BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010459
(510 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23278|PP310_ARATH Pentatricopeptide repeat-containing protein At4g14190,
chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2
SV=2
Length = 501
Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/472 (55%), Positives = 336/472 (71%), Gaps = 8/472 (1%)
Query: 35 FFAKTLIRKPISCCCLSSAP-SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQ 93
F T P S P S++ +T+ T+LL H H+ L++L +RL+ SCPL+
Sbjct: 30 FLTSTSYSIPRPSSLRRSLPLSINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLR 85
Query: 94 ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
+LQ DGDW+KDHFWAVIRFL+ SSR +I VFD WKN+E SRI+E N ++II LCEE
Sbjct: 86 LLQEDGDWSKDHFWAVIRFLRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEK 145
Query: 154 LMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
M EA+RAF+ M + L PSLEIYNSIIH Y+ GKF EA+ +LN MKE L P ++TY
Sbjct: 146 SMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETY 205
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
DGLI+AYGK+KMYDEI +CLK M+ DGC DH+TYNLLI+EF+ GLLKRME Y+S+++
Sbjct: 206 DGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMS 265
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
++M L ST++++L+AY FG+++KME+ +++ L E LVRKLA VYI+N MFSR
Sbjct: 266 RKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSR 325
Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
LDDLG + ASR RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LL
Sbjct: 326 LDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALL 385
Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
AY KM DF + +LLSEL +HVK D+VT+GI++D FDGTG WK+IGFL K V
Sbjct: 386 AYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPV 445
Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
E+ TDPLV A +GKG FLR CEEV + SL E K WTYQ L++LV+K+
Sbjct: 446 EMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497
>sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630
OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2
Length = 415
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 173/391 (44%), Gaps = 37/391 (9%)
Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
K I++S+++ SQKI + L + L + A F + + L P+ +++
Sbjct: 30 KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89
Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
+++ G A +E+ P LI AY ++ +DE+ K +
Sbjct: 90 LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149
Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
+ +L I F G L+ MEG + M +K + L + T I+ Y FG LDKMEK
Sbjct: 150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209
Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
Y R+ ++E+ +R + Y+K F RL + D+ +GR L +W LLS+
Sbjct: 210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 267
Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
A + + M A ++TT NI LA+ +M F L + L + ++ PD+
Sbjct: 268 AADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDL 327
Query: 419 VTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFL 469
VT G + DA +R+ + + F++ + ++ TDPL V GKG F
Sbjct: 328 VTFGCVVDAYMDKRLA----------RNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFH 377
Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
E V P +K WTY+ LI + +K
Sbjct: 378 LSSEAVL-EFSP----RKNWTYRKLIGVYLK 403
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 21/358 (5%)
Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV 159
+ K + A++ S R ++ +V +M N I +NS +I +G+++EA+
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAM 369
Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
+M KP + Y +++ G+ + GK A+ EM+ P T++ I+ Y
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429
Query: 220 GK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
G K++DEI++C G SPD +T+N L+ F G+ + G +K M
Sbjct: 430 GNRGKFTEMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
T ++ AY G ++ Y+R+L++ + + M+ +
Sbjct: 483 AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542
Query: 333 LDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
+ + ++ R EL +C L ++A + S+ E+ S + ++L
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVL 602
Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGF 446
K SEL R PDI T+ + Y R++ G L+ K GF
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 3/270 (1%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G +E A+ F+EM KP++ +N+ I Y GKF E + +E+ LSP T+
Sbjct: 398 GKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTW 457
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
+ L+ +G+ M E+ K MK G P+ T+N LI ++ G ++ Y+ ML
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
+ ST +L A GM ++ EK + + R E L Y
Sbjct: 518 AGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGL 577
Query: 333 LDDLGDDLASRI--GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390
+ L +++ S + R L+ L L+ C L + E++ ++TT N ++
Sbjct: 578 MHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA-ERAFSELKERGFSPDITTLNSMV 636
Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
Y + + +L + R P + T
Sbjct: 637 SIYGRRQMVAKANGVLDYMKERGFTPSMAT 666
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 8/276 (2%)
Query: 150 CEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
C+ G L +EA + F+EM+ YN+++ Y K + EA+ LNEM SP
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPS 348
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
TY+ LI AY + M DE M G PD TY L+ F AG ++ ++
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIK 326
M T A + Y N G +M K + + + L D+V L V+ +
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI--NVCGLSPDIVTWNTLLAVFGQ 466
Query: 327 NYMFSRLDDLGDDL--ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
N M S + + ++ A + E L C + + +V R M A V +++
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM-TVYRRMLDAGVTPDLS 525
Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
T N +L A + ++ +L+E+ KP+ +T
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/316 (17%), Positives = 137/316 (43%), Gaps = 2/316 (0%)
Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
F A I+ N + ++ ++FD N+ + ++ + + G+ E F+EM
Sbjct: 422 FNAFIKMYGNRGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225
+ P E +N++I YS+ G F +A+ M + ++P TY+ ++ A + M+
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
++ + L M+ C P+ +TY L+ +A + M + + + + R+ + +
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600
Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
+ +L + E+ + L + + +Y + M ++ + + D + R
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660
Query: 346 RTELVWCLRLL-SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
+ L+ H+ + ++RE+ + ++ ++ + N ++ AY + +
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720
Query: 405 LLSELPTRHVKPDIVT 420
+ SE+ + PD++T
Sbjct: 721 IFSEMRNSGIVPDVIT 736
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 43/331 (12%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK------- 189
++ ++ +I G EAV F++ME KP+L YN I++ + K+G
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITS 265
Query: 190 -----------------------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
EA EMK S TY+ L+ YG
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
K E L M L+G SP +TYN LI +A G+L M K
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
T +L + G ++ ++ + N+ ++Y F+ + + D++
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445
Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAYLKM 396
++V LL+ + G+DS V +EM+ A T N ++ AY +
Sbjct: 446 NVCGLSPDIVTWNTLLA---VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 397 KDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
F+ + + V PD+ T + A
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
PS+ YNS+++ +S+ F ++ L E+ + P +Y+ +I AY + +
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
M+ G PD ITYN I +A + + G + M+ +T +I+D
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 289 YMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAEVYIKNY 328
Y D+ + F + L L+ P EDL +L E +K +
Sbjct: 779 YCKLNRKDEAKLFVEDLRNLDPHAPKGEDL--RLLERIVKKW 818
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 46/319 (14%)
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
II K G+ + A N ++E S +Y LI A+ Y E K M+ DG
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 240 CSPDHITYNLLIQEFACAG--------LLKRMEG--------TYKSMLT--KRMHLRSS- 280
C P ITYN+++ F G L+++M+ TY +++T KR L
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 281 -----------------TMVAILDAY-MNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKL 320
T A+LD Y + + M+ + +LN +P +V L
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP---SIVTYNSL 355
Query: 321 AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKV 379
Y ++ M +L + +A + + ++ LLS S+ EM +A
Sbjct: 356 ISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGC 415
Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTG 436
+ N+ T N + Y F + + E+ + PDIVT L + + + +G
Sbjct: 416 KPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSG 475
Query: 437 ALEMWKRIGFLFKTVEINT 455
+ KR GF+ + NT
Sbjct: 476 VFKEMKRAGFVPERETFNT 494
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I C M +A R F EM + P + YN+ I Y+ F EA+ + M +
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-LDGCSP 242
P +TY+ ++ Y K DE + ++ ++ LD +P
Sbjct: 765 CRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
+R F +I +C+EG +E A F+EM+ L P YNS+I G+ K+G+ ++ +
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
F EMK+M P TY+ LI + K+ + MK +G P+ ++Y+ L+ F
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377
Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
G++++ Y M + T +++DA G L + L
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR-----------LGN 426
Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
++++ E + Y + +D L D A R+ E + +M
Sbjct: 427 EMLQVGVEWNVVTYT-ALIDGLCD--AERMKEAE--------------------ELFGKM 463
Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
++A V N+ + N ++ ++K K+ LL+EL R +KPD++ G
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC+ M+EA F +M+ + P+L YN++IHG+ K + AL LNE+K
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P Y I + + + + MK G + + Y L+ + +G E
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG--NPTE 560
Query: 265 GTY--KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
G + M + + T ++D ++ K ++ R+ N
Sbjct: 561 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC++ +E A F++M L P Y S++ G K G EAL ++M E+
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
+ Y L+ + L+ M +G PD +
Sbjct: 679 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%)
Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
I C+ G +EEAV+ F +ME + P++ +N++I G G+++EA +F +M E +
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339
Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
P TY L++ + K + LK M G P+ I YN LI F AG L +
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399
Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
M++K + L SST ++ Y G D E+ K +L+
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 6/189 (3%)
Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
++ + W + +++ + + + +I C+ EE F EM ++P+ +YN
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 662
Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
+I Y + G+ + AL +MK +SP S TY LI+ +E + + M+++
Sbjct: 663 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 722
Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
G P+ Y LI + G + ++E + M +K +H T ++ Y G + +
Sbjct: 723 GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEA 782
Query: 299 EKFYKRLLN 307
RLLN
Sbjct: 783 S----RLLN 787
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 33/301 (10%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
++ S ++ LCE G ++EA R +E+ G YN++I G K +EA +F
Sbjct: 516 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 575
Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
L+EM + L P + TY LI +E K +G PD TY+++I C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID--GC 633
Query: 257 AGLLKRMEGT--YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
+ EG + M++K + + ++ AY G L+ L+E
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR-----------LSMALELRE 682
Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW-CLRL-------LSHACLLSHRG 366
D+ K + + ++ L G + SR+ +L++ +R+ + L+ G
Sbjct: 683 DMKHK--GISPNSATYTSLIK-GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 739
Query: 367 -------IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
++ ++REM S V N T +++ Y + + LL+E+ + + PD +
Sbjct: 740 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 799
Query: 420 T 420
T
Sbjct: 800 T 800
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 116 SSRSRQIPQVFD--MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
+ R+ + + FD M KN++ N +I C G + A+ ++M+ + P+
Sbjct: 636 AERTEEGQEFFDEMMSKNVQP---NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692
Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
Y S+I G S I + EA L EM+ L P Y LI YGK +++ L+
Sbjct: 693 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLR 752
Query: 234 MMKLDGCSPDHITYNLLIQEFA 255
M P+ ITY ++I +A
Sbjct: 753 EMHSKNVHPNKITYTVMIGGYA 774
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 18/212 (8%)
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+ P + ++ + I+ + K GK EA+ ++M+E ++P T++ +I G YDE
Sbjct: 268 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 327
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLRSSTMVAI 285
M + M G P ITY++L++ A KR+ Y K M K +
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS--- 342
+D+++ G L+K + +++ L L + Y KN + L ++ S
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444
Query: 343 --RIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
G V CL L SH DS +R
Sbjct: 445 NVNQGSFTSVICL-------LCSHLMFDSALR 469
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 145 IIGMLCEEGLMEEAVRA-FQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
+I LC+ G +A+ FQ + +GF + N+++HG + GK +EA E+
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTS--NALLHGLCEAGKLDEAFRIQKEILG 546
Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
+Y+ LI K DE M L M G PD+ TY++LI
Sbjct: 547 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Query: 67 LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIR-FLKNS---SRSRQI 122
L++S+ E +LN I+ + VS L + T + +I+ + KN + R +
Sbjct: 384 LIDSFIEAGSLNKAIEIKDLMVSKGLSL-------TSSTYNTLIKGYCKNGQADNAERLL 436
Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
++ + N+ N+ + +I +LC + + A+R EM + P + ++I
Sbjct: 437 KEMLSIGFNV-----NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 491
Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
G K GK ++AL + + T + L+ + DE K + GC
Sbjct: 492 GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM 551
Query: 243 DHITYNLLIQEFACAG 258
D ++YN LI C G
Sbjct: 552 DRVSYNTLIS--GCCG 565
Score = 39.3 bits (90), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 2/198 (1%)
Query: 112 FLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169
+K +R+++I + + K + K N +I E G + +A+ M
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408
Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229
L + YN++I GY K G+ + A L EM + + ++ +I + M+D
Sbjct: 409 LSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSAL 468
Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
+ M L SP LI G + + L K + + T A+L
Sbjct: 469 RFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGL 528
Query: 290 MNFGMLDKMEKFYKRLLN 307
G LD+ + K +L
Sbjct: 529 CEAGKLDEAFRIQKEILG 546
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 127/269 (47%), Gaps = 14/269 (5%)
Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
+P + Y+ +I + ++ F++ L++M+ + P + TY+ LI AYGK KM+ E++
Sbjct: 218 QPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMES 277
Query: 231 CL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
L +M+ D C PD T N ++ F G ++ ME Y+ + + T +LD+Y
Sbjct: 278 TLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSY 337
Query: 290 MNFG-------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
G +++ M+K++ + D + ++ Y+F + +
Sbjct: 338 GKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SE 391
Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
RI + + C + ++ I V+R +E++ +R ++ N ++ AY +M+ F +
Sbjct: 392 RIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEM 451
Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIG 431
+ +L + + KPD +T + A RI
Sbjct: 452 KGVLELMEKKGFKPDKITYRTMVKAYRIS 480
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G +E +++ + ++P++ +N ++ Y K G + + + M++ + S TY
Sbjct: 306 GQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTY 365
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
+ +I A+G+ +++ ++M+ + P +T L++ + A ++ G + +
Sbjct: 366 NVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIEN 425
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
+ L ++DAY +MEKF
Sbjct: 426 SDIRLDLVFFNCLVDAY------GRMEKF 448
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%)
Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
M+ + ++ YN +I + + G + M+ + P T L++AYG+
Sbjct: 353 MQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASK 412
Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
D+I L+ ++ D + +N L+ + M+G + M K T
Sbjct: 413 ADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRT 472
Query: 285 ILDAYMNFGM 294
++ AY GM
Sbjct: 473 MVKAYRISGM 482
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 26/327 (7%)
Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
+ +I L G + A R F+ ++ ++++I Y + G EA+ N MK
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295
Query: 202 EMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
E L P TY+ +I A GK M + ++ M+ +G PD IT+N L+ + GL
Sbjct: 296 EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLW 355
Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
+ + M +R+ + +LDA G +D + ++ P+K R +
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM-----PVK----RIM 406
Query: 321 AEVYIKNYMFSRLDDLG--DDLASRIGRTE-LVWCLRLLSHACLLS--------HRGIDS 369
V + + G D+ + G L L +S+ LLS +D
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALD- 465
Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
++REM S ++ +V T N +L Y K + ++ + +E+ HV P+++T L D
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525
Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTD 456
G A+E+++ FK+ + D
Sbjct: 526 KGGLYKEAMEIFRE----FKSAGLRAD 548
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 28/315 (8%)
Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
Q+ F++ + RI N + +I + G +EA+ F EM + YN
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448
Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
+++ Y+K+G+ EAL L EM + + TY+ L+ YGK YDE+ MK +
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508
Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV--AILDAYMNFGMLD 296
P+ +TY+ LI ++ GL K ++ K LR+ ++ A++DA G++
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF--KSAGLRADVVLYSALIDALCKNGLVG 566
Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA--------SRIGRTE 348
+ + + + ++ R D + + S + TE
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETE 626
Query: 349 LVWCLRLLSHACLLSHRG--------------IDSVVREMESAKVRWNVTTANIILLAYL 394
++L S+ I V R+M +++ NV T + IL A
Sbjct: 627 GNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686
Query: 395 KMKDFKHLRVLLSEL 409
+ F+ +LL EL
Sbjct: 687 RCNSFEDASMLLEEL 701
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
++ W R L + +R+I Q + F+ ++ +C+ G M+ A
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQ-------------DVFSYNTLLDAICKGGQMDLAFEI 396
Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
+M + P++ Y+++I G++K G+F+EAL EM+ + ++ +Y+ L+ Y K
Sbjct: 397 LAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTK 456
Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS- 280
+E L+ M G D +TYN L+ + G ++ + M KR H+ +
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM--KREHVLPNL 514
Query: 281 -TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLG 337
T ++D Y G+ + + ++ ++ L+ D+V L + KN + L
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSA--GLRADVVLYSALIDALCKNGLVGSAVSLI 572
Query: 338 DDL 340
D++
Sbjct: 573 DEM 575
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 6/277 (2%)
Query: 120 RQIPQVFD-MWKN-IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
+Q+ + FD M +N ++ RI FNS ++ + GL E A F EM ++ + Y
Sbjct: 321 KQVAKFFDEMQRNGVQPDRIT-FNS--LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSY 377
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
N+++ K G+ + A L +M + P +Y +I + K +DE M+
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
G + D ++YN L+ + G + + M + + T A+L Y G D+
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497
Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357
++K + + L + Y K ++ ++ + S R ++V L+
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALID 557
Query: 358 HACLLSHRGID-SVVREMESAKVRWNVTTANIILLAY 393
C G S++ EM + NV T N I+ A+
Sbjct: 558 ALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 145/349 (41%), Gaps = 12/349 (3%)
Query: 128 MWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
+++ I +S IN + ++ LC++G ME+ +++ + P + YN++I YS
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281
Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
G EA +N M SP TY+ +I K+ Y+ M G SPD
Sbjct: 282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341
Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
TY L+ E G + E + M ++ + +++ + G LDK ++ +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401
Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
+ + L + Y + M S +L +++ + ++V +L C
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461
Query: 366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
G D + EM + + T I++ + K+ + ++ L ++ + ++ D+VT L
Sbjct: 462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521
Query: 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDP-----LVLAVYGKGHF 468
D GF G ++ K I + EI P LV A+ KGH
Sbjct: 522 LD----GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 118/277 (42%), Gaps = 3/277 (1%)
Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
C++G + E + F +M + P L ++S++ +++ G ++AL++ N +KE L P +
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
Y LIQ Y + M M GC+ D +TYN ++ +L + +
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329
M + + S T+ ++D + G L + ++++ R L L + + K
