSDVGPETYSSNCMIDL 722



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I    + G +E A   ++EM GF +KP + +Y  +I+ ++  G   EA+ +++ MK   
Sbjct: 614 VISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGCVKEAISYIDAMKGAG 673

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L   +  Y+ LI+ Y K     E     K+++     P+  + N +I  ++   ++K  E
Sbjct: 674 LPGNTVIYNSLIKLYTKVGYLREAQETYKLLQSSDVGPETYSSNCMIDLYSEQSMVKPAE 733

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++SM  ++      T   +L  Y   G  ++  +  K++
Sbjct: 734 EIFESM-KRKGDANEFTYAMMLCMYKRLGWFEQAIQIAKQM 773



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++ +L    L ++A    ++M+   L      Y ++I  + K+GK   A     EM   +
Sbjct: 579 LVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFD 638

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y  LI A+       E    +  MK  G   + + YN LI+ +   G L+  +
Sbjct: 639 VKPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIKLYTKVGYLREAQ 698

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            TYK + +  +   + +   ++D Y    M+   E+ ++ +
Sbjct: 699 ETYKLLQSSDVGPETYSSNCMIDLYSEQSMVKPAEEIFESM 739



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 160 RAFQEMEGFALKPSLEI----YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           RA +  E F  +   E+    YN +I    K  ++       NEM    +SP + TY  L
Sbjct: 186 RAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQWRYLECLCNEMSFKRISPINSTYGTL 245

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           I  Y K  + ++    L+ M   G  PD +T  +++Q +  AG  ++ E  +K
Sbjct: 246 IDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEEFFK 298



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 28/236 (11%)

Query: 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAF 162
           H+  +IR L  + + R +  + +    +   RI+  NS    +I +  + GL E+A+   
Sbjct: 206 HYNIMIRILGKAKQWRYLECLCN---EMSFKRISPINSTYGTLIDVYSKGGLREKALDWL 262

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM---------------------K 201
           ++M    ++P       ++  Y K G+F +A  F  +                      +
Sbjct: 263 EKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSLREALRHKVTGKASVRVENER 322

Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           +M++S  S TY+ +I  YGK     E       M      P  +T+N +I      G L+
Sbjct: 323 QMDVSLSSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLE 382

Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
            +    + M   R    + T   ++  +     ++    ++KR+   +  L+ DLV
Sbjct: 383 EVALLMQKMEELRCPPDTRTYNILIFIHAKHNDINMAASYFKRM--KKDQLQPDLV 436


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
           +++EA+  F+EM    + P + IYNS+I G  K G+   AL F+ EM      P   TY+
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYN 345

Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
            L+ A  K    D+    L  +K  G  P   TYN+LI     +G LK  E  ++ +L K
Sbjct: 346 SLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVK 405

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
             +    T  A++  +   G+ D+      ++ +S
Sbjct: 406 GYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDS 440



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 127/295 (43%), Gaps = 26/295 (8%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N+ +   +I  LC+ G    A+   + ++G  ++P + +YN+II G  K    N+A  
Sbjct: 114 KLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFN 173

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              EM    + P   TY+ LI       ++ D I +  KM+ L+  +P   T+++LI  F
Sbjct: 174 LYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMI-LEDINPTVYTFSILIDAF 232

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G +K  +  +  M+ + +     T  +++D +    ++ K     K + N+   + +
Sbjct: 233 CKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKA----KSIFNTMIKMVD 288

Query: 315 DLVRKLAEVYIKNYMFSRL--DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
           + +    E++ K      +  + L D L  + GRT   + L+ +                
Sbjct: 289 EAMNLFEEMHFKQIYPDMVIYNSLIDGLC-KSGRTP--YALKFIG--------------- 330

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           EM       ++ T N +L A  K         LL++L  + ++P + T  IL + 
Sbjct: 331 EMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILING 385



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 17/289 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC++ L+ +A   + EM    + PS+  YN++I G   + +  +A+  L++M   +
Sbjct: 158 IIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILED 217

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI A+ K     E      +M  +   P+ +TYN L+       ++K+ +
Sbjct: 218 INPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAK 277

Query: 265 GTYKSM---------LTKRMHLRS--STMV---AILDAYMNFGMLDKMEKFYKRLLNSRT 310
             + +M         L + MH +     MV   +++D     G      KF   +     
Sbjct: 278 SIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQ 337

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS- 369
           P        L +   KNY   +  +L   L  + G    V    +L +    S R  D+ 
Sbjct: 338 PPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQ-GIQPSVCTYNILINGLCKSGRLKDAE 396

Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
            V  ++       +V T N ++  + K   F     ++S++      PD
Sbjct: 397 KVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPD 445



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 57/115 (49%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++  LC+   +++A+    +++   ++PS+  YN +I+G  K G+  +A     +
Sbjct: 342 FTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFED 401

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +     +    TY+ +I+ + K  ++DE    +  MK  GCSPD     ++I+  
Sbjct: 402 LLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSL 456



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 73/375 (19%), Positives = 151/375 (40%), Gaps = 28/375 (7%)

Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F ++ NI K     +      +I  LC +G + +A+    ++     K +   Y ++I+G
Sbjct: 67  FSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLING 126

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSP 242
             K+G+   AL FL  +    + P    Y+ +I    K K+  D  ++  +M+    C P
Sbjct: 127 LCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRIC-P 185

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
             +TYN LI        LK   G    M+ + ++    T   ++DA+   G + + +  +
Sbjct: 186 SVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVF 245

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW--CLRLLSHAC 360
             +      +KED+   +         ++ L D G  L + + + + ++   ++++  A 
Sbjct: 246 AVM------MKEDVKPNIVT-------YNSLMD-GHHLVNVVKKAKSIFNTMIKMVDEAM 291

Query: 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
                   ++  EM   ++  ++   N ++    K     +    + E+  R   PDI T
Sbjct: 292 --------NLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFT 343

Query: 421 IGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480
              L DA    +    A+E+  ++        + T  +++    K   L+  E+V+  L 
Sbjct: 344 YNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL 403

Query: 481 PYSREKKRWTYQNLI 495
                   +TY  +I
Sbjct: 404 VKGYNTDVYTYNAMI 418


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R F++M+   + P +  YN++I+GY+++ K  EA  +  EMKE  + P   TY
Sbjct: 164 GKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTY 223

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ Y      D+    ++ MK  G  P+ ITY+ L+     A  +       K M+ 
Sbjct: 224 TTLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVD 283

Query: 273 KRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           K +    +S  + ++ +    G LD      K ++    P +      L E Y K   + 
Sbjct: 284 KYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYD 343

Query: 332 RLDDLGDDLASR 343
           +   L D L  +
Sbjct: 344 KAVKLLDKLIEK 355



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 70/144 (48%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+++E+V+ FQ+ME   ++ +++ Y+++    S+ G++  +  + N+M    + P   T+
Sbjct: 94  GIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTF 153

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI  +      +  +   + MK    +PD ITYN +I  +     ++  E  +  M  
Sbjct: 154 NVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKE 213

Query: 273 KRMHLRSSTMVAILDAYMNFGMLD 296
           +++     T   ++  Y +   +D
Sbjct: 214 RKIDPTVVTYTTLIKGYASVDRVD 237



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 125/322 (38%), Gaps = 53/322 (16%)

Query: 104 DH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEA 158
           DH   + V+   KN+  + Q    F  W  +E+S + E N +   KII +L     +  A
Sbjct: 11  DHELVYNVLHGAKNAEHALQ----FFRW--VERSNLLEHNREIHLKIIEILGRASKLNHA 64

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
                +M    L+   +++  +I  Y K G   E++    +M+E+ +     +YD L + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             +   Y         M  +G  P   T+N+LI  F  +G ++     ++ M ++ +   
Sbjct: 125 ISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPD 184

Query: 279 SSTMVAILDAYMNFGMLDKMEKFY----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
             T   +++ Y     +++ EK++    +R ++        L++  A V        R+D
Sbjct: 185 VITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASV-------DRVD 237

Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
           D                 LRL               V EM+   ++ N  T + +L    
Sbjct: 238 D----------------ALRL---------------VEEMKGLGIKPNAITYSTLLPGLC 266

Query: 395 KMKDFKHLRVLLSELPTRHVKP 416
             +     R +L E+  ++V P
Sbjct: 267 NAEKMSEARSILKEMVDKYVAP 288


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I  LC EG + EA     +M G  L   +  Y +I++G  K+G    AL  L++
Sbjct: 13  FNT--LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 70

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M+E ++ P    Y  +I    K   + +       M   G +P+  TYN +I  F   G 
Sbjct: 71  MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 130

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
               +   + M+ + ++    T  A++ A +  G L + EK    +L+            
Sbjct: 131 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 190

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMES 376
           +   + K+  F     + D +AS     ++V    ++   C    + +D    ++RE+  
Sbjct: 191 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYC--RAKRVDEGMQLLREISR 244

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
             +  N TT N ++  + ++ +    + L  E+ +  V PD +T  IL            
Sbjct: 245 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 304

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
           ALE+++ I      ++++T    + ++G  KG  +    +++ SL  +  E    TY  +
Sbjct: 305 ALELFEVIQ--MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 362

Query: 495 I 495
           I
Sbjct: 363 I 363



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I   C  G   +A R  ++M    + P +  +N++I    K GK  EA    
Sbjct: 114 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 173

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM    + P + TY+ +I  + K+  +D+      +M     SPD +T+N +I  +  A
Sbjct: 174 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRA 229

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              KR++        + M L                    + +  +R L + T     L+
Sbjct: 230 ---KRVD--------EGMQL--------------------LREISRRGLVANTTTYNTLI 258

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES- 376
               EV   N       DL  ++ S     + + C  LL   C   +  ++  +   E  
Sbjct: 259 HGFCEVDNLN----AAQDLFQEMISHGVCPDTITCNILLYGFC--ENEKLEEALELFEVI 312

Query: 377 --AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
             +K+  +    NII+    K         L   LP   V+PD+ T    Y+    GF G
Sbjct: 313 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT----YNVMISGFCG 368

Query: 435 TGAL 438
             A+
Sbjct: 369 KSAI 372



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            CE   +EEA+  F+ ++   +      YN IIHG  K  K +EA      +    + P 
Sbjct: 296 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 355

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             TY+ +I  +       + ++    MK +G  PD+ TYN LI+    AG + +
Sbjct: 356 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 409



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 118 RSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
            + ++ +  ++++ I+ S+I+        II  +C+   ++EA   F  +    ++P ++
Sbjct: 298 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 357

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN +I G+      ++A +  ++MK+    P + TY+ LI+   K    D+    +  M
Sbjct: 358 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 417

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + +G S D  T   ++ +    G   R++ ++  ML+
Sbjct: 418 RSNGFSGDAFTIK-MVADLITDG---RLDKSFSDMLS 450



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 2/182 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R++++ +   + + I +  +  N      +I   CE   +  A   FQEM    + P   
Sbjct: 228 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 287

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             N +++G+ +  K  EAL     ++   +   +  Y+ +I    K    DE       +
Sbjct: 288 TCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSL 347

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
            + G  PD  TYN++I  F     +      +  M        +ST   ++   +  G +
Sbjct: 348 PIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEI 407

Query: 296 DK 297
           DK
Sbjct: 408 DK 409


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C+EG ++EA   F  M    +KP++  YNS+++GY  + + N+A    N M ++ 
Sbjct: 285 LVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIG 344

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   +Y  +I  + K KM DE     + M      PD +TYN LI      GL K   
Sbjct: 345 VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLID-----GLCKSGR 399

Query: 265 GTYKSMLTKRMHLRSS-----TMVAILDAYMNFGMLDKMEKFYKRL 305
            +Y   L   MH R       T  ++LDA      +DK  +   +L
Sbjct: 400 ISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKL 445



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+  +++EA++ F+EM    + P +  YNS+I G  K G+ + AL  + EM +  
Sbjct: 355 MISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG 414

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ L+ A  K    D+    L  +K     P   TYN+LI     +G LK  +
Sbjct: 415 QPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQ 474

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             ++ +L    ++   T   ++  +   G +
Sbjct: 475 KVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 14/323 (4%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N+ + + +I  LC+ G  + A+   + ++G  ++  + +YN+II G  K    N+A  
Sbjct: 171 QLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFD 230

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           F +EM    + P   TY+ LI      G+ K  D I +  KM+ L+  +P   T+++L+ 
Sbjct: 231 FYSEMVAKRICPTVVTYNTLICGLCIMGQLK--DAIGLLHKMI-LENINPTVYTFSILVD 287

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
            F   G +K  +  +  M+ K +     T  ++++ Y     ++K E  +  +       
Sbjct: 288 AFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAP 347

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVV 371
                  +   + K  M      L +++  +    ++V    L+   C          ++
Sbjct: 348 DVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLI 407

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
            EM       N+ T N +L A  K         LL++L   +++P + T  IL +    G
Sbjct: 408 GEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILIN----G 463

Query: 432 FDGTGALEMWKRIGFLFKTVEIN 454
              +G L+  +++   F+ V +N
Sbjct: 464 LCKSGRLKDAQKV---FEDVLVN 483



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 2/213 (0%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + + +   FD +  +   RI         +I  LC  G +++A+    +M    + P++ 
Sbjct: 221 KDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVY 280

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            ++ ++  + K GK  EA      M + ++ P   TY+ L+  Y      ++ +     M
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
              G +PD  +Y+++I  F    ++      ++ M  K++     T  +++D     G +
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRI 400

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
               K    + +   P        L +   KN+
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNH 433



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 149/379 (39%), Gaps = 48/379 (12%)

Query: 126 FDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F ++ NI K     +      +I  LC +G + +A+    ++     + +   Y ++I+G
Sbjct: 124 FSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLING 183

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSP 242
             K+G+   AL  L  +    +      Y+ +I    K K+  D  D   +M+    C P
Sbjct: 184 LCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRIC-P 242

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
             +TYN LI      G LK   G    M+ + ++    T   ++DA+             
Sbjct: 243 TVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAF------------- 289

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
                     KE  V++   V++              +  +  +  +V    L++  CL+
Sbjct: 290 ---------CKEGKVKEAKNVFVV-------------MMKKDVKPNIVTYNSLMNGYCLV 327

Query: 363 SH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
           +     +S+   M    V  +V + +I++  + K+K       L  E+  + + PD+VT 
Sbjct: 328 NEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTY 387

Query: 422 GILYD----ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
             L D    + RI +    AL++   +    +   I T   +L    K H +    E+ +
Sbjct: 388 NSLIDGLCKSGRISY----ALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLT 443

Query: 478 SLEPYSREKKRWTYQNLID 496
            L+ ++ +    TY  LI+
Sbjct: 444 KLKDHNIQPSVCTYNILIN 462


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 20/330 (6%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +++ F    ++ ML ++ L++EAV  F+E       P +  +N +I G  +IG+ ++A  
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFE 235

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI----DMCLKMMKLDGCSPDHITYNLLI 251
           F   M      P   +Y+ LI  + +    +EI    D+  + M + G SPD ITY  +I
Sbjct: 236 FFQNMGNFGCFPDIVSYNTLINGFCR---VNEISKGHDLLKEDMLIKGVSPDVITYTSII 292

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRT 310
             +   G +K     +  M++  +     T   ++D +   G M   M  + K LL    
Sbjct: 293 SGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL 352

Query: 311 PLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGI 367
           P   D+V    L + Y +    ++   L +++  R     +     L++  C  +  R  
Sbjct: 353 P---DVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            + +R ++S++V       N ++  + K         +++E+  +  +PD +T  IL   
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI-- 467

Query: 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
             IG    G   M + I   +K +EIN  P
Sbjct: 468 --IGNCMKG--RMVEAISTFYKMIEINCVP 493



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C EG + + ++ ++EM+   L P++  Y  +I+   K  +  EA  FL  +K   
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P+   Y+ +I  + K    DE +  +  M+   C PD IT+ +LI      G +    
Sbjct: 421 VVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAI 480

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVRKL 320
            T+  M+         T+ +++   +  GM ++  +  +  L       + L   L RK 
Sbjct: 481 STFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPLTRKS 540

Query: 321 AEVYI 325
           + V +
Sbjct: 541 SRVPV 545



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/349 (18%), Positives = 134/349 (38%), Gaps = 35/349 (10%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ GL + A   F  M    + P   I   ++  Y+++GK + A  FLNE+    +   
Sbjct: 119 LCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVS 178

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ L+    K  + DE  +  +        PD  ++N+LI+     G + +    ++
Sbjct: 179 PFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ 238

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
           +M                    NFG    +   Y  L+N    + E              
Sbjct: 239 NM-------------------GNFGCFPDIVS-YNTLINGFCRVNE-------------- 264

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTAN 387
           +    D L +D+  +    +++    ++S  C L   +    +  EM S+ ++ N  T N
Sbjct: 265 ISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFN 324

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447
           +++  + K+ + +   V+  ++      PD+VT   L D      +    L++W+ +   
Sbjct: 325 VLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384

Query: 448 FKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             +  + T  +++    K + +R        L+      K + Y  +ID
Sbjct: 385 NLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVID 433



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 30/338 (8%)

Query: 183 GYSKIGKFNEALLFLN--EMKEMNLSPQS--DTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +  I +F++ LL L   E    +LS     +TYD L++   K  + D   +    M+ D
Sbjct: 79  AFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSD 138

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK- 297
           G  PD     LL+  +A  G L   +     +    + +       +L+  +   ++D+ 
Sbjct: 139 GILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198

Query: 298 -------MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
                  +E ++   + S   L   L R + E+      F  + + G          ++V
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCR-IGEIDKAFEFFQNMGNFG-------CFPDIV 250

Query: 351 WCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
               L++  C ++   +G D +  +M    V  +V T   I+  Y K+ D K    L  E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTG----ALEMWKRIGFLFKTVEINTDPLVLAVYG 464
           + +  +KP+  T  +L D    GF   G    A+ M++++  L    ++ T   ++  Y 
Sbjct: 311 MVSSGIKPNDFTFNVLID----GFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYC 366

Query: 465 KGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           +   +    +++  ++  +     +TY  LI+ + K N
Sbjct: 367 REGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKEN 404


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
            K+IG LC+   +E+A   F+EM+   + PS+  Y  +I  + K G   +A  + +EM  
Sbjct: 457 SKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLR 516

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            N +P   TY  LI AY K +   + +   +MM L+G  P+ +TY  LI     AG + +
Sbjct: 517 DNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDK 576

Query: 263 MEGTYKSM 270
               Y  M
Sbjct: 577 ACQIYARM 584



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 3/236 (1%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A++  L  ++R  +  ++ D   ++     N+     +I   C+ G +E A   F +M
Sbjct: 612 YGALVDGLCKANRVEEAHELLDTM-SVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKM 670

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
                 P+L  Y+S+I+   K  + +  L  L++M E + +P    Y  +I    K    
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT 730

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           +E    +  M+  GC P+ ITY  +I  F   G +++    Y+ M +K       T   +
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS--RLDDLGDD 339
           ++   + G+LD+  +    +  +  P      RK+ E + + ++ S   LD+L ++
Sbjct: 791 INHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSEN 846



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+ N       LC  G  ++A     EM      P    Y+ +I       K  +A L 
Sbjct: 416 LNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLL 475

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             EMK+  + P   TY  LI ++ K  +  +       M  D C+P+ +TY  LI  +  
Sbjct: 476 FEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLK 535

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           A  +      ++ ML +       T  A++D +   G +DK  + Y R+
Sbjct: 536 ARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARM 584



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 142/357 (39%), Gaps = 66/357 (18%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
           VI FL ++S+   + + F +++ ++K+ I  + +    +I   C+ GL+++A   F EM 
Sbjct: 459 VIGFLCDASK---VEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEML 515

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL----SPQSDTYDGLIQAYGKY 222
                P++  Y S+IH Y K  K  +A    N++ EM L     P   TY  LI  + K 
Sbjct: 516 RDNCTPNVVTYTSLIHAYLKARKVFDA----NKLFEMMLLEGSKPNVVTYTALIDGHCKA 571

Query: 223 KMYD----------------EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
              D                +IDM  K+   D  +P+ ITY  L+     A  ++     
Sbjct: 572 GQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHEL 631

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF---------------YKRLLNSRTP 311
             +M             A++D +   G L+  ++                Y  L+NS   
Sbjct: 632 LDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFK 691

Query: 312 LKE-DLVRKLAEVYIKNYMFSRL---DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
            K  DLV K+    ++N     +    D+ D L  ++G+TE  + L L            
Sbjct: 692 EKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLC-KVGKTEEAYRLML------------ 738

Query: 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
                +ME      NV T   ++  + K+   +    L  ++ ++   P+ +T  +L
Sbjct: 739 -----KMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +++  LCE  L +EA+     M   +  P++  Y  ++ G    G+       L+ M   
Sbjct: 277 RMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTE 336

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI------QEFACA 257
              P  + ++ L+ AY K + Y       K M   GC P ++ YN+ I      +E   +
Sbjct: 337 GCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGS 396

Query: 258 GLLKRMEGTYKSML 271
            LL+  E  Y  ML
Sbjct: 397 DLLELAEKAYSEML 410



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 146 IGMLCE------EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           IG +C         L+E A +A+ EM    +  +    ++        GKF++A   + E
Sbjct: 384 IGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICE 443

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P   TY  +I         ++  +  + MK +G  P   TY +LI  F  AGL
Sbjct: 444 MMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGL 503

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           +++    +  ML         T  +++ AY+    +    K ++ +L
Sbjct: 504 IQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMML 550



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   +A+   ++ E     P    YN ++ G  +   F EA+  L+ M+ ++  P 
Sbjct: 250 LCKAGRCGDALSLLEKEE---FVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPN 306

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY  L+               L MM  +GC P+   +N L+  +      K  + +Y 
Sbjct: 307 VVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYC-----KSRDYSYA 361

Query: 269 SMLTKRM 275
             L K+M
Sbjct: 362 YKLFKKM 368


>gi|302815817|ref|XP_002989589.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
 gi|300142767|gb|EFJ09465.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
          Length = 368

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  + + G++E+A +  + ME    KP   IY  +I+G+ K+G F  A++ L  
Sbjct: 34  FTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGR 93

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
           MKE   +P +  +D +I    K   +DE  + LK+    GC PD +TY
Sbjct: 94  MKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTY 141



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEME-----------GFALKPSLEIYNSIIHGYSKIGKFN 191
            +++  LC+ G +E A +  +++            G   KP + +Y+ +I     +G  +
Sbjct: 177 SRLMKCLCKTGKVEAACQLLEDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTD 236

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           E  + +  M+E  + P +  Y   + A+ +    D+    L++M   GC PD I+YN L+
Sbjct: 237 EGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVISYNTLL 296

Query: 252 QEFACAG 258
                AG
Sbjct: 297 FALCSAG 303



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 41/103 (39%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
            C    +++A R  + M      P +  YN+++      G+  EA      M E  + P 
Sbjct: 264 FCRSARLDDACRLLEIMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPN 323

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             TY  LI+A    K  +        MKL  C PD  TY  LI
Sbjct: 324 VFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALI 366



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%)

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           YN +I G  K  + +EAL     M+  N+     TY+ +I+   K  M ++ +  LK M+
Sbjct: 1   YNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTME 60

Query: 237 LDGCSPDHITYNLLIQEFA 255
              C PD   Y  +I  F 
Sbjct: 61  ESDCKPDKFIYTRVINGFC 79



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G+ +E     + ME   +KP   +Y   ++ + +  + ++A   L  M E  
Sbjct: 225 VIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVEAG 284

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   +Y+ L+ A       +E     ++M   G  P+  TY  LI+        K++E
Sbjct: 285 CYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCST---KKLE 341

Query: 265 GT 266
           G 
Sbjct: 342 GA 343



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S+   + Q   + K +E+S  + ++F   ++I   C+ G  + AV     M+     P  
Sbjct: 44  SKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDA 103

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
            +++ II G  K  KF+EAL+ L    E    P   TY  ++      + ++     L++
Sbjct: 104 VVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRVLEL 163

Query: 235 MKLDGCSPDHITYNLLIQ 252
            +   C   ++ Y+ L++
Sbjct: 164 AQERKCPATNLLYSRLMK 181


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 112/280 (40%), Gaps = 30/280 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           +I   C  G   EA +  QEM E   + P +  YN++I+ + K GKF EA    +EM   
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            + P + TY  +I  + K    D  +    +M   GCSPD IT+N LI  +  A   KR+
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRA---KRV 377

Query: 264 EGTYK---SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
           +   K    M    +   + T   ++  +   G L+  +   + +++S            
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGV---------C 428

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380
             V   N +   L D G          +L   L +   A   S   ID+         V 
Sbjct: 429 PNVVTCNTLLDGLCDNG----------KLKDALEMFK-AMQKSKMDIDA---SHPFNGVE 474

Query: 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +V T NI++   +    F     L  E+P R + PD +T
Sbjct: 475 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 514



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 158/403 (39%), Gaps = 60/403 (14%)

Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
           +I +  D++  + K  +  F +  ++  LC EG + EAV     M    L+P+   Y +I
Sbjct: 163 RISEALDLFHQMCKPNVVTFTT--LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTI 220

Query: 181 IHGYSKIGKFNEALLFLNEMKEMN-LSPQS-----DTYDGLIQAYGKYKMYDEIDMCLK- 233
           + G  K+G    AL  L +M+E++ + P       +    +I  +     + E    L+ 
Sbjct: 221 VDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQE 280

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           M++    SPD +TYN LI  F   G     E  Y  ML + +   + T  +++D +    
Sbjct: 281 MLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQN 340

Query: 294 MLDKMEK-FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRTELVW 351
            LD  E  FY       +P   D++       I  Y  + R+DD                
Sbjct: 341 RLDAAEHMFYLMATKGCSP---DIIT--FNTLIAGYCRAKRVDD---------------- 379

