Query 010459
Match_columns 510
No_of_seqs 568 out of 3008
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.2E-68 2.6E-73 564.9 46.3 463 31-506 367-865 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.1E-68 1.3E-72 559.5 47.9 472 20-500 392-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3.4E-68 7.3E-73 571.0 35.7 459 29-507 116-676 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 6.3E-67 1.4E-71 561.1 37.9 460 25-507 213-710 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-65 4.6E-70 536.9 40.9 424 61-508 87-548 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.2E-59 1.3E-63 488.1 37.1 443 20-486 109-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-24 1.2E-28 232.7 46.2 391 105-508 501-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 9.9E-24 2.1E-28 230.7 46.2 384 108-503 436-819 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.1E-20 1.1E-24 181.5 33.5 310 113-470 45-364 (389)
10 PRK11788 tetratricopeptide rep 99.9 8.9E-20 1.9E-24 179.8 34.0 277 102-419 68-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 9.2E-17 2E-21 166.6 41.2 331 107-447 46-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 7.6E-16 1.7E-20 159.8 40.9 331 66-412 47-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-15 2.4E-20 158.9 41.9 365 106-481 130-570 (615)
14 PRK11447 cellulose synthase su 99.8 2E-15 4.4E-20 167.2 44.8 367 102-480 302-738 (1157)
15 PRK11447 cellulose synthase su 99.8 3.3E-15 7.2E-20 165.5 45.4 421 70-507 121-690 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.8 4.7E-15 1E-19 154.2 40.1 357 142-507 130-561 (615)
17 KOG4422 Uncharacterized conser 99.8 1.4E-14 3.1E-19 132.3 34.4 379 105-496 118-566 (625)
18 PRK10049 pgaA outer membrane p 99.7 8.7E-14 1.9E-18 147.6 43.5 371 105-489 51-461 (765)
19 KOG4626 O-linked N-acetylgluco 99.7 7.5E-15 1.6E-19 139.9 30.5 363 64-449 119-487 (966)
20 KOG4626 O-linked N-acetylgluco 99.7 5.8E-15 1.2E-19 140.7 28.9 381 104-499 117-501 (966)
21 KOG4422 Uncharacterized conser 99.7 7.2E-14 1.6E-18 127.8 32.1 244 94-342 198-461 (625)
22 PRK10049 pgaA outer membrane p 99.7 1.2E-12 2.6E-17 139.0 41.5 357 71-446 59-455 (765)
23 PRK14574 hmsH outer membrane p 99.7 3E-12 6.5E-17 133.7 42.3 183 72-268 45-227 (822)
24 PRK14574 hmsH outer membrane p 99.6 6.2E-12 1.3E-16 131.4 37.9 380 113-506 44-468 (822)
25 PF13429 TPR_15: Tetratricopep 99.6 2.4E-14 5.2E-19 133.9 13.2 261 144-410 13-275 (280)
26 PRK09782 bacteriophage N4 rece 99.6 9.3E-11 2E-15 125.2 41.5 104 102-212 180-286 (987)
27 PRK10747 putative protoheme IX 99.6 2.7E-11 5.8E-16 118.8 33.1 281 152-444 97-387 (398)
28 TIGR00540 hemY_coli hemY prote 99.5 4.3E-11 9.3E-16 118.0 32.4 289 151-444 96-396 (409)
29 PRK10747 putative protoheme IX 99.5 4.7E-11 1E-15 117.0 32.4 283 116-411 97-389 (398)
30 PF13429 TPR_15: Tetratricopep 99.5 1.8E-13 3.9E-18 128.1 12.9 262 108-376 13-276 (280)
31 TIGR00540 hemY_coli hemY prote 99.5 7.3E-11 1.6E-15 116.3 31.3 297 107-410 86-397 (409)
32 PRK09782 bacteriophage N4 rece 99.5 1.2E-10 2.6E-15 124.4 34.9 321 113-444 386-737 (987)
33 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.7E-18 90.7 6.8 50 172-221 1-50 (50)
34 KOG2002 TPR-containing nuclear 99.5 2.9E-10 6.4E-15 114.6 31.7 114 365-480 629-743 (1018)
35 KOG2076 RNA polymerase III tra 99.4 1.3E-09 2.8E-14 109.3 35.4 328 149-480 149-510 (895)
36 KOG2002 TPR-containing nuclear 99.4 3.3E-10 7.2E-15 114.2 31.0 392 106-507 310-735 (1018)
37 KOG2003 TPR repeat-containing 99.4 1.1E-10 2.5E-15 107.8 24.9 419 68-502 208-708 (840)
38 PF13041 PPR_2: PPR repeat fam 99.4 4.1E-13 8.9E-18 88.8 6.6 50 242-291 1-50 (50)
39 KOG4318 Bicoid mRNA stability 99.4 7E-12 1.5E-16 124.6 17.5 91 160-262 11-101 (1088)
40 KOG4318 Bicoid mRNA stability 99.4 5.3E-11 1.2E-15 118.4 21.0 265 133-433 19-286 (1088)
41 COG3071 HemY Uncharacterized e 99.4 4.5E-09 9.8E-14 96.4 30.5 285 116-410 97-388 (400)
42 KOG1155 Anaphase-promoting com 99.3 6.3E-09 1.4E-13 97.0 29.7 312 182-502 235-554 (559)
43 COG3071 HemY Uncharacterized e 99.3 3E-08 6.4E-13 91.1 33.0 291 145-444 88-387 (400)
44 KOG1126 DNA-binding cell divis 99.3 6.3E-10 1.4E-14 108.2 23.4 279 154-447 334-620 (638)
45 KOG1126 DNA-binding cell divis 99.3 8.9E-10 1.9E-14 107.1 24.4 285 118-413 334-621 (638)
46 KOG0495 HAT repeat protein [RN 99.3 3.6E-07 7.7E-12 89.0 40.0 391 97-503 473-866 (913)
47 TIGR02521 type_IV_pilW type IV 99.3 3.3E-09 7.1E-14 96.2 25.8 198 104-306 32-230 (234)
48 COG2956 Predicted N-acetylgluc 99.3 2E-08 4.3E-13 89.6 28.9 224 106-337 39-272 (389)
49 KOG2076 RNA polymerase III tra 99.3 6.1E-08 1.3E-12 97.6 35.8 352 75-439 153-547 (895)
50 TIGR02521 type_IV_pilW type IV 99.3 1.1E-08 2.4E-13 92.6 28.8 200 136-339 28-228 (234)
51 KOG2003 TPR repeat-containing 99.3 2E-09 4.3E-14 99.8 23.3 389 108-507 206-679 (840)
52 KOG0495 HAT repeat protein [RN 99.3 1.3E-07 2.9E-12 91.9 35.0 362 104-481 517-879 (913)
53 KOG1915 Cell cycle control pro 99.3 4.1E-07 8.9E-12 85.3 37.0 374 105-495 109-547 (677)
54 COG2956 Predicted N-acetylgluc 99.2 1.7E-08 3.7E-13 90.0 26.3 222 152-376 48-277 (389)
55 PRK12370 invasion protein regu 99.2 6.4E-09 1.4E-13 106.6 27.5 178 155-337 277-464 (553)
56 PRK12370 invasion protein regu 99.2 1.6E-08 3.5E-13 103.7 30.3 226 101-336 254-495 (553)
57 KOG1155 Anaphase-promoting com 99.2 4E-08 8.7E-13 91.7 29.4 254 112-374 236-492 (559)
58 KOG1915 Cell cycle control pro 99.1 4.8E-07 1E-11 84.9 31.7 364 105-481 75-465 (677)
59 KOG0547 Translocase of outer m 99.0 5.3E-07 1.2E-11 85.0 27.8 364 108-481 120-565 (606)
60 KOG1129 TPR repeat-containing 99.0 2.7E-08 5.8E-13 88.8 17.4 235 143-418 227-462 (478)
61 PF12569 NARP1: NMDA receptor- 99.0 4.5E-07 9.8E-12 90.2 28.0 290 111-410 12-332 (517)
62 KOG0547 Translocase of outer m 99.0 8.1E-07 1.8E-11 83.8 27.1 354 145-507 121-556 (606)
63 PF12569 NARP1: NMDA receptor- 99.0 9.1E-07 2E-11 88.1 28.8 289 146-444 11-331 (517)
64 KOG1129 TPR repeat-containing 99.0 1E-07 2.2E-12 85.2 18.8 229 178-447 227-458 (478)
65 KOG2047 mRNA splicing factor [ 98.9 3.4E-05 7.3E-10 75.5 35.8 430 68-505 176-711 (835)
66 cd05804 StaR_like StaR_like; a 98.9 2.3E-05 5E-10 76.2 36.1 199 105-308 8-215 (355)
67 KOG1173 Anaphase-promoting com 98.9 2.3E-06 5.1E-11 82.2 27.3 265 173-444 243-515 (611)
68 KOG1173 Anaphase-promoting com 98.9 3.5E-06 7.7E-11 81.0 27.8 285 134-428 239-532 (611)
69 KOG2047 mRNA splicing factor [ 98.9 6.6E-05 1.4E-09 73.6 36.2 368 105-488 140-584 (835)
70 KOG1840 Kinesin light chain [C 98.9 1.3E-06 2.8E-11 86.0 24.7 240 140-410 200-477 (508)
71 PRK11189 lipoprotein NlpI; Pro 98.9 2.9E-06 6.4E-11 79.7 26.4 96 176-273 66-161 (296)
72 PF12854 PPR_1: PPR repeat 98.9 3.6E-09 7.8E-14 62.8 4.1 34 377-410 1-34 (34)
73 PF12854 PPR_1: PPR repeat 98.9 3.5E-09 7.5E-14 62.9 4.0 30 171-200 4-33 (34)
74 KOG1840 Kinesin light chain [C 98.8 1.9E-06 4.2E-11 84.8 24.5 239 176-444 201-476 (508)
75 PRK11189 lipoprotein NlpI; Pro 98.8 5.9E-06 1.3E-10 77.7 26.8 218 188-413 40-266 (296)
76 KOG2376 Signal recognition par 98.8 9.9E-05 2.1E-09 71.7 34.0 374 110-501 19-505 (652)
77 KOG1156 N-terminal acetyltrans 98.8 7.6E-05 1.7E-09 73.3 33.1 360 114-484 52-470 (700)
78 COG3063 PilF Tfp pilus assembl 98.7 2.3E-05 5E-10 67.2 24.5 200 142-345 38-238 (250)
79 KOG1174 Anaphase-promoting com 98.7 0.00025 5.4E-09 66.1 33.7 304 100-411 191-499 (564)
80 KOG3785 Uncharacterized conser 98.7 0.0002 4.2E-09 65.4 30.9 357 109-492 63-498 (557)
81 KOG1174 Anaphase-promoting com 98.7 0.00016 3.4E-09 67.3 29.1 299 137-444 192-497 (564)
82 KOG0985 Vesicle coat protein c 98.6 9.4E-05 2E-09 76.0 29.5 205 102-336 983-1188(1666)
83 KOG1156 N-terminal acetyltrans 98.6 0.00033 7.1E-09 69.0 31.8 365 102-479 74-508 (700)
84 cd05804 StaR_like StaR_like; a 98.6 6.1E-05 1.3E-09 73.2 27.1 157 112-273 52-215 (355)
85 PF04733 Coatomer_E: Coatomer 98.6 2.7E-06 5.7E-11 79.0 15.9 248 152-445 14-263 (290)
86 PF04733 Coatomer_E: Coatomer 98.6 1.8E-06 3.9E-11 80.1 14.7 208 141-362 37-249 (290)
87 KOG1914 mRNA cleavage and poly 98.6 0.00077 1.7E-08 65.1 32.1 131 280-411 367-500 (656)
88 COG3063 PilF Tfp pilus assembl 98.6 9.2E-05 2E-09 63.7 23.4 131 176-308 37-168 (250)
89 KOG3616 Selective LIM binding 98.5 2.5E-05 5.4E-10 77.4 21.7 347 66-478 562-933 (1636)
90 KOG4162 Predicted calmodulin-b 98.5 0.00096 2.1E-08 67.1 31.9 378 96-481 316-782 (799)
91 PLN02789 farnesyltranstransfer 98.5 0.00025 5.3E-09 66.9 26.9 222 141-395 39-267 (320)
92 PRK04841 transcriptional regul 98.5 0.00053 1.2E-08 75.6 33.4 333 149-481 384-759 (903)
93 KOG4340 Uncharacterized conser 98.5 5.5E-05 1.2E-09 67.3 20.1 302 141-478 12-335 (459)
94 KOG3785 Uncharacterized conser 98.4 0.0013 2.9E-08 60.1 28.6 294 144-450 156-493 (557)
95 KOG1070 rRNA processing protei 98.4 0.00012 2.6E-09 77.7 25.0 182 247-432 1500-1685(1710)
96 KOG1070 rRNA processing protei 98.4 0.00018 3.8E-09 76.6 25.8 224 173-400 1457-1688(1710)
97 PRK04841 transcriptional regul 98.4 0.0011 2.4E-08 73.1 33.9 332 113-445 384-758 (903)
98 KOG4340 Uncharacterized conser 98.4 0.0005 1.1E-08 61.3 24.4 292 105-410 12-337 (459)
99 KOG3616 Selective LIM binding 98.4 0.00015 3.2E-09 72.1 23.3 165 142-338 768-932 (1636)
100 TIGR03302 OM_YfiO outer membra 98.4 8.7E-05 1.9E-09 67.5 20.6 163 141-307 35-231 (235)
101 KOG1128 Uncharacterized conser 98.4 2.5E-05 5.5E-10 77.5 17.4 214 178-411 402-615 (777)
102 TIGR00756 PPR pentatricopeptid 98.4 6.9E-07 1.5E-11 53.8 4.2 33 176-208 2-34 (35)
103 COG5010 TadD Flp pilus assembl 98.3 0.00013 2.8E-09 64.1 19.0 160 107-271 70-229 (257)
104 KOG1128 Uncharacterized conser 98.3 2.4E-05 5.2E-10 77.7 16.0 214 211-444 400-613 (777)
105 TIGR00756 PPR pentatricopeptid 98.3 9.8E-07 2.1E-11 53.1 4.3 33 246-278 2-34 (35)
106 PLN02789 farnesyltranstransfer 98.3 0.0014 3.1E-08 61.7 27.3 216 105-327 39-268 (320)
107 TIGR03302 OM_YfiO outer membra 98.3 0.00014 3.1E-09 66.0 20.3 172 101-273 31-232 (235)
108 KOG1125 TPR repeat-containing 98.3 8.7E-05 1.9E-09 72.0 18.6 220 185-409 296-524 (579)
109 KOG4162 Predicted calmodulin-b 98.3 0.0056 1.2E-07 61.9 31.5 368 133-507 317-773 (799)
110 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.1E-11 52.0 4.2 32 176-207 3-34 (34)
111 KOG3617 WD40 and TPR repeat-co 98.2 0.0064 1.4E-07 61.9 30.8 106 382-506 1079-1189(1416)
112 KOG2376 Signal recognition par 98.2 0.0054 1.2E-07 60.1 29.2 345 144-507 17-436 (652)
113 PF13812 PPR_3: Pentatricopept 98.2 2.1E-06 4.6E-11 51.2 4.2 33 245-277 2-34 (34)
114 KOG0985 Vesicle coat protein c 98.2 0.0017 3.7E-08 67.2 26.8 252 110-410 1055-1306(1666)
115 KOG1125 TPR repeat-containing 98.2 0.00024 5.2E-09 69.1 19.3 251 148-403 294-562 (579)
116 KOG0548 Molecular co-chaperone 98.2 0.0031 6.8E-08 61.0 26.1 90 248-340 228-324 (539)
117 COG5010 TadD Flp pilus assembl 98.2 0.00051 1.1E-08 60.4 19.1 161 248-411 70-230 (257)
118 PRK15359 type III secretion sy 98.2 9.4E-05 2E-09 61.2 14.2 92 145-238 30-121 (144)
119 PRK10370 formate-dependent nit 98.2 0.00068 1.5E-08 59.4 20.2 119 152-273 52-173 (198)
120 PRK15179 Vi polysaccharide bio 98.1 0.0018 3.9E-08 67.5 26.3 133 137-273 84-217 (694)
121 KOG1914 mRNA cleavage and poly 98.1 0.011 2.3E-07 57.6 29.5 375 99-481 16-500 (656)
122 PRK15359 type III secretion sy 98.1 0.00029 6.4E-09 58.2 16.1 96 176-273 26-121 (144)
123 PRK10370 formate-dependent nit 98.1 0.00024 5.3E-09 62.2 16.1 120 187-309 52-174 (198)
124 KOG3081 Vesicle coat complex C 98.1 0.0013 2.9E-08 57.9 19.8 118 146-273 115-236 (299)
125 PF01535 PPR: PPR repeat; Int 98.0 5.6E-06 1.2E-10 48.1 3.1 29 176-204 2-30 (31)
126 PF10037 MRP-S27: Mitochondria 98.0 5.7E-05 1.2E-09 72.9 10.8 127 96-222 59-186 (429)
127 PF01535 PPR: PPR repeat; Int 98.0 8.4E-06 1.8E-10 47.4 3.3 29 246-274 2-30 (31)
128 PRK14720 transcript cleavage f 98.0 0.0058 1.3E-07 64.6 25.8 128 102-236 30-176 (906)
129 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00047 1E-08 66.4 16.1 121 144-270 174-294 (395)
130 COG4783 Putative Zn-dependent 97.9 0.0057 1.2E-07 58.7 22.8 116 220-339 317-433 (484)
131 KOG3081 Vesicle coat complex C 97.9 0.012 2.7E-07 52.0 23.0 207 108-330 46-257 (299)
132 PF06239 ECSIT: Evolutionarily 97.9 0.0003 6.4E-09 60.4 12.8 106 135-259 43-153 (228)
133 PRK15179 Vi polysaccharide bio 97.9 0.008 1.7E-07 62.8 25.8 131 278-411 85-216 (694)
134 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.3E-09 53.9 10.8 78 144-221 30-116 (120)
135 KOG3617 WD40 and TPR repeat-co 97.9 0.011 2.3E-07 60.3 25.1 310 73-444 812-1171(1416)
136 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.4E-09 69.1 13.0 124 134-257 61-186 (429)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00099 2.1E-08 54.5 15.2 60 211-271 53-112 (135)
138 PRK14720 transcript cleavage f 97.9 0.01 2.2E-07 62.8 25.7 128 137-271 29-176 (906)
139 KOG1127 TPR repeat-containing 97.9 0.0035 7.6E-08 65.0 21.3 55 105-161 494-548 (1238)
140 PF08579 RPM2: Mitochondrial r 97.8 0.0003 6.5E-09 53.4 10.3 77 179-255 30-115 (120)
141 PF06239 ECSIT: Evolutionarily 97.8 0.00021 4.6E-09 61.2 10.7 127 159-306 34-166 (228)
142 COG4783 Putative Zn-dependent 97.8 0.0025 5.4E-08 61.1 18.8 198 101-324 272-472 (484)
143 KOG1127 TPR repeat-containing 97.8 0.037 7.9E-07 57.9 27.7 163 140-307 493-658 (1238)
144 TIGR02552 LcrH_SycD type III s 97.8 0.0015 3.3E-08 53.3 15.5 99 138-238 16-114 (135)
145 PF09976 TPR_21: Tetratricopep 97.8 0.002 4.3E-08 53.4 15.5 113 152-268 24-142 (145)
146 KOG0548 Molecular co-chaperone 97.8 0.046 9.9E-07 53.3 26.5 368 111-500 10-471 (539)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0026 5.7E-08 61.3 15.7 122 249-410 174-295 (395)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0033 7.2E-08 52.1 14.5 126 105-235 14-144 (145)
149 KOG2053 Mitochondrial inherita 97.6 0.14 3E-06 53.2 30.0 198 107-309 45-256 (932)
150 KOG2053 Mitochondrial inherita 97.6 0.14 3E-06 53.2 35.9 170 102-275 76-257 (932)
151 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.8E-08 58.6 14.7 130 140-273 2-136 (280)
152 cd00189 TPR Tetratricopeptide 97.5 0.0024 5.2E-08 47.7 11.7 21 248-268 72-92 (100)
153 KOG0624 dsRNA-activated protei 97.5 0.077 1.7E-06 48.8 27.5 192 110-307 45-251 (504)
154 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.006 1.3E-07 48.3 13.8 21 180-200 45-65 (119)
155 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.3E-08 60.7 11.6 143 104-252 2-148 (280)
156 KOG0624 dsRNA-activated protei 97.4 0.093 2E-06 48.3 27.2 174 97-279 63-256 (504)
157 cd00189 TPR Tetratricopeptide 97.4 0.0031 6.8E-08 47.1 11.4 95 212-308 3-97 (100)
158 PF04840 Vps16_C: Vps16, C-ter 97.4 0.12 2.7E-06 48.7 26.1 23 105-127 2-24 (319)
159 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0089 1.9E-07 47.3 13.9 98 176-273 4-105 (119)
160 PRK02603 photosystem I assembl 97.3 0.018 3.9E-07 49.3 15.4 129 140-294 36-166 (172)
161 PRK02603 photosystem I assembl 97.3 0.021 4.5E-07 48.9 15.6 130 173-328 34-165 (172)
162 CHL00033 ycf3 photosystem I as 97.3 0.0083 1.8E-07 51.2 13.1 94 174-268 35-137 (168)
163 PRK10866 outer membrane biogen 97.2 0.071 1.5E-06 48.4 19.3 190 108-306 37-239 (243)
164 KOG3060 Uncharacterized conser 97.2 0.14 2.9E-06 45.3 22.5 203 117-328 26-236 (289)
165 KOG1538 Uncharacterized conser 97.2 0.082 1.8E-06 52.7 19.9 41 192-235 618-658 (1081)
166 KOG3060 Uncharacterized conser 97.1 0.16 3.5E-06 44.9 20.6 163 106-274 55-221 (289)
167 PLN03088 SGT1, suppressor of 97.0 0.016 3.5E-07 56.0 14.1 87 149-237 12-98 (356)
168 PF12895 Apc3: Anaphase-promot 97.0 0.0011 2.4E-08 49.1 4.8 16 182-197 33-48 (84)
169 CHL00033 ycf3 photosystem I as 97.0 0.027 5.9E-07 47.9 13.8 96 138-234 34-138 (168)
170 PF12895 Apc3: Anaphase-promot 97.0 0.00097 2.1E-08 49.3 4.1 81 187-269 2-83 (84)
171 PF14938 SNAP: Soluble NSF att 97.0 0.12 2.6E-06 48.2 18.9 204 105-341 37-261 (282)
172 PRK15363 pathogenicity island 96.9 0.024 5.2E-07 46.6 11.9 91 145-237 41-131 (157)
173 PLN03088 SGT1, suppressor of 96.9 0.026 5.7E-07 54.5 14.5 87 113-202 12-98 (356)
174 KOG2796 Uncharacterized conser 96.9 0.035 7.7E-07 49.1 13.6 158 108-274 154-316 (366)
175 KOG2280 Vacuolar assembly/sort 96.9 0.65 1.4E-05 47.5 25.8 110 348-476 684-793 (829)
176 PF14559 TPR_19: Tetratricopep 96.8 0.0045 9.8E-08 43.5 6.3 23 214-236 30-52 (68)
177 PF03704 BTAD: Bacterial trans 96.8 0.017 3.7E-07 47.9 10.5 70 211-281 64-138 (146)
178 PF12688 TPR_5: Tetratrico pep 96.8 0.11 2.3E-06 41.1 14.2 87 183-271 10-102 (120)
179 PF12921 ATP13: Mitochondrial 96.7 0.029 6.3E-07 44.8 10.7 84 209-292 2-101 (126)
180 PRK10153 DNA-binding transcrip 96.7 0.15 3.2E-06 51.8 18.2 136 170-309 333-483 (517)
181 PRK10153 DNA-binding transcrip 96.7 0.18 3.9E-06 51.2 18.7 138 133-274 331-483 (517)
182 KOG2796 Uncharacterized conser 96.7 0.24 5.2E-06 44.0 16.7 241 63-322 71-327 (366)
183 PF04840 Vps16_C: Vps16, C-ter 96.7 0.6 1.3E-05 44.1 28.0 111 350-480 179-289 (319)
184 PF14559 TPR_19: Tetratricopep 96.6 0.0076 1.6E-07 42.3 6.3 52 221-273 3-54 (68)
185 PRK10866 outer membrane biogen 96.6 0.52 1.1E-05 42.8 20.2 174 145-338 38-236 (243)
186 PF12688 TPR_5: Tetratrico pep 96.6 0.13 2.7E-06 40.7 13.4 103 147-255 9-117 (120)
187 PRK15363 pathogenicity island 96.6 0.044 9.6E-07 45.1 11.0 91 320-411 41-131 (157)
188 PF13525 YfiO: Outer membrane 96.6 0.33 7.2E-06 42.7 17.5 185 105-298 7-197 (203)
189 PF13432 TPR_16: Tetratricopep 96.5 0.015 3.3E-07 40.3 7.0 55 147-202 5-59 (65)
190 PF14938 SNAP: Soluble NSF att 96.5 0.48 1E-05 44.2 18.9 123 358-481 124-265 (282)
191 KOG1538 Uncharacterized conser 96.3 0.31 6.8E-06 48.8 16.9 81 243-336 746-826 (1081)
192 PF03704 BTAD: Bacterial trans 96.3 0.026 5.7E-07 46.8 8.7 69 142-211 65-138 (146)
193 KOG3941 Intermediate in Toll s 96.3 0.043 9.3E-07 49.1 10.1 53 134-186 62-119 (406)
194 KOG3941 Intermediate in Toll s 96.2 0.043 9.2E-07 49.1 9.5 100 171-270 64-185 (406)
195 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.3 2.8E-05 42.8 25.5 146 279-428 397-545 (660)
196 PF12921 ATP13: Mitochondrial 96.2 0.096 2.1E-06 41.8 10.7 83 243-325 1-99 (126)
197 PF13432 TPR_16: Tetratricopep 96.2 0.026 5.7E-07 39.1 6.8 51 219-270 7-57 (65)
198 COG4235 Cytochrome c biogenesi 96.1 0.27 5.8E-06 44.9 14.0 113 311-426 153-268 (287)
199 KOG0553 TPR repeat-containing 96.0 0.082 1.8E-06 47.9 10.6 100 325-427 92-191 (304)
200 PRK10803 tol-pal system protei 95.9 0.17 3.6E-06 46.4 12.5 94 142-237 146-245 (263)
201 KOG0553 TPR repeat-containing 95.8 0.18 3.9E-06 45.8 11.8 95 219-317 91-185 (304)
202 smart00299 CLH Clathrin heavy 95.8 0.66 1.4E-05 37.9 14.8 83 145-235 13-95 (140)
203 PF13414 TPR_11: TPR repeat; P 95.8 0.055 1.2E-06 38.0 7.1 61 140-201 4-65 (69)
204 KOG2280 Vacuolar assembly/sort 95.7 2.9 6.3E-05 43.0 23.6 323 143-505 441-787 (829)
205 PF13414 TPR_11: TPR repeat; P 95.7 0.054 1.2E-06 38.0 6.9 25 177-201 6-30 (69)
206 KOG2041 WD40 repeat protein [G 95.6 3.1 6.8E-05 42.5 22.1 88 172-272 850-951 (1189)
207 PRK10803 tol-pal system protei 95.6 0.33 7.3E-06 44.4 13.0 96 211-308 145-246 (263)
208 COG4235 Cytochrome c biogenesi 95.6 0.24 5.2E-06 45.1 11.7 115 135-253 152-269 (287)
209 PF13371 TPR_9: Tetratricopept 95.5 0.13 2.8E-06 36.5 8.2 55 148-203 4-58 (73)
210 PF13170 DUF4003: Protein of u 95.5 1.3 2.8E-05 41.4 16.6 129 155-285 78-223 (297)
211 COG5107 RNA14 Pre-mRNA 3'-end 95.4 0.41 8.9E-06 46.0 12.9 148 138-291 396-547 (660)
212 PF13525 YfiO: Outer membrane 95.4 1.8 3.9E-05 38.1 17.1 45 389-435 147-195 (203)
213 PF13371 TPR_9: Tetratricopept 95.3 0.14 3E-06 36.4 7.8 52 219-271 5-56 (73)
214 PF13281 DUF4071: Domain of un 95.3 3 6.5E-05 40.1 19.3 164 144-309 146-335 (374)
215 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.74 1.6E-05 44.8 14.1 64 138-203 74-141 (453)
216 PF00637 Clathrin: Region in C 94.7 0.008 1.7E-07 49.7 -0.2 128 355-504 14-141 (143)
217 smart00299 CLH Clathrin heavy 94.7 0.89 1.9E-05 37.2 12.1 121 357-500 16-137 (140)
218 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.96 2.1E-05 44.1 13.4 66 171-238 72-141 (453)
219 PF13424 TPR_12: Tetratricopep 94.4 0.11 2.3E-06 37.5 5.3 23 212-234 49-71 (78)
220 PF13424 TPR_12: Tetratricopep 94.3 0.22 4.9E-06 35.8 6.9 62 245-306 6-73 (78)
221 PF13170 DUF4003: Protein of u 94.2 1.8 3.9E-05 40.5 14.1 60 366-425 161-224 (297)
222 COG4700 Uncharacterized protei 94.2 3 6.6E-05 35.3 18.7 127 206-336 86-215 (251)
223 PRK15331 chaperone protein Sic 94.1 0.57 1.2E-05 38.9 9.2 87 219-307 47-133 (165)
224 PF04053 Coatomer_WDAD: Coatom 94.0 0.73 1.6E-05 45.7 11.7 130 105-268 297-426 (443)
225 PF10300 DUF3808: Protein of u 93.9 3.3 7.2E-05 41.7 16.4 177 122-307 176-375 (468)
226 KOG4570 Uncharacterized conser 93.8 0.6 1.3E-05 42.7 9.6 65 66-130 24-91 (418)
227 KOG1920 IkappaB kinase complex 93.7 7.5 0.00016 42.5 18.7 117 276-409 932-1052(1265)
228 PF08631 SPO22: Meiosis protei 93.5 6.3 0.00014 36.6 25.0 163 114-279 4-192 (278)
229 PRK15331 chaperone protein Sic 93.5 0.81 1.8E-05 38.0 9.1 85 151-237 49-133 (165)
230 PF07035 Mic1: Colon cancer-as 93.4 4.2 9E-05 34.2 15.3 135 160-308 15-149 (167)
231 COG3629 DnrI DNA-binding trans 93.3 1.1 2.4E-05 41.0 10.7 78 210-288 154-236 (280)
232 PF09205 DUF1955: Domain of un 93.3 3.4 7.3E-05 32.9 12.0 56 358-414 96-151 (161)
233 COG3629 DnrI DNA-binding trans 93.0 1.5 3.2E-05 40.2 11.0 78 175-253 154-236 (280)
234 COG3118 Thioredoxin domain-con 93.0 7.3 0.00016 35.8 15.4 142 148-293 143-286 (304)
235 KOG2041 WD40 repeat protein [G 93.0 12 0.00027 38.4 24.4 54 242-304 850-903 (1189)
236 PF04053 Coatomer_WDAD: Coatom 93.0 4.3 9.4E-05 40.4 15.1 156 113-303 271-426 (443)
237 COG3898 Uncharacterized membra 92.7 9.5 0.0002 36.4 28.7 296 141-486 84-396 (531)
238 PF07035 Mic1: Colon cancer-as 92.7 5.3 0.00012 33.5 15.7 126 133-274 23-150 (167)
239 KOG4555 TPR repeat-containing 92.5 4.5 9.7E-05 32.1 11.7 91 148-239 52-145 (175)
240 PF09613 HrpB1_HrpK: Bacterial 92.4 4.4 9.5E-05 33.6 11.9 71 112-186 19-89 (160)
241 KOG0550 Molecular chaperone (D 92.2 11 0.00025 36.2 16.0 226 143-376 53-315 (486)
242 PF10300 DUF3808: Protein of u 92.1 5.9 0.00013 39.9 15.1 163 281-444 190-373 (468)
243 KOG2114 Vacuolar assembly/sort 92.0 18 0.0004 38.1 24.8 225 16-270 286-516 (933)
244 PF09205 DUF1955: Domain of un 91.9 5.4 0.00012 31.8 14.1 137 152-310 15-151 (161)
245 COG4700 Uncharacterized protei 91.9 7.3 0.00016 33.1 18.9 130 171-302 86-216 (251)
246 PF02259 FAT: FAT domain; Int 91.3 14 0.00031 35.5 17.4 63 382-444 145-210 (352)
247 KOG1920 IkappaB kinase complex 91.3 26 0.00057 38.6 20.7 31 206-237 788-820 (1265)
248 COG4105 ComL DNA uptake lipopr 91.1 11 0.00024 33.9 20.1 182 105-306 37-231 (254)
249 KOG4570 Uncharacterized conser 90.9 1.4 3E-05 40.5 8.0 102 133-238 58-164 (418)
250 PRK11906 transcriptional regul 90.7 17 0.00037 35.8 15.8 78 332-410 322-399 (458)
251 COG3898 Uncharacterized membra 90.6 16 0.00035 34.9 29.2 290 105-411 84-391 (531)
252 PF13281 DUF4071: Domain of un 90.6 17 0.00037 35.1 20.4 171 102-274 140-335 (374)
253 COG1729 Uncharacterized protei 90.5 5.5 0.00012 36.1 11.5 98 140-238 143-244 (262)
254 KOG2114 Vacuolar assembly/sort 90.5 15 0.00033 38.6 15.8 144 177-336 337-485 (933)
255 KOG1550 Extracellular protein 90.4 20 0.00043 37.1 17.3 184 120-310 229-428 (552)
256 KOG2610 Uncharacterized conser 90.1 16 0.00036 34.1 15.7 153 151-306 115-274 (491)
257 PF13428 TPR_14: Tetratricopep 90.0 1.4 3.1E-05 27.4 5.5 27 142-168 4-30 (44)
258 PRK11906 transcriptional regul 89.8 19 0.00041 35.5 15.3 130 104-236 252-399 (458)
259 PF13512 TPR_18: Tetratricopep 89.7 8.5 0.00018 31.3 10.9 79 109-187 16-95 (142)
260 PF07079 DUF1347: Protein of u 89.4 23 0.00049 34.7 32.3 370 105-481 79-523 (549)
261 PF10602 RPN7: 26S proteasome 89.0 7.2 0.00016 33.3 10.9 60 141-200 38-99 (177)
262 PF13176 TPR_7: Tetratricopept 88.7 1.1 2.4E-05 26.5 4.1 23 177-199 2-24 (36)
263 PF04184 ST7: ST7 protein; In 88.5 15 0.00033 36.4 13.6 53 253-305 268-321 (539)
264 PF13512 TPR_18: Tetratricopep 88.3 12 0.00027 30.4 11.9 53 186-238 22-76 (142)
265 PF13428 TPR_14: Tetratricopep 88.3 1.5 3.2E-05 27.4 4.7 25 283-307 5-29 (44)
266 PF04097 Nic96: Nup93/Nic96; 88.2 33 0.00072 36.0 17.2 46 105-152 113-158 (613)
267 COG0457 NrfG FOG: TPR repeat [ 88.1 17 0.00036 31.6 28.6 62 175-236 60-122 (291)
268 COG4105 ComL DNA uptake lipopr 88.0 20 0.00043 32.3 18.1 186 138-341 34-231 (254)
269 KOG0550 Molecular chaperone (D 88.0 27 0.00058 33.8 21.7 167 207-378 166-351 (486)
270 KOG0543 FKBP-type peptidyl-pro 87.9 7.2 0.00016 37.4 10.8 63 175-238 258-320 (397)
271 PF13762 MNE1: Mitochondrial s 87.8 10 0.00023 30.9 10.3 50 382-431 78-128 (145)
272 PF13929 mRNA_stabil: mRNA sta 87.8 22 0.00048 32.7 16.2 63 205-267 198-261 (292)
273 KOG2610 Uncharacterized conser 87.7 13 0.00028 34.8 11.9 152 221-375 115-274 (491)
274 COG3947 Response regulator con 87.6 23 0.00049 32.6 14.3 70 247-317 282-356 (361)
275 KOG0543 FKBP-type peptidyl-pro 87.6 7 0.00015 37.5 10.5 53 358-411 267-319 (397)
276 COG1729 Uncharacterized protei 87.0 12 0.00025 34.0 11.2 97 211-308 144-244 (262)
277 COG4649 Uncharacterized protei 86.7 18 0.00039 30.5 14.9 123 114-237 69-195 (221)
278 PF13762 MNE1: Mitochondrial s 86.6 14 0.0003 30.2 10.4 94 200-293 28-129 (145)
279 PF10602 RPN7: 26S proteasome 86.6 12 0.00025 32.1 10.7 62 175-236 37-100 (177)
280 COG4649 Uncharacterized protei 86.5 19 0.0004 30.4 14.1 124 185-308 69-196 (221)
281 KOG1130 Predicted G-alpha GTPa 86.4 8.1 0.00018 37.1 10.1 262 148-410 26-342 (639)
282 TIGR02561 HrpB1_HrpK type III 86.2 17 0.00037 29.7 10.6 52 115-168 22-73 (153)
283 PF13929 mRNA_stabil: mRNA sta 86.1 28 0.0006 32.1 14.5 96 102-197 163-261 (292)
284 PF13176 TPR_7: Tetratricopept 85.9 2.1 4.6E-05 25.3 4.2 23 247-269 2-24 (36)
285 KOG1941 Acetylcholine receptor 85.6 27 0.00059 33.1 12.9 54 355-408 129-187 (518)
286 PF09613 HrpB1_HrpK: Bacterial 85.3 20 0.00044 29.8 12.9 17 221-237 56-72 (160)
287 KOG4555 TPR repeat-containing 85.1 18 0.00038 28.9 11.6 91 183-274 52-145 (175)
288 COG3118 Thioredoxin domain-con 84.2 34 0.00075 31.5 18.0 143 182-328 142-286 (304)
289 PF11663 Toxin_YhaV: Toxin wit 84.1 0.79 1.7E-05 36.4 2.1 35 463-499 105-139 (140)
290 PHA02875 ankyrin repeat protei 84.0 7.6 0.00016 38.5 9.8 138 148-298 8-151 (413)
291 COG0457 NrfG FOG: TPR repeat [ 84.0 27 0.00059 30.2 28.2 167 139-306 59-229 (291)
292 KOG1258 mRNA processing protei 83.9 53 0.0012 33.4 31.7 368 112-503 88-490 (577)
293 PF00637 Clathrin: Region in C 83.8 1 2.2E-05 37.0 2.9 87 388-481 12-98 (143)
294 PF07079 DUF1347: Protein of u 83.7 47 0.001 32.7 29.3 321 108-445 133-522 (549)
295 PF08631 SPO22: Meiosis protei 83.1 39 0.00085 31.3 24.0 123 185-308 4-150 (278)
296 KOG0276 Vesicle coat complex C 82.8 20 0.00043 36.4 11.4 149 115-304 598-746 (794)
297 PF13431 TPR_17: Tetratricopep 82.8 2 4.3E-05 25.1 3.0 22 382-403 12-33 (34)
298 PHA02875 ankyrin repeat protei 82.3 31 0.00068 34.1 13.4 174 114-313 10-195 (413)
299 PF04184 ST7: ST7 protein; In 82.2 16 0.00034 36.3 10.4 126 151-289 212-341 (539)