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 330 FSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAKVRWNVTTAN 387
++ D+ S+ I T + + + L++ C H V EM S ++ V N
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSI-LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
++ Y + + L ++ + PD ++ L
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 185/442 (41%), Gaps = 45/442 (10%)
Query: 72 HEHQALNALIQ------RLNKKVSCPLQILQHDG----------DWTKDH-------FWA 108
H +L+A+I RL+ SC L++++ G D T + F
Sbjct: 111 HTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDL 170
Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
+IR + + R+ + F + ++ + ++ +IG L G +E A +QE+
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRS-KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+ ++ N +++ K GK + FL++++E + P TY+ LI AY + +E
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+ M G SP TYN +I G +R + + ML + S+T ++L
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-------A 341
G + + EK + + SR D+V L +F+R +L L
Sbjct: 350 ACKKGDVVETEKVFSD-MRSR-----DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVV----REMESAKVRWNVTTANIILLAYLKMK 397
+ + +++ + L+ C +G+ SV EM +V T N IL K K
Sbjct: 404 AGLIPDNVIYTI-LIQGYC---RKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459
Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457
L +E+ R + PD T+ IL D + A+E+++++ +++ T
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519
Query: 458 LVLAVYGKGHFLRYCEEVYSSL 479
+L +GK + +E+++ +
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADM 541
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ LC +G + EA R + EM +KP++ I NS+I GY + G ++ FL +M
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHITYNLLIQEFACAGLLKR 262
P +Y+ LI + + + + +K M+ + G PD TYN ++ F +K
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675
Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
E + M+ + ++ ST +++ +++
Sbjct: 676 AEVVLRKMIERGVNPDRSTYTCMINGFVS 704
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 118 RSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
R + + F + K +E+ + + F I+ C + M+EA ++M + P
Sbjct: 632 REENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
Y +I+G+ EA +EM + SP
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 9/240 (3%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I + E G +E V F +M ++P +E Y II K G +A L M +
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P S Y G+I+A+G+ +Y+E + M G +P T++ L+ FA GL+K E
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESE 512
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
++ + T A ++AY G ++ K Y + SR D + E
Sbjct: 513 AILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC----DPDERTLEAV 568
Query: 325 IKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
+ Y F+RL D + AS I + + +C+ L + ++ ++ EM S +V
Sbjct: 569 LSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ + + G ++ + F EM+ P YN +I + + G F E + ++M E N
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P +TY+G+I A GK ++++ L+ M + P Y +I+ F A L +
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
+ +M + T ++L ++ G++ + E RL++S P D E Y
Sbjct: 478 VAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAY 537
Query: 325 IKNYMF 330
+ F
Sbjct: 538 KQGGKF 543
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 58/407 (14%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I +L EGL+++ + F EM + S+ Y ++I+ Y + G++ +L L+ MK
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK 206
Query: 205 LSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
+SP TY+ +I A + + ++ + M+ +G PD +TYN L+ A GL
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEA 266
Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYM----NFGMLDKMEKFYKRL--LNSRTPLKE-DL 316
E +++M +V L Y FG L ++EK L + S L +
Sbjct: 267 EMVFRTM-------NDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319
Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---- 372
L E Y K+ + + + G T +L + L G VR
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQA-AGCTPNANTYSVLLN--LFGQSGRYDDVRQLFL 376
Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-GILY------ 425
EM+S+ + T NI++ + + FK + L ++ +++PD+ T GI++
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436
Query: 426 ---DARRI--------------GFDGT----GALEMWKRIGFLFKTV-EINTDPLV---- 459
DAR+I + G G +++ F T+ E+ ++P +
Sbjct: 437 LHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFH 496
Query: 460 --LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK 504
L + +G ++ E + S L + R T+ I+ K GK
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIE-AYKQGGK 542
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 2/236 (0%)
Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA-FQE 164
+ A+I + R ++ D KN EK + +I GL E + F E
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAE 237
Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
M ++P + YN+++ + G +EA + M + + P TY L++ +GK +
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284
+++ L M G PD +YN+L++ +A +G +K G + M ++T
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
+L+ + G D + + + + +S T L EV+ + F + L D+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 15/340 (4%)
Query: 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSI 180
I + D++KN K +N+F + G + ++R F+ M+ KP+ IY +
Sbjct: 92 IARCLDIFKN--KLSLNDF--ALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIM 147
Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
I + G ++ L +EM +S +Y LI AYG+ Y+ L MK +
Sbjct: 148 ISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207
Query: 241 SPDHITYNLLIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
SP +TYN +I A GL + + G + M + + T +L A G+ D+ E
Sbjct: 208 SPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267
Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSH 358
++ + + L E + K ++ DL ++AS ++ + + L ++
Sbjct: 268 MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAY 327
Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
A S + V +M++A N T +++L + + + +R L E+ + + PD
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387
Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLF-KTVEINTDP 457
T IL I G G +K + LF VE N +P
Sbjct: 388 ATYNIL-----IEVFGEGGY--FKEVVTLFHDMVEENIEP 420
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/270 (18%), Positives = 110/270 (40%), Gaps = 22/270 (8%)
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
C P+ Y ++I GLL + + M ++ + + A+++AY G +
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196
Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG----------RTEL 349
+ R+ N + + N + + G D +G + ++
Sbjct: 197 ELLDRMKNEKIS---------PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247
Query: 350 VWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
V LLS AC + G ++ V R M + ++TT + ++ + K++ + + LL
Sbjct: 248 VTYNTLLS-ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLG 306
Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467
E+ + PDI + +L +A A+ ++ ++ T NT ++L ++G+
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366
Query: 468 FLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
+++ ++ + + TY LI++
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEV 396
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
+ FN+Q I + G EEAV+ + +ME P +++ YS +E
Sbjct: 528 DTFNAQ--IEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQF 585
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
EMK ++ P Y ++ YGK + +D+++ L+ M
Sbjct: 586 EEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G +EEA QEM+ + P + Y ++I GY GK +AL ++EM +SP TY
Sbjct: 402 GRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY 461
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
+ L+ + +E+ + MK +G P+ +T +++I+ A +K E + S+
Sbjct: 462 NVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEVYIKNYMFS 331
K ++S + Y G+ K K + RL PL++ + KL + I+ Y+
Sbjct: 522 KCPENKAS----FVKGYCEAGLSKKAYKAFVRL---EYPLRKSVYIKLFFSLCIEGYLEK 574
Query: 332 RLDDLGDDLASRI--GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANI 388
D L A R+ GR+ C +++ C L++ R + M + ++ T I
Sbjct: 575 AHDVLKKMSAYRVEPGRS---MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTI 631
Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
++ Y ++ + + L ++ R +KPD+VT +L D
Sbjct: 632 MIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
K+ LC EG +E+A ++M + ++P + +I + K+ EA + + M E
Sbjct: 561 KLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVER 620
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
L P TY +I Y + + + + MK G PD +TY +L+ +
Sbjct: 621 GLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRY 671
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 127 DMWKNIEKSRINEFNSQ--KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
D+ K + R+ S K+IG C+ + EA F M L P L Y +IH Y
Sbjct: 577 DVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTY 636
Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
++ + +A +MK+ + P TY L+ Y K
Sbjct: 637 CRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLK 673
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 114/249 (45%), Gaps = 1/249 (0%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ EGL E+A F++++ L+P + +YN+++ YS+ G A + M+ M
Sbjct: 305 LVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMG 364
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P +Y+ ++ AYG+ ++ + + + MK G +P ++ LL+ ++ A + + E
Sbjct: 365 CEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCE 424
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
K M + + + ++L+ Y G KMEK + N L +Y
Sbjct: 425 AIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIY 484
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELV-WCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
K R+++L +L + R ++V W R+ +++ + V EM + +
Sbjct: 485 GKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDG 544
Query: 384 TTANIILLA 392
TA ++L A
Sbjct: 545 GTAKVLLSA 553
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 5/279 (1%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
I G++ +G EEA+ FQ M+ KP+ E YN +I+ Y K K + EM+
Sbjct: 235 IEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQ 294
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P TY L+ A+ + + ++ + + ++ DG PD YN L++ ++ AG
Sbjct: 295 CKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAA 354
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL--LNSRTPLKEDLVRKLAE 322
+ M ++ ++DAY G+ E ++ + L +K ++ L
Sbjct: 355 EIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHML--LLS 412
Query: 323 VYIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
Y K ++ + + +++ + V L + L ++ ++ EME+
Sbjct: 413 AYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA 472
Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
+++T NI++ Y K + + L EL ++ +PD+VT
Sbjct: 473 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 511
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 140/362 (38%), Gaps = 82/362 (22%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKP---SLEIYNSIIHGYSK-IGKFNEALLFLNEM 200
+I C GL+E A EM+ + P + +YN+ I G K G EA+ M
Sbjct: 196 LIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRM 255
Query: 201 KEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
K P ++TY+ +I YGK +K+Y E M+ C P+ TY L+
Sbjct: 256 KRDRCKPTTETYNLMINLYGKASKSYMSWKLYCE-------MRSHQCKPNICTYTALVNA 308
Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
FA GL ++ E ++ + + A++++Y G
Sbjct: 309 FAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGY------------------- 349
Query: 314 EDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371
Y +FS + +G D AS + + + ++ H ++V
Sbjct: 350 ---------PYGAAEIFSLMQHMGCEPDRAS--------YNIMVDAYGRAGLHSDAEAVF 392
Query: 372 REMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
EM+ + + + ++L AY K +D ++ E+ V+PD + +
Sbjct: 393 EEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM------- 445
Query: 432 FDGTGALEMWKRIGFLFK-------------TVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
L ++ R+G K T +I+T +++ +YGK FL EE++
Sbjct: 446 ------LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVE 499
Query: 479 LE 480
L+
Sbjct: 500 LK 501
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
+ EME + YN +I+ Y K G E+KE N P T+ I AY
Sbjct: 460 KILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAY 519
Query: 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+ K+Y + + M GC+PD T +L+ AC+
Sbjct: 520 SRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLS--ACS 555
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 128/320 (40%), Gaps = 39/320 (12%)
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
+++ + P ++ LI AYG+ Y E + + P TY LLI+ + AGL
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 260 LKRMEGTYKSMLTKRMHLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
++R E M + H+ T+ V + +AY+ G++ K + + ++ +K D +
Sbjct: 206 IERAEVVLVEM--QNHHVSPKTIGVTVYNAYIE-GLM-KRKGNTEEAIDVFQRMKRDRCK 261
Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL--RLLSHAC------------LLSH 364
E Y N M +L + ++ + W L + SH C +
Sbjct: 262 PTTETY--NLMI--------NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 311
Query: 365 RGI----DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
G+ + + +++ + +V N ++ +Y + + S + +PD +
Sbjct: 312 EGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 371
Query: 421 IGILYDA-RRIGF--DGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477
I+ DA R G D E KR+G + + L+L+ Y K + CE +
Sbjct: 372 YNIMVDAYGRAGLHSDAEAVFEEMKRLGI---APTMKSHMLLLSAYSKARDVTKCEAIVK 428
Query: 478 SLEPYSREKKRWTYQNLIDL 497
+ E + ++++L
Sbjct: 429 EMSENGVEPDTFVLNSMLNL 448
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
NE ++ ++G M EA R +EM PS+ YN++I+G+ GK +A+ L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+MKE LSP +Y ++ + + DE + M G PD ITY+ LIQ F
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
K Y+ ML + T A+++AY G L+K + + ++
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
++E +I C+EG +A+ EM L PS+ Y S+IH K G N A+ F
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
L++M+ L P TY L+ + + +E L+ M +G SP +TYN LI
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 257 AG 258
G
Sbjct: 428 TG 429
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 17/311 (5%)
Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
R I +++K + +S++ N F +I C G ++ A+ F +ME P++ Y
Sbjct: 184 RNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTY 243
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
N++I GY K+ K ++ L M L P +Y+ +I + E+ L M
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
G S D +TYN LI+ + G + + ML + T +++ + G +++
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363
Query: 298 MEKFYKRL------LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
+F ++ N RT LV ++ N + L ++ D+ G + V
Sbjct: 364 AMEFLDQMRVRGLCPNERT--YTTLVDGFSQKGYMNEAYRVLREMNDN-----GFSPSVV 416
Query: 352 CLRLLSHACLLSHRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
L + ++ + D +V+ +M+ + +V + + +L + + D + E+
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 410 PTRHVKPDIVT 420
+ +KPD +T
Sbjct: 477 VEKGIKPDTIT 487
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
R+ + D+++ + + + +EF +I C EG +E+A++ EM + P + Y
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD---------------GLIQAYGKY 222
+ +I+G +K + EA L ++ P TY LI+ +
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618
Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
M E D + M PD YN++I AG +++ YK M+ L + T+
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTV 678
Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341
+A++ A G ++++ +L S + + + L E+ N+ +D + D LA
Sbjct: 679 IALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI---NHREGNMDVVLDVLA 734
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 108/274 (39%), Gaps = 28/274 (10%)
Query: 34 VFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTL----------LVESYHEHQALNALIQR 83
+F KTLIR+ +S +S+PS + K T L ++ A N L++
Sbjct: 1 MFLTKTLIRRSLS--TFASSPSDSLLADKALTFLKRHPYQLHHLSANFTPEAASNLLLKS 58
Query: 84 LNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143
N + + L+ L +W H + +R + I F ++K + ++
Sbjct: 59 QNDQ-ALILKFL----NWANPHQFFTLRC---KCITLHILTKFKLYKTA------QILAE 104
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
+ ++ ++ QE S +++ ++ YS++ ++AL ++ +
Sbjct: 105 DVAAKTLDDEYASLVFKSLQETYDLCYSTS-SVFDLVVKSYSRLSLIDKALSIVHLAQAH 163
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
P +Y+ ++ A + K + K M SP+ TYN+LI+ F AG +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
+ M TK T ++D Y +D
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKID 257
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 122/253 (48%), Gaps = 10/253 (3%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
+EE F EM LKPS YN ++ Y++ + + L EM+++ L P +Y
Sbjct: 395 IEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTC 454
Query: 215 LIQAYGKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
LI AYG+ K ++ D L+M K+ G P +Y LI ++ +G ++ +++ M
Sbjct: 455 LISAYGRTKKMSDMAADAFLRMKKV-GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCK 513
Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
+ + T ++LDA+ G K+ + +K +L + L + + K ++
Sbjct: 514 EGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIE 573
Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANI 388
D+ + S++G V +L +A + G D+ +++EM + ++ + T +
Sbjct: 574 ARDVVSEF-SKMGLQPSVMTYNMLMNA--YARGGQDAKLPQLLKEMAALNLKPDSITYST 630
Query: 389 ILLAYLKMKDFKH 401
++ A+++++DFK
Sbjct: 631 MIYAFVRVRDFKR 643
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 118 RSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
RS ++ ++WK + EK + ++ ++GL EA E L+PS+
Sbjct: 532 RSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVM 591
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
YN +++ Y++ G+ + L EM +NL P S TY +I A+ + + + KMM
Sbjct: 592 TYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMM 651
Query: 236 KLDGCSPDHITYNLL 250
G PD +Y L
Sbjct: 652 VKSGQVPDPRSYEKL 666
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G E+A +F+EM +KPS+E Y S++ + + G + + M + TY
Sbjct: 499 GWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITY 558
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
+ L+ + K +Y E + G P +TYN+L+ +A G ++ K M
Sbjct: 559 NTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAA 618
Query: 273 KRMHLRSSTMVAILDAYM 290
+ S T ++ A++
Sbjct: 619 LNLKPDSITYSTMIYAFV 636
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 34/288 (11%)
Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDG 214
++A ++ M+ + P +I K G+ E +M E + D + G
Sbjct: 290 DDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGG 349
Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
L++++ + +E + M+ G + I YN L+ + + ++ +EG + M K
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKG 409
Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
+ ++T ++DAY D +E + + EDL E +K+Y
Sbjct: 410 LKPSAATYNILMDAYARRMQPDIVETLLREM--------EDLG---LEPNVKSYTC---- 454
Query: 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394
L S GRT+ +S D+ +R M+ ++ + + ++ AY
Sbjct: 455 -----LISAYGRTKK------------MSDMAADAFLR-MKKVGLKPSSHSYTALIHAYS 496
Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
+ E+ +KP + T + DA R D +E+WK
Sbjct: 497 VSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWK 544
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 139/344 (40%), Gaps = 43/344 (12%)
Query: 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161
T D + ++I S + + K++ + + F +I C+ G +
Sbjct: 128 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187
Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYG 220
EM + S YN+II GY K G F E L +M E S P T + +I +YG
Sbjct: 188 VLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYG 247
Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
+ +++ +L G PD T+N+LI F AG+ K+M M + L +
Sbjct: 248 NGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTV 307
Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
T +++ + G ++KM +D+ RK+ +K
Sbjct: 308 TYNIVIETFGKAGRIEKM---------------DDVFRKMKYQGVK-------------- 338
Query: 341 ASRIGRTELVWC--LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
+ +C + S A L+ IDSV+R++ ++ V + N I+ AY + D
Sbjct: 339 -----PNSITYCSLVNAYSKAGLVVK--IDSVLRQIVNSDVVLDTPFFNCIINAYGQAGD 391
Query: 399 FKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALE 439
++ L ++ R KPD +T + Y A I FD LE
Sbjct: 392 LATMKELYIQMEERKCKPDKITFATMIKTYTAHGI-FDAVQELE 434
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 90/188 (47%), Gaps = 3/188 (1%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
ME FQ M ++P + +N +I + K G + + ++ M++ S + TY+
Sbjct: 255 MESWYSRFQLM---GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNI 311
Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
+I+ +GK +++D + MK G P+ ITY L+ ++ AGL+ +++ + ++
Sbjct: 312 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 371
Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334
+ L + I++AY G L M++ Y ++ + + + + Y + +F +
Sbjct: 372 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 431
Query: 335 DLGDDLAS 342
+L + S
Sbjct: 432 ELEKQMIS 439
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
+V F E F+L + YN +I + K G+ + +MK + P S TY L+
Sbjct: 292 SVMDFMEKRFFSL--TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVN 349
Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
AY K + +ID L+ + D +N +I + AG L M+ Y M ++
Sbjct: 350 AYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKP 409
Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
T ++ Y G+ D +++ K++++S
Sbjct: 410 DKITFATMIKTYTAHGIFDAVQELEKQMISS 440
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I + G +E+ F++M+ +KP+ Y S+++ YSK G + L ++ +
Sbjct: 312 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 371
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ + ++ +I AYG+ + M+ C PD IT+ +I+ + G+ ++
Sbjct: 372 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 431
Query: 265 GTYKSMLTKRMHL 277
K M++ +L
Sbjct: 432 ELEKQMISSGENL 444
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 176/442 (39%), Gaps = 24/442 (5%)
Query: 74 HQALNALIQRLNK--KVSCPLQILQHDGDWTKDH----FWAVIRFLKNSSRSRQIPQVFD 127
A+++L++ L K K+ L +++ D+ + A+I L + + +FD
Sbjct: 332 EAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFD 391
Query: 128 MWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187
I R N+ +I M C G ++ A+ EM LK S+ YNS+I+G+ K
Sbjct: 392 RMGKI-GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKF 450