Query: 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
                         GI  ++ EM  A +  N  T   ++  + ++ D    + LL E+ +
Sbjct: 380 --------------GI-KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVS 424

Query: 412 RHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---------GFLFKTVEINTDP---LV 459
             V P++VT   L D          ALEM+K +            F  VE +      L+
Sbjct: 425 SGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILI 484

Query: 460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
             +  +G FL   EE+Y  +          TY ++I  + K +
Sbjct: 485 SGLINEGKFLE-AEELYEEMPHRGIVPDTITYNSVIHGLCKQS 526



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 137/359 (38%), Gaps = 18/359 (5%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVR 160
           W  +    +I    +S R  +  Q+       +K   +      +I    +EG   EA  
Sbjct: 253 WPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEE 312

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            + EM    + PS   Y+S+I G+ K  + + A      M     SP   T++ LI  Y 
Sbjct: 313 LYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYC 372

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           + K  D+    L  M   G   + ITY  LI  F   G L   +   + M++  +     
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV 432

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-----------M 329
           T   +LD   + G L    + +K +  S+  +         E  ++ Y            
Sbjct: 433 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGK 492

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTA 386
           F   ++L +++  R    + +    ++   C  S   +D   +    M S     NV T 
Sbjct: 493 FLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSR--LDEATQMFDSMGSKSFSPNVVTF 550

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-IGILYDARRIGFDGTGALEMWKRI 444
             ++  Y K         L  E+  R +  + +T I +++  R++G +  GAL++++ +
Sbjct: 551 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVG-NINGALDIFQEM 608



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + +VI  L   SR  +  Q+FD   +   S  N      +I   C+ G +++ +  F EM
Sbjct: 515 YNSVIHGLCKQSRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEM 573

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
               +  +   Y ++IHG+ K+G  N AL    EM    + P + T
Sbjct: 574 GRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTIT 619


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R   + +  ++W ++    I  N      +I   CE+G +E+A     EM      P++ 
Sbjct: 449 RKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIR 508

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YNSII GY + G   +   FL +M++ N+ P   T++ LI  Y K +          +M
Sbjct: 509 TYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           + +   PD +TYN++I  F+  G ++     +K M    +     T +++++ ++  G
Sbjct: 569 EKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 7/163 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG  C  G M EA+R   EM GF   P +  YN++++G  K  +  +A   LNEM+E  
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI  Y +   ++        +      PD +TYN LI      G L +  
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
             +  M  + +     T   ++D++         FG LD+M K
Sbjct: 458 ELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVK 500



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 161/401 (40%), Gaps = 42/401 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  I  +NS  ++  LC+    ++A   F+ M+  ++ P +  +N +I G+ ++G+  EA
Sbjct: 224 KPGIVTYNS--VLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           + F  EM+   ++P   ++  LI  + +    D     L+ MK  G  PD + Y ++I  
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 254 FACAGLLK-------RMEG--------TYKSMLT---------------KRMHLRS---- 279
           F  AG +         M G        TY ++L                  M  R     
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPD 401

Query: 280 -STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDL 336
             T   ++  Y   G  +   + +  LL  R  L+ D+V    L +   +    ++ ++L
Sbjct: 402 LCTFTTLIHGYCRQGNFENALQLFDTLLRQR--LRPDVVTYNSLIDGMCRKGDLAKANEL 459

Query: 337 GDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
            DD+ +R I    + + + + SH            + EM       N+ T N I+  Y +
Sbjct: 460 WDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCR 519

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT 455
             + K  +  L ++   +V PD++T   L        +  GA  ++  +       +  T
Sbjct: 520 SGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVT 579

Query: 456 DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
             +++  + +   ++    V+  +     E  R+TY +LI+
Sbjct: 580 YNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLIN 620



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 127/309 (41%), Gaps = 3/309 (0%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N +    ++   C+    + A     EME   + P +  +N +I    + G  + A+
Sbjct: 153 SEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAI 212

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
             ++ M    L P   TY+ +++   K++ +D+     + M     +PD  ++N+LI  F
Sbjct: 213 ALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGF 272

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G +K     YK M  + +     +   ++  +   G +D    + + +         
Sbjct: 273 CRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVR 372
            +   +   + +    S    + D++       ++V    LL+  C   HR +D+  ++ 
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLC-KQHRLLDAEKLLN 391

Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
           EME   V  ++ T   ++  Y +  +F++   L   L  + ++PD+VT   L D      
Sbjct: 392 EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKG 451

Query: 433 DGTGALEMW 441
           D   A E+W
Sbjct: 452 DLAKANELW 460



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 124 QVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           Q+FD + +   +  +  +NS  +I  +C +G + +A   + +M    + P+   Y+ +I 
Sbjct: 423 QLFDTLLRQRLRPDVVTYNS--LIDGMCRKGDLAKANELWDDMHAREILPNHITYSILID 480

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + + G+  +A  FL+EM +    P   TY+ +I+ Y +     +    L+ M+ D   P
Sbjct: 481 SHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFP 540

Query: 243 DHITYNLLIQEF 254
           D IT+N LI  +
Sbjct: 541 DLITFNTLIHGY 552


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 36/309 (11%)

Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+ + F +++ +    IN   +    ++  LC+EG ++ A      M    + P++  Y+
Sbjct: 258 QLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYS 317

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           S++ GY  + + N+A   LN + +M  +P + +Y  +I  + K KM DE       M+  
Sbjct: 318 SLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFK 377

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           G +PD +TYN LI      GL K    +Y   L   MH          + +    ++D +
Sbjct: 378 GIAPDKVTYNSLID-----GLCKSGRISYAWELVDEMHDNGQPA----NIFTYNCLIDAL 428

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
            K      N        LV+K+ +  I+  M++  + L   L  ++GR            
Sbjct: 429 CK------NHHVDQAIALVKKIKDQGIQPDMYT-FNILIYGLC-KVGRL----------- 469

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
                 +    V +++ S     N  T NI++    K   F     LLS++    + PD 
Sbjct: 470 ------KNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDA 523

Query: 419 VTIGILYDA 427
           VT   L  A
Sbjct: 524 VTYETLIQA 532



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/300 (18%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           +IN      II  LC+  L+ +A   + +M    + P +  ++++I+G+  +G+  EA  
Sbjct: 205 KINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFG 264

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
              EM   N++P   T++ L+ A  K   +    +M + MMK +G  P+ +TY+ L+  +
Sbjct: 265 LFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMK-EGVMPNVVTYSSLMDGY 323

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLK 313
                + + +    ++        + +   +++ +    M+D+    +  +      P K
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK 383

Query: 314 ---EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-- 368
                L+  L +    +Y +  +D++ D+     G+   ++    L  A   +H  +D  
Sbjct: 384 VTYNSLIDGLCKSGRISYAWELVDEMHDN-----GQPANIFTYNCLIDALCKNHH-VDQA 437

Query: 369 -SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++V++++   ++ ++ T NI++    K+   K+ + +  +L ++    +  T  I+ + 
Sbjct: 438 IALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNG 497



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/318 (19%), Positives = 126/318 (39%), Gaps = 44/318 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +++F+   +I  LC+ G    A++  ++++G  +K ++ +YN+II    K     +A   
Sbjct: 171 LDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYEL 230

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
            ++M    +SP   T+  LI  +      +E     + M L   +PD+ T+N+L+     
Sbjct: 231 YSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCK 290

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE-- 314
            G LK  +     M+ + +     T  +++D Y     ++K     K +LN+ + +    
Sbjct: 291 EGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKA----KHVLNTISQMGAAP 346

Query: 315 ------DLVRKLAEVYIKNYMFSRLDDLG--------------DDLASRIGRTELVWCLR 354
                  ++    ++ + +   S  +D+                D   + GR    W   
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAW--- 403

Query: 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
                          +V EM       N+ T N ++ A  K         L+ ++  + +
Sbjct: 404 --------------ELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGI 449

Query: 415 KPDIVTIGIL-YDARRIG 431
           +PD+ T  IL Y   ++G
Sbjct: 450 QPDMYTFNILIYGLCKVG 467



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++  + Q   + K I+   I    +    +I  LC+ G ++ A   FQ++       +  
Sbjct: 430 KNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAW 489

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
            YN +++G  K G F+EA   L++M +  + P + TY+ LIQA
Sbjct: 490 TYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQA 532


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 7/269 (2%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           S +N      II   C+ G ME A     EME   +   +++Y+S++HGY+ I   N+ L
Sbjct: 364 SSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCL 423

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           +    +KE    P   +Y  L+  Y K     +     K M+  G   ++ TY++LI  F
Sbjct: 424 VVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGF 483

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                       ++ ML   +    +    +++A+   G +D+     +++   R     
Sbjct: 484 IHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSN 543

Query: 315 DLVRKLAEVY-IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSV 370
              R + E Y +   M S LD L  DL  R G    V     L H  +  H   R + SV
Sbjct: 544 RAFRPIIEGYAVAGDMKSALDTL--DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV-SV 600

Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDF 399
           + +M  A +  N  T  II+  Y    D 
Sbjct: 601 LDKMSIAGITPNEHTYTIIMRGYAASGDI 629



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 119/286 (41%), Gaps = 31/286 (10%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +  V AF+ +     KPS   +  +I  Y+K G  + A      M+   + P +  +  L
Sbjct: 249 QAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 304

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY   +       C++ MK +G     +TY++LI  FA     +  +  +K   TK  
Sbjct: 305 VHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLS 364

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKN-----Y 328
            L       I+ A+   G +++ E+    +         D+   +   Y  I+N      
Sbjct: 365 SLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLV 424

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS-HRGID------SVVREMESAKVRW 381
           +F RL + G             +   ++S+ CLL+ +  I       S+ +EMES  ++ 
Sbjct: 425 VFERLKECG-------------FKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKH 471

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           N  T ++++  ++ + DF +   +  E+    ++PD     +L +A
Sbjct: 472 NNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEA 517



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F    +I      G + EA    ++M+   + P++  Y S I+   K G    A   +
Sbjct: 682 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 741

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM ++ L P   TY  LI+ + +  + D    C + MKL G  PD  +Y+ L+      
Sbjct: 742 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV-----T 796

Query: 258 GLLKR---MEG-TYKSMLT 272
            LL R   MEG TY  +++
Sbjct: 797 SLLSRATVMEGSTYTGIIS 815



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 78  NALIQRLNKK--VSCPLQILQH---DGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNI 132
           NALI  L +K  V   + +L      G    +H + +I  ++  + S  I + F+ +  I
Sbjct: 582 NALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII--MRGYAASGDIGKAFEYFTKI 639

Query: 133 EKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           ++S  +++ +  + ++   C+ G M+ A+   +EM    +  +  IYN +I G+++ G  
Sbjct: 640 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 699

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            EA   + +MKE  + P   TY   I A  K       +  ++ M   G  P+  TY  L
Sbjct: 700 WEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTL 759

Query: 251 IQEFACAGLLKRMEGTYKSM 270
           I+ +A   L  R    ++ M
Sbjct: 760 IKGWARVSLPDRALKCFEEM 779



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     I+      G + +A   F +++   LK  + IY +++    K G+   AL   
Sbjct: 612 NEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVT 671

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM    +   +  Y+ LI  + +     E +  +K MK DG  P+  TY   I     A
Sbjct: 672 REMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKA 731

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G ++R E   + M+   +     T   ++  +    + D+  K ++ +
Sbjct: 732 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 779


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 4/194 (2%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  ++  L  + R+R   ++ D  ++ +    N +    I+  LCEE  ++EA +  +EM
Sbjct: 115 YTNIVDGLCKAERTRDAVKLLDEMRD-KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM 173

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
                 P +  YNS I G  K  + +EA  FL  M    ++P   +Y  +I    K    
Sbjct: 174 AVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDL 230

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D     L  M   GC+PD +TY+ LI  F   G ++R  G   SML            ++
Sbjct: 231 DSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL 290

Query: 286 LDAYMNFGMLDKME 299
           L A    G + K E
Sbjct: 291 LGALHRLGHIGKAE 304



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 11/301 (3%)

Query: 132 IEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           I+KS + + F    ++  LC    +E+A +    M+     P   IYN++I GYSK   F
Sbjct: 34  IDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDF 93

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
            +A  FL EM + +  P   TY  ++    K +   +    L  M+  GCSP+  TYN++
Sbjct: 94  GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVI 153

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           ++       L   +   + M  +       T  + +        +D+  KF  R+     
Sbjct: 154 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM----- 208

Query: 311 PLKEDLVRKLAEV--YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRG 366
           P+  D+V     +    K+        + D +++R    ++V    L+   C      R 
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERA 268

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +  ++  M     R N+   N +L A  ++        +L E+  R   PD+V+     D
Sbjct: 269 M-GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 327

Query: 427 A 427
            
Sbjct: 328 G 328



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G ++ A R    M      P +  Y+S+I G+ K G+   A+  L+ M ++ 
Sbjct: 220 VINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 279

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P    Y+ L+ A  +     + +  L  M+  G +PD ++YN  I     A  +K+ +
Sbjct: 280 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 339

Query: 265 GTYKSMLTKRMHLRSST----------MVAILDAYMNFGMLDKMEKFYKRLLNSR 309
             +  M+ +     +S+             +LD     G  D+    + ++L+ +
Sbjct: 340 AVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK 394



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F   K++  L  E   ++A   FQEM   + +P    +  ++ G  +  +  +A   L
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             MKEM   P    Y+ LI  Y K K + +    L  M  + C P  +TY  ++ 
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD 120


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           R +      ++  LC  G   +A R  ++M    + P++  + ++I+ + + GKF EA  
Sbjct: 206 RADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKK 265

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           F  EM    + P   TY+ +I     +   DE    L +M   GC PD +TYN LI  F 
Sbjct: 266 FYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFC 325

Query: 256 CAGLLKRM-EGT--YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
                KR+ EGT   + M  + + + + T   I+  Y   G  D  ++ + R+
Sbjct: 326 KT---KRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM 375



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 29/318 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+ GL+  A+  F  ME   ++     YNS++ G    G+ ++A   + +M   +
Sbjct: 180 IIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRD 239

Query: 205 LSPQSDTYDGLIQAY---GKY----KMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           + P   T+  LI A+   GK+    K Y+E I  C+         PD  TYN +I     
Sbjct: 240 IVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCI--------DPDVFTYNSMIHGLCM 291

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +   +     M+TK       T   +++ +     +D+  K  + +  S+  L  D 
Sbjct: 292 HGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREM--SQRGLVVDT 349

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--REM 374
           V       I+ Y  +   D   ++ SR+G    +    +L +    + R   ++V    M
Sbjct: 350 VT--FNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESM 407

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           + +++  ++TT NI++     + + +    L   L  + ++PD+VT   +         G
Sbjct: 408 QKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTM-------ISG 460

Query: 435 TGALEMWKRIGFLFKTVE 452
                +W +  FL++ ++
Sbjct: 461 FCRKRLWDKADFLYRKMQ 478



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 141/330 (42%), Gaps = 32/330 (9%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           + L N ++S+    V  ++ N+E   I    +    +I  LC       A+    +M  F
Sbjct: 74  KLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKF 133

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +P +   +S+I+G+ +  +   A+  +++M+EM        Y+ +I  + K  + +  
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNA 193

Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            +    M+ DG   D +TYN L+    C+G         + M+ + +     T  A+++A
Sbjct: 194 LVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINA 253

Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDD---LG 337
           ++  G   + +KFY           E+++R+  +  +  Y        M  ++D+   + 
Sbjct: 254 FVREGKFLEAKKFY-----------EEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQIL 302

Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYL 394
           D + ++    ++V    L++  C    + +D    +VREM    +  +  T N I+  Y 
Sbjct: 303 DLMVTKGCFPDVVTYNTLINGFC--KTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYF 360

Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +       + + S + +R   P+I T  IL
Sbjct: 361 QAGRPDAAQEIFSRMGSR---PNIRTYSIL 387



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC    +E+A+  F+ M+   ++  +  YN +IHG   IG   +A      +    L P 
Sbjct: 391 LCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPD 450

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
             TY  +I  + + +++D+ D   + M+ DG  P
Sbjct: 451 VVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R F++M+   + P +  YN++I+GY ++ K  EA  +  EMK  N+ P   TY
Sbjct: 164 GKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTY 223

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ Y      D+    ++ MK  G  P+ ITY+ L+     A  +       K M+ 
Sbjct: 224 TTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVD 283

Query: 273 KRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           K +    +S  + ++ ++   G LD      K ++    P +      L E Y K   + 
Sbjct: 284 KYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYD 343

Query: 332 RLDDLGDDLASR 343
           +   L D L  +
Sbjct: 344 QAVKLLDKLIEK 355



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    MEEA + F EM+G  ++P++  Y ++I GY  + + ++AL  + EMK   
Sbjct: 191 MINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYG 250

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKRM 263
           + P + TY  L+      +   E    LK M     +P D+  +  LI      G L   
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAA 310

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
               K+M+   +   +     +++ Y   G  D+  K   +L+
Sbjct: 311 ADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLI 353



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 71/146 (48%)

Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
           +EG+++E+V+ FQ+ME   ++ +++ Y+++     + G+F  A  + N+M    + P   
Sbjct: 92  KEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRH 151

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           T++ +I  +      +  +   + MK    SPD ITYN +I  +     ++  E  +  M
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEM 211

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLD 296
             K +     T   ++  Y++   +D
Sbjct: 212 KGKNIEPTVVTYTTLIKGYVSVDQVD 237



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 104 DH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ---KIIGMLCEEGLMEEA 158
           DH   + V+   KNS  + Q    F  W  +E+S + E N +   KII +L     +  A
Sbjct: 11  DHELVYNVLHGAKNSEHALQ----FFRW--VERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
                +M    L+   +++  +I  Y K G   E++    +M+E+ +     +YD L + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
             +   +         M  +G  P   T+N++I  F  +G ++     ++ M ++ +   
Sbjct: 125 IMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPD 184

Query: 279 SSTMVAILDAYMNFGMLDKMEKFY 302
             T   +++ Y     +++ EK++
Sbjct: 185 VITYNTMINGYCRVKKMEEAEKYF 208


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC EG + EA R    M    ++P +  YN+++ G+   G+ +EA   L+ +  + L P 
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             TY+ L+  Y K +  D+     + M + G +PD +TYN ++      G     +  Y 
Sbjct: 517 KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYL 576

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           SM+  R  +   T   I++       +D+  K +  L
Sbjct: 577 SMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSL 613



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 162/413 (39%), Gaps = 60/413 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC+  +++ A   FQ M    ++P+   Y  +IHGY  IGK+ E +  L
Sbjct: 201 NVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQML 260

Query: 198 NEMKEMNLSPQS-----------------------------------DTYDGLIQAYGKY 222
            EM    L P                                       Y  L+  Y   
Sbjct: 261 QEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATE 320

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
               E+   L +M  +G SPDH  +N++   +A   ++      +  M  +R+     T 
Sbjct: 321 GSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTY 380

Query: 283 VAILDAYMNFGML-DKMEKFYKRLLNSRTP---LKEDLVRKLAEVYIKNYMFSRLDDLGD 338
            A++DA    G + D + KF + +    TP   +   LV  L  V      + + ++L  
Sbjct: 381 GALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTV----DKWEKAEELFF 436

Query: 339 DLASRIGRTELVWCLRLLSHAC-----LLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393
           ++  +  R + V+   L+ + C     + + R ID ++R      VR +V + N ++  +
Sbjct: 437 EVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLR----VGVRPDVISYNTLVDGH 492

Query: 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIGILY----DARRIGFDGTGALEMWKRIGFLFK 449
                      LL  + +  +KPD VT   L      ARRI    +   EM  + G    
Sbjct: 493 CLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMK-GLTPD 551

Query: 450 TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
            V  NT  ++  ++  G F    +E+Y S+     +   +TY  +I+ + K+N
Sbjct: 552 VVTYNT--ILHGLFQTGRF-SEAKELYLSMINSRTQMNIYTYNIIINGLCKNN 601



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 4/176 (2%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           F+   ++   C E   EEA+     M      +  P++  Y ++I G  K    + A   
Sbjct: 165 FSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGV 224

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
              M +  + P + TY  LI  Y     + E+   L+ M   G  PD   Y +L+     
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCK 284

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTP 311
            G        + S++ K +    +    +L  Y   G L +M  F   ++ N  +P
Sbjct: 285 NGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSP 340



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           ++++N +    II  LC+   ++EA + F  +    L+  +   N +I    K G+  +A
Sbjct: 582 RTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDA 641

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
           +     +    L P  +TY  + +   K    +E+D     M+ +G +P+    N L++ 
Sbjct: 642 MDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRW 701

Query: 254 FACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAY 289
               G + R  G Y S L  K   L +ST   ++  Y
Sbjct: 702 LLHRGDINR-AGAYLSKLDEKNFSLEASTTSMLISIY 737


>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
 gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
          Length = 800

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 158/388 (40%), Gaps = 45/388 (11%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           QV + +K  +  RI  +E +   ++  LC+   +++AV    EM+G  +   +  Y ++I
Sbjct: 392 QVVEEFKRFKDLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLI 451

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
           +GY  +GK  +A     EM+   L P   T++ L+ A+ +  + +E     + MK     
Sbjct: 452 NGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLK 511

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           P+ IT+N++I+     G +   E  + +M  K +        A++  Y      +K  + 
Sbjct: 512 PNAITHNVMIEGLCIGGKVTEAEAFFCNMEDKSI----DNYGAMITGYCEAKHTEKASEL 567

Query: 302 Y-----KRLLNSRTPLKEDLVRKLAEVYIKN---YMFSRLDDLGDDLASRIGRTELVWCL 353
           +     + LL  R  + + L+ KL E   K+   ++   + DL  + +  +    +  C 
Sbjct: 568 FFELSERGLLMDRGYIYK-LLEKLCEEGEKDRALWLLKTMLDLNMEPSKDMYGKVITACY 626

Query: 354 RLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413
           R          R  ++V   +  + +  ++ T   ++    +       R L  ++  R 
Sbjct: 627 R------AGDMRNAEAVFDILRKSGLTPDIFTYTTMINVCCRQNRLSEARNLFQDMKHRG 680

Query: 414 VKPDIVTIGILYD-----------ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462
           +KPD+VT  +L D           AR+       A  +WK +    +  EI  D +    
Sbjct: 681 IKPDLVTFTVLLDGHLKRVHSEAFARKRKEVNLAASNIWKEM----QNTEIRPDVICYTA 736

Query: 463 YGKGH---------FLRYCEEVYSSLEP 481
              GH            Y E +Y  +EP
Sbjct: 737 LIDGHCKVDRLEDAIGLYDEMMYRGVEP 764



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 7/304 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N++    II   C +G + EA   FQEME   + P+   Y + I G     + +     L
Sbjct: 233 NDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQRSDFGYQVL 292

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
              KE N+      Y  +I+ +      D  ++ L  M+      D   Y+ LI+ +  A
Sbjct: 293 QAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGYCKA 352

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G L +    +  M +K +      +  IL  +   GM  ++ + +KR  + R  L E   
Sbjct: 353 GDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLDEVSY 412

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--IDS--VVRE 373
             + +   K     +   L D++  +    +++    L++  C   H G  +D+  V  E
Sbjct: 413 NIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYC---HVGKLVDAFRVFEE 469

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
           ME   +  +V T NI+L A+ +         L   + ++ +KP+ +T  ++ +   IG  
Sbjct: 470 MEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGGK 529

Query: 434 GTGA 437
            T A
Sbjct: 530 VTEA 533



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 129/299 (43%), Gaps = 31/299 (10%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+++EA+ A  +++     P +  +N +++     GK + AL    ++K + L+P   TY
Sbjct: 178 GMLDEAINALFQIKRRGFLPHIFTFNYLMNKLIANGKVDAALAIYKQLKSLGLNPNDYTY 237

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I+A+ +     E     + M+L G  P+   Y   I E  CA   +R +  Y+ +  
Sbjct: 238 SIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYI-EGLCAN--QRSDFGYQVLQA 294

Query: 273 ---KRMHLRSSTMVAILDAYMNFGMLDKME----KFYKRLLNSRTPLKEDLVRKLAEVYI 325
                + +     VA++  + N   +D+ E       K+ L S      +L+R     Y 
Sbjct: 295 WKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRG----YC 350

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE----MESAKVRW 381
           K    S+   L +D+ S+  +T  V    +L + C    +G+ S V E     +  ++  
Sbjct: 351 KAGDLSKALALHNDMESKGIKTNCVIVSTILQYFC---EKGMHSQVVEEFKRFKDLRIFL 407

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV----------TIGILYDARRI 430
           +  + NI++ A  K++       LL E+  + +  DI+           +G L DA R+
Sbjct: 408 DEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAFRV 466



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 29/197 (14%)

Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAV 159
           +KD +  VI     +   R    VFD+ +   KS +    F    +I + C +  + EA 
Sbjct: 614 SKDMYGKVITACYRAGDMRNAEAVFDILR---KSGLTPDIFTYTTMINVCCRQNRLSEAR 670

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
             FQ+M+   +KP L  +  ++ G+ K    +EA  F  + KE+NL+  +          
Sbjct: 671 NLFQDMKHRGIKPDLVTFTVLLDGHLK-RVHSEA--FARKRKEVNLAASN---------- 717

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
                        K M+     PD I Y  LI        L+   G Y  M+ + +    
Sbjct: 718 -----------IWKEMQNTEIRPDVICYTALIDGHCKVDRLEDAIGLYDEMMYRGVEPDR 766