300 PF00515 TPR_1: Tetratricopept 81.8 3.9 8.6E-05 23.5 4.2 27 176-202 3-29 (34)
301 KOG1585 Protein required for f 81.7 39 0.00085 30.3 16.7 26 105-130 33-58 (308)
302 PF02284 COX5A: Cytochrome c o 81.7 16 0.00035 27.7 8.0 45 262-306 28-72 (108)
303 PF11207 DUF2989: Protein of u 80.8 18 0.0004 31.3 9.3 77 186-264 119-198 (203)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 15 0.00033 27.5 7.4 44 193-236 26-69 (103)
305 PF07575 Nucleopor_Nup85: Nup8 80.0 55 0.0012 34.1 14.5 74 368-443 390-463 (566)
306 PF13374 TPR_10: Tetratricopep 80.0 4.9 0.00011 24.2 4.4 25 176-200 4-28 (42)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 79.6 18 0.00039 27.1 7.6 45 262-306 25-69 (103)
308 COG1747 Uncharacterized N-term 79.3 72 0.0016 32.0 20.7 170 133-309 60-235 (711)
309 COG1747 Uncharacterized N-term 78.9 75 0.0016 31.9 19.3 164 278-447 65-234 (711)
310 KOG2396 HAT (Half-A-TPR) repea 78.0 78 0.0017 31.6 29.9 75 102-178 104-178 (568)
311 PF13374 TPR_10: Tetratricopep 77.6 6.7 0.00014 23.6 4.5 26 246-271 4-29 (42)
312 KOG1130 Predicted G-alpha GTPa 77.4 45 0.00097 32.3 11.4 263 112-376 26-343 (639)
313 TIGR02561 HrpB1_HrpK type III 76.8 40 0.00087 27.7 11.6 50 187-238 23-73 (153)
314 PF02284 COX5A: Cytochrome c o 76.3 17 0.00036 27.6 6.7 42 195-236 31-72 (108)
315 PF02259 FAT: FAT domain; Int 76.0 75 0.0016 30.4 21.3 191 110-307 5-212 (352)
316 KOG2066 Vacuolar assembly/sort 75.3 1.2E+02 0.0025 32.2 26.7 48 140-191 393-440 (846)
317 PF13431 TPR_17: Tetratricopep 74.7 5.5 0.00012 23.2 3.3 22 243-264 12-33 (34)
318 PF07719 TPR_2: Tetratricopept 73.6 9.4 0.0002 21.6 4.2 22 179-200 6-27 (34)
319 KOG1585 Protein required for f 73.1 71 0.0015 28.8 17.9 84 177-270 34-117 (308)
320 PF00515 TPR_1: Tetratricopept 72.4 11 0.00024 21.5 4.3 29 140-168 2-30 (34)
321 PF07719 TPR_2: Tetratricopept 71.4 12 0.00025 21.2 4.3 28 141-168 3-30 (34)
322 PF07163 Pex26: Pex26 protein; 70.6 64 0.0014 29.6 10.2 86 180-267 89-181 (309)
323 KOG2066 Vacuolar assembly/sort 70.4 1.5E+02 0.0033 31.4 23.3 51 149-201 366-419 (846)
324 TIGR03504 FimV_Cterm FimV C-te 69.4 11 0.00024 23.6 3.8 24 285-308 5-28 (44)
325 KOG1941 Acetylcholine receptor 69.2 37 0.0008 32.3 8.7 165 105-269 85-271 (518)
326 KOG0403 Neoplastic transformat 69.0 1.2E+02 0.0027 29.8 15.4 25 212-236 348-372 (645)
327 COG4455 ImpE Protein of avirul 68.0 36 0.00078 30.0 7.8 52 181-233 8-59 (273)
328 KOG0890 Protein kinase of the 67.5 3E+02 0.0064 33.6 22.4 150 144-303 1388-1542(2382)
329 PF07163 Pex26: Pex26 protein; 67.0 65 0.0014 29.6 9.5 87 110-197 90-181 (309)
330 TIGR02508 type_III_yscG type I 66.8 54 0.0012 24.9 8.7 78 190-274 21-98 (115)
331 TIGR03504 FimV_Cterm FimV C-te 66.6 17 0.00038 22.7 4.3 24 250-273 5-28 (44)
332 PF11207 DUF2989: Protein of u 65.9 91 0.002 27.2 13.0 72 156-228 123-197 (203)
333 PF11663 Toxin_YhaV: Toxin wit 65.5 8.6 0.00019 30.7 3.4 32 360-393 107-138 (140)
334 PF11848 DUF3368: Domain of un 64.8 29 0.00062 22.1 5.2 31 256-286 14-44 (48)
335 PF07721 TPR_4: Tetratricopept 64.8 13 0.00028 19.9 3.2 18 145-162 7-24 (26)
336 COG3947 Response regulator con 64.7 1.2E+02 0.0026 28.1 14.7 74 159-234 107-191 (361)
337 PF11838 ERAP1_C: ERAP1-like C 63.8 1.3E+02 0.0029 28.3 21.1 82 225-309 146-231 (324)
338 COG5108 RPO41 Mitochondrial DN 63.3 57 0.0012 33.7 9.3 47 284-330 33-81 (1117)
339 PF13181 TPR_8: Tetratricopept 63.2 23 0.0005 20.0 4.4 26 176-201 3-28 (34)
340 PF11846 DUF3366: Domain of un 63.0 31 0.00066 29.9 7.0 53 115-167 120-172 (193)
341 PRK09687 putative lyase; Provi 60.0 1.5E+02 0.0032 27.6 29.1 191 100-308 34-234 (280)
342 COG4785 NlpI Lipoprotein NlpI, 59.2 1.3E+02 0.0028 26.7 12.8 63 174-237 99-161 (297)
343 PF11848 DUF3368: Domain of un 58.5 43 0.00092 21.4 5.2 29 187-215 15-43 (48)
344 PF10579 Rapsyn_N: Rapsyn N-te 57.4 26 0.00055 25.2 4.3 47 395-441 18-66 (80)
345 PF13174 TPR_6: Tetratricopept 57.4 12 0.00027 20.9 2.5 23 146-168 7-29 (33)
346 PF13934 ELYS: Nuclear pore co 56.5 1.5E+02 0.0032 26.5 11.1 20 109-128 114-133 (226)
347 TIGR02508 type_III_yscG type I 55.0 92 0.002 23.7 7.8 51 148-204 48-98 (115)
348 KOG0276 Vesicle coat complex C 54.9 1.9E+02 0.0041 29.8 11.2 149 152-340 599-747 (794)
349 PRK09687 putative lyase; Provi 53.8 1.9E+02 0.0041 26.9 27.1 234 136-428 34-277 (280)
350 PF14689 SPOB_a: Sensor_kinase 53.7 34 0.00075 23.2 4.4 22 249-270 28-49 (62)
351 COG0735 Fur Fe2+/Zn2+ uptake r 53.3 75 0.0016 26.1 7.2 45 249-293 25-69 (145)
352 PF09477 Type_III_YscG: Bacter 52.7 1.1E+02 0.0023 23.7 7.6 78 190-274 22-99 (116)
353 KOG4648 Uncharacterized conser 52.6 44 0.00096 31.5 6.2 50 148-199 106-156 (536)
354 PF11838 ERAP1_C: ERAP1-like C 52.0 2.1E+02 0.0046 26.9 18.6 118 179-303 134-261 (324)
355 KOG1550 Extracellular protein 51.4 3E+02 0.0065 28.6 22.7 149 155-309 228-394 (552)
356 KOG4077 Cytochrome c oxidase, 51.1 1.1E+02 0.0024 24.4 7.1 42 265-306 70-111 (149)
357 PRK10564 maltose regulon perip 50.9 33 0.00071 31.8 5.1 35 207-241 254-289 (303)
358 PRK10564 maltose regulon perip 50.0 33 0.00072 31.8 5.0 31 177-207 260-290 (303)
359 COG4455 ImpE Protein of avirul 49.4 1.9E+02 0.0041 25.7 11.7 75 247-322 4-80 (273)
360 PF14669 Asp_Glu_race_2: Putat 49.1 1.8E+02 0.0038 25.2 14.0 54 283-336 136-203 (233)
361 PHA03100 ankyrin repeat protei 47.3 1.3E+02 0.0029 30.3 9.7 104 213-328 36-152 (480)
362 PF10579 Rapsyn_N: Rapsyn N-te 47.2 67 0.0015 23.1 5.0 43 257-299 19-63 (80)
363 PF14689 SPOB_a: Sensor_kinase 47.0 66 0.0014 21.8 5.0 47 259-307 5-51 (62)
364 PF11846 DUF3366: Domain of un 46.7 1.1E+02 0.0023 26.5 7.7 31 241-271 141-171 (193)
365 PHA03100 ankyrin repeat protei 45.8 1.7E+02 0.0036 29.6 10.1 183 108-313 37-244 (480)
366 KOG2297 Predicted translation 45.8 2.6E+02 0.0056 26.2 11.2 60 96-162 158-219 (412)
367 PF10475 DUF2450: Protein of u 45.6 2E+02 0.0043 26.9 9.7 52 145-202 104-155 (291)
368 COG5108 RPO41 Mitochondrial DN 44.9 1.6E+02 0.0034 30.7 9.0 76 108-186 33-115 (1117)
369 KOG4567 GTPase-activating prot 44.3 2.5E+02 0.0054 26.4 9.4 87 194-289 263-359 (370)
370 PF10366 Vps39_1: Vacuolar sor 43.0 54 0.0012 25.3 4.6 28 454-481 40-67 (108)
371 PHA02989 ankyrin repeat protei 42.3 3.9E+02 0.0084 27.2 13.8 36 369-405 270-308 (494)
372 PF11768 DUF3312: Protein of u 42.2 3.4E+02 0.0074 27.8 10.9 124 177-309 411-537 (545)
373 COG4785 NlpI Lipoprotein NlpI, 41.8 2.5E+02 0.0055 24.9 15.6 165 135-309 94-267 (297)
374 cd00280 TRFH Telomeric Repeat 41.5 2.3E+02 0.005 24.4 10.8 40 216-258 118-157 (200)
375 PF06552 TOM20_plant: Plant sp 40.8 2.3E+02 0.0051 24.3 9.0 41 261-309 97-137 (186)
376 cd00280 TRFH Telomeric Repeat 40.5 2.1E+02 0.0045 24.7 7.7 64 225-291 85-155 (200)
377 PRK12356 glutaminase; Reviewed 40.5 2.4E+02 0.0052 26.7 9.1 52 286-337 196-254 (319)
378 PRK11639 zinc uptake transcrip 40.4 1.5E+02 0.0033 25.0 7.4 44 287-330 33-76 (169)
379 PRK08691 DNA polymerase III su 40.1 3E+02 0.0065 29.4 10.6 41 125-167 186-226 (709)
380 COG2976 Uncharacterized protei 39.8 2.6E+02 0.0055 24.4 13.4 87 147-238 97-188 (207)
381 smart00028 TPR Tetratricopepti 39.7 58 0.0013 16.9 3.6 21 179-199 6-26 (34)
382 PF07575 Nucleopor_Nup85: Nup8 39.3 91 0.002 32.5 7.0 29 138-166 404-432 (566)
383 cd08789 CARD_IPS-1_RIG-I Caspa 38.8 43 0.00093 24.5 3.3 45 459-508 38-82 (84)
384 KOG2034 Vacuolar sorting prote 38.6 5.6E+02 0.012 28.0 26.8 172 108-304 363-555 (911)
385 KOG1464 COP9 signalosome, subu 38.0 3.2E+02 0.007 25.1 17.0 206 204-410 21-259 (440)
386 PRK15180 Vi polysaccharide bio 37.2 4.5E+02 0.0097 26.4 15.3 121 114-239 300-421 (831)
387 PF09454 Vps23_core: Vps23 cor 37.1 69 0.0015 22.1 3.8 29 176-204 10-38 (65)
388 PF14669 Asp_Glu_race_2: Putat 37.0 2.8E+02 0.0061 24.1 13.6 55 249-303 137-205 (233)
389 PF11817 Foie-gras_1: Foie gra 36.8 1.9E+02 0.0042 26.2 8.0 58 213-270 182-244 (247)
390 KOG4567 GTPase-activating prot 36.4 2.7E+02 0.0058 26.2 8.4 71 368-443 263-343 (370)
391 PF09454 Vps23_core: Vps23 cor 35.9 97 0.0021 21.3 4.4 53 135-188 4-56 (65)
392 PF08424 NRDE-2: NRDE-2, neces 35.7 3.9E+02 0.0085 25.4 16.9 46 227-273 49-94 (321)
393 PF06552 TOM20_plant: Plant sp 35.6 2.9E+02 0.0062 23.7 9.3 62 365-429 52-124 (186)
394 PF09868 DUF2095: Uncharacteri 35.4 1.6E+02 0.0035 22.8 5.8 26 144-169 66-91 (128)
395 KOG1464 COP9 signalosome, subu 35.4 3.6E+02 0.0077 24.8 17.6 174 168-341 20-218 (440)
396 PF02847 MA3: MA3 domain; Int 35.4 1.2E+02 0.0026 23.2 5.7 63 248-312 6-70 (113)
397 PF11817 Foie-gras_1: Foie gra 35.3 2.5E+02 0.0054 25.5 8.4 56 249-304 183-243 (247)
398 KOG2062 26S proteasome regulat 34.7 6E+02 0.013 27.2 13.2 118 257-376 514-634 (929)
399 COG5187 RPN7 26S proteasome re 34.6 3.9E+02 0.0083 24.9 12.3 70 348-417 115-189 (412)
400 PF08424 NRDE-2: NRDE-2, neces 34.4 4.1E+02 0.0089 25.2 16.8 84 241-326 16-111 (321)
401 PF02847 MA3: MA3 domain; Int 34.3 1.9E+02 0.0042 22.1 6.7 17 183-199 11-27 (113)
402 PF12862 Apc5: Anaphase-promot 33.8 2E+02 0.0043 21.3 6.8 18 183-200 50-67 (94)
403 PF04097 Nic96: Nup93/Nic96; 33.2 6.1E+02 0.013 26.8 15.3 43 214-257 116-158 (613)
404 KOG0687 26S proteasome regulat 33.0 4.4E+02 0.0095 25.1 13.9 92 351-444 107-207 (393)
405 PF12862 Apc5: Anaphase-promot 32.7 2.1E+02 0.0045 21.2 6.8 54 254-307 8-69 (94)
406 cd08819 CARD_MDA5_2 Caspase ac 32.6 2E+02 0.0044 21.2 7.4 35 222-261 49-83 (88)
407 cd08819 CARD_MDA5_2 Caspase ac 32.6 2.1E+02 0.0044 21.2 7.8 35 257-296 49-83 (88)
408 COG0735 Fur Fe2+/Zn2+ uptake r 32.4 2.3E+02 0.0051 23.2 7.0 65 265-330 7-71 (145)
409 PF12968 DUF3856: Domain of Un 32.2 2.6E+02 0.0056 22.2 7.2 78 315-420 56-142 (144)
410 cd07153 Fur_like Ferric uptake 32.1 1.1E+02 0.0023 23.8 4.9 44 251-294 7-50 (116)
411 PF09670 Cas_Cas02710: CRISPR- 32.0 5E+02 0.011 25.4 12.3 55 148-203 140-198 (379)
412 PF10475 DUF2450: Protein of u 31.9 4.3E+02 0.0093 24.7 9.9 54 213-272 102-155 (291)
413 KOG4234 TPR repeat-containing 31.9 3.6E+02 0.0077 23.7 8.3 89 184-273 105-197 (271)
414 PRK15180 Vi polysaccharide bio 31.6 5.5E+02 0.012 25.8 11.7 127 221-351 301-428 (831)
415 smart00386 HAT HAT (Half-A-TPR 31.5 92 0.002 16.8 3.9 28 153-181 1-28 (33)
416 PRK14951 DNA polymerase III su 31.4 4.9E+02 0.011 27.5 10.6 32 209-241 251-282 (618)
417 KOG4648 Uncharacterized conser 31.3 1.7E+02 0.0038 27.7 6.5 54 181-236 104-158 (536)
418 PF13934 ELYS: Nuclear pore co 31.1 3.9E+02 0.0084 23.9 11.6 103 144-257 81-185 (226)
419 KOG3807 Predicted membrane pro 31.1 4.7E+02 0.01 24.9 9.9 119 155-286 232-354 (556)
420 PF09868 DUF2095: Uncharacteri 30.8 2E+02 0.0043 22.4 5.6 25 215-239 67-91 (128)
421 KOG1498 26S proteasome regulat 30.3 5.3E+02 0.011 25.2 12.6 184 116-307 25-240 (439)
422 PRK09462 fur ferric uptake reg 30.2 2.6E+02 0.0056 22.9 7.1 35 295-329 33-67 (148)
423 KOG4521 Nuclear pore complex, 30.1 8.7E+02 0.019 27.7 13.8 109 219-333 930-1073(1480)
424 PHA02798 ankyrin-like protein; 30.1 6E+02 0.013 25.8 12.6 243 159-408 51-313 (489)
425 PHA02878 ankyrin repeat protei 29.9 5.9E+02 0.013 25.7 13.2 232 159-417 50-294 (477)
426 PF04090 RNA_pol_I_TF: RNA pol 29.9 3.4E+02 0.0074 23.7 7.8 59 105-165 43-102 (199)
427 PF03745 DUF309: Domain of unk 29.8 1.8E+02 0.004 19.7 5.8 32 151-182 11-42 (62)
428 PF01475 FUR: Ferric uptake re 29.6 91 0.002 24.4 4.1 45 285-329 13-57 (120)
429 COG2976 Uncharacterized protei 29.6 3.8E+02 0.0083 23.4 14.5 89 216-309 96-189 (207)
430 PF10366 Vps39_1: Vacuolar sor 29.4 1.2E+02 0.0025 23.5 4.5 27 246-272 41-67 (108)
431 COG1466 HolA DNA polymerase II 29.3 4.5E+02 0.0097 25.1 9.5 79 197-277 150-241 (334)
432 COG4003 Uncharacterized protei 29.2 2.2E+02 0.0048 20.6 5.3 25 215-239 37-61 (98)
433 KOG2063 Vacuolar assembly/sort 28.9 8.3E+02 0.018 27.0 18.0 26 177-202 507-532 (877)
434 PHA02876 ankyrin repeat protei 28.9 6.3E+02 0.014 27.0 11.5 293 106-417 145-470 (682)
435 PRK14963 DNA polymerase III su 28.6 5.4E+02 0.012 26.4 10.3 32 210-242 243-274 (504)
436 PRK14958 DNA polymerase III su 28.5 6.6E+02 0.014 25.8 12.4 35 208-243 245-279 (509)
437 KOG4507 Uncharacterized conser 28.2 3.6E+02 0.0079 27.9 8.5 145 207-356 569-718 (886)
438 KOG4234 TPR repeat-containing 27.1 4.3E+02 0.0094 23.2 8.1 22 391-412 176-197 (271)
439 PF02184 HAT: HAT (Half-A-TPR) 27.1 97 0.0021 17.9 2.7 22 155-178 3-24 (32)
440 PRK06645 DNA polymerase III su 26.8 6.6E+02 0.014 25.8 10.5 35 208-243 257-291 (507)
441 KOG2396 HAT (Half-A-TPR) repea 26.6 6.9E+02 0.015 25.4 21.3 38 318-355 464-501 (568)
442 KOG1586 Protein required for f 26.3 4.9E+02 0.011 23.5 15.8 29 394-422 165-193 (288)
443 KOG2911 Uncharacterized conser 26.3 3.4E+02 0.0075 26.7 7.7 56 59-126 40-101 (439)
444 smart00638 LPD_N Lipoprotein N 26.2 7.6E+02 0.016 25.7 25.5 182 137-325 308-505 (574)
445 KOG2659 LisH motif-containing 25.9 4.8E+02 0.01 23.3 10.3 29 134-162 21-49 (228)
446 PF10345 Cohesin_load: Cohesin 25.8 8E+02 0.017 25.8 28.8 84 117-200 153-251 (608)
447 PRK12357 glutaminase; Reviewed 25.5 5.9E+02 0.013 24.2 9.4 23 314-336 236-258 (326)
448 PRK08691 DNA polymerase III su 25.5 8.6E+02 0.019 26.1 11.4 19 258-276 259-277 (709)
449 TIGR03581 EF_0839 conserved hy 25.4 1.8E+02 0.004 25.6 5.2 99 76-201 136-235 (236)
450 PF02607 B12-binding_2: B12 bi 25.4 1.5E+02 0.0033 20.9 4.3 36 186-221 13-48 (79)
451 COG2178 Predicted RNA-binding 25.2 4.6E+02 0.0099 22.8 9.3 74 191-273 20-98 (204)
452 cd07229 Pat_TGL3_like Triacylg 25.1 2.9E+02 0.0063 27.1 7.3 131 125-261 101-254 (391)
453 PRK11639 zinc uptake transcrip 24.9 3.7E+02 0.008 22.7 7.2 65 232-297 14-78 (169)
454 PF10345 Cohesin_load: Cohesin 24.8 8.4E+02 0.018 25.7 33.1 194 103-306 30-252 (608)
455 COG2137 OraA Uncharacterized p 24.6 4.4E+02 0.0096 22.4 11.1 97 228-328 54-151 (174)
456 COG4003 Uncharacterized protei 24.5 2.8E+02 0.006 20.1 5.4 25 145-169 37-61 (98)
457 PRK14956 DNA polymerase III su 24.1 7.7E+02 0.017 25.1 12.0 90 167-280 195-284 (484)
458 PF14853 Fis1_TPR_C: Fis1 C-te 23.9 2.1E+02 0.0046 18.7 4.3 26 147-174 9-34 (53)
459 PRK09857 putative transposase; 23.9 6E+02 0.013 23.8 10.5 64 213-277 210-273 (292)
460 KOG2297 Predicted translation 23.9 6.2E+02 0.013 23.9 17.6 8 193-200 186-193 (412)
461 PF08870 DUF1832: Domain of un 23.5 1.6E+02 0.0035 23.0 4.3 35 188-223 62-96 (113)
462 KOG1498 26S proteasome regulat 23.4 7.1E+02 0.015 24.4 15.7 99 179-284 136-253 (439)
463 PRK12357 glutaminase; Reviewed 23.3 6.5E+02 0.014 23.9 10.4 67 133-214 96-168 (326)
464 KOG0292 Vesicle coat complex C 23.0 5.1E+02 0.011 28.4 8.7 147 74-269 606-752 (1202)
465 PF12926 MOZART2: Mitotic-spin 22.7 3.2E+02 0.0069 20.1 8.0 42 195-236 29-70 (88)
466 cd08812 CARD_RIG-I_like Caspas 22.5 1.1E+02 0.0024 22.5 3.1 43 464-509 45-87 (88)
467 PRK07003 DNA polymerase III su 22.2 1.1E+03 0.023 25.9 15.1 81 123-206 184-277 (830)
468 PRK13342 recombination factor 22.0 7.8E+02 0.017 24.4 17.5 168 259-444 152-331 (413)
469 PF07443 HARP: HepA-related pr 21.9 75 0.0016 21.0 1.8 32 467-498 6-37 (55)
470 COG4715 Uncharacterized conser 21.9 8.9E+02 0.019 25.0 19.0 215 63-307 305-526 (587)
471 KOG2034 Vacuolar sorting prote 21.5 1.1E+03 0.024 25.9 18.6 53 213-271 362-416 (911)
472 PLN03192 Voltage-dependent pot 20.9 7E+02 0.015 27.5 10.2 9 373-381 640-648 (823)
473 cd07153 Fur_like Ferric uptake 20.9 2.5E+02 0.0053 21.6 5.1 10 193-202 19-28 (116)
474 COG0819 TenA Putative transcri 20.6 6.1E+02 0.013 22.6 8.9 14 278-291 154-167 (218)
475 PRK14958 DNA polymerase III su 20.4 9.4E+02 0.02 24.7 12.4 75 201-278 192-279 (509)
476 PRK14951 DNA polymerase III su 20.2 1E+03 0.023 25.1 11.5 75 201-278 197-284 (618)
477 PF02607 B12-binding_2: B12 bi 20.1 1.7E+02 0.0037 20.7 3.7 30 257-286 14-43 (79)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-68 Score=564.87 Aligned_cols=463 Identities=14% Similarity=0.138 Sum_probs=393.5
Q ss_pred cchHHHHHHhhhccccccccCCCccccccchh----------hhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCC
Q 010459 31 HDRVFFAKTLIRKPISCCCLSSAPSLDYHSTK----------HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGD 100 (510)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (510)
+++......+++.+.++|.+.++..+ |+.|. .++.++.+|.+.+.+.++++.+. .|. .
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~L-fd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-------~M~----~ 434 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDL-LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-------LIR----N 434 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-------HcC----C
Confidence 34456666778888888888888877 65552 23456667888888888887665 332 3
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
||..+|+.+|++|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+|++|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 8888999999999999999999999998887 888899999999999999999999999999999988888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcC
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL--DGCSPDHITYNLLIQEFACAG 258 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g 258 (510)
|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.. .|+.||.++|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999998889999999999999999999999999999999876 578889999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338 (510)
Q Consensus 259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 338 (510)
++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.|++++|.+++.
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999998898899999999999999999999999999999988999999999999999999999999998888
Q ss_pred HHHhhc-CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC
Q 010459 339 DLASRI-GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417 (510)
Q Consensus 339 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (510)
.+.... .++..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 887554 5778889999999999999999999999998888889999999999999999999999999999988889999
Q ss_pred HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh----ccC-------------------chhHHHH
Q 010459 418 IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG----KGH-------------------FLRYCEE 474 (510)
Q Consensus 418 ~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~ 474 (510)
..||++++.+|++.|++++|.+++++|...+..|+..++++++++|. +++ ..+.|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999988888888888888887643 222 2356888
Q ss_pred HHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459 475 VYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506 (510)
Q Consensus 475 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 506 (510)
+|++|.+.|+.||..||+.+|.++++.+..++
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence 88999988999999999988877766665543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-68 Score=559.49 Aligned_cols=472 Identities=16% Similarity=0.109 Sum_probs=441.6
Q ss_pred eeccccccccCcchHHHHHHhhhccccccccCCCccccc-----cchhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhh
Q 010459 20 RLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDY-----HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQI 94 (510)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (510)
++....+.+..++.....+.+++.+.+.|....+..+ | ++..+|+.++.+|++.+.++.+++.+. .|
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l-f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~-------~M 463 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF-AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR-------LV 463 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH-HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH-------HH
Confidence 3344455555667777778888888888887777654 4 455789999999999999999999998 99
Q ss_pred hhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459 95 LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174 (510)
Q Consensus 95 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 174 (510)
.+.|..||..+|+++|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKE--MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
.+||.||.+|++.|++++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 332 (510)
+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.|+..+|++||.+|+++|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-cCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 333 LDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 333 a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
|.+++..+... ..++..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988744 57889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhh----c-------------------CccchHHHHHHHcCCccccccccChhHHHHHhhccCc
Q 010459 412 RHVKPDIVTIGILYDARRI----G-------------------FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF 468 (510)
Q Consensus 412 ~g~~p~~~t~~~li~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 468 (510)
.|+.||..+|++++..|.+ . +..++|+.+|++|...+..|+..+|+.++..+.+.+.
T Consensus 783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 9999999999999976542 1 1236799999999999999999999999988889999
Q ss_pred hhHHHHHHhhcCCCCCCCCcccHHHHHHHHHh
Q 010459 469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500 (510)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 500 (510)
.+.+.++++.|...+..|+..+|++||+++.+
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999999998999999999999999854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-68 Score=570.96 Aligned_cols=459 Identities=16% Similarity=0.122 Sum_probs=364.9
Q ss_pred cCcchHHHHHHhhhccccccccCCCccccccch-----hhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCCh
Q 010459 29 LTHDRVFFAKTLIRKPISCCCLSSAPSLDYHST-----KHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTK 103 (510)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (510)
...+.+.+.|+||++|.+||....+..+ |+.| ++||.+|.+|++.|.++++++.|. .|...|..||.
T Consensus 116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~-f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~-------~M~~~g~~Pd~ 187 (857)
T PLN03077 116 HPSLGVRLGNAMLSMFVRFGELVHAWYV-FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH-------RMLWAGVRPDV 187 (857)
T ss_pred CCCCCchHHHHHHHHHHhCCChHHHHHH-HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHH-------HHHHcCCCCCh
Confidence 3456778899999999999999999887 7555 679999999999999999999888 55555555555
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-------------------------------CHHHHHHHHHHHHhc
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-------------------------------NEFNSQKIIGMLCEE 152 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~~li~~~~~~ 152 (510)
.||+++|++|++.++++.+.+++..|.+ .|+.| |..+||++|.+|++.
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC
Confidence 5555555544444444444444444444 44444 555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010459 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL 232 (510)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 232 (510)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555555555555555666666666666666666666666666666666666677777788888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 010459 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312 (510)
Q Consensus 233 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 312 (510)
++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 8887 688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcC----------
Q 010459 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN---------- 382 (510)
Q Consensus 313 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---------- 382 (510)
+..++++||++|+++|++++|.+++..+ ..++.++|+++|.+|...|+.++|.++|++|.. ++.||
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNI---PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 9999999999999999999999997655 567899999999999999999999999999975 35554
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCChhHHHHHHH
Q 010459 383 -------------------------------------------------------VTTANIILLAYLKMKDFKHLRVLLS 407 (510)
Q Consensus 383 -------------------------------------------------------~~~~~~li~~~~~~g~~~~A~~~~~ 407 (510)
..+||+||.+|++.|+.++|.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 4557777777888888888888888
Q ss_pred hhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcC-CccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCC
Q 010459 408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG-FLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREK 486 (510)
Q Consensus 408 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (510)
+|.+.|+.||..||++++.+|++.|.+++|.++|++|. ..+..|+..+|++++++|++.|++++|.+++++|. ++|
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p 655 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP 655 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC
Confidence 88888888888888888888888888888888888886 66777888888888888888888888888888885 678
Q ss_pred CcccHHHHHHHHHhcCCCCCC
Q 010459 487 KRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a 507 (510)
|..+|++|+.+|..+|+.+++
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHH
Confidence 888888888888888877654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.3e-67 Score=561.15 Aligned_cols=460 Identities=15% Similarity=0.075 Sum_probs=401.8
Q ss_pred cccccCcchHHHHHHhhhccccccccCCCccccccch-----hhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccC
Q 010459 25 KKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHST-----KHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDG 99 (510)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (510)
+.+.+..+.++..|+||++|.+||....|..+ |+.| ++||++|.+|++.|.+.+++..|. .|...|.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l-f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~-------~M~~~g~ 284 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLV-FDRMPRRDCISWNAMISGYFENGECLEGLELFF-------TMRELSV 284 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHH-HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH-------HHHHcCC
Confidence 34446677888999999999999999999887 7544 689999999999999999999999 8999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS 179 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 179 (510)
.||..||+++|.+|++.|+.+.|.+++..|.+ .|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 99999999999999999999999999999988 8999999999999999999999999999999987 688888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------------
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP----------------- 242 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------------- 242 (510)
||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.|.+.|+.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 999999999999999999988888888887777666666555555555555555555555544
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 243 --------------DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 243 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
|.++||++|.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.+++..+.+.