Query: 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDH 244
G + A F+ EM L P TY L+ G Y +I+ L++ M G +P
Sbjct: 451 GDISAAEGFMAEMINKKLEPTVVTYTSLM---GGYCSKGKINKALRLYHEMTGKGIAPSI 507
Query: 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304
T+ L+ AGL++ + M + T +++ Y G + K +F K
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567
Query: 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLS 363
+ R L S D L G EL C L H
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK--GNCELNEICYTGLLHGFCRE 625
Query: 364 HRGID--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI 421
+ + SV +EM V ++ +++ LK KD K LL E+ R +KPD V
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIY 685
Query: 422 GILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
+ DA+ D A +W + G + V T V+ K F+ E + S
Sbjct: 686 TSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV---TYTAVINGLCKAGFVNEAEVLCSK 742
Query: 479 LEPYSREKKRWTYQNLIDLVIK 500
++P S + TY +D++ K
Sbjct: 743 MQPVSSVPNQVTYGCFLDILTK 764
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 3/271 (1%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC+ E + EM PS +S++ G K GK EAL + + + +SP
Sbjct: 307 LCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPN 366
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
Y+ LI + K + + E ++ M G P+ +TY++LI F G L
Sbjct: 367 LFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLG 426
Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328
M+ + L ++++ + FG + E F ++N + L Y
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG 486
Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTA 386
++ L ++ + G ++ L + D+V EM V+ N T
Sbjct: 487 KINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTY 545
Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
N+++ Y + D L E+ + + PD
Sbjct: 546 NVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 139/347 (40%), Gaps = 16/347 (4%)
Query: 106 FWAVIRFL---KNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVR 160
+ VIR L K+ SR+++ M ++E + +N +I LC++ + EAV
Sbjct: 230 YTGVIRSLCELKDLSRAKE------MIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVG 283
Query: 161 AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220
+++ G LKP + Y ++++G K+ +F L ++EM + SP L++
Sbjct: 284 IKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLR 343
Query: 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
K +E +K + G SP+ YN LI E + M +
Sbjct: 344 KRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDV 403
Query: 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340
T ++D + G LD F ++++ L L + K S + ++
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Query: 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVR---EMESAKVRWNVTTANIILLAYLKMK 397
++ +V L+ C S I+ +R EM + ++ T +L +
Sbjct: 464 INKKLEPTVVTYTSLMGGYC--SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521
Query: 398 DFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
+ L +E+ +VKP+ VT ++ + D + A E K +
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Query: 117 SRSRQIPQVFDMWKNI--EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
S++ + F +W + E NE +I LC+ G + EA +M+ + P+
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752
Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
Y + +K + + L+ L + TY+ LI+ + + +E +
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITR 812
Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
M DG SPD ITY +I E +K+ + SM K
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEK 851
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+L P + ++++HG K F A+ N+M + + P Y G+I++ + K
Sbjct: 187 SLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRA 246
Query: 229 DMCLKMMKLDGCSPDHITYNLLI 251
+ M+ GC + + YN+LI
Sbjct: 247 KEMIAHMEATGCDVNIVPYNVLI 269
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 146/357 (40%), Gaps = 35/357 (9%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK----EMNLSPQSDTYD 213
A+ F +M ++P + IY +I ++ + A + M+ ++N+ P + D
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLID 270
Query: 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL------IQEFACAGLLKRMEGTY 267
GL + K K+++ + + + D PD +TY L +QEF L+ M+
Sbjct: 271 GLCK---KQKVWEAVGIKKDLAGKD-LKPDVVTYCTLVYGLCKVQEFEIG--LEMMD--- 321
Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
ML R + + ++++ G +++ KR+++ + L + K
Sbjct: 322 -EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 380
Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-ID---SVVREMESAKVRWNV 383
F + L D + R V L+ C RG +D S + EM ++ +V
Sbjct: 381 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFC---RRGKLDTALSFLGEMVDTGLKLSV 437
Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG----ALE 439
N ++ + K D ++E+ + ++P +VT Y + G+ G AL
Sbjct: 438 YPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT----YTSLMGGYCSKGKINKALR 493
Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
++ + I T +L+ + +R ++++ + ++ + R TY +I+
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC +++A+ + M ++P YN++IHG G+ +A NEM
Sbjct: 828 MINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887
Query: 205 LSPQSDT 211
L P + T
Sbjct: 888 LIPNNKT 894
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I C +G +EEA M G + P Y ++I+ + +A+ N M E
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852
Query: 205 LSPQSDTYDGLIQA 218
+ P Y+ LI
Sbjct: 853 IRPDRVAYNTLIHG 866
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FNS II C+EG + E+ + F+ M +KP++ YN++I+GY GK +EA+ L+
Sbjct: 479 FNS--IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M + L P + TY LI Y K ++ + K M+ G SPD ITYN+++Q GL
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ-----GL 591
Query: 260 LKRMEGTYKSMLTKRMHLR 278
+ T ++ K +++R
Sbjct: 592 FQ----TRRTAAAKELYVR 606
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 158/392 (40%), Gaps = 79/392 (20%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS----------------------- 185
LC+ G EA + F M LKP + Y +++ GY+
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 186 ------------KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
K GK ++A+L ++M++ L+P + TY +I K ++ + +
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
M +G SP +I YN LI +R E ML + + L + +I+D++ G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490
Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRTELVWC 352
+ + EK ++ ++ R +K +++ I Y + ++D+
Sbjct: 491 RVIESEKLFELMV--RIGVKPNVITY--NTLINGYCLAGKMDE----------------A 530
Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
++LLS M S ++ N T + ++ Y K+ + VL E+ +
Sbjct: 531 MKLLSG---------------MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575
Query: 413 HVKPDIVTIGI----LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468
V PDI+T I L+ RR A E++ RI +E++T ++L K
Sbjct: 576 GVSPDIITYNIILQGLFQTRRT----AAAKELYVRITESGTQIELSTYNIILHGLCKNKL 631
Query: 469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
+++ +L + + T+ +ID ++K
Sbjct: 632 TDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 2/166 (1%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
+NS II LC+ M++A+ M + P YNSI+HGY G+ EA+ FL +
Sbjct: 234 YNS--IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M+ + P TY L+ K E M G P+ TY L+Q +A G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
L M G M+ +H ++ AY G +D+ + ++
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N +IG+LC+ G +E+A+ F++M L P +YNS+IHG K+ A +
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
EM + + + ++ +I ++ K E + ++M G P+ ITYN LI + A
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
G + M++ + + T +++ Y ++ +K + +S
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I +EG ++A + EM + P + YNSII K ++A+ LN M +
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P TY+ ++ Y E LK M+ DG PD +TY+LL+ G
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
+ SM + + +T +L Y G L +M
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEM---EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
N F+ ++ LC+E +EA+ M G P + Y ++I+G+ K G ++A
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
+EM + + P TY+ +I A K + D+ L M +G PD +TYN ++ +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 255 ACAGLLKRMEGTYKSM 270
+G K G K M
Sbjct: 277 CSSGQPKEAIGFLKKM 292
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 124/328 (37%), Gaps = 19/328 (5%)
Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVR-AFQEMEGFALKPSL 174
R+ ++ F N+ K R++ ++ LC + +A+ + M P++
Sbjct: 99 RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158
Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231
YN ++ G + EAL L+ M + P +Y +I + K D+
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291
M G PD +TYN +I A + + +M+ + T +IL Y +
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278
Query: 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
G + F K++ + L + KN + D + R + E+
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 352 CLRLLS-----HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
LL A + H +D +VR + + +I++ AY K ++
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRN----GIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 407 SELPTRHVKPDIVT----IGILYDARRI 430
S++ + + P+ VT IGIL + R+
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRV 422
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 157 EAVRAF-QEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
E VR + +M+G +P++ YN ++ +++ GK ++ ++ +SP T++G
Sbjct: 189 EKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNG 248
Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
++ AYGK M E++ L M+ + C PD IT+N+LI + ++ME T+KS++ +
Sbjct: 249 VMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSK 308
Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
T +++ Y M+DK E +K++
Sbjct: 309 EKPTLPTFNSMIINYGKARMIDKAEWVFKKM 339
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 170/411 (41%), Gaps = 41/411 (9%)
Query: 37 AKTLIRKPISCCCLSSAPSLDYHST--KHTTLLVESY----HEHQALNALIQRLNKKVSC 90
A+ R I+C +SS L + + +LV S + + L + + K V C
Sbjct: 38 ARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRC 97
Query: 91 PLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGML 149
DH + + L S + Q +VF W ++ I + K+I ++
Sbjct: 98 -------------DHCFLLFEELGKSDKWLQCLEVF-RWMQKQRWYIPDNGVYSKLISVM 143
Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSII----HGYSKIGKFNEALLFLNEMKEMN- 204
++G A+ F EM+ +P +YN++I H K + +L++MK +
Sbjct: 144 GKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIER 203
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P TY+ L++A+ + D+++ K + + SPD T+N ++ + G++K ME
Sbjct: 204 CQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEME 263
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
M + T ++D+Y +KME+ +K L+ S KE
Sbjct: 264 AVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRS----KEKPTLPTFNSM 319
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL---SHRGIDSVVREM-----ES 376
I NY +R+ D + + ++ ++ + +++ C++ + G S RE+ ES
Sbjct: 320 IINYGKARMIDKAEWVFKKM--NDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGES 377
Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+V +T N +L Y + + L V PD T LY A
Sbjct: 378 DRV-LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 121 QIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
++ Q F + ++ EK + FNS +I + ++++A F++M PS Y
Sbjct: 296 KMEQTFKSLMRSKEKPTLPTFNS--MIINYGKARMIDKAEWVFKKMNDMNYIPSFITYEC 353
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
+I Y G + A E+ E + ++ T + +++ Y + +Y E D
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFR 413
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
PD TY L + + A + ++++ K M
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEQVQILMKKM 444
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
++++ ++++ + V +V T N ++ AY K K + +L+ + + KPDI+T +L D
Sbjct: 227 VNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLID 286
Query: 427 A--RRIGFDGTGALEMWKRIGFLFKTVEINTDPL---VLAVYGKGHFLRYCEEVYSSL 479
+ ++ F+ +M + L ++ E T P ++ YGK + E V+ +
Sbjct: 287 SYGKKQEFE-----KMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKM 339
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
N+++ Y + G + EA + + P + TY L +AY K M +++ + +K M+
Sbjct: 387 NAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEK 446
Query: 238 DGCSPD 243
DG P+
Sbjct: 447 DGIVPN 452
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
NV T NI+L A+ + + L +L V PD+ T + DA + G ++
Sbjct: 207 NVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDA----YGKNGMIKEM 262
Query: 442 KRIGFLFKTVEINTDPLVLAV----YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDL 497
+ + ++ E D + V YGK E+ + SL R K++ T +
Sbjct: 263 EAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSL---MRSKEKPTLPTFNSM 319
Query: 498 VIKH 501
+I +
Sbjct: 320 IINY 323
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 48/337 (14%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
++F + +I LC EG A+ F E G +KP++ +YN++I G S G EA
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
NEM E L P+ T++ L+ K + D +K+M G PD T+N+LI ++
Sbjct: 415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS-- 472
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKED 315
L+ + ILD ++ G +D Y LLN +T ED
Sbjct: 473 -----------------TQLKMENALEILDVMLDNG-VDPDVYTYNSLLNGLCKTSKFED 514
Query: 316 LV---RKLAEVYIKNYMFS------------RLDD---LGDDLASRIGRTELVWCLRLLS 357
++ + + E +F+ +LD+ L +++ ++ + V L+
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLID 574
Query: 358 HACLLSH-RGIDSVVREMESA-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
C G ++ R+ME A KV + T NII+ A+ + + L E+ R +
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634
Query: 416 PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVE 452
PD T ++ D GF TG + + + FL + +E
Sbjct: 635 PDGYTYRLMVD----GFCKTGNVNLGYK--FLLEMME 665
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 3/285 (1%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
++ FN K++ +LC++G ++E + ++ + P+L YN I G + G+ + A+
Sbjct: 216 LSTFN--KLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRM 273
Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
+ + E P TY+ LI K + E ++ L M +G PD TYN LI +
Sbjct: 274 VGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK 333
Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
G+++ E + T +++D + G ++ + L L
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393
Query: 317 VRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREME 375
L + M L ++++ + E+ L++ C + D +V+ M
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453
Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
S ++ T NI++ Y ++ +L + V PD+ T
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 38/293 (12%)
Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
+G ++EAV F+ M+ + +P++ YN+I+ G F++A M++ ++P +
Sbjct: 89 KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYS 148
Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
+ ++++ K L M GC + + Y ++ F + ML
Sbjct: 149 FTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKML 208
Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
+ L ST +L R+L + +KE KL + IK +
Sbjct: 209 ASGVSLCLSTFNKLL-----------------RVLCKKGDVKE--CEKLLDKVIKRGVLP 249
Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
L + R EL +R++ CL+ + +V T N ++
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMV--GCLIEQ-------------GPKPDVITYNNLIY 294
Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
K F+ V L ++ ++PD T Y+ G+ G +++ +RI
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYT----YNTLIAGYCKGGMVQLAERI 343
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 31/288 (10%)
Query: 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213
L+ E++RA GF KP + +NS+ +G+SK+ +E +++ M + SP TY
Sbjct: 112 LVLESLRASH---GFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKC-CSPNVVTYS 167
Query: 214 GLIQAYGKYKMYDEIDMCLKM---MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
I + K E+ + LK MK D SP+ +T+ LI + AG L+ YK M
Sbjct: 168 TWIDTFCKSG---ELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224
Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY--IKNY 328
RM L T A++D + G + + E+ Y R++ ED V + VY I +
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMV-------EDRVEPNSLVYTTIIDG 277
Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRL--LSHACLLSH-------RGIDSVVREMESAKV 379
F R D D A + L +RL ++ ++S + +V +ME + +
Sbjct: 278 FFQRGDS---DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL 334
Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
++ ++ AY K K + +L R +PD+V + + D
Sbjct: 335 VPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDG 382
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 138/330 (41%), Gaps = 20/330 (6%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
+ FNS ++ +C+ G ++ A M F +P + YNS+I G+ + G A L L
Sbjct: 57 SSFNS--VVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVL 114
Query: 198 NEMKEMN---LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
++ + P +++ L + K KM DE+ + + +M L CSP+ +TY+ I F
Sbjct: 115 ESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVM-LKCCSPNVVTYSTWIDTF 173
Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
+G L+ ++ SM + T ++D Y G L+ YK + R L
Sbjct: 174 CKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNV 233
Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDS---- 369
L + + K R +++ + R+ LV+ + RG DS
Sbjct: 234 VTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDG----FFQRG-DSDNAM 288
Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428
+ +M + +R ++T +I+ K ++ ++ + PD+V + +A
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAY 348
Query: 429 RIGFDGTGALEMWKRI---GFLFKTVEINT 455
A+ M+ ++ GF V ++T
Sbjct: 349 FKSGRMKAAVNMYHKLIERGFEPDVVALST 378
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
IEK+ N+ +I LC+EG E R F ++ L P +Y S I G K G
Sbjct: 398 IEKA--NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455
Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
+A M + L Y LI + E M G SPD ++LLI
Sbjct: 456 DAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLI 515
Query: 252 QEF 254
+ +
Sbjct: 516 RAY 518
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
II LC G ++EA ++ME L P + I+ ++++ Y K G+ A+ +++ E
Sbjct: 309 IISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERG 368
Query: 205 LSPQSDTYDGLIQAYGK 221
P +I K
Sbjct: 369 FEPDVVALSTMIDGIAK 385
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 127 DMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184
+M+ + + R+ N II + G + A++ +M ++ + Y II G
Sbjct: 254 EMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGL 313
Query: 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPD 243
GK EA + +M++ +L P + ++ AY K +M ++M K+++ G PD
Sbjct: 314 CGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIE-RGFEPD 372
Query: 244 HITYNLLIQEFACAGLL 260
+ + +I A G L
Sbjct: 373 VVALSTMIDGIAKNGQL 389
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
L +GLM EA + F EM + P +++ +I Y K G A L +M+ L
Sbjct: 483 LASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 135/313 (43%), Gaps = 9/313 (2%)
Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
RS D+ + +E+ + + F II LC +G ++ A+ F+EME +K S+
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
YNS++ G K GK+N+ L L +M + P T++ L+ + K E + K M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
G SP+ ITYN L+ + L M+ + T +++ Y +
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 384
Query: 296 DKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
D K ++ + S+ L + V L + + ++ ++L ++ S +++
Sbjct: 385 DDGMKVFRNI--SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442
Query: 354 RLLSHACLLS--HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
LL C + ++ + +++ +K+ + I+ K + L LP
Sbjct: 443 ILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501
Query: 412 RHVKPDIVTIGIL 424
+ VKP+++T ++
Sbjct: 502 KGVKPNVMTYTVM 514
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 9/291 (3%)
Query: 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
EG + EAV M +P + YNSI++G + G + AL L +M+E N+ T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230
Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
Y +I + + D K M+ G +TYN L++ AG K M+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
++ + T +LD ++ G L + + YK ++ L + Y S
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350
Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANI 388
+++ D + ++V L+ C++ +D V R + + N T +I
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR--VDDGMKVFRNISKRGLVANAVTYSI 408
Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
++ + + K L E+ + V PD++T GIL D G G LE
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD----GLCDNGKLE 455
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC+ G +E+A+ F++++ + + +Y +II G K GK +A + + P
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
TY +I K E ++ L+ M+ DG +P+ TYN LI+ G L +
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567
Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
M + +S++ ++D ++ G LDK
Sbjct: 568 EMKSCGFSADASSIKMVIDMLLS-GELDK 595
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 113/323 (34%), Gaps = 79/323 (24%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
RF +R++Q V D K +E + I N + +I C A ++
Sbjct: 93 RFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKL 152
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+P +N++I G GK +EA++ ++ M E
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE-------------------------- 186
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+GC PD +TYN ++ +G + M + + T I+D+
Sbjct: 187 ---------NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 289 YMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344
G +D +K + + S LVR L +
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC---------------------KA 276
Query: 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
G+ W + LL +++M S ++ NV T N++L ++K +
Sbjct: 277 GK----W-----NDGALL--------LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 405 LLSELPTRHVKPDIVTIGILYDA 427
L E+ TR + P+I+T L D
Sbjct: 320 LYKEMITRGISPNIITYNTLMDG 342
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 121 QIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
++ + +++++++KS+++ II +C+ G +E+A F + +KP++ Y
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512
Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
+I G K G +EA + L +M+E +P TY+ LI+A+
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 52/281 (18%)
Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
++A+ FQEM PSL ++ ++ +FN L F +++ ++ T + +
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129
Query: 216 IQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274
I + + K + K+MKL G PD T+N LI+ GL +EG
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLIK-----GLF--LEG--------- 172
Query: 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-----SRTPLKEDLVRKLAEVYIKNYM 329
+ S V ++D + G + Y ++N T L DL+RK+ E +K +
Sbjct: 173 ---KVSEAVVLVDRMVENGCQPDVVT-YNSIVNGICRSGDTSLALDLLRKMEERNVKADV 228
Query: 330 FSR---LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
F+ +D L D C+ S+ +EME+ ++ +V T
Sbjct: 229 FTYSTIIDSLCRD-------------------GCI---DAAISLFKEMETKGIKSSVVTY 266
Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
N ++ K + +LL ++ +R + P+++T +L D
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 19/312 (6%)
Query: 124 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
+ +D++K ++ I + L + G +EEA+ F+EM G + P + Y ++I
Sbjct: 379 EAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLI 438
Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
G GK ++A + EM +P Y+ L + E LKMM+ G
Sbjct: 439 GGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVK 498
Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
P ++T+N++I+ AG L + E Y+S+ H +++ + G LD
Sbjct: 499 PTYVTHNMVIEGLIDAGELDKAEAFYESL----EHKSRENDASMVKGFCAAGCLDHA--- 551
Query: 302 YKRLLNSRTPLKEDLVRKL-----AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
++R + PL + + L AE K+Y+ S+ DL D + E +L+
Sbjct: 552 FERFIRLEFPLPKSVYFTLFTSLCAE---KDYI-SKAQDLLDRMWKLGVEPEKSMYGKLI 607
Query: 357 SHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
C +++ R + + K+ ++ T I++ Y ++ + K L ++ R VK
Sbjct: 608 GAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVK 667
Query: 416 PDIVTIGILYDA 427
PD+VT +L ++
Sbjct: 668 PDVVTYSVLLNS 679
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%)
Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
+EM+ F +KP + Y +I KIG EA ++M E + P + Y LI K
Sbjct: 750 REMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKM 809
Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
E M M G PD + Y LI G + + K ML K + +++
Sbjct: 810 GYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASL 869
Query: 283 VAI 285
A+
Sbjct: 870 SAV 872
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 116/286 (40%), Gaps = 24/286 (8%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+ G L GL +EA + ME +KP+ +N +I G G+ ++A F ++ +
Sbjct: 472 LAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKS 531
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ G A ++ + ++L+ P + + L A + + +
Sbjct: 532 RENDASMVKGFCAAGCLDHAFE------RFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQ 585
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
M + S ++ A+ + K +F++ L+ + +V L
Sbjct: 586 DLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKK------IVPDLFTYT 639
Query: 325 IKNYMFSRLDD------LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
I + RL++ L +D+ R + ++V +++ LL+ + REME+
Sbjct: 640 IMINTYCRLNEPKQAYALFEDMKRRDVKPDVV------TYSVLLNSDPELDMKREMEAFD 693
Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
V +V I++ Y + D K + L ++ R + PD+VT +L
Sbjct: 694 VIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVL 739
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
K+IG C + +A F+ + + P L Y +I+ Y ++ + +A +MK
Sbjct: 605 KLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRR 664
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
++ P TY L+ + E+DM +M D PD + Y ++I + LK++
Sbjct: 665 DVKPDVVTYSVLLNS------DPELDMKREMEAFD-VIPDVVYYTIMINRYCHLNDLKKV 717
Query: 264 EGTYKSM 270
+K M
Sbjct: 718 YALFKDM 724
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 163 QEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222
+EME F + P + Y +I+ Y + + +MK + P TY L++ +
Sbjct: 687 REMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPER 746
Query: 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282
+ E MK PD Y +LI G L + + M+ + ++
Sbjct: 747 NLSRE-------MKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPY 799
Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
A++ G L + + + R++ S +K D+V
Sbjct: 800 TALIACCCKMGYLKEAKMIFDRMIES--GVKPDVV 832
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 145 IIGMLCEEGL-------MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
+I ++C GL + E VR E GF S++ IG+ ++L+ L
Sbjct: 96 VIRIVCGWGLDKKLDTFLFELVRRGDEGRGF----------SVMDLLKAIGEMEQSLVLL 145
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
+ L++AY M+DE ID+ + G +PD N LI
Sbjct: 146 IRVST-----------ALVKAYANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIA 194
Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310
+G + G + + + + T V ++ A +++EK RLL S T
Sbjct: 195 SGRSDMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEKLLSRLLISET 248
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 36/309 (11%)
Query: 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
Q +VFDM + + E K++ +L + G A + F EM L+P++E+Y ++
Sbjct: 106 QALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTAL 165
Query: 181 IHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
+ Y++ ++A L++MK P TY L++A +D +D K M
Sbjct: 166 LAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERL 225
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKM 298
+P+ +T N+++ + G +ME ML TM IL + N G +D M
Sbjct: 226 ITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMM 285
Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
E +Y++ N + L Y K M+ ++
Sbjct: 286 ESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM------------------------- 320
Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
SV+ M + W +T N I+ A+ + D K++ + ++ + +K D
Sbjct: 321 ---------SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADT 371
Query: 419 VTIGILYDA 427
T L +
Sbjct: 372 KTFCCLING 380
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%)
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
A KP + N I+ + +GK + + + + + P++ T++ LI +YGK +MYD++
Sbjct: 261 ACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKM 320
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
++ M+ TYN +I+ FA G K ME T+ M ++ M + T +++
Sbjct: 321 SSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLING 380
Query: 289 YMNFGMLDKM 298
Y N G+ K+
Sbjct: 381 YANAGLFHKV 390
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
+++ F ++P +N +I Y K +++ + M+++ + TY+ +I+A+
Sbjct: 289 YEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFAD 348
Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281
+++ M+ +G D T+ LI +A AGL ++ + + L + + +T
Sbjct: 349 VGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ--LAAKFEIPENT 406
Query: 282 MV--AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
A++ A L +ME+ Y R+ + + E Y K M ++
Sbjct: 407 AFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKI 460
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 18/229 (7%)
Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
G ++ +K + +L +L L Y ++ + + D + S V+
Sbjct: 138 GQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFT 197
Query: 353 LRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE-L 409
L AC+ + + +DS+ +EM+ + N T NI+L Y ++ F + +LS+ L
Sbjct: 198 YSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDML 257
Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAVYGK 465
+ KPD+ T+ I+ F G ++M + F+ E T +++ YGK
Sbjct: 258 VSTACKPDVWTMNIILSV----FGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGK 313
Query: 466 GHFLRYCEEVYSSLEPYSREKKRW---TYQNLIDLVIK-HNGKNLDGTF 510
R +++ S +E + + W TY N+I+ + KN++ TF
Sbjct: 314 K---RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTF 359
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 73 EHQALNALI-----QRLNKKVSCPLQILQH-DGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
E + N LI +R+ K+S ++ ++ + WT + +I + ++ + F
Sbjct: 300 ETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTF 359
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
D ++ E + + +I GL + + + Q F + + YN++I +K
Sbjct: 360 DQMRS-EGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAK 418
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
E MKE S T++ +++AY K M D+I
Sbjct: 419 ADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKI 460
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 36/305 (11%)
Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
+++++ FD +K IE+ R N ++ LC +A R +M + P++
Sbjct: 202 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
Y++++ + K GK EA EM M++ P TY LI + DE + +M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
GC D ++YN LI F A ++ ++ M + + + T ++ + G +
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381
Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
DK ++F+ ++ D +++ N + L D G+
Sbjct: 382 DKAQEFFSQM---------DFFGISPDIWTYNILLGGLCDNGE----------------- 415
Query: 356 LSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK 415
L A + + +M+ ++ ++ T ++ K + L L + +K
Sbjct: 416 LEKALV--------IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK 467
Query: 416 PDIVT 420
PDIVT
Sbjct: 468 PDIVT 472
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
+ G +++A F +M+ F + P + YN ++ G G+ +AL+ +M++ +
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436
Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
TY +I+ K +E + L G PD +TY ++ GLL +E Y M
Sbjct: 437 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/280 (18%), Positives = 104/280 (37%), Gaps = 34/280 (12%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ C + +AV +M KP + YN+II K + N+A F E++
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P TY L+ + + L M +P+ ITY+ L+ F G + +
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
++ M+ + T ++++ +D+ + + +++ LA+V
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC---------LADVV 331
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
N + + G A R+ G+ + REM + N
Sbjct: 332 SYNTLIN-----GFCKAKRV-------------------EDGM-KLFREMSQRGLVSNTV 366
Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
T N ++ + + D + S++ + PDI T IL
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++G LC+ G +E+A+ F++M+ + + Y ++I G K GK EA +
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
L P TY ++ + E++ MK +G
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/359 (18%), Positives = 144/359 (40%), Gaps = 13/359 (3%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
R K R ++ D++ ++ KSR I +FN +++ + + + + ++ME
Sbjct: 55 RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFN--RLLSAIVKLKKYDVVISLGKKME 112
Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY 225
++ L +N +I+ + + + AL L +M ++ P T L+ + + ++
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172
Query: 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI 285
D + + KM+++ G PD + YN +I + +K + K + T A+
Sbjct: 173 DAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231
Query: 286 LDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345
++ N + ++ + L + ++KN +L +++
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 291
Query: 346 RTELVWCLRLLSHACLLSHRGIDSVVRE---MESAKVRWNVTTANIILLAYLKMKDFKHL 402
++V L++ CL H ID + M S +V + N ++ + K K +
Sbjct: 292 DPDIVTYSSLINGLCL--HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349
Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461
L E+ R + + VT L D A E + ++ F + +I T ++L
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 408
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 11/268 (4%)
Query: 118 RSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
RS ++ + ++ +++E+ R + + +I CE+GL+ A++ M L+P++
Sbjct: 250 RSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVV 309
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
+N++IHG+ + K EA EMK +N++P + TY+ LI Y + ++ + M
Sbjct: 310 TFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDM 369
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
+G D +TYN LI ++ K + + + SST A++
Sbjct: 370 VCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNA 429
Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
D+ + YK ++ S E L + +N F D + + R + R
Sbjct: 430 DRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDF----DGASQVLREMVRRSIPLDSRT 485
Query: 356 LSHAC-LLSHRGIDSVVR----EMESAK 378
+ C L H+G D +V+ EME K
Sbjct: 486 VHQVCNGLKHQGKDQLVKKLLQEMEGKK 513
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N + ++ C G +++ + Q+ME + + YN++I G+ + G + AL
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
N M + L P T++ LI + + E MK +P+ +TYN LI ++
Sbjct: 297 NMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356
Query: 258 G 258
G
Sbjct: 357 G 357
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
L +G ++ A+R ++EM + P+ N ++ GY + GK ++ + L +M+ +
Sbjct: 213 LLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRAT 272
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
+Y+ LI + + + MM G P+ +T+N LI F A L+ +
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332
Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
M + + T +++ Y G + +FY+ ++
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMV 370
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
A F +M+ + P++E N+ + G+ + AL F EM+ +SP T + ++
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMS 246
Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
Y + D+ L+ M+ G ++YN LI GLL
Sbjct: 247 GYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLL 289
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 45/336 (13%)
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
DM++ KS + FN +I +LC+EG +++A ME F +KP++ YN+++ G+S
Sbjct: 215 DMYRMEIKSNVYTFNI--MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSL 272
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
G+ A L ++EMK P TY+ ++ E+ L+ MK G PD ++
Sbjct: 273 RGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEV---LREMKEIGLVPDSVS 329
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKR-------------------------------- 274
YN+LI+ + G L+ M Y+ + K+
Sbjct: 330 YNILIRGCSNNGDLE-MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREI 388
Query: 275 ----MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330
+ L S T +++ Y G K + ++ + L V +
Sbjct: 389 REKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKT 448
Query: 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANI 388
D+L + + + + +LV L+ C + + R S+++EM+ + + T N
Sbjct: 449 READELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAF-SLLKEMDMMSINPDDVTYNC 507
Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
++ F+ R L+ E+ R +KPD ++ L
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTL 543
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
+F +I +LC + EA F+++ G +KP L + N+++ G+ IG + A L
Sbjct: 431 TQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLL 490
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
EM M+++P TY+ L++ ++E + MK G PDHI+YN LI ++
Sbjct: 491 KEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 550
Query: 258 G 258
G
Sbjct: 551 G 551
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 124 QVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
+ F + K ++ IN + ++ LC EG EEA EM+ +KP YN++I
Sbjct: 485 RAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLI 544
Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
GYSK G A + +EM + +P TY+ L++ K + + + L+ MK +G
Sbjct: 545 SGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIV 604
Query: 242 PDHITYNLLIQEFA 255
P+ ++ +I+ +
Sbjct: 605 PNDSSFCSVIEAMS 618
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 8/270 (2%)
Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
C+ +++EA+ F M+ P E N I+ S++ + A +F +M M +
Sbjct: 166 CQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225
Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
T++ +I K + L +M++ G P +TYN L+Q F+ G ++
Sbjct: 226 YTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISE 285
Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNY 328
M +K T IL N G ++ + K + L + L+R +
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEM 345
Query: 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR--GIDSVVREMESAKVRWNVTTA 386
F+ D++ + G + L H + ++ + ++RE+ + + T
Sbjct: 346 AFAYRDEM-----VKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 400
Query: 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKP 416
NI++ Y + D K L E+ T ++P
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTDGIQP 430
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 3/302 (0%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ LC G EA+ +M + +P+ Y +++ K G+ A+ L +M+E N
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ + Y +I K+ D M++ G + + ITYN+LI F AG
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
+ M+ ++++ T ++D+++ G L + E+ +K +++ L + +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
K + + + D + S+ G + +L + ++R D + R+M V +
Sbjct: 379 CKENHLDKANQMVDLMVSK-GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437
Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
T N ++ + ++ + L E+ +R V P+IVT IL D + ALE+++
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 497
Query: 443 RI 444
+I
Sbjct: 498 KI 499
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 13/315 (4%)
Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
+S Q ++ + +E+ I + II LC+ G ++ A F EME + ++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
YN +I G+ G++++ L +M + ++P T+ LI ++ K E + K M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
G +PD ITY LI F L + M++K T +++ Y +
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419
Query: 296 DK-MEKFYK---RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351
D +E F K R + + T L++ E+ N +L ++ SR +V
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA----KELFQEMVSRKVPPNIVT 475
Query: 352 CLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
LL C S + ++ + ++E +K+ ++ NII+ L L
Sbjct: 476 YKILLDGLCDNGESEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534
Query: 410 PTRHVKPDIVTIGIL 424
P + VKP + T I+
Sbjct: 535 PLKGVKPGVKTYNIM 549
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 40/327 (12%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I +EG + EA +EM + P Y S+I G+ K ++A ++ M
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P T++ LI Y K D+ + M L G D +TYN LIQ F G L +
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
++ M+++++ T +LD + G +K + ++++ S+ L ++
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL---------DIG 509
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
I N + + + AS++ + W L C L +G V+ V
Sbjct: 510 IYNIIIHGMCN-----ASKV---DDAWDL-----FCSLPLKG------------VKPGVK 544
Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA---LEMW 441
T NI++ K +L ++ PD T IL A D T + +E
Sbjct: 545 TYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604
Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHF 468
KR GF +V+ +T +V+ + G
Sbjct: 605 KRCGF---SVDASTIKMVIDMLSDGRL 628
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 131 NIEKSRINEFNSQKI----------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180
N+ K E S+K+ + LC+ G E+A+ F+++E ++ + IYN I
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514
Query: 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240
IHG K ++A + + P TY+ +I K E ++ + M+ DG
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574
Query: 241 SPDHITYNLLIQ 252
+PD TYN+LI+
Sbjct: 575 APDGWTYNILIR 586
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 40/321 (12%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
R ++++Q V + K +E I N + +I C + A A ++
Sbjct: 93 RLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKL 152
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+P+ ++++I+G G+ +EAL ++ M EM P T + L+ E
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+ + M GC P+ +TY ++ +G + M + + L + I+D
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG--DDLASRIGR 346
G LD + + ++ + N + + G DD A
Sbjct: 273 LCKHGSLDNAFNLFNEM---------EMKGITTNIITYNILIGGFCNAGRWDDGA----- 318
Query: 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
++R+M K+ NV T ++++ +++K + L
Sbjct: 319 ----------------------KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356
Query: 407 SELPTRHVKPDIVTIGILYDA 427
E+ R + PD +T L D
Sbjct: 357 KEMIHRGIAPDTITYTSLIDG 377
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 124 QVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
+ ++++ IEKS+ I +N II +C +++A F + +KP ++ YN
Sbjct: 491 KALEIFEKIEKSKMELDIGIYNI--IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
+I G K G +EA L +M+E +P TY+ LI+A+
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 588
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 157/378 (41%), Gaps = 32/378 (8%)
Query: 67 LVESYHEHQ--ALNALIQRL--NKKVSCPLQILQ---HDGDWTKDHFWAVIRFLKNSSRS 119
+VE H+ LNAL+ L N KVS + ++ G + + + LK +S
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV--LKVMCKS 225
Query: 120 RQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
Q ++ + +E+ +I + II LC++G ++ A F EME K + IY
Sbjct: 226 GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIY 285
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
++I G+ G++++ L +M + ++P + LI + K E + K M
Sbjct: 286 TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
G SPD +TY LI F L + M++K T +++ Y ++D
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD 405
Query: 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG---------DDLASRIGRTE 348
+ ++++ L +A+ N + +LG ++ SR R +
Sbjct: 406 GLELFRKM---------SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456
Query: 349 LVWCLRLLSHAC--LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406
+V LL C + ++ + ++E +K+ ++ NII+ L
Sbjct: 457 IVSYKILLDGLCDNGEPEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515
Query: 407 SELPTRHVKPDIVTIGIL 424
LP + VKPD+ T I+
Sbjct: 516 CSLPLKGVKPDVKTYNIM 533
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC EG + EA+ M KP+L N++++G GK ++A+L ++ M E
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207
Query: 205 LSPQSDTYDGLIQAYGKY-----------KMYDE------------ID-MC--------- 231
P TY +++ K KM + ID +C
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267
Query: 232 --LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
M++ G D I Y LI+ F AG + M+ +++ A++D +
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327
Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
+ G L + E+ +K ++ L + + K + + + D + S+ +
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387