Query: 280 STMVAILDAYMNFGMLD 296
           +T  A+L    N G +D
Sbjct: 767 ATCTALLSGCRNRGDVD 783


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 135/323 (41%), Gaps = 7/323 (2%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI----NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +L+   +S ++ Q  D +++++K  I    N F    +I +  +    ++A   F+ M  
Sbjct: 168 YLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTI--MINIYGKAYYSDKADDLFRSMRK 225

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
               P+L  Y ++++ +++ G    A     E++ +   P   TY+ L++AY + +    
Sbjct: 226 ALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTG 285

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                + M   G  PD ++YN+LI  F  AGL    +  Y SM          + + +L 
Sbjct: 286 AKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLS 345

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
           +Y   G + + E+  + + NS       +   L   Y  +     ++ L + + S + + 
Sbjct: 346 SYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKP 405

Query: 348 ELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
           ++     L++      +    + V   +ES  +  +V +   ++ AY + K F+    + 
Sbjct: 406 DISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIF 465

Query: 407 SELPTRHVKPDIVTIGILYDARR 429
            ++      PD  T  +   + R
Sbjct: 466 QKMVKAGCIPDRATAKVFLSSCR 488



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 136/341 (39%), Gaps = 22/341 (6%)

Query: 155 MEEAVRAFQEMEGFALKPS---------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           +E+A + F EM+     P          +  YN+ +    K G+ ++A     +M++  +
Sbjct: 134 LEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P  +T+  +I  YGK    D+ D   + M+   C P+  TY  L+   A  G   R E 
Sbjct: 194 LPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEE 253

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
            +  + +        T  A+L+AY         ++ ++ ++ +   ++ D V       I
Sbjct: 254 IFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAG--VRPDQV----SYNI 307

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-------IDSVVREMESAK 378
               F R     D  A      E  +   + SH  LLS           + +VRE+E++ 
Sbjct: 308 LIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSG 367

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V+ +    N +L AY        +  LL  + +   KPDI T+  L +A   G     A 
Sbjct: 368 VKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAE 427

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL 479
           E++  +     T ++ +   ++  Y +    R C  ++  +
Sbjct: 428 EVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKM 468



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 144/366 (39%), Gaps = 55/366 (15%)

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           ++G   KP +  +N +I  Y K  ++ EA    + MK+    P   +++ L+ AY +   
Sbjct: 74  LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQ 133

Query: 225 YDEIDMCLKMMKLDGCSPDHI---------TYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
            ++ +     MK    SP  +         TYN  ++    +G L + E T++ M  + +
Sbjct: 134 LEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
               +T   +++ Y      DK +  ++ +  +  P        L   + +     R ++
Sbjct: 194 LPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEE 253

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTANIILLAY 393
           +  +L S +G    V+    L  A        G   V + M  A VR +  + NI++ A+
Sbjct: 254 IFAELQS-VGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAF 312

Query: 394 ---------------LKMKDFK-----HLRVLLS---------------ELPTRHVKPDI 418
                          +K   FK     H+ +L S               E+    VKPD 
Sbjct: 313 GRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDT 372

Query: 419 VTIGILYDARRIGFDGTGAL-EMWKRIGFLFKTV---EINTDPLVLAVYGKGHFLRYCEE 474
                L  A    +  +G + EM   +  +  +V   +I+T   ++  Y +G ++   EE
Sbjct: 373 FMFNSLLSA----YGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEE 428

Query: 475 VYSSLE 480
           V++SLE
Sbjct: 429 VFNSLE 434


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 6/200 (3%)

Query: 123 PQVFDMWKNI------EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
           P++ D+ + +          +N+ N+      LC  G  E+A +  +EM      P    
Sbjct: 395 PELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDAST 454

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           Y  +I    +  + ++A L   EMK++ ++P   TY  LI ++ K  + ++       M+
Sbjct: 455 YTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMR 514

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GCSP+ +TY  L+  +  +  L +    +  M+    +  + T  A++D     G + 
Sbjct: 515 SAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQ 574

Query: 297 KMEKFYKRLLNSRTPLKEDL 316
           K  + Y +L+ +   ++ D 
Sbjct: 575 KACEVYAKLIGTSDNIESDF 594



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  + ++G ++ A++   +M   +  P++  Y +++ G  K G+  +AL  L+ M++  
Sbjct: 684 LIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKG 743

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
            SP   TY  LI   GK    D        MK  GC+P+++TY +LI     AG
Sbjct: 744 CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAG 797



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEME 166
           VI FL    +++++ + F +++ ++K  +N   +    +I   C+ GL+E+A   F EM 
Sbjct: 458 VITFL---CQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMR 514

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKY 222
                P++  Y +++H Y K  +  +A    + M      P + TY    DGL +A    
Sbjct: 515 SAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQ 574

Query: 223 KMYD------------EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           K  +            E D   +    D  SP+ +TY  L+     A  +        +M
Sbjct: 575 KACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAM 634

Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           L            A++D +   G +D  ++ + R+
Sbjct: 635 LAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRM 669



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+     ++   C+ G ++ A   F  M      PS+  Y S+I    K G+ + A+  L
Sbjct: 642 NQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 701

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M + + +P   TY  ++    K    ++    L +M+  GCSP+ +TY  LI     A
Sbjct: 702 SQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKA 761

Query: 258 G 258
           G
Sbjct: 762 G 762



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 113/318 (35%), Gaps = 39/318 (12%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           E  +++     ++I  L E  L  EA+     M   +  P++  Y +++ G+ K  +   
Sbjct: 265 EDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGW 324

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYG-------KYKMYDEIDMCLKMMKLDGCSPDHI 245
               +N M     +P    ++ L+  Y         YK+++ ++ C       GC P ++
Sbjct: 325 CKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTC-------GCPPGYV 377

Query: 246 TYNLLI------QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
            YN+ I      +E     LL   E  Y+ ML     L               G  +K  
Sbjct: 378 VYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAF 437

Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF----SRLDD--LGDDLASRIGRTELVWCL 353
           +  K ++  R     D     A  Y K   F     R+D   L      ++G    V+  
Sbjct: 438 QIVKEMM--RKGFVPD-----ASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490

Query: 354 RLL----SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
            +L      A L+      S   EM SA    NV T   +L AYLK K       +   +
Sbjct: 491 TILIDSFCKAGLIEQ--AQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRM 548

Query: 410 PTRHVKPDIVTIGILYDA 427
                 P+ +T   L D 
Sbjct: 549 VGDACYPNAITYSALIDG 566



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 64/167 (38%)

Query: 130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
           K+ +    N      ++  LC+   + +A      M     +P+  +Y++++ G+ K+G+
Sbjct: 599 KDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGE 658

Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
            + A      M +    P   TY  LI    K    D     L  M  D C+P+ +TY  
Sbjct: 659 IDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTA 718

Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
           ++      G  ++       M  K       T  A++D     G +D
Sbjct: 719 MVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVD 765



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 18/198 (9%)

Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA------ 169
           +S+Q+ Q  D++  +  +    N      +I  LC+ G +++A   + ++ G +      
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 170 ----------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
                     + P++  Y ++++G  K  K ++A   L+ M      P    YD L+  +
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            K    D        M   G  P   TY  LI      G L         ML    +   
Sbjct: 654 CKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNV 713

Query: 280 STMVAILDAYMNFGMLDK 297
            T  A++D     G  +K
Sbjct: 714 VTYTAMVDGLCKTGETEK 731


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +EF    +I  LC +G ++EA+   ++ME      S+  YN++I G+ K  K  EA    
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+   +S  S TY+ LI    K +  ++    +  M ++G  PD  TYN L+  F   
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRG 553

Query: 258 GLLKRMEGTYKSMLT 272
           G +K+     ++M +
Sbjct: 554 GDIKKAADIVQAMTS 568



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 134/335 (40%), Gaps = 5/335 (1%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE 152
           Q+++    W+      ++       R            N +    +++    ++  LC+ 
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++ A+     M      P +  YNS+I G  K+G+  EA+ FL++M   + SP + TY
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI    K    +E     +++   G  PD  T+N LIQ        +     ++ M +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           K       T   ++D+  + G LD+     K++  S           L + + K      
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488

Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANII 389
            +++ D++    + R  + +    L      S R  D+  ++ +M     + +  T N +
Sbjct: 489 AEEIFDEMEVHGVSRNSVTY--NTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           L  + +  D K    ++  + +   +PDIVT G L
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 145/369 (39%), Gaps = 39/369 (10%)

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           K  ++ FN   +I  LC    +  A+   ++M  + L P  + + +I+ GY + G  + A
Sbjct: 186 KPDVSTFNV--LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           L    +M E   S  + + + ++  + K  ++ D ++   +M   DG  PD  T+N L+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312
               AG +K                     + I+D  +  G  D     Y  +++    L
Sbjct: 304 GLCKAGHVKH-------------------AIEIMDVMLQEG-YDPDVYTYNSVISGLCKL 343

Query: 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVV 371
            E  V++  E               D + +R      V    L+S  C  +       + 
Sbjct: 344 GE--VKEAVEFL-------------DQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
           R + S  +  +V T N ++      ++ +    L  E+ ++  +PD  T  +L D+    
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448

Query: 432 FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTY 491
                AL M K++        + T   ++  + K + +R  EE++  +E +   +   TY
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTY 508

Query: 492 QNLIDLVIK 500
             LID + K
Sbjct: 509 NTLIDGLCK 517


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I  LC E  + EA R FQ+M+   + PS   YNS+IHGY K     +AL   +E
Sbjct: 375 FTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSE 434

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFAC 256
           M    + P   T+  LI  Y   +   +I   + +   M + G  PD +TY  LI     
Sbjct: 435 MTASGVEPNIITFSTLIDGYCNVR---DIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFK 491

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
              +K     Y  ML   +H    T   ++D +   G L     FY+
Sbjct: 492 EANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G M EAV    EME   L P +  Y  +I+G     +  EA     +MK   + P S
Sbjct: 350 CKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSS 409

Query: 210 DTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            TY+ LI  Y K Y M   +D+C +M    G  P+ IT++ LI  +     +K   G Y 
Sbjct: 410 ATYNSLIHGYCKEYNMEQALDLCSEMTA-SGVEPNIITFSTLIDGYCNVRDIKAAMGLYF 468

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
            M  K +     T  A++DA+     + +  + Y  +L +
Sbjct: 469 EMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEA 508



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 36/280 (12%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +  MEEA + F+ M+   + P+L  Y+++I GY K G   +A     E+    L P 
Sbjct: 244 LCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 209 SDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              +  L+  + K + +     + + M+K  G  P+   YN LI     +G +    G  
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMVKF-GVDPNLYVYNCLIHGHCKSGNMLEAVGLL 362

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
             M +  +     T   +++       + +  + ++++ N R          L   Y K 
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 422

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
           Y   +  DL                                    EM ++ V  N+ T +
Sbjct: 423 YNMEQALDL----------------------------------CSEMTASGVEPNIITFS 448

Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++  Y  ++D K    L  E+  + + PD+VT   L DA
Sbjct: 449 TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDA 488



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 37/174 (21%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           ++  + Q + ++K I  + +  N      ++   C+   +  A   F  M  F + P+L 
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
           +YN +IHG+ K G   EA+  L+EM+ +NLSP                            
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSP---------------------------- 372

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                  D  TY +LI        +      ++ M  +R+   S+T  +++  Y
Sbjct: 373 -------DVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGY 419



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 108/277 (38%), Gaps = 21/277 (7%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           +Q M    L P + IY  +     K G +++    L+EM  + + P    Y   I    +
Sbjct: 187 YQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCR 246

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
               +E +   ++MK  G  P+  TY+ +I  +   G +++  G YK +L   +      
Sbjct: 247 DNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVV 306

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
              ++D +     L      +  ++                +Y+ N +       G+ L 
Sbjct: 307 FGTLVDGFCKARELVTARSLFVHMVKFGVD---------PNLYVYNCLIHGHCKSGNMLE 357

Query: 342 SRIGRTELVWCLRL----LSHACLLSHRGIDSVVRE-------MESAKVRWNVTTANIIL 390
           + +G    +  L L     ++  L++   I+  V E       M++ ++  +  T N ++
Sbjct: 358 A-VGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLI 416

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             Y K  + +    L SE+    V+P+I+T   L D 
Sbjct: 417 HGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDG 453



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 2/136 (1%)

Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           Q+ +   +++ ++  RI  +      +I   C+E  ME+A+    EM    ++P++  ++
Sbjct: 389 QVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFS 448

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
           ++I GY  +     A+    EM    + P   TY  LI A+ K     E       M   
Sbjct: 449 TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEA 508

Query: 239 GCSPDHITYNLLIQEF 254
           G  P+  T+  L+  F
Sbjct: 509 GIHPNDHTFACLVDGF 524



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 120/317 (37%), Gaps = 37/317 (11%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170
           R  ++S  S    ++F+  ++I+  + +      +I    E GL EEA+   +EM+    
Sbjct: 104 RLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREMK---C 160

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
            P  +   SI++G  +  +F+   +    M    L P    Y  L Q   K  +Y + + 
Sbjct: 161 SPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEK 220

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
            L  M   G  P+   Y + I +      ++  E  ++ M    +     T  A++D Y 
Sbjct: 221 LLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYC 280

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
             G + +    YK +L             +AE+     +F  L D            ELV
Sbjct: 281 KTGNVRQAYGLYKEIL-------------VAELLPNVVVFGTLVD------GFCKARELV 321

Query: 351 WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
               L  H   +   G+D             N+   N ++  + K  +      LLSE+ 
Sbjct: 322 TARSLFVH---MVKFGVDP------------NLYVYNCLIHGHCKSGNMLEAVGLLSEME 366

Query: 411 TRHVKPDIVTIGILYDA 427
           + ++ PD+ T  IL + 
Sbjct: 367 SLNLSPDVFTYTILING 383


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F+   II   C   LM+ A  AF++M+   + P+L  +N++I+G+ K G  ++A   L
Sbjct: 428 NVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLL 487

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             + E  L P   T+  ++    + K  +E   C   M   G +P+ + YN+LI+     
Sbjct: 488 ESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTI 547

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
           G + R     + M  + +   + +  A++  +     ++K +K +  +  SR+ L  D
Sbjct: 548 GDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSM--SRSGLNPD 603



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    I+  LC+    EEA+  F EM  + + P+  IYN +I     IG    ++  L  
Sbjct: 500 FTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRR 559

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M++  +SP + +Y+ LIQ + +    ++       M   G +PD+ TY+  I+  + +G 
Sbjct: 560 MQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGR 619

Query: 260 LKRMEGTYKSM 270
           L+  +  + SM
Sbjct: 620 LEEAKKMFYSM 630



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I   C++G +++A +  + +    LKP +  ++SI+ G  +I +  EAL    E
Sbjct: 467 FNT--LINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTE 524

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M E  ++P +  Y+ LI++             L+ M+ +G SPD  +YN LIQ F     
Sbjct: 525 MIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNK 584

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK-FYKRLLNSRTP 311
           +++ +  + SM    ++  + T  A ++A    G L++ +K FY    N  +P
Sbjct: 585 VEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSP 637



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +  +V+  + M+   + P    YN++I  + ++ K  +A    + M    
Sbjct: 540 LIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSG 599

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           L+P + TY   I+A  +    +E       M+ +GCSPD    NL+I+
Sbjct: 600 LNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIK 647



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL   +   F ++    L P+  +YN++I    K    + A L   +M   N      TY
Sbjct: 158 GLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTY 217

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI    K  + DE    ++ MK  G  P+  TY +LI+ F  A  +    G +++M  
Sbjct: 218 NTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKD 277

Query: 273 KRMHLRSSTMVAIL 286
             ++   +T+ A++
Sbjct: 278 SGVYPNEATVRALV 291



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
           +V   +E+     + + ++  +++  + ++G  N +     ++  + LSP +  Y+ LI 
Sbjct: 128 SVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALID 187

Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-------LLKRM--EGTYK 268
           A  K    D   +  + M  D C  D  TYN LI      G       L+++M  +G + 
Sbjct: 188 ALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFP 247

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
           ++ T  M +    + + +D    FG+ + M+
Sbjct: 248 NVFTYTMLIEGFCIASRVDEA--FGVFETMK 276



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + F    +I  +C+ G+++EA+R  ++M+     P++  Y  +I G+    + +EA    
Sbjct: 213 DRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVF 272

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
             MK+  + P   T   L+  +G ++  D
Sbjct: 273 ETMKDSGVYPNEATVRALV--HGVFRCVD 299


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + KNS+ +  +    +M +    + +  +NS  +I  LC EG +EE V+  +EME   L 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNS--LISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+   +  ++ G+ K G   +A  +++ M E N+ P    Y+ LI  Y +    ++    
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M   G SP+  TYN LI  F+ +G  +   G    M  K +     T   ++ A   
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 292 FGMLDKMEKF 301
            G + K  K 
Sbjct: 452 KGEVRKAVKL 461



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 39/294 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-- 194
           I  FN+  +I  LC  G + +A    ++++ + L PS+  YNS+I GY K G        
Sbjct: 191 IYTFNT--VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 195 -LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + L EM E  +SP + T+  LI  Y K           + MK  G +   +TYN LI  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G ++      + M    +     T   +L  +   GM+     +   +        
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE-- 366

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
                   +V I N +         D+  R+G+ E                    +V   
Sbjct: 367 -------PDVVIYNILI--------DVYRRLGKMEDAM-----------------AVKEA 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           M    +  NVTT N ++  + +  D++    LL E+  + ++ D+VT  +L  A
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ME+A+   + M    + P++  YN +I G+S+ G +  A   L+EMKE  +     TY
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI A        +    L  M   G  P+H+TYN +IQ F   G +K        M  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            R      T    +  +   G +D+       +L+
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC +G + +AV+   EM    L+P+   YN+II G+   G    A      M++  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNLL 250
                 TY+  I+ + +    DE +  L  M LD C  P+ ITY  +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEM-LDKCLVPNGITYETI 550


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 118/281 (41%), Gaps = 1/281 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+     EAV  ++EM    LKP +    ++I G  K  K +EA    + M  ++
Sbjct: 306 VVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLD 365

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +      Y+ LI  + +    ++    +  M+ +GC PD +TYN+L+  +   G+  + E
Sbjct: 366 IQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAE 425

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M    ++    +   +L        LDK   F    +             L + +
Sbjct: 426 NLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAF 485

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI-DSVVREMESAKVRWNV 383
            +    +   +L  ++  +  + + V    L++    + +  + + +  +M + K+  NV
Sbjct: 486 CRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNV 545

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              NI+L    K+  FKH + +  ++  + V PD VT   L
Sbjct: 546 NVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 109/298 (36%), Gaps = 13/298 (4%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +  F   + I  LC+   +E       +M+ F   P     N  +H      +  +AL  
Sbjct: 228 LTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQM 287

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           + +M      P   TY  ++     ++ + E     + M   G  PD +    LI     
Sbjct: 288 VEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCK 347

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKED 315
              +         MLT  + L  S   A++  +   G    +EK YK +    R   + D
Sbjct: 348 NQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAG---SIEKAYKTVSFMQRNGCEPD 404

Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRI---GRTELVWCLRLLSHACLLSH---RGIDS 369
           +V     + + +Y    + D  ++L  ++   G     +   +L      +H   +    
Sbjct: 405 VVTY--NILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAF 462

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           V   ME      ++ + NI++ A+ + K       L  E+  + ++ D VT GIL + 
Sbjct: 463 VSDHMEVGGF-CDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILING 519



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 69/179 (38%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C    +  A+  F+EM    ++     Y  +I+G   IG  N A    ++M    
Sbjct: 481 LIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTK 540

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P  + Y+ ++    K   +         M     SPD +T+N LI     +       
Sbjct: 541 IVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEAL 600

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
             +K M TK +   + T   I+   ++ G      + ++ ++ +   L  D+  +L  V
Sbjct: 601 DLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLISV 659


>gi|388500892|gb|AFK38512.1| unknown [Medicago truncatula]
          Length = 249

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 149 LCEEGLMEEAVRAFQEMEGF--ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
             + G  + A R   +M+ +   +KP+      II GY K G   EAL FL +MKE+ + 
Sbjct: 62  FAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVH 121

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
           P    ++ LI+ Y      D ++  L +M+  G  PD +TY+ ++  ++ +GL+   E  
Sbjct: 122 PNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEI 181

Query: 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           +  M+   +         +   Y+  G  DK E     LLNS T
Sbjct: 182 FDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEA----LLNSMT 221



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           F +N         +  M +   K + NE     II   C+EG M EA+R   +M+   + 
Sbjct: 62  FAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVH 121

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+  ++NS+I GY  I   +     L  M+E  + P   TY  ++ A+    + D  +  
Sbjct: 122 PNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEI 181

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
              M      PD   Y++L + +  AG   + E    SM
Sbjct: 182 FDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSM 220


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 112/292 (38%), Gaps = 34/292 (11%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F EM    LKP++ IY S+I GY K G+ + A    +EM    +SP +
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            T+  LI          E +     M      P+ +TYN+LI+     G   R       
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
           M+ K +   + T   ++    + G + +  +F   L   +  L E     L   Y K   
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKE-- 613

Query: 330 FSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389
             RLDD  D                    AC           REM    V  ++   +++
Sbjct: 614 -GRLDDALD--------------------AC-----------REMLGRGVAMDLVCYSVL 641

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           +   L+ +D + +  LL ++  + ++PD V    + DA     +   A  +W
Sbjct: 642 IYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLW 693



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 132/322 (40%), Gaps = 25/322 (7%)

Query: 132 IEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190
           +EK  + + +  + +I  LC  G + EA     +++G   K +   +++++HGY K G+ 
Sbjct: 557 VEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRL 616

Query: 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITY 247
           ++AL    EM    ++     Y  LI  YG  +  D    ID+ LK M   G  PD++ Y
Sbjct: 617 DDALDACREMLGRGVAMDLVCYSVLI--YGILRQQDRRSIIDL-LKQMHDQGLRPDNVLY 673

Query: 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             +I   A AG LK   G +  M+++       T  A+++     G++DK E   + +L 
Sbjct: 674 TTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA 733

Query: 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367
           S +   ++      +         +   L D L        + + + +         RG 
Sbjct: 734 SNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILI---------RGF 784

Query: 368 DSVVREMESAKVRWNVTTANI---------ILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             + R  E+A+V  N+  + I         I+  Y +  D K    L   +  R V PD 
Sbjct: 785 CKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDT 844

Query: 419 VTIGILYDARRIGFDGTGALEM 440
           V    L     +  + T A E+
Sbjct: 845 VAYNFLIYGCCVTGELTKAFEL 866



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 99/279 (35%), Gaps = 40/279 (14%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+   + EAV     +    L+  +  Y +++ G  K+ +F      +NEM E    P 
Sbjct: 260 LCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPS 319

Query: 209 SDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
                 L+     K  +    D+  K+ K  G +P    YN LI      G L   E  +
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAFDLVNKVKKF-GVAPSLFVYNALINSMCKDGKLDEAESLF 378

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
            +M  K +     T   ++D++   G LD    F               + K+ EV IK 
Sbjct: 379 NNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF---------------LGKMTEVGIKA 423

Query: 328 --YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
             Y +S L                     +  H  L   R   S+  EM +  ++ NV  
Sbjct: 424 TVYPYSSL---------------------ISGHCKLGKLRAAKSLFDEMIANGLKPNVVI 462

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              ++  Y K  +  +   L  E+  + + P+  T   L
Sbjct: 463 YTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C  G ++EA++ ++ M    + P    YN +I+G    G+  +A    ++M    
Sbjct: 815 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 874

Query: 205 LSPQSDTYDGLIQA 218
           + P   TY+ LI  
Sbjct: 875 VKPNRATYNSLIHG 888



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 93  QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE 152
           ++L  +    ++ +   + +L +     +  Q+ D+   +E    N      +I   C+ 
Sbjct: 730 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL--LEGFLANTVTYNILIRGFCKL 787

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA      M    + P    Y++II+ Y + G   EA+     M    ++P +  Y
Sbjct: 788 GRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAY 847

Query: 213 DGLIQAYG---KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + LI  YG     ++    ++   MM+  G  P+  TYN LI 
Sbjct: 848 NFLI--YGCCVTGELTKAFELRDDMMR-RGVKPNRATYNSLIH 887


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 142/332 (42%), Gaps = 20/332 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + AVI      +   +   +FD M K      I  FN  K+I +LC++G ++E+ + F +
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFN--KLIHVLCKKGNVQESEKLFSK 241

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           +    + P+L  +N  I G  + G  +EA   L  +    L+P   +Y+ LI  + K+  
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E +  L  M   G  P+  TYN +I  F  AG+++  +   +  + K       T  +
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSS 361

Query: 285 ILDAYMNFGMLDK-MEKFYKRL---LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +++   N G +++ M  FY+ +         L   LV+ L++  +       + D+ +  
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH- 420

Query: 341 ASRIGRTELVWCLRLLSH-----ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
               G +  +W   L+ +      CL    GI   + +  +     ++ T N ++  Y K
Sbjct: 421 ----GCSPDIWTYNLVVNGLCKMGCLSDANGI---LNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++      +L  + +  + PD++T   L + 
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 165/421 (39%), Gaps = 59/421 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F     I  LC +G ++EA R  + +    L P +  YN++I G+ K  K  EA  +L
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    + P   TY+ +I  + K  M    D  L+     G  PD  TY+ LI      
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 258 GLLKR-MEGTYKSMLTKRMH--LRSSTMVA-------ILDAYMNFGMLDKMEK------- 300
           G + R M   Y++M     H  +  +T+V        +L A     M D ME        
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ--LMKDMMEHGCSPDIW 427

Query: 301 FYKRLLNSRTPLK---------EDLVRK-----------LAEVYIKNYMFSRLDDLGDDL 340
            Y  ++N    +           D + K           L + Y K     +  ++ D +
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKVRWNVTTANIILLAYLKMK 397
            S     +++    LL+  C    R +D+VV   + M       N+ T NI++ ++ K +
Sbjct: 488 LSHGITPDVITYNTLLNGLC--KARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDR 545