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 445555555555555555555566666654 58899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388 (510)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 388 (510)
|+.+|..++++||++|+++|++++|.+++..+ .++..+||++|.+|+.+|+.++|.++|++|.+.|+.||..||++
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999999999999999997665 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccC
Q 010459 389 ILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467 (510)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 467 (510)
+|.+|++.|++++|.++|++|. +.|+.|+..||+++++++++.|++++|.+++++|. ..|+..+|++++.+|..+|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999 78999999999999999999999999999999995 4588999999999999999
Q ss_pred chhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcCCCCCC
Q 010459 468 FLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 507 (510)
+.+.++.+.+++.+ ++|+ ...|..|.+.|+..|+|+.|
T Consensus 672 ~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 672 HVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred ChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999988887 4555 45677788999999999865
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-65 Score=536.91 Aligned_cols=424 Identities=14% Similarity=0.128 Sum_probs=389.3
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhcc-CCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH
Q 010459 61 TKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHD-GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE 139 (510)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (510)
..+|+.+|.+|.+.|++.++++.|. .|...+ ..||..+|++++.+|++.++++.|.+++..|.+ .|+.||.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~-------~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~ 158 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFE-------ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQ 158 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHH-------HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcch
Confidence 3478999999999999999999887 565543 568888999999999999999999999998887 7888999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD--------- 210 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------- 210 (510)
.+||.||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 999999999999999999999999997 6889999999999999999999999999987777666554
Q ss_pred --------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 211 --------------------------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 211 --------------------------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
+||+||++|+++|++++|.++|++|. ++|.++||+||.+|++.|++++|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHH
Confidence 45788999999999999999999998 789999999999999999999999
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
++|++|.+.|+.||..||++++++|++.|++++|.++|..|.+.|+.||..++++|+++|+++|++++|.++|..+ .
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---~ 387 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM---P 387 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997665 4
Q ss_pred CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh-CCCCCCHHHHHH
Q 010459 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT-RHVKPDIVTIGI 423 (510)
Q Consensus 345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ 423 (510)
.++..+||+||.+|+++|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 5799999999999999999999999999999999999999999999999999999999999999985 799999999999
Q ss_pred HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcC
Q 010459 424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHN 502 (510)
Q Consensus 424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 502 (510)
+++++++.|++++|.+++++|.. .|+..+|+.++.+|.+.|+++.|+++++++.+ ..|+ ..+|+.|++.|++.|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~---~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence 99999999999999999999854 48888999999999999999999999999976 5664 679999999999999
Q ss_pred CCCCCC
Q 010459 503 GKNLDG 508 (510)
Q Consensus 503 ~~~~a~ 508 (510)
+++.|.
T Consensus 543 ~~~~A~ 548 (697)
T PLN03081 543 RQAEAA 548 (697)
T ss_pred CHHHHH
Confidence 998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-59 Score=488.09 Aligned_cols=443 Identities=11% Similarity=0.067 Sum_probs=394.2
Q ss_pred eeccccccccCcchHHHHHHhhhccccccccCCCcccc--------ccchhhhhHHHHHhhhhhHHHHHHHHHcccCCCc
Q 010459 20 RLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLD--------YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCP 91 (510)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (510)
++..+.......+..+..+.+++.+.+.+....+..+. .++..+|+.+++.|++.|.++.+.+.|++
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~----- 183 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE----- 183 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc-----
Confidence 33444444445567777788999988887776554330 14556789999999999999999988873
Q ss_pred hhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010459 92 LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK 171 (510)
Q Consensus 92 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 171 (510)
| ..||..+||++|.+|++.|++++|.++|+.|.+ .|..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 184 --m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 184 --M----PERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred --C----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 3 357889999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 251 (510)
||..+||+||++|++.|++++|.++|++|. .+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 4688999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchh
Q 010459 252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS 331 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 331 (510)
.+|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999885 378899999999999999999
Q ss_pred HHHHHHHHHHh-hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH-CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459 332 RLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-AKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409 (510)
Q Consensus 332 ~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (510)
+|.++++++.. ...++..+|++++.+|...|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 99999998874 4578899999999999999999999999999986 699999999999999999999999999999877
Q ss_pred hhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCC
Q 010459 410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREK 486 (510)
Q Consensus 410 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (510)
++.|+..+|++|+.+|...|+.+.|.+.++++.... +.+...|..++++|++.|++++|.++++.|.+.|+.+
T Consensus 489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 478999999999999999999999999999885432 2356789999999999999999999999999988753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.5e-24 Score=232.73 Aligned_cols=391 Identities=12% Similarity=0.001 Sum_probs=249.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.+..+...+...|++++|.+.++.+.. ..+.+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...|
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 444455555555555555555555543 223344555555556666666666666666555443 23445555566666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
.+.|++++|.++++.+.+.. ..+..+|..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665432 2345566666666666666666666666665543 234555666666666666666666
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
..|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...+.......
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666665542 2245566666666666666666666666666554 3455556666666667777777777666665544
Q ss_pred CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHH
Q 010459 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424 (510)
Q Consensus 345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 424 (510)
+.+ .++..+...+...|+.++|.+.++++.+..+. +...++.+...|.+.|++++|.++|+++.+.. .++...+..+
T Consensus 734 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 433 55555666677777777777777776665433 66777777777777888888888888877643 3455667777
Q ss_pred HHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCC
Q 010459 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK 504 (510)
Q Consensus 425 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 504 (510)
...+...|+ .+|++.++++.... +.+...+..+...|.+.|++++|.+.++++.+.+.. +..++..+..++.+.|+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 777777777 77888877764332 123334556677788899999999999999985433 778999999999999998
Q ss_pred CCCC
Q 010459 505 NLDG 508 (510)
Q Consensus 505 ~~a~ 508 (510)
+.|.
T Consensus 888 ~~A~ 891 (899)
T TIGR02917 888 AEAR 891 (899)
T ss_pred HHHH
Confidence 8763
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=9.9e-24 Score=230.71 Aligned_cols=384 Identities=11% Similarity=0.007 Sum_probs=252.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 187 (510)
.++..+.+.|++++|.++++.+.. ..+++..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence 344445555555555555555542 334455566666666666666666666666665543 22445566666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
|++++|.+.|+++.+.+. .+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...|.+.|++++|.+++
T Consensus 513 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655432 255566666666666677777777776665543 345556666677777777777777777
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
+.+.... +.+..+|..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...+.......+.+
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7766543 3355667777777777777777777777776543 3345566677777777777777777777777766777
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 427 (510)
..+|..+...+...|+.++|.++++.+.+..+. +...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHH
Confidence 777777777777777777777777777766533 5566677777777777788887777777764 3555666667777
Q ss_pred hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG 503 (510)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 503 (510)
+.+.|+.++|.+.++++... .+.+...+..+...|.+.|+.++|.+.|+++.+. .+++...++.+...+...|+
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc
Confidence 77777888887777776433 2234445566667777888888888888887764 23455677777777777776
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5.1e-20 Score=181.54 Aligned_cols=310 Identities=11% Similarity=0.013 Sum_probs=177.2
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGK 189 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 189 (510)
+...|++++|.+.|..+.+ ..+.+..++..+...|.+.|++++|..+++.+.+.+..++ ...|..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455666666666666653 1223344566666666666666666666666655321111 2345566666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFACAGLLKRMEG 265 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 265 (510)
+++|.++|+++.+.. .++..+++.++..|.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 23455666666666666666666666666655432211 1123445555566666666666
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345 (510)
Q Consensus 266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------------------------- 251 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV----------------------------- 251 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH-----------------------------
Confidence 666665442 11334555555666666666666666666654321111223
Q ss_pred CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425 (510)
Q Consensus 346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 425 (510)
++.++.+|...|+.++|.+.++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..++..++
T Consensus 252 -----~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 252 -----LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 3444444555555566666666666653 44455567777777888888888888777754 57777777777
Q ss_pred Hhhhh---cCccchHHHHHHHcCCccccccccChhHHHHHhhccCchh
Q 010459 426 DARRI---GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR 470 (510)
Q Consensus 426 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 470 (510)
..+.. .|+.++++..++++......++.. ..|.+||...
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA 364 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence 65443 446777777777775544444443 2366666554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.9e-20 Score=179.80 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=224.4
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 178 (510)
+..++..+...+...|++++|.++++.+.. .+..++ ...+..+...|.+.|++++|..+|+++.+.. +++..+++
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 456788899999999999999999999876 322221 3568889999999999999999999998753 45788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 9999999999999999999999887644332 245677888899999999999999998764 34567888889999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (510)
.+.|++++|.++|+++.+.+......++..+..+|...|++++|.+.++.+.+.. |+...+..+...+.+.|++++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~-- 300 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEA-- 300 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHH--
Confidence 9999999999999999976433335678899999999999999999999998764 555556667777777666654
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc---CCChhHHHHHHHhhhh
Q 010459 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK---MKDFKHLRVLLSELPT 411 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 411 (510)
|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+
T Consensus 301 --------------------------------A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 301 --------------------------------AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --------------------------------HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 45556666554 5788888888887664 5688899999999998
Q ss_pred CCCCCCHH
Q 010459 412 RHVKPDIV 419 (510)
Q Consensus 412 ~g~~p~~~ 419 (510)
.++.|++.
T Consensus 347 ~~~~~~p~ 354 (389)
T PRK11788 347 EQLKRKPR 354 (389)
T ss_pred HHHhCCCC
Confidence 88888777
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=9.2e-17 Score=166.58 Aligned_cols=331 Identities=6% Similarity=-0.119 Sum_probs=268.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
--++..+.+.|++++|..+++.... ..+-+...+..+.......|++++|...|+++.+.. +.+...|..+...+.+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3567788899999999999998875 333344455556677778999999999999999874 3356788899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 266 (510)
.|++++|.+.|++..+... .+...+..+...+...|+.++|...++.+..... .+...+..+ ..+.+.|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999988532 2567888899999999999999999998876542 233344333 348889999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH----HHHHHHHHHh
Q 010459 267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR----LDDLGDDLAS 342 (510)
Q Consensus 267 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 342 (510)
++.+.+....++...+..+..++...|++++|.+.++...+.. +.+...+..+...|...|++++ |...++....
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876544455556666788899999999999999998765 4467788889999999999986 7888888888
Q ss_pred hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHH-
Q 010459 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI- 421 (510)
Q Consensus 343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~- 421 (510)
..+.+...+..+...+...|+.++|...+++..+..+. +...+..+..+|.+.|++++|...|+.+.+. .|+...+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 88889999999999999999999999999999987554 5667778888999999999999999999864 4665443
Q ss_pred HHHHHhhhhcCccchHHHHHHHcCCc
Q 010459 422 GILYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 422 ~~li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
..+..++...|+.++|++.+++....
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33445688899999999999987443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=7.6e-16 Score=159.77 Aligned_cols=331 Identities=9% Similarity=-0.022 Sum_probs=264.9
Q ss_pred HHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH
Q 010459 66 LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145 (510)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (510)
.++-...+.|+..+++..+. ..+...+.... .+..+..++...|++++|.+.++.+.. -.+.+...+..+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~-------~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~~a~~~l 116 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLS-------DRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLA--VNVCQPEDVLLV 116 (656)
T ss_pred HHHHHHHhcCCcchhHHHhH-------HHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 45566677778777777776 44444444433 344555666779999999999999975 334456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 225 (510)
...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.++.+......+ ...+..+ ..+.+.|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCH
Confidence 999999999999999999998763 3357889999999999999999999999987754332 3333333 347889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH----HHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKF 301 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~ 301 (510)
++|...++.+.+....++...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999999876643344555566678899999999999999999976532 56788889999999999986 8999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 381 (510)
++...+.. +.+...+..+...+.+.|++++|...++......+.+...+..+...+...|+.++|.+.|+++.+....
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 99998764 4467788999999999999999999999999988889999999999999999999999999999886433
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhC
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTR 412 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (510)
+...+..+..++...|+.++|...|++..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2233444567889999999999999998754
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.1e-15 Score=158.88 Aligned_cols=365 Identities=10% Similarity=-0.021 Sum_probs=264.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 185 (510)
+...-..+.+.|++++|.+.|+.... ..|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+-.+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34556678889999999999998764 46788889999999999999999999999998764 235678999999999
Q ss_pred hcCChHHHHHHHHHHHHCC-C---------------------------CC----CHHHHHHH------------------
Q 010459 186 KIGKFNEALLFLNEMKEMN-L---------------------------SP----QSDTYDGL------------------ 215 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g-~---------------------------~p----~~~t~~~l------------------ 215 (510)
..|++++|+.-|......+ . .| ........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987665443211 0 00 00000000
Q ss_pred ---------HHHH------HccCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 010459 216 ---------IQAY------GKYKMYDEIDMCLKMMKLDG-C-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278 (510)
Q Consensus 216 ---------i~~~------~~~g~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 278 (510)
+..+ ...+++++|.+.|+...+.+ . +.+...|+.+...+...|++++|+..|++..+.. |+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Confidence 0000 11246778888888887654 1 2345567777778888888999998888887653 33
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459 279 -SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357 (510)
Q Consensus 279 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 357 (510)
..+|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...+.......+.+...|..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 5577778888888888999998888887654 34567788888888888888888888888888888888888888888
Q ss_pred hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH--H------HHHHHHHhhh
Q 010459 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI--V------TIGILYDARR 429 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~------t~~~li~~~~ 429 (510)
+...|+.++|+..|++..+..+. +...|+.+...+...|++++|.+.|++..+.. |+. . .++.....+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHH
Confidence 88888888888888888765432 56778888888888889999988888877532 221 1 1111112233
Q ss_pred hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
..|++++|.+++++...... .+...+..+...+.+.|++++|.+.|++..+
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45788888888887644321 2223456667788888888888888887765
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=2e-15 Score=167.18 Aligned_cols=367 Identities=10% Similarity=-0.012 Sum_probs=217.0
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK------------IIGMLCEEGLMEEAVRAFQEMEGFA 169 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g 169 (510)
++..+..+...+.+.|++++|.+.|+...+.....++...|.. +-..+.+.|++++|+..|++..+..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4566777777778888888888888776652222222222221 2335567788888888888877663
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--------
Q 010459 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-------- 241 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------- 241 (510)
+.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|. .++.++|...++.+......
T Consensus 382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 235566777777788888888888888877764321 3344444444442 23344444444333211000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH---
Q 010459 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR--- 318 (510)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--- 318 (510)
.....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 00112223334455556666666666665544221 33444555556666666666666666655432 11222221
Q ss_pred -----------------------------------------HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459 319 -----------------------------------------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357 (510)
Q Consensus 319 -----------------------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 357 (510)
.+...+...|++++|..++. ..+.+...+..+...
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHH
Confidence 22334455566666655543 334455666777778
Q ss_pred hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccch
Q 010459 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTG 436 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~ 436 (510)
+...|+.++|++.|++..+..+. +...+..+...|...|+.++|.+.++...+. .|+ ...+..+-.++...|+.++
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHH
Confidence 88888888888888888876544 6778888888888888888888888877653 343 3444555556777888888
Q ss_pred HHHHHHHcCCccccccc-----cChhHHHHHhhccCchhHHHHHHhhcC
Q 010459 437 ALEMWKRIGFLFKTVEI-----NTDPLVLAVYGKGHFLRYCEEVYSSLE 480 (510)
Q Consensus 437 a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (510)
|.++++++......... ..+..+...+.+.|+.++|.+.|++..
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887443221111 122223456777888888888887664
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=3.3e-15 Score=165.47 Aligned_cols=421 Identities=12% Similarity=0.004 Sum_probs=242.0
Q ss_pred HhhhhhHHHHHHHHHcccCCCchhhhhccCCCChh-hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 010459 70 SYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKD-HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM 148 (510)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 148 (510)
.+...|.+++++..+. ..+... +|+.. ............|+.++|.+.++.+.+ ..+-+...+..+...
T Consensus 121 ll~~~g~~~eA~~~~~-------~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 121 LLATTGRTEEALASYD-------KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALL 190 (1157)
T ss_pred HHHhCCCHHHHHHHHH-------HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3566778888888777 333322 22221 111111112245778888888888774 234455667777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC------------------CCC-HHHHH-------------------------------
Q 010459 149 LCEEGLMEEAVRAFQEMEGFAL------------------KPS-LEIYN------------------------------- 178 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~------------------~~~-~~~~~------------------------------- 178 (510)
+...|+.++|+..|+++.+... .+. ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 8888888888888887754210 000 00000
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHH----
Q 010459 179 ---SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLL---- 250 (510)
Q Consensus 179 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l---- 250 (510)
.....+...|++++|+..|++..+.... +..++..|...|.+.|++++|...|++..+.... ++...|..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1123455678888888888888775422 6777888888888888888888888887765321 111222222
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH--
Q 010459 251 --------IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-- 320 (510)
Q Consensus 251 --------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-- 320 (510)
-..+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2346677888888888888876632 245666777788888888888888888877643 1222222222
Q ss_pred ----------------------------------------HHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Q 010459 321 ----------------------------------------AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC 360 (510)
Q Consensus 321 ----------------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 360 (510)
...+...|++++|...++......+.+...+..+...|..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2334456777777777777777777777777777777777
Q ss_pred hcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCC-------------------------
Q 010459 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK------------------------- 415 (510)
Q Consensus 361 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------- 415 (510)
.|+.++|...++++.+.... +...+..+...+.+.|+.++|+..++.+......
T Consensus 508 ~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 78888888887777664332 3333333333344455555555555544321111
Q ss_pred --------------CCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 416 --------------PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 416 --------------p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
++...+..+-..+.+.|+.++|++.+++..... +.+...+..+...|...|+.++|++.++...+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 122223333334455555555555555553321 12233344445555566666666666665554
Q ss_pred CCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459 482 YSREKKR-WTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 482 ~g~~p~~-~~~~~li~~~~~~g~~~~a 507 (510)
..|+. ..+..+..++.+.|+.+.|
T Consensus 666 --~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 666 --TANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred --cCCCChHHHHHHHHHHHhCCCHHHH
Confidence 22221 2334445555555555443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=4.7e-15 Score=154.23 Aligned_cols=357 Identities=8% Similarity=-0.037 Sum_probs=276.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
+...-..|.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.... +..+|..+-.+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445667888999999999999998875 678889999999999999999999999999886422 56788889999999
Q ss_pred cCCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHH----------------------
Q 010459 222 YKMYDEIDMCLKMMKLDGC-----------------------------SPDHITYNLL---------------------- 250 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~-----------------------------~~~~~~~~~l---------------------- 250 (510)
.|++++|..-|......+- +++...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654322110 0111111110
Q ss_pred --------HHHH------HHcCCHHHHHHHHHHHHHCC-Ccc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 010459 251 --------IQEF------ACAGLLKRMEGTYKSMLTKR-MHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314 (510)
Q Consensus 251 --------i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 314 (510)
+..+ ...+++++|.+.|+.....+ ..| +...+..+...+...|++++|...++..++.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0000 11257889999999988765 334 34567778888889999999999999998764 2345
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010459 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL 394 (510)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 394 (510)
..+..+...+...|++++|...+.......+.+...|..+...+...|+.++|...|++..+..+. +...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 678888899999999999999999998888889999999999999999999999999999987544 6777888888999
Q ss_pred cCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChh------HHHHHhhccC
Q 010459 395 KMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP------LVLAVYGKGH 467 (510)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~li~~~~~~g 467 (510)
+.|++++|+..|++..+. .|+ ...+..+-..+...|++++|++.+++.............+ .....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999998863 454 5778888888999999999999999874443221111111 1122334469
Q ss_pred chhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459 468 FLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a 507 (510)
++++|.+++++..+ +.|+. ..+..+...+.+.|+.+.|
T Consensus 523 ~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 523 DFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred hHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999998776 34544 4688899999999998766
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.4e-14 Score=132.33 Aligned_cols=379 Identities=9% Similarity=0.004 Sum_probs=255.1
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--h---------------------------cCCH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC--E---------------------------EGLM 155 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~---------------------------~g~~ 155 (510)
+=|.+++. ...|.++++.-+|+.|++ .++..+..+--.|+..-+ . .|++
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 44555553 355777888888888877 777766665544443211 1 2222
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235 (510)
Q Consensus 156 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 235 (510)
.+ -+|+.. +.+..||..||.|+|+-...++|.+++++-.+...+.+..+||.+|.+-+-.. ..++..+|
T Consensus 196 Ad--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred HH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 22 222222 45778999999999999999999999999988888889999999987654332 37888999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh---
Q 010459 236 KLDGCSPDHITYNLLIQEFACAGLLKR----MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLN--- 307 (510)
Q Consensus 236 ~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~--- 307 (510)
.+..+.||..|+|+++++.++.|+++. |++++.+|++.|+.|...+|..+|.-+++.++..+ +..+..++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 998899999999999999999998765 46778889999999999999999999998888754 4444444432
Q ss_pred -cCCCC----CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC-----c---hHHHHHHHHHhhhhcccccHHHHHHHH
Q 010459 308 -SRTPL----KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR-----T---ELVWCLRLLSHACLLSHRGIDSVVREM 374 (510)
Q Consensus 308 -~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~li~~~~~~~~~~~a~~~~~~m 374 (510)
..+.| |...|..-+..|.+..+.+.|.++..-+...... + ..-|..+....+.....+.-...++.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 3345566777777777777777776555533221 1 222333455556666677788889999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcC-cc--------ch-----HHHH
Q 010459 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF-DG--------TG-----ALEM 440 (510)
Q Consensus 375 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~--------~~-----a~~~ 440 (510)
...-+-|+..+..-++.|..-.|+++-.-+++..|+..|-.-+...-.-++..+++.. .. .. |..+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9888889999999999999999999999999999988774333333333333333222 11 00 1111
Q ss_pred HHHc-----CCccccccccChhHHHHHhhccCchhHHHHHHhhcCC-CCCCCCcccHHHHHH
Q 010459 441 WKRI-----GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP-YSREKKRWTYQNLID 496 (510)
Q Consensus 441 ~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~ 496 (510)
++.. ............+.+.-.+.|.|+.++|.+++..+.. ...-|..-..|+|+.
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 1111 0111222333455566678899999999999998854 334455555565544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=8.7e-14 Score=147.56 Aligned_cols=371 Identities=12% Similarity=0.004 Sum_probs=224.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.+..+...+...|++++|.++|+...+ ..+.+...+..+...+.+.|++++|+..+++..+.. +.+.. |..+...+
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l 126 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence 466666667777777777777776653 223345555666666777777777777777766552 22344 66666667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH---
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH------ITYNLLIQEFA--- 255 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~--- 255 (510)
...|+.++|+..+++..+.... +...+..+...+.+.+..++|.+.++.... .|+. .....++..+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc
Confidence 7777777777777777664322 344445566666666677777766665543 2221 01111122111
Q ss_pred --HcCCH---HHHHHHHHHHHHC-CCccCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 010459 256 --CAGLL---KRMEGTYKSMLTK-RMHLRSS-TM----VAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEV 323 (510)
Q Consensus 256 --~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~ 323 (510)
..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+-. |+. ....+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 11223 5677777777643 2222221 11 11133455668888888888888776522 221 22234667
Q ss_pred HHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHHHHHHHHCCC-----------CcC---HHH
Q 010459 324 YIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSVVREMESAKV-----------RWN---VTT 385 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~ 385 (510)
|...|++++|...++.+....+.+ ......+..++...|+.++|.++++.+.+..+ .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 888888888888877766544333 23455566677788888888888888776532 123 123
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh
Q 010459 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG 464 (510)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 464 (510)
+..+...+...|+.++|+++++++... .|+ ...+..+...+...|++++|++.+++..... |.+...+-.....+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Confidence 455666777888888888888888753 343 4556666667778888888888888774432 222333444455677
Q ss_pred ccCchhHHHHHHhhcCCCCCCCCcc
Q 010459 465 KGHFLRYCEEVYSSLEPYSREKKRW 489 (510)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (510)
+.|++++|+++++++.+ ..|+..
T Consensus 439 ~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HhCCHHHHHHHHHHHHH--hCCCCH
Confidence 78888888888888876 455543
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=7.5e-15 Score=139.89 Aligned_cols=363 Identities=14% Similarity=0.085 Sum_probs=271.9
Q ss_pred hhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHH
Q 010459 64 TTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ 143 (510)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (510)
|.-+-+.+...|.+.+++..+. .+++..+ -..+.|-.+..++...|+.+.|.+.|....+ +.|+.....
T Consensus 119 ysn~aN~~kerg~~~~al~~y~-------~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~ 187 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYR-------AAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR 187 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHH-------HHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence 4445555566666777776665 3322211 1234666777777788888888887776643 456665554
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 010459 144 KIIGMLCE-EGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYG 220 (510)
Q Consensus 144 ~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~ 220 (510)
+-+.-+.| .|++.+|...+-+..+. .|. .+.|+.|-..+-..|+..+|+.-|++.+.. .|+ ...|-.|-..|.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 44444433 57788887777776654 343 467888888888888888888888888764 343 347777888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 299 (510)
..+.++.|...+.+..... +-..+.+..|...|-..|++|.|+..|++..+. .|+ ...|+.|..++-..|++.+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence 8888888888888776553 235677777888888899999999999988865 343 568999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCC
Q 010459 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379 (510)
Q Consensus 300 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 379 (510)
+.+....... +--....+.|...|...|.+++|.+++.......+.-...++.+...|-+.|+.++|+..+++..+.
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence 9998887654 2335567888899999999999999988888888888888999999999999999999999988875
Q ss_pred CcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcCCccc
Q 010459 380 RWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIGFLFK 449 (510)
Q Consensus 380 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 449 (510)
.|+ ...|+.+-..|-..|+++.|.+.+.+.+. +.|.. ..++.|-..+..+|+..+|+.-+++..+..+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 444 56788888889999999999999888876 45654 5677888889999999999999988755433
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=5.8e-15 Score=140.65 Aligned_cols=381 Identities=13% Similarity=0.022 Sum_probs=307.6
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN-SIIH 182 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~ 182 (510)
++|..+.+.+...|++.+|+..++.+.+ .-+-....|..+..++...|+.+.|.+.|.+..+. .|+..... .+-.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 5888899999999999999999998874 22335678888999999999999999999888865 55554433 3444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
..-..|++++|...|.+..+.... =.+.|+.|-..+-..|++..|.+-|++..+.. +--...|-.|-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchH
Confidence 455689999999999888774321 34678889989999999999999999998653 2235678888888999999999
Q ss_pred HHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
|...|...... .|+ ...+..+...|-..|.+|-|+..+++.++.. +--+..|+.|..++-..|++.++.+.+....
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99998887654 444 5678888888999999999999999998754 2235689999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HH
Q 010459 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VT 420 (510)
Q Consensus 342 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 420 (510)
...+....+.+.+...|...|..+.|..+|....+--+. =...+|.|...|-+.|++++|+..+++.++ |+|+. ..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 999999999999999999999999999999988775322 346788999999999999999999999886 77875 67
Q ss_pred HHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHH
Q 010459 421 IGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVI 499 (510)
Q Consensus 421 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~ 499 (510)
|+.+-..|...|+.+.|+..+.+.....+ .-.+.++.|.+.|...|++.+|.+-+++..+ ++||. ..|.-++.++-
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 88888889999999999999988743311 1224467788899999999999999998887 55553 25555555543
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=7.2e-14 Score=127.76 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=185.5
Q ss_pred hhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010459 94 ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS 173 (510)
Q Consensus 94 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 173 (510)
++-...+-++.+|.++|.++++-...+.|.+++..... ...+.+..+||.+|.+-.-..+ .++..+|....+.||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 33334455778899999999998889999999988877 6778888999998876543322 778888988888999
Q ss_pred HHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHh----CCCC---
Q 010459 174 LEIYNSIIHGYSKIGKFNE----ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKL----DGCS--- 241 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~--- 241 (510)
..|+|+++++.++.|+++. |++++.+|++-|+.|...+|..+|..+++-++..+ |..++.++.. ..++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999997654 56788889999999999999999998888877644 4445554432 2222
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 242 -PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR----MHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 242 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
.|...|..-++.|.+..+.+.|.++..-+.... +.|+ .+-|..+....|+....+.-...|+.|+-+-+-|.
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 355667778888888888888888876665421 3333 24466777888888888888888988887777788
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 314 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 342 (510)
..+..-++.+..-.+.++-..+++.+...
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 88888888888888888888887766553
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.2e-12 Score=138.97 Aligned_cols=357 Identities=9% Similarity=-0.049 Sum_probs=258.8
Q ss_pred hhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 010459 71 YHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC 150 (510)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (510)
+...+.+.+++..+. ..+.. .+.++..+..+...+...|++++|...++...+ ..+.+.. +..+...+.
T Consensus 59 ~~~~g~~~~A~~~~~-------~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 59 YRNLKQWQNSLTLWQ-------KALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--GAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHH
Confidence 345556666666665 43333 233466677888889999999999999999985 3444556 888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc---
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS------DTYDGLIQAYGK--- 221 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~--- 221 (510)
..|+.++|+..+++..+... .+...+..+...+.+.+..+.|++.++.... .|+. .....++..+..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999998743 3566777788889899999999999987653 2331 122223333322
Q ss_pred --cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459 222 --YKMY---DEIDMCLKMMKLD-GCSPDHI-TY----NLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY 289 (510)
Q Consensus 222 --~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~ 289 (510)
.+++ ++|...++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. .-..+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 2234 6788888888754 2223321 11 11134556779999999999999987632 332 222257789
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc---------------hHHH
Q 010459 290 MNFGMLDKMEKFYKRLLNSRTPL---KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT---------------ELVW 351 (510)
Q Consensus 290 ~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~ 351 (510)
...|++++|+..++.+.+..-.. .......|..++.+.+++++|...+..+....+.. ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987643111 13456667778899999999999988887664421 2244
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhh
Q 010459 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRI 430 (510)
Q Consensus 352 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~ 430 (510)
......+...|+.++|+++++++....+. +...+..+...+...|++++|++.+++..+. .|+. ..+......+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 56677888899999999999999887554 6888999999999999999999999998874 4764 444455557788
Q ss_pred cCccchHHHHHHHcCC
Q 010459 431 GFDGTGALEMWKRIGF 446 (510)
Q Consensus 431 ~~~~~~a~~~~~~~~~ 446 (510)
.+++++|...++++..
T Consensus 440 ~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA 455 (765)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8899999999998843
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=3e-12 Score=133.71 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=132.5
Q ss_pred hhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 010459 72 HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE 151 (510)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (510)
.+.|....++..+. +.++..+.-.+..+ .++..+...|+.++|+..+++.. .....+......+...|..
T Consensus 45 ~r~Gd~~~Al~~L~-------qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 45 ARAGDTAPVLDYLQ-------EESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HhCCCHHHHHHHHH-------HHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH
Confidence 46667778888877 44433332222333 78888889999999999999775 2222333444444668888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 231 (510)
.|++++|+++|+++.+.... |...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|...
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 89999999999999988533 5677788889999999999999999999775 46666665555555556667679999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
++++.+.. +-+...+..++.+..+.|-...|+++..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99998875 3456667777778888877777766554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=6.2e-12 Score=131.39 Aligned_cols=380 Identities=10% Similarity=0.011 Sum_probs=232.0
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HHHHHHHhc
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP-SLEIYN--SIIHGYSKI 187 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~--~li~~~~~~ 187 (510)
..+.|++..|++.|+...+ ..|+. .++ .++..+...|+.++|+..+++.. .| +...+. .+...|...
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 4589999999999998864 34443 244 88899999999999999999998 34 233333 335688889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
|++++|+++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+-.++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999987644 5677778899999999999999999999876 566666644444444466676799999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH------HHHHHHHHH-----HhhcchhHHHHH
Q 010459 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEVY-----IKNYMFSRLDDL 336 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~-----~~~~~~~~a~~~ 336 (510)
+++.+.... +...+..+..+..+.|-...|.++.++-... +.+... ....+|..- .....+..+.+.
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999987422 5677788888888888888877766542211 000000 000011000 011222222222
Q ss_pred HH---HHHhhcCCch---HHHH----HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459 337 GD---DLASRIGRTE---LVWC----LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406 (510)
Q Consensus 337 ~~---~~~~~~~~~~---~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (510)
+. .+....++++ ..|. -.+.++...++..++.+.|+.+...+.+....+-..+.++|...+++++|..+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22 2222111111 1111 134455666666777777777776664434456666677777777777777777
Q ss_pred HhhhhCC-----CCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccc-----------cccccC---hhHHHHHhhccC
Q 010459 407 SELPTRH-----VKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFK-----------TVEINT---DPLVLAVYGKGH 467 (510)
Q Consensus 407 ~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~---~~~li~~~~~~g 467 (510)
+...... ..++......|..++...+++++|..+++++....+ .|+..- ....+..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 7765321 112333345666667777777777777766643211 011000 112344556667
Q ss_pred chhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459 468 FLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506 (510)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 506 (510)
++.+|++.++++... -+-|......+-+.+...|+.+.
T Consensus 431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 777777777666542 22244455555555555555443
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.4e-14 Score=133.95 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 222 (510)
.+...+.+.|++++|++++++..... ...|...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775433322 1234445555555666667777777777777665433 44456666655 566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 223 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
+++++|.+++...-+. .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665443 3455566667777777777777777777765432 334556666666777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 381 (510)
+++..+.. +-|....+.++..+...|+.+++..++.......+.++..|..+..++...|+.++|+..|++..+....
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 77776654 2245566667777777777777666666666555666666777777777777777777777777664333
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
|......+..++.+.|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666677777777777777777766554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.57 E-value=9.3e-11 Score=125.24 Aligned_cols=104 Identities=7% Similarity=0.031 Sum_probs=71.6
Q ss_pred ChhhHHHH-HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 102 TKDHFWAV-IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE-EGLMEEAVRAFQEMEGFALKPSLEIYNS 179 (510)
Q Consensus 102 ~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 179 (510)
.+.+.... .+.|.+.|++++|.+++..+.+ .+ +.+..-...|-..|.+ .++ +++..++... ++.+...+..