Query: 350 VWCLRLLSHACL--LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
L++ C L G++ + R+M V + T N ++ + ++ + + L
Sbjct: 388 RTFNILINGYCKANLIDDGLE-LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
E+ +R V+PDIV+ IL D + ALE++++I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 25/312 (8%)
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
DM K + F++ +I +EG + EA +EM + P Y S+I G+ K
Sbjct: 307 DMIKRKITPDVVAFSA--LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
+ ++A L+ M P T++ LI Y K + D+ + M L G D +T
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
YN LIQ F G L+ + ++ M+++R+ + +LD + G +K + ++++
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484
Query: 307 NSRTPLKEDLVRKLAEVYIKNYMF------SRLDDLGDDLASRI--GRTELVWCLRLLSH 358
S+ L ++ I N + S++DD D S G V ++
Sbjct: 485 KSKMEL---------DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535
Query: 359 ACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
L +G D + R+ME N T NI++ A+L D L+ E+
Sbjct: 536 G--LCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF 593
Query: 415 KPDIVTIGILYD 426
D T+ ++ D
Sbjct: 594 SVDASTVKMVVD 605
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/320 (18%), Positives = 118/320 (36%), Gaps = 38/320 (11%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
R +R++Q V D+ K +E I N + +I C + A A ++
Sbjct: 77 RLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL 136
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+P ++++I+G G+ +EAL ++ M EM P T + L+ +
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+ + M G P+ +TY +++ +G + M +++ L + I+D
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS-RLDDLGDDLASRIGRT 347
G LD + + K D++ + I+ + ++ R DD
Sbjct: 257 LCKDGSLDNAFNLFNEM--EIKGFKADII--IYTTLIRGFCYAGRWDDGA---------- 302
Query: 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
++R+M K+ +V + ++ ++K + L
Sbjct: 303 ---------------------KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 408 ELPTRHVKPDIVTIGILYDA 427
E+ R + PD VT L D
Sbjct: 342 EMIQRGISPDTVTYTSLIDG 361
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC+EG ++ A EM L+P++ YNSI++G K G EA+ + E +
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
L+ + TY L+ AY K D+ LK M G P +T+N+L+ F G+L+ E
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAY 289
ML K + ++T +++ Y
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQY 606
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)
Query: 128 MWKNIE-----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
+WK IE + N + IIG+LC + EA AF EM + P +Y ++I
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359
Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
G+ K G A F EM +++P TY +I + + E M G P
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 419
Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
D +T+ LI + AG +K + M+ T ++D G LD
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS----- 474
Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
+L+ ++ ++ ++ +F+ + + + L E V
Sbjct: 475 ----------ANELLHEMWKIGLQPNIFT-YNSIVNGLCKSGNIEEAV------------ 511
Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
+V E E+A + + T ++ AY K + + +L E+ + ++P IVT
Sbjct: 512 ------KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565
Query: 423 ILYDARRIGFDGTGALE 439
+L + GF G LE
Sbjct: 566 VLMN----GFCLHGMLE 578
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
+MWK + I +NS I+ LC+ G +EEAV+ E E L Y +++ Y K
Sbjct: 481 EMWKIGLQPNIFTYNS--IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
G+ ++A L EM L P T++ L+ + + M ++ + L M G +P+ T
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTK 273
+N L++++ LK YK M ++
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 1/289 (0%)
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
++I C+ G M++A R M P++ Y ++I G K G + A L+EM ++
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
L P TY+ ++ K +E + + G + D +TY L+ + +G + +
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
+ K ML K + T +++ + GML+ EK +L L +
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Query: 324 YIKNYMFSRLDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
Y + D+ SR +G + + H + + + +EM+ +
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431
V+T ++++ +LK K F R + ++ + D D + G
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 714
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 34/273 (12%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
II C+ G M EA + F EM L+P + +I+GY K G +A N M +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
SP TY LI K D + L M G P+ TYN ++ +G ++
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
++ + T ++DAY G +DK ++ K +L L+ +V V
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVT--FNVL 567
Query: 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT 384
+ + + + G+ L L W L +GI N T
Sbjct: 568 MNGFCLHGMLEDGEKL--------LNWML----------AKGIAP------------NAT 597
Query: 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417
T N ++ Y + K + ++ +R V PD
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 630
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 125/315 (39%), Gaps = 31/315 (9%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA--LLFLNEMKEMNLSPQSDTYDGL 215
A+ F+E + ++ YN +IH ++G+ EA LL L E+K +P +Y +
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK--GYTPDVISYSTV 287
Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
+ Y ++ D++ +++MK G P+ Y +I L E + M+ + +
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNYMFSRL 333
+ ++D + G + KF+ ++SR TP +V + S
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITP----------DVLTYTAIISGF 396
Query: 334 DDLGD---------DLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNV 383
+GD ++ + + V L++ C H + V M A NV
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456
Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443
T ++ K D LL E+ ++P+I T Y++ G +G +E +
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT----YNSIVNGLCKSGNIEEAVK 512
Query: 444 IGFLFKTVEINTDPL 458
+ F+ +N D +
Sbjct: 513 LVGEFEAAGLNADTV 527
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FNS ++ C ++ A +++M + P + Y +++ G+ K EA E
Sbjct: 599 FNS--LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
MK S TY LI+ + K K + E M+ +G + D ++
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
C+ M+EA FQEM+G S+ Y+ +I G+ K KF EA ++M+ L+
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701
Query: 210 DTYDGLIQAYGKYKMYDEI 228
+ +D K K D I
Sbjct: 702 EIFDFFSDTKYKGKRPDTI 720
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 18/208 (8%)
Query: 112 FLKNSSRSRQIPQVFDMWK-----NIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
FL SS+ ++ +F + I+ SR +N+ +I LC+ G+ ++A +ME
Sbjct: 651 FLDTSSKHKRADAIFKTHETLLSYGIKLSR-QVYNT--LIATLCKLGMTKKAAMVMGDME 707
Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
P +NS++HGY +AL + M E +SP TY+ +I+ +
Sbjct: 708 ARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIK 767
Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
E+D L MK G PD TYN LI A G +K Y M+ + ++ST ++
Sbjct: 768 EVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLI 827
Query: 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
+ N G ++L +R LKE
Sbjct: 828 SEFANVG----------KMLQARELLKE 845
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 62/319 (19%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
I+ +I LCE GL +EA + EM + P YN++I G+ K+G F A
Sbjct: 161 IDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKAL 220
Query: 197 LNEMKEMNL----------------------------SPQSDTYDGLIQAYGKYKMYDEI 228
++E+ E+NL P T+ +I K E
Sbjct: 221 VDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEG 280
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+ L+ M+ P+H+TY L+ A + + Y M+ + + + ++D
Sbjct: 281 GLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 340
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
G L + EK +K LL ED ++ V + L GD
Sbjct: 341 LFKAGDLREAEKTFKMLL-------ED--NQVPNVVTYTALVDGLCKAGD---------- 381
Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
LS A + ++ +M V NV T + ++ Y+K + LL +
Sbjct: 382 -------LSSA--------EFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRK 426
Query: 409 LPTRHVKPDIVTIGILYDA 427
+ ++V P+ T G + D
Sbjct: 427 MEDQNVVPNGFTYGTVIDG 445
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 120 RQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
R+ + F M +E +++ N ++ LC+ G + A +M ++ P++ Y+
Sbjct: 348 REAEKTFKML--LEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 405
Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY----DGLIQAYGKYKMYDEIDMCLKM 234
S+I+GY K G EA+ L +M++ N+ P TY DGL +A GK +M E+ K
Sbjct: 406 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA-GKEEMAIELS---KE 461
Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
M+L G ++ + L+ G +K ++G K M++K + L +++D + G
Sbjct: 462 MRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 520
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 49/322 (15%)
Query: 108 AVIRFLKNSSRSRQIPQ-VFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQE 164
A + NS R + + + +W ++ I + ++GMLCE G MEEA+ +
Sbjct: 576 ATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQ 635
Query: 165 MEGFALKPSLEIYNSIIHGYSK------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218
M + P+L Y + SK I K +E LL + LS Q Y+ LI
Sbjct: 636 MMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYG----IKLSRQ--VYNTLIAT 689
Query: 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278
K M + M + M+ G PD +T+N L+ + +++ TY M+ +
Sbjct: 690 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 749
Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338
+T I+ + G++ +++K+ + SR +D + N + S +G+
Sbjct: 750 VATYNTIIRGLSDAGLIKEVDKWLSE-MKSRGMRPDD--------FTYNALISGQAKIGN 800
Query: 339 DLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398
+G ++ EM + + +T N+++ + +
Sbjct: 801 -------------------------MKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGK 835
Query: 399 FKHLRVLLSELPTRHVKPDIVT 420
R LL E+ R V P+ T
Sbjct: 836 MLQARELLKEMGKRGVSPNTST 857
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 57/307 (18%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
L + G + EA + F+ + P++ Y +++ G K G + A + +M E ++ P
Sbjct: 341 LFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPN 400
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
TY +I Y K M +E L+ M+ P+ TY +I GL K +
Sbjct: 401 VVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVID-----GLFKAGKEEMA 455
Query: 269 SMLTKRMHLRS-STMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV 323
L+K M L ILDA +N G + +++ K +++ L + L +V
Sbjct: 456 IELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDV 515
Query: 324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV 383
+ K GD+ A+ + EM+ + W+V
Sbjct: 516 FFKG---------GDEEAAL-------------------------AWAEEMQERGMPWDV 541
Query: 384 TTANIILLAYLKMKD------FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGA 437
+ N+++ LK +K +R + ++PDI T I+ +++R D G
Sbjct: 542 VSYNVLISGMLKFGKVGADWAYKGMR-------EKGIEPDIATFNIMMNSQRKQGDSEGI 594
Query: 438 LEMWKRI 444
L++W ++
Sbjct: 595 LKLWDKM 601
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
II L + GL++E + EM+ ++P YN++I G +KIG ++ EM
Sbjct: 756 IIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADG 815
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA--C------ 256
L P++ TY+ LI + + LK M G SP+ TY +I C
Sbjct: 816 LVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVE 875
Query: 257 ----AGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYK 303
A L +G K M+ ++ ++ + T+ I A+ GM E+F K
Sbjct: 876 WNKKAMYLAEAKGLLKEMVEEKGYIPCNQTIYWISAAFSKPGMKVDAERFLK 927
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 45/276 (16%)
Query: 153 GLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211
GL+ + V + +M + P + N +IH + K+G+ + A+ L + +S + T
Sbjct: 109 GLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLL---RNRVISIDTVT 165
Query: 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
Y+ +I ++ + DE L M G PD ++YN LI F G R K+++
Sbjct: 166 YNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRA----KALV 221
Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331
+ L T +L +Y N L +E+ Y+ ++ S D+V
Sbjct: 222 DEISELNLITHTILLSSYYN---LHAIEEAYRDMVMS--GFDPDVV-------------- 262
Query: 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
+S I R L ++L LL REME V N T ++
Sbjct: 263 -------TFSSIINR--LCKGGKVLEGGLLL---------REMEEMSVYPNHVTYTTLVD 304
Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+ K ++H L S++ R + D+V +L D
Sbjct: 305 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDG 340
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSR---INEFNSQKIIGMLCEEGLMEEAVRAFQE 164
+IR L ++ +++ D W + KSR ++F +I + G M+ ++ + E
Sbjct: 755 TIIRGLSDAGLIKEV----DKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCE 810
Query: 165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
M L P YN +I ++ +GK +A L EM + +SP + TY +I K
Sbjct: 811 MIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCT 870
Query: 225 YDEIDMCLKMMKL 237
+ +++ K M L
Sbjct: 871 HPDVEWNKKAMYL 883
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 17/264 (6%)
Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-------GKYKMYDEID 229
YN +I G K GK + M+E + P T++ ++ + G K++D++
Sbjct: 544 YNVLISGMLKFGKVGADWAY-KGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMK 602
Query: 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
C G P ++ N+++ G ++ M+ +H +T LD
Sbjct: 603 SC-------GIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTS 655
Query: 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349
D + K ++ LL+ L + L K M + + D+ +R +
Sbjct: 656 SKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDT 715
Query: 350 VWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
V L+ + SH R S M A + NV T N I+ K + LSE
Sbjct: 716 VTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSE 775
Query: 409 LPTRHVKPDIVTIGILYDAR-RIG 431
+ +R ++PD T L + +IG
Sbjct: 776 MKSRGMRPDDFTYNALISGQAKIG 799
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 41/287 (14%)
Query: 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195
R + ++ LC G +A R ++M + P++ + ++I + K GKF+EA+
Sbjct: 206 RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMK 265
Query: 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255
EM + P TY+ LI + DE L +M GC PD +TYN LI F
Sbjct: 266 LYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325
Query: 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315
+ + ++ M + + + T I+ Y G D ++ + R ++SR
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR-MDSRPN---- 380
Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV--RE 373
I+ Y +L + ++ R ++V
Sbjct: 381 ---------IRTY-------------------------SILLYGLCMNWRVEKALVLFEN 406
Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
M+ +++ ++TT NI++ K+ + + L L + +KPD+V+
Sbjct: 407 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 137/330 (41%), Gaps = 32/330 (9%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
+ L ++S+ V ++ ++E I ++ +I LC A+ +M F
Sbjct: 74 KVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKF 133
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+P + +S+I+G+ + + +A+ +++M+EM P Y+ +I K + ++
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
M+ DG D +TYN L+ C+G + M+ + + T A++D
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--------MFSRLDD---LG 337
++ G + K Y E++ R+ + + Y M R+D+ +
Sbjct: 254 FVKEGKFSEAMKLY-----------EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDS---VVREMESAKVRWNVTTANIILLAYL 394
D + ++ ++V L++ C + +D + REM + + T N I+ Y
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFC--KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360
Query: 395 KMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
+ + + S + +R P+I T IL
Sbjct: 361 QAGRPDAAQEIFSRMDSR---PNIRTYSIL 387
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC +E+A+ F+ M+ ++ + YN +IHG KIG +A + L P
Sbjct: 391 LCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPD 450
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
+Y +I + + + +D+ D+ + M+ DG P
Sbjct: 451 VVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 121 QIPQVFDMWKNIEKSRIN-EFNSQKII--GMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
++ + +++N++KS I + + I+ GM C+ G +E+A F+ + LKP + Y
Sbjct: 396 RVEKALVLFENMQKSEIELDITTYNIVIHGM-CKIGNVEDAWDLFRSLSCKGLKPDVVSY 454
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
++I G+ + +++++ L +M+E L P
Sbjct: 455 TTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 32/143 (22%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK--------------- 189
+I C+ ++E + F+EM L YN+II GY + G+
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 379
Query: 190 -----------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
+AL+ M++ + TY+ +I K ++
Sbjct: 380 NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLF 439
Query: 233 KMMKLDGCSPDHITYNLLIQEFA 255
+ + G PD ++Y +I F
Sbjct: 440 RSLSCKGLKPDVVSYTTMISGFC 462
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 10/263 (3%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I L +EG EEA+ +++M KP++ +Y+ ++ G + GK NEA LN M
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P + TY L++ + K + +E K M GCS + Y++LI G +K
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAM 487
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE-DLV--RKLA 321
+ MLT + + +I+ G +D K Y +L P + D+V L
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547
Query: 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL------SHACLLSHRGIDS-VVREM 374
+ SR DL + + R +++ C L S++C ++ VVR +
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLL 607
Query: 375 ESAKVRWNVTTANIILLAYLKMK 397
+ +V T ++L YL K
Sbjct: 608 KRQRVSGACTIVEVMLGKYLAPK 630
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC+ ++ A+ F+ M P Y +++ G K + +EA+L L+EM+
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
SP Y+ LI K + + M L GC P+ +TYN LI G L +
Sbjct: 253 CSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAV 312
Query: 265 GTYKSMLTKR 274
+ M++ +
Sbjct: 313 SLLERMVSSK 322
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC+E ++EAV EM+ PS IYN +I G K G ++ M P
Sbjct: 232 LCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPN 291
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
TY+ LI D+ L+ M C P+ +TY LI GL+K+ T
Sbjct: 292 EVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN-----GLVKQRRATDA 346
Query: 269 SMLTKRMHLRS 279
L M R
Sbjct: 347 VRLLSSMEERG 357
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 6/180 (3%)
Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG----FALKPSLEIYNSIIHGYSKIGK 189
K + FNS ++ ++ EGL + + + + P+ +N +I K+
Sbjct: 145 KRSVKSFNS--VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRF 202
Query: 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249
+ A+ M E P TY L+ K + DE + L M+ +GCSP + YN+
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262
Query: 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
LI G L R+ +M K T ++ G LDK +R+++S+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 114/302 (37%), Gaps = 34/302 (11%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
NE +I LC +G +++AV + M P+ Y ++I+G K + +A+ L
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL 350
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+ M+E Y LI K +E + M GC P+ + Y++L+
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
G + M+ + T +++ + G+ ++ + +K + +T +
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM--DKTGCSRN-- 466
Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM--- 374
+ +S L D G R+ +VW ++L+ S+++ +
Sbjct: 467 ---------KFCYSVLID-GLCGVGRVKEAMMVWS-KMLTIGIKPDTVAYSSIIKGLCGI 515
Query: 375 ----------------ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
E K + +V T NI+L KD LL+ + R PD+
Sbjct: 516 GSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDV 575
Query: 419 VT 420
+T
Sbjct: 576 IT 577
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335
L ST+ +++++Y N G D +EK R+ L +R ++ + V + Y + L D
Sbjct: 75 LGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFI-----VVFRAYGKAHLPD 129
Query: 336 LGDDLASRIGRTELVWCLRLLS--HACL-------LSHRGI---DSVVREMESAKVRWNV 383
DL R+ + C R + ++ L L HRG+ D VV + + N
Sbjct: 130 KAVDLFHRM--VDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187
Query: 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+ N+++ A K++ + +P R PD T L D
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDG 231
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 138/342 (40%), Gaps = 44/342 (12%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
R L S+ ++ V +W+ ++ I N ++ C + A+ +M
Sbjct: 86 RLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKL 145
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+PS+ + S+++G+ + + +AL ++M M P Y+ +I K K D
Sbjct: 146 GHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNA 205
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
L M+ DG PD +TYN LI +G M + ++ T A++DA
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
+ G + + E+FY+ ++ R L D+V +Y M+SRLD+ +
Sbjct: 266 CVKEGRVSEAEEFYEEMI--RRSLDPDIVTYSLLIY-GLCMYSRLDEAEEMFGF------ 316
Query: 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408
++S C +V T +I++ Y K K +H L E
Sbjct: 317 ------MVSKGCFP-------------------DVVTYSILINGYCKSKKVEHGMKLFCE 351
Query: 409 LPTRHVKPDIVTIGILYDARRIGFDGTGAL----EMWKRIGF 446
+ R V + VT IL G+ G L E+++R+ F
Sbjct: 352 MSQRGVVRNTVTYTILIQ----GYCRAGKLNVAEEIFRRMVF 389
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I C+ +E ++ F EM + + Y +I GY + GK N A M
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
+ P TY+ L+ ++ + L M+ +G D +TYN++I+ AG
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAG 445
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC+ G +E+A+ +M+ + + YN II G K G+ +A + L P
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH 244
TY ++ K + E D + MK DG P+
Sbjct: 466 IWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
R+I V D ++ + + +EF ++ EGL+ EA F E++ +P YN+
Sbjct: 263 RKILGVLDEMRS-KGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
++ + K G + EAL L EM+E + S TY+ L+ AY + E ++MM G
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 240 CSPDHITYNLLIQEFACAG 258
P+ ITY +I + AG
Sbjct: 382 VMPNAITYTTVIDAYGKAG 400
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------------------- 189
G E+A+ F+ M+ P+L YN I+ + K+G+
Sbjct: 224 GKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFT 283