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE--------MWKRIGFLFK 449
                  L  E+ TR + PDIVT+  L      G    G L+        + K   F + 
Sbjct: 546 KVSEAMELFKEMKTRGLTPDIVTLCTLI----CGLCSNGELDKAYELFVTIEKEYKFSYS 601

Query: 450 TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGT 509
           T   N   +++  + +   +   E+++  +         +TY+ +ID   K    +L  T
Sbjct: 602 TAIFN---IMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHT 658

Query: 510 F 510
           F
Sbjct: 659 F 659



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 139 EFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           EFN+     +I    +E    EA   F EM    + P +  +N +IH   K G   E+  
Sbjct: 178 EFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEK 237

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +++ +  + P   T++  IQ   +    DE    L+ +  +G +PD I+YN LI  F 
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
               L   E     M+   +     T   I++ +   GM+   +K  +
Sbjct: 298 KHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 20/209 (9%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           I  +++  R  ++ +  ++++ ++    +  +  +N+  I+ +L E G   +A + +  M
Sbjct: 80  IGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNA--IMNILVEYGYFSQAHKVYMRM 137

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK---- 221
           +   + P +  +   +  +   G+   AL  LN M        + +Y  +I  + K    
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQ 197

Query: 222 ---YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
              Y ++DE      M+K  G  PD +T+N LI      G ++  E  +  ++ + +   
Sbjct: 198 IEAYHLFDE------MLK-QGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
             T    +      G +D+  +  + +++
Sbjct: 251 LFTFNIFIQGLCRKGAIDEAARLLESIVS 279


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 121 QIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
            +   F+++  +E    K+ I  +N+  +IG  C  G  ++  +  ++M    + P++  
Sbjct: 278 SLDNAFNLFNEMEIKGFKADIITYNT--LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335

Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           ++ +I  + K GK  EA   L EM +  ++P + TY+ LI  + K    +E    + +M 
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
             GC PD +T+N+LI  +  A  +      ++ M  + +   + T   ++  +   G L+
Sbjct: 396 SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLE 455

Query: 297 KMEKFYKRLLNSRTPLKEDLV 317
             +K ++ +++ R  ++ D+V
Sbjct: 456 VAKKLFQEMVSRR--VRPDIV 474



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           +S Q     ++ + +E+  I  +      II  LC++G ++ A   F EME    K  + 
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            YN++I G+   G++++    L +M +  +SP   T+  LI ++ K     E D  LK M
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359

Query: 236 KLDGCSPDHITYNLLIQEFA 255
              G +P+ ITYN LI  F 
Sbjct: 360 MQRGIAPNTITYNSLIDGFC 379



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 3/302 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC  G + +AV     M     +P+   Y  +++   K G+   A+  L +M+E N
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +   +  Y  +I    K    D        M++ G   D ITYN LI  F  AG      
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+ +++     T   ++D+++  G L + ++  K ++             L + +
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREMESAKVRWN 382
            K         + D + S+ G    +    +L +    ++R  D +   REM    V  N
Sbjct: 379 CKENRLEEAIQMVDLMISK-GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437

Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
             T N ++  + +    +  + L  E+ +R V+PDIV+  IL D      +   ALE++ 
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG 497

Query: 443 RI 444
           +I
Sbjct: 498 KI 499



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G +E+A+  F ++E   ++  + IY  IIHG     K ++A      +    +   
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLD 542

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           +  Y+ +I    +     + D+  + M  +G +PD +TYN+LI+
Sbjct: 543 ARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 143/360 (39%), Gaps = 24/360 (6%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R     ++++Q   V  + K +E   I    +    +I   C    +  A     ++   
Sbjct: 93  RLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKL 152

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDE 227
             +P   I+N++++G     + +EAL  ++ M EM   P   T + L+       K+ D 
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
           + +  +M++  G  P+ +TY  ++     +G         + M  + + L +     I+D
Sbjct: 213 VVLIDRMVE-TGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271

Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM-FSRLDD----LGDDLAS 342
                G LD     +  +       K D++       I  +    R DD    L D +  
Sbjct: 272 GLCKDGSLDNAFNLFNEM--EIKGFKADIIT--YNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           +I    + + + + S       R  D +++EM    +  N  T N ++  + K    +  
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387

Query: 403 RVLLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEMWKRI---GFLFKTVEINT 455
             ++  + ++   PDI+T  IL +    A RI  DG   LE+++ +   G +  TV  NT
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRID-DG---LELFREMSLRGVIANTVTYNT 443


>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
          Length = 589

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G ++EA      M+   + P + ++N+++ G+   G+F +A     EM+     P +
Sbjct: 194 CRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNA 253

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            +Y  L+Q  G     DE       M+  GC+PD +TY  L+  F  AG + +       
Sbjct: 254 VSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDV 313

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
           M  + + + +   +    A+     L++  +  +R+   R P
Sbjct: 314 MAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCP 355



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 125 VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            F++ + +E+     N  +   ++  L   G ++EA+R F EM      P    Y +++ 
Sbjct: 237 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 296

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
            + K G+ ++   FL+ M    L   +  Y G   A+ K +  +E    ++ M+   C P
Sbjct: 297 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPP 356

Query: 243 DHITYNLLIQEFACA-GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
           D   YN++I+  AC  G  K+    +  M T  +     T   ++   +  G+L +   +
Sbjct: 357 DLSIYNVVIR-LACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGY 415

Query: 302 YKRLLN 307
           +K ++ 
Sbjct: 416 FKDMVG 421



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 38/266 (14%)

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           SL  Y ++++G+ ++GK +EA   L  MK   ++P    ++ L+  +     +++     
Sbjct: 182 SLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELA 241

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M+  GC P+ ++Y  L+Q     G +      +  M  K     S T   ++ A+   
Sbjct: 242 REMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKA 301

Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
           G + +  +F    + +R  L+ D     A VY+  ++            +   + +L  C
Sbjct: 302 GRISQGYEFLD--VMAREGLRVD-----AGVYLGFFV------------AHEKKEQLEEC 342

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           L L+                 M   +   +++  N+++    K+ + K    L +E+ T 
Sbjct: 343 LELMER---------------MRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETN 387

Query: 413 HVKPDIVTIGILYDARRIGFDGTGAL 438
            + P + T  I+      G  G G L
Sbjct: 388 ELSPGVDTFAIMV----TGLVGQGVL 409


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 24/258 (9%)

Query: 58   YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSS 117
            Y +  H   +VE Y E   +  +IQ + +   C +         T      V+R L N+ 
Sbjct: 1116 YMALIHCLEVVEQYGE---MWKMIQEMVRNPICVV---------TPTELSDVVRMLGNAK 1163

Query: 118  RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLE 175
              RQ   +F   K  +   I +  +  II ML  EG  E+  + + EM  EG    P   
Sbjct: 1164 MVRQAITIFYQIKTRKCQPIAQAYNSMII-MLMHEGQYEKVHQLYNEMSTEGHCF-PDTV 1221

Query: 176  IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
             Y+++I  + K+G+ + A+  LNEMKE+ + P +  Y  LI  + K+          + M
Sbjct: 1222 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281

Query: 236  KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF--- 292
            +   C PD  TY  LI+    AG +      +  M  +R   R  T+   ++  +NF   
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEM--QREGCRPDTV--FMNNMINFLGK 1337

Query: 293  -GMLDKMEKFYKRLLNSR 309
             G LD   K ++ +   R
Sbjct: 1338 AGRLDDAMKLFQEMETLR 1355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 112  FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
              ++ SR+ ++P  F+  K    S  + F    +I   C+   ME+A+   +EM+     
Sbjct: 1370 LFESKSRASEVPSWFERMKESGISP-SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFP 1428

Query: 172  PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDM 230
            P    Y S+I    K  +++ A     E+KE   S  +  Y  +I+  GK  ++ D I+M
Sbjct: 1429 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINM 1488

Query: 231  CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
              +M KL GC+PD   YN L+   A  G+L     T + M
Sbjct: 1489 FDEMNKL-GCAPDVYAYNALMSGLARTGMLDEALSTMRRM 1527



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 53/337 (15%)

Query: 136  RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
            R + F   ++I  L + G ++EA   F EM+    +P     N++I+   K G+ ++A+ 
Sbjct: 1287 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMK 1346

Query: 196  FLNEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
               EM+ +   P   TY+ +I+A  + K    E+    + MK  G SP   TY++LI  F
Sbjct: 1347 LFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGF 1406

Query: 255  ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
                 +++     + M  K      +   +++DA       D   + ++        LKE
Sbjct: 1407 CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE-------LKE 1459

Query: 315  DLVRKLAEVY---IKNY-----------MFSRLDDLG--------DDLASRIGRT----- 347
            +     A VY   IK+            MF  ++ LG        + L S + RT     
Sbjct: 1460 NCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 1519

Query: 348  ELVWCLRLLSHACLLS-----------------HRGIDSVVREMESAKVRWNVTTANIIL 390
             L    R+  H C+                   HR ++ ++  M+ + VR +V + N +L
Sbjct: 1520 ALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME-MLSNMKQSTVRPDVVSYNTVL 1578

Query: 391  LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             A      F+    L+ E+ T   + D++T   + +A
Sbjct: 1579 GALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEA 1615



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 77   LNALIQRLNKKVSCPL-QILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK- 134
            ++AL +     ++C L Q L+ +   +    +AV+  +K+  ++ ++    +M+  + K 
Sbjct: 1438 IDALGKAKRYDLACELFQELKENCGSSSARVYAVM--IKHLGKAGRLDDAINMFDEMNKL 1495

Query: 135  ---SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
                 +  +N+  ++  L   G+++EA+   + M+     P +  YN I++G +K G  +
Sbjct: 1496 GCAPDVYAYNA--LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 1553

Query: 192  EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
             A+  L+ MK+  + P   +Y+ ++ A     M++E    +K M   G   D ITY+ ++
Sbjct: 1554 RAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSIL 1613

Query: 252  Q 252
            +
Sbjct: 1614 E 1614


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 8/251 (3%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           +EEA   + EM+   LKP+   +N ++  YS+  + +     L EM++  L+P + +Y  
Sbjct: 97  IEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTC 156

Query: 215 LIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
           LI AYG+ K M D        MK  G  P   +Y  LI  ++ +G  ++   T+++M  +
Sbjct: 157 LISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFENMQRE 216

Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
            +     T   +LDA+   G    +   +K ++  +          L + + K   +   
Sbjct: 217 GIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEA 276

Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANII 389
            D+ ++   + G    V    +L +A   +  G DS    +++EM + K+  +  T   +
Sbjct: 277 RDVINEF-KKFGLHPTVMTYNMLMNA--YARGGQDSKLPQLLKEMATLKLEPDSITYTTM 333

Query: 390 LLAYLKMKDFK 400
           + AY++++DF+
Sbjct: 334 IYAYVRVRDFR 344



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 20/287 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EGL +EA+    EME   +  +  IYN+++  YSK  +  EA    +EM+   
Sbjct: 52  LIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKG 111

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P S T++ L+ AY +    D I+  L  M+  G +P+  +Y  LI  +     +  M 
Sbjct: 112 LKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMA 171

Query: 265 G-TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
              +  M    +   S +  A++ AY   G     EK Y    N    ++ + ++   E 
Sbjct: 172 ADAFLRMKKAGIKPTSYSYTALIHAYSVSGW---HEKAYITFEN----MQREGIKPSIET 224

Query: 324 YIKNYMFSRLDDLGDD----------LASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
           Y    +       GD           +  ++  T + + + L   A    +     V+ E
Sbjct: 225 YTT--LLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINE 282

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            +   +   V T N+++ AY +      L  LL E+ T  ++PD +T
Sbjct: 283 FKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLEPDSIT 329



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 118 RSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           R+     + D+WK      +E +R+  FN   ++    ++G   EA     E + F L P
Sbjct: 234 RAGDTKTLMDIWKLMMREKVEGTRVT-FNI--LLDGFAKQGHYMEARDVINEFKKFGLHP 290

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++  YN +++ Y++ G+ ++    L EM  + L P S TY  +I AY + + +       
Sbjct: 291 TVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYH 350

Query: 233 KMMKLDGCSPDHITYNLL 250
           KMM   G  PD  +Y  L
Sbjct: 351 KMMVKSGKVPDAKSYQKL 368



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  E+A   F+ M+   +KPS+E Y +++  + + G     +     M    +     T+
Sbjct: 201 GWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTF 260

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+  + K   Y E    +   K  G  P  +TYN+L+  +A  G   ++    K M T
Sbjct: 261 NILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMAT 320

Query: 273 KRMHLRSSTMVAILDAYM 290
            ++   S T   ++ AY+
Sbjct: 321 LKLEPDSITYTTMIYAYV 338



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA   F+ M    +K S E+  ++I  +   G   EAL+   EM+   +S  +  Y+ L
Sbjct: 28  KEAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTL 87

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           + +Y K    +E +     M+  G  P   T+N+L+  ++
Sbjct: 88  MDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYS 127



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 12/250 (4%)

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA  F   M    +    +    LI+++    +  E  +    M+  G S + I YN L+
Sbjct: 29  EAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLM 88

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
             ++ +  ++  EG Y  M  K +   S+T   ++DAY      D +EK    + ++   
Sbjct: 89  DSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLA 148

Query: 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI---GRTELVWCLRLLSHACLLS--HRG 366
                   L   Y +     ++ D+  D   R+   G     +    L HA  +S  H  
Sbjct: 149 PNAKSYTCLISAYGRQ---KKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEK 205

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                  M+   ++ ++ T   +L A+ +  D K L  +   +    V+   VT  IL D
Sbjct: 206 AYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILLD 265

Query: 427 ARRIGFDGTG 436
               GF   G
Sbjct: 266 ----GFAKQG 271


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 31/296 (10%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G +  A+    EME   L   +  YN+++ G    G++++A   L +M + +
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   T+  LI  + K    DE     K M      P+++TYN +I      G L   +
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
            T+  M +K       T   ++  +  F M+D+  K ++R+               A+++
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN---------ADIF 352

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLR------LLSHACLLSHRGIDSVVREMESAK 378
             N +      +G     R+      W +       +++H C+L H G+  V  E+ESA 
Sbjct: 353 TYNTLIHGYCQVGK---LRVALDIFCWMVSRRVTPDIITH-CILLH-GL-CVNGEIESAL 406

Query: 379 VRWN----------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           V+++          +   NI++    K    +    L   LP   VKPD  T  I+
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 133/325 (40%), Gaps = 19/325 (5%)

Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
           R L  ++  R+   V    + +E   I+   ++   +I   C    +  A+    +M   
Sbjct: 76  RLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKL 135

Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
             +PS+  + S++HG+  + +  +A   +  M +    P    Y+ LI    K     E+
Sbjct: 136 GYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK---NGEL 192

Query: 229 DMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           ++ L++   M+  G   D +TYN L+     +G         + M+ + ++    T  A+
Sbjct: 193 NIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG---DDLAS 342
           +D ++  G LD+ ++ YK ++ S           +        M  RL D     D +AS
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC---MHGRLYDAKKTFDLMAS 309

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYLKMKDF 399
           +     +V    L+S  C    R +D    + + M       ++ T N ++  Y ++   
Sbjct: 310 KGCFPNVVTYNTLISGFC--KFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKL 367

Query: 400 KHLRVLLSELPTRHVKPDIVTIGIL 424
           +    +   + +R V PDI+T  IL
Sbjct: 368 RVALDIFCWMVSRRVTPDIITHCIL 392



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 21/196 (10%)

Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
           +++K + +S +  N      II  LC  G + +A + F  M      P++  YN++I G+
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY---GKYKMYDEIDMCLKMMKLDGCS 241
            K    +E +     M     +    TY+ LI  Y   GK ++  +I  C  + +    +
Sbjct: 327 CKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI-FCWMVSRR--VT 383

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY--MNFGML--DK 297
           PD IT+ +L+           + G  +S L K   +R S     + AY  M  G+   DK
Sbjct: 384 PDIITHCILLHGLC-------VNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436

Query: 298 MEKFYKRLLNSRTPLK 313
           +EK ++  L  R P++
Sbjct: 437 VEKAWE--LFCRLPVE 450


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+   ++EA+  F+EM    + P +  YNS+I G  K GK + AL  ++EM +  
Sbjct: 342 MINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRG 401

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +     TY+ ++ A  K    D+    L  MK +G  PD  TY +LI      G LK  +
Sbjct: 402 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQ 461

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             ++ +L K  ++   T   ++  + +  + DK
Sbjct: 462 NIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDK 494



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 121/305 (39%), Gaps = 38/305 (12%)

Query: 126 FDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
           F ++ NI K     N      +I  LC +G + +A+    ++       +   Y ++I+G
Sbjct: 111 FSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLING 170

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             K+G+ + AL  L  +    + P    Y+ +I +  K K+ +E       M   G SPD
Sbjct: 171 LCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 230

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            +TY+ LI  F   G L    G +  M+++ ++    T   ++D +   G + + +    
Sbjct: 231 VVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLA 290

Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
            ++  +  +K D+V                                 +C  L+   CL+ 
Sbjct: 291 MMM--KQGIKPDVV--------------------------------TYC-SLMDGYCLVK 315

Query: 364 H-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
                 S+   M    V  NV + NI++  + K+K       L  E+  +++ PD+VT  
Sbjct: 316 QVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYN 375

Query: 423 ILYDA 427
            L D 
Sbjct: 376 SLIDG 380



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 52/107 (48%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+   +++A+    +M+   ++P +  Y  +I G  K G+  +A     ++    
Sbjct: 412 ILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG 471

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            +    TY  +IQ +    ++D+    L  M+ +GC P+  TY ++I
Sbjct: 472 YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG--FALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N      +I   C+ G + EA++ F+ +       +P++  +N++I G  K  +   A  
Sbjct: 209 NAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFE 268

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + +MK  +L   + TY  L+    K     E+    + M  +GC+P  +TY  L+    
Sbjct: 269 LVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHC 328

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            AG L+  +   +SM+ K +    +T   +L+     G +    +F++++L  R P
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCP 384



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 2/212 (0%)

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           N S + Q+ +V     +  +  +  FN+  +I  LC+   +E A    ++M+   L+   
Sbjct: 225 NLSEALQLFKVLSSRDHHAEPNVVTFNA--LISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y +++ G  K G+ +E      EM     +P   TY  L+ A+ K     +    ++ 
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M   G  PD  TY +L++     G ++     ++ +L +R    +    A++       +
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +D+  K+Y  +L+ R        + L E+  K
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 132/361 (36%), Gaps = 72/361 (19%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-------------------------------- 165
           N F    +I  LC+ G + EAV  + +M                                
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIF 61

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKY-- 222
            G    PS+   N +I+G+ ++   ++AL   +EM K   L P++ TY  +I+ Y K   
Sbjct: 62  RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDR 121

Query: 223 -----KMYDEIDMC---------------------------LKMMKLDGCSPDHITYNLL 250
                ++ +E   C                           L M++     PD + +N++
Sbjct: 122 LDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVI 181

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F  AG ++      +++++      + T   ++D +   G L +  + +K +L+SR 
Sbjct: 182 IHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK-VLSSRD 240

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLD---DLGDDLASRIGRTELVWCLRLLSHACLLSHRG- 366
              E  V     +        RL+   +L   + +R  R +      L+   C       
Sbjct: 241 HHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +  V  EM       +V T   ++ A+ K    +  + ++  +  + + PD+ T  +L +
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLE 360

Query: 427 A 427
            
Sbjct: 361 G 361


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             ++  LC+   M++A    ++M    + P    YN++I+GYS  G++ EA+    EM+ 
Sbjct: 260 SSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 319

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            ++ P     + L+ +  KY    E       M + G +PD  +Y +++  +A  G L  
Sbjct: 320 QSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVD 379

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           M   +  ML   +     T   ++ AY N GMLDK
Sbjct: 380 MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDK 414



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEME--GFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           F+   ++  LC +G   +A    + M   G    P +  YN++I G+ K G  N+A    
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM +  + P   TY  ++ A  K +  D+ +  L+ M   G  PD+ TYN LI  ++  
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 258 GLLKRMEGTYKSM 270
           G  K     +K M
Sbjct: 305 GQWKEAVRVFKEM 317



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G  +EAVR F+EM   ++ P +   N+++    K GK  EA    + M     +P   +Y
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 364

Query: 213 DGLIQAYG-KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
             ++  Y  K  + D  D+   +M  DG +P   T+N+LI+ +A  G+L +    +  M 
Sbjct: 365 TIMLNGYATKGCLVDMTDL-FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR 423

Query: 272 TKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLK 313
              +     T + ++ A    G M D MEKF + +     P K
Sbjct: 424 DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 114/289 (39%), Gaps = 13/289 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LC+ G + +A   F       L P   +YN ++ GY  +GK  +AL   + M    
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P    Y  L+  Y K    DE     + M   G  P  I YN++I     AG     +
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             +  M    + +   T   +L         D+    +K L      +K D++       
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKEL--RAMNVKIDIIT--LNTM 682

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE-------MESA 377
           I     +R  +   DL + I R+ LV C   ++++ ++++   + +V E       M++A
Sbjct: 683 IAGMFQTRRVEEAKDLFASISRSGLVPC--AVTYSIMITNLIKEGLVEEAEDMFSSMQNA 740

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
               +    N ++   LK  +       LS++  R+   + +T  +L D
Sbjct: 741 GCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVD 789



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 44/281 (15%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           +G + +    F  M G  + P +  +N +I  Y+  G  ++A++  NEM++  + P   T
Sbjct: 374 KGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVT 433

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  +I A  +    D+       M   G  PD   Y+ LIQ F           T+ S+L
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFC----------THGSLL 483

Query: 272 TKRMHLRSSTMVAILDAYMNFGM-LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
             +          ++   MN GM LD +  F+  ++N+        + KL  V     +F
Sbjct: 484 KAK---------ELISEIMNNGMRLDIV--FFGSIINN--------LCKLGRVMDAQNIF 524

Query: 331 SRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTA 386
                   DL   +G   + V    L+   CL+    ++  +R    M SA +  NV   
Sbjct: 525 --------DLTVNVGLHPDAVVYNMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNVVGY 574

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++  Y K+        L  E+  + +KP  +   I+ D 
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 615



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDG 214
           E A+  F ++    L+    I + ++ G+ +  + +EAL + L+   E+   P   +Y+ 
Sbjct: 130 ELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNI 189

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           L+++        + D  L+MM   G  CSPD + YN +I  F   G + +    +K M+ 
Sbjct: 190 LLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           + +     T  +++ A      +DK E F ++++N
Sbjct: 250 RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN 284



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           +EA+  F+E+    +K  +   N++I G  +  +  EA      +    L P + TY  +
Sbjct: 658 DEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIM 717

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME----GTYKSML 271
           I    K  + +E +     M+  GC PD    N +++E     LLK+ E    G Y S +
Sbjct: 718 ITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRE-----LLKKNEIVRAGAYLSKI 772

Query: 272 TKR-MHLRSSTMVAILDAYMNFGMLDKMEKF 301
            +R   L   T + ++D + + G   +  +F
Sbjct: 773 DERNFSLEHLTAMLLVDLFSSKGTCREQIRF 803


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN--EALLFLNEMKEMNLSPQSDT 211
           +++EA++ F+ ME + LKP +  +N +I    K  KF+  +A    ++M++ NL P   +
Sbjct: 169 VIKEALKTFERMEKYGLKPQISDFNKLIDVLCK-SKFHVEKAQELFDKMRQWNLEPNLKS 227

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y  LI+ + + +   ++D   + MK DG  PD +TY ++I  +  A       G Y  ML
Sbjct: 228 YTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDML 287

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           +K ++         +    N   +D+  +F+++   S  P +      +   Y  +    
Sbjct: 288 SKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSM--- 344

Query: 332 RLDD 335
           R+DD
Sbjct: 345 RIDD 348



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+    +EA+  + +M    + PS  IY + I G     + +EA  F  + K   
Sbjct: 266 IINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASG 325

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P++ TY+ ++ AY      D+    +  MK  G  P+  TY++++      G  K   
Sbjct: 326 FPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAY 385

Query: 265 GTYKSMLTKRMHLRSSTMVAIL 286
             ++ M ++     S +  AI+
Sbjct: 386 SVFQRMSSETGCEPSVSTYAIM 407


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 1/282 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      +I  LC + L+ EA+  F  M+   + P +  Y S+I G  K  ++ EA   L
Sbjct: 232 NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALL 291

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NEM  +N+ P   T++ L+  + K     E    LK M   G  P+ +TY+ L+  ++  
Sbjct: 292 NEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLW 351

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
             +      +  M+TK       +   +++ Y     +D+  + +  +++          
Sbjct: 352 TDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSY 411

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMES 376
             L   + +        DL  ++ +     +L     LL   C   + G    + R M+S
Sbjct: 412 NTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQS 471

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             ++ N+    I++ A  K  + K  R L SEL  + ++P +
Sbjct: 472 TYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHV 513



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++   C++G + +A R F+ M+   LKP+L +Y  ++H   K G   +A    +E
Sbjct: 444 FTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSE 503

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           +    L P    Y  +I    K  + DE     + M+ DGC PD I+YN++I+     GL
Sbjct: 504 LFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIR-----GL 558

Query: 260 LKRMEGTYKSMLTKRMHLRS 279
           L+  + +   +L   M  R 
Sbjct: 559 LQHKDESRALLLVGEMRDRG 578



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 54/108 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G   +AV  F +M     +P +  YN+II+G  KIG+   A   L +M+E  
Sbjct: 169 LINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG 228