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k-~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~a 252 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQ-QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRIT 252 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHH
Confidence 34444444 7888889999999999998876 32 3344446666667777 366 7777775542 2457888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTY 212 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~ 212 (510)
+...|.+.|+.++|.++++++...-.. |+..+|
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 888888888888888888887654322 444444
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=2.7e-11 Score=118.77 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=148.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD--GLIQAYGKYKMYDEI 228 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~a 228 (510)
.|+++.|++......+.. ++... |-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 356666665555544321 11222 222223335556666666666665542 23332221 224455556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCChhHHHHH
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666665544 334555555556666666666666666666655433211 1222223322233333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 381 (510)
++.+.+. .+.++.....+...+...|+.++|.+........ ++++.. .++.+....++.+++++..+...+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 4433221 1234455555555666666666665555544442 222211 1222333345666677777777666444
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
|...+..+-..|.+.|++++|.+.|+...+. .|+..++..+-..+.+.|+.++|.+++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566667777777777777777777777753 577777777777777777777777777754
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.3e-11 Score=117.96 Aligned_cols=289 Identities=10% Similarity=0.003 Sum_probs=162.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID 229 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 229 (510)
..|+++.|.+.+....+. .|+. ..+-....++.+.|+.+.|.+.+.+..+....++....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346677776666665554 2332 2223334555566677777777766654332222223333455666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH-HHHHHH---HhcCChhHHHHHHHHH
Q 010459 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV-AILDAY---MNFGMLDKMEKFYKRL 305 (510)
Q Consensus 230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~~~a~~~~~~m 305 (510)
..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777666654 335555666666677777777777777766666543 222221 111111 1222222223333333
Q ss_pred HhcCC---CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHH--HHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459 306 LNSRT---PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW--CLRLLSHACLLSHRGIDSVVREMESAKVR 380 (510)
Q Consensus 306 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 380 (510)
.+... +.+...+..+...+...|+.++|.+......+..+.+.... ..........++.+.+.+.++...+..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 33211 12555666666666666666666666666655544443211 11112222234556667777776665332
Q ss_pred cCH--HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 381 WNV--TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 381 p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
|. ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 5556777788888888888888885444445688888888888888888888888888764
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.7e-11 Score=117.05 Aligned_cols=283 Identities=11% Similarity=0.014 Sum_probs=221.9
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHH
Q 010459 116 SSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN--SIIHGYSKIGKFNE 192 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 192 (510)
.|+++.|.+......+ ..+++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~---~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD---HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 6999999988876543 2222333 333344557899999999999999875 55554333 34678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEG 265 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 265 (510)
|.+.++++.+.... +......+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999887643 6778899999999999999999999999987654322 234444554555566677777
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345 (510)
Q Consensus 266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
+++.+.+. .+.+......+..++...|+.++|.+++....+. .++.... ++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77776433 2347778889999999999999999999999874 4555322 33344455899999999999999999
Q ss_pred CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
.++....++...+...+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999986 58889989999999999999999999997653
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.8e-13 Score=128.09 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
.+...+.+.|++++|+++++.... .. .+.|...|..+...+...++++.|++.++++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 457778899999999999965442 22 2345555666777777889999999999999987644 66678888877 79
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEG 265 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 265 (510)
.+++++|.+++...-+.. ++...+..++..+.+.++++++..+++.+... ..+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998875543 56677888999999999999999999998754 235678889999999999999999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345 (510)
Q Consensus 266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.+++..+.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|...+.......+
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999877422 57788889999999999999999999888764 55666788999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459 346 RTELVWCLRLLSHACLLSHRGIDSVVREMES 376 (510)
Q Consensus 346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 376 (510)
.|+.....+...+...|+.++|.++..+..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998877543
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=7.3e-11 Score=116.33 Aligned_cols=297 Identities=9% Similarity=-0.002 Sum_probs=218.5
Q ss_pred HHHHHHH--HhcCCCCcHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 107 WAVIRFL--KNSSRSRQIPQVFDMWKNIEKSRINEF-NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 107 ~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..+.++. ...|+++.|.+.+....+ ..|+.. .+-....++.+.|+.+.|.+.+.+..+....++....-.....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445544 357999999999987653 345533 3444567788889999999999998765322223344445788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCC
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQEF---ACAGL 259 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~ 259 (510)
+.+.|+++.|.+.++.+.+.... +..++..+...|.+.|++++|.+++..+.+.++. +...+. .-..++ ...+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999987633 6678889999999999999999999999988754 333332 112222 33333
Q ss_pred HHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHH--HhhcchhHH
Q 010459 260 LKRMEGTYKSMLTKRM---HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-RKLAEVY--IKNYMFSRL 333 (510)
Q Consensus 260 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~--~~~~~~~~a 333 (510)
.+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 3444445555554422 1377888889999999999999999999998864 333211 0123332 334677788
Q ss_pred HHHHHHHHhhcCCch--HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 334 DDLGDDLASRIGRTE--LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 334 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
.+.++......+.++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888 77888999999999999999999965554556888888899999999999999999999753
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=1.2e-10 Score=124.42 Aligned_cols=321 Identities=8% Similarity=-0.047 Sum_probs=205.7
Q ss_pred HHhcCCCCcHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCC---HHHHHHH------------HHH----------HH
Q 010459 113 LKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGL---MEEAVRA------------FQE----------ME 166 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------~~~----------m~ 166 (510)
..+.|+.++|.++++..... ..-.++...-+-++..|.+.+. ..++..+ ..+ ..
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 34677778888877766541 1122344455567777777665 2222222 111 11
Q ss_pred hC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 010459 167 GF-AL-KP--SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242 (510)
Q Consensus 167 ~~-g~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 242 (510)
.. +. ++ +...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 00 11 23 56667777776665 6777788877776654 355544444444556788888888888877544 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322 (510)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 322 (510)
+...+..+...+.+.|+.++|...+++..+... ++...+..+.......|++++|...+++..+.. |+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 455566666777888888888888888776541 122333333344445688888888888877654 56777777888
Q ss_pred HHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHH
Q 010459 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 402 (510)
.+.+.|++++|...+.......+.+...++.+...+...|+.++|++.|++..+..+. +...+..+..++.+.|++++|
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888887776544 667777788888888888888
Q ss_pred HHHHHhhhhCCCCCCHHH-HHHHHHhhhhcCccchHHHHHHHc
Q 010459 403 RVLLSELPTRHVKPDIVT-IGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+..|++..+. .|+... .-..-....+..+++.+.+-+++.
T Consensus 697 ~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 697 QHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888753 354422 112222233334455555544443
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.7e-13 Score=90.68 Aligned_cols=50 Identities=46% Similarity=0.764 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
||+++||++|++|++.|++++|+++|++|++.|++||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666654
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2.9e-10 Score=114.60 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
++|+++|.+..+..+. |...-|-+--.++..|++.+|..+|.+.++... -+..+|.-+-.+|...|++..|+++|+..
T Consensus 629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544433 444444444455555555555555555554321 12233444444455555555555555543
Q ss_pred -CCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459 445 -GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480 (510)
Q Consensus 445 -~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (510)
.......+......|..++-++|.+.+|.+......
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 112222333444444555555555555555544433
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=1.3e-09 Score=109.33 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=236.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
....|++++|.+++.+..+.. +.+...|-+|-..|-+.|+.++++..+--.-.... -|..-|..+-....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence 333499999999999988775 45778899999999999999998887766544432 2678888888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS----STMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
.-.|.+..+.. +++....--=+..|-+.|+...|.+.|.++.+...+.|. .+--.+++.+...++.+.|.+.+..
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999988775 445444445567788889999999999998876432222 2333456667777777888888877
Q ss_pred HHh-cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-cCCchHHH--------------------------HHHHH
Q 010459 305 LLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVW--------------------------CLRLL 356 (510)
Q Consensus 305 m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--------------------------~~li~ 356 (510)
... .+-..+...++.+...|.+...++.+.........+ ..+++.-| .-++.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 765 333456677888888888888888888776555541 11111111 11223
Q ss_pred HhhhhcccccHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc
Q 010459 357 SHACLLSHRGIDSVVREMESAKVRW--NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434 (510)
Q Consensus 357 ~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 434 (510)
+.......+...-+.....+..+.| +...|.-+..+|.+.|++.+|+.+|..+......-+...|--+-.+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3333444444555555555555333 56678888999999999999999999999765555677888888899999999
Q ss_pred chHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480 (510)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (510)
++|++.+++.... .|.+...--.|-..+-+.|+.++|.+.++.+.
T Consensus 466 e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999988443 12233344456678889999999999999976
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.3e-10 Score=114.24 Aligned_cols=392 Identities=11% Similarity=0.021 Sum_probs=253.3
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
|.-+-++|-..|++++|...|-... +..||.++ +--|..+|.+.|+++.+...|+...+.. +-+..+.-.|-..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESL---KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH---ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 4445566666677777766665443 23344333 3345666777777777777777666552 2234555555555
Q ss_pred HHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHH
Q 010459 184 YSKIG----KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM----MKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 184 ~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~~~~~~~~~li~~~~ 255 (510)
|+..+ ..+.|..++....+.- ..|...|-.+-..|-...-+ .++.+|.. +...+-.+-....|.+-.-+.
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 55553 3455555555554443 23566666666665544333 33554443 334444566777888888888
Q ss_pred HcCCHHHHHHHHHHHHHC---CCccCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459 256 CAGLLKRMEGTYKSMLTK---RMHLRS------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 326 (510)
..|.+++|...|...... -..+|. .+--.+....-..++.+.|.++|..+.+.. +.-+..|--+..+-..
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHh
Confidence 888888888888876643 112222 222234455556678888888888888754 2222333333333333
Q ss_pred hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC-CCcCHHHHHHHHHHHHc----------
Q 010459 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNVTTANIILLAYLK---------- 395 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~---------- 395 (510)
.+...+|...+.........++..|+.+...|.....+..|.+-|......- ..+|..+..+|-+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 4667888888888889999999999999999999999988888777766543 23566666666554432
Q ss_pred --CCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHH
Q 010459 396 --MKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472 (510)
Q Consensus 396 --~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 472 (510)
.+..++|+++|.+..+. .| |...-+-+--.++..|++.+|..+|.+...... ....+|--+.+.|..+|.+..|
T Consensus 623 k~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 24567788888888764 34 444444444457788999999999999854422 2345677778899999999999
Q ss_pred HHHHhhcCC-CCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459 473 EEVYSSLEP-YSREKKRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 473 ~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a 507 (510)
.++|+.... .+..-++...+.|-+++.+.|++.+|
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999987665 44455666778899999998876554
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.1e-10 Score=107.80 Aligned_cols=419 Identities=13% Similarity=0.024 Sum_probs=236.7
Q ss_pred HHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHH-HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH----HHH
Q 010459 68 VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE----FNS 142 (510)
Q Consensus 68 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~ 142 (510)
...|..+....+++..++ .+++...-|+....- .+-..+.+...+.+|+++++.... .-...+- ...
T Consensus 208 aqqy~~ndm~~ealntye-------iivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald-qvpsink~~rikil 279 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYE-------IIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD-QVPSINKDMRIKIL 279 (840)
T ss_pred HHHhhhhHHHHHHhhhhh-------hhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh-hccccchhhHHHHH
Confidence 355777777778887776 333333334333221 233445667778888888876553 2111222 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------HH
Q 010459 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY--------DG 214 (510)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~ 214 (510)
+.+--.+.+.|++++|+.-|+...+. .||..+--.|+-++...|+-++..+.|..|..-...||..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44444567889999999999988766 688776555555666788999999999999765444443333 12
Q ss_pred HHHHHHccC--------CHHHHHHHH---HHHHhCCCCCCHH---------------------HHHHHHHHHHHcCCHHH
Q 010459 215 LIQAYGKYK--------MYDEIDMCL---KMMKLDGCSPDHI---------------------TYNLLIQEFACAGLLKR 262 (510)
Q Consensus 215 li~~~~~~g--------~~~~a~~~~---~~m~~~g~~~~~~---------------------~~~~li~~~~~~g~~~~ 262 (510)
|+.--.+.. +-..|++.. -.+..--+.||-. .--.-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222211111 011111111 1111101111100 00011235677777777
Q ss_pred HHHHHHHHHHCCCccCHHH-------------------------------HHHHH-----HHHHhcCChhHHHHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLRSST-------------------------------MVAIL-----DAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t-------------------------------~~~ll-----~~~~~~g~~~~a~~~~~~m~ 306 (510)
|.++++-..+..-+.-+.. |+.-. ......|++++|.+.+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 7777766654322111110 11000 00112477888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHH
Q 010459 307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386 (510)
Q Consensus 307 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 386 (510)
...-......||.=+ .+-+.|++++|...|-.+......+..+...+...|-...+..+|.+++-+.... ++-|....
T Consensus 518 ~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 665444444444322 3556678888888888888777777777777777777777777777777554433 33366777
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh-c
Q 010459 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG-K 465 (510)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~ 465 (510)
+-|...|-+.|+-..|++.+-+--+. +.-+..|..-|-.-|....-+++++.+|++... ..|+..-|..++..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 77777788888777777765443322 233556655555555556566777777776522 2355566666665443 4
Q ss_pred cCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcC
Q 010459 466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN 502 (510)
Q Consensus 466 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 502 (510)
.|++..|..+++..... ++-|..-..-|++-+...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 67777777777666542 3334444445555554444
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=4.1e-13 Score=88.83 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=7e-12 Score=124.57 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 160 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
.++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|+-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556677777777777777777777777777777 7777766666667777777777777777766654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH
Q 010459 240 CSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 240 ~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
.|...+|+.|..+|.+.||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 5666777777777777777665
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=5.3e-11 Score=118.44 Aligned_cols=265 Identities=14% Similarity=0.113 Sum_probs=138.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 212 (510)
.|+.|+..||.++|.-||..|+++.|- +|.-|.-.....+...++.++.+..+.++.+.+. .|-..||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 566666666666666666666666666 6666655555555666666666666666655444 4555666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHh
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~ 291 (510)
+.|..+|...||+.. |+...+ -.-.++..+..+|-...-..++..+. ..+.-||..+ ++.-...
T Consensus 87 t~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~ 151 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVL 151 (1088)
T ss_pred HHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHH
Confidence 666666666666544 111111 01112222233332222222222211 1112222221 1111122
Q ss_pred cCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh-hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459 292 FGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369 (510)
Q Consensus 292 ~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 369 (510)
.|-++.+.+++..+.... ..|... .+.-... +..+++....-+...+ .++..++.+.+..-...|+.+.|..
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 222333333332221100 000000 0110000 0011111111111111 3455555555556666667788888
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCc
Q 010459 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD 433 (510)
Q Consensus 370 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 433 (510)
++.+|.+.|++.+.+-|..||-+ .+...-+..+.+.|.+.|+.|+..|+.--+-.+...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 89999999998888888888766 78888899999999999999999999888877766544
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=4.5e-09 Score=96.39 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=166.3
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010459 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 195 (510)
.|++.+|.+....-.+ .+ .-....|..-..+--+.|+.+.+-+.+.+..+.--.++...+-+........|+.+.|.+
T Consensus 97 eG~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777766543 22 222334555556666667777777777777765334556666666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 196 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
-++++.+.+.. .........++|.+.|++.....++..|.+.|+-.|. .+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777776544 4556677777777777777777777777777654443 345656655555555555444554
Q ss_pred HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348 (510)
Q Consensus 269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
..... .+-+...-.+++.-+.+.|+.++|.++..+..+++..|.... + -...+-++.....+..+.-....+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 44322 222444555666677777777777777777777666555111 1 112233444444444444444445555
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 349 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
..+.++...|.+++.+.+|.+.|+...+ ..|+..+|+-+-.++.+.|+..+|.+.+++-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555555555555555555555553333 24455555555555555555555555555443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.3e-09 Score=96.95 Aligned_cols=312 Identities=10% Similarity=-0.014 Sum_probs=222.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCC
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLIQEFACAGL 259 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~ 259 (510)
.++-.....++++.=.+.....|+.-+...-+....+.....+++.|+.+|+++.+...- -|..+|+.++ |+++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 445555567777777777777776545444444445555677888888888888876211 2566777665 344433
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339 (510)
Q Consensus 260 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (510)
..-+.---.-..-...+| .|...+.+-|+-.++.++|...|++..+.+ +.....++.+-.-|....+...|....+.
T Consensus 313 skLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 222211111111222333 366667778888889999999999998876 34556778888889999999999999999
Q ss_pred HHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459 340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419 (510)
Q Consensus 340 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (510)
.....+.|-..|..+..+|...+-+.-|+-.|++..+..+. |...|.+|-..|.+.++.++|++.|......| ..+..
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 99999999999999999999999999999999998886554 88999999999999999999999999998765 23667
Q ss_pred HHHHHHHhhhhcCccchHHHHHHHcCCc----ccccc--ccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHH
Q 010459 420 TIGILYDARRIGFDGTGALEMWKRIGFL----FKTVE--INTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN 493 (510)
Q Consensus 420 t~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (510)
.+..|-+.+.+-++.++|...+++.... +...+ ...-..|-.-+.+++++++|.......... .+...-=++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHH
Confidence 8889999999999999998888765221 11111 111122345677889999988766665542 444444467
Q ss_pred HHHHHHhcC
Q 010459 494 LIDLVIKHN 502 (510)
Q Consensus 494 li~~~~~~g 502 (510)
|++.+.+..
T Consensus 546 LlReir~~~ 554 (559)
T KOG1155|consen 546 LLREIRKIQ 554 (559)
T ss_pred HHHHHHHhc
Confidence 777776654
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=3e-08 Score=91.12 Aligned_cols=291 Identities=11% Similarity=0.028 Sum_probs=212.9
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459 145 IIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222 (510)
Q Consensus 145 li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 222 (510)
+..+..+ .|++..|++...+-.+.+-. ....|-.-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444444 59999999999988777643 45566677778888999999999999998765567777888888888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCCh
Q 010459 223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGML 295 (510)
Q Consensus 223 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~ 295 (510)
|+.+.|..-.+++.+.+ +.+.........+|.+.|++.....+...|.+.|.--|+ .+|..+++-+...+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999988776 557788889999999999999999999999998865443 5788888877777777
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHH
Q 010459 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME 375 (510)
Q Consensus 296 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 375 (510)
+.-...++...+. ..-++....+++.-+..+|..++|.++..+..+....+. -.....+..-++.+.-.+..++..
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHH
Confidence 7666666665432 244566777788888888888888888766655443333 122234444555555555555544
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 376 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+.... +.-.+.+|-..|.+++.|.+|...|+...+ ..|+..+|+-+-+++.+.|+..+|.+..++.
T Consensus 322 ~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 322 KQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 43222 336667777778888888888888886655 3578888888888888888877777777654
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=6.3e-10 Score=108.17 Aligned_cols=279 Identities=10% Similarity=0.024 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHH-HHH
Q 010459 154 LMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYSKIGKFNEALLFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYD-EID 229 (510)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~-~a~ 229 (510)
+..+|...|...+.. .+|. .+..-+-.+|...+++++|.++|+..++.. ..-+...|.+.+-.+-+.-.+. .|.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 567888888886654 3343 455567788888889999999998887643 1226778888776543322111 122
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
.+.+.. +-...+|.++-.+|.-.++.+.|++.|++..+.+.. ..++|+.+-.-+.....+|.|...|+..+
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 232222 346788999999999999999999999888876322 56788888777888888888888887664
Q ss_pred CCCCHHHHHH---HHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHH
Q 010459 310 TPLKEDLVRK---LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386 (510)
Q Consensus 310 ~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 386 (510)
..|+..|++ |.-.|.|.++++.|+-.++......+.+.+....+...+-+.|+.++|++++++....... |...-
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 455666665 4556788888888888888888888888888888888888888888888888887776655 44443
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH-HHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459 387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-IGILYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
--....+...++.++|+..++++++ +.|+..+ |..+...|.+-|+.+.|+.-|-.+...
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3445556667888888888888876 4566544 555555777778888887777766444
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.9e-10 Score=107.13 Aligned_cols=285 Identities=11% Similarity=0.056 Sum_probs=224.8
Q ss_pred CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh-HHHH
Q 010459 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKF-NEAL 194 (510)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~-~~a~ 194 (510)
+.++|...|..... ...-..++..-+-.+|-..+++++|.++|+...+... ..+...|.+.+-.+-+.=.+ -.|.
T Consensus 334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 56788888887442 3333346777888999999999999999999987631 23677888888655332111 1222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
++.+.+ +-.+.||.++-++|+-+++.+.|.+.|++..+.. +....+|+.+-.-+.....+|.|...|+......
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 233222 2356899999999999999999999999998764 3378899888888999999999999999877542
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH
Q 010459 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354 (510)
Q Consensus 275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 354 (510)
.+ +-..|..+-..|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|..++|.++++......+.++..-.-.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 11 23455567788999999999999999988765 44666777888889999999999999999999999999888888
Q ss_pred HHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC
Q 010459 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413 (510)
Q Consensus 355 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 413 (510)
+..+...++.++|+..++++++.-++ +...|-.+...|-+.|+.+.|+.-|--+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 88999999999999999999986443 66778888889999999999999999888743
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.29 E-value=3.6e-07 Score=88.97 Aligned_cols=391 Identities=6% Similarity=-0.072 Sum_probs=267.0
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459 97 HDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174 (510)
Q Consensus 97 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 174 (510)
.|...+...|-.=...|-..|..--+..+...... -|+. --..+|+.-...|.+.+.++-|+.+|....+-- +.+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchh
Confidence 34455555555555566666666666555555543 2322 122466667777777777777777777766542 3356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
..|......=-..|..++-..+|++....-. -...-|-....-+...|++..|..++.+.-+... -+...|-+-+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHh
Confidence 6777777766677777888888888776532 2455566666667777888888888888877652 3777888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (510)
..+..++.|..+|.+.... .|+...|.--+..-.-.+..++|.+++++.++.- +.-...|-.+-..+-+.++++.+.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888877654 4566666665666666788888888888877653 223445666777777778888888
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (510)
..+..=....+...-.|-.+...--..|..-.|..++++-+-+++. |...|-..|..=.+.|..+.|..+..+..+. .
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 7766666666777888888888888888888888898888887766 7888888888888999999888887777653 2
Q ss_pred CCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHH
Q 010459 415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQN 493 (510)
Q Consensus 415 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 493 (510)
.-+...|..-|....+.++-......+++... +....-.+...|-....++.|.+.|++..+ +.||. -+|.-
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~ 856 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAW 856 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHH
Confidence 23445666666666666666666666555422 222333334455556677788888877766 34443 26666
Q ss_pred HHHHHHhcCC
Q 010459 494 LIDLVIKHNG 503 (510)
Q Consensus 494 li~~~~~~g~ 503 (510)
+..-+.++|.
T Consensus 857 fykfel~hG~ 866 (913)
T KOG0495|consen 857 FYKFELRHGT 866 (913)
T ss_pred HHHHHHHhCC
Confidence 7777777774
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=3.3e-09 Score=96.17 Aligned_cols=198 Identities=10% Similarity=0.026 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..+..+...+...|++++|.+.++...+ ..+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555666666666666666665543 122334555556666666666666666666665543 2244555556666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
+...|++++|.+.|++.......| ....+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665432111 23344455555666666666666666655442 2234455555566666666666
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665544 22234444455555555666666665555443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=2e-08 Score=89.60 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL------EIYNS 179 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ 179 (510)
|..=++.+. ..+.++|.++|-.|.+ .-+-...+--+|-+.|-+.|.+|.|+++...+.++ ||. ...-.
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 333334333 3578888888888874 33334445556777888888888888888887753 442 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFA 255 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~ 255 (510)
|-.-|...|-+|+|..+|..+.+.|.- -......|+..|-+..+|++|..+-+++.+.+-.+. ...|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 666677788888888888888765432 345667788888888888888888888876654433 223445555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 335 (510)
...+.+.|..++.+..+.+.+ .+..--.+-+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 667788888888877766422 2223334556677788888888888888877655555666777777777777666555
Q ss_pred HH
Q 010459 336 LG 337 (510)
Q Consensus 336 ~~ 337 (510)
.+
T Consensus 271 fL 272 (389)
T COG2956 271 FL 272 (389)
T ss_pred HH
Confidence 53
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=6.1e-08 Score=97.62 Aligned_cols=352 Identities=9% Similarity=0.043 Sum_probs=258.2
Q ss_pred hHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 010459 75 QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL 154 (510)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (510)
|+.+++.+.+. .+.+.. +.+...|.++-..|-+.|+.+++...+-... +-.+-|...|-.+-+...+.|+
T Consensus 153 g~~eeA~~i~~-------EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 153 GDLEEAEEILM-------EVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred CCHHHHHHHHH-------HHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhccc
Confidence 67777777766 333332 3355688999999999999999988776554 4556677899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHHHH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYKMYDEIDM 230 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~li~~~~~~g~~~~a~~ 230 (510)
++.|.-.|.+..+.. +++...+---+..|-+.|+...|.+.|.++.......|..-+. ..+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999875 3355555556678899999999999999998865432333333 34556777788899999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------ccCHHHH
Q 010459 231 CLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM---------------------------HLRSSTM 282 (510)
Q Consensus 231 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~ 282 (510)
.++..... +-..+...++.++..|.+...++.|......+..... .++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99887762 2245667788999999999999999999888866211 122222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC-CchHHHHHHHHHhh
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRT--PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHA 359 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~ 359 (510)
--+.-++.+....+...-+...+.+..+ .-+...|.-+.++|...|.+.+|.+++..+.+.++ .+...|.-+...|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1223334455666666666666666663 34567888999999999999999999988886654 45788999999999
Q ss_pred hhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh--------CCCCCCHHHHHHHHHhhhhc
Q 010459 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT--------RHVKPDIVTIGILYDARRIG 431 (510)
Q Consensus 360 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~li~~~~~~ 431 (510)
..|..+.|.+.|+......+. +...-..|-..+-+.|+.++|.+.+..|.. .+..|+.....-..+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999887544 555666677788999999999999999752 22344444333344455666
Q ss_pred CccchHHH
Q 010459 432 FDGTGALE 439 (510)
Q Consensus 432 ~~~~~a~~ 439 (510)
|+.++=+.
T Consensus 540 gk~E~fi~ 547 (895)
T KOG2076|consen 540 GKREEFIN 547 (895)
T ss_pred hhHHHHHH
Confidence 66655433
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.1e-08 Score=92.64 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=156.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
......+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 3445678888899999999999999999988764 33577888899999999999999999999887653 356678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
...+...|++++|.+.|++..+... ......+..+...+...|++++|...+++....... +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 8899999999999999999886422 223456777788889999999999999998875422 45677888888999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (510)
+++|.+.+++..+. .+.+...+..+...+...|+.+.+......
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988776 344556666666777777777666655433
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2e-09 Score=99.78 Aligned_cols=389 Identities=12% Similarity=0.060 Sum_probs=236.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL------EIYNSI 180 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l 180 (510)
.+.+-|.......+|+..++.+.+ ...-|+.-.. -.+-+.+.+...+..|+..++..... .|++ -..|.+
T Consensus 206 nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhc
Confidence 445556666777889999988877 5555655332 22345567788899999998877655 3332 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------------CCHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS------------PDHITYN 248 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~ 248 (510)
--.+.+.|.++.|+..|+...+. .|+-.+--.|+-++...|+-++..+.|..|...... |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 55688999999999999998775 478777767777788889999999999999753222 3333333
Q ss_pred HHHH-----HHHHcC--CHHHHHHHHHHHHHCCCccCHHH-------------HH--------HHHHHHHhcCChhHHHH
Q 010459 249 LLIQ-----EFACAG--LLKRMEGTYKSMLTKRMHLRSST-------------MV--------AILDAYMNFGMLDKMEK 300 (510)
Q Consensus 249 ~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-------------~~--------~ll~~~~~~g~~~~a~~ 300 (510)
--|. -.-+.+ +.++++-.-..++.--+.|+-.. +. .-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 3222 111111 12222222222222223333100 00 11234678899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh------------------------------------hcchhHHHHHHHHHHhhc
Q 010459 301 FYKRLLNSRTPLKEDLVRKLAEVYIK------------------------------------NYMFSRLDDLGDDLASRI 344 (510)
Q Consensus 301 ~~~~m~~~~~~~~~~~~~~li~~~~~------------------------------------~~~~~~a~~~~~~~~~~~ 344 (510)
+++-+.+..-......-+.|-..+.- +|++++|...++......
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 99988765433322222222222211 244444444444333222
Q ss_pred CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHH
Q 010459 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGI 423 (510)
Q Consensus 345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 423 (510)
..-......+...+-..|+.++|++.|-++...-. -+......+.+.|.-..+...|++++.+... +.| |+...+-
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHH
Confidence 22222222233345556666777776665543211 2555555666667667777777777655443 344 6677777
Q ss_pred HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHH-hcC
Q 010459 424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVI-KHN 502 (510)
Q Consensus 424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g 502 (510)
|-..|-+.|+-.+|.+..-.- ....+.+..+..-+..-|....-++.|...|++..- +.|+..-|-.||..|. +.|
T Consensus 598 l~dlydqegdksqafq~~yds-yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 888888999888888875443 122344555555666778888899999999988765 7999999999997665 556
Q ss_pred CCCCC
Q 010459 503 GKNLD 507 (510)
Q Consensus 503 ~~~~a 507 (510)
++.+|
T Consensus 675 nyqka 679 (840)
T KOG2003|consen 675 NYQKA 679 (840)
T ss_pred cHHHH
Confidence 65443
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.25 E-value=1.3e-07 Score=91.86 Aligned_cols=362 Identities=9% Similarity=-0.083 Sum_probs=290.2
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.||..-...|.+.+.++-|+.+|.... .-++.+...|...+..=-..|..++-..+|.+....- +.....|-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al--qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL--QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH--hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 477788888888889999999998877 4566777888888777777899999999999998763 3466778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 263 (510)
+...|++..|..++.+.-+.... +...|-+-+..-....+++.|..+|.+.... .|+...|.--+..--..+..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 89999999999999998876544 7788999999999999999999999998875 57888888777777788999999
Q ss_pred HHHHHHHHHCCCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459 264 EGTYKSMLTKRMHLRS-STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 264 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 342 (510)
++++++..+. -|+- -.|..+-+.+-+.++++.|++.|..-.+. ++-.+..+-.|.+.=-+.|.+-.|+.++....-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999888765 3453 45666677788888889888888665443 344567788888888888999999999999999
Q ss_pred hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHH
Q 010459 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422 (510)
Q Consensus 343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (510)
.++.+...|-..|..-.+.|..+.|..+..+..+.-+. +...|.--|....+.++--.....+++-. -|+....
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVll 821 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLL 821 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHH
Confidence 99999999999999999999999999988887776433 67788888887777777555555444333 3666666
Q ss_pred HHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 423 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
++-..+-....++.|.+.|.+....+. ..-..|..+...+.++|.-++-.+++.....
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 666677777789999999998754433 2345677888888999988888888887776
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=4.1e-07 Score=85.31 Aligned_cols=374 Identities=12% Similarity=0.045 Sum_probs=250.6
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.|-..+.+=.++..+..|+.+|++... -++.--..|--.+.+=-..|++..|.++|+.-.+. +|+...|++.|+-=
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence 444566666777888888888887763 22322345556666666778888888888887765 78888888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GC-SPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~ 262 (510)
.+-+..+.|.+++++.+- +.|++.+|--....=-++|.+..|.++|+...+. |- .-+...+++...-=.++..++.
T Consensus 185 lRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888766 4588888877777777778887777777766542 10 0122233333222223333333
Q ss_pred HHHHHHH--------------------------------------------HHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 263 MEGTYKS--------------------------------------------MLTKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 263 A~~~~~~--------------------------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
|.-+|+- +... -+.|-.+|-..++.-...|+.+..
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~I 341 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRI 341 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHH
Confidence 3333321 1111 123556677777777788999999
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhh----hhccc
Q 010459 299 EKFYKRLLNSRTPLKE--DLVRKLAEV--------YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA----CLLSH 364 (510)
Q Consensus 299 ~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~ 364 (510)
+++|++.+..- +|-. ..+.-.|-. =....+++...++++......+....++.-+=..|+ ++.+.
T Consensus 342 re~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l 420 (677)
T KOG1915|consen 342 RETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL 420 (677)
T ss_pred HHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc
Confidence 99999988643 4421 111111111 123467778888888877777777666655544444 55677
Q ss_pred ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHH
Q 010459 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKR 443 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~ 443 (510)
..|.+++.... |..|-..+|-..|..=.+.+.+|....+++..++.+ | |-.+|.-.-..-...|+.+.|..+|.-
T Consensus 421 ~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 421 TGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888888765 556788899999998899999999999999999863 5 446666665555667899999999987
Q ss_pred cCCccccccccChhHHHHHh----hccCchhHHHHHHhhcCCCCCCCCcccHHHHH
Q 010459 444 IGFLFKTVEINTDPLVLAVY----GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI 495 (510)
Q Consensus 444 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 495 (510)
.... |....-..|+.+| ...|.++.|..+++++++. .+-..+|-++.
T Consensus 497 Ai~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 497 AISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 7544 3344444555555 4689999999999999984 33333555443
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.7e-08 Score=90.00 Aligned_cols=222 Identities=10% Similarity=0.016 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ---SDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a 228 (510)
+.+.++|.+.|-+|.+... -+..+--+|-+.|-+.|..++|+++.+.+.+..--+. ....-.|-.-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3566777777777775321 1333445666777777777777777777655421111 11223444556666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS----STMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
+.+|..+.+.+ .--.....-|+..|-...+|++|+++-+++.+.+-.+.. .-|--+...+....+++.|..++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777776544 233445566677777777777777777766665544332 2233344444445566666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC-chHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR-TELVWCLRLLSHACLLSHRGIDSVVREMES 376 (510)
Q Consensus 305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 376 (510)
..+.+ +-.+..-..+-+.+...|++..|.+.++.+...++. -..+...+..+|...|+.++....+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65543 112222233444444445444444443333322211 123333333444444444444444443333
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=6.4e-09 Score=106.57 Aligned_cols=178 Identities=13% Similarity=0.024 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459 155 MEEAVRAFQEMEGFALKP-SLEIYNSIIHGYS---------KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 224 (510)
+++|...|++..+. .| +...|..+..+|. ..++.++|...+++..+.+.. +..++..+-..+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45556666655544 22 2333433333322 112345555555555554322 44455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 225 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
+++|...|++..+.. +.+...|..+...+...|++++|...+++..+.... +...+..++..+...|++++|.+.+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666665555443 223444555555555556666666665555544322 111122223334445555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337 (510)
Q Consensus 305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (510)
..+...+-++..+..+...|...|++++|...+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 543321112223333444444444444444443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.6e-08 Score=103.70 Aligned_cols=226 Identities=8% Similarity=-0.111 Sum_probs=160.5
Q ss_pred CChhhHHHHHHHHHhc-----CCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNS-----SRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCE---------EGLMEEAVRAFQEM 165 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 165 (510)
.+...|...+++-... +..++|.+.|+...+ ..| +...|..+..+|.. .+++++|...+++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4556666676664322 335688889988764 344 34556555554442 34589999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H
Q 010459 166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD-H 244 (510)
Q Consensus 166 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~ 244 (510)
.+.+ +-+...|..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.. |+ .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~ 406 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA 406 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence 9875 337788888988999999999999999999886532 56678889999999999999999999998774 43 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324 (510)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 324 (510)
..+..+...+...|++++|...+++......+-+...+..+..++...|+.++|.+.+.++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33344455577789999999999998765322234456667788889999999999998875542 22233344555555
Q ss_pred HhhcchhHHHHH
Q 010459 325 IKNYMFSRLDDL 336 (510)
Q Consensus 325 ~~~~~~~~a~~~ 336 (510)
...| +.+...