Query: 190 -------------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
EA F E+K P + TY+ L+Q +GK +Y E LK M+
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343
Query: 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
+ C D +TYN L+ + AG K G + M K + + T ++DAY G D
Sbjct: 344 ENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKED 403
Query: 297 KMEKFYKRLLNS----RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352
+ K + + + T ++ L + N M L D+ + S W
Sbjct: 404 EALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCS---PNRATWN 460
Query: 353 LRLLSHACLLSHRGIDS----VVREMESAKVRWNVTTANIILLAY 393
L L ++G+D V REM+S + T N ++ AY
Sbjct: 461 TML----ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 7/280 (2%)
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
+++ G +EA + M + P+ Y ++I Y K GK +EAL MKE
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263
P + TY+ ++ GK +E+ L MK +GCSP+ T+N ++ G+ K +
Sbjct: 416 GCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475
Query: 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL----LNSRTPLKEDLVRK 319
++ M + T ++ AY G K Y + N+ L+
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
LA K S + + D + TE + L L +A ++ GI+ + ++ ++
Sbjct: 536 LAR---KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQI 592
Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419
+ +LLA K + + KPD+V
Sbjct: 593 FPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMV 632
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ M G +A + +E LKP L YN++I G+ + G EA+ L+EM E
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
+ P TY+ + Y M+ EI+ ++ M + C P+ +T+ +++ + AG
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 24/325 (7%)
Query: 108 AVIRFLKNSSRSRQ-IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
AV+ L SRS + I + DM N N ++ + +G+ + R F+EM+
Sbjct: 426 AVLSLLGKKSRSNEMIKMLCDMKSN--GCSPNRATWNTMLALCGNKGMDKFVNRVFREMK 483
Query: 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
+P + +N++I Y + G +A EM + TY+ L+ A + +
Sbjct: 484 SCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 543
Query: 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYK--SMLTKRMHLRSST 281
+ + MK G P +Y+L++Q +A G ++R+E K + M LR+
Sbjct: 544 SGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRT-- 601
Query: 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDD 339
+L A L E+ + L + K D+V + ++ +N M+ + + + +
Sbjct: 602 ---LLLANFKCRALAGSERAFT--LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILES 656
Query: 340 LASRIGRTELVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLK 395
+ +LV L+ + RG + +++ +E ++++ ++ + N ++ + +
Sbjct: 657 IREDGLSPDLVTYNSLMD---MYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCR 713
Query: 396 MKDFKHLRVLLSELPTRHVKPDIVT 420
+ +LSE+ R ++P I T
Sbjct: 714 RGLMQEAVRMLSEMTERGIRPCIFT 738
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMM 235
Y +I+H YS+ GK+ +A+ MKEM SP TY+ ++ +GK + + +I L M
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
+ G D T + ++ A GLL+ + + + + + T A+L + G+
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVY 332
Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
+ K + + P +L Y++
Sbjct: 333 TEALSVLKEMEENSCPADSVTYNELVAAYVR 363
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 124 QVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
Q+F W + + F + + G + RAF + KP + I+NS++
Sbjct: 591 QIFPSWMLLRTLLLANFKCRALAG----------SERAFTLFKKHGYKPDMVIFNSMLSI 640
Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
+++ +++A L ++E LSP TY+ L+ Y + + + LK ++ PD
Sbjct: 641 FTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPD 700
Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
++YN +I+ F GL++ M + + T + Y GM ++E
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIE 756
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N +I + G +EA++ F M+ P+ YN+++ K + NE + L
Sbjct: 385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+MK SP T++ ++ G M ++ + MK G PD T+N LI +
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
G Y M + +T A+L+A G
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 540
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 2/182 (1%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FNS ++ + + ++A + + L P L YNS++ Y + G+ +A L
Sbjct: 634 FNS--MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
+++ L P +Y+ +I+ + + + E L M G P TYN + + G+
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
+E + M T ++D Y G + F ++ + +++
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQR 811
Query: 320 LA 321
LA
Sbjct: 812 LA 813
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 104/267 (38%), Gaps = 41/267 (15%)
Query: 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM 165
F +++ L R+ +FD + + + +I C+ +++EA R F++M
Sbjct: 176 FNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDM 235
Query: 166 EGFALKPSLEIYNSIIHGYSKIGK------------------------------------ 189
E + P + YN+II G + GK
Sbjct: 236 ELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQ 295
Query: 190 -FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL--KMMKLDGCSPDHIT 246
+EA+L ++M L P + TY+ LI+ + YDEI L +PD T
Sbjct: 296 EIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACT 355
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
+N+LI+ AG L ++ ML ++H S++ ++ D+ E + L
Sbjct: 356 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELF 415
Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRL 333
L +D + LA Y N MF L
Sbjct: 416 EKEVLLGKDECKPLAAAY--NPMFEYL 440
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FNS +I GL +E+V+ FQ M+ + PS+ +NS++ K G+ A +E
Sbjct: 141 FNS--LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198
Query: 200 MKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
M+ ++P S T++ LI + K M DE K M+L C+PD +TYN +I AG
Sbjct: 199 MRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAG 258
Query: 259 LLKRMEGTYKSMLTK 273
+K ML K
Sbjct: 259 KVKIAHNVLSGMLKK 273
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK-IIGMLCEEGLMEEAVRAFQEMEG 167
+ +L + +++Q +VF + + K + + S K +I C EG + A M
Sbjct: 436 MFEYLCANGKTKQAEKVF---RQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLR 492
Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS---PQSDTYDGLIQAYGKYKM 224
P LE Y +I G KIG EALL + ++ M S P + T+ ++ K K
Sbjct: 493 REFVPDLETYELLIDGLLKIG---EALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKF 549
Query: 225 YDEIDMCLKMMKLD 238
+E CL + L+
Sbjct: 550 ANE-SFCLVTLMLE 562
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 22/248 (8%)
Query: 65 TLLVESYHEHQALN---ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQ 121
T L+ESY N A+ +R+ P I + +++ + ++
Sbjct: 178 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAI----------TYQIILKTFVEGDKFKE 227
Query: 122 IPQVFDMWKNIEKSRINEFNSQKI----IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
+VF+ + +KS + QK+ I M + G E+A + F M G + S Y
Sbjct: 228 AEEVFETLLDEKKSPLKP--DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTY 285
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
NS++ + + E ++M+ ++ P +Y LI+AYG+ + +E + M
Sbjct: 286 NSLMSFETS---YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
G P H YN+L+ FA +G++++ + +KSM R+ + +L AY+N ++
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402
Query: 298 MEKFYKRL 305
EKF+KR+
Sbjct: 403 AEKFFKRI 410
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 25/313 (7%)
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
+I Y K+G FN A L+ + +M +P +Y L+++YG+ + + + M+ G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYM--NFGMLD 296
P ITY ++++ F K E ++++L K+ L+ + + YM G +
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264
Query: 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356
K K + ++ P L S++ D ++ R+++ ++
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD-------QMQRSDI--QPDVV 315
Query: 357 SHACLLSHRGID-------SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409
S+A L+ G SV EM A VR NI+L A+ + + + +
Sbjct: 316 SYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 375
Query: 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI---GFLFKTVEINTDPLVLAVYGKG 466
+ PD+ + + A D GA + +KRI GF V T ++ Y K
Sbjct: 376 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT---LIKGYAKA 432
Query: 467 HFLRYCEEVYSSL 479
+ + EVY +
Sbjct: 433 NDVEKMMEVYEKM 445
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
EEA+ F+EM ++P+ + YN ++ ++ G +A M+ + P +Y +
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 390
Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
+ AY + + K +K+DG P+ +TY LI+ +A A +++M Y+ M +
Sbjct: 391 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 450
Query: 276 HLRSSTMVAILDAY---MNFG 293
+ + I+DA NFG
Sbjct: 451 KANQTILTTIMDASGRCKNFG 471
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G++E+A F+ M + P L Y +++ Y A F +K P TY
Sbjct: 363 GMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTY 422
Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI------QEFACA-GLLKRME 264
LI+ Y K +++ + M+L G + ++ + F A G K ME
Sbjct: 423 GTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 481
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
ME A + F+ ++ +P++ Y ++I GY+K + + +M+ +
Sbjct: 400 MEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTT 459
Query: 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251
++ A G+ K + K M+ G PD N+L+
Sbjct: 460 IMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLL 496
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 163/380 (42%), Gaps = 33/380 (8%)
Query: 58 YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSS 117
Y S+ TLL++ + + I L IL+ D +K + I + +
Sbjct: 141 YPSSDSLTLLLDHLVKTKQFRVTINVF-------LNILESDFRPSKFMYGKAI---QAAV 190
Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
+ + + +++ ++ RI + F +I LC+ M +A + F EM L PSL
Sbjct: 191 KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
YN++I GY K G ++ MK ++ P T++ L++ K M ++ + LK M
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
K G PD T+++L ++ + G Y++ + + + + T +L+A G +
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370
Query: 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355
+K E+ R + E + + + Y + GD + +R+ + E + +
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRK---------GDLVGARM-KIEAMEKQGM 420
Query: 356 ----LSHACLLSH-------RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
L++ CL+ + V +M+ V +V T NI++ Y + +F
Sbjct: 421 KPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFD 480
Query: 405 LLSELPTRHVKPDIVTIGIL 424
+L E+ P++V+ G L
Sbjct: 481 ILKEMEDNGTMPNVVSYGTL 500
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 130/314 (41%), Gaps = 36/314 (11%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I CE G ME A + +M+ + PS+E YN +I GY + +F++ L EM++
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P +Y LI K E + + M+ G SP YN+LI G ++
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAF 549
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL-------- 316
K ML K + L T ++D G L + E + SR LK D+
Sbjct: 550 RFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI--SRKGLKPDVFTYNSLIS 607
Query: 317 -------VRKLAEVY-----------IKNY--MFSRLDDLGDDLASRI-GRTELVWCLRL 355
V++ +Y +K Y + S G +L R+ G L L +
Sbjct: 608 GYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLV 667
Query: 356 LSHA--CLLSHRGID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410
+ C H ++ ++ ++M + + TT N ++L LK+ +R L+ E+
Sbjct: 668 YNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMN 727
Query: 411 TRHVKPDIVTIGIL 424
R ++P+ T I+
Sbjct: 728 AREMEPEADTYNII 741
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
NE +I C +G + A + ME +KP YN +I + ++G+ A +
Sbjct: 388 NEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEV 447
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
N+MK +SP +TY+ LI YG+ +D+ LK M+ +G P+ ++Y LI
Sbjct: 448 NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKG 507
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
L + + M + + + ++D + G ++ +F K +L
Sbjct: 508 SKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEML 556
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 6/177 (3%)
Query: 121 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
+I F K + K I N +I L G + EA E+ LKP + YN
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603
Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
S+I GY G + EMK + P TY LI K + I++ ++
Sbjct: 604 SLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK----EGIELTERLFGEM 659
Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
PD + YN ++ +A G +++ K M+ K + L +T +++ + G L
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKL 716
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC + +E R F EM +LKP L +YN ++H Y+ G +A +M E ++
Sbjct: 643 LCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
TY+ LI K E+ + M P+ TYN++++
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVK 743
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
G ME+A ++M ++ YNS+I G K+GK E ++EM + P++DTY
Sbjct: 679 GDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTY 738
Query: 213 DGLIQAYGKYKMY 225
+ +++ + + K Y
Sbjct: 739 NIIVKGHCEVKDY 751
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC+ G + +A+ F++M+ + + IYN IIHG K ++A + + + P
Sbjct: 465 LCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGLLKRMEGTY 267
TY+ +I K E DM + MK DGC+PD TYN+LI+ +GL+ +E
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE-LI 583
Query: 268 KSMLTKRMHLRSSTMVAILD 287
+ M SST+ ++D
Sbjct: 584 EEMKVCGFSADSSTIKMVID 603
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
+IG LC +G ++ + +EM G + P + ++++I + K GK EA NEM
Sbjct: 284 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343
Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
++P + TY+ LI + K E + +M GC PD +TY++LI + A +
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403
Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
++ + +K + + T ++ + G L+ ++ ++ +++ P
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP---------PS 454
Query: 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN 382
V + L D G+ L+ A + +M+ +++
Sbjct: 455 VVTYGILLDGLCDNGE-----------------LNKAL--------EIFEKMQKSRMTLG 489
Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
+ NII+ L L + VKPD+VT ++
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 5/314 (1%)
Query: 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193
K R + +I LC +G + EA+ M + +P Y +++ K G A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253
L +M+E N+ Y +I + K +D+ M++ G D +TY+ LI
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313
G + M+ + + T A++D ++ G L + ++ Y ++
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349
Query: 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS---V 370
L + + K + + D + S+ ++V L++ C + +D +
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC--KAKRVDDGMRL 407
Query: 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI 430
RE+ S + N T N ++L + + + L E+ +R V P +VT GIL D
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 431 GFDGTGALEMWKRI 444
+ ALE+++++
Sbjct: 468 NGELNKALEIFEKM 481
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 12/157 (7%)
Query: 121 QIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
++ + ++++ ++KSR I +N II +C +++A F + +KP +
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNI--IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMM 235
YN +I G K G +EA + +MKE +P TY+ LI+A+ G + +++ ++ M
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL-IEEM 586
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
K+ G S D T ++I + +R++ ++ ML+
Sbjct: 587 KVCGFSADSSTIKMVIDMLS----DRRLDKSFLDMLS 619
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
C+ G + A FQEM + PS+ Y ++ G G+ N+AL +M++ ++
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
Y+ +I D+ + G PD +TYN++I GL K+ +
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI-----GGLCKKGSLSEA 544
Query: 269 SMLTKRM 275
ML ++M
Sbjct: 545 DMLFRKM 551
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 17/396 (4%)
Query: 111 RFLKNSSRSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
R +R++Q V K +E + I + + +I C + + A
Sbjct: 75 RLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL 134
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228
+P ++++++G+ G+ +EA+ ++ M EM P T LI E
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288
+ + M G PD +TY ++ +G ++ M + + ++D+
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 289 YMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348
G D + + +K D+V + + + DD L IGR
Sbjct: 255 LCKDGSFDDALSLFNEM--EMKGIKADVV-TYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311
Query: 349 LVWCLRLLSHACLLSHRG----IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
+ + + + G + EM + + + T N ++ + K
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371
Query: 405 LLSELPTRHVKPDIVTIGILYD----ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL 460
+ + ++ +PDIVT IL + A+R+ DG G + T+ NT LVL
Sbjct: 372 MFDLMVSKGCEPDIVTYSILINSYCKAKRVD-DGMRLFREISSKGLIPNTITYNT--LVL 428
Query: 461 AVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496
G L +E++ + TY L+D
Sbjct: 429 GFCQSGK-LNAAKELFQEMVSRGVPPSVVTYGILLD 463
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
C+ +EEA+ QEM+G +P + Y +II Y + +F + L+EM+ P S
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294
Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK- 268
TY ++ + K ++E MK GC PD + YN LI A AG L+ E ++
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354
Query: 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
M + + +ST +++ Y + DK + K + +S
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 6/210 (2%)
Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
+V++M +E S N I+ L + EEA+R M+ KP YN +I
Sbjct: 277 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 336
Query: 182 HGYSKIGKFNEA-LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKLDG 239
H ++ G+ EA +F EM E+ +S + TY+ +I Y + D+ I++ +M +
Sbjct: 337 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 396
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVAILDAYMNFGMLDKM 298
C+PD TY L++ G + + K M+TK + L ST ++ M +
Sbjct: 397 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWA 456
Query: 299 EKFYKRLLNSR-TPLKEDLVRKLAEVYIKN 327
++ +++ TP + L EV KN
Sbjct: 457 YCLFEEMISQDITPRHRTCLLLLEEVKKKN 486
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 145 IIGMLCEEGLMEEAVRAFQ-EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
+I L G +EEA R F+ EM + + YNS+I Y + ++A+ L EM+
Sbjct: 335 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394
Query: 204 NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNLLIQEFACAGLLK 261
NL +P TY L+++ K E+ LK M+ S D TY LIQ A + +
Sbjct: 395 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 454
Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
++ M+++ + R T + +L+ M + E+
Sbjct: 455 WAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERI 494
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
II C++ + EME P+ Y +I+ + +F EAL MK
Sbjct: 265 IIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSG 324
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKM-MKLDGCSPDHITYNLLI-------QEFAC 256
P S Y+ LI + +E + ++ M G S + TYN +I +E
Sbjct: 325 CKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKA 384
Query: 257 AGLLKRMEGT 266
LLK ME +
Sbjct: 385 IELLKEMESS 394
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 41/290 (14%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FN+ +I E G ME+AV+A +M+ L P+ YN++I GY GK + L+
Sbjct: 118 FNA--VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDL 175
Query: 200 MKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
M E +++ P T++ L+QA+ K K +E +K M+ G PD +TYN + +
Sbjct: 176 MLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235
Query: 257 AGLLKRMEG--TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
G R E K ++ ++ T ++ Y G + +F +R+ R
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVE--- 292
Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
A + + N + + ++ D GID V+ M
Sbjct: 293 ------ANLVVFNSLINGFVEVMD-------------------------RDGIDEVLTLM 321
Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
+ V+ +V T + ++ A+ + + E+ VKPD IL
Sbjct: 322 KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 371
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%)
Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
KP+ ++ GY + G+ + L F+ MKEM + ++ LI + + D ID
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDE 316
Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290
L +MK D ITY+ ++ ++ AG +++ +K M+ + + + Y+
Sbjct: 317 VLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYV 376
Query: 291 NFGMLDKMEKFYKRLLNSRTP 311
K E+ + L+ P
Sbjct: 377 RAKEPKKAEELLETLIVESRP 397
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
+P++ I+ ++I G+ G ++A+ N+M + +SP T++ L+ Y + K + +
Sbjct: 396 RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEE 455
Query: 231 CLKMMKLDGCSPDHITYNLLIQEFACAGL 259
L+MM+ G P++ T+ LL + + AGL
Sbjct: 456 VLQMMRGCGVKPENSTFLLLAEAWRVAGL 484
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 158/378 (41%), Gaps = 43/378 (11%)
Query: 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
K++ +L E G EA F+ + +PSL Y +++ + ++ ++E+++
Sbjct: 50 KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109
Query: 204 NLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
S ++ +I A+ + M D + LKM +L G +P TYN LI+ + AG +R
Sbjct: 110 GTKLDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 168
Query: 263 MEGTYKSMLTKR---MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-- 317
ML + + T ++ A+ +++ + K++ ++ D V
Sbjct: 169 SSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKM--EECGVRPDTVTY 226
Query: 318 RKLAEVYIKNYMFSRLDD------LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV- 370
+A Y++ R + + + A GRT C ++ C R D +
Sbjct: 227 NTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRT----CGIVVGGYC-REGRVRDGLR 281
Query: 371 -VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
VR M+ +V N+ N ++ ++++ D + +L+ + +VK D++T + +A
Sbjct: 282 FVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNA-- 339
Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSL-EPYSREKKR 488
W G++ K ++ + + V H YS L + Y R K+
Sbjct: 340 -----------WSSAGYMEKAAQVFKEMVKAGVKPDAH-------AYSILAKGYVRAKEP 381
Query: 489 WTYQNLIDLVIKHNGKNL 506
+ L++ +I + N+
Sbjct: 382 KKAEELLETLIVESRPNV 399
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%)