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             P   TY  LI +  + ++ +E       MK  G SPD  TY  LIQ
Sbjct: 229 CQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 3/191 (1%)

Query: 81  IQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINE 139
           +QR++   S   ++++     T   F  +I  L       Q  ++FD M     +  +  
Sbjct: 141 LQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYT 200

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           +N+  II  LC+ G    A    ++ME    +P++  Y+++I    +    NEAL   + 
Sbjct: 201 YNT--IINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           MK   +SP   TY  LIQ   K+  + E    L  M      PD +T+N+L+  F   G 
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 260 LKRMEGTYKSM 270
           +    G  K+M
Sbjct: 319 VSEALGVLKTM 329



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 14/202 (6%)

Query: 126 FDMWKNIEKSR------------INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           + +W ++ ++R             N F+   +I   C+   ++EA++ F EM    L P+
Sbjct: 348 YSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPN 407

Query: 174 LEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
              YN++IHG+ ++GK  EA  LF N     NL P   TY  L+  + K     +     
Sbjct: 408 NVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNL-PDLFTYSILLDGFCKQGYLGKAFRLF 466

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
           + M+     P+ + Y +L+     +G  K     +  +  + +         I++     
Sbjct: 467 RAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKE 526

Query: 293 GMLDKMEKFYKRLLNSRTPLKE 314
           G+LD+  + ++ +     P  E
Sbjct: 527 GLLDEALEAFRNMEADGCPPDE 548



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 30/289 (10%)

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL-KMMKLDGCSPD 243
           S     ++AL   N M      P    +  L+ A  K   Y ++ + L K M+L G SP+
Sbjct: 68  SSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPN 127

Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
             T ++ +    C   L+R++  + S+L K + L     +      +N   L K+ +F +
Sbjct: 128 IYTLSIFMN---CFCQLQRVDLGF-SVLAKVIKLGLQPTIVTFTTLIN--GLCKVGEFAQ 181

Query: 304 RLLNSRTPLKEDLVRK--LAEVYIKNYMFSRLDDLGDDLASR--IGRTELVWCL-RLLSH 358
            +      L +D+V K    +VY  N + + L  +G+  A+   + + E   C   ++++
Sbjct: 182 AV-----ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTY 236

Query: 359 ACLLSHRGIDSVVRE-------MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
           + L+     D +V E       M++  +  ++ T   ++    K   +K    LL+E+ +
Sbjct: 237 STLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS 296

Query: 412 RHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
            ++ PDIVT  +L D     F   G  ++ + +G L    E+  +P V+
Sbjct: 297 LNIMPDIVTFNVLVDT----FCKEG--KVSEALGVLKTMTEMGVEPNVV 339



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
           ++ME   L P++   +  ++ + ++ + +     L ++ ++ L P   T+  LI    K 
Sbjct: 117 KQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKV 176

Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLI-------QEFACAGLLKRME--GTYKSMLT 272
             + +       M   GC PD  TYN +I       +  A AGLLK+ME  G   +M+T
Sbjct: 177 GEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVT 235


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 34/364 (9%)

Query: 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVR 160
           K H       + N  +  ++      +  +E   I  N F    +IG  C  G  ++  +
Sbjct: 262 KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQ 321

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
             ++M    + P++  ++++I    K GK  EA    NEM    + P + TY+ LI    
Sbjct: 322 LLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLC 381

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
             K  DE +  + +M   GC PD  TYN+LI  F  A   K+++   +  L ++M LR  
Sbjct: 382 NDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKA---KQVDDGMR--LFRKMSLRG- 435

Query: 281 TMVAILDAYMNFGMLDKMEKF--YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
            M+A    Y        ++ F   ++L+ ++   +E +V +     I  Y    LD L D
Sbjct: 436 -MIADTVTYSTL-----IQGFCQSRKLIVAKKVFQE-MVSQGVHPGIMTYAI-LLDGLCD 487

Query: 339 --DLASRIG--------RTEL-VWCLRLLSHACLLSHRGID--SVVREMESAKVRWNVTT 385
             +L   +G        + EL +    ++ H    +++  D  S+   + S  V+ ++ +
Sbjct: 488 NGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQS 547

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEM---WK 442
            NI+L    K         L  ++     +PD  T   L  A   G D T ++++    K
Sbjct: 548 YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMK 607

Query: 443 RIGF 446
           R GF
Sbjct: 608 RCGF 611



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N+F    I+  +C+ G    A+   ++ME   +KP +  Y  II    K G+ ++AL F 
Sbjct: 229 NQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFF 288

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           +EM+   +     TY+ LI ++  +  +D+    L+ M     +P+ +T++ LI      
Sbjct: 289 SEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKE 348

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300
           G L   +  Y  M+T+ +   + T  +++    N   LD+  +
Sbjct: 349 GKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQ 391



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 113/298 (37%), Gaps = 9/298 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC +  + EAV     M     +P+   Y  I++   K G    AL  L +M+   
Sbjct: 201 IVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRK 260

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  +I    K    D+       M+  G   +  TYN LI  F   G      
Sbjct: 261 IKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGA 320

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
              + M+T+++     T  A++D+ +  G L + +  Y  ++             L    
Sbjct: 321 QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGL 380

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW--- 381
             +      + + D + S+ G    +W   +L +      + +D  +R      +R    
Sbjct: 381 CNDKRLDEANQMMDLMVSK-GCDPDIWTYNILING-FCKAKQVDDGMRLFRKMSLRGMIA 438

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
           +  T + ++  + + +     + +  E+ ++ V P I+T  IL D    G    G LE
Sbjct: 439 DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLD----GLCDNGELE 492



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/309 (18%), Positives = 119/309 (38%), Gaps = 42/309 (13%)

Query: 117 SRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +R++Q   V  + K +E   I  + +    +I   C    +  A  A  ++     +P+ 
Sbjct: 101 ARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNT 160

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-KYKMYDEIDMCLK 233
             +N++++G    G+  EA+  ++ M      P   T + ++     K ++ + +D+  +
Sbjct: 161 VTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIAR 220

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           MM  +GC P+  TY  ++     +G         + M  +++     T   I+D     G
Sbjct: 221 MMA-NGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDG 279

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGRTELVW 351
            LD    F+  +               A V+  N +       G  DD A          
Sbjct: 280 RLDDALSFFSEMETKGIK---------ANVFTYNSLIGSFCSFGRWDDGA---------- 320

Query: 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
                             ++R+M + K+  NV T + ++ + +K       + L +E+ T
Sbjct: 321 -----------------QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMIT 363

Query: 412 RHVKPDIVT 420
           R ++P+ +T
Sbjct: 364 RGIEPNTIT 372


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  L + G  ++A++   EM+G  LKP +  Y++++ G S+ GK +EA+ F ++++EM 
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
           + P + TY+ ++    K +        L  M   GC P   +Y +LI+  A  GL K
Sbjct: 523 VKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAK 579



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 66  LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQV 125
           +L+  Y +   + + +Q L++    P  +           +  ++R L +S + ++  +V
Sbjct: 185 VLISGYCKTGEIGSALQLLDRMSVSPDVVT----------YNTILRTLCDSGKLKEAMEV 234

Query: 126 FDMWKNIEKSRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
            D  + +++    +  +  I I   C+E  + +A++   EM     KP +  YN +I+G 
Sbjct: 235 LD--RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGI 292

Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
            K G+ +EA+ FLN M      P   T++ ++++      + + +  L  M   GCSP  
Sbjct: 293 CKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSV 352

Query: 245 ITYNLLIQEFACAGLLKR 262
           +T+N+LI      GL+ R
Sbjct: 353 VTFNILINFLCRKGLIGR 370



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC++G ++ AV    ++      P L  YN++I G SK+GK ++A+  L+EMK   L P 
Sbjct: 432 LCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPD 491

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
             TY  L+    +    DE       ++  G  P+ ITYN
Sbjct: 492 IITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYN 531



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 9/285 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  LC+ G ++EA+            P +  Y  +I    K     +A+  L+EM++  
Sbjct: 218 ILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKG 277

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY+ LI    K    DE    L  M   GC P+ IT+N++++     G     E
Sbjct: 278 CKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAE 337

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNF----GMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
                M+ K      S  V   +  +NF    G++ +     +++              L
Sbjct: 338 KFLAEMIRK----GCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL 393

Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMESAKV 379
                K+    R  +  D + SR    ++V    LL+  C      +   ++ ++ S   
Sbjct: 394 LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              + T N ++    K+        LL E+  + +KPDI+T   L
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTL 498



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 54/121 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N  +   ++  LC++  ME A+     M      P +  YN+++    K GK + A+  L
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           N++     SP   TY+ +I    K    D+    L  MK  G  PD ITY+ L+   +  
Sbjct: 446 NQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSRE 505

Query: 258 G 258
           G
Sbjct: 506 G 506



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G   +A R  + +E     P +  YN +I GY K G+   AL  L+    M+
Sbjct: 151 LIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLD---RMS 207

Query: 205 LSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           +SP   TY+ +++      K+ + +++  + M+ + C PD ITY +LI+
Sbjct: 208 VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE-CYPDVITYTILIE 255


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG--FALKPSLEIYNSIIHGYSKIGKFNEALL 195
           N      +I   C+ G + EA++ F+ +       +P++  +N++I G  K  +   A  
Sbjct: 209 NAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFE 268

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
            + +MK  +L   + TY  L+    K     E+    + M  +GC+P  +TY  L+    
Sbjct: 269 LVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHC 328

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
            AG L+  +   +SM+ K +    +T   +L+     G +    +F++++L  R P
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCP 384



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 2/212 (0%)

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           N S + Q+ +V     +  +  +  FN+  +I  LC+   +E A    ++M+   L+   
Sbjct: 225 NLSEALQLFKVLSSRDHHAEPNVVTFNA--LISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             Y +++ G  K G+ +E      EM     +P   TY  L+ A+ K     +    ++ 
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           M   G  PD  TY +L++     G ++     ++ +L +R    +    A++       +
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
           +D+  K+Y  +L+ R        + L E+  K
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 132/361 (36%), Gaps = 72/361 (19%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM-------------------------------- 165
           N F    +I  LC+ G + EAV  + +M                                
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIF 61

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKY-- 222
            G    PS+   N +I+G+ ++   ++AL   +EM K   L P++ TY  +I+ Y K   
Sbjct: 62  RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDR 121

Query: 223 -----KMYDEIDMC---------------------------LKMMKLDGCSPDHITYNLL 250
                ++ +E   C                           L M++     PD + +N++
Sbjct: 122 LDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVI 181

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
           I  F  AG ++      +++++      + T   ++D +   G L +  + +K +L+SR 
Sbjct: 182 IHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK-VLSSRD 240

Query: 311 PLKEDLVRKLAEVYIKNYMFSRLD---DLGDDLASRIGRTELVWCLRLLSHACLLSHRG- 366
              E  V     +        RL+   +L   + +R  R +      L+   C       
Sbjct: 241 HHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           +  V  EM       +V T   ++ A+ K    +  + ++  +  + + PD+ T  +L +
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLE 360

Query: 427 A 427
            
Sbjct: 361 G 361


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 117 SRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           +R       F +W+++     K  I  +N   ++   C+ G M++A+   + ++   L P
Sbjct: 352 ARGGDFTAAFKVWEDMVSAGLKPDIVTYNI--LVHAFCKAGRMDKALGVLENIQANRLLP 409

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           ++E Y SI+ GY K G   +AL   + +K   L P   +Y+ L+    K +  +   + L
Sbjct: 410 TIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 469

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M  +G  P+  +Y  L + +A AG +++  G ++ M  + + +      A+L A    
Sbjct: 470 DEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 529

Query: 293 GMLDKMEKFYKRLLNS 308
           G + +  + ++++ ++
Sbjct: 530 GAMQRAVEVFQQITDA 545



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 12/294 (4%)

Query: 158 AVRA-FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
           A RA F+ M    +KP++ IY S+IH Y++      A+    EM    +      +  +I
Sbjct: 149 AARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSII 208

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
             Y      +  +   +  K +   P  I YN ++Q +  AG ++ +E     M  +   
Sbjct: 209 SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQ 268

Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-NYMFSRLDD 335
                   +L+ +      +K   F+ RL              + +++ K   M   LD 
Sbjct: 269 GNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDI 328

Query: 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGID-----SVVREMESAKVRWNVTTANIIL 390
           L +     +   ++++ + +  +A     RG D      V  +M SA ++ ++ T NI++
Sbjct: 329 LEEMDKHGVSPNKMIYAMIMDGYA-----RGGDFTAAFKVWEDMVSAGLKPDIVTYNILV 383

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
            A+ K         +L  +    + P I T   + D    G     ALE++ RI
Sbjct: 384 HAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRI 437


>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 162 FQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
           F++M+G    KP++  YN +   +++  K ++      ++ E  +S    TY+G++ AYG
Sbjct: 189 FEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYG 248

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
           K     E+++ L  MK +   PD I++NLLI  +    L  +ME  +KS+L  +      
Sbjct: 249 KNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLP 308

Query: 281 TMVAILDAYMNFGMLDKMEKFYKRL 305
           T  +++  Y    + +K E+ ++++
Sbjct: 309 TFNSMITNYGKARLREKAEEVFRKM 333



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 28/301 (9%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNE 199
           K+I ++ ++G +  A+  F EM     +P   +YN++I    H   K     + L +  +
Sbjct: 132 KLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEK 191

Query: 200 MKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           MK M    P   TY+ L +A+ +    D+++   K +     S D  TYN ++  +   G
Sbjct: 192 MKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNG 251

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT----PLKE 314
            +K ME     M + ++     +   ++D+Y    + DKME+ +K LL S+     P   
Sbjct: 252 NIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFN 311

Query: 315 DLVRKLAEVYIKNY---MFSRLDDLGDDLASRIGRTELVWCLRLL---SHA-CLLSHRGI 367
            ++    +  ++     +F ++ D+G D +        V C  L+    H  C+   R I
Sbjct: 312 SMITNYGKARLREKAEEVFRKMKDMGYDPS-------YVTCESLIMMYGHCDCVSKAREI 364

Query: 368 -DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            D +V   +  +    V+T N +L  Y          +L        V PD  T  +LY 
Sbjct: 365 FDGMVNSGKEVR----VSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYK 420

Query: 427 A 427
           A
Sbjct: 421 A 421



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 89/202 (44%)

Query: 126 FDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           F+  K +E+ + N      +     +   +++    F++++   +   +  YN ++  Y 
Sbjct: 189 FEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYG 248

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
           K G   E  L L  MK   + P   +++ LI +YGK +++D+++   K +      P   
Sbjct: 249 KNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLP 308

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           T+N +I  +  A L ++ E  ++ M          T  +++  Y +   + K  + +  +
Sbjct: 309 TFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGM 368

Query: 306 LNSRTPLKEDLVRKLAEVYIKN 327
           +NS   ++   +  + +VY  N
Sbjct: 369 VNSGKEVRVSTLNAMLDVYCIN 390



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK-----MYDEIDM 230
           +Y+ +I    K G+   A+   +EM+     P +  Y+ LI A+   K     +   +  
Sbjct: 129 VYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSY 188

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
             KM  ++ C P+ +TYN+L + FA A  + ++   +K +    +     T   ++DAY 
Sbjct: 189 FEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYG 248

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDL 336
             G + +ME    R+ +++  +K D++    L + Y K  +F +++ +
Sbjct: 249 KNGNIKEMELMLARMKSNQ--IKPDIISFNLLIDSYGKKQLFDKMEQV 294



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 81/175 (46%), Gaps = 2/175 (1%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           +++ ++ QV  ++K++++S ++   +    ++    + G ++E       M+   +KP +
Sbjct: 213 AQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDI 272

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             +N +I  Y K   F++       +      P   T++ +I  YGK ++ ++ +   + 
Sbjct: 273 ISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRK 332

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
           MK  G  P ++T   LI  +     + +    +  M+     +R ST+ A+LD Y
Sbjct: 333 MKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVY 387



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 70/136 (51%), Gaps = 14/136 (10%)

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           ++++ ++++ + V  ++ T N ++ AY K  + K + ++L+ + +  +KPDI++  +L D
Sbjct: 221 VNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLID 280

Query: 427 ARRIGFDGTGALEMWKRIGFLFKTV----EINTDPL---VLAVYGKGHFLRYCEEVYSSL 479
           +        G  +++ ++  +FK++    E  T P    ++  YGK       EEV+  +
Sbjct: 281 S-------YGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKM 333

Query: 480 EPYSREKKRWTYQNLI 495
           +    +    T ++LI
Sbjct: 334 KDMGYDPSYVTCESLI 349


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +  F    ++  LC+    EEA+   ++M      P+L  Y S++ G+ K+G+ +EALL 
Sbjct: 252 LTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ 311

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L E  E    P + TY  +I    K    +E       M+  G  PD +TY  LI  F  
Sbjct: 312 LKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMK 371

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
           A ++ +    Y+ ML     + + T   ILD     G
Sbjct: 372 AKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 408



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           I F+K  S  R  P +F     ++             G L + G ++EA+   +E     
Sbjct: 274 IAFVKKMSERRCFPTLFTYTSLVD-------------GFL-KLGRLDEALLQLKEAVERG 319

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P    Y SII G  K+G+  E     +EM+     P + TY  LI  + K KM  +  
Sbjct: 320 FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAH 379

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
              + M   G     +TYN+++     AG +     T+ +M  +       T  A++D +
Sbjct: 380 RVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 439

Query: 290 MNFGMLDKMEKFYKRLLN 307
            + G +    + ++R+L+
Sbjct: 440 CSEGNVSAAVELFRRMLD 457



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +E+A+  F E++  +L  +   +N ++    K  +  EA+ F+ +M E  
Sbjct: 226 VIRQLCASGNLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERR 284

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P   TY  L+  + K    DE  + LK     G  PD +TY  +I      G ++   
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 344

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
             +  M  +     + T  A++D +M   M+ K  + Y+++L S T
Sbjct: 345 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGT 390



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
           F+    ++ ++   F + K +++ +          ++  L + G ++EA+   ++M    
Sbjct: 82  FIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKG 141

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P+L+ Y  +I G SK G+  EA     +M      P +  Y  LI    K    DE  
Sbjct: 142 NSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEAL 201

Query: 230 MCLKMMKLDGCS----PDHITYNLLIQEFACAGLLK 261
           + L  M  +GC+    PD + +NL+I++   +G L+
Sbjct: 202 VYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLE 237



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 61/153 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC E  ++EA    +       +P    YN  I G  K  + ++A   L +M E  
Sbjct: 47  VINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKK 106

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             P + TY  L+    K    DE    L+ M   G SP   TY ++I   + AG ++   
Sbjct: 107 CLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEAR 166

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
             +  ML       +    A++      G LD+
Sbjct: 167 RIFVDMLGNGCRPDAFVYTALISGLAKIGKLDE 199



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 3/177 (1%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I++  ++      ++  LC+ G ++ A+    EM      P +  +  +I+G  +  + +
Sbjct: 2   IDRKLVDTRVCTALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLD 58

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           EA   L         P   TY+  I    K +  D+    LK M    C P  +TY  L+
Sbjct: 59  EAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALV 118

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
                AG L       + M+ K       T   ++D     G +++  + +  +L +
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGN 175



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           +C  G +E  +  F EM    + P + ++N++I      G+ +EAL    E+ E   +P 
Sbjct: 545 ICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPD 603

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           + +Y  L+ A  + +  +E  +    MKL GC+P H  Y+L ++
Sbjct: 604 AWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPRH--YDLTVR 645


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 17/283 (6%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +GL+  A++   EM      P +  YN +I+G  K+G  ++A + +N+       P 
Sbjct: 299 LCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
             T++ +I  Y K    D     ++ M + G +PD ITYN ++     AG  K +  T++
Sbjct: 359 VFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFE 418

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
            M+ K     + T   +++ +     L++      R+  S+  L  D +    L   + +
Sbjct: 419 EMILKGCRPNAITYNILIENFCKINQLEEASGVIVRM--SQDGLVPDTISFNTLIHGFCR 476

Query: 327 N-------YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           N        +F +LD+ G         T   + + + +++  L+ +  + +  EM S   
Sbjct: 477 NGDLDGAYLLFQKLDEKG------YSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGY 530

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           + ++ T  +++    K  +     V L+E+ ++   P + T G
Sbjct: 531 KPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFG 573



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           +N+F     I  LCE G +EEAV   + M+ + + P +  YN+++ G  K  K  EA  +
Sbjct: 148 VNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQY 206

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           L  M      P   TY+ +I  Y K  M  E    LK     G  PD +TY  LI     
Sbjct: 207 LRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCA 266

Query: 257 AGLLKR 262
            G ++R
Sbjct: 267 EGDVER 272



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC+ G + +A     +       P +  +N++I GY K  K + AL  +  M    
Sbjct: 330 VINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYG 389

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P + TY+ ++    K     E++   + M L GC P+ ITYN+LI+ F     L+   
Sbjct: 390 IAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEAS 449

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           G    M    +   + +   ++  +   G LD     +++L
Sbjct: 450 GVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKL 490



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    +I   C+   ++ A++  + M  + + P    YNS+++G  K GK  E      E
Sbjct: 360 FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEE 419

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M      P + TY+ LI+ + K    +E    +  M  DG  PD I++N LI  F   G 
Sbjct: 420 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGD 479

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           L      ++ +  K     + T   ++ AY +   +   EK +  +++
Sbjct: 480 LDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 527



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 21/232 (9%)

Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
           +V+  L  + +++++ + F+    ++  R N      +I   C+   +EEA      M  
Sbjct: 399 SVLNGLCKAGKAKEVNETFEEMI-LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQ 457

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
             L P    +N++IHG+ + G  + A L   ++ E   S  +DT++ LI AY        
Sbjct: 458 DGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQM 517

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQ----------------EFACAGLLKRMEGTYKSML 271
            +     M   G  PD  TY +L+                 E    G +  M    + + 
Sbjct: 518 AEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLN 577

Query: 272 TKRMHLRSSTMVAILDAYMNFG----MLDKMEKFYKRLLNSRTPLKEDLVRK 319
           +  M+ R S  VAI+   +  G    ++D +    K+ + +   L E+L++K
Sbjct: 578 SLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILSTDKKEIAAPKILVEELMKK 629



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 136/360 (37%), Gaps = 36/360 (10%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           ++F    II   C+  +++EA    ++       P    Y S+I+G    G    AL   
Sbjct: 218 DDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELF 277

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           NE +  +L P    Y+ L++   +  +       +  M  DGC PD  TYN++I      
Sbjct: 278 NEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVIN----- 332

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           GL K             M   S   V + DA +  G L  +  F   +      LK D  
Sbjct: 333 GLCK-------------MGNISDAAVVMNDAIVK-GYLPDVFTFNTMIDGYCKRLKLDSA 378

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376
            +L E   + +M+    D              +    +L+  C     + ++    EM  
Sbjct: 379 LQLVE---RMWMYGIAPD-------------AITYNSVLNGLCKAGKAKEVNETFEEMIL 422

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
              R N  T NI++  + K+   +    ++  +    + PD ++   L        D  G
Sbjct: 423 KGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDG 482

Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           A  +++++     +   +T  +++  Y     ++  E+++  +     +   +TY+ L+D
Sbjct: 483 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVD 542


>gi|242039357|ref|XP_002467073.1| hypothetical protein SORBIDRAFT_01g019180 [Sorghum bicolor]
 gi|241920927|gb|EER94071.1| hypothetical protein SORBIDRAFT_01g019180 [Sorghum bicolor]
          Length = 808

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 141/359 (39%), Gaps = 39/359 (10%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  ++  LC  G +++A   F  M  + L PS   Y++IIHG  KIG  +EA      
Sbjct: 254 FNT--LMSALCNWGFIQDAKSVFCLMLKYGLNPSRHTYSTIIHGLCKIGSVSEAFNIFQS 311

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           + E  +     T + LI  +  +    EI   ++MM+  G  PD +TY +LI      G 
Sbjct: 312 VTEEGMELDIVTCNSLINGFRLHGHTREIPKMIEMMRGLGVEPDIVTYTILIAGHCEGGD 371

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           ++      K +L + M L   T   +++A    G+  ++E     + +    L+ D++  
Sbjct: 372 VEEGMKIRKDILGQGMELNIVTYSVLINALFKKGLFYEVENLLGEICS--VGLELDVIAY 429

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
              + I  Y  S+L +        IGR   VW L   S                      
Sbjct: 430 --SILIHGY--SKLGE--------IGRALQVWNLMCSSQ--------------------- 456

Query: 380 RWNVTTAN--IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
           R   T+ N   ILL   K       R  L  + +++   D+V   ++ D      D   A
Sbjct: 457 RVTPTSVNHVSILLGLCKKGFLDEARSYLETIASKYQPSDVVLYNVVIDGYAKVGDIGNA 516

Query: 438 LEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
           ++++  I        I T   +L  Y K   L   E  +++++         TY  L+D
Sbjct: 517 VQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFTAIQLSDLLPTTVTYTTLMD 575



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L E G +   +  F+EM G  +KP+   Y+ +I G  K   F++A   L++M        
Sbjct: 577 LSEAGKVHSMLSLFKEMTGKGIKPNAVTYSVVIKGLCKQFMFHDAKNVLDDMCIEGFDAD 636

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
              Y+ LIQ + + +         ++M   G  P  +TYNLL+      GL+   E   +
Sbjct: 637 PIPYNTLIQGFCETQDAKNAFGVYELMVFRGVMPTPVTYNLLVNVLCSKGLVIHAEMQLE 696

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
           S   +   LR    + ++ A    GM  K   ++ +LL++
Sbjct: 697 SFRKQGAKLRKFAYITLIKAQCAKGMPYKAIMWFGKLLDA 736