T Consensus 486 ~~~g--~~a~~~ 495 (553)
T PRK12370 486 CQNS--ERALPT 495 (553)
T ss_pred hccH--HHHHHH
Confidence 6555 244443
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4e-08 Score=91.73 Aligned_cols=254 Identities=11% Similarity=0.009 Sum_probs=139.1
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK--PSLEIYNSIIHGYSKIGK 189 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~ 189 (510)
++......+++.+-.+.... .|++-+...-+-...+.-...|++.|+.+|+++.+...- -|..+|..++..--...+
T Consensus 236 a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444445555554444443 444444443333444444556666666666666655311 144555555433222111
Q ss_pred hH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 190 FN-EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 190 ~~-~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
+. .|..++. -...+ +.|...+.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|...++...|.+-++
T Consensus 315 Ls~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 11122 2355666666666667777777777766554 3355666666667777777777777776
Q ss_pred HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348 (510)
Q Consensus 269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
...+-... |-..|-.+-++|.-.+.+.-|+-.|++..+.. +-|...+.+|-+.|.+.++.++|.+.+...........
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 66654322 55666667777777777666666666665543 34566666666666666666666666655554444445
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHH
Q 010459 349 LVWCLRLLSHACLLSHRGIDSVVREM 374 (510)
Q Consensus 349 ~~~~~li~~~~~~~~~~~a~~~~~~m 374 (510)
..+..+...|-..++.++|...|++-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555666666655555555443
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=4.8e-07 Score=84.90 Aligned_cols=364 Identities=12% Similarity=0.049 Sum_probs=250.7
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~ 183 (510)
.|-....-=-..+++..|+.+|++.. .+-..+...|--.+.+=.++..+..|..+|++.... -|-+ ..|---+..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERAL--dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERAL--DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH--hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 44444444455778889999999887 455778889999999999999999999999998765 3333 456666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 263 (510)
=-..|++..|.++|++-.+ ..||...|++.|+.=.+-+.++.|..++++..-- .|++.+|--....=.++|....|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 6678999999999998766 6799999999999999999999999999998754 69999999998888999999999
Q ss_pred HHHHHHHHHC-CC-ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcchhHHHHHH--
Q 010459 264 EGTYKSMLTK-RM-HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK--EDLVRKLAEVYIKNYMFSRLDDLG-- 337 (510)
Q Consensus 264 ~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~-- 337 (510)
..+|....+. |- ..+...|.+...-=.....++.|.-+|+..+++- +.+ ...|..+...=-+-|+.....+..
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999887643 21 1133445555555556778899999999888653 222 445555555555556544443332
Q ss_pred ------HHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-CH-HHHH--------HHHHHHHcCCChhH
Q 010459 338 ------DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-NV-TTAN--------IILLAYLKMKDFKH 401 (510)
Q Consensus 338 ------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~--------~li~~~~~~g~~~~ 401 (510)
....+..+-+-.+|--.+..--..|+.+...++|++.... ++| .. ..|. -.+-.=....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344667778888888888888889999999999988865 333 21 1111 11111134677888
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHHHhh----hhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHh
Q 010459 402 LRVLLSELPTRHVKPDIVTIGILYDAR----RIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS 477 (510)
Q Consensus 402 A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (510)
+.++|+..++. |+...+||.-+=-.| .++.++..|.+++..... ..|....+.-.|..=.+.+.++.+.++++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888777762 333456665443332 345566666666654421 12333444444444445555666666666
Q ss_pred hcCC
Q 010459 478 SLEP 481 (510)
Q Consensus 478 ~m~~ 481 (510)
+.++
T Consensus 462 kfle 465 (677)
T KOG1915|consen 462 KFLE 465 (677)
T ss_pred HHHh
Confidence 5555
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=5.3e-07 Score=84.96 Aligned_cols=364 Identities=10% Similarity=-0.031 Sum_probs=244.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYS 185 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~ 185 (510)
..-+-|.++|++++|.+.+.+... ..|| +.-|...-.+|...|+|+.+.+--....+. .|+- -.+.---+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 445568889999999999998864 5677 777888999999999999988877777654 3332 23333334444
Q ss_pred hcCChHHHH----------------------HHHHH---------HHHC--CCCCCHHHHHHHHHHHHcc----------
Q 010459 186 KIGKFNEAL----------------------LFLNE---------MKEM--NLSPQSDTYDGLIQAYGKY---------- 222 (510)
Q Consensus 186 ~~g~~~~a~----------------------~~~~~---------m~~~--g~~p~~~t~~~li~~~~~~---------- 222 (510)
+.|++++|+ +++.. |.+. .+.|......+....+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 555555443 22211 1111 1334444333333332211
Q ss_pred ---------------C---CHHHHHHHHHHHHh---CCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 223 ---------------K---MYDEIDMCLKMMKL---DGCSPD---------HITYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 223 ---------------g---~~~~a~~~~~~m~~---~g~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
+ .+.+|...+.+-.. .....+ ..+...--..+.-.|+...|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 12222222222110 001112 22222222335567999999999999998
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352 (510)
Q Consensus 273 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (510)
....++.. |.-+..+|....+.++....|....+.+ +-++.+|-.--.++.-.+++++|..-|+...+..+.+...+-
T Consensus 355 l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 76554442 6667778999999999999999988765 446667777777777788899999998888888888888888
Q ss_pred HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-----CCCCHHH--HHHHH
Q 010459 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-----VKPDIVT--IGILY 425 (510)
Q Consensus 353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t--~~~li 425 (510)
.+..+..+.+.++++...|++..++= +--+..|+.....+...++++.|.+.|+..++.. +..+..+ -..++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 88888888899999999999988763 3356788888889999999999999999987531 1112222 12222
Q ss_pred HhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 426 DARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
. +.-.+++..|.+++++....+++.+ ..+..|...-.+.|++++|.++|++-..
T Consensus 512 ~-~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 512 V-LQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2234789999999999876644433 3466677778889999999999987654
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.7e-08 Score=88.79 Aligned_cols=235 Identities=15% Similarity=0.114 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 010459 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY-DGLIQAYGK 221 (510)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~ 221 (510)
+-+-.+|.+.|.+.+|...|..-.+. .|-+.||-.|-..|.+..+++.|+.+|.+-++ ..|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 34445555555555555555555444 44445555555555555555555555555433 23333443 233444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
.++.++|.++++...+.. +-++.....+..+|.-.++++.|+..|+++.+.|+. +...|..+--+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 555555555555554432 234444444445555555555555555555555544 444455544444455555555444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 381 (510)
|.+....--.| ..-..+|..+.......|+...|.+-|+-....+..
T Consensus 381 f~RAlstat~~--------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~- 427 (478)
T KOG1129|consen 381 FQRALSTATQP--------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ- 427 (478)
T ss_pred HHHHHhhccCc--------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-
Confidence 44443222111 223456777777777888888888888887776555
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (510)
+...+|.|.-.-.+.|++++|..++....+ +.|+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence 667888888778889999999999888765 34554
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=4.5e-07 Score=90.24 Aligned_cols=290 Identities=12% Similarity=0.064 Sum_probs=200.4
Q ss_pred HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc--
Q 010459 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKI-- 187 (510)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~-- 187 (510)
..+...|++++|++.++.-. ..+.............+.+.|+.++|..+|..+.+.+ |+-.. |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44678899999999997653 2334445566788899999999999999999999885 44444 44555554222
Q ss_pred ---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459 188 ---GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263 (510)
Q Consensus 188 ---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 263 (510)
.+.+...++|+++...- |...+...+.-.+..-..+ ..+...+..+...|+++ +|+.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 25678888999886654 4333333333223222222 23555666677777653 566666667665555666
Q ss_pred HHHHHHHHHC----C----------CccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459 264 EGTYKSMLTK----R----------MHLRS--STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327 (510)
Q Consensus 264 ~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 327 (510)
.+++...... + -.|.. .++.-+...|...|++++|.+..+..+++. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666665432 1 12333 244556777888999999999999888875 33367788888888899
Q ss_pred cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHH------HH--HHHHHHHHcCCCh
Q 010459 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT------TA--NIILLAYLKMKDF 399 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~ 399 (510)
|++.+|.+...........|-..=+-....+.++|+.++|.+++....+.+..|-.. .| .-...+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999888888888887777778888889999999999998888776544322 22 3345588899999
Q ss_pred hHHHHHHHhhh
Q 010459 400 KHLRVLLSELP 410 (510)
Q Consensus 400 ~~A~~~~~~m~ 410 (510)
..|++.|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887666553
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=8.1e-07 Score=83.76 Aligned_cols=354 Identities=11% Similarity=0.039 Sum_probs=237.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH----------
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD-TY---------- 212 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~---------- 212 (510)
.-+-|-++|.+++|++.+.+..+. .|| .+.|...-.+|...|+|+++.+.-...++. .|+-+ .+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 334577899999999999999876 788 888999999999999999888766665553 33322 22
Q ss_pred ------------HHHHHHHHccCCHHHHHHHHHHH---------HhCC--CCCCHHHHHHHHHHHHH-------------
Q 010459 213 ------------DGLIQAYGKYKMYDEIDMCLKMM---------KLDG--CSPDHITYNLLIQEFAC------------- 256 (510)
Q Consensus 213 ------------~~li~~~~~~g~~~~a~~~~~~m---------~~~g--~~~~~~~~~~li~~~~~------------- 256 (510)
.+++.++....-..-+.++++.. .+.+ +-|+....++..+.+-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 33333333332223344444332 1111 12333332222222110
Q ss_pred ------------cC---CHHHHHHHHHHHHH-CCCccC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 257 ------------AG---LLKRMEGTYKSMLT-KRMHLR-----------SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 257 ------------~g---~~~~A~~~~~~m~~-~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
.+ .+..|...+.+-.. .-..++ ..+....-..+.-.|+.-.+.+-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 11 12222222222111 001111 1222222233445799999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHH
Q 010459 310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389 (510)
Q Consensus 310 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 389 (510)
..+ ...|.-+..+|....+-.+....|.......+.++.+|.--...+.-.+++++|..-|++..+..+. +...|..+
T Consensus 357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl 434 (606)
T KOG0547|consen 357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQL 434 (606)
T ss_pred ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHH
Confidence 433 3337788888999999999999999999999999999999999999999999999999999887555 67778877
Q ss_pred HHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccc---cChhHHHH---Hh
Q 010459 390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI---NTDPLVLA---VY 463 (510)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~---~~ 463 (510)
--+.-+.+++++++..|++.+++ +.--...|+..-..+...++++.|.+.++.........+. ..-+.+-. .+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 77778999999999999999865 3334678888888999999999999999987444322111 11111111 11
Q ss_pred hccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459 464 GKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a 507 (510)
--.+++..|.+++++..+ ++|.. ..|.+|-..-.+.|+.+.|
T Consensus 514 qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHH
Confidence 134899999999999988 45543 5788888888888887765
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=9.1e-07 Score=88.08 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=201.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c--
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-K-- 221 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~-- 221 (510)
...+...|++++|++.++.-.+. .+|.. ........+.+.|+.++|..+|+.+.+.+ ||...|-..+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 45567889999999999875544 45554 45567788899999999999999999976 56666644444443 2
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 222 ---YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL-KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 222 ---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
..+.+....+++++.+.- |.......+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 235777888899887653 3333333332222222233 34455666777888763 66666666766666666
Q ss_pred HHHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q 010459 298 MEKFYKRLLNS----R----------TPLKED--LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361 (510)
Q Consensus 298 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 361 (510)
..+++...... + -.|... ++.-+...|...|++++|...........+..+..|..-...+-..
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 66666655432 1 123332 3455677788899999999998888888888888888889999999
Q ss_pred cccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH-----HHH---HHHhhhhcCc
Q 010459 362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-----IGI---LYDARRIGFD 433 (510)
Q Consensus 362 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~---li~~~~~~~~ 433 (510)
|+.++|.+.++..+..+.. |-..=+-....+.++|++++|.+++....+.+..|-... ..- .-.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887665 667777777888999999999999999887665443311 112 2226888888
Q ss_pred cchHHHHHHHc
Q 010459 434 GTGALEMWKRI 444 (510)
Q Consensus 434 ~~~a~~~~~~~ 444 (510)
+..|++.|..+
T Consensus 321 ~~~ALk~~~~v 331 (517)
T PF12569_consen 321 YGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHH
Confidence 88888877655
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1e-07 Score=85.19 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=141.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHH
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQEFAC 256 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~ 256 (510)
+-|-.+|.+.|.+.+|.+.|+.-++. .|-+.||-.|-..|.+..+.+.|+.+|.+-.+. .|-.+||- -+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44566666667777777666666554 234456666666666666677777666665543 34444433 34455555
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
.++.++|.++|+...+.. +.+......+...|.-.++++-|...+.++.+.|+. ++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~------------------ 362 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFC------------------ 362 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHh------------------
Confidence 666666666666665442 114444455555555666666666666666666643 334444
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (510)
.+...|...++++-++.-|.+....--.|+ ...|-.+-......|++..|.+.|+-....+
T Consensus 363 ----------------NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 363 ----------------NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred ----------------hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 444444444444555555655554333333 3567777777788999999999999888642
Q ss_pred CCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459 415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 415 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
.-....++.|--.-.+.|++++|..++......
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 123466777777778999999999999877443
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.93 E-value=3.4e-05 Score=75.51 Aligned_cols=430 Identities=9% Similarity=0.058 Sum_probs=220.3
Q ss_pred HHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHH
Q 010459 68 VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKI 145 (510)
Q Consensus 68 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 145 (510)
|.-....++++++-+.+....... ......++.+-..|.-+-...++.-+.-....+=.-|+...+.-+|. +.|++|
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 333455666666666665332221 11122222333345544444455444433333333333212233454 568888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHC
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----------------------KFNEALLFLNEMKEM 203 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~ 203 (510)
.+.|.+.|.++.|..+|++..+. ..++.-++.+.++|++-. +++-.+.-|+.+.+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 88888888888888888876643 223333344444433211 112222223332222
Q ss_pred CC-----------CCCH--------------------------------------HHHHHHHHHHHccCCHHHHHHHHHH
Q 010459 204 NL-----------SPQS--------------------------------------DTYDGLIQAYGKYKMYDEIDMCLKM 234 (510)
Q Consensus 204 g~-----------~p~~--------------------------------------~t~~~li~~~~~~g~~~~a~~~~~~ 234 (510)
+. .-++ ..|..+.+.|-..|+++.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 10 0011 2335666667777888888888887
Q ss_pred HHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------cc-------CHHHHHHHHHHHHhcCC
Q 010459 235 MKLDGCSPD---HITYNLLIQEFACAGLLKRMEGTYKSMLTKRM----------HL-------RSSTMVAILDAYMNFGM 294 (510)
Q Consensus 235 m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p-------~~~t~~~ll~~~~~~g~ 294 (510)
..+-..+.- ..+|......=.+..+++.|+++.+......- .| +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 765432211 34565555666667777777777665532111 11 12234444455555677
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc--hHHHHHHHHHhhhh---cccccHHH
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT--ELVWCLRLLSHACL---LSHRGIDS 369 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~---~~~~~a~~ 369 (510)
++....+++.+++..+.....+. ...-.+-.+..++++.++.+.-....+.. -..|++-+.-+... -..+.|..
T Consensus 493 festk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 77788888888776543222222 22222334455666666655444333333 45688766555443 24578899
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHH--HHcCCChhHHHHHHHhhhhCCCCCCH--HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459 370 VVREMESAKVRWNVTTANIILLA--YLKMKDFKHLRVLLSELPTRHVKPDI--VTIGILYDARRIGFDGTGALEMWKRIG 445 (510)
Q Consensus 370 ~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~~~ 445 (510)
+|++..+ |.+|...-+--|+-+ =-+.|....|+.++++... ++.|.. ..|+..|.--...-.+....+++++..
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999888 555543322222211 1245888888888888654 355543 457776663222222333344444432
Q ss_pred CccccccccChhH---HHHHhhccCchhHHHHHHhhcCCC-CCCCCcccHHHHHHHHHhcCCCC
Q 010459 446 FLFKTVEINTDPL---VLAVYGKGHFLRYCEEVYSSLEPY-SREKKRWTYQNLIDLVIKHNGKN 505 (510)
Q Consensus 446 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 505 (510)
.. -|+...-.. ..++=++-|.++.|..++..-.+. ....+..-|.++=.-=.+||+-|
T Consensus 650 e~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 650 ES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred Hh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 11 022111111 123345678888888888655542 12223335677766667777643
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=2.3e-05 Score=76.17 Aligned_cols=199 Identities=11% Similarity=-0.041 Sum_probs=135.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.|..+...+...|+.+.+.+.+....+.....++..- .......+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 4555556666778888887777766543333334322 2223345667899999999999988763 334445553 223
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459 184 YSK----IGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258 (510)
Q Consensus 184 ~~~----~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 258 (510)
+.. .+..+.+.+.+.. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+-..|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 322 4455555555544 2223333 3344566678889999999999999998875 446677888889999999
Q ss_pred CHHHHHHHHHHHHHCCC-ccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 259 LLKRMEGTYKSMLTKRM-HLRS--STMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 259 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
++++|...+++...... .|+. ..|..+...+...|+.++|..+++.....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999998876532 2332 34667888899999999999999998643
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.3e-06 Score=82.21 Aligned_cols=265 Identities=10% Similarity=-0.022 Sum_probs=191.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
|....-.-.+-+-..+++.+.+++++...+.. ++....+-.=|..+.+.|+-.+-..+=.++.+.- +...++|-++--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33344444555667788888888888887653 3344555566667788887777666667777653 446788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcch
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~ 330 (510)
-|.-.|..++|.+.|.+-...+.. =...|...-..|+-.|..|+|...+...-+. |. .-+..| +---|.+.+++
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHHhccH
Confidence 888889999999998876654321 2357777888888888889988888776652 21 112233 23356778888
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC--CCCc----CHHHHHHHHHHHHcCCChhHHHH
Q 010459 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA--KVRW----NVTTANIILLAYLKMKDFKHLRV 404 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~ 404 (510)
..|.+.+.+.....+.++...+-+.......+.+.+|...|+..... .+.+ -.-+++.|-.+|.+.+++++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 89999999888999999999888888888888888999888876621 1111 23456777778889999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
.|++.... .+-+..|+.++--.+...|+++.|++.|.+.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99888753 1236677777777788888999999988876
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.5e-06 Score=81.03 Aligned_cols=285 Identities=14% Similarity=0.028 Sum_probs=223.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 213 (510)
+..-+....-.-.+-+-..+++.+..++++...+.. +++...+..=|.++...|+..+-..+=.+|++.- +-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 344555666667777778899999999999998764 5667777777888999999888887777887764 33678999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHh
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~ 291 (510)
++-.-|.-.|+.++|.+.|.+..... +.-...|-..-..|+-.|..|+|+..+...-+. |.. -+.-|.. --|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlg--mey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLG--MEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHH--HHHHH
Confidence 99999999999999999999877543 234568999999999999999999988766542 321 1233433 34778
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-------cCCchHHHHHHHHHhhhhccc
Q 010459 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-------IGRTELVWCLRLLSHACLLSH 364 (510)
Q Consensus 292 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~ 364 (510)
.+..+.|.+.|.+..... +.|+.+.+-+--..-+.+.+.+|...|+..... ......+|+.+..+|.+.+..
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999887543 557778888877777888899999888766511 112355678888899999999
Q ss_pred ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 428 (510)
++|+..|++......+ |..++.++.-.|...|.++.|.+.|.+..- +.||..+...++..+
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998887665 889999999999999999999999998774 679998888887743
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=6.6e-05 Score=73.56 Aligned_cols=368 Identities=9% Similarity=0.066 Sum_probs=206.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA------LKPSLEIYN 178 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~ 178 (510)
.|.-.+....+.+-++-+..++++..+ .++..-+-.|..+++.+++++|-+.+....... -+.+...|+
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 344555555556666666666665542 333445666677777777777777776665321 123445566
Q ss_pred HHHHHHHhcCChH---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 179 SIIHGYSKIGKFN---EALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 179 ~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
-+-+..+++-+.- ...++++.+... -|| ...|++|.+-|.+.|.++.|..+|++..+. ..++.-|+.+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence 6665555544322 223334443322 233 346788999999999999999999887654 3445555555555
Q ss_pred HHHcCC----------------------HHHHHHHHHHHHHCCC-----------ccCHHHHHHHHHHHHhcCChhHHHH
Q 010459 254 FACAGL----------------------LKRMEGTYKSMLTKRM-----------HLRSSTMVAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 254 ~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~g~~~~a~~ 300 (510)
|++-.. ++-.+.-|+.+...+. +-+..+|..-+. ...|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence 554221 1222223333322210 012222322222 22455666666
Q ss_pred HHHHHHhcCCCC------CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHH
Q 010459 301 FYKRLLNSRTPL------KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSV 370 (510)
Q Consensus 301 ~~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 370 (510)
.+.+.++. +.| -...+..+.+.|-.+|+++.|+.++.+....+-+. ..+|..-...-.++.+.+.|+++
T Consensus 369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666643 122 12456778888888888888888887776555443 46677777777777778888777
Q ss_pred HHHHHHCCCC-----------c------CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH--HHHHHHHhhhhc
Q 010459 371 VREMESAKVR-----------W------NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV--TIGILYDARRIG 431 (510)
Q Consensus 371 ~~~m~~~g~~-----------p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~ 431 (510)
.+......-. + ....|...++---..|-++....+++.+.+..+..... .|..++. .+
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---eh 524 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---EH 524 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hh
Confidence 6655432111 1 12345555555556778888888888888755433322 2433333 23
Q ss_pred CccchHHHHHHHcCCccccc-cccChhHHHHHhhc---cCchhHHHHHHhhcCCCCCCCCc
Q 010459 432 FDGTGALEMWKRIGFLFKTV-EINTDPLVLAVYGK---GHFLRYCEEVYSSLEPYSREKKR 488 (510)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 488 (510)
.-++++.+.+++=...-..| -...|+.-+.-+.+ .-.++.|..+|++..+ |.+|..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 34677777777643332222 22334444333322 3467788888888877 566663
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=1.3e-06 Score=86.04 Aligned_cols=240 Identities=14% Similarity=0.130 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-C
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGF-----AL-KPSLEI-YNSIIHGYSKIGKFNEALLFLNEMKEM-----NL-S 206 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~ 206 (510)
.+...|..+|...|+++.|+.++....+. |. .|.+.+ .+.+-..|...+++++|..+|+++..- |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445777777777777777777765543 10 122222 223445666667777777777666431 11 1
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 010459 207 P-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGC-SPDH-ITYNLLIQEFACAGLLKRMEGTYKSMLTK---RM 275 (510)
Q Consensus 207 p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 275 (510)
| -..|++.|-..|.+.|++++|...+++..+ .|. .|.+ ..++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 123445555566777777666665555432 111 1122 12344555566666666666666543321 11
Q ss_pred ccC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459 276 HLR----SSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347 (510)
Q Consensus 276 ~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
.++ ..+++.|-..|...|++++|+++|+..++. +...+.. .
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~-------------------------------~ 408 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG-------------------------------V 408 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh-------------------------------h
Confidence 112 245666666666666666666666665532 1111111 0
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHH----HHHCCC-CcC-HHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVRE----MESAKV-RWN-VTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
....+-+...|.+.+..++|.++|.+ |...|+ .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 12233334444444444555555543 233332 233 4678899999999999999999988765
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=2.9e-06 Score=79.70 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 255 (510)
.|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|...|++..+.. +-+..+|..+...+.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444555555555555555555555553321 34555555555555555555555555555432 123444555555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 010459 256 CAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~ 273 (510)
..|++++|.+.|+...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 72
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=3.6e-09 Score=62.78 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 377 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
+|+.||..|||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999998884
No 73
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=3.5e-09 Score=62.86 Aligned_cols=30 Identities=40% Similarity=0.852 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
.||..|||+||++|++.|++++|.++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 334444444444444444444444443333
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.83 E-value=1.9e-06 Score=84.84 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhC-----C--CC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-----NL-SPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLD-----G--CS 241 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~ 241 (510)
+...+...|...|+++.|..++++..+. |. .|...+. +.+-..|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444666666777777777666665443 21 1222222 23445556666666666666665421 1 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-ccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC
Q 010459 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRM-HLRS-STMVAILDAYMNFGMLDKMEKFYKRLLNS---RTP 311 (510)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~ 311 (510)
.-..+++.|-..|.+.|++++|...++...+ .|. .|.. .-++.+...|+..+++++|..++....+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1233444455556666666666555544321 111 1121 23444555555666666666666544321 111
Q ss_pred CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC----C--CCc-CHH
Q 010459 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA----K--VRW-NVT 384 (510)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p-~~~ 384 (510)
++. .....+++.+...|...|++++|.++|++.... + ..+ ...
T Consensus 361 ~~~------------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 361 EDN------------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred ccc------------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 111 011233444444455555555555555544322 1 122 245
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhhhh----CCC-CCCH-HHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 385 TANIILLAYLKMKDFKHLRVLLSELPT----RHV-KPDI-VTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
.++-|-.+|.+.++.++|.++|.+-.. .|. .|+. .+|..|...|...|++++|.++.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 677888899999999999999987542 332 2332 56778888899999999998887665
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=5.9e-06 Score=77.68 Aligned_cols=218 Identities=10% Similarity=-0.021 Sum_probs=152.6
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 188 GKFNEALLFLNEMKEMN-LSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
+..+.++.-+.++.... ..|+ ...|..+-..|.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777776542 2222 3567788888999999999999999998875 457889999999999999999999
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
+.|+...+.... +..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999876432 46778888888999999999999999998754 433322222223345567888888875544332
Q ss_pred CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC---C--Cc-CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC
Q 010459 345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAK---V--RW-NVTTANIILLAYLKMKDFKHLRVLLSELPTRH 413 (510)
Q Consensus 345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 413 (510)
.++ .|.. .......|+...+ +.+..+.+.- + .| ....|..+...+.+.|+.++|...|++..+.+
T Consensus 196 ~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222 2321 2223334555444 3455544321 1 11 23578888889999999999999999998754
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=9.9e-05 Score=71.73 Aligned_cols=374 Identities=13% Similarity=0.066 Sum_probs=192.3
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--H
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI--IHGY--S 185 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--i~~~--~ 185 (510)
++.+...|++++|.+.-..+.. +.+-|...+..=+-+..+.+++++|+.+.+.-. -..+++.. =.+| -
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHH
Confidence 3445556666666666666652 334445555555666666666666664433211 11122222 2233 3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------------------
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC------------------------ 240 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------ 240 (510)
+.+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566666666665 22222 22444445556666666666666666643321
Q ss_pred ----CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCC-------------CccCH-HHHHHHHHHHHhcCChhHHH
Q 010459 241 ----SPDHITYNLLI---QEFACAGLLKRMEGTYKSMLTKR-------------MHLRS-STMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 241 ----~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~t~~~ll~~~~~~g~~~~a~ 299 (510)
.| ..+|..+- -.+...|++.+|+++++.....+ +.-+. ..-.-+.-++-..|+.++|.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11 22333332 23556788888888887762211 11011 11222344555678888999
Q ss_pred HHHHHHHhcCCCCCHHH----HHHHHHHHHhhcchh------------------------------------------HH
Q 010459 300 KFYKRLLNSRTPLKEDL----VRKLAEVYIKNYMFS------------------------------------------RL 333 (510)
Q Consensus 300 ~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~------------------------------------------~a 333 (510)
+++...++... +|... .|.|+.+-....-++ ..
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 98888877652 33211 122222111111111 00
Q ss_pred HHHHHHHHhhcCCc-hHHHHHHHHHhhhh-c-ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHH---
Q 010459 334 DDLGDDLASRIGRT-ELVWCLRLLSHACL-L-SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS--- 407 (510)
Q Consensus 334 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 407 (510)
..+.+.....++.. ...+.+++...... . ....+.+++....+....-...+.-.++......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 00000011112211 23333333322222 2 245566666666555433234455566677788999999999999
Q ss_pred -----hhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcC------CccccccccChhHHHHHhhccCchhHHHHHH
Q 010459 408 -----ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG------FLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476 (510)
Q Consensus 408 -----~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 476 (510)
...+.+-.|..+ .+++..+.+.++.+.|..++.+.. ..+...-..++.-....=-++|..++|..++
T Consensus 404 ~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 566555555544 445555556655555555444331 1111111112222233345679999999999
Q ss_pred hhcCCCCCCCCcccHHHHHHHHHhc
Q 010459 477 SSLEPYSREKKRWTYQNLIDLVIKH 501 (510)
Q Consensus 477 ~~m~~~g~~p~~~~~~~li~~~~~~ 501 (510)
+++.+. .++|..+...++.+|++.
T Consensus 482 eel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 482 EELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHh-CCchHHHHHHHHHHHHhc
Confidence 999984 355667778899998875
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=7.6e-05 Score=73.26 Aligned_cols=360 Identities=13% Similarity=0.043 Sum_probs=198.4
Q ss_pred HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010459 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 193 (510)
...|+.++|.+..+.-. .+-..+.+.|..+--.+-...++++|+..|....+.+ +-|...|.-+--.-++.++++..
T Consensus 52 ~~lg~~~ea~~~vr~gl--r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGL--RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHh--ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 34566777776666444 2344556677777666666777788888777777664 33566677666666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHH
Q 010459 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLI------QEFACAGLLKRMEGT 266 (510)
Q Consensus 194 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~ 266 (510)
.....+..+... -....|..+..++.-.|+...|..++++..+.. -.|+...+.-.. .-..++|..++|++.
T Consensus 129 ~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776666655432 245566677777777777777777777766543 134444443322 233455666666666
Q ss_pred HHHHHHCCCccCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhh-cchhHHHHHHHHHHhh
Q 010459 267 YKSMLTKRMHLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR-KLAEVYIKN-YMFSRLDDLGDDLASR 343 (510)
Q Consensus 267 ~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~-~~~~~a~~~~~~~~~~ 343 (510)
+..-... + .|...+ .+-...+.+.+++++|..++..++... ||..-|. -+..++.+- +.......++......
T Consensus 208 L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 208 LLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5544322 1 122222 223445566677777777777776654 4444443 333333322 1222222333333322
Q ss_pred cCCc--------------------------------hHHHHHHHHHhhhhcccc----cHHHHHHHHHHCC---------
Q 010459 344 IGRT--------------------------------ELVWCLRLLSHACLLSHR----GIDSVVREMESAK--------- 378 (510)
Q Consensus 344 ~~~~--------------------------------~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~g--------- 378 (510)
.++. +.++..+.+.|-.....+ -+.++...+...|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 2211 222222222222211111 0111111121111
Q ss_pred -CCcCHHHHH--HHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcCCcccccccc
Q 010459 379 -VRWNVTTAN--IILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN 454 (510)
Q Consensus 379 -~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (510)
-+|....|+ -++..|-+.|+++.|..+.+...++ .|+. .-|..=-+.+...|++++|..++++....+. ++..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHH
Confidence 145555554 4566788899999999999988865 4554 3344444567788899999999888744421 2222
Q ss_pred ChhHHHHHhhccCchhHHHHHHhhcCCCCC
Q 010459 455 TDPLVLAVYGKGHFLRYCEEVYSSLEPYSR 484 (510)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 484 (510)
..+--..-..++.++++|.++....-..|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 221222234468888899888877776554
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=2.3e-05 Score=67.24 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
..-|--.|...|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+-|++....... +..+.|..-..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4446667888888888888888888774 225677888888888888888888888888775433 56677778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 010459 222 YKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 300 (510)
.|++++|...|++....-.- --..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 88888888888887754111 12456777777778888888888888887766432 34566777788888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG 345 (510)
Q Consensus 301 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.++.....+. ++..+.-..|..-...|+-+.+.+.-.++....+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8887776664 7777776667766667777666666555544433
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=0.00025 Score=66.08 Aligned_cols=304 Identities=9% Similarity=-0.048 Sum_probs=200.1
Q ss_pred CCChhhHHHHHHHHHh--cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 010459 100 DWTKDHFWAVIRFLKN--SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EI 176 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~ 176 (510)
.|+-.+.+.-+.++++ .++...|.+.+-.......++-|+....++.+.+...|+.++|+..|++.... .|+. ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3444444444555544 46666777777666665677888999999999999999999999999988744 2322 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 256 (510)
...-.-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+-++-.+.. +.++..+-.--..+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 2222334467888888888877775532 1233334333444455678888888888877543 3344444444456778
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-hhcchhHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYI-KNYMFSRLD 334 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~ 334 (510)
.|++++|.-.|+..+... +-+...|..|+..|...|...+|.-+-....+. ++-+..+...+- ..+. ....-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999998877542 126789999999999999999987766655432 122333332221 1111 112235566
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
++.+.-....+.-....+.+...+...|..+++..+++.-... .||....+.|-+.+.-.+.+++|+..|.....
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6655555555555666666777777778888888888776653 56888888888888888888888888877665
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=0.0002 Score=65.36 Aligned_cols=357 Identities=13% Similarity=0.046 Sum_probs=205.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 188 (510)
+...+.+.|++++|...+..+.+ .-.|+...+-.|..++.-.|.+.+|..+-...+ .+...-..|...-.+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 34556788999999999998874 556777777777777777799999988866543 34444455556666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL-IQEFACAGLLKRMEGTY 267 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 267 (510)
+-++-..+-+.+... ..---+|.......-.+.+|..++.+.... .|+-...|.- .-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 777766666665431 122234444444445688899999888765 4555555543 34667777778888887
Q ss_pred HHHHHCCCccCH-HHHHHHHHHHHh----cCChhHH------------HHHHHHHHhcCC------C------CC-----
Q 010459 268 KSMLTKRMHLRS-STMVAILDAYMN----FGMLDKM------------EKFYKRLLNSRT------P------LK----- 313 (510)
Q Consensus 268 ~~m~~~g~~p~~-~t~~~ll~~~~~----~g~~~~a------------~~~~~~m~~~~~------~------~~----- 313 (510)
+-..+. -||+ ...+ +.+|.. .|+..+. ....+.+.++++ + |.
T Consensus 209 ~vYL~q--~pdStiA~N--Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKN--LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHHHHh--CCCcHHHHH--HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 766654 2332 2222 223321 1211111 111122222211 0 00
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-------ccccHHHHHHHHHHCCCC------
Q 010459 314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-------SHRGIDSVVREMESAKVR------ 380 (510)
Q Consensus 314 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~------ 380 (510)
+..--.|+--|.+.+++.+|..+.+++. +..+.-|-.-...++..| +.+-|.+.|+-.-+.+..