Query: 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191
I +SR N +I C G M++A+R F +M F + P+++ + +++ GY ++ +
Sbjct: 392 IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 451
Query: 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
+A L M+ + P++ T+ L +A+ + DE + + +K
Sbjct: 452 KAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 120 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
+QI + D+++ ++K + F +I G ++EA+ F+E+E KP + Y
Sbjct: 456 KQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISY 515
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
NS+I+ K G +EA + EM+E L+P TY L++ +GK + + + M +
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV 575
Query: 238 DGCSPDHITYNLLI 251
GC P+ +TYN+L+
Sbjct: 576 KGCQPNIVTYNILL 589
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 118 RSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
RSR + FD++ I + +++ F ++ L ++ E+A + F++M+ +
Sbjct: 215 RSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEY 271
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
Y +I +IGK +EA+ NEM L+ Y+ L+Q K KM D+ M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
GC P+ TY+LL+ G L R++G
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGV 362
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
F++M+ P + YN +I + ++G+ +EA+ E++ + P +Y+ LI GK
Sbjct: 465 FEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGK 524
Query: 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY---KSMLTKRMHLR 278
DE + K M+ G +PD +TY+ L++ C G +R+E Y + ML K
Sbjct: 525 NGDVDEAHVRFKEMQEKGLNPDVVTYSTLME---CFGKTERVEMAYSLFEEMLVKGCQPN 581
Query: 279 SSTMVAILDAYMNFGMLDKMEKFYKRL 305
T +LD G + Y ++
Sbjct: 582 IVTYNILLDCLEKNGRTAEAVDLYSKM 608
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ L + G + EA R F +M F +K + Y S++ GK EA+ L+++ E
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
+ + Y+ + A GK K I + MK DG SPD TYN+LI F G
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
DMW K + + S ++ LC G EA+ ++ + +YN++ K
Sbjct: 397 DMWSFPVKGERDSYMS--MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGK 454
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
+ + + +MK+ SP TY+ LI ++G+ DE + ++ C PD I+
Sbjct: 455 LKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIIS 514
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
YN LI G + +K M K ++ T +++ FG +++E Y
Sbjct: 515 YNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMEC---FGKTERVEMAY 567
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 17/280 (6%)
Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
EA+ M +P L Y +++G K G + A LN+M++ L P Y+ +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
KYK D+ K M+ G P+ +TY+ LI G M+ ++++
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323
Query: 277 LRSSTMVAILDAYMNFGMLDKMEKFY----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
T A++DA++ G L + EK Y KR ++ L+ M R
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC-------MHDR 376
Query: 333 LDD---LGDDLASRIGRTELVWCLRLLSHACLLS--HRGIDSVVREMESAKVRWNVTTAN 387
LD+ + + + S+ ++V L+ C G++ V REM + N T N
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME-VFREMSQRGLVGNTVTYN 435
Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
I++ + D + + E+ + V P+I+T L D
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 5/294 (1%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
F +I +EG + EA + + EM ++ PS+ Y+S+I+G+ + +EA
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M + P TY+ LI+ + KYK +E + M G + +TYN+LIQ AG
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
+ +K M++ + T +LD G L+K ++ L S+
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506
Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-SHRGIDSVVREMESAK 378
+ E K DL +L+ + + ++V ++S C S D++ +EM+
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566
Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI----LYDAR 428
N N ++ A L+ D + L+ E+ + D TIG+ L+D R
Sbjct: 567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGR 620
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
+ + +++K +E R N +I LC G +A R +M + P + +
Sbjct: 270 KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
+++I + K GK EA +EM + ++ P TY LI + + DE + M
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
C PD +TYN LI+ F ++ ++ M + + + T ++ G D
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 298 MEKFYKRLLNSRTP 311
++ +K +++ P
Sbjct: 450 AQEIFKEMVSDGVP 463
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 25/306 (8%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
II LC+ M++A+ F+EME ++P++ Y+S+I G++++A L++M E
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
++P T+ LI A+ K E + M P +TY+ LI F L +
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEV 323
++ M++K T ++ + YKR+ +E R L
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCK----------YKRVEEGMEVFREMSQRGLVGNT 431
Query: 324 YIKNYMFSRLDDLGD-DLASRIGR--------TELVWCLRLLSHACLLSHRGIDSVVRE- 373
N + L GD D+A I + ++ LL C VV E
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433
++ +K+ + T NI++ K + L L + VKPD+V Y+ GF
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA----YNTMISGFC 547
Query: 434 GTGALE 439
G+ E
Sbjct: 548 RKGSKE 553
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/409 (19%), Positives = 148/409 (36%), Gaps = 41/409 (10%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N + +I C + A+ +M +P++ +S+++GY + +EA+ +
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
++M P + T++ LI + E + M GC PD +TY +++
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234
Query: 258 G-------LLKRME----------------------------GTYKSMLTKRMHLRSSTM 282
G LL +ME +K M TK + T
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
+++ N+G + ++ + L + ++K + L D++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREME---SAKVRWNVTTANIILLAYLKMKDF 399
R +V L++ C+ H +D + E S +V T N ++ + K K
Sbjct: 355 RSIDPSIVTYSSLINGFCM--HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 412
Query: 400 KHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLV 459
+ + E+ R + + VT IL D A E++K + I T +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508
L K L V+ L+ E +TY +I+ + K GK DG
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA-GKVEDG 520
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 116/280 (41%), Gaps = 13/280 (4%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
+++AV F EM PS+ ++ ++ +K+ KF+ + +M+ + + TY
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 215 LIQAYGKYKMYD-EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
LI + + + + KMMKL G P+ +T + L+ + + + M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKL-GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
+ T ++ + R++ + DLV V N + R
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGC--QPDLVTYGVVV---NGLCKRG 235
Query: 334 D-DLGDDLASRIGRTELVWCLRLLSHAC--LLSHRGIDSVV---REMESAKVRWNVTTAN 387
D DL +L +++ + +L + + + L ++ +D + +EME+ +R NV T +
Sbjct: 236 DTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 295
Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
++ + LLS++ R + PD+ T L DA
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 133/299 (44%), Gaps = 39/299 (13%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
C+EG + +A + F E+ +L+P++ +N++I+GY K+G +E ++M++ P
Sbjct: 250 FCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309
Query: 209 SDTYDGLIQAY-------GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261
TY LI A G + ++DE MC + G P+ + + LI + G +
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDE--MCKR-----GLIPNDVIFTTLIHGHSRNGEID 362
Query: 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR--- 318
M+ +Y+ ML+K + +++ + G L ++ R L+ D +
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI--RRGLRPDKITYTT 420
Query: 319 ------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG--IDS- 369
+ +V + +D G +L R+G + LV C + G ID+
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIEL-DRVGFSALV---------CGMCKEGRVIDAE 470
Query: 370 -VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+REM A ++ + T +++ A+ K D + LL E+ + P +VT +L +
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
S + GM C+EG + +A RA +EM +KP Y ++ + K G L EM+
Sbjct: 454 SALVCGM-CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512
Query: 202 EMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
P TY+ L+ K DM L M G PD ITYN L++
Sbjct: 513 SDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 114/304 (37%), Gaps = 36/304 (11%)
Query: 126 FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
F + +EKSR + F +I LC+E M+ A F EM L P+ I+ ++IHG
Sbjct: 295 FRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHG 354
Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
+S+ G+ + +M L P Y+ L+ + K + M G PD
Sbjct: 355 HSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414
Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
ITY LI F G ++ K M + L A++ G + E+ +
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474
Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363
+L R +K D V M GD +
Sbjct: 475 EML--RAGIKPDDV-------TYTMMMDAFCKKGD------------------------A 501
Query: 364 HRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
G +++EM+S +V T N++L K+ K+ +LL + V PD +T
Sbjct: 502 QTGF-KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNT 560
Query: 424 LYDA 427
L +
Sbjct: 561 LLEG 564
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
C++G + + +EM+ PS+ YN +++G K+G+ A + L+ M + + P
Sbjct: 495 FCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPD 554
Query: 209 SDTYDGLIQAYGKY 222
TY+ L++ + ++
Sbjct: 555 DITYNTLLEGHHRH 568
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 10/217 (4%)
Query: 234 MMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292
M LD P ++ +N+L+ +F G + + + + + + + +++ Y
Sbjct: 229 MEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKV 288
Query: 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVW 351
G LD+ + ++ SRT L K L D++ R + ++++
Sbjct: 289 GNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIF 348
Query: 352 CLRLLSHACLLSHRGIDSVVRE----MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407
+ H S G +++E M S ++ ++ N ++ + K D R ++
Sbjct: 349 TTLIHGH----SRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVD 404
Query: 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444
+ R ++PD +T L D G D ALE+ K +
Sbjct: 405 GMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%)
Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD 210
+EGL+ A+ +M KP++ Y ++ G+ K+GK +EA LNEM L P +
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460
Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
++ LI A+ K E + M GC PD T+N LI +K + M
Sbjct: 461 GFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM 520
Query: 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
+++ + + T +++A++ G + + K ++ +PL E
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I C+E + EAV F+EM KP + +NS+I G ++ + AL L +M
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ + TY+ LI A+ + E + M G D ITYN LI+ AG + +
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 265 GTYKSMLTKRMHLRSSTMVAIL-DAYMNFGMLDKMEKFYKRL-LNSRTP-------LKED 315
++ ML + H S+ IL + GM+++ +F K + L TP L
Sbjct: 585 SLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
Query: 316 LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR--LLSHACLLSHRGID 368
L R + MF +L G + T + W + + ACLL GI+
Sbjct: 644 LCRA-GRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIE 697
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 10/289 (3%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
F ++ C ++ A+ ++M P+ IY ++IH SK + NEAL L E
Sbjct: 218 FTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M M P ++T++ +I K+ +E + M + G +PD ITY L+ G
Sbjct: 278 MFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR 337
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-R 318
+ + + + + + ++ ++ ++ G LD + ++ S + +
Sbjct: 338 VDAAKDLFYRIPKPEIVIFNT----LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393
Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREME 375
L Y K + ++ D+ ++ + + L+ C L ID +V+ EM
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK--IDEAYNVLNEMS 451
Query: 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
+ ++ N N ++ A+ K + E+P + KPD+ T L
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 39/273 (14%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM-KEMNLSP 207
LC+ G ++ A F + KP + I+N++IHG+ G+ ++A L++M + P
Sbjct: 332 LCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 387
Query: 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267
TY+ LI Y K + L M+ GC P+ +Y +L+ F G +
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447
Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327
M + + ++ A+ + + + ++ + R K D VY N
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM--PRKGCKPD-------VYTFN 498
Query: 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN 387
+ S L ++ + + HA L +R+M S V N T N
Sbjct: 499 SLISGLCEVDE-----------------IKHALWL--------LRDMISEGVVANTVTYN 533
Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
++ A+L+ + K R L++E+ + D +T
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEIT 566
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 70/169 (41%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N ++ ++ C+ G ++EA EM LKP+ +N +I + K + EA+
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
EM P T++ LI + L+ M +G + +TYN LI F
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
G +K M+ + L T +++ G +DK ++++L
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I LC G++EEAV +EM P + +NS+I+G + G+ + L +++
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
+ P + T++ L+ K + + L DG P+H T+++L+Q L R
Sbjct: 665 IPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Query: 118 RSRQIPQVFDMWKNIE----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173
+ +IP+ ++++ + K + FNS +I LCE ++ A+ ++M + +
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNS--LISGLCEVDEIKHALWLLRDMISEGVVAN 528
Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
YN++I+ + + G+ EA +NEM TY+ LI+ + D+ +
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588
Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
M DG +P +I+ N+LI +G+++ K M+ + T ++++ G
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648
Query: 294 MLDKMEKFYKRLLNSRTP 311
++ +++L P
Sbjct: 649 RIEDGLTMFRKLQAEGIP 666
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 34/286 (11%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
A F +M + P+L + ++ + + + + AL L +M + P S Y LI
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIH 260
Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
+ K +E L+ M L GC PD T+N +I GL K + + RM +
Sbjct: 261 SLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI-----LGLCKFDRINEAAKMVNRMLI 315
Query: 278 RSSTMVAILDAYM-----NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
R I Y+ G +D + + R+ + L+ R
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV-------THGR 368
Query: 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSH-------RGIDS----VVREMESAKVRW 381
LDD ++ +++V ++ C + G+ V+ +M + +
Sbjct: 369 LDD------AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422
Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
NV + I++ + K+ +L+E+ +KP+ V L A
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%)
Query: 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192
+ S ++E +I LC G +++A F++M PS N +I+G + G E
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEE 617
Query: 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
A+ F EM +P T++ LI + ++ + ++ +G PD +T+N L+
Sbjct: 618 AVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Query: 253 EFACAGLL 260
G +
Sbjct: 678 WLCKGGFV 685
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 8/197 (4%)
Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
R + +++K +E R N +I LC G +A + +M + P+L +
Sbjct: 274 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 333
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
N++I + K GKF EA ++M + ++ P TY+ L+ + + D+ + M
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRME-GT--YKSMLTKRMHLRSSTMVAILDAYMNFGM 294
C PD +TYN LI+ F + KR+E GT ++ M + + + T ++ + G
Sbjct: 394 KDCFPDVVTYNTLIKGFCKS---KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450
Query: 295 LDKMEKFYKRLLNSRTP 311
D +K +K++++ P
Sbjct: 451 CDNAQKVFKQMVSDGVP 467
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 29/314 (9%)
Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
EAV M +P+L Y +++G K G + AL LN+M+ + ++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
I + KY+ D+ K M+ G P+ +TY+ LI G M+ K++
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY------- 328
+ T A++DA++ G + EK Y +D++++ + I Y
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLY-----------DDMIKRSIDPDIFTYNSLVNGF 375
Query: 329 -MFSRLD---DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWN 382
M RLD + + + S+ ++V L+ C S R D + REM + +
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC-KSKRVEDGTELFREMSHRGLVGD 434
Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWK 442
T ++ D + + + ++ + V PDI+T IL D G G LE
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD----GLCNNGKLEKAL 490
Query: 443 RIGFLFKTVEINTD 456
+ + EI D
Sbjct: 491 EVFDYMQKSEIKLD 504
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FN+ II LC+ +++A+ F+EME ++P++ Y+S+I G++++A L++
Sbjct: 263 FNT--IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M E ++P T++ LI A+ K + E + M PD TYN L+ F
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380
Query: 260 LKRMEGTYKSMLTK 273
L + + ++ M++K
Sbjct: 381 LDKAKQMFEFMVSK 394
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 11/309 (3%)
Query: 127 DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
DM + + FN+ +I +EG EA + + +M ++ P + YNS+++G+
Sbjct: 320 DMIEKKINPNLVTFNA--LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
+ ++A M + P TY+ LI+ + K K ++ + M G D +T
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437
Query: 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
Y LIQ G + +K M++ + T +LD N G L+K + + +
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497
Query: 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
S L + + E K DL L+ + + +V ++S C S R
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRL 555
Query: 367 ID---SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI 423
+ +++++M+ N T N ++ A+L+ D L+ E+ + D TIG+
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 615
Query: 424 ----LYDAR 428
L+D R
Sbjct: 616 VANMLHDGR 624
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
++ LC+ G + A+ +ME ++ + I+N+II K ++AL EM+
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 290
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P TY LI Y + + L M +P+ +T+N LI F G E
Sbjct: 291 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 350
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
Y M+ + + T ++++ + LDK ++ ++ +++
Sbjct: 351 KLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 58/288 (20%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I C + A+ +M +PS+ +S+++GY + ++A+ +++M EM
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
P + T+ LI + E + M GC P+ +TY +++ GL KR
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN-----GLCKRG- 239
Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
D + +L+KME + A+V
Sbjct: 240 ----------------------DTDLALNLLNKMEA----------------AKIEADVV 261
Query: 325 IKNYMFSRL------DD---LGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS--VVR 372
I N + L DD L ++ ++ R +V L+S CL S+ R D+ ++
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS--CLCSYGRWSDASQLLS 319
Query: 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
+M K+ N+ T N ++ A++K F L ++ R + PDI T
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 367
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
SR N ++ LCE G +A ++M ++P++ + ++I + K+GK EA
Sbjct: 219 SRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
N M +M++ P TY LI Y + DE +M+ +GC P+ + Y LI F
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338
Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311
+ ++ + M K + + T ++ Y G D ++ + ++ + R P
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP 395
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
F +I LC GL++EA + F ME P+ IY ++IHG+ K + + + E
Sbjct: 294 FTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE 353
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M + + + TY LIQ Y D M PD TYN+L+ C G
Sbjct: 354 MSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
+++ ++ M + M + T I+ G ++
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 133/340 (39%), Gaps = 40/340 (11%)
Query: 119 SRQIPQVFDMWK--------NIEKSRINEFNSQKIIG---MLCEEGLMEEAV-------R 160
SR +P + D + N I+ F +I+G +LC ++ V R
Sbjct: 77 SRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCR 136
Query: 161 A---FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
A +M +P L + S+++GY + +A+ +++ M P TY LI+
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196
Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
K + + M +G P+ +TYN L+ G + M+ +R+
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRTP---LKEDLVRKLAEVYIKNYMFSRL 333
T A++DA++ G L + ++ Y ++ S P L+ L M+ L
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC-------MYGLL 309
Query: 334 DDLGD--DLASRIG--RTELVWCLRLLSHACLLSHRGIDS--VVREMESAKVRWNVTTAN 387
D+ L R G E+++ L H S R D + EM V N T
Sbjct: 310 DEARQMFYLMERNGCYPNEVIY--TTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367
Query: 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+++ Y + + + +++ +R PDI T +L D
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 11/289 (3%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N +I LC+ + AV F +M +P++ YN+++ G +IG++ +A L
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+M + + P T+ LI A+ K E +M PD TY LI
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLLNSRTPLKEDL 316
GLL + M + ++ + + D M+ FY+ ++ + + +
Sbjct: 307 GLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE--MSQKGVVANTI 364
Query: 317 VRKLAEVYIKNYMFSRLDDLGDD----LASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372
V I+ Y D+ + ++SR ++ LL C ++
Sbjct: 365 T---YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421
Query: 373 E-MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420
E M ++ N+ T II+ K+ + L L ++ +KP+++T
Sbjct: 422 EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