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIH 182
           QV+++  + ++      N   I+  LC++G ++EA R++ E      +PS + +YN +I 
Sbjct: 447 QVWNLMCSSQRVTPTSVNHVSILLGLCKKGFLDEA-RSYLETIASKYQPSDVVLYNVVID 505

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY+K+G    A+   + +    + P   T + L+  Y K+      +     ++L    P
Sbjct: 506 GYAKVGDIGNAVQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFTAIQLSDLLP 565

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             +TY  L+   + AG +  M   +K M  K +   + T   ++
Sbjct: 566 TTVTYTTLMDALSEAGKVHSMLSLFKEMTGKGIKPNAVTYSVVI 609



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +  A   F  ++   L P+   Y +++   S+ GK +  L    EM    + P +
Sbjct: 543 CKFGDLHMAESYFTAIQLSDLLPTTVTYTTLMDALSEAGKVHSMLSLFKEMTGKGIKPNA 602

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  +I+   K  M+ +    L  M ++G   D I YN LIQ F      K   G Y+ 
Sbjct: 603 VTYSVVIKGLCKQFMFHDAKNVLDDMCIEGFDADPIPYNTLIQGFCETQDAKNAFGVYEL 662

Query: 270 ML 271
           M+
Sbjct: 663 MV 664



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLI 216
           A+  F+EME   + PS   ++ +I G  K  K  EAL FL E+ KE    P   T++ L+
Sbjct: 199 ALEIFKEMESCGIPPSDYSHSILIDGLCKQDKIGEALSFLQEIRKEGKFIPLGMTFNTLM 258

Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
            A   +    +      +M   G +P   TY+ +I      G +      ++S+  + M 
Sbjct: 259 SALCNWGFIQDAKSVFCLMLKYGLNPSRHTYSTIIHGLCKIGSVSEAFNIFQSVTEEGME 318

Query: 277 LRSSTMVAILDAY 289
           L   T  ++++ +
Sbjct: 319 LDIVTCNSLINGF 331



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 49/100 (49%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +  AV+ +  +    + P++   NS+++GY K G  + A  +   ++  +L P + TY
Sbjct: 511 GDIGNAVQLYDAIIMAGMCPTIVTCNSLLYGYCKFGDLHMAESYFTAIQLSDLLPTTVTY 570

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
             L+ A  +      +    K M   G  P+ +TY+++I+
Sbjct: 571 TTLMDALSEAGKVHSMLSLFKEMTGKGIKPNAVTYSVVIK 610


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + KNS+ +  +    +M +    + +  +NS  +I  LC EG +EE V+  +EME   L 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNS--LISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+   +  ++ G+ K G   +A  +++ M E N+ P    Y+ LI  Y +    ++    
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M   G SP+  TYN LI  F+ +G  +   G    M  K +     T   ++ A   
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 292 FGMLDKMEKF 301
            G + K  K 
Sbjct: 452 KGEVRKAVKL 461



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 39/294 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-- 194
           I  FN+  +I  LC  G + +A    ++++ + L PS+  YNS+I GY K G        
Sbjct: 191 IYTFNT--VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 195 -LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + L EM E  +SP + T+  LI  Y K           + MK  G +   +TYN LI  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G ++      + M    +     T   +L  +   GM+     +   +        
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE-- 366

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
                   +V I N +         D+  R+G+ E                    +V   
Sbjct: 367 -------PDVVIYNILI--------DVYRRLGKMEDAM-----------------AVKEA 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           M    +  NVTT N ++  + +  D++    LL E+  + ++ D+VT  +L  A
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ME+A+   + M    + P++  YN +I G+S+ G +  A   L+EMKE  +     TY
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI A        +    L  M   G  P+H+TYN +IQ F   G +K        M  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            R      T    +  +   G +D+       +L+
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC +G + +AV+   EM    L+P+   YN+II G+   G    A      M++  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNLL 250
                 TY+  I+ + +    DE +  L  M LD C  P+ ITY  +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEM-LDKCLVPNGITYETI 550


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I  L +EG +  A + F+EM    L P+   YN++I G+   G   EAL   
Sbjct: 283 NEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLC 342

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M    L P   TY  L+    K+  +  +   L+ M++DG    HI+Y  +I      
Sbjct: 343 DVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKN 402

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
           GLL+        ML   +     T   +++ ++  G++
Sbjct: 403 GLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLV 440



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 18/170 (10%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           ++  R+   +   +I  LC+ GL+EEAV+   +M   ++ P +  ++ +++G+ K G   
Sbjct: 382 MDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTG--- 438

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
                        L P    +  LI  Y K     E      +M   G   DH T ++L+
Sbjct: 439 -------------LVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLV 485

Query: 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
             F   G L+  E     M    +   S T   I+D Y N G  D ++ F
Sbjct: 486 ASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSG--DALKAF 533



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           F    ++G L ++  ++     F+EM    + P++  +N +++   + GKF  A + L +
Sbjct: 145 FTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRK 204

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           M E    P + TY+ L+  Y K   Y      +  M   G + D  TYN+LI + 
Sbjct: 205 MDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYNVLIDDL 259



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 1/169 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           + F    +I  LC +G M  A+  + + +E   L P+  +Y S++ G  K G    AL  
Sbjct: 617 DSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYM 676

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +M    + P +  ++ L+  Y +     +++  L  M+      +  TYN+L+  ++ 
Sbjct: 677 FEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSK 736

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
              + R    Y  M+         T  +++  Y   G LD   KF +++
Sbjct: 737 RHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKI 785



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           + + +P +    + IEK  +  N      ++  L +EG  + A+  F++M    ++P   
Sbjct: 631 KGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAI 690

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            +N ++  YS+ GK ++    L+ M+  +L     TY+ L+  Y K             M
Sbjct: 691 AFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEM 750

Query: 236 KLDGCSPDHITYNLLIQEFACAGLL 260
            + G +PD +T++ LI  +  +G L
Sbjct: 751 IIHGFAPDRLTWHSLILGYCKSGSL 775



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           +E  +++ F    ++  LCE   ++ A    +++    + P+++ YNS+ +G+ +   F+
Sbjct: 787 VEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFD 846

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDH 244
           EA   L+ + E   +P    +  LI+         G  ++ DE       MK+ G S   
Sbjct: 847 EARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDE-------MKILGVSSQG 899

Query: 245 ITYNLLIQEFA 255
           +  + +I+  A
Sbjct: 900 VAMSAIIRGLA 910



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC +    +     + M    + P+   YN++I+G  K GK   A     EM   N
Sbjct: 255 LIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCN 314

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P S TY+ LI  +      +E      +M   G  P+ +TY  L+      G+ K  +
Sbjct: 315 LLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGALLN-----GISKHAQ 369

Query: 265 GTYKSMLTKRM--------HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
               S + +RM        H+  +TM+   D     G+L++  +    +L  +  +  D+
Sbjct: 370 FGLVSSVLERMRMDGVRVGHISYTTMI---DGLCKNGLLEEAVQLLDDML--KVSVSPDI 424

Query: 317 V 317
           V
Sbjct: 425 V 425



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQSD 210
            G +  AV    EM      P    Y S+I G  + GK   ALL      E  L SP   
Sbjct: 596 SGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPA 655

Query: 211 TY----DGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            Y    DGL+ + + K  +Y   DM       +G  PD I +N+L+  ++  G + ++  
Sbjct: 656 MYTSLVDGLLKEGHSKAALYMFEDMLN-----EGVQPDAIAFNVLLDRYSRKGKMSKVND 710

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
              +M ++ +    +T   +L  Y     + +  K Y  ++
Sbjct: 711 ILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMI 751



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 16/165 (9%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VFD+                +I +   E ++ +AV AF+ M      PS+   N ++ 
Sbjct: 109 PAVFDL----------------LIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLG 152

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              K  + +    F  EM    +SP   T++ L+ A  +   +    + L+ M   G  P
Sbjct: 153 SLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFP 212

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
             +TYN L+  +   G  K       +M +K +     T   ++D
Sbjct: 213 TAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYNVLID 257


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 6/292 (2%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N      II   C+ G ++ A+   + ME    +P+   YNS+++G  K  K ++A+  L
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M++  + P   TY  L+Q       +D      +MM+ +G  PD   Y +L      A
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
           G   R E  Y  ++ K + L       ++D +   G  D      +R+++          
Sbjct: 581 G---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREME 375
             L     K    +    + D ++ R G    ++   +L    L    H     +  EM 
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLR-GIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           S+  + + TT  + + +Y K    +    L+ ++    V PD+VT  IL D 
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 121/288 (42%), Gaps = 2/288 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE++   +I  LC+   + +A+  F  M+     P++  +  +I G  K G+  +A L  
Sbjct: 252 NEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF 311

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           + M +  + P   TY+ +I  Y K    ++     ++M+ +GC PD  TYN LI    C 
Sbjct: 312 DAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL-CD 370

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
              +  E    + + +       T   +++ Y      D   +   ++++S+  L   + 
Sbjct: 371 QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVF 430

Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID-SVVREMES 376
            KL    IK        +L +++++      ++    ++   C      I   V++ ME 
Sbjct: 431 GKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMER 490

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
              + N  T N ++   +K K       LL+++    + P+++T   L
Sbjct: 491 DGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTL 538



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
            + M    L P++  Y+S+I G+ K G+  EA L L+ M    LSP  D Y  LI+    
Sbjct: 813 LERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 872

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
            K +++    + +M   G  P   +Y LL+      G  ++++  +  +L
Sbjct: 873 TKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLL 922



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 114/286 (39%), Gaps = 6/286 (2%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+EG +  A R F+ +    L+P     N+++ GY + G+  +A      M  M 
Sbjct: 189 MIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMG 248

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
                 +Y  LIQ     K   +  +   MMK DGCSP+   +  LI     +G +    
Sbjct: 249 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             + +M    +     T  A++  Y   G ++   K  K L+       +D         
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI-KELMEKNGCHPDDWTYNTLIYG 367

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRW 381
           + +      ++L ++         +V    L++  C+      D  +R   +M S+K + 
Sbjct: 368 LCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK--FDDALRMKNKMMSSKCKL 425

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++     ++ + +K    K  + LL+E+    + P+++T   + D 
Sbjct: 426 DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G +EEA      M G  L P+ +IY  +I        F +AL F++ M E  
Sbjct: 831 LIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECG 890

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG------ 258
             PQ ++Y  L+        ++++      +   G + D + + +L      AG      
Sbjct: 891 FQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICF 950

Query: 259 -LLKRMEGTY-------KSMLTKRMHLRSSTMVA 284
            +L  ME  Y        +++T +MH  SS++V+
Sbjct: 951 QMLSIMEKRYCCISSQTYALVTNKMHEVSSSLVS 984



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 45/103 (43%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R + ++    L P    YN++I  Y K G    A  +   + E  L P++ T + L+  Y
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 228

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
            +     +      MM L GC  +  +Y +LIQ    A  +++
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRK 271


>gi|293334337|ref|NP_001169631.1| uncharacterized protein LOC100383512 [Zea mays]
 gi|224030539|gb|ACN34345.1| unknown [Zea mays]
 gi|413953501|gb|AFW86150.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
          Length = 790

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 124 QVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +V  +WK +    +  N+F    +IG L +E L+EEAV  F EM      P    Y+ +I
Sbjct: 261 KVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGEMRRRRFVPEEATYSLLI 320

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
              S+ GK  +AL    EMK   ++P + T   L+  + K + Y +       M+     
Sbjct: 321 SASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNEDYPKALALFSDMESSKVI 380

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
           PD + Y +LI+ +   GL +    T+  +    +     T VA+   ++N G  D+
Sbjct: 381 PDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGDCDR 436



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 125/326 (38%), Gaps = 44/326 (13%)

Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           +  D++  + + R    E     +I      G  E+A+R F+EM+G  + PS     S++
Sbjct: 296 EAVDLFGEMRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLL 355

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             + K   + +AL   ++M+   + P    Y  LI+ YGK  +Y+E       ++  G  
Sbjct: 356 ALHCKNEDYPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLL 415

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-------------RMHLRSSTMVAILDA 288
            D  TY  + Q    AG   R     +SM T+             R H+    +VA  D 
Sbjct: 416 NDEQTYVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDVVAAEDT 475

Query: 289 -----------------------YMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVY 324
                                  YM  G LDK       LL      L E+L   + E Y
Sbjct: 476 FRALSQSQHGLPDAFCCNDMLRLYMRLGRLDKARALVSVLLREDGFQLDENLSTTVMEFY 535

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
            K+ M    + L +D+  R  +   V  L LL     +  R   SVV E  S+      +
Sbjct: 536 CKSGMVEDAEKLLEDI-QRNRKPVKVPTLLLLVE---MYARNRPSVVLEERSSSRALGSS 591

Query: 385 TANIILLAYLKMK-DFKHLRVLLSEL 409
            A++ L + L M      + +L+S L
Sbjct: 592 AASVALNSLLDMPGGLSSVSLLISRL 617


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 49/329 (14%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEME 166
           + + ++  +R+R+     + +  +EK  + +  +    +I  L +   +E A +   E +
Sbjct: 199 MTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFK 258

Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
           G ++  S   +N ++HG+ +   F+ A   + +MKE    P   +Y   I+AYG  + + 
Sbjct: 259 G-SIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFR 317

Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
           ++D  L+ M+ +GC P+ +TY  ++     AG L++    Y+ M       +S   VA  
Sbjct: 318 KVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKM-------KSDGCVA-- 368

Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD---DLASR 343
                                  TP    ++  L +         RL D  D   D+  +
Sbjct: 369 ----------------------DTPFYSSMIFILGKA-------GRLKDACDVFEDMPKQ 399

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMKDFK 400
               ++V    ++S AC  +H   ++ +R   EME    + NV T + +L    K K  K
Sbjct: 400 GVVRDVVTYNSMISTAC--AHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMK 457

Query: 401 HLRVLLSELPTRHVKPDIVTIGILYDARR 429
            L+ LL  +   ++ PD+ T  +L +A R
Sbjct: 458 VLKFLLDHMFKNNISPDLATYSLLVNALR 486



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 106/251 (42%), Gaps = 19/251 (7%)

Query: 65  TLLVESYHEHQALNALIQRLN--KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI 122
           T  +E+Y   +    + Q L   ++  CP   +          + +V+  L  + + R+ 
Sbjct: 304 TNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVT---------YTSVMLHLGKAGQLRKA 354

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            +V++  K+        F S  I  +L + G +++A   F++M    +   +  YNS+I 
Sbjct: 355 LEVYEKMKSDGCVADTPFYSSMIF-ILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMIS 413

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
                 +   AL  L EM++ +  P   TY  L++   K K    +   L  M  +  SP
Sbjct: 414 TACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNISP 473

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----- 297
           D  TY+LL+     +G ++      + M+ +    + ST+  +     +  ML++     
Sbjct: 474 DLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGELESKSMLEEKVRVE 533

Query: 298 --MEKFYKRLL 306
             M++F + L+
Sbjct: 534 EWMDRFSQNLI 544


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 11/292 (3%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G + EA R F  M    + P+   Y ++IHGY   G+       + EM+   + P  
Sbjct: 49  CQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNL 108

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ L+  + +   +    +    M L G   + ++YN+LI      G LK     +++
Sbjct: 109 YTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEA 168

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYI 325
           M  + +H    T   ++D Y   G +     F+ ++    L        +L+        
Sbjct: 169 MRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARD 228

Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385
             +      D+ +    R+  T++ + + + + A          ++ EME A +  +V +
Sbjct: 229 IAHAIRAFSDMKE---RRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQS 285

Query: 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
             ++L A        H R L   + ++ VKP+     +LYD    G+   G+
Sbjct: 286 YGVLLHALCMEGKMMHARKLFQSMDSKGVKPN----NVLYDMMIYGYGREGS 333



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I  LC  G +++A + F+ M    + PS+  +N +I GY K GK + AL F N+MK   
Sbjct: 149 LIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAG 208

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
           L P   TY+ LI  + + +           MK    +P  +TY +LI  FA
Sbjct: 209 LQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFA 259



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N +    ++G  C  G  + A   F EM    +  ++  YN +I G  + GK  +A    
Sbjct: 107 NLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLF 166

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             M+   + P   T++ LI  YGK  KM + +      MK  G  P  +TYN LI  F  
Sbjct: 167 EAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHF-FNQMKAAGLQPSVVTYNELIGGFCR 225

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLDKMEK 300
           A  +      +  M  +R+     T   ++ A+         F ML +MEK
Sbjct: 226 ARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEK 276



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
           ++  ++ + F+M   +EK+ + E + Q    ++  LC EG M  A + FQ M+   +KP+
Sbjct: 259 AKENEMDRAFEMLSEMEKAGL-EVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPN 317

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
             +Y+ +I+GY + G   +AL  + EM++  L P   +Y
Sbjct: 318 NVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASY 356



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           R+R I      + ++++ R+   +     +IG   +E  M+ A     EME   L+  ++
Sbjct: 225 RARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQ 284

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKM 234
            Y  ++H     GK   A      M    + P +  YD +I  YG+    Y  + + ++M
Sbjct: 285 SYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEM 344

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            K  G  P+  +Y L I+     G  +  E     M    +    S    + DA
Sbjct: 345 RK-SGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSESICRVLFDA 397



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           ++IG  C    +  A+RAF +M+   L P+   Y  +I  ++K  + + A   L+EM++ 
Sbjct: 218 ELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKA 277

Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
            L     +Y  L+ A              + M   G  P+++ Y+++I  +         
Sbjct: 278 GLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYG-------R 330

Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAY 289
           EG+    L   M +R S ++  + +Y
Sbjct: 331 EGSSYKALRLIMEMRKSGLIPNVASY 356


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 117 SRSRQIPQVFDM-WKNIEKS---RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
           S+  ++ + +++ +K IE+S    +  +NS  +I  LC+   M ++ R  ++M    ++P
Sbjct: 168 SKEGEVDKAYELFYKMIEQSVSPDVVTYNS--LIDGLCKTKEMVKSERVLEQMVDAGIRP 225

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
           + + YNS+I+GYS  G + E++    EM    L P     +  I A  ++    E     
Sbjct: 226 NNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIF 285

Query: 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
             M L G  P+ I+Y+ L+  +A  G    M      M++K +         +++AY   
Sbjct: 286 DSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARC 345

Query: 293 GMLDKMEKFYKRLLN 307
           GM+DK    ++ + N
Sbjct: 346 GMMDKAMLIFEDMQN 360



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 112/277 (40%), Gaps = 2/277 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+ +E+VR F+EM    L P +   NS IH   +  +  EA    + M      P   +Y
Sbjct: 241 GMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISY 300

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             L+  Y     +  ++  + +M   G  P+H  +N+LI  +A  G++ +    ++ M  
Sbjct: 301 STLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQN 360

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           K M   + T   ++ +    G LD     +  +++   P  E + R L +    +    +
Sbjct: 361 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVK 420

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIIL 390
             +L  ++ ++      V     + +      R  +   ++  M     R NV T N ++
Sbjct: 421 AKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLM 480

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             Y  + + +    LL  + +  ++P+    G L D 
Sbjct: 481 EGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDG 517



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 152/396 (38%), Gaps = 33/396 (8%)

Query: 74  HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE 133
            Q ++A I+  NK  +  +      G W +      +R  K  S S  IP V        
Sbjct: 216 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKES-----VRVFKEMSSSGLIPCVV------- 263

Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
                  N    I  LC    ++EA   F  M     KP++  Y++++HGY+  G F   
Sbjct: 264 -------NCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANM 316

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
              +N M    + P    ++ LI AY +  M D+  +  + M+  G  PD +T+  +I  
Sbjct: 317 NSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 376

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G L      +  M+   +    +    ++    N G L K ++    ++N   P  
Sbjct: 377 LCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPP 436

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGD--DLASRIG-RTELVWCLRLLSHACLLSH-RGIDS 369
              V+  + +    +   R+ +  D  DL  + G R  +V    L+   CL+ +     +
Sbjct: 437 G--VKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 494

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LY 425
           ++  M S  +  N      ++  Y K         +  ++  + VKP  V   I    L+
Sbjct: 495 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLF 554

Query: 426 DARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
            ARR     T A +M+  +     TV I T  +VL 
Sbjct: 555 QARRT----TAAKKMFHEMIESGTTVSIQTYGVVLG 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 59/115 (51%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E A+  F  +    L P +  YN++I G+SK G+ ++A     +M E ++SP   TY+ L
Sbjct: 139 ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 198

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
           I    K K   + +  L+ M   G  P++ TYN LI  ++ AG+ K     +K M
Sbjct: 199 IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 253



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 8/282 (2%)

Query: 158 AVRAFQEMEGFALK------PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
           AV  F+ M+ +A        P++  YN +I  Y ++ +   AL     +    L P   +
Sbjct: 100 AVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCS 159

Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
           Y+ LI  + K    D+       M     SPD +TYN LI        + + E   + M+
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMV 219

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
              +   + T  +++  Y   GM  +  + +K + +S                 ++    
Sbjct: 220 DAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIK 279

Query: 332 RLDDLGDDLASRIGRTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
              D+ D +  +  +  ++    LL  +A       ++S+V  M S  +  N    NI++
Sbjct: 280 EAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILI 339

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG-ILYDARRIG 431
            AY +        ++  ++  + + PD VT   ++    RIG
Sbjct: 340 NAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 381



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C+ G +++A+  F++M    +KP+  +YN I+HG  +  +   A    +EM E   +   
Sbjct: 519 CKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSI 578

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
            TY  ++    +    DE +M L+ +       D IT+N++I 
Sbjct: 579 QTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVIS 621



 Score = 38.1 bits (87), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G LC     +EA    +++    +K  +  +N +I    K+G+  EA      +    
Sbjct: 584 VLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYG 643

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   TY+ +I    K + Y+E D     ++  G +PD    N +++      LLK+ E
Sbjct: 644 LVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRM-----LLKKAE 698


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 3/210 (1%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
           ++ F+   +I +   +G+  EA+   + M+   ++P +  +N++IHG  K G+  EA   
Sbjct: 214 LDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQL 273

Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
             +M    + P + TY  L+  Y +     E     + M+  G  P   TYN +I++   
Sbjct: 274 RTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCE 333

Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
            G +K + G    M  +++     T   ++++Y   G +    K  KR++ S   L +  
Sbjct: 334 DGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFT 393

Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346
            + L   + K      LD+  + L   +GR
Sbjct: 394 YKALIHGFCKA---KELDEAKEALFEMMGR 420



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 50/110 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II  LCE+G M+E      EM+G  ++      N++I+ Y+K G    A      M E  
Sbjct: 327 IIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESG 386

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
           L     TY  LI  + K K  DE    L  M   G SP++  ++ L+  F
Sbjct: 387 LQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGF 436



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-- 200
           + +I  LC++GL++ A +   +M+G  L+    +Y ++ + +   GK   A   LNEM  
Sbjct: 465 RSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNEMAR 524

Query: 201 KEMNLSPQSDTYDGLIQAYGKYK 223
           K+M+++PQ   Y+ L  +YG  K
Sbjct: 525 KQMSVTPQ--IYNCLCTSYGDEK 545



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 1/188 (0%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           + A+IR L    + +++  +        K + +      +I    + G M  A +  + M
Sbjct: 324 YNAIIRKLCEDGKMKEVNGLLSEMDG-RKVQADHVTCNTLINSYAKRGDMTSACKVKKRM 382

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
               L+     Y ++IHG+ K  + +EA   L EM     SP    +  L+  + K    
Sbjct: 383 MESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNT 442

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D + +    +   G  PD   Y  LI+     GL+   +     M  K + +       +
Sbjct: 443 DAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATL 502

Query: 286 LDAYMNFG 293
             A++  G
Sbjct: 503 AYAHLTAG 510


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 155/349 (44%), Gaps = 30/349 (8%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  +IR L +SS      ++FD     +  + NEF    ++   C+ GL ++ +     M
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPE-KGCKPNEFTFGILVRGYCKAGLTDKGLELLNSM 208

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           E F + P+  +YN+I+  + + G+ +++   + +M+E  L P   T++  I A  K    
Sbjct: 209 ESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKV 268

Query: 226 DEIDMCLKMMKLDG----CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
            +       M+LD       P+ ITYNL+++ F   GLL+  +  ++S       +R + 
Sbjct: 269 LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES-------IREND 321

Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYMFSRLDDLG--D 338
            +  L +Y N  +   +   + + + + T LK+ + + +   +Y  N +   L  LG   
Sbjct: 322 DLVSLQSY-NIWLQGLVR--HGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLS 378

Query: 339 DLASRIGRTELVWC-LRLLSHACLL----SHRGID---SVVREMESAKVRWNVTTANIIL 390
           D  + +G  +        +++ CLL    S   +D   S+++EM       N  T NI+L
Sbjct: 379 DAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILL 438

Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            +   M        LL ++  +    D VT  I+ D    G  G+G L+
Sbjct: 439 HSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVD----GLCGSGELD 483



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G   EA   F EM G  L+P    YN  IH + K GK + A   L +M++      
Sbjct: 534 LCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKS 593

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
            +TY+ LI   G      EI   +  M+  G SP+  TYN  IQ     G ++       
Sbjct: 594 LETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLD 653

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
            M+ K +     +   ++ A+      D  ++ ++
Sbjct: 654 EMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFE 688



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/319 (19%), Positives = 131/319 (41%), Gaps = 40/319 (12%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
            L++  R R++  V  ++K++    I+   +    +I  LC+   ++ A   F EM    
Sbjct: 118 LLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKG 177

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
            KP+   +  ++ GY K G  ++ L  LN M+   + P    Y+ ++ ++ +    D+ +
Sbjct: 178 CKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSE 237