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 1111223444666777777777744433 222222222112222222 222233333333222221
Q ss_pred ------------------------------cCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH-hhh
Q 010459 381 ------------------------------WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD-ARR 429 (510)
Q Consensus 381 ------------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-~~~ 429 (510)
-|...+ .+..+++..|.+.+|.++|-+.....+ -|..+|.+++. +|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHH
Confidence 112222 356678888999999999987765433 35667776665 778
Q ss_pred hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHH
Q 010459 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ 492 (510)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 492 (510)
+.+.++.|.+++-++...+. .......+.+-|-+++.+--|.+.|+.+.. .+|++..|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e--~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSE--RFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hcCCchHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 89999999998877633211 111223345678899999999999998887 577766664
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.00016 Score=67.31 Aligned_cols=299 Identities=11% Similarity=0.005 Sum_probs=190.5
Q ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 010459 137 INEFNSQKIIGMLCEE--GLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD-TY 212 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~ 212 (510)
|+..+...-|.+++.+ ++-..|...+-.+... -+.-|+.....+...+...|+.++|...|++.+.. .|+.. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 4444445556666655 4444444444333322 24557788888999999999999999999887664 23322 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 292 (510)
....-.+.+.|+.+....+...+-... .-+...|-.-....-..++++.|+.+-++-++.... +...|..=-..+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 222333456777887777777665332 234444544445555677888898888887765322 334444444667778
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHH-HHhh-hhcccccHHHH
Q 010459 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL-LSHA-CLLSHRGIDSV 370 (510)
Q Consensus 293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~ 370 (510)
+++++|.--|+..+... +.+...|.-|+..|...|.+.+|.-.........+.+..+.+.+. ..+. ...-.++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 89999988888776543 457788999999999999999888776666555555555544432 1111 11122566666
Q ss_pred HHHHHHCCCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 371 VREMESAKVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 371 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
++.-.+. .|+- ..-+.+...|...|..++++.+++.-.. ..||..--+.|-+.+.....+++|++.|...
T Consensus 427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6655443 3432 3445555677788888888888887765 3578777777777777777778887777665
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=9.4e-05 Score=75.96 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=127.4
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
||+..+..++++...+-+.+-.++++.+.-... +.-+...-|.||-.-.|. +..+..+..+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 444555666777777777777777666553111 111222233333333332 4445555555554332 122 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
...+..++-+++|..+|+.. ..+....+.||. ..+.++.|.+.-++.. ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 23344556677777777764 234555566665 3455666666555544 345788888888888888
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
.+|.+-|-+.. |+..|.-+++.+.+.|.+++-...+....+..-+|.+. +.||-+|++.+++.+.+.+
T Consensus 1121 ~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 88887764322 67788899999999999999888887777766666543 5788889998888777766
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=0.00033 Score=68.99 Aligned_cols=365 Identities=10% Similarity=0.038 Sum_probs=216.0
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
+.+.|..+--.+....++++|.+.|..... --+-|...|--+--.-++.|+++..........+.. ......|....
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 445666665556667889999999998763 334466677766666677788888887777777553 23567888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH------HHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQA------YGKYKMYDEIDMCLKMMKLDGCSPDHITY-NLLIQE 253 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~------~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~ 253 (510)
.++.-.|+...|.++.++..+.- -.|+...|...... ..+.|..++|.+.+...... ..|-..+ -+-..-
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 88888999999999998886654 34666666433332 23456666666666554422 1222222 234455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-hcCChhHHH-HHH-----------------------------
Q 010459 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM-NFGMLDKME-KFY----------------------------- 302 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~----------------------------- 302 (510)
+.+.+++++|..++..+... .||..-|.-.+..+. +..+.-++. .+|
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 67777788888887777766 345544444333332 222222222 333
Q ss_pred -----HHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH---------------hhcCCchHHHHH--HHHHhhh
Q 010459 303 -----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA---------------SRIGRTELVWCL--RLLSHAC 360 (510)
Q Consensus 303 -----~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~--li~~~~~ 360 (510)
..+.+.|+++ ++..+...|-.....+-..++.-.+. ...++....|+. ++.-+-.
T Consensus 307 vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 3333444433 22333333322111111111111111 112556677766 5677888
Q ss_pred hcccccHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHH
Q 010459 361 LLSHRGIDSVVREMESAKVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439 (510)
Q Consensus 361 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 439 (510)
.|+.+.|....+....+ .|+. ..|..=...+.+.|..++|...+++..+.. .||...=+--..-..++.+.++|.+
T Consensus 384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 89999999999988875 3433 344444567899999999999999988643 2444332222223445678899988
Q ss_pred HHHHcCCccc--cccccChhHHH------HHhhccCchhHHHHHHhhc
Q 010459 440 MWKRIGFLFK--TVEINTDPLVL------AVYGKGHFLRYCEEVYSSL 479 (510)
Q Consensus 440 ~~~~~~~~~~--~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m 479 (510)
+.......+. ..+..-..++| .+|.+.|++..|.+=|..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8877655433 11112222332 4678888888877655443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=6.1e-05 Score=73.21 Aligned_cols=157 Identities=9% Similarity=0.027 Sum_probs=111.8
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKI 187 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 187 (510)
.+...|++++|.+.++.... ..+.|...+.. +.......+..+.+.+.++.. ....|+ ...+..+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLD--DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 45678999999999998875 33444445542 222222345666666666552 112333 34445666788899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 010459 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDH--ITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~ 264 (510)
|++++|.+.+++..+... .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999988653 3567788899999999999999999999876532 2332 34567888899999999999
Q ss_pred HHHHHHHHC
Q 010459 265 GTYKSMLTK 273 (510)
Q Consensus 265 ~~~~~m~~~ 273 (510)
.++++....
T Consensus 207 ~~~~~~~~~ 215 (355)
T cd05804 207 AIYDTHIAP 215 (355)
T ss_pred HHHHHHhcc
Confidence 999998644
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=2.7e-06 Score=78.98 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=120.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 231 (510)
.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .+.... -.|.......+...+....+-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 355666554444 221111112334455566666666655433 222222 255555554444444333444444444
Q ss_pred HHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459 232 LKMMKLDGCSPDHITYN-LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 310 (510)
+++.......++..++. .....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+..
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 44433322222222222 2223344567777777766432 244555566677777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390 (510)
Q Consensus 311 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 390 (510)
.| .+...|..++.. .+.......+|..+|+++.+. ..++..+.|.+.
T Consensus 162 -eD-~~l~qLa~awv~------------------------------l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 162 -ED-SILTQLAEAWVN------------------------------LATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp -CC-HHHHHHHHHHHH------------------------------HHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred -Cc-HHHHHHHHHHHH------------------------------HHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 22 222223332221 111112356677777776554 455677777777
Q ss_pred HHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc-chHHHHHHHcC
Q 010459 391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG-TGALEMWKRIG 445 (510)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~~~~~~~~ 445 (510)
.++...|++++|.+++.+..+.. .-+..|...++-+....|+. +.+.+++.++.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77777777777777777765432 11345555555555555555 44555666653
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=1.8e-06 Score=80.11 Aligned_cols=208 Identities=13% Similarity=0.010 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAY 219 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~ 219 (510)
...-+..+|...|+.+.++ .++.+.. .|.......+...+...++-+.++.-+++....+..+ +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444566677777766443 3343332 5555555444433333344445555444443333332 222223333455
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCCh
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGML 295 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~ 295 (510)
...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 5677777777777542 355566667777778888888888888877543 23 333334443333 3357
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc
Q 010459 296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362 (510)
Q Consensus 296 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 362 (510)
.+|.-+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.....+.++.+...++......|
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 7777788776543 35666666666666666666666666544443333333333333333333333
No 87
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.00077 Score=65.10 Aligned_cols=131 Identities=10% Similarity=-0.021 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHh
Q 010459 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358 (510)
Q Consensus 280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 358 (510)
.+|...++.-.+..-+..|+.+|.+..+.+..+ ++.+.++++.-||.. +..-|.++|+-=....+.++.--...+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 466777777777778888888888888877666 777888888887754 456677776665666666666667777777
Q ss_pred hhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 359 ACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 359 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
...++-..+..+|++....++.|| ...|..+|.-=..-|+...+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777888888888888888866554 36788888888888888888888777753
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=9.2e-05 Score=63.66 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 255 (510)
+..-|--+|.+.|+...|..-+++.++.... +..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3444555666666666666666666665432 44566666666666666666666666665543 234455555555566
Q ss_pred HcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 256 CAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
..|++++|...|++......-| -..||..+.-+..+.|+.+.|++.|++.++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 6666666666666655432111 2345555555555666666666666665554
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=2.5e-05 Score=77.37 Aligned_cols=347 Identities=14% Similarity=0.076 Sum_probs=202.1
Q ss_pred HHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH
Q 010459 66 LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI 145 (510)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (510)
..|--|.....|++++..-+..+.+...-+ -.+.++++...|+-++|-++-.. .|- --+-
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~ekl----------k~sy~q~l~dt~qd~ka~elk~s----dgd------~laa 621 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKL----------KRSYLQALMDTGQDEKAAELKES----DGD------GLAA 621 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHH----------HHHHHHHHHhcCchhhhhhhccc----cCc------cHHH
Confidence 344456666777777777665555543322 23455566666666655444210 111 1234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------------ChHHHHHHHHHHHHC---------
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-------------KFNEALLFLNEMKEM--------- 203 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~--------- 203 (510)
|..|.+.|.+..|.+.-..=.. +..|......+..++.+.. ++++|++.|++=-..
T Consensus 622 iqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 622 IQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 6667777776666544321110 1223333333333333333 333444433321000
Q ss_pred CCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459 204 NLSPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282 (510)
Q Consensus 204 g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 282 (510)
.++..+++. ..--..+...|+++.|..-|-+.. ..-..|.+....+.|.+|+.+++.++.... -+--|
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy 768 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYY 768 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccc
Confidence 010011111 111122233455555554443322 123346677788899999999998887643 23357
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 362 (510)
.-+.+-|+..|+++.|+++|-+. ..++--|.+|.++|.+..|.++...+... ......|-+-..-.-.+|
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDLDEHG 838 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhhc
Confidence 77889999999999999998543 23566789999999999998886554322 222344444445556677
Q ss_pred ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH--HHHHHHHHhhhhcCccchHHHH
Q 010459 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI--VTIGILYDARRIGFDGTGALEM 440 (510)
Q Consensus 363 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~ 440 (510)
++.+|.+++-.+.. |+ ..|..|-+.|..++.+++..+-- |+. .|-..+-.-+...|++..|.+-
T Consensus 839 kf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred chhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 77777777655433 44 35778899999988888776543 232 3444455567778899999888
Q ss_pred HHHcCCccccccccChhHHHHHhhccCchhHHHHHHhh
Q 010459 441 WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478 (510)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (510)
|-+. ..|.+.+++|...+.+++|.++-+.
T Consensus 905 flea---------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 905 FLEA---------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHhh---------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 7655 4567788999999999999888754
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.50 E-value=0.00096 Score=67.13 Aligned_cols=378 Identities=11% Similarity=-0.053 Sum_probs=209.4
Q ss_pred hccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010459 96 QHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE 175 (510)
Q Consensus 96 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 175 (510)
.....+++..|..+.-++...|+++.+-+.|+... .+.--....|+.+-..|..+|.-..|..+.+.-....-.|+..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33445788888888888899999999999999876 4555667788888888888888888888887665443224333
Q ss_pred HHHHHHH-HHH-hcCChHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhC
Q 010459 176 IYNSIIH-GYS-KIGKFNEALLFLNEMKEM--N--LSPQSDTYDGLIQAYGKY-----------KMYDEIDMCLKMMKLD 238 (510)
Q Consensus 176 ~~~~li~-~~~-~~g~~~~a~~~~~~m~~~--g--~~p~~~t~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 238 (510)
+--.|+. .|. +-+..++++.+-.+.... + -......|-.+--+|... ....++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 3222222 222 234445554444443331 1 011223333333333221 1233444455554433
Q ss_pred C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCC------
Q 010459 239 G-CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRT------ 310 (510)
Q Consensus 239 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~------ 310 (510)
+ -.|++..|-++ -|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.... .|.
T Consensus 474 d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 2 12333222222 2344445555555555555443333444444444444444444444444443321 111
Q ss_pred ------------CCCHHHHHHHHHHHH----------h-------------hcchhHHH-------HH------------
Q 010459 311 ------------PLKEDLVRKLAEVYI----------K-------------NYMFSRLD-------DL------------ 336 (510)
Q Consensus 311 ------------~~~~~~~~~li~~~~----------~-------------~~~~~~a~-------~~------------ 336 (510)
.--..|...++..+- + .++..++. ..
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 000011111111111 0 00000000 00
Q ss_pred -HHHHHhhcCCc------hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459 337 -GDDLASRIGRT------ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409 (510)
Q Consensus 337 -~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (510)
...+...+.++ ...|......+...+..++|...+.+.....+- ....|...-..+...|.+++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01111111122 345666777788888888888777766655322 4556666666788899999999999888
Q ss_pred hhCCCCCCH-HHHHHHHHhhhhcCccchHHH--HHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 410 PTRHVKPDI-VTIGILYDARRIGFDGTGALE--MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 410 ~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
.. +.|+. ....++-..+.+.|+..-|.. ++..+... .+.+...|-.+...+-+.|+.+.|.+-|....+
T Consensus 711 l~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred Hh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 75 46765 456667778888888877777 77776444 334667788888999999999999998876655
No 91
>PLN02789 farnesyltranstransferase
Probab=98.49 E-value=0.00025 Score=66.88 Aligned_cols=222 Identities=10% Similarity=-0.034 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
+++.+-..+.+.++.++|+.+.+++.+... -+..+|+.--..+...| +++++++.++++.+...+ +..+|+..-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 344555555666777777777777765531 13445655555555555 467777777777665443 444565544444
Q ss_pred HccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 220 GKYKMY--DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 220 ~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
.+.|+. +++...++++.+.. +.|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+.+...
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence 455542 45666666666554 346667776666666667777777777777666544 4444444333322221100
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc----ccccHHHHHHH
Q 010459 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVRE 373 (510)
Q Consensus 298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~ 373 (510)
+. ....++............+.+..+|+.+...+...+ ...+|.+.+.+
T Consensus 194 -----------~~----------------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 194 -----------GL----------------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred -----------cc----------------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 00 001123334444455556677777777766665532 23457777777
Q ss_pred HHHCCCCcCHHHHHHHHHHHHc
Q 010459 374 MESAKVRWNVTTANIILLAYLK 395 (510)
Q Consensus 374 m~~~g~~p~~~~~~~li~~~~~ 395 (510)
....++. +......|++.|+.
T Consensus 247 ~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 247 VLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred hhcccCC-cHHHHHHHHHHHHh
Confidence 6664433 56667777777765
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00053 Score=75.62 Aligned_cols=333 Identities=9% Similarity=-0.030 Sum_probs=197.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN--L----SPQS--DTYDGLIQAYG 220 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~p~~--~t~~~li~~~~ 220 (510)
....|+++.+...++.++......+..........+...|++++|...+....+.- . .|.. .....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34457777777777665322111222222334445567889999999988775421 1 1111 12222334456
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHHh
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM-HLRSSTMVAILDAYMN 291 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~ 291 (510)
..|++++|...+++..+.-...+. ..++.+-..+...|++++|...+++.... |- .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111221 23455556677899999999999887642 11 1112345566677888
Q ss_pred cCChhHHHHHHHHHHh----cCCC--C-CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC---C--chHHHHHHHHHhh
Q 010459 292 FGMLDKMEKFYKRLLN----SRTP--L-KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG---R--TELVWCLRLLSHA 359 (510)
Q Consensus 292 ~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~li~~~~ 359 (510)
.|++++|.+.+++..+ .+.. + ....+..+...+...|++++|............ + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887664 2221 1 123344556667778999999888766543211 1 1333444556777
Q ss_pred hhcccccHHHHHHHHHHCCCC-cCHHHH-----HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH---HHHHHHHhhhh
Q 010459 360 CLLSHRGIDSVVREMESAKVR-WNVTTA-----NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV---TIGILYDARRI 430 (510)
Q Consensus 360 ~~~~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~ 430 (510)
..|+.++|.+.+++....... .....+ ...+..+...|+.+.|...+............. .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 889999998888877542110 011111 112244556889999999987765422111111 12334446777
Q ss_pred cCccchHHHHHHHcCCccccccc-----cChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 431 GFDGTGALEMWKRIGFLFKTVEI-----NTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
.|+.++|...+++........+. .....+..++.+.|+.++|...+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899998888876332111111 1223334567788999999888877765
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=5.5e-05 Score=67.28 Aligned_cols=302 Identities=13% Similarity=0.111 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG-LIQAY 219 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~ 219 (510)
-+++.+.-+.+..++.+|++++..-.+.. +.+....+.|-.+|-...++..|-..++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 35556666667777777777776665542 225666667777777777777777777776442 344444432 22334
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF--ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
.+.+.+.+|+++...|... ++...-..-+.+. -..+++..+..++++....| +..+.+..--...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 4566677777777666531 2222211112221 23456666666666554332 22233222223345677777
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459 298 MEKFYKRLLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES 376 (510)
Q Consensus 298 a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 376 (510)
|.+-|....+ .|..| ...||.-+..|. .++.+.|.+....+..+..++-.-++. -|..
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgI-------------------Gm~t 221 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGI-------------------GMTT 221 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCc-------------------ccee
Confidence 7777776665 34433 344554444442 334444444443333222211000000 0000
Q ss_pred CCCCcC---------------HHHHHHHHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHH--HHHHhhhhcCccchHH
Q 010459 377 AKVRWN---------------VTTANIILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIG--ILYDARRIGFDGTGAL 438 (510)
Q Consensus 377 ~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~--~li~~~~~~~~~~~a~ 438 (510)
.| || +..+|.-..-+.+.|+.+.|.+-+-.|. +..-..|++|.. ++.++-++.++.-+-+
T Consensus 222 eg--iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 222 EG--IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKL 299 (459)
T ss_pred cc--CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHH
Confidence 00 11 1122222233456777777777777775 322334444433 3333333233222223
Q ss_pred HHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhh
Q 010459 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478 (510)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (510)
.++-.+ .|....++..++-.|+|..-++.|..++-+
T Consensus 300 qFLL~~----nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQ----NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhc----CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 333222 123445666666677777777777666543
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.0013 Score=60.11 Aligned_cols=294 Identities=10% Similarity=0.011 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII-HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 222 (510)
+|.++.--.-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.+++.-.++.- .-+....|.......+.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhh
Confidence 3444433445678888888888755 45555555444 35566666777777777765542 22233333333222221
Q ss_pred --CCH---------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 223 --KMY---------------------------------DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 223 --g~~---------------------------------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
|+. +.|++++-.+.+. .| ..--.++--|.+.++..+|..+.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHH
Confidence 211 1222222222110 11 22233455688899999999988
Q ss_pred HHHHHCCCccCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhhcchhHHHHHHHHHH
Q 010459 268 KSMLTKRMHLRSSTMVAILDAY-----MNFGMLDKMEKFYKRLLNSRTPLKEDLV-RKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
+++.- ..|-.+..-.+..+- .....+.-|.+.|...-.++...|.... .++...+.-..+++++......+.
T Consensus 309 Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 309 KDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred hhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77642 233333333333222 1122345577777655555554443322 344455555667888888888888
Q ss_pred hhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCCHHH
Q 010459 342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL-AYLKMKDFKHLRVLLSELPTRHVKPDIVT 420 (510)
Q Consensus 342 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 420 (510)
+....+..--..+..+++..|...+|.++|-++....++ |..+|-+++. .|.++++++.|+.++-.+.. ..+.++
T Consensus 387 sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fs 462 (557)
T KOG3785|consen 387 SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFS 462 (557)
T ss_pred HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHH
Confidence 777777666667888999999999999999988776666 7778776654 88999999999988766653 235555
Q ss_pred HHHHHH-hhhhcCccchHHHHHHHcCCcccc
Q 010459 421 IGILYD-ARRIGFDGTGALEMWKRIGFLFKT 450 (510)
Q Consensus 421 ~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~ 450 (510)
...+|. -|.+.+.+--|-+.|+.+...++.
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 555554 577777777777777777554433
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=0.00012 Score=77.75 Aligned_cols=182 Identities=8% Similarity=-0.008 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 326 (510)
|.++++.-..-|.-+...++|++..+..- ....|..|...|.+.+..++|-++++.|.+.-- -...+|...++.+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhc
Confidence 44444444444444444444444433210 112344444444444444444444444443211 233344444444444
Q ss_pred hcchhHHHHHHHHHHhhcCC--chHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHH
Q 010459 327 NYMFSRLDDLGDDLASRIGR--TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 404 (510)
.+.-+.|..++.......++ ......-.+..-.++|+.+.+..+|+......++ -...|+..|+.=.++|+.+.+..
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHH
Confidence 44444444444333332222 2222333334445556666666666666655443 45567777777777777777777
Q ss_pred HHHhhhhCCCCCCH--HHHHHHHHhhhhcC
Q 010459 405 LLSELPTRHVKPDI--VTIGILYDARRIGF 432 (510)
Q Consensus 405 ~~~~m~~~g~~p~~--~t~~~li~~~~~~~ 432 (510)
+|++....++.|-. +.|.-.+..-...|
T Consensus 1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 77777666665543 33444444333333
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=0.00018 Score=76.58 Aligned_cols=224 Identities=11% Similarity=0.021 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 247 (510)
+...|-.-|.-..+.++.++|.+++++.+.. +.+ -...|.++++.-..-|.-+...++|++..+.- --...|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4577989999999999999999999988653 211 12367778877777788888999999998752 234568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIK 326 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 326 (510)
..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.--. --.......+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 889999999999999999999998652 235678888999999999999999999988865211 123445666777788
Q ss_pred hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChh
Q 010459 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV--TTANIILLAYLKMKDFK 400 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~ 400 (510)
+|+-++++.+|+......++....|+..|..-.++|+.+.++.+|++....++.|-. ..|.-.+.-=-+.|+-.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999999999999999999999999999999999999999999999887643 33444443333444433
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=0.0011 Score=73.07 Aligned_cols=332 Identities=11% Similarity=-0.014 Sum_probs=198.0
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCH--HHHHHHHHHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL------KPSL--EIYNSIIHGY 184 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~ 184 (510)
....|+.+.+.++++.+.. .....+..........+...|++++|...++.....-- .+.. .....+-..+
T Consensus 384 l~~~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPW-EVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCH-HHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445666665555554321 11111222233444555677999999999887754310 1111 1122223445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC---SPD--HITYNLLIQEFA 255 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~~~ 255 (510)
...|++++|...+++..+.-...+. .+.+.+...+...|++++|...+++.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987663211121 3445666677789999999999888764210 111 234455566788
Q ss_pred HcCCHHHHHHHHHHHHH----CCCc--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC--CHHHHHHHHHHH
Q 010459 256 CAGLLKRMEGTYKSMLT----KRMH--L-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPL--KEDLVRKLAEVY 324 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~ 324 (510)
..|++++|...+++... .+.. | ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999999887654 2221 1 2233445556677789999999998887642 1112 223344456677
Q ss_pred HhhcchhHHHHHHHHHHhhcCC--chHHHHH-----HHHHhhhhcccccHHHHHHHHHHCCCCcCH---HHHHHHHHHHH
Q 010459 325 IKNYMFSRLDDLGDDLASRIGR--TELVWCL-----RLLSHACLLSHRGIDSVVREMESAKVRWNV---TTANIILLAYL 394 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~ 394 (510)
...|+.+.|.+.+......... ....|.. .+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7889999998887766533211 1111111 123344567778888887665542221111 11345566788
Q ss_pred cCCChhHHHHHHHhhhhC----CCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459 395 KMKDFKHLRVLLSELPTR----HVKPDI-VTIGILYDARRIGFDGTGALEMWKRIG 445 (510)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~ 445 (510)
..|+.++|..++.+.... |..++. .+...+-.++.+.|+.++|.+.+.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999987642 333322 234444446788999999999888773
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.0005 Score=61.33 Aligned_cols=292 Identities=13% Similarity=0.015 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI-IHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~ 183 (510)
-+++++..+.+..++++|.+++....+ ..+.+....+.|-.+|-...++..|-..++++... .|...-|..- ...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 467788878888999999999886653 33346777888888999999999999999998865 5555555322 244
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY--GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
+-+.+.+..|+++...|... |+...-..=+.+. ...+++..+..+.++....| +..+.+..--..-+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 55778888999998888553 2222222222222 23577778888888877543 2222222222345778888
Q ss_pred HHHHHHHHHHH-CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------------CCHH--------HHHH
Q 010459 262 RMEGTYKSMLT-KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-------------LKED--------LVRK 319 (510)
Q Consensus 262 ~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-------------~~~~--------~~~~ 319 (510)
.|.+-|+...+ .|.. ....|+..+ +..+.|+.+.|.+...+++++|+. ||+. .-++
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 88888888765 4555 345666555 344667888888888888877653 1211 1133
Q ss_pred HHHH-------HHhhcchhHHHHHHHHHHhhc--CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459 320 LAEV-------YIKNYMFSRLDDLGDDLASRI--GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390 (510)
Q Consensus 320 li~~-------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 390 (510)
++.+ +.+.++++.|.+.+-++..+. .-++++...+...- ..+++-+..+-+.-+.+..+- ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 3333 345567777766633332111 12456655443322 233444444555555555554 467888888
Q ss_pred HHHHcCCChhHHHHHHHhhh
Q 010459 391 LAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~ 410 (510)
-.||++.-++.|-.++-+=.
T Consensus 318 llyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCc
Confidence 89999988888888776543
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=0.00015 Score=72.10 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
|..+.+-|+..|+++.|.++|-+.- .++--|..|.+.|+|+.|.++-.+. .|.......|-+-..-.-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHh
Confidence 3444445555555555555543321 1333444555555555555444332 2222233333333333444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
.|++.+|++++-.+. .|+. .|..|-+.|..++.+++..+-.-.. -..|-..+..-+-..|++..|++-
T Consensus 837 hgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHH
Confidence 455555554443333 3332 3445555555555555554332111 124555666777778888888876
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 338 (510)
|-+. .-|.+-+++|-.++.+++|.++.+
T Consensus 905 flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 905 FLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 6433 236677889999999999888843
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=8.7e-05 Score=67.45 Aligned_cols=163 Identities=12% Similarity=0.110 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS--DTYDG 214 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ 214 (510)
.+-.+...+.+.|++++|...|++..+. .|+ ...|..+...+.+.|++++|...++++.+....... .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3444444455555555555555555433 121 123444445555555555555555555443211111 12222
Q ss_pred HHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 010459 215 LIQAYGKY--------KMYDEIDMCLKMMKLDGCSPD-HITY-----------------NLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 215 li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~ 268 (510)
+-..+.+. |+.++|.+.|+.+.+.. |+ ...+ -.+...|.+.|++++|...++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 22333322 44555555555554431 22 1111 123344556666666666666
Q ss_pred HHHHCCC-cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 269 SMLTKRM-HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 269 ~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
....... .| ....+..+..++...|+.++|..+++.+..
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6554321 11 234555666666666666666666655543
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=2.5e-05 Score=77.55 Aligned_cols=214 Identities=11% Similarity=0.046 Sum_probs=157.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
..+...+...|-...|+.+|++. ..|.-+|.+|...|+..+|..+..+..+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 34556677778888888888775 35667788888888888888888777763 67888888888777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (510)
--+++|.++++..... .-..+-.-..+.++++++.+.++.-.+.. +....+|-.+-.+..+.++++.+.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788888888765432 00111111223677788888777665543 345567777777777888888888888
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
.......+.+..+||.+-.+|.+.++..+|...+.+..+.... +-..|..-+....+-|.+++|++.+.++.+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888888888999999999999888898888888887644 455666666677888899998888888763
No 102
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=6.9e-07 Score=53.78 Aligned_cols=33 Identities=39% Similarity=0.714 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 208 (510)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00013 Score=64.12 Aligned_cols=160 Identities=14% Similarity=0.043 Sum_probs=109.2
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
...-+.+...|+-+....+..... ...+.|....+.++....+.|++..|...|.+..... ++|...|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 344555666677777776666543 3445566666677777777888888888887776553 4577778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 266 (510)
.|++++|..-|.+..+.... +...+|.|.-.|.-.|+.+.|..++......+ ..|...-..+.......|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888777777664322 44556666667777788888888877777665 33555566666677777888887777
Q ss_pred HHHHH
Q 010459 267 YKSML 271 (510)
Q Consensus 267 ~~~m~ 271 (510)
-..-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.4e-05 Score=77.74 Aligned_cols=214 Identities=12% Similarity=0.008 Sum_probs=172.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 290 (510)
.-..+...+.+.|-...|..+|+++. .|.-+|.+|...|+..+|..+..+-.+ -+||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33667778888999999999999876 588899999999999999999988877 3678889998888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHH
Q 010459 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV 370 (510)
Q Consensus 291 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 370 (510)
...-+++|.++.++...+ .-..+-....+.++++++.+.++.-....+-...+|.....+..+.++.+.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 888889999998876432 1111111122368899999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 371 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
|..-....+. +...||.+-.+|.+.|+-.+|...+.+..+.+..|- ..|...+-...+-|.+++|++.+.++
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHH
Confidence 9988876544 678999999999999999999999999998763332 33333333456778899999888877
No 105
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=9.8e-07 Score=53.09 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR 278 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 278 (510)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 106
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.0014 Score=61.74 Aligned_cols=216 Identities=8% Similarity=-0.037 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
++..+-..+...++.++|+.+.+.+.+. .+-+..+|+..-.++.+.| ++++++..++++.+.. +.+..+|+..-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3445555566788999999999988752 2334446666666666777 6899999999998775 3467788876666
Q ss_pred HHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C
Q 010459 184 YSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA---G 258 (510)
Q Consensus 184 ~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g 258 (510)
+.+.|+. ++++++++.+.+...+ |..+|+...-.+.+.|++++++..++++.+.. ..|...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 6666653 6789999999887655 88899999999999999999999999999877 45778888766555444 2
Q ss_pred CH----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459 259 LL----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF----GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327 (510)
Q Consensus 259 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 327 (510)
.. +++++...+.+..... |...|+-+-..+... +...+|.+.+.+..+.+ ..+......|++.|+..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 22 4667777677665432 566777777767662 34466888887776644 34566778888888753
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=0.00014 Score=66.03 Aligned_cols=172 Identities=10% Similarity=0.001 Sum_probs=127.4
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIY 177 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~ 177 (510)
.....+......+.+.|++++|...|+.+.......|. ...+..+...|.+.|++++|...|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556777888899999999999999988753222222 246777889999999999999999999876322111 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHccCCHHHHHHHH
Q 010459 178 NSIIHGYSKI--------GKFNEALLFLNEMKEMNLSPQSDTY-----------------DGLIQAYGKYKMYDEIDMCL 232 (510)
Q Consensus 178 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~-----------------~~li~~~~~~g~~~~a~~~~ 232 (510)
..+..++.+. |+.++|.+.|+.+...... +...+ -.+...|.+.|++++|...+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5555555554 7889999999999875432 11122 13456678899999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 233 KMMKLDGC--SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 233 ~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+...+... +.....|..+..++.+.|++++|..+++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99886521 224578899999999999999999999988765
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.7e-05 Score=72.00 Aligned_cols=220 Identities=12% Similarity=0.067 Sum_probs=125.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
.+.|++.+|.-.|+..+..... +...|--|-......++-..|...+.+..+.. +-|....-+|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4566677777777666665433 55666666666666666666666666666554 335555556666666667666777
Q ss_pred HHHHHHHHCCCc--------cCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459 265 GTYKSMLTKRMH--------LRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335 (510)
Q Consensus 265 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 335 (510)
+.++..+....+ ++...-.. +.......+....++|-++. +.+..+|+.+...|--.|--.|.|+++.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 776665433210 00000000 11111122233334443333 34444666666666666666777777777
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409 (510)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (510)
.|+......+.|...||-+...++...+.++|+..+.+..+..+. =+.++..|--.|...|.+++|.+.|-..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777766666667777777777777666667777777666654322 1233334555666667777766666544
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=0.0056 Score=61.86 Aligned_cols=368 Identities=13% Similarity=-0.000 Sum_probs=226.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDT 211 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t 211 (510)
..+.-|...|..|.-+...+|+++.+-+.|++....- .-....|+.+-..|...|.-..|+.+++.-....-.| |...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688899999999999999999999999887432 2356789999999999999999999998875544334 3333
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-
Q 010459 212 YDGLIQAYG-KYKMYDEIDMCLKMMKLD--GC--SPDHITYNLLIQEFACA-----------GLLKRMEGTYKSMLTKR- 274 (510)
Q Consensus 212 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g- 274 (510)
+-..-..|. +.+.++++...-.+.... +. ......|-.+--+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333343 346666666655555441 10 12233333333333321 12456777778777654
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH
Q 010459 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR 354 (510)
Q Consensus 275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 354 (510)
-.|+..-|.++- |+..++++.|.+...+..+.+-..+...+.-|.-.+...+++.+|..+........+.|-.....-
T Consensus 476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 456666665554 566788999999999999886677888888888888888999999988776665554432211111
Q ss_pred HHHhhhhcccccHHHHHHHH---------------------------------------------------HHCC-----
Q 010459 355 LLSHACLLSHRGIDSVVREM---------------------------------------------------ESAK----- 378 (510)
Q Consensus 355 i~~~~~~~~~~~a~~~~~~m---------------------------------------------------~~~g----- 378 (510)
+..-..-++.++++.....+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 11111122222221111111 0001
Q ss_pred ----C--CcC------HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459 379 ----V--RWN------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIG 445 (510)
Q Consensus 379 ----~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~ 445 (510)
+ .|+ ...|......+.+.+..++|...+.+... +.|-. ..|.-.-..+...|...+|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 111 12344445566777777777766665554 22322 222222223556678888888887764
Q ss_pred CccccccccChhHHHHHhhccCchhHHHH--HHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459 446 FLFKTVEINTDPLVLAVYGKGHFLRYCEE--VYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 446 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 507 (510)
.. .|.++....++...+.+.|+..-|.. ++..+.+.+ +-+...|-.+-..+-+.|+.+.|
T Consensus 712 ~l-dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 712 AL-DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred hc-CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH
Confidence 43 22234445667778888888887777 888887742 12445888888888888887754
No 110
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.5e-06 Score=51.95 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 207 (510)
+||.+|++|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.0064 Score=61.85 Aligned_cols=106 Identities=5% Similarity=-0.104 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCC-ccccccccC----h
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF-LFKTVEINT----D 456 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~----~ 456 (510)
|....+-..+-++.+.++++|..++...++ |.-.+..|. ..+..-..++-+.|.- ....|+... .
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 344444444555556666666665554432 222233222 2233333344444421 112222222 2
Q ss_pred hHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459 457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL 506 (510)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 506 (510)
..+...|.+.|.+..|-+=|.+.-.+ -.-++++.++|+.++
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 33456777888888887777655421 135677777887765
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0054 Score=60.09 Aligned_cols=345 Identities=13% Similarity=0.072 Sum_probs=197.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHH--
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL--IQAY-- 219 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--i~~~-- 219 (510)
+=++.+.+.|++++|.+..+.+...+ +-+...+..=+-+..+.+++++|+.+.+.-.. ..+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34677888999999999999999876 44667777888889999999999976654321 1222222 3444
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-----------------------
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH----------------------- 276 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------------- 276 (510)
.+.+..++|...++-.. ..|..+...=...+-+.|++++|+++|+.+.+.+..