LC G +E+A+ F+ M + ++ Y II G K+GK +A + + P
Sbjct: 408 LCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPN 467
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247
TY +I + + + E D K MK DG P+ Y
Sbjct: 468 VITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 5/242 (2%)
Query: 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
+FN+AL M P + L+ K YD + + M++ G P T N
Sbjct: 63 QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122
Query: 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
+++ + R M+ T ++L+ Y ++ ++ + ++L
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG- 181
Query: 309 RTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
K ++V L KN + +L + + + R +V L++ C + G
Sbjct: 182 -MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWG 240
Query: 367 IDS-VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
+ ++R+M ++ NV T ++ A++K+ + L + + V PD+ T G L
Sbjct: 241 DAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLI 300
Query: 426 DA 427
+
Sbjct: 301 NG 302
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
IN II +C+ G +E+A F + +KP++ Y ++I G+ + G +EA
Sbjct: 431 INIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSL 490
Query: 197 LNEMKEMNLSPQSDTY 212
+MKE P Y
Sbjct: 491 FKKMKEDGFLPNESVY 506
>sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880,
mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2
SV=1
Length = 540
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
EA R ++EM + + P+ + Y+ +I +SK+G ++L +EMK+ L+P + Y+ L+
Sbjct: 277 EAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLV 336
Query: 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH 276
+ +DE +K + +G PD +TYN +I+ AG L +M+++ +
Sbjct: 337 YVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLS 396
Query: 277 LRSSTMVAILDAYMNF 292
T A L+A +NF
Sbjct: 397 PTVDTFHAFLEA-VNF 411
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I + G + +++R + EM+ L P +E+YNS+++ ++ F+EA+ + ++ E
Sbjct: 300 MISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEG 359
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
L P S TY+ +I+ + D L M + SP T++ ++
Sbjct: 360 LKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLE 407
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 7/186 (3%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196
I +NS ++ +L E +EA++ +++ LKP YNS+I + GK + A
Sbjct: 329 IEVYNS--LVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNV 386
Query: 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256
L M NLSP DT+ ++A K + L MK+ P T+ L++ +
Sbjct: 387 LATMISENLSPTVDTFHAFLEAVNFEKTLE----VLGQMKISDLGPTEETFLLILGKLFK 442
Query: 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316
+ + M + + +A + ++ G L+K + Y + S+ + +
Sbjct: 443 GKQPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSE-MKSKGFVGNPM 501
Query: 317 VRKLAE 322
++KL E
Sbjct: 502 LQKLLE 507
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 2/194 (1%)
Query: 120 RQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
R + D++ +E R N +I LC G +A R M + P++ +
Sbjct: 272 RHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTF 331
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
N++I + K GK EA EM + ++ P + TY+ LI + + DE K M
Sbjct: 332 NALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS 391
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297
C P+ TYN LI F ++ ++ M + + + T I+ + G D
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDS 451
Query: 298 MEKFYKRLLNSRTP 311
+ +K+++++R P
Sbjct: 452 AQMVFKQMVSNRVP 465
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 122 IPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY 177
I ++ +E +RI FN+ II LC+ +E AV F EME ++P++ Y
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNT--IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296
Query: 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237
NS+I+ G++++A L+ M E ++P T++ LI A+ K E + + M
Sbjct: 297 NSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ 356
Query: 238 DGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
PD ITYNLLI F L + +K M++K
Sbjct: 357 RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 9/274 (3%)
Query: 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
EAV +M +P L Y ++++G K G + AL LN+M+ + ++ +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264
Query: 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
I + KY+ + M+ G P+ +TYN LI G +ML K++
Sbjct: 265 IDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI 324
Query: 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY-MFSRLD 334
+ T A++DA+ G L + EK ++ ++ + + D + + I + M +RLD
Sbjct: 325 NPNVVTFNALIDAFFKEGKLVEAEKLHEEMI--QRSIDPDTIT--YNLLINGFCMHNRLD 380
Query: 335 DLGDDLASRIGRTEL--VWCLRLLSHACLLSHRGIDSV--VREMESAKVRWNVTTANIIL 390
+ + + L + L + R D V REM + N T I+
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
+ + D +++ ++ + V DI+T IL
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSIL 474
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 30/318 (9%)
Query: 128 MWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183
+ N+ + +IN FN+ +I +EG + EA + +EM ++ P YN +I+G
Sbjct: 315 LLSNMLEKKINPNVVTFNA--LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372
Query: 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
+ + +EA M + P TY+ LI + K K ++ + M G +
Sbjct: 373 FCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432
Query: 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303
+TY +IQ F AG + +K M++ R+ T +L ++G LD +K
Sbjct: 433 TVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492
Query: 304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG------DDLASRIGRTELVWCLRLLS 357
L S L ++I N M + G D S + ++V ++S
Sbjct: 493 YLQKSEMELN---------IFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMIS 543
Query: 358 HAC---LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414
C LL D + R+M+ N T N ++ A L+ D L+ E+ +
Sbjct: 544 GLCSKRLLQEA--DDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGF 601
Query: 415 KPDIVTIGI----LYDAR 428
D TI + L+D R
Sbjct: 602 VGDASTISLVTNMLHDGR 619
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 40/285 (14%)
Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
I C + A+ +M +P + +S+++GY + ++A+ +++M EM
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
P + T+ LI + E + M GC PD +TY ++ GL KR +
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN-----GLCKRGD- 238
Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325
+D +N +L+KME +R + + +
Sbjct: 239 --------------------IDLALN--LLNKMEA-------ARIKANVVIFNTIIDSLC 269
Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDS--VVREMESAKVRWN 382
K DL ++ ++ R +V L++ CL ++ R D+ ++ M K+ N
Sbjct: 270 KYRHVEVAVDLFTEMETKGIRPNVVTYNSLIN--CLCNYGRWSDASRLLSNMLEKKINPN 327
Query: 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
V T N ++ A+ K L E+ R + PD +T +L +
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 50/274 (18%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
+++AV F +M PS+ +N ++ +K+ KF + +M+ + +S TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 215 LIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273
I + + ++ + + KMMKL G PD +T + L+ + +
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSK--------------- 167
Query: 274 RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333
R S VA++D + G YK + T L L ++ N S
Sbjct: 168 ----RISDAVALVDQMVEMG--------YKPDTFTFTTLIHGL-------FLHNKA-SEA 207
Query: 334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-ID---SVVREMESAKVRWNVTTANII 389
L D + R + +LV +++ C RG ID +++ +ME+A+++ NV N I
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLC---KRGDIDLALNLLNKMEAARIKANVVIFNTI 264
Query: 390 LLAYLKMKDFKHLRV---LLSELPTRHVKPDIVT 420
+ + K ++H+ V L +E+ T+ ++P++VT
Sbjct: 265 IDSLCK---YRHVEVAVDLFTEMETKGIRPNVVT 295
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 15/361 (4%)
Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
FN+ +I LC EG + EA +M G L + Y +I++G K+G AL L++
Sbjct: 229 FNT--LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286
Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
M+E ++ P Y +I K + + M G +P+ TYN +I F G
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346
Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
+ + M+ + ++ T A++ A + G L + EK +L+
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGID---SVVREMES 376
+ + K+ F + D +AS ++V ++ C + +D ++RE+
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYC--RAKRVDEGMQLLREISR 460
Query: 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436
+ N TT N ++ + ++ + + L E+ + V PD +T IL
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520
Query: 437 ALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYSREKKRWTYQNL 494
ALE+++ I ++++T + ++G KG + +++ SL + E TY +
Sbjct: 521 ALELFEVIQ--MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578
Query: 495 I 495
I
Sbjct: 579 I 579
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N F +I C G +A R ++M + P + +N++I K GK EA
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
+EM + P + TY+ +I + K+ +D+ +M SPD +T+N +I + A
Sbjct: 390 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRA 445
Query: 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
KR++ + M L + + +R L + T L+
Sbjct: 446 ---KRVD--------EGMQL--------------------LREISRRGLVANTTTYNTLI 474
Query: 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES- 376
EV N DL ++ S + + C LL C + ++ + E
Sbjct: 475 HGFCEVDNLN----AAQDLFQEMISHGVCPDTITCNILLYGFC--ENEKLEEALELFEVI 528
Query: 377 --AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
+K+ + NII+ K L LP V+PD+ T Y+ GF G
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT----YNVMISGFCG 584
Query: 435 TGAL 438
A+
Sbjct: 585 KSAI 588
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
CE +EEA+ F+ ++ + YN IIHG K K +EA + + P
Sbjct: 512 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571
Query: 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
TY+ +I + + ++ MK +G PD+ TYN LI+ AG + +
Sbjct: 572 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 59/309 (19%)
Query: 123 PQV-FDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179
P V +++ +E RI N ++ +I C+ + ++ F ++ +P + +N+
Sbjct: 122 PDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNT 181
Query: 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239
++HG + +EAL M E G ++A + EI G
Sbjct: 182 LLHGLCLEDRISEALALFGYMVET----------GFLEAVALFDQMVEI----------G 221
Query: 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299
+P IT+N LI G + M+ K +H+ T I++ G
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMG------ 275
Query: 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA 359
++++ L +L+ K+ E +IK ++V ++
Sbjct: 276 -------DTKSAL--NLLSKMEETHIK--------------------PDVVIYSAIIDRL 306
Query: 360 CLLSHRG-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
C H + EM + NV T N ++ + + + LL ++ R + PD+
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366
Query: 419 VTIGILYDA 427
+T L A
Sbjct: 367 LTFNALISA 375
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Query: 118 RSRQIPQVFDMWKNIEKSRIN--EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
+ ++ + ++++ I+ S+I+ II +C+ ++EA F + ++P ++
Sbjct: 514 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 573
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
YN +I G+ ++A + ++MK+ P + TY+ LI+ K D+ + M
Sbjct: 574 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
+ +G S D T ++ + G R++ ++ ML+
Sbjct: 634 RSNGFSGDAFTIK-MVADLITDG---RLDKSFSDMLS 666
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 2/182 (1%)
Query: 118 RSRQIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175
R++++ + + + I + + N +I CE + A FQEM + P
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 503
Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235
N +++G+ + K EAL ++ + + Y+ +I K DE +
Sbjct: 504 TCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSL 563
Query: 236 KLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295
+ G PD TYN++I F + + M +ST ++ + G +
Sbjct: 564 PIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEI 623
Query: 296 DK 297
DK
Sbjct: 624 DK 625
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 2/187 (1%)
Query: 124 QVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
+ F++++++EK S ++ + II L + G ++ A + FQ+M+ L+PS +++S++
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355
Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
K G+ + ++ EM+ P + + LI +Y K D MK G
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415
Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
P+ Y ++I+ A +G L+ +K M ST +L+ + G +D K
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 302 YKRLLNS 308
Y + N+
Sbjct: 476 YNSMTNA 482
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 90/182 (49%), Gaps = 2/182 (1%)
Query: 117 SRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174
++S ++ F +++ +++ ++ S ++ + + G ++ +++ + EM+GF +PS
Sbjct: 324 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 383
Query: 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234
++ S+I Y+K GK + AL +EMK+ P Y +I+++ K + K
Sbjct: 384 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKD 443
Query: 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294
M+ G P TY+ L++ A +G + Y SM + S+ +++L N +
Sbjct: 444 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRL 503
Query: 295 LD 296
+D
Sbjct: 504 VD 505
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 38/251 (15%)
Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167
+ + + +++ ++ +W ++KS R N II + G +E A+ F++ME
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEK 446
Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
P+ Y+ ++ ++ G+ + A+ N M L P +Y L+ ++ D
Sbjct: 447 AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDV 506
Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
L MK G S D ++L M+ I D
Sbjct: 507 AGKILLEMKAMGYSVDVCASDVL-------------------------------MIYIKD 535
Query: 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347
A ++ + K+ + + +S ++R+L E +KN ++ L + L G+
Sbjct: 536 ASVDLAL-----KWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKV 590
Query: 348 ELVWCLRLLSH 358
+LV +L+H
Sbjct: 591 DLVLYTSILAH 601
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD----TYDGLIQAYGKYKMYDE 227
PS E Y + G ++ F EM + + S D Y+ +IQ K + +
Sbjct: 203 PSDECYVVLFDGLNQGRDFVGIQSLFEEMVQ-DSSSHGDLSFNAYNQVIQYLAKAEKLEV 261
Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287
C K + GC D TYN L+ F GL + Y+SM L ST I+
Sbjct: 262 AFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIP 321
Query: 288 AYMNFGMLDKMEKFYKRL 305
+ G LD K ++++
Sbjct: 322 SLAKSGRLDAAFKLFQQM 339
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 44/214 (20%)
Query: 99 GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCEEGLME 156
GD + + + VI++L +++ ++ F +K ++S +I+ ++ + +GL
Sbjct: 239 GDLSFNAYNQVIQYL---AKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 295
Query: 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216
+A ++ ME Y II +K G+ + A +MKE L P + L+
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355
Query: 217 QAYGKYKMYDEIDMCLKM-MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275
+ GK +D +K+ M++ G
Sbjct: 356 DSMGKA---GRLDTSMKVYMEMQGFG---------------------------------- 378
Query: 276 HLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNS 308
H S+TM V+++D+Y G LD + + + S
Sbjct: 379 HRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKS 412
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 14/305 (4%)
Query: 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEM--EGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
+N ++ +I +L + EA+ ++ M EGF +PSL+ Y+S++ G K + +
Sbjct: 186 LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF--RPSLQTYSSLMVGLGKRRDIDSVM 243
Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
L EM+ + L P T+ I+ G+ +E LK M +GC PD +TY +LI
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL-LNSRTPLK 313
A L + ++ M T R T + +LD + + LD +++F+ + + P
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP-- 361
Query: 314 EDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS-- 369
D+V L + K F D D + + G + L L HR D+
Sbjct: 362 -DVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGI-LYDAR 428
+ MES V+ T + + Y K D ++ T+ + P+IV LY
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 429 RIGFD 433
+ G D
Sbjct: 480 KAGRD 484
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 23/286 (8%)
Query: 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214
++EA + F M+ LKP++ YN+++ G K GK EA+ M + P + T++
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT 613
Query: 215 LIQAYGKYKMYDEIDMCLKMM--KLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271
L K DE+ + LKM+ +D GC PD TYN +I G +K + M
Sbjct: 614 LFDCLCKN---DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM- 669
Query: 272 TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL--NSRTPLK---EDLVRK-LAEVYI 325
K ++ T+ +L + +++ K L + P EDL+ LAE I
Sbjct: 670 KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI 729
Query: 326 KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME----SAKVRW 381
N + S + L + R G + LV +R ++C H + E V+
Sbjct: 730 DNAV-SFSERLVANGICRDGDSILVPIIR---YSC--KHNNVSGARTLFEKFTKDLGVQP 783
Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427
+ T N+++ L+ + + + ++ + PD+ T L DA
Sbjct: 784 KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172
L + R R+ Q+F K+I + ++ + G ++EA++ EM +P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536
Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232
+ + NS+I+ K + +EA MKEM L P TY+ L+ GK E
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596
Query: 233 KMMKLDGCSPDHITYNLL 250
+ M GC P+ IT+N L
Sbjct: 597 EGMVQKGCPPNTITFNTL 614
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%)
Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
+I L + G + EA + F+ M + +P+ IYN +I+G+ K G+ + A M +
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
+ P TY L+ DE K +K G +PD + YNL+I + L+
Sbjct: 957 VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016
Query: 265 GTYKSMLTKR 274
+ M T R
Sbjct: 1017 VLFNEMKTSR 1026
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 1/159 (0%)
Query: 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL-LFLNEMKEMNLSPQS 209
+ G ++E ++EM + + +N +I G K G ++AL L+ + M + + SP +
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
TY LI K E + M GC P+ YN+LI F AG +K
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951
Query: 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
M+ + + T ++D G +D+ ++K L S
Sbjct: 952 MVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217
A+ F++M+ + P++ N+ ++ +K G+ EA +K++ L P S TY+ +++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252
Y K DE L M +GC PD I N LI
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLIN 546
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
L + G EA + F ++ L P YN ++ YSK+G+ +EA+ L+EM E P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Query: 209 SDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
+ LI K DE + M +K MKL P +TYN L+ G ++
Sbjct: 538 VIVVNSLINTLYKADRVDEAWKMFMRMKEMKL---KPTVVTYNTLLAGLGKNGKIQEAIE 594
Query: 266 TYKSMLTKRMHLRSSTMVAILD 287
++ M+ K + T + D
Sbjct: 595 LFEGMVQKGCPPNTITFNTLFD 616
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 19/264 (7%)
Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227
++P L YN +I G + A ++K P TY+ L+ AYGK DE
Sbjct: 779 LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838
Query: 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAIL 286
+ K M C + IT+N++I AG + Y +++ R + T ++
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 287 DAYMNFGMLDKMEKFYKRLLN----SRTPLKEDLVR---KLAEVYIKNYMFSRLDDLG-- 337
D G L + ++ ++ +L+ + L+ K E +F R+ G
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958
Query: 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK 397
DL + + LV CL ++ G+ +E++ + + +V N+I+ K
Sbjct: 959 PDLKT---YSVLVDCLCMVGRV----DEGL-HYFKELKESGLNPDVVCYNLIINGLGKSH 1010
Query: 398 DFKHLRVLLSELPT-RHVKPDIVT 420
+ VL +E+ T R + PD+ T
Sbjct: 1011 RLEEALVLFNEMKTSRGITPDLYT 1034
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168
+I L S R + +F+ K + + +I L G++EEA + + E++
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 169 ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215
L+P++ +N++I GYS GK A M SP + TY+ L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 37/186 (19%)
Query: 110 IRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKI-IGMLCEEGLMEEAVRAFQEMEG 167
I L S +R + V W +EK + + + I + LC+ G EA M
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391
Query: 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK------ 221
+ P+L YN++I G ++ + ++AL M+ + + P + TY I YGK
Sbjct: 392 QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451
Query: 222 ---------------------YKMYD--------EIDMCLKMMKLDGCSPDHITYNLLIQ 252
+Y E +K G PD +TYN++++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 253 EFACAG 258
++ G
Sbjct: 512 CYSKVG 517
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 145 IIGMLCEEGLMEEAVRAFQEME-GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203
II L + +EEA+ F EM+ + P L YNS+I G EA NE++
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 204 NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250
L P T++ LI+ Y + + M G SP+ TY L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%)
Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
LF K++ + P+ TY+ LI + M + +K GC PD TYN L+ +
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830
Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309
+G + + YK M T + T ++ + G +D Y L++ R
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
N + LC+ + A++ +M P + YN+II G K G+ EA+ F
Sbjct: 607 NTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFF 666
Query: 198 NEMKEM 203
++MK++
Sbjct: 667 HQMKKL 672
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,269,009
Number of Sequences: 539616
Number of extensions: 7698362
Number of successful extensions: 23314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 19299
Number of HSP's gapped (non-prelim): 2716
length of query: 510
length of database: 191,569,459
effective HSP length: 122
effective length of query: 388
effective length of database: 125,736,307
effective search space: 48785687116
effective search space used: 48785687116
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)