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHL---RSSTMVAI 285
             ++ M+ +G  PD +T+N  I      G +      +  M L + + L    S T   +
Sbjct: 238 KLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLM 297

Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
           L  +   G+L+  +  ++ +  +                             DDL S   
Sbjct: 298 LKGFCKVGLLEDAKTLFESIREN-----------------------------DDLVSL-- 326

Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVL 405
           ++  +W   L+ H   +     ++V+++M    +  ++ + NI++    K+      + +
Sbjct: 327 QSYNIWLQGLVRHGKFIEA---ETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTI 383

Query: 406 LSELPTRHVKPDIVTIGIL 424
           +  +    V PD VT G L
Sbjct: 384 VGLMKRNGVSPDAVTYGCL 402



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 66/157 (42%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           L   G   EA    ++M    + PS+  YN ++ G  K+G  ++A   +  MK   +SP 
Sbjct: 336 LVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPD 395

Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + TY  L+  Y      D     L+ M  + C P+  T N+L+      G +   E   +
Sbjct: 396 AVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLR 455

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
            M  K   L + T   I+D     G LDK  +  K +
Sbjct: 456 KMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P L  Y+++++G  K G+F EA     EM    L P S  Y+  I  + K          
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRV 581

Query: 232 LKMMKLDGCSPDHITYNLLI-------QEFACAGLLKRM 263
           LK M+  GC     TYN LI       Q F   GL+  M
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C    +EEA    QEM+G+  +P +  Y++II  Y +   F+     L+EM+  N SP  
Sbjct: 234 CNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNV 293

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY  ++ A  K + ++E    ++ M   GC PD + +N LI     AG +      +K 
Sbjct: 294 VTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKV 353

Query: 270 MLTK-RMHLRSST---MVAILDAYMN----FGMLDKMEK 300
            + K  +   +ST   M+++   Y      FG+L +MEK
Sbjct: 354 AMPKASVAPNTSTYNSMISMFCYYAQEERAFGILKEMEK 392



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  LC+E  +E+A   + E++ + + P+   +N +IHG+  I +  EA   + EMK   
Sbjct: 195 LLDTLCKEKFVEQAREIYLELKHY-IAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYG 253

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             P   +Y  +IQ Y + + +D +   L  M+   CSP+ +TY  ++   A A
Sbjct: 254 CRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKA 306



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           II   C+E   +       EM+     P++  Y +I+   +K  KF EAL  +  M  + 
Sbjct: 264 IIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVG 323

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM-MKLDGCSPDHITYNLLI-------QEFAC 256
             P +  ++ LI   G+    D+     K+ M     +P+  TYN +I       QE   
Sbjct: 324 CRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERA 383

Query: 257 AGLLKRME 264
            G+LK ME
Sbjct: 384 FGILKEME 391


>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 41/290 (14%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN+  +I    E G ME+AV+A  +M+   L P+   YN++I GY   GK   +   L+ 
Sbjct: 112 FNA--VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDL 169

Query: 200 MKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
           M E   +++ P   T++ L+QA+ K K  +E    +  M+  G  PD +TYN +   +  
Sbjct: 170 MLEESNVDVRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQ 229

Query: 257 AGLLKRMEG--TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
            G   R E     K ++ ++      T   ++  Y   G +    +F +R+   R     
Sbjct: 230 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVE--- 286

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
                 A + + N + +   ++ D                           GID V+  M
Sbjct: 287 ------ANLVVFNSLINGFVEVMD-------------------------RDGIDEVLTLM 315

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           +   V+ +V T + ++ A+      +    +  E+    VKPD     IL
Sbjct: 316 KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 365



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 162/386 (41%), Gaps = 59/386 (15%)

Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
           K++ +L E G   EA   F+ +     +PSL  Y +++   +   ++      ++E+++ 
Sbjct: 44  KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQS 103

Query: 204 NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
              P S  ++ +I A+ +   M D +   LKM +L G +P   TYN LI+ +  AG  +R
Sbjct: 104 GTKPDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 162

Query: 263 MEGTYKSMLTK-----RMHLRSSTMVAILDAYMN-------FGMLDKMEKFYKR------ 304
                  ML +     R ++R  T   ++ A+         + ++ KME+   R      
Sbjct: 163 SSALLDLMLEESNVDVRPNIR--TFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTY 220

Query: 305 -LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
             + +    K + VR  +EV  K  M         + A   GRT    C  ++   C   
Sbjct: 221 NTIATCYVQKGETVRAESEVVEKMVM--------KEKAKPNGRT----CGIVVGGYC-RE 267

Query: 364 HRGIDSV--VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
            R  D +  VR M+  +V  N+   N ++  ++++ D   +  +L+ +   +VK D++T 
Sbjct: 268 GRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITY 327

Query: 422 GILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL-E 480
             + +A             W   G++ K  ++  + +   V    H        YS L +
Sbjct: 328 STVMNA-------------WSSAGYMEKAAQVFKEMVKAGVKPDAH-------AYSILAK 367

Query: 481 PYSREKKRWTYQNLIDLVIKHNGKNL 506
            Y R K+    + L++ +I  +  N+
Sbjct: 368 GYVRAKEPKKAEELLETLIVESRPNV 393



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
           EK++ N      ++G  C EG + + +R  + M+   ++ +L ++NS+I+G+ ++   + 
Sbjct: 248 EKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDG 307

Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
               L  MKE N+     TY  ++ A+      ++     K M   G  PD   Y++L +
Sbjct: 308 IDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAK 367

Query: 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLDKMEKFYKRL 305
            +  A   K+ E   ++++ +    R + ++   ++  + + G +D   + + ++
Sbjct: 368 GYVRAKEPKKAEELLETLIVES---RPNVVIFTTVISGWCSSGSMDDAMRVFNKM 419



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P++ I+ ++I G+   G  ++A+   N+M +  +SP   T++ L+  Y + K   + + 
Sbjct: 390 RPNVVIFTTVISGWCSSGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEE 449

Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
            L+MM+  G  P++ T+ LL + +  AGL
Sbjct: 450 VLQMMRGFGVKPENSTFLLLAEAWRVAGL 478



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 55/105 (52%)

Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
           I +SR N      +I   C  G M++A+R F +M  F + P+++ + +++ GY ++ +  
Sbjct: 386 IVESRPNVVIFTTVISGWCSSGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 445

Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
           +A   L  M+   + P++ T+  L +A+    + DE +  +  +K
Sbjct: 446 KAEEVLQMMRGFGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 490


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 141/342 (41%), Gaps = 44/342 (12%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           +  +I  L    ++R   Q+F   K I +   N      +I  LC++GL++EA     EM
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKI-RVYPNLIMYNTVIDGLCKQGLVDEACGLCTEM 236

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSPQSDTYDGLIQAYGKYKM 224
               ++  +  YNS+IHG+  +G+F  A+  L+EM     + P   T++ LI    K   
Sbjct: 237 VENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGR 296

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E    + +M   G  PD ++YN L+  +  +G +   +  +  M+ +       +   
Sbjct: 297 VSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCT 356

Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL--DDLGDDLAS 342
           +++ Y    M+D                 E +V  L E++ KN +   +  + L D L S
Sbjct: 357 LINGYCKVRMVD-----------------EAMVL-LTEMHNKNLVPDTVTYNCLLDGL-S 397

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           + GR+   W                  +V  M ++    ++ T N++L  Y K + F   
Sbjct: 398 KSGRSLYEW-----------------DLVEAMRASGQPADLITYNVLLDDYFKHEKFDKA 440

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
             L   +    + P+I T  IL D    G   +G L+  K I
Sbjct: 441 LALFQHIIEIGISPNIRTYNILLD----GLCKSGRLKYAKEI 478



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 37/281 (13%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC +G + EAV    E      +     Y +II+G  KIGK  +A+    +MK++ + P 
Sbjct: 150 LCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPN 209

Query: 209 SDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
              Y+ +I    K  + DE   +C +M++ +G   D  +YN +I  F   G   R +   
Sbjct: 210 LIMYNTVIDGLCKQGLVDEACGLCTEMVE-NGIELDVYSYNSMIHGFCSVG---RFQAAV 265

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
           K  L   M +R        D Y    ++D + K                + +++E Y   
Sbjct: 266 K--LLDEMVVRGKVYP---DVYTFNILIDGLCK----------------LGRVSEAY--- 301

Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTA 386
                  ++   +  R  + ++V    L++  CL    G    V  +M       NV + 
Sbjct: 302 -------NVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISY 354

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
             ++  Y K++      VLL+E+  +++ PD VT   L D 
Sbjct: 355 CTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDG 395



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 3/194 (1%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
           S    +  QVFD  K +E++ + N  +   +I   C+  +++EA+    EM    L P  
Sbjct: 329 SGSVGEAKQVFD--KMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDT 386

Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
             YN ++ G SK G+       +  M+         TY+ L+  Y K++ +D+     + 
Sbjct: 387 VTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQH 446

Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
           +   G SP+  TYN+L+     +G LK  +  ++ +  K       T   ++      G 
Sbjct: 447 IIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGF 506

Query: 295 LDKMEKFYKRLLNS 308
           LD+ E    +++N+
Sbjct: 507 LDEAEALLYKMVNN 520



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
           LC+ G ++ A   FQ +     +P++  YN +IHG  K G  +EA   L +M   N  P 
Sbjct: 466 LCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPN 525

Query: 209 SDTYDGLIQA 218
             T+D +++A
Sbjct: 526 YITFDTIVRA 535



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 44/97 (45%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           ++A+  FQ +    + P++  YN ++ G  K G+   A      +      P   TY+ +
Sbjct: 438 DKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIM 497

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
           I    K    DE +  L  M  +   P++IT++ +++
Sbjct: 498 IHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVR 534


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 145  IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
            ++  LC+E  ++ A   FQE+ G  + P    +N+++HG+ K     EAL  + EMK+  
Sbjct: 1521 LLDTLCKERSVKRARGVFQELRG-TIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHG 1579

Query: 205  LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
             SP   TY  L++AY   K +  +   L  M+   C P+ +TY +L+     AG  +   
Sbjct: 1580 FSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREAL 1639

Query: 265  GTYKSM 270
             T+  +
Sbjct: 1640 DTFDKL 1645



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 2/151 (1%)

Query: 138  NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
            N FN+  ++   C+  +++EA+   +EM+     PS+  Y S++  Y     F      L
Sbjct: 1550 NSFNT--LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1607

Query: 198  NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +EM++    P   TY  L+ A GK     E       +K DG +PD   YN LI     A
Sbjct: 1608 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667

Query: 258  GLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
            G L+      + M T  +    +T   ++ A
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1698



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 26/247 (10%)

Query: 65   TLLVESY---HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
            T LVE+Y    + Q + AL+  + K+  CP  ++ +           ++  L  + R+R+
Sbjct: 1588 TSLVEAYCMEKDFQTVYALLDEMRKR-RCPPNVVTYT---------ILMHALGKAGRTRE 1637

Query: 122  IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
                FD  K    +    F +  +I +L   G +E+A    +EM    + P++  +N++I
Sbjct: 1638 ALDTFDKLKEDGVAPDASFYNS-LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 1696

Query: 182  HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
                   +   AL  L +M+E + +P   TY  L++   K +    +   +  M     S
Sbjct: 1697 SAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDIS 1756

Query: 242  PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
            PD  TY LL+      G + +     + M++K    +  T   +            MEK 
Sbjct: 1757 PDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLV------------MEKL 1804

Query: 302  YKRLLNS 308
             KR L S
Sbjct: 1805 EKRNLQS 1811


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+++A   F+ ME  + KP +  YNS+I+   K G  +EA +   EM+E    P   TY
Sbjct: 477 GLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTY 536

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ +GK    +        M  +GC+P+ +TYN+L+      G  +     Y++M  
Sbjct: 537 SILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 596

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
           +           ++   + + +L+++E   +R +  R P +
Sbjct: 597 Q----------GLIPDSITYSILERLESRSQRTVRIRKPTR 627



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 132/311 (42%), Gaps = 16/311 (5%)

Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
           RSR++ + F +++ + +   +++ F    ++  L + G++++A + F++M+     P   
Sbjct: 198 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 257

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
            Y  +I    K G+ ++ L F +EM           ++ +I+A GK KM D++   L  M
Sbjct: 258 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 317

Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
             + C P+  TY++ +   A  G L R+       +  R   R S    ++ +    G  
Sbjct: 318 VENDCQPNQFTYSITLDILATEGQLHRLNEVLD--ICSRFMNR-SIYSYLVKSLCKSGHA 374

Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL-----GDDLASRIGRTELV 350
            +    + R+ NS      D    + EV           DL        + + +G   +V
Sbjct: 375 SEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMV 434

Query: 351 W-CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
           +  L  L     +S+     +  +M++  +  +V T NI++ +Y ++        L   +
Sbjct: 435 FSALGKLKQVSFISN-----LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 489

Query: 410 PTRHVKPDIVT 420
                KPD+VT
Sbjct: 490 EASSCKPDVVT 500



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F +M+   + P +  YN +I  Y ++G  ++A      M+  +  P   TY+ LI   GK
Sbjct: 451 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 510

Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
           +   DE  M  K M+  G  PD  TY++LI+ F  +  ++     +  M+++       T
Sbjct: 511 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 570

Query: 282 MVAILDAYMNFGMLDKMEKFYKRL 305
              +LD     G  ++  K Y+ +
Sbjct: 571 YNILLDCLERRGKTEEAHKLYETM 594



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 71/358 (19%), Positives = 138/358 (38%), Gaps = 32/358 (8%)

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
           R  +    + L+ S   Y  I+  + +  + ++      EM+          Y+ L+ A 
Sbjct: 172 RCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDAL 231

Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279
            K  M D+     + MK   C PD  TY +LI+    AG   +    +  M++K   L  
Sbjct: 232 AKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 291

Query: 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339
                I++A     M+DK+     +++ +     +       ++        RL+++ D 
Sbjct: 292 IAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDI 351

Query: 340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR-WNV-----TTANIILLAY 393
            +  + R+   + ++ L   C   H        E  +   R WN        A + +L  
Sbjct: 352 CSRFMNRSIYSYLVKSL---CKSGH------ASEAHNVFCRMWNSHEKGDRDAFVSMLEV 402

Query: 394 LKMKDFKHLRV--LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           L   + K L    LL  +P + +  D+    +++ A        G L+    I  LF  +
Sbjct: 403 LCNAE-KTLEAIDLLHMMPEKGIVTDVGMYNMVFSA-------LGKLKQVSFISNLFDKM 454

Query: 452 EIN-------TDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502
           + N       T  ++++ YG+   +    E++  +E  S +    TY +LI+ + KH 
Sbjct: 455 KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHG 512


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 149/369 (40%), Gaps = 26/369 (7%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           I+  L + G ++EA+R F+EM+  A  P+L  YN +I    + GK + A    + M++  
Sbjct: 349 ILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAG 407

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           L P   T + ++    K +  DE     + M    C+PD IT+  LI      G +    
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
             Y+ ML       S    +++  + N G  +   K YK ++N       DL  +L   Y
Sbjct: 468 KIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNC--SPDL--QLLNTY 523

Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLR---LLSHACLLSHRGIDS--VVREMESAKV 379
           +     +   + G  +   I     V   R   +L H  + +    ++  +   M+    
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGC 583

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             +    NI++  + K         LL E+ T+  +P +VT G +        DG   ++
Sbjct: 584 VLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV-------IDGLAKID 636

Query: 440 MWKRIGFLF-----KTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSRE---KKRWTY 491
                  LF     K +E+N       + G G   R  +E Y  LE   ++      +T+
Sbjct: 637 RLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI-DEAYLILEELMQKGLTPNVYTW 695

Query: 492 QNLIDLVIK 500
            +L+D ++K
Sbjct: 696 NSLLDALVK 704



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 60/97 (61%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ++EA   F+E +   ++ ++ IY+S+I G+ K+G+ +EA L L E+ +  L+P   T++ 
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNS 697

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           L+ A  K +  +E  +C + MK   C+P+ +TY +LI
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           + EA+  FQ M+     P+   Y  +I+G  K+ KFN+A +F  EM++  + P + +Y  
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
           +I    K     E        K +G  PD   YN +I+  +           ++    + 
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827

Query: 275 MHLRSSTMVAILD 287
           +H+ + T V +LD
Sbjct: 828 LHIHNKTCVVLLD 840



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           +E     +IG+LC+   ++EAV  F+ +E     P    YN++I GY   GKF+EA   L
Sbjct: 272 DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL 331

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
              +     P    Y+ ++    K    DE     + MK D  +P+  TYN+LI     A
Sbjct: 332 ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRA 390

Query: 258 GLL 260
           G L
Sbjct: 391 GKL 393



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 140/341 (41%), Gaps = 44/341 (12%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEG 167
           I  + +  ++ ++ + FD+ +N+ K +     S    +IG        +  +  FQ+M+ 
Sbjct: 137 IEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE 196

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
              +P++ ++ ++I G++K G+ + AL  L+EMK  +L      Y+  I ++GK     +
Sbjct: 197 LGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKV---GK 253

Query: 228 IDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
           +DM  K    ++ +G  PD +TY  +I     A  L      ++       HL  +  V 
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFE-------HLEKNRRVP 306

Query: 285 ILDAY----MNFGMLDKMEKFYKRLLNSRTPLKEDLV----------RKLAEVYIKNYMF 330
              AY    M +G   K ++ Y  L   R       V          RK+ +V   +   
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKV---DEAL 363

Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHA----CLLSHRGIDSVVREMESAKVRWNVTTA 386
              +++  D A  +    ++  + +L  A    C    R  DS    M+ A +  NV T 
Sbjct: 364 RVFEEMKKDAAPNLSTYNIL--IDMLCRAGKLDCAFELR--DS----MQKAGLFPNVRTV 415

Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           NI++    K +       +  ++  +   PD +T   L D 
Sbjct: 416 NIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDG 456



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I   C+ G + +A +  +EM+    +P++  Y S+I G +KI + +EA +   E K   
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           +      Y  LI  +GK    DE  + L+ +   G +P+  T+N L+     A  +    
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEAL 712

Query: 265 GTYKSM 270
             ++SM
Sbjct: 713 VCFQSM 718



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 150/376 (39%), Gaps = 33/376 (8%)

Query: 58  YHSTKHTTLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLK 114
           + + +   ++V+   + Q L+   A+ ++++ KV  P +I           F ++I  L 
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEIT----------FCSLIDGLG 458

Query: 115 NSSRSRQIPQVFDMWKNIEK-----SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
                 ++ +V D +K  EK      R N      +I      G  E+  + +++M    
Sbjct: 459 ------KVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQN 512

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
             P L++ N+ +    K G+  +      E+K     P + +Y  LI    K    +E  
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETY 572

Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
                MK  GC  D   YN++I  F   G + +     + M TK       T  +++D  
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD---LGDDLASRIGR 346
                LD+    ++   + R  L   +   L + + K     R+D+   + ++L  + G 
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK---VGRIDEAYLILEELMQK-GL 688

Query: 347 TELVWCLRLLSHACLLSHRGIDSVV--REMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
           T  V+    L  A + +    +++V  + M+  K   N  T  I++    K++ F    V
Sbjct: 689 TPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFV 748

Query: 405 LLSELPTRHVKPDIVT 420
              E+  + +KP  ++
Sbjct: 749 FWQEMQKQGMKPSTIS 764



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ++EA    +E+    L P++  +NS++    K  + NEAL+    MKE+  +P   TY
Sbjct: 671 GRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTY 730

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
             LI    K + +++  +  + M+  G  P  I+Y  +I   A AG
Sbjct: 731 GILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAG 776


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 104 DH--FWAVIRFLKNSSRSRQIPQVFDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVR 160
           DH  F +++  L  + R+ +  ++F   +++  +  +N +N   +I  LC+   ++EA  
Sbjct: 263 DHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNV--LIDTLCKSKRLDEAWE 320

Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
            F E+E   L P +  +N+++ G  K G+ ++A + L +MK    +P    Y+ LI    
Sbjct: 321 IFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLR 380

Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK--SMLTKRMHLR 278
           K    +E    L  M+  G  PD +TYN LI E +C G   R+E   +    ++ +    
Sbjct: 381 KSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE-SCKG--GRIEDALRLFEEISAKGFAN 437

Query: 279 SSTMVAILDAYMNFGMLDKMEKFY 302
           + T   IL+     G +D+  K +
Sbjct: 438 TVTYNTILNGLCMAGRVDEAYKLF 461



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 31/291 (10%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           GL+E++V A + MEG     +   YNS+I  + K G   +AL     M +  L P + T+
Sbjct: 68  GLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTF 127

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-CAGLLKRMEGTYKSML 271
           + L+ A+ K K  D +    + M+   CSP+ ITY++LI     C G+ K ++  +  M 
Sbjct: 128 NVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK-VFLDMK 186

Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           ++       T  +++D     G +DK    ++ + +      E LV   A   + N +  
Sbjct: 187 SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTS------EGLV---ATRVVYNSLIH 237

Query: 332 RLDDLG-DDLASRIGR--------------TELVWCLRLLSHACLLSHRGIDSVVREMES 376
            L   G  D A+++ R              T LV+ L +   A          + +E   
Sbjct: 238 GLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARR-----IFQEARD 292

Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
                +V   N+++    K K       +  EL    + PD+ T   L D 
Sbjct: 293 VGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDG 343



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 45/356 (12%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           F  ++   K + R   + ++F+  +N +    N      +I  +C+ G +E+A++ F +M
Sbjct: 127 FNVLMNAFKKAKRVDSVWKLFEEMQN-QNCSPNVITYSILIDAVCKCGGVEKALKVFLDM 185

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
           +    +P++  Y S+I G  K G  ++A     EM    L      Y+ LI   G+    
Sbjct: 186 KSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRA 245

Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
           D      + M   G  PDH+T+  L+     AG         ++   +R+   +  +   
Sbjct: 246 DAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG---------RASEARRIFQEARDVGCA 296

Query: 286 LDAYMNFGMLDKMEKFYKRLLNS---RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
           LD  +   ++D + K  KRL  +      L+ED +  + +VY  N +   L         
Sbjct: 297 LDVNLYNVLIDTLCK-SKRLDEAWEIFGELEEDGL--VPDVYTFNALMDGL--------C 345

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           + GR    + L                 + +M+ A    +VT  N ++    K    +  
Sbjct: 346 KSGRIHDAFIL-----------------LGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEA 388

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINT 455
             LL E+ +   +PD+VT   L D    G     AL +++ I   GF   TV  NT
Sbjct: 389 GQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNT 443



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           + +NS  +I    + G  ++A+  ++ M    L+P    +N +++ + K  + +      
Sbjct: 90  SAYNS--LIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            EM+  N SP   TY  LI A  K    ++       MK  GC P+  TY  +I     +
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G + +    ++ M ++ +        +++      G  D   K ++ +L+
Sbjct: 208 GHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLS 257



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 36/112 (32%)

Query: 150 CEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
           C+ G +E+A+R F+E+  +GFA   +   YN+I++G    G+ +EA    N MK+     
Sbjct: 415 CKGGRIEDALRLFEEISAKGFA---NTVTYNTILNGLCMAGRVDEAYKLFNGMKQ----- 466

Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
             +T DG+I                         PD +TY  L+     AGL
Sbjct: 467 --ETVDGVID------------------------PDFVTYTTLLNGARQAGL 492



 Score = 38.1 bits (87), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
           + L+P   I+  +  GY+  G   +++  L  M+    +  +  Y+ LI A+ K     +
Sbjct: 50  YILQP--RIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQK 107

Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
                ++M   G  PD  T+N+L+  F  A  +  +   ++ M  +       T   ++D
Sbjct: 108 ALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILID 167

Query: 288 AYMNFGMLDKMEKFY 302
           A    G ++K  K +
Sbjct: 168 AVCKCGGVEKALKVF 182


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 1/192 (0%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R F++++   + P +  YN++I+GY+++ K  EA  +  EMKE  + P   TY
Sbjct: 164 GKVETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTY 223

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             LI+ Y      D+    ++ MK  G  P+ ITY+ L+     A  +       K M+ 
Sbjct: 224 TTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVD 283

Query: 273 KRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
           K +  + +S  + ++ +    G LD      K ++    P +      L E Y K   + 
Sbjct: 284 KYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPTEAGHYGVLIENYCKAGKYD 343

Query: 332 RLDDLGDDLASR 343
           +   L D L  +
Sbjct: 344 QAVKLFDKLIEK 355


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 127 DMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHG 183
           +MW+ + K  +   N+    +I  LC++G+++EA + F E+E GF   PSL  YNS+I G
Sbjct: 361 EMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELERGFL--PSLLTYNSLIIG 418

Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
             + G+  EA    ++M E    P + TY+ LI+ + K    +E     K M   GC+P 
Sbjct: 419 LCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTPS 478

Query: 244 HITYNLLIQEFA 255
              Y  L+   +
Sbjct: 479 KFLYQALVDSLS 490



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           IIG LCE G ++EA R + +M     +P+   Y ++I G+ KIGK NE      EM    
Sbjct: 416 IIG-LCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRG 474

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
            +P    Y  L+ +  K    D +   ++   L G
Sbjct: 475 CTPSKFLYQALVDSLSKPSHDDTVCTIVEAAALRG 509



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 64/161 (39%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++   C +G +E A + F ++     +P   +Y  +I GY    K  +A   ++EM    
Sbjct: 241 VLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAG 300

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P   TY  +I+A  K +   E     + M   G  PD      ++      G      
Sbjct: 301 VQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEAN 360

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             ++ M+ K +   ++ +  ++      GM+ +  K +  L
Sbjct: 361 EMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDEL 401



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 1/170 (0%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           NE     +I   C+E    EA    +EM G    P   +   ++    + GK  EA    
Sbjct: 304 NEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMW 363