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 47899999999998433 223334444455678899999999999988554321
Q ss_pred -----cCHHHHHHHHH---HHHhcCChhHHHHHHHHHHhc-------CCCCCH-------HHHHHHHHHHHhhcchhHHH
Q 010459 277 -----LRSSTMVAILD---AYMNFGMLDKMEKFYKRLLNS-------RTPLKE-------DLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 277 -----p~~~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-------~~~~~li~~~~~~~~~~~a~ 334 (510)
| ..+|..+.+ .+...|++.+|++++....+. +-.-+. .+-..|.-.+...|+-.++.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1 123333332 334578888888888877221 111111 11123445566778888888
Q ss_pred HHHHHHHhhcCCch----HHHHHHHHHhhhhcccc-cHHHHHHHHHHCCC----------CcCHHHHH-HHHHHHHcCCC
Q 010459 335 DLGDDLASRIGRTE----LVWCLRLLSHACLLSHR-GIDSVVREMESAKV----------RWNVTTAN-IILLAYLKMKD 398 (510)
Q Consensus 335 ~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~----------~p~~~~~~-~li~~~~~~g~ 398 (510)
.+...+....+.|. +.-|.++..-....-.+ .++..++.....-. ....+..| .++..| .+.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 88888877776664 23344443322222222 12222322221100 00111222 222222 233
Q ss_pred hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhh--hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHH
Q 010459 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARR--IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476 (510)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 476 (510)
.+.+.++-.... +..|... +..++..+. +.....++.+++.............+--..+..-...|+++.|.+++
T Consensus 323 ~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344444444333 2234433 344444322 22245667777666533211111222333455677899999999999
Q ss_pred h--------hcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459 477 S--------SLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 477 ~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 507 (510)
. .+.+.+..|-.+ .+++..+.+.++.+-|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSA 436 (652)
T ss_pred HHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccH
Confidence 9 777777778744 4777777777766544
No 113
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.1e-06 Score=51.22 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 010459 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277 (510)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 277 (510)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666666555554
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0017 Score=67.21 Aligned_cols=252 Identities=13% Similarity=0.112 Sum_probs=178.6
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 189 (510)
...+...+-+++|..+|+.. ..+....+.||.- -+++++|.+.-++.. ....|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 34455555666666666543 2344444555442 366777776666554 45679999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
+.+|.+-|-+. -|+..|..+|+...+.|.+++-.+.+....+..-+|.+. +.+|-+|++.++..+..++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 99998877543 267789999999999999999999888877766566554 57889999999887766554
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchH
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL 349 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
..||......+-+-|...|.++.|.-+|... .-|..|...+...|.+..|.+..+. ..+..
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK-----Ans~k 1250 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK-----ANSTK 1250 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh-----ccchh
Confidence 2467777788888899999999888888654 3466677777777777777666433 34567
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
+|...-.+|...+.+.-| +|....+.....-..-++.-|-..|-+++-+.+++.-.
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 888887777766544322 34444444455666778888999999998888877654
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00024 Score=69.05 Aligned_cols=251 Identities=13% Similarity=0.018 Sum_probs=188.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
-+.+.|++.+|.-.|+...+... -+...|--|-.....+++-..|+.-+++.++.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 35678999999999999988753 37889999999999999999999999999886533 67788888889999999999
Q ss_pred HHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 228 IDMCLKMMKLDGCS--------PDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 228 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
|++.|+.-.....+ ++...-+. ..+.....+....++|-++. +.+..+|......|--.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999886543211 01110000 22333344556677777665 445345666666666668889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH--
Q 010459 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-- 376 (510)
Q Consensus 299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-- 376 (510)
...|+..+... +-|..+||.|-..++...+..+|...+.+.....+.-+.++..|..+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999998765 557789999999999999999999999999999999999999999999999999999888865443
Q ss_pred -CC------CCcCHHHHHHHHHHHHcCCChhHHH
Q 010459 377 -AK------VRWNVTTANIILLAYLKMKDFKHLR 403 (510)
Q Consensus 377 -~g------~~p~~~~~~~li~~~~~~g~~~~A~ 403 (510)
.+ ..++...|..|=.++.-.++.|.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 21 1223456666555555555555433
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0031 Score=61.02 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-------HH
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR-------KL 320 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~l 320 (510)
..+.++.-+..+++.|.+-+....... -+..-++..-.+|...|...+....-....+.|... ..-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHh
Confidence 345556666666777777776665543 133334444455555565555555444444433221 11111 12
Q ss_pred HHHHHhhcchhHHHHHHHHH
Q 010459 321 AEVYIKNYMFSRLDDLGDDL 340 (510)
Q Consensus 321 i~~~~~~~~~~~a~~~~~~~ 340 (510)
-.+|.+.+.++.+...++..
T Consensus 305 g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHH
Confidence 23455555666666555543
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00051 Score=60.43 Aligned_cols=161 Identities=7% Similarity=-0.085 Sum_probs=110.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN 327 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 327 (510)
..+-..+...|+-+....+........ .-|............+.|++..|...+.+..... ++|...++.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555666666666666655543221 1133444456667777777777777777665543 66777777777777777
Q ss_pred cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHH
Q 010459 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS 407 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (510)
|+++.|...+.+.....+.++...|.+...+.-.|+.+.|..++......+.. |...-..+.-.....|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777777777777777888888888888888888888887777555 55566667777788888888888766
Q ss_pred hhhh
Q 010459 408 ELPT 411 (510)
Q Consensus 408 ~m~~ 411 (510)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5543
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.16 E-value=9.4e-05 Score=61.20 Aligned_cols=92 Identities=9% Similarity=-0.074 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 224 (510)
+...+.+.|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+... .+..++..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 4444455555555555555555443 22445555555555555555555555555554332 244555555555555555
Q ss_pred HHHHHHHHHHHHhC
Q 010459 225 YDEIDMCLKMMKLD 238 (510)
Q Consensus 225 ~~~a~~~~~~m~~~ 238 (510)
.++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00068 Score=59.39 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--HHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKM--YDEI 228 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a 228 (510)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445544444444433 234555555555555555555555555555443321 34444444443 234444 2555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
.+++++..+.. +.+...+..+-..+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555443 224444555555555555555555555555443
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=0.0018 Score=67.49 Aligned_cols=133 Identities=12% Similarity=0.083 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP-SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
.++..+-.|.....+.|..++|..+++...+. .| +...+..+...+.+.+++++|+...++....... +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34555666666666667777777777766655 33 3445566666666777777777777666664422 34444555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
-.++.+.|++++|..+|++....+ +-+..+|..+-..+-..|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666677777777777766532 233566666666666667777777777666543
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.011 Score=57.57 Aligned_cols=375 Identities=10% Similarity=0.018 Sum_probs=205.9
Q ss_pred CCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 99 GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178 (510)
Q Consensus 99 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 178 (510)
.+-|..+|+.+|+-+... ..+++++.++.+. .-++-....|..-|..-.+..+++....+|.+-... ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 356888999999987666 9999999999997 455667788999999999999999999999998766 55788888
Q ss_pred HHHHHHHh-cCChHH----HHHHHHH-HHHCCCCC-CHHHHHHHHHHH---------HccCCHHHHHHHHHHHHhCCCCC
Q 010459 179 SIIHGYSK-IGKFNE----ALLFLNE-MKEMNLSP-QSDTYDGLIQAY---------GKYKMYDEIDMCLKMMKLDGCSP 242 (510)
Q Consensus 179 ~li~~~~~-~g~~~~----a~~~~~~-m~~~g~~p-~~~t~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~ 242 (510)
.-|+---+ .|+... ..+-|+- |.+-|+.| ....|+..+... ....+++...++++++...-+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 77764333 222222 2223332 23445443 223455555432 22335556777777765422110
Q ss_pred CHHHHHH------HHHHH-------HHcCCHHHHHHHHHHHHH--CCCccCHHH---------------HHHHHH-----
Q 010459 243 DHITYNL------LIQEF-------ACAGLLKRMEGTYKSMLT--KRMHLRSST---------------MVAILD----- 287 (510)
Q Consensus 243 ~~~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~----- 287 (510)
=...|+- =|+-. -+...+..|.++++++.. .|..-+..+ |-.+|.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 0111111 11100 112234445555444431 221111000 111111
Q ss_pred --------------------------------------------HHHhcCC-------hhHHHHHHHHHHhcCCCCCHHH
Q 010459 288 --------------------------------------------AYMNFGM-------LDKMEKFYKRLLNSRTPLKEDL 316 (510)
Q Consensus 288 --------------------------------------------~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~ 316 (510)
.+...|+ .+++..++++.+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 2223333333322111112222
Q ss_pred HHHHHHHHHhh---cchhHHHHHHHHHHhhcC-CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-CHHHHHHHHH
Q 010459 317 VRKLAEVYIKN---YMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-NVTTANIILL 391 (510)
Q Consensus 317 ~~~li~~~~~~---~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 391 (510)
|.++.+---.. ...+........+..... ....+|...+..-.+..-.+.|..+|.+..+.+..+ ++..+++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 22211110000 012233333333333332 335667777777777777788888888888888766 6777777777
Q ss_pred HHHcCCChhHHHHHHHhhh-hCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccc--cccChhHHHHHhhccCc
Q 010459 392 AYLKMKDFKHLRVLLSELP-TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV--EINTDPLVLAVYGKGHF 468 (510)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 468 (510)
-||. ++..-|.++|+.=. +.|- +..--...++-+..-++-..+..+|++......++ ....|..+++-=..-|+
T Consensus 411 y~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 6665 67788888888755 3432 22223345555556667778888888875443322 33557777777777888
Q ss_pred hhHHHHHHhhcCC
Q 010459 469 LRYCEEVYSSLEP 481 (510)
Q Consensus 469 ~~~A~~~~~~m~~ 481 (510)
+..+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766654
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.10 E-value=0.00029 Score=58.25 Aligned_cols=96 Identities=6% Similarity=-0.099 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 255 (510)
.+..+...+.+.|++++|...|+........ +..+|..+...+.+.|++++|...|++..+.. +.+...|..+-.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3555667777788888888888887765432 66777777778888888888888888877664 446777777777788
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 010459 256 CAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~ 273 (510)
+.|++++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877654
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.00024 Score=62.19 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=83.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGL--LKRM 263 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A 263 (510)
.++.+++...++...+... .|...|..|...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566677767776666543 367777777777878888888888888777665 3466666666665 356666 4778
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 264 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
.+++++..+.+.. +..++..+...+...|++++|...++.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888877766543 55667777777777888888888888777654
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0013 Score=57.90 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK---- 221 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~---- 221 (510)
...|++.|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+-. +..|.+.|..+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555555555555544421 22222222333444455555555555554432 34444444444443
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
.+.+.+|.-+|++|.+.- .|+..+.+-+..++...|++++|..++++....
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 234555555555554321 355555555555555555555555555555544
No 125
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.02 E-value=5.6e-06 Score=48.12 Aligned_cols=29 Identities=52% Similarity=0.923 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMN 204 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 204 (510)
+||+||++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 126
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=5.7e-05 Score=72.90 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=75.1
Q ss_pred hccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459 96 QHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL 174 (510)
Q Consensus 96 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 174 (510)
.+....+......+++.+....+.+++..++..++... ....-..|..++|..|.+.|..+.++.++..=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 33444455555666666666666666666665555411 11122234446666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY 222 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 222 (510)
.|+|.||+.+.+.|++..|.++..+|..++...+..|+..-+..|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666666555555556665555555554
No 127
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=8.4e-06 Score=47.35 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.0058 Score=64.63 Aligned_cols=128 Identities=9% Similarity=0.063 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP--------- 172 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--------- 172 (510)
+...+..|+..+...+++++|.++.+.......-.+....+..+ .+.+.++.+++..+ .+...- ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhc-ccccchhHHHH
Confidence 44577889999999999999999988655433333333444433 56666666665555 222210 11
Q ss_pred ----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 173 ----------SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 173 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+...+-.+..+|-+.|+.++|..+++++++.... |..+.|.+...|+.. ++++|..++.+..
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 1134445555666666666666666666665522 566666666666666 6666666666555
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00047 Score=66.40 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 223 (510)
+|+..+...++++.|+.+|+++.+. .|+ .+..|...+...++..+|.+++.+...... -|......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 3444444445566666666665544 233 223355555555555555555555554321 14444444445555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
+.+.|+.+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5566666665555442 123335555666666666666665555544
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.0057 Score=58.75 Aligned_cols=116 Identities=15% Similarity=0.009 Sum_probs=66.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHH
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 298 (510)
...|+.++|+..++.+...- +-|...+......+.+.++.++|.+.++.+... .|+ ......+-.++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 34566666666666665542 234444445556666666666666666666654 233 33444555666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD 339 (510)
Q Consensus 299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (510)
..+++...... +-|+..|..|-.+|...|+..++.....+
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666655443 44566666666666666666555554333
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.012 Score=52.01 Aligned_cols=207 Identities=13% Similarity=0.027 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEA-VRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
-+-++|...|......+- +. .+-.|.....-.+-.....-++.++- -++.+.+......-|......-...|+.
T Consensus 46 y~~raylAlg~~~~~~~e---I~--~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~ 120 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISE---IK--EGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH 120 (299)
T ss_pred HHHHHHHHcccccccccc---cc--cccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence 455667777765544332 22 33344444444333333334444443 3445555554444343333444457889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKR 262 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 262 (510)
.|++++|++..... - +......=+..+.|..+.+.|.+.+++|.+. -+..|.+-|..++.+ .+...+
T Consensus 121 ~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 121 DGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhh
Confidence 99999999988762 1 3334444455667888999999999999863 355566655555554 457889
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
|.-+|++|-+. ..|+..+.+....++...|++++|..+++...... .-++.+...+|..-...|..
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 99999999764 57788999999999999999999999999998765 33455555555544444443
No 132
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.0003 Score=60.35 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010459 135 SRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209 (510)
Q Consensus 135 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 209 (510)
-..|-.+|..+|+.|.+. |.++-....+..|.+.|++.|..+|+.||+.+=+.. + .|..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~-f---------------vp~n 106 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGK-F---------------VPRN 106 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCC-c---------------cccc
Confidence 455667777777777654 666667777777888888888888888887765421 1 1111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 259 (510)
.+.++-.-| -.+-+-|.+++++|...|+-||..++..++..+.+.+.
T Consensus 107 -~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 -FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 12334455666666666666666666666666555543
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.008 Score=62.78 Aligned_cols=131 Identities=7% Similarity=-0.141 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHH
Q 010459 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK-EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356 (510)
Q Consensus 278 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 356 (510)
+...+..|.....+.|.+++|+.+++...+.. || ......+...+.+.+.+++|....+......+.+....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45555556666666666666666666655542 33 2334455555566666666666666666666666666666666
Q ss_pred HhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 357 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
.+...|+.++|.++|++....+.. +..++..+-.++-..|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777778887774333 467777777778888888888888888765
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00025 Score=53.85 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIYNSIIHGYSKIG--------KFNEALLFLNEMKEMNLSPQSDTYDG 214 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t~~~ 214 (510)
..|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+-++.. +.-..+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777776666543 23455666777777777777777777
Q ss_pred HHHHHHc
Q 010459 215 LIQAYGK 221 (510)
Q Consensus 215 li~~~~~ 221 (510)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766543
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.011 Score=60.27 Aligned_cols=310 Identities=10% Similarity=0.007 Sum_probs=169.1
Q ss_pred hhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 010459 73 EHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE 152 (510)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 152 (510)
..|++++++..+. +.. -|.-+=+.|...|.+++|.++-+.-. .+ .=..||-.....+-..
T Consensus 812 eLgMlEeA~~lYr-------~ck---------R~DLlNKlyQs~g~w~eA~eiAE~~D---Ri-HLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 812 ELGMLEEALILYR-------QCK---------RYDLLNKLYQSQGMWSEAFEIAETKD---RI-HLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHhhHHHHHHHHH-------HHH---------HHHHHHHHHHhcccHHHHHHHHhhcc---ce-ehhhhHHHHHHHHHhh
Confidence 4577777777765 211 23344455677888888888766321 11 1123444455555566
Q ss_pred CCHHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459 153 GLMEEAVRAFQEME----------GFA---------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213 (510)
Q Consensus 153 g~~~~A~~~~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 213 (510)
+|.+.|++.|++-. ... -..|...|..--.-.-..|+.+.|+.+|...+ -|-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhh
Confidence 77777777766421 110 01233444444444455677777777776653 345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 293 (510)
++++..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|..+|-+.+ +|...|+.|-..+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcC
Confidence 56677777788888887766543 55556677788888888888888887654 3333444332222
Q ss_pred ---------------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH-----------hhcCCc
Q 010459 294 ---------------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-----------SRIGRT 347 (510)
Q Consensus 294 ---------------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------~~~~~~ 347 (510)
+.-.|-..|++ .|.. ...-+..|-+.|.+.+|.++.-... -....|
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 22223333322 2211 1234556788888888876631111 112234
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHH----
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIG---- 422 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~---- 422 (510)
+...+.-..-+..+.++++|..++-..++ |.-.+.. |+...+.--.++-+.|. .+.-.|+..+-.
T Consensus 1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 44444444445555555666555544332 2222322 33334444444555554 333445555433
Q ss_pred HHHHhhhhcCccchHHHHHHHc
Q 010459 423 ILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 423 ~li~~~~~~~~~~~a~~~~~~~ 444 (510)
.+-..|.++|.+..|-+-|.+.
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhh
Confidence 3334678888888887776655
No 136
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.0002 Score=69.15 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 010459 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF--ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 211 (510)
+.+.+......+++.+....+++++..++-+.... ....-..|.+++|+.|.+.|..+.++++++.=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556666677777777777777777777776654 1111223445777888888877888887777777777788888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888877777777665555666666555555444
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00099 Score=54.48 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
.+..+...+.+.|++++|..+|++..+.. +.+...|..+-..|...|++++|...|+...
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444443333322 2223333333333334444444444443333
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.01 Score=62.83 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ------- 208 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------- 208 (510)
.+...+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 45677899999999999999999999977765 45443 233333356666665554444 22111 0111
Q ss_pred ------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 209 ------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 209 ------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
...+-.|..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|+.. ++++|.+++.+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 1233344444444555555555555555444 33444555555555555 5555555554443
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.85 E-value=0.0035 Score=64.99 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA 161 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 161 (510)
.|..+-..|....+...|.+.|+...+ --..|...+....+.|++..+++.|..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344444445544455556666554431 1223445556666666666666666655
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.0003 Score=53.38 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=44.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYK--------MYDEIDMCLKMMKLDGCSPDHITYNL 249 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 249 (510)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 444445555666666666666666666 666666666666665542 12234455555555555555555555
Q ss_pred HHHHHH
Q 010459 250 LIQEFA 255 (510)
Q Consensus 250 li~~~~ 255 (510)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 141
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.00021 Score=61.20 Aligned_cols=127 Identities=10% Similarity=0.127 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459 159 VRAFQEMEGFALKPSLEIYNSIIHGYSKI-----GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233 (510)
Q Consensus 159 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 233 (510)
...|+..... ..|..+|..+|+.|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 3445554322 56788888888887754 5677777778888888888888888888887765 3322 111221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 010459 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLL 306 (510)
Q Consensus 234 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~m~ 306 (510)
.+- --| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.. .+..++.-.|.
T Consensus 110 ~~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 110 AEF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 111 234678999999999999999999999999999877653 23334433343
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=0.0025 Score=61.10 Aligned_cols=198 Identities=15% Similarity=-0.014 Sum_probs=142.2
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
|+...+...+.+.........+..++....+ ..-..--|..-+ .+...|++++|+..++.+.+.- +-|...+...
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4445556666665555555555544443322 122223343333 3447899999999999988763 3466777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 259 (510)
...+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|+..+|.++++...... +-|...|..|-.+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 88999999999999999999885 455 5666778899999999999999999988765 5689999999999999999
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 010459 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVY 324 (510)
Q Consensus 260 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~ 324 (510)
..++..-..++. ...|++++|...+....+.. ..|+..=+...|+..
T Consensus 424 ~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 424 RAEALLARAEGY------------------ALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred hHHHHHHHHHHH------------------HhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 999988877654 34678888888887777542 234444445555543
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.82 E-value=0.037 Score=57.87 Aligned_cols=163 Identities=8% Similarity=-0.043 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQA 218 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~ 218 (510)
..|..|-..|+...+...|...|+..-+.+ .-+...+-...+.|+...+++.|.++.-.--+.. ...-..-|..+--.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 678889999999999999999999998765 3367889999999999999999999843332211 11112233334445
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH--HHHHHhcCChh
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI--LDAYMNFGMLD 296 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~ 296 (510)
|.+.++...|..-|+...+.. +.|...|..+..+|.+.|++..|.++|.+.... +|+. +|... .-.-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 677888999999998887665 458899999999999999999999999887765 3332 33322 22345678899
Q ss_pred HHHHHHHHHHh
Q 010459 297 KMEKFYKRLLN 307 (510)
Q Consensus 297 ~a~~~~~~m~~ 307 (510)
++...+..+..
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 99888887764
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.0015 Score=53.31 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
+......+...+.+.|++++|.+.|+.....+ +.+...|..+...+.+.|++++|...|++..+.+ ..+..++..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33455667777778888888888888887654 3467778888888888888888888888876654 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 010459 218 AYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.|...|+.++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887765
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.002 Score=53.44 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS--DTYDGLIQAYGKYKMY 225 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~ 225 (510)
.++...+...++.+.+.. |+. ...-.+-..+...|++++|.+.|+........|+. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555432 111 11122234445555555555555555554422211 1223344445555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
++|+..++...... .....+...-+.|.+.|+.++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554433221 122333344455555555555555554
No 146
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.046 Score=53.29 Aligned_cols=368 Identities=14% Similarity=0.046 Sum_probs=225.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 010459 111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGK 189 (510)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 189 (510)
.+....|+++.|...|..... --++|...|+.-..+|++.|++++|++=-.+-.+. .|+ .-.|+-.-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456788999999999998764 33558889999999999999999998766665544 555 4578899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHHc---
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK------MMKLD---GCSPDHITYNLLIQEFACA--- 257 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~------~m~~~---g~~~~~~~~~~li~~~~~~--- 257 (510)
+++|+.-|.+=++.... +...++-|..++... . .+.+.|. .+... ........|..++..+-++
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999988775432 667777888877211 0 1111111 11000 0001112233333332221
Q ss_pred -------CCHHHHHHHHHH-----HHHC-------CCcc------------C----------HHHHHHHHHHHHhcCChh
Q 010459 258 -------GLLKRMEGTYKS-----MLTK-------RMHL------------R----------SSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 258 -------g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~t~~~ll~~~~~~g~~~ 296 (510)
.+...|...+.. +... +..| | ..-...+.++.-+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 111222211110 0001 1111 0 122455667777778888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH-------HHHHHhhhhcccccHHH
Q 010459 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-------LRLLSHACLLSHRGIDS 369 (510)
Q Consensus 297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~ 369 (510)
.+.+-+....+.. .+..-++..-.+|...|.+.++...-............-++ .+..+|...++.+.+..
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 8888888887765 55566677777888887776665554333322222222222 23346666778888888
Q ss_pred HHHHHHHCCCCcCHHHH-------------------------HHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHH
Q 010459 370 VVREMESAKVRWNVTTA-------------------------NIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGI 423 (510)
Q Consensus 370 ~~~~m~~~g~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 423 (510)
.|.+.......||..+- -.--..+.+.|++..|+..|.++++.. | |...|.-
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsN 397 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSN 397 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHH
Confidence 88887665555554321 111234678899999999999999764 6 5566777
Q ss_pred HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhc-------cCchhHHHHHHhhcCCCCCCCCcccHHHHHH
Q 010459 424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK-------GHFLRYCEEVYSSLEPYSREKKRWTYQNLID 496 (510)
Q Consensus 424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 496 (510)
---+|.+.|.+..|++--+..... .+..+.+|.| ..+++.|.+.|.+-.+ ..|+..-+..-+.
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYR 467 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 777888888888888876665443 2223444444 4567777778877766 4566554443343
Q ss_pred HHHh
Q 010459 497 LVIK 500 (510)
Q Consensus 497 ~~~~ 500 (510)
-|..
T Consensus 468 rc~~ 471 (539)
T KOG0548|consen 468 RCVE 471 (539)
T ss_pred HHHH
Confidence 3433
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.0026 Score=61.31 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 328 (510)
+++..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +-+......-.+.+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 44444555566666666666666553 33 22335555555555566666665555332 223333333333333333
Q ss_pred chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE 408 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (510)
+. +.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.
T Consensus 249 ~~----------------------------------~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KY----------------------------------ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CH----------------------------------HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 33 3344444444443222 344666666666666666666666666
Q ss_pred hh
Q 010459 409 LP 410 (510)
Q Consensus 409 m~ 410 (510)
+.
T Consensus 294 ~P 295 (395)
T PF09295_consen 294 CP 295 (395)
T ss_pred Cc
Confidence 54
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0033 Score=52.10 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIYNS 179 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 179 (510)
.|..++..+ ..++...+.+.++.+... .+.+ ....-.+...+...|++++|...|+........|+. ...-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 566677766 478888898889988752 2223 233334557888999999999999999987533322 34556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 235 (510)
|...+...|++++|+..++...... .....+...-+.|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788999999999999997754333 34557778899999999999999999763
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.14 Score=53.20 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHHHH--HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 107 WAVIRFL--KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 107 ~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
..+++++ .+.|+.++|..+++.... .+.. |..|...+-.+|...++.++|..+|+...+. -|+......+..+|
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 3444443 345566666655554432 1211 5555556666666666666666666665544 34455555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----------MYDEIDMCLKMMKLDG-CSPDHITYNLLIQE 253 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~ 253 (510)
++.+.+.+-.+.=-+|-+ .+.-+...+=++++.+...- -+..|.+.++.+.+.+ -.-+..=.-.-...
T Consensus 121 vR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 555544332222111111 11223344444444443321 1223445555554432 11111111111223
Q ss_pred HHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 254 FACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
.-..|++++|++++..=. +.-..-+...-+--+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 334555666666553222 22122233333344455555566666666655555554
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.56 E-value=0.14 Score=53.16 Aligned_cols=170 Identities=8% Similarity=-0.053 Sum_probs=107.5
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
|..|...+-..|.+.++.++|..+|++.. +..|+......+..+|.+.+++.+-.++=-+|-+. .+.+...+=+++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVI 151 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHH
Confidence 66778888888888899999999998775 34567777788888888887776543333333332 122444444555
Q ss_pred HHHHhcCC----------hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCHHHHHH
Q 010459 182 HGYSKIGK----------FNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNL 249 (510)
Q Consensus 182 ~~~~~~g~----------~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~ 249 (510)
+.+.+... ..-|.+.++.+.+.+ -.-+..-...-.......|++++|..++. ...+.-..-+...-+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555432 224556666666554 21122222333344556788888888883 3333333445555566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010459 250 LIQEFACAGLLKRMEGTYKSMLTKRM 275 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m~~~g~ 275 (510)
-++.+...+++.+..++-.++...|.
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 77888888899988888888887764
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.0031 Score=58.62 Aligned_cols=130 Identities=10% Similarity=0.015 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG-YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 218 (510)
.+|..++...-+.+.++.|+.+|.+..+.+. .+...|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666666677677777777777764321 122333333222 22245556677777776554 34466667777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+.+.++.+.|..+|++.... .+.. ..|...|.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776644 2222 46777777777777777777777766653
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.0024 Score=47.72 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 010459 248 NLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~ 268 (510)
..+...+...|++++|...+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333344444433333
No 153
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.51 E-value=0.077 Score=48.84 Aligned_cols=192 Identities=10% Similarity=-0.039 Sum_probs=84.7
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY-NSIIHGYSKIG 188 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g 188 (510)
-+.+...|++..|+.-|.... .+.+-+-.++-.-...|...|+-..|+.=++...+. +||...- ----..+.+.|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 344444555555555554333 121111112222233455555555555555555543 4443211 11112344556
Q ss_pred ChHHHHHHHHHHHHCCCCC--CHHHH------------HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSP--QSDTY------------DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p--~~~t~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
.+++|..=|+..+.....- ....+ ...+..+.-.|+...|......+.+.. +.|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 6666666666555543210 01111 111222333455555555555555443 34555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
...|++..|+.=++...+..-. ++.++--+-..+...|+.+.++...++.++
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5556555555444443322111 333444444445555555555555555444
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.006 Score=48.31 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 010459 180 IIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m 200 (510)
+...+.+.|++++|.+.|+..
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333444444444444444443
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0015 Score=60.67 Aligned_cols=143 Identities=12% Similarity=0.164 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.+|-.+++..-+.+..+.|+++|....+......+++...+++..+ -.++.+.|..+|+...+. +..+...|..-++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3688899999999999999999999985333445555555555443 356788899999998876 45678899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+...++.+.|..+|++.... + |.. ..|...+..=.+.|+++.+.++.+++.+. -|+......+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 99999999999999999765 3 333 48999999999999999999999998865 445333333444
No 156
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.45 E-value=0.093 Score=48.34 Aligned_cols=174 Identities=11% Similarity=0.048 Sum_probs=129.2
Q ss_pred ccCCCChhhHHHHH---HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010459 97 HDGDWTKDHFWAVI---RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ-KIIGMLCEEGLMEEAVRAFQEMEGFALKP 172 (510)
Q Consensus 97 ~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 172 (510)
..++-|+..|.++. ..|...|+...|+.=+++..+ ++||-..-. ---..+.+.|.++.|..=|+...+. .|
T Consensus 63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~ 137 (504)
T KOG0624|consen 63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH--EP 137 (504)
T ss_pred HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--CC
Confidence 34566777777665 468889999999988887754 577754322 1224577899999999999999987 34
Q ss_pred CHH----H----------H--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 173 SLE----I----------Y--NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 173 ~~~----~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+.. . | ...+..+...|+...|++....+++-. .-|...|..-..+|...|++..|..=++...
T Consensus 138 s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 138 SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 211 1 1 233445667899999999999998853 2388888889999999999999988887776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 010459 237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS 279 (510)
Q Consensus 237 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 279 (510)
+.. .-|..++--+-..+-..|+.+.++...++..+. .||.
T Consensus 217 kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 217 KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 654 345666667777888999999999999988865 4554
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0031 Score=47.06 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777788888888888877653 234466777778888888888888888887765422 44577777788888
Q ss_pred cCChhHHHHHHHHHHhc
Q 010459 292 FGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 292 ~g~~~~a~~~~~~m~~~ 308 (510)
.|+.+.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888776643
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.12 Score=48.68 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFD 127 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~ 127 (510)
+|..+.......|+.+.|..+.+
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 56777788888899999888876
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.38 E-value=0.0089 Score=47.32 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLI 251 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li 251 (510)
++..+...+.+.|++++|.+.|..+.+.... .....+..+...+.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666543211 11234445666666666666666666666543211 1134455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 010459 252 QEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
..+.+.|+.++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.018 Score=49.30 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
..+..+...|...|++++|...|++..+....++ ...|..+...+.+.|++++|.+.+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 4566677777778888888888888775432222 356777778888888888888888877764322 4555666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
.|...|+...+..-++... ..+++|.+++++....+ |+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 6766666554443333222 12566666666665542 22 35555555554443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.021 Score=48.89 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 250 (510)
....|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677777888888999999999998876543332 3577888888888899999999888887653 2356666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 328 (510)
...|...|+...+..-++.... .+++|.+++....+.+ |+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcC
Confidence 6777777776665544433221 2566777777766543 322 444444444433
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.26 E-value=0.0083 Score=51.16 Aligned_cols=94 Identities=12% Similarity=-0.081 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP--QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 251 (510)
...|..+...+...|++++|+..|++.......| ...++..+-..|.+.|+.++|...++...+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455556666666666666666666665442222 12356666666666677777776666665442 22334444444
Q ss_pred HHHH-------HcCCHHHHHHHHH
Q 010459 252 QEFA-------CAGLLKRMEGTYK 268 (510)
Q Consensus 252 ~~~~-------~~g~~~~A~~~~~ 268 (510)
..+. ..|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 5555554444443
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.071 Score=48.36 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.....+.+.|++++|.+.|+.+..... -+...- -.+..+|-+.+++++|...|++..+....-...-|...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 334444556777777777777664211 111221 234556666777777777777776653222223343444443
Q ss_pred HhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEM-NLSPQ-------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~-g~~p~-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 256 (510)
+....- ...|...... ....| ..++..+|+-|=...-..+|...+..+... =...--.+..-|.+
T Consensus 115 ~~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~ 187 (243)
T PRK10866 115 TNMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK 187 (243)
T ss_pred hhhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 310000 0000000000 00000 012233444444444445555444444311 01111134455777
Q ss_pred cCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 257 AGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
.|.+..|..-|+.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 78888888888777754 222334566667778888888887777665543
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.14 Score=45.35 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=135.9
Q ss_pred CCCCcHHHHHHHHHhh--cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChH
Q 010459 117 SRSRQIPQVFDMWKNI--EK-SRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI-IHGYSKIGKFN 191 (510)
Q Consensus 117 g~~~~a~~~~~~~~~~--~~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~ 191 (510)
.+.++..+++..+... .| ..++.++ |.-++-+...+|+.+.|...++++...= |...--..| .--+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666655432 23 5566654 6677778888999999999999987662 332211111 11234578999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
+|.++++..++.+ +.|.+++--=+...-..|+--+|.+-+....+. +.-|...|.-+-..|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 347777766565666677777887777776643 25699999999999999999999999999998
Q ss_pred HCCCccCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459 272 TKRMHLRSSTMVAILDAYMN---FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 272 ~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 328 (510)
-... .+..-+..+...+.- ..+++.+++.|.+..+... .-..++...|..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~----~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP----KNLRALFGIYLCGS 236 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh----HhHHHHHHHHHHHH
Confidence 6531 244444445444433 3456778888888876542 33344444454443
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.082 Score=52.68 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM 235 (510)
Q Consensus 192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 235 (510)
+...-+++|++.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 33444667777777777643 334455567777877777643
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.16 Score=44.86 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 185 (510)
|.-++-+....|+.+.|..+++.+.. .++-+..+--.-.-.+-..|++++|.++++.+.+.+ +.|.++|--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 34455566778999999999999875 333232222212222445699999999999999886 557788887777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---CHH
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAG---LLK 261 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g---~~~ 261 (510)
..|+.-+|++-+.+..+. +.-|...|.-|-..|...|+++.|.-.++++.-. .|. ..-+..+-+.+--.| +.+
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 788888898888888776 4569999999999999999999999999999865 344 444444544443333 566
Q ss_pred HHHHHHHHHHHCC
Q 010459 262 RMEGTYKSMLTKR 274 (510)
Q Consensus 262 ~A~~~~~~m~~~g 274 (510)
.|.+.|.+-.+..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 7888888877653
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.05 E-value=0.016 Score=55.98 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=42.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
+...|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 3344555555555555554431 23444445555555555555555555555443211 334444444555555555555
Q ss_pred HHHHHHHHh
Q 010459 229 DMCLKMMKL 237 (510)
Q Consensus 229 ~~~~~~m~~ 237 (510)
...|++..+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555444
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0011 Score=49.07 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=5.9
Q ss_pred HHHHhcCChHHHHHHH
Q 010459 182 HGYSKIGKFNEALLFL 197 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~ 197 (510)
.+|.+.|++++|.+++
T Consensus 33 ~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.027 Score=47.94 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP--SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
....|..+...+...|++++|+..|++.......+ ...+|..+-..|...|+.++|++.+++...... ....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 34566777778888899999999999887653222 235788888899999999999999988876532 234556666
Q ss_pred HHHHH-------ccCCHHHHHHHHHH
Q 010459 216 IQAYG-------KYKMYDEIDMCLKM 234 (510)
Q Consensus 216 i~~~~-------~~g~~~~a~~~~~~ 234 (510)
...+. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 66676655554443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.00 E-value=0.00097 Score=49.33 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=42.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 265 (510)
.|+++.|+.+|+++.+.... |+...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666554321 2333444466666666666666666665 2111 1122333334556666666666666
Q ss_pred HHHH
Q 010459 266 TYKS 269 (510)
Q Consensus 266 ~~~~ 269 (510)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.12 Score=48.19 Aligned_cols=204 Identities=13% Similarity=0.142 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SR-I--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
.|......|...|++++|.+.|........ .. + -...|.....+|-+. ++++|.+. |...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHH
Confidence 556677778888888888888876543110 00 0 001122222222222 33333333 3334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKL----DGCSPD--HITYNLLIQE 253 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~ 253 (510)
+..|...|++..|-+.+.. +-..|-+. |+++.|...|++..+ .| .+. ..++..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 4556666666666555544 44466666 788888888877653 22 111 3455667788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-----ccCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC--HHHHHHHHHH
Q 010459 254 FACAGLLKRMEGTYKSMLTKRM-----HLRSS-TMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLK--EDLVRKLAEV 323 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~ 323 (510)
+.+.|++++|.++|++....-. +++.. .|...+-.+...||+..|.+.+++.... ++..+ -.....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 8899999999999998876432 22222 2333444666778999999999887643 33333 2344555665
Q ss_pred HHhhcchhHHHHHHHHHH
Q 010459 324 YIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~ 341 (510)
|- .++.+.......++.