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
            +M + ++ P +     LI    K  M  E       ++  G  P  +TYN LI      
Sbjct: 364 RQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELE-RGFLPSLLTYNSLIIGLCEN 422

Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
           G L+     +  M+ +R    + T  A++  +   G  ++    +K +++
Sbjct: 423 GELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMS 472


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC----EEGLMEEAVRAFQE 164
           +++     ++ ++  +VFD   N EKS +     QK+  M+     + G  E+A + F  
Sbjct: 216 ILKTFVQGNKFKEAEEVFDKLLNDEKSPLRP--DQKMFNMMIYMYKKSGSHEKARQTFAL 273

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           M    +K +   YNS++   S    + E     ++M+  +L P   +Y  LI AYGK + 
Sbjct: 274 MAERGIKKATVTYNSLM---SFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARR 330

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
            +E     + M   G  P    YN+L+  F+ +G++++    +KSM   +      +   
Sbjct: 331 EEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTT 390

Query: 285 ILDAYMNFGMLDKMEKFYKRLL 306
           +L AY+N   ++  EKF+KRL+
Sbjct: 391 MLSAYVNAPDMEGAEKFFKRLI 412



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 1/157 (0%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           EEA+  F+EM    ++P+ + YN ++  +S  G   +A +    M+     P   +Y  +
Sbjct: 332 EEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTTM 391

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           + AY      +  +   K +  DG  P+ +TY  LI+ +A A  ++++   Y+ ML + +
Sbjct: 392 LSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGI 451

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTP 311
               + +  I+DA+   G  D    ++K + LN   P
Sbjct: 452 KANQTILTTIMDAHGKNGDFDSAVNWFKEMALNGLLP 488



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 134/335 (40%), Gaps = 17/335 (5%)

Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
           +I  Y K+G FN A   L  M +   +P   +   L++AYGK   Y+  +   + M+  G
Sbjct: 146 LITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTFG 205

Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-KRMHLRSSTMVAILDAYM--NFGMLD 296
             P   TY ++++ F      K  E  +  +L  ++  LR    +  +  YM    G  +
Sbjct: 206 PEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHE 265

Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRL 355
           K  + +  L+  R   K  +       +  NY    + ++ D +     R ++V + L +
Sbjct: 266 KARQTFA-LMAERGIKKATVTYNSLMSFETNY--KEVSNIYDQMQRADLRPDVVSYALLI 322

Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
            ++          +V  EM  A VR      NI+L A+      +  R++   +      
Sbjct: 323 NAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYM 382

Query: 416 PDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           PD+ +   +  A     D  GA + +KR+   GF    V   T   ++  Y K + +   
Sbjct: 383 PDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGT---LIKGYAKANDIEKV 439

Query: 473 EEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507
            E Y   E   R  K    Q ++  ++  +GKN D
Sbjct: 440 MEKYE--EMLGRGIK--ANQTILTTIMDAHGKNGD 470



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/306 (18%), Positives = 116/306 (37%), Gaps = 46/306 (15%)

Query: 135 SRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
            ++ +FN ++K++G++ + G                  P++    +++  Y K G++N A
Sbjct: 151 GKLGDFNGAEKVLGLMNKNGY----------------APNVVSQTALMEAYGKGGRYNNA 194

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS---PDHITYNLL 250
                 M+     P + TY  +++ + +   + E +     +  D  S   PD   +N++
Sbjct: 195 EAIFRRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMM 254

Query: 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN--- 307
           I  +  +G  ++   T+  M  +           I  A + +  L   E  YK + N   
Sbjct: 255 IYMYKKSGSHEKARQTFALMAER----------GIKKATVTYNSLMSFETNYKEVSNIYD 304

Query: 308 --SRTPLKEDLVRKLAEVYIKNYMFSRLDDLG-------DDLASRIGRTELVWCLRLLSH 358
              R  L+ D+V     + I  Y  +R ++          D   R  R      L   S 
Sbjct: 305 QMQRADLRPDVVS--YALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSI 362

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           + ++    I  V + M   K   ++ +   +L AY+   D +        L     +P++
Sbjct: 363 SGMVEQARI--VFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNV 420

Query: 419 VTIGIL 424
           VT G L
Sbjct: 421 VTYGTL 426



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%)

Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
           ME A + F+ +     +P++  Y ++I GY+K     + +    EM    +         
Sbjct: 401 MEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTT 460

Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
           ++ A+GK   +D      K M L+G  PD    N+L+
Sbjct: 461 IMDAHGKNGDFDSAVNWFKEMALNGLLPDQKAKNILL 497


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171
           + KNS+ +  +    +M +    + +  +NS  +I  LC EG +EE V+  +EME   L 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNS--LISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
           P+   +  ++ G+ K G   +A  +++ M E N+ P    Y  LI  Y +    ++    
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAV 391

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            + M   G SP+  TYN LI  F+ +G  +   G    M  K +     T   ++ A   
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 292 FGMLDKMEKF 301
            G + K  K 
Sbjct: 452 KGEVRKAVKL 461



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 116/294 (39%), Gaps = 39/294 (13%)

Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-- 194
           I  FN+  +I  LC  G + +A    ++++ + L PS+  YNS+I GY K G        
Sbjct: 191 IYTFNT--VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 195 -LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
            + L EM E  +SP + T+  LI  Y K           + MK  G +   +TYN LI  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
               G ++      + M    +     T   +L  +   GM+     +   +  +   ++
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM--TERNVE 366

Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373
            D+V  +  + I  Y   RL  + D +A                            V   
Sbjct: 367 PDVV--IYTILIDGY--RRLGKMEDAMA----------------------------VKEA 394

Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           M    +  NVTT N ++  + +  D++    LL E+  + ++ D+VT  +L  A
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G ME+A+   + M    + P++  YN +I G+S+ G +  A   L+EMKE  +     TY
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + LI A        +    L  M   G  P+H+TYN +IQ F   G +K        M  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
            R      T    +  +   G +D+       +L+
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +IG LC +G + +AV+   EM    L+P+   YN+II G+   G    A      M++  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNLL 250
                 TY+  I+ + +    DE +  L  M LD C  P+ ITY  +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEM-LDKCLVPNGITYETI 550


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 142/332 (42%), Gaps = 20/332 (6%)

Query: 106 FWAVIRFLKNSSRSRQIPQVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
           + AVI      +   +   +FD M K      I  FN  K+I +LC++G ++E+ + F +
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFN--KLIHVLCKKGNVQESEKLFSK 241

Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
           +    + P+L  +N  I G  + G  +EA   L  +    L+P   +Y+ LI  + K+  
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301

Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
             E +  L  M   G  P+  TYN +I  F  AG+++  +   +  + K       T  +
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSS 361

Query: 285 ILDAYMNFGMLDK-MEKFYKRL---LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
           +++   N G +++ M  FY+ +         L   LV+ L++  +       + D+ +  
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH- 420

Query: 341 ASRIGRTELVWCLRLLSH-----ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK 395
               G +  +W   L+ +      CL    GI   + +  +     ++ T N ++  Y K
Sbjct: 421 ----GCSPDIWTYNLVVNGLCKMGCLSDANGI---LNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
            ++      +L  + +  + PD++T   L + 
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 164/421 (38%), Gaps = 59/421 (14%)

Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
           N F     I  LC +G ++EA R  + +    L P +  YN++I G+ K  K  EA  +L
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
           ++M    + P   TY+ +I  + K  M    D  L+     G  PD  TY+ LI      
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 258 GLLKR-MEGTYKSMLTKRMH--LRSSTMVA-------ILDAYMNFGMLDKMEK------- 300
           G + R M   Y++M     H  +  +T+V        +L A     M D ME        
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL--MKDMMEHGCSPDIW 427

Query: 301 FYKRLLNSRTPLK---------EDLVRK-----------LAEVYIKNYMFSRLDDLGDDL 340
            Y  ++N    +           D + K           L + Y K     +  ++ D +
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487

Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVV---REMESAKVRWNVTTANIILLAYLKMK 397
            S     +++    LL+  C    R +D+VV   + M       N+ T NI++ ++ K +
Sbjct: 488 LSHGITPDVITYNTLLNGLC--KARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDR 545

Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE--------MWKRIGFLFK 449
                  L  E+ TR + PDIVT+  L      G    G L+        + K   F + 
Sbjct: 546 KVSEAMELFKEMKTRGLTPDIVTLCTLI----CGLCSNGELDKAYELFVTIEKEYKFSYS 601

Query: 450 TVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGT 509
           T   N   +++  +     +   E+++  +         +TY+ +ID   K    +L  T
Sbjct: 602 TAIFN---IMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHT 658

Query: 510 F 510
           F
Sbjct: 659 F 659



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 139 EFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           EFN+     +I    +E    EA   F EM    + P +  +N +IH   K G   E+  
Sbjct: 178 EFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEK 237

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +++ +  + P   T++  IQ   +    DE    L+ +  +G +PD I+YN LI  F 
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297

Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
               L   E     M+   +     T   I++ +   GM+   +K  +
Sbjct: 298 KHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/214 (17%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 110 IRFLKNSSRSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
           I  +++  R  ++ +  ++++ ++    +  +  +N+  I+ +L E G   +A + +  M
Sbjct: 80  IGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNA--IMNILVEYGYFSQAHKVYMRM 137

Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK---- 221
           +   + P +  +   +  +   G+   AL  LN M        + +Y  +I  + K    
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQ 197

Query: 222 ---YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
              Y ++DE      M+K  G  PD +T+N LI      G ++  E  +  ++ + +   
Sbjct: 198 IEAYHLFDE------MLK-QGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250

Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TP 311
             T    +      G +D+  +  + +++   TP
Sbjct: 251 LFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTP 284


>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E AV+ ++++     +P    Y S I+ Y ++G +++A     EM+E         Y  L
Sbjct: 382 EAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSL 441

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  YGK     +    L  MK  GC P+   YN+L++    A  LK++E  +K M  K++
Sbjct: 442 ISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKI 501

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                +  +I+ AY+     +K E++Y+    +   + +     +  V+ K    SR+D+
Sbjct: 502 APDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKT---SRVDE 558

Query: 336 L----------GDDLASRIGRTEL 349
           L          G  L  R+ RT L
Sbjct: 559 LVKLLRDMKLEGTRLDERLYRTAL 582



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C  GL  +A   F EME       +  Y+S+I  Y K G+  +A+  L +MKE   
Sbjct: 407 INAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGC 466

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P    Y+ L++ +GK K   +++   K MK    +PD ++Y  +I  +  A   ++ E 
Sbjct: 467 QPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQ 526

Query: 266 TYK 268
            Y+
Sbjct: 527 YYR 529



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 68/150 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M  + G +++A+R   +M+    +P++ IYN ++  + K     +      EMK   
Sbjct: 441 LISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKK 500

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   +Y  +I AY K   +++ +   +  +++G + D     +++  F+    +  + 
Sbjct: 501 IAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELV 560

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
              + M  +   L        L+A M+ G+
Sbjct: 561 KLLRDMKLEGTRLDERLYRTALNALMDAGL 590



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 42/191 (21%)

Query: 124 QVFDMWKNIEKSRINEFN--SQKIIGMLCEE----GLMEEAVRAFQEMEGFALKPSLEIY 177
           +V +++  +E SRI++    S KI G+LCE     G + E++  F++M    +     IY
Sbjct: 240 RVMELFNEVE-SRISDSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTIY 298

Query: 178 NSIIHGYSKI-----------------------------------GKFNEALLFLNEMKE 202
           +++I  ++ I                                   G   +AL  +  MK+
Sbjct: 299 SALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKD 358

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             +      +  ++  Y   + Y+      + +  DGC P  +TY   I  +   GL  +
Sbjct: 359 FKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSK 418

Query: 263 MEGTYKSMLTK 273
            E  +  M  K
Sbjct: 419 AEDIFGEMEEK 429


>gi|125604036|gb|EAZ43361.1| hypothetical protein OsJ_27961 [Oryza sativa Japonica Group]
          Length = 319

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 48/263 (18%)

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           Y L +  F  AG L  ME   + M    + + S+T  A +  Y   G + +ME  Y+RL 
Sbjct: 84  YPLAVTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAASGTVPQMEAAYRRLK 143

Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            SR  +    +R +A  YI +  + +L +   D+ S             L  A L     
Sbjct: 144 ASRLLVSVAAIRAMASAYISHRKYYKLGEFVTDMKS-------------LQRAFL----- 185

Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
                 +M +A    ++TT N+  +A+ KM  F  L +    +    V PD+VT G   D
Sbjct: 186 ------DMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMRRDGVAPDLVTHGCFVD 239

Query: 427 A---RRI------GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
           A   RR+       FD  GA E             + TD +V   +GKG F    E +  
Sbjct: 240 AYLERRLARNLNFAFDRLGAGE-----------PVVATDAVVFEAFGKGGFHASSEVL-- 286

Query: 478 SLEPYSREKKRWTYQNLIDLVIK 500
            LE    E +RWTY  L+ + ++
Sbjct: 287 -LEATGGE-RRWTYYKLLGVYLR 307


>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
           E AV+ ++++     +P    Y S I+ Y ++G +++A     EM+E         Y  L
Sbjct: 382 EAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSL 441

Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
           I  YGK     +    L  MK  GC P+   YN+L++    A  LK++E  +K M  K++
Sbjct: 442 ISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKI 501

Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
                +  +I+ AY+     +K E++Y+    +   + +     +  V+ K    SR+D+
Sbjct: 502 APDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKT---SRVDE 558

Query: 336 L----------GDDLASRIGRTEL 349
           L          G  L  R+ RT L
Sbjct: 559 LVKLLRDMKLEGTRLDERLYRTAL 582



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C  GL  +A   F EME       +  Y+S+I  Y K G+  +A+  L +MKE   
Sbjct: 407 INAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGC 466

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P    Y+ L++ +GK K   +++   K MK    +PD ++Y  +I  +  A   ++ E 
Sbjct: 467 QPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQ 526

Query: 266 TYK 268
            Y+
Sbjct: 527 YYR 529



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 68/150 (45%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I M  + G +++A+R   +M+    +P++ IYN ++  + K     +      EMK   
Sbjct: 441 LISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKK 500

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           ++P   +Y  +I AY K   +++ +   +  +++G + D     +++  F+    +  + 
Sbjct: 501 IAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELV 560

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
              + M  +   L        L+A M+ G+
Sbjct: 561 KLLRDMKLEGTRLDERLYRTALNALMDAGL 590



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 42/191 (21%)

Query: 124 QVFDMWKNIEKSRINEFN--SQKIIGMLCEE----GLMEEAVRAFQEMEGFALKPSLEIY 177
           +V +++  +E SRI+     S KI G+LCE     G + E++  F++M    +     IY
Sbjct: 240 RVMELFNEVE-SRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTIY 298

Query: 178 NSIIHGYSKI-----------------------------------GKFNEALLFLNEMKE 202
           +++I  ++ I                                   G   +AL  +  MK+
Sbjct: 299 SALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKD 358

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             +      +  ++  Y   + Y+      + +  DGC P  +TY   I  +   GL  +
Sbjct: 359 FKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSK 418

Query: 263 MEGTYKSMLTK 273
            E  +  M  K
Sbjct: 419 AEDIFGEMEEK 429



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 137/348 (39%), Gaps = 23/348 (6%)

Query: 86  KKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ-- 143
           K V   L++ + D       F A +R        +    VF   K+   +RI E +S   
Sbjct: 170 KVVKSLLEVFERDSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKS---ARI-EADSGCY 225

Query: 144 -KIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
            +++    + G  E  +  F E+E     +   S +IY  +    +K G+  E+L F  +
Sbjct: 226 CRVMEAYLKLGDSERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRD 285

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M++  ++     Y  LI  +   +     +      K      D   +  LI  +   G 
Sbjct: 286 MRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGS 345

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L++     + M   ++ +      AI++ Y      +   K Y++L+       +     
Sbjct: 346 LEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYAS 405

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE------ 373
               Y +  ++S+ +D+  ++  + G  + V     ++++ L+S  G    +++      
Sbjct: 406 AINAYCRVGLYSKAEDIFGEMEEK-GFDKCV-----VAYSSLISMYGKTGRLKDAMRLLA 459

Query: 374 -MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
            M+    + NV   NI++  + K K+ K +  L  E+  + + PD V+
Sbjct: 460 KMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVS 507


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C++G +E A++ +++M     KP+L IYNS+I+G++K G F+ A+L ++ ++ M L    
Sbjct: 422 CKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF-DV 480

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
            TY+ LI  Y      D+       M+  G    H+TYN LI     AG + + +   K 
Sbjct: 481 VTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKM 540

Query: 270 MLTKRM 275
           M+ + +
Sbjct: 541 MVLRGL 546



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 124 QVFD-MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           QV++ M K  EK  +  +NS  +I    +EG  + A+     +    L   +  YN++IH
Sbjct: 432 QVYEKMIKTGEKPNLLIYNS--VINGFAKEGSFDPAILLIDTLRRMGLFDVVT-YNTLIH 488

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           GY   GK ++A    +EM+   +     TY+ LI +  K     +    +KMM L G  P
Sbjct: 489 GYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIP 548

Query: 243 DHITYNLLIQEFA 255
           D++TY +LI  F+
Sbjct: 549 DYVTYTILITSFS 561



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 48/255 (18%)

Query: 95  LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK----SRINEFNSQKIIGMLC 150
           LQ DG W   H W    FL +  +   + + + M+K +        +N FN   II  L 
Sbjct: 119 LQLDGFWVTVHAWN--NFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFN--LIIYALG 174

Query: 151 EEGLMEEAV--------------------------------------RAFQEMEGFALKP 172
           +EG + EAV                                      R  + M G ++KP
Sbjct: 175 KEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKP 234

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMC 231
               YNS ++G+ KIG    A  F  EM    + P   TY  L+  Y +   + +   +C
Sbjct: 235 DSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLC 294

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
            ++++  G  P+ + YN +I   +  G ++        M+ KR++    T   +++    
Sbjct: 295 DELVE-KGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCR 353

Query: 292 FGMLDKMEKFYKRLL 306
            G L++  KF + +L
Sbjct: 354 NGYLNEAFKFLQMIL 368



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 6/275 (2%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +E A R   E+    L P+  IYNSIIH  S  G    A L L++M +  + P   TY
Sbjct: 285 GSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTY 344

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             +I+   +    +E    L+M+       D  ++N++I     +  L   +    +M  
Sbjct: 345 SIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYV 404

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           + +     T   ++D +   G ++   + Y++++ +       +   +   + K   F  
Sbjct: 405 RGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDP 464

Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMESAKVRWNVTTANII 389
              L D L  R+G  ++V    L+   C  +   ID   ++  EM ++ +  +  T N +
Sbjct: 465 AILLIDTL-RRMGLFDVVTYNTLIHGYC--NCGKIDQAFALFSEMRNSGILASHVTYNTL 521

Query: 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           + +  K       + L+  +  R + PD VT  IL
Sbjct: 522 INSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTIL 556



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           C  G +++A   F EM    +  S   YN++I+   K G   +A   +  M    L P  
Sbjct: 491 CNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDY 550

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
            TY  LI ++ K    +E+      M L G  PD  TY  ++
Sbjct: 551 VTYTILITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMV 592



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%)

Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
             II  L  EG ME A     +M    + P    Y+ +I G  + G  NEA  FL  + E
Sbjct: 310 NSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILE 369

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
           M+L   + +++ +I    +          L  M + G  PD +T+  LI      G ++ 
Sbjct: 370 MSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVEN 429

Query: 263 MEGTYKSML 271
               Y+ M+
Sbjct: 430 AIQVYEKMI 438


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 23/306 (7%)

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
           P VFDM                I+ +  E+G+ + A+  F  M      PSL   NS++ 
Sbjct: 186 PTVFDM----------------ILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLS 229

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
              + G+  +ALL   +M  + + P   +Y  ++ AY K    DE    +K M+   C P
Sbjct: 230 NLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEP 289

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           + +TYN LI  +   G +   +     M  K +   S T   ++  Y   G +++ EK +
Sbjct: 290 NVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLF 349

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL--GDDLASRIG-RTELVWCLRLLSHA 359
             ++     + E +   L   Y       R+DD     D   ++G +   V C  L++  
Sbjct: 350 GCMMEKNLFVDEHVYGVLIHAYCTA---GRVDDALRIRDAMLKVGLKMNTVICNSLINGY 406

Query: 360 CLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           C L H      V+  M+   ++ +    N +L  + K +DF     L  E+  + V   +
Sbjct: 407 CKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTV 466

Query: 419 VTIGIL 424
           VT   L
Sbjct: 467 VTYNTL 472



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 18/181 (9%)

Query: 138 NEFNSQKIIGML----CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
           N F  + + G+L    C  G +++A+R    M    LK +  I NS+I+GY K+G  N+A
Sbjct: 356 NLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKA 415

Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHIT 246
              L  MK+ NL P S  Y+ L+  + K       +K+ DE       M   G +   +T
Sbjct: 416 AEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDE-------MHNKGVNFTVVT 468

Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
           YN L++     G ++     +  M  + +     T   +LDA+   G  D+    +K  L
Sbjct: 469 YNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDAL 528

Query: 307 N 307
           +
Sbjct: 529 S 529



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%)

Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
           ++N      +I   C+ G + +A      M+ + LKP    YN+++ G+ K   F +A  
Sbjct: 393 KMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFK 452

Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
             +EM    ++    TY+ L++        +       +M   G +P+ +TY  L+  F 
Sbjct: 453 LCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFF 512

Query: 256 CAGLLKRMEGTYKSMLTK 273
             G   R    +K  L+K
Sbjct: 513 KVGTFDRAMMIWKDALSK 530


>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
 gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
          Length = 458

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 15/286 (5%)

Query: 154 LMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           LM  A+   Q M       P +  Y+ +I      G+ + A   L +M    + P   TY
Sbjct: 107 LMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLADMTARGIQPNRVTY 166

Query: 213 DGLIQAYGKYKMYDEI-DMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
           + ++ AY K    D++ D+ L+M++     C PDH + N +++ F   G ++RME  ++ 
Sbjct: 167 NIILDAYAKCGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQR 226

Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEV 323
           + T      S T+ +++ AY    M DKM    + +   R   + D      L+      
Sbjct: 227 LTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYI--HRYHYQVDAVTYNILINAYGRA 284

Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
             K  M      +       +    + +C  +  +      R +  ++ +M   KV+ + 
Sbjct: 285 GRKTQMLKTFTSMK---CGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDT 341

Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
              N +L AY +  D   +    + +  +  KPD +T  IL  A R
Sbjct: 342 ALYNSVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYR 387



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I      G   + ++ F  M+   ++P    Y ++I+ Y K G   +    L +M    
Sbjct: 277 LINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHK 336

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P +  Y+ ++ AY +      ID     M+  GC PDH+TYN+LIQ +   GL  + +
Sbjct: 337 VQPDTALYNSVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKAD 396



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 109/279 (39%), Gaps = 33/279 (11%)

Query: 151 EEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
           + G  E A++ F+ +      +P    Y  ++    K  + +EA      M      P  
Sbjct: 33  QRGQWEAALKVFELLRSQQWYQPYAGTYIRMLEMLGKCKRPDEAASLFQTMLADGCGPSR 92

Query: 210 DTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
           + +  L+ AY +   M   +++   M     CSPD  TY+LLI+     G L R      
Sbjct: 93  EAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLA 152

Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
            M  + +     T   ILDAY   G LDK+     ++L S +P          + + +N 
Sbjct: 153 DMTARGIQPNRVTYNIILDAYAKCGSLDKLHDLALQMLQSPSPSCR------PDHWSRNA 206

Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388
           +     + GD     I R E  W  RL + +      G DS+              T + 
Sbjct: 207 IVKGFGNRGD-----IRRME-EWFQRLTTPS-----DGPDSL--------------TLHS 241

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
           ++ AY K + F  +  ++  +   H + D VT  IL +A
Sbjct: 242 LMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINA 280



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G+  +  R  ++M    ++P   +YNS++  Y +    +    +   M+E    P   TY
Sbjct: 320 GMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTY 379

Query: 213 DGLIQAYGKYKMYDEIDM 230
           + LIQAY    + D+ D+
Sbjct: 380 NILIQAYRSQGLTDKADV 397


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 10/199 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++  L +   ++EA+   + MEG  + P    YNS+I   S+  K NEA    +EM +  
Sbjct: 331 VVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRG 390

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           LSP   TY    +     K  +E+ M L+ MK  GC PD  TY +LI+ F     L  + 
Sbjct: 391 LSPTIRTYHAFFRI---LKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVF 447

Query: 265 GTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR---TPLKEDLVRKL 320
             +  M    +   RSS +V I   ++N G L++  K+Y  +   +    P  ED+++  
Sbjct: 448 KLWSEMSENGVGPDRSSYIVLIHGLFLN-GKLEEAYKYYIEMKEKQFLPEPKTEDMLQ-- 504

Query: 321 AEVYIKNYMFSRLDDLGDD 339
           A +  K     R+ DL D+
Sbjct: 505 AWISGKETADVRMIDLKDN 523



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G M EA R ++EM    ++  +  Y+SII  YSK+   N+ L   N+MKEM ++P    Y
Sbjct: 269 GSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVY 328

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + ++ A  K     E    +K M+  G +PD +TYN LI+  + A  +   +  +  ML 
Sbjct: 329 NAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQ 388

Query: 273 K 273
           +
Sbjct: 389 R 389


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,785,776,150
Number of Sequences: 23463169
Number of extensions: 316897556
Number of successful extensions: 836112
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5019
Number of HSP's successfully gapped in prelim test: 3056
Number of HSP's that attempted gapping in prelim test: 764812
Number of HSP's gapped (non-prelim): 50054
length of query: 510
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 363
effective length of database: 8,910,109,524
effective search space: 3234369757212
effective search space used: 3234369757212
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)