T Consensus 245 ~~-~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 245 YE-EGDVEAFTEAVAEYD 261 (282)
T ss_dssp HH-TT-CCCHHHHCHHHT
T ss_pred HH-hCCHHHHHHHHHHHc
Confidence 53 344444444433333
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.94 E-value=0.024 Score=46.62 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 224 (510)
+-.-+...|++++|..+|+.+...+.. +..-|-.|--.+-..|++++|+..|.......+. |..++-.+-.++.+.|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 344455667777777777777665422 5556666777777777777777777777665543 66666667777777777
Q ss_pred HHHHHHHHHHHHh
Q 010459 225 YDEIDMCLKMMKL 237 (510)
Q Consensus 225 ~~~a~~~~~~m~~ 237 (510)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.94 E-value=0.026 Score=54.49 Aligned_cols=87 Identities=10% Similarity=-0.057 Sum_probs=40.4
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (510)
+...|++++|.+.|+...+ -.+-+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3344455555555554442 122233444444445555555555555555554432 1134444444445555555555
Q ss_pred HHHHHHHHHH
Q 010459 193 ALLFLNEMKE 202 (510)
Q Consensus 193 a~~~~~~m~~ 202 (510)
|+..|++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.035 Score=49.06 Aligned_cols=158 Identities=8% Similarity=0.028 Sum_probs=112.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 187 (510)
-+++-+-.....+.-.+.|+.= -.++-++++....-.|.+.-....+.+..+...+.+++....|.+.-.+.
T Consensus 154 ~ii~~~e~~~~~ESsv~lW~KR--------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~ 225 (366)
T KOG2796|consen 154 KILANLEQGLAEESSIRLWRKR--------LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI 225 (366)
T ss_pred HHHHHHHhccchhhHHHHHHHH--------HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc
Confidence 3444444443445556666532 23566777788778888888888888888877677888888888888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-----YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
||.+.|...|++..+..-+.|..+++.++.. |.-.+++.+|...|.++.... +.|.+.-|.-.-+..-.|+..+
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~D 304 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKD 304 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHH
Confidence 9999999999877665445555566555443 445678888888888887665 4566666655555666788999
Q ss_pred HHHHHHHHHHCC
Q 010459 263 MEGTYKSMLTKR 274 (510)
Q Consensus 263 A~~~~~~m~~~g 274 (510)
|++..+.|.+.-
T Consensus 305 AiK~~e~~~~~~ 316 (366)
T KOG2796|consen 305 ALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 175
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.65 Score=47.51 Aligned_cols=110 Identities=10% Similarity=0.021 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 427 (510)
..+.+-.+.-+...|+-.+|.++-.+.+- ||-..|-.-+.+++..++|++-+++-+.++. +.-|.-++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHH
Confidence 44455555666666777777766655443 6888888888999999999988777766652 4556677888
Q ss_pred hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHH
Q 010459 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY 476 (510)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 476 (510)
|.+.|+.++|.+++-+.... .-...+|.+.|++.+|.++-
T Consensus 754 c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 99999999999998776332 24567888888888876654
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0045 Score=43.46 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=8.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
.+..+|.+.|++++|..+++.+.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333
No 177
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.017 Score=47.87 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCccCHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-----TKRMHLRSST 281 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 281 (510)
+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555666666777777777777766554 4466677777777777777777777776653 2366666544
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.11 Score=41.10 Aligned_cols=87 Identities=18% Similarity=0.095 Sum_probs=39.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFAC 256 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~ 256 (510)
++-..|+.++|+.+|++..+.|...+ ...+-.+-..+...|++++|..+|++..... |+ ......+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 33445555555555555555554332 2233344444555555555555555554331 22 1111112234445
Q ss_pred cCCHHHHHHHHHHHH
Q 010459 257 AGLLKRMEGTYKSML 271 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~ 271 (510)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554433
No 179
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.029 Score=44.78 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 010459 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMK---------------LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT- 272 (510)
Q Consensus 209 ~~t~~~li~~~~~~g~~~~a~~~~~~m~---------------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 272 (510)
..++.++|.++++.|+++...++++..- .....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554431 123346777777777777777777777777776653
Q ss_pred CCCccCHHHHHHHHHHHHhc
Q 010459 273 KRMHLRSSTMVAILDAYMNF 292 (510)
Q Consensus 273 ~g~~p~~~t~~~ll~~~~~~ 292 (510)
-+++.+..+|..|+.-+...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 35666666777766655443
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.71 E-value=0.15 Score=51.80 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CCHHHHHHHHHHH
Q 010459 170 LKPSLEIYNSIIHGYSKIG-----KFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKY--------KMYDEIDMCLKMM 235 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~--------g~~~~a~~~~~~m 235 (510)
.+.|...|...+++..... +.+.|.++|++..+.. || ...|..+..+|... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4567788888888765432 2668888888888754 44 34444433333221 1233444444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 236 KLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 236 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
... ....+...|.++--.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+..+..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123455677777666667889999999999988775 578888888889999999999999998887653
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.69 E-value=0.18 Score=51.19 Aligned_cols=138 Identities=11% Similarity=-0.015 Sum_probs=99.6
Q ss_pred cCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHH
Q 010459 133 EKSRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIG--------KFNEALLFLN 198 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g--------~~~~a~~~~~ 198 (510)
.+.+.|...|...+.+.... ++...|.++|++..+. .|+ ...|..+..++.... +...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 45567888999888876543 3377999999999987 555 345555444443321 2234444444
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 199 EMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 199 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
+.... ....+...|.++.-.+...|++++|...|++..+.. |+...|..+-..+...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43332 133456788888777777899999999999999874 688899999999999999999999999887654
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.24 Score=44.03 Aligned_cols=241 Identities=8% Similarity=-0.011 Sum_probs=149.9
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHcccCC--CchhhhhccC--CC----ChhhHH-HHHHH--HHhcCCCCcHHHHHHHHHh
Q 010459 63 HTTLLVESYHEHQALNALIQRLNKKVS--CPLQILQHDG--DW----TKDHFW-AVIRF--LKNSSRSRQIPQVFDMWKN 131 (510)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~--~~----~~~~~~-~ll~~--~~~~g~~~~a~~~~~~~~~ 131 (510)
-|+.-+..+.+.+...++...++.-+. .|+-..+.-+ -| +.+.|. .+|.+ ....|.+.+.+.-+..+..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 377777778888777777776663332 2221111110 01 111121 22222 2335665555543333321
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 010459 132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT 211 (510)
Q Consensus 132 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 211 (510)
.-.-.+.-+-.....+..++.|++-. ..+.+.++....-.|.+.-.+.++.+..+...+-++..
T Consensus 151 ---------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 151 ---------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred ---------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 11123333333333466777776544 45667888888888888889999999988877778888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI-----QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
...|.++-...|+.+.|...|+...+..-..|..+.+.++ ..|.-.+++..|...|.+....+.. |....|.-.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHH
Confidence 8999999999999999999999877543344555555443 4466678899999999888876433 444444433
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 322 (510)
-+..-.|+...|.+....|++.. |...+-++++-
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~~ 327 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVLF 327 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC--CccchhhhHHH
Confidence 33444688999999999998763 55555554433
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=0.6 Score=44.13 Aligned_cols=111 Identities=11% Similarity=-0.020 Sum_probs=85.2
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhh
Q 010459 350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429 (510)
Q Consensus 350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 429 (510)
+.+..|.-+...|+...|.++..+.. + ||..-|...|.+++..++|++-.++... + -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 44555666677787777777765542 2 6999999999999999999988876543 1 23478899999999
Q ss_pred hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480 (510)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (510)
+.|...+|..++.++ .+.--+..|.++|++.+|.+.--+..
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999999875 23556788999999999977655444
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0076 Score=42.29 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=28.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+.|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666666666655443 224555555666666666666666666655544
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.62 E-value=0.52 Score=42.75 Aligned_cols=174 Identities=9% Similarity=0.074 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY---NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
....+.+.|++++|.+.|+++...-..+ ...- -.+..+|-+.+++++|...|++..+.-..-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444567899999999999998763222 2222 34567778899999999999998776443333344444444331
Q ss_pred --cC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH
Q 010459 222 --YK---------------MY---DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST 281 (510)
Q Consensus 222 --~g---------------~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 281 (510)
.+ +. .+|...|+ .+|.-|=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 00 11 12223333 3344444444455555544444322 0111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459 282 MVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAEVYIKNYMFSRLDDLGD 338 (510)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 338 (510)
-..+.+-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+++.....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 124567788888888888888888864 333445566677788888888777766643
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.13 Score=40.71 Aligned_cols=103 Identities=19% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYG 220 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~ 220 (510)
.++-..|+.++|+.+|++....|.... ...+-.+-+.+...|++++|+.+|++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344556677777777777666665433 2344455566666777777777777665532 22 111122223455
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 255 (510)
..|+.++|.+.+-... -++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~l----a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL----AETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 6677777776665544 233335555555444
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.58 E-value=0.044 Score=45.06 Aligned_cols=91 Identities=10% Similarity=-0.097 Sum_probs=69.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh
Q 010459 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF 399 (510)
Q Consensus 320 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 399 (510)
+-..+...|++++|.++++-+....+.+..-|..+...+-..|++++|++.|.......+. |...+-.+-.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3344455677777777777777777777777888888888888888888888888777654 667777777888888888
Q ss_pred hHHHHHHHhhhh
Q 010459 400 KHLRVLLSELPT 411 (510)
Q Consensus 400 ~~A~~~~~~m~~ 411 (510)
+.|.+-|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.55 E-value=0.33 Score=42.73 Aligned_cols=185 Identities=11% Similarity=0.112 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.+-.....+.+.|++.+|.+.|+.+.......| -....-.+..++-+.|+++.|...|++..+.-..-....+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 334445556677888888888888875322222 2234445677788888888888888887765221112233333333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLS---PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
.+........+ ....+.. --..++..+|.-|=......+|...+..+... =...--.+..-|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 32211111110 0000000 00124455566666666666666655555421 011112345667777777
Q ss_pred HHHHHHHHHHHHCC--CccCHHHHHHHHHHHHhcCChhHH
Q 010459 261 KRMEGTYKSMLTKR--MHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 261 ~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
..|..-++.+.+.= .+-.......++.+|.+.|..+.+
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777641 111123456667777777766643
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.48 E-value=0.015 Score=40.28 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
..+.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666654 22555666666666666666666666666654
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.46 E-value=0.48 Score=44.19 Aligned_cols=123 Identities=8% Similarity=-0.094 Sum_probs=61.3
Q ss_pred hhhh-cccccHHHHHHHHHH----CCCCc--CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCC-----CCHH-HHHHH
Q 010459 358 HACL-LSHRGIDSVVREMES----AKVRW--NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK-----PDIV-TIGIL 424 (510)
Q Consensus 358 ~~~~-~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~l 424 (510)
|-.. |++++|.+.|++..+ .| .+ -...+..+...+.+.|++++|.++|++....-.. ++.. .|...
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3344 455556555554432 22 11 1234556666788888888888888887653322 1111 12222
Q ss_pred HHhhhhcCccchHHHHHHHcCCccccc----cccChhHHHHHhhc--cCchhHHHHHHhhcCC
Q 010459 425 YDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAVYGK--GHFLRYCEEVYSSLEP 481 (510)
Q Consensus 425 i~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 481 (510)
+-++...|+...|.+.+++.....+.. .......|+.+|-. ...+.+|..-|+.+..
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 224555678888888888764332211 12223334555543 2445556666666654
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.33 E-value=0.31 Score=48.77 Aligned_cols=81 Identities=7% Similarity=-0.061 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322 (510)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 322 (510)
+..+...+-.-+.+...+..|-++|..|-.. .++++.....+++++|..+-+...+. .|| +|-....
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3444444444455556677777888777532 34666777778888887777655432 222 2333334
Q ss_pred HHHhhcchhHHHHH
Q 010459 323 VYIKNYMFSRLDDL 336 (510)
Q Consensus 323 ~~~~~~~~~~a~~~ 336 (510)
-++...++++|.+.
T Consensus 813 wLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA 826 (1081)
T ss_pred HhhhhhhHHHHHHH
Confidence 44455555555544
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.026 Score=46.75 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHH
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-----EMNLSPQSDT 211 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t 211 (510)
...++..+...|++++|.++...+.... +.|...|..+|.+|...|+..+|++.|+++. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555556666666666666666543 2355566666666666666666666666553 2366665544
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.33 E-value=0.043 Score=49.07 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 134 KSRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
+-..|-.+|-+.+..+... +.++-.-..+..|.+.|++.|..+|+.||..+-+
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3445555665555555433 4455555566778888888888888888776543
No 194
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.21 E-value=0.043 Score=49.08 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------CHHHHH
Q 010459 171 KPSLEIYNSIIHGYSKI-----GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----------------MYDEID 229 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~a~ 229 (510)
++|..+|-+++..+... +.++-....++.|.+.|+.-|..+|+.||+.+-|-. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 56788888888777643 567777788899999999999999999998876542 223356
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 010459 230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLL-KRMEGTYKSM 270 (510)
Q Consensus 230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 270 (510)
+++++|...|+.||-.+-..++.++.+.+.. .+..++.-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 6666666666666666666666666666543 2333444444
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.21 E-value=1.3 Score=42.77 Aligned_cols=146 Identities=8% Similarity=-0.003 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357 (510)
Q Consensus 279 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 357 (510)
...|...+++-.+..-++.|+.+|....+.| ..+++.++++++..++.. +..-|.+++.-=....+.++.--+-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~-d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG-DRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC-CcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456667777778888999999999999988 678889999999988764 45566666655445555555555666666
Q ss_pred hhhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459 358 HACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 428 (510)
+...++-+.|..+|+...++ +.-+ ...|..+|.-=..-|+...+..+=+.|.+ +.|-..+...+.+-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 77788888999999854433 1112 46788899888888999999888888876 346555555555443
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.18 E-value=0.096 Score=41.83 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLT---------------KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
|..++.++|-++++.|+.+....+.+..-. ....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567888999999999999999888876521 12457788888888888888888888888887764
Q ss_pred -cCCCCCHHHHHHHHHHHH
Q 010459 308 -SRTPLKEDLVRKLAEVYI 325 (510)
Q Consensus 308 -~~~~~~~~~~~~li~~~~ 325 (510)
.+++.+..++..|+.-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 466666777766665443
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.18 E-value=0.026 Score=39.09 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=20.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
+.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444332 113333333444444444444444444443
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.27 Score=44.85 Aligned_cols=113 Identities=11% Similarity=-0.013 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc---ccHHHHHHHHHHCCCCcCHHHHH
Q 010459 311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSVVREMESAKVRWNVTTAN 387 (510)
Q Consensus 311 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~ 387 (510)
+-|...|-.|-..|...|+++.|...+.......++++..+..+..++....+. .++.++|+++...+.. |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 345555666666666666666666666666666666665555554444333322 4566777777766444 555555
Q ss_pred HHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 010459 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426 (510)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 426 (510)
.|-..+...|++.+|...|+.|.+. -|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 5556777777777777777777764 344444445444
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.04 E-value=0.082 Score=47.90 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=62.4
Q ss_pred HhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHH
Q 010459 325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 404 (510)
.+.+++.+|...+.......+.+.+-|+.-..+|.+.|..+.|.+-.+.....+.. -..+|..|-.+|.-.|++++|.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHHH
Confidence 34455555555555555556666666666666666666666666666665554322 34566666677777777777777
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHh
Q 010459 405 LLSELPTRHVKPDIVTIGILYDA 427 (510)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~li~~ 427 (510)
.|++.++ +.|+-.+|..=+..
T Consensus 171 aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHHHH
Confidence 7776665 56776666655553
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.92 E-value=0.17 Score=46.40 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGL 215 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~l 215 (510)
|..-+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-.. .....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444444455555555555555544 2222 34444555555555555555555555432110 012222333
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~ 237 (510)
...+.+.|+.++|.++|+.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555555543
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.18 Score=45.77 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
..+.+++++|+..|.+..+.. +.|.+-|..=..+|.+.|.++.|++=.+.-+..+.. -+.+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 346788999999998888764 457777777888899999988888877776655321 356888888889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHH
Q 010459 299 EKFYKRLLNSRTPLKEDLV 317 (510)
Q Consensus 299 ~~~~~~m~~~~~~~~~~~~ 317 (510)
.+.|+..++ +.|+-.+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 888877765 45766655
No 202
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.84 E-value=0.66 Score=37.93 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 224 (510)
+|..+.+.+........++.+.+.+. .+....|.+|..|++.. .++.++.++. .++......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 33444444444444444444444432 34444444444444332 2222233221 1122223334444555555
Q ss_pred HHHHHHHHHHH
Q 010459 225 YDEIDMCLKMM 235 (510)
Q Consensus 225 ~~~a~~~~~~m 235 (510)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.80 E-value=0.055 Score=37.97 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMK 201 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 201 (510)
.+|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.+|.+.| ++++|++.|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444455555555555555555554442 113444555555555555 4555555554443
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=2.9 Score=43.04 Aligned_cols=323 Identities=11% Similarity=0.020 Sum_probs=169.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
..+|+-+...+.+..|+++-..+. .|. ...|.....-+.+..+. +++++-.++=..... .+..+|..+..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~----~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~ 515 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLN----LPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIAR 515 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhC----CccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHH
Confidence 446667777777888888777665 333 44555555555555322 233333332222222 34556777777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCS----PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 293 (510)
-...+|+.+.|..+++.=+..+.. .+..-+..-+.-+.+.|+.+....++-.|...- +...|...+ .
T Consensus 516 ~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~ 586 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------R 586 (829)
T ss_pred HHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------H
Confidence 777778888887777654332211 122234445555666777776666665554321 111111111 1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH-HH---HHhhcCCchHHHHHHHHHhhhhc-------
Q 010459 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG-DD---LASRIGRTELVWCLRLLSHACLL------- 362 (510)
Q Consensus 294 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~~~~li~~~~~~~------- 362 (510)
+...|..+|.+..+..-. ..|-+.|-...+...+..+. +. .....++. ......-..+++..
T Consensus 587 ~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~-~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 587 NQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRI-PALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred hchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccc-hhHHHHHHHHhhhhhhhhHHH
Confidence 122333333333321100 00111111111111111110 00 00000000 00000111111111
Q ss_pred ---ccccHHHHHHHHHH-CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHH
Q 010459 363 ---SHRGIDSVVREMES-AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438 (510)
Q Consensus 363 ---~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 438 (510)
+..+-+.+++.+.. .|..-...+.+--+..+...|+..+|.++-.+.+ -||...|..=+.++...+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 11122333333332 2323344566667778889999999999988876 388888988889999999999988
Q ss_pred HHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCC
Q 010459 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKN 505 (510)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 505 (510)
++-++.. .+.-|.-.+..|.+.|+.++|.+.+-+.... . -.+.+|.+.|+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGDVK 787 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhccHH
Confidence 8877662 2344666789999999999999999887642 1 3566666666554
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.74 E-value=0.054 Score=37.97 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
|..+-..+.+.|++++|+..|++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=3.1 Score=42.47 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 010459 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN--- 248 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--- 248 (510)
-|....-.|.+.+...|.-++|.+.|-+- +. | .+-+..|...++|.+|.++-+... -|.+.+.-
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~ 916 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQ 916 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHH
Confidence 35566677778888888888887776443 21 2 235566777777877777766544 23332221
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 249 -----------LLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 249 -----------~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
--|..+.+.|+.-+|.+++.+|.+
T Consensus 917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 124456666777677777777753
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.59 E-value=0.33 Score=44.45 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--ccCHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--HLRSSTMVA 284 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ 284 (510)
.|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+-..|...|++++|...|+.+...-. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444433344455555555555554431 221 2333444555555555555555555553211 001223333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
+...+...|+.++|..+++.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555543
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.24 Score=45.14 Aligned_cols=115 Identities=14% Similarity=0.019 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHH
Q 010459 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG---KFNEALLFLNEMKEMNLSPQSDT 211 (510)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t 211 (510)
.+-|...|-.|-..|...|+++.|..-|....+.. .+|...+..+-.++.... ...++..+|+++...+.. |..+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 34566777777778888888888887777776653 345555555555544332 346777778777765432 5555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|-..+...|++.+|...++.|.+.. |....|..+|..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 6666667777788888888888877653 334445555543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.49 E-value=0.13 Score=36.49 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 203 (510)
.|.+.+++++|.++++.+.+.+. .+...|...-..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45555666666666666655532 24455555555566666666666666665543
No 210
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.46 E-value=1.3 Score=41.36 Aligned_cols=129 Identities=12% Similarity=0.210 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK--IG----KFNEALLFLNEMKEMNL---SPQSDTYDGLIQAYGKYKMY 225 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~ 225 (510)
+++...+++.|.+.|+..+..+|-+....... .. ...+|.++|+.|++.-. .++-.++..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888899999998888777663333322 22 35678999999987642 4667777777665 44443
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCccCHHHHHHH
Q 010459 226 ----DEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGL---LKRMEGTYKSMLTKRMHLRSSTMVAI 285 (510)
Q Consensus 226 ----~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~l 285 (510)
+.++.+|+.+.+.|+.++.. -+.+-|-++..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45788888888888775433 33333333333222 44778889999999988877766544
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=0.41 Score=45.96 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY-DGL 215 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~l 215 (510)
=.++|..+|+.-.+..-++.|+.+|-+..+.| +.+++..++++|.-++ .|+..-|..+|+-=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 45778888888888888999999999998888 6778888899988776 46777788888753332 2455554 566
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPD--HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
+..+.+.++-+.|..+|+...+. +..+ ...|..||+-=..-|+...+..+=+.|... -|...+.....+-|.-
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 77778888889999999854422 0122 457888998888889998888887777754 3444444444444443
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.35 E-value=1.8 Score=38.06 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=28.3
Q ss_pred HHHHHHcCCChhHHHHHHHhhhhCCCCCCH----HHHHHHHHhhhhcCccc
Q 010459 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDI----VTIGILYDARRIGFDGT 435 (510)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~ 435 (510)
+..-|.+.|.+..|..-++.+.+. -|+. .....++.++.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 455688888999888888888853 2433 33455555666666555
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.30 E-value=0.14 Score=36.35 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=21.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
|.+.+++++|.++++.+.... +.+...|...-..+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444332 2233333334444444444444444444444
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.26 E-value=3 Score=40.07 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFA---LKPSLEIYNSIIHGYSK---IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
.++-.|-...+++..+++.+.|...- +..+...--...-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34446888899999999999998641 11122222233344556 8899999999999777777788889988887
Q ss_pred HHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHCC---Ccc
Q 010459 218 AYGKY---------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL-L---KRMEGTY---KS-MLTKR---MHL 277 (510)
Q Consensus 218 ~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~---~~A~~~~---~~-m~~~g---~~p 277 (510)
.|-.. ...+.|...|.+--+. .||..+=-.+...+...|. . .+..++- .. ..+.| -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76432 2355677666655433 3444332223333333332 1 1222222 22 12333 234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 278 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
|-..+.+++.++.-.|+.++|.+..+.|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 55677888899999999999999999988764
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.13 E-value=0.74 Score=44.85 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEM 203 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 203 (510)
+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666667777777766666554 3442 34666666677777777777666666553
No 216
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.70 E-value=0.008 Score=49.67 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=85.5
Q ss_pred HHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc
Q 010459 355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434 (510)
Q Consensus 355 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 434 (510)
|..+...+..+.....++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 3444555666777777888887765667888899999999998888888777622 224445666777778888
Q ss_pred chHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCC
Q 010459 435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK 504 (510)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 504 (510)
+++.-++.+++.... .+..+.+.++++.|.+.+.+.. +...|..+++.|...++.
T Consensus 87 ~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~~------~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 87 EEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKVD------DPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGCS------SSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhcC------cHHHHHHHHHHHHhcCcc
Confidence 888888887644311 1122445567777765555544 456888999988887765
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.69 E-value=0.89 Score=37.17 Aligned_cols=121 Identities=9% Similarity=-0.044 Sum_probs=77.4
Q ss_pred HhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccch
Q 010459 357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG 436 (510)
Q Consensus 357 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 436 (510)
.+...+........++.+...+. .+...++.++..|++.+ .++.+..++. .++......+++.|.+.+-+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence 33334445566666777776663 47778888888888764 3344444442 1344555567777888888888
Q ss_pred HHHHHHHcCCccccccccChhHHHHHhhcc-CchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHh
Q 010459 437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKG-HFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500 (510)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 500 (510)
+.-++.+++. +...++.+... ++.+.|.+.+++-. +...|..++..+..
T Consensus 88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 8888887633 33345555555 78888888887633 34477788777654
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.62 E-value=0.96 Score=44.09 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788999999999999999999999998885 4553 46899999999999999999999998864
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.42 E-value=0.11 Score=37.52 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=9.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKM 234 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~ 234 (510)
++.+-..|.+.|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333444444444444444433
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.33 E-value=0.22 Score=35.80 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-ccC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM-HLR-SSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
.+++.+-..|...|++++|+..|++..+. |- .|+ ..++..+-..+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666555421 11 111 3455555566666666666666665543
No 221
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=1.8 Score=40.48 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcC-CC--hhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459 366 GIDSVVREMESAKVRWN-VTTANIILLAYLKM-KD--FKHLRVLLSELPTRHVKPDIVTIGILY 425 (510)
Q Consensus 366 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~t~~~li 425 (510)
.+...|+.+.+.|+..+ ..-+.+-+-++... .. +..+.++++.+.+.|+++...+|..+-
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34556666666665442 22222222222221 11 346777777777777777777765443
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.22 E-value=3 Score=35.32 Aligned_cols=127 Identities=11% Similarity=0.001 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CccCHHHH
Q 010459 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR---MHLRSSTM 282 (510)
Q Consensus 206 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 282 (510)
-|+..---.|-.+..+.|+..+|...|++....-+--|....-.+..+....+++..|..+++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555555666666666666666666666544334455555555555566666666666666655432 2233 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
..+.+.+...|...+|+.-|+.....- |+...-.-.-.++.+.|+.+++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 344556666666666666666665542 3333333334444555555444433
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=94.06 E-value=0.57 Score=38.91 Aligned_cols=87 Identities=7% Similarity=-0.025 Sum_probs=63.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
+...|++++|..+|.-+.-.+ .-|..-|..|-.++-..+++++|+..|......+.. |...+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345788999999998887655 245666777777788888899999988776654432 333444566778888999999
Q ss_pred HHHHHHHHh
Q 010459 299 EKFYKRLLN 307 (510)
Q Consensus 299 ~~~~~~m~~ 307 (510)
+.-|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 998888776
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.04 E-value=0.73 Score=45.70 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
..+.+++.+-+.|.++.|+++-..-. .-.+...++|+++.|.++-++. .+...|..|-+..
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 45566666666666666666543221 1234455666666666554332 3556666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
.+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|- +|....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 66666666666666542 235555566666666666666655554441 344444555556666655
Q ss_pred HHHH
Q 010459 265 GTYK 268 (510)
Q Consensus 265 ~~~~ 268 (510)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.94 E-value=3.3 Score=41.69 Aligned_cols=177 Identities=16% Similarity=0.089 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhc----CChH
Q 010459 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS------LEIYNSIIHGYSKI----GKFN 191 (510)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~----g~~~ 191 (510)
+.-+|..+.. -++| ....++...+=.||-+.+++.+.+-.+.+--.. ...|+.++..++.. .+.+
T Consensus 176 G~G~f~L~lS--lLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLS--LLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHH--hCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445666652 2333 344567777777888888888877665331112 23466666665543 4678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 192 EALLFLNEMKEMNLSPQSDTYDGL-IQAYGKYKMYDEIDMCLKMMKLDG--C-SPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 192 ~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
.|.++++.+.+. -|+..-|... -+.+...|++++|.+.|+...... . +.....+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 999999999875 4676666433 345566899999999999755311 1 122333444556688889999999999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHH--hcCCh-------hHHHHHHHHHHh
Q 010459 268 KSMLTKRMHLRSSTMVAILDAYM--NFGML-------DKMEKFYKRLLN 307 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~--~~g~~-------~~a~~~~~~m~~ 307 (510)
..+.+..- -+.++-..+.++| ..|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99987532 2333333333333 45666 888999988753
No 226
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.6 Score=42.72 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=29.5
Q ss_pred HHHHHhhhhhHHHHHHHHHcc---cCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010459 66 LLVESYHEHQALNALIQRLNK---KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWK 130 (510)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 130 (510)
.+.++|+....|+.--..... .|.-...-+..|...+..+....+..-.+..+++.+...+-.++
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlR 91 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLR 91 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHh
Confidence 455566655555443332221 11112344444444444444455544444555555555444443
No 227
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.72 E-value=7.5 Score=42.46 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=60.2
Q ss_pred ccCHHHHHHHH----HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHH
Q 010459 276 HLRSSTMVAIL----DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351 (510)
Q Consensus 276 ~p~~~t~~~ll----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
.|+...+.-+. .-+...+.+++|--.|+..-+ ...-+.+|..+|+|.++..+..++......-...-
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 34444444333 333445566666555544311 12345667777777777777655543322223233
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409 (510)
Q Consensus 352 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (510)
..|+..+...++.-+|-++..+-... | .-.+..|++...|++|.++-..-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 55666666666666666666665443 1 12233345555666666554443
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.54 E-value=6.3 Score=36.63 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=99.0
Q ss_pred HhcCCCCcHHHHHHHHHhhc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCH----
Q 010459 114 KNSSRSRQIPQVFDMWKNIE-KSRINE------FNSQKIIGMLCEEGLMEEAVRAFQEMEGF--------ALKPSL---- 174 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 174 (510)
.+.|+.+.|...+.+..... ...|+. ..||.-.+.+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888877643 334443 24555555555554777766555543322 123332
Q ss_pred -HHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 175 -EIYNSIIHGYSKIGKF---NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250 (510)
Q Consensus 175 -~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 250 (510)
.+...++.+|...+.. ++|.++++.+...... ...++-.-+..+.+.++.+++.+++.+|...- .-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 4567788888887764 4566677777554322 24455556667777888899999999988652 1134455555
Q ss_pred HHHH---HHcCCHHHHHHHHHHHHHCCCccCH
Q 010459 251 IQEF---ACAGLLKRMEGTYKSMLTKRMHLRS 279 (510)
Q Consensus 251 i~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 279 (510)
+..+ ... ....|...++.+....+.|..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 5554 333 345677777777665555544
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=93.48 E-value=0.81 Score=38.02 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=44.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 230 (510)
..|++++|..+|.-+...++. |..-|..|-..+-..+++++|+..|...-..+.. |...+-..-.+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 456666666666655544322 4444555555555566666666666554333321 33333344455555666666666
Q ss_pred HHHHHHh
Q 010459 231 CLKMMKL 237 (510)
Q Consensus 231 ~~~~m~~ 237 (510)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6665554
No 230
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.42 E-value=4.2 Score=34.19 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 160 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
+....+.+.++.|+...|..+|+.+.+.|++. .+..+...++-||.......+-.+... ...+.++=-.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH-
Confidence 34455666777888888888888888888754 344555666777776666555444332 23333333333211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 240 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++...++
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113566777788888888888887665322 2223345666766777766666666665543
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.35 E-value=1.1 Score=40.99 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCccCHHHHHH
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRMHLRSSTMVA 284 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 284 (510)
.++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 466778888888999999999999988775 56888999999999999999999999888764 577777766655
Q ss_pred HHHH
Q 010459 285 ILDA 288 (510)
Q Consensus 285 ll~~ 288 (510)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.34 E-value=3.4 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=30.0
Q ss_pred hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV 414 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (510)
....|..+...++...+.+. -.|++...-.+..||.+.|...++-+++++.-+.|+
T Consensus 96 lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444445555555555432 234555566666777777777777777777766664
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.01 E-value=1.5 Score=40.21 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGCSPDHITYNL 249 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 249 (510)
.++..++..+...|+.+.+.+.++++.....- |...|..+|.+|.+.|+...|...|+++.+ .|+.|-..++..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34444444445555555555555555443321 444555555555555555555555544432 345555555444
Q ss_pred HHHH
Q 010459 250 LIQE 253 (510)
Q Consensus 250 li~~ 253 (510)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=7.3 Score=35.77 Aligned_cols=142 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
.....|++.+|...|.......-+ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777777777777655322 3455556677777777777777777776443222222222233344444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhcC
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g 293 (510)
...+-.+.-.. +-|...--.+-..+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444331 225555556667777777777777766655543 232 4444455555555544
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.98 E-value=12 Score=38.42 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
-|....-.|..++.+.|.-++|.+.|-+-- . | -..+.+|...+++.+|.++-++
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566677777777777776653321 1 1 1345566666777666666543
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.96 E-value=4.3 Score=40.36 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=95.7
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (510)
..-.++++++.+..+.-.-.+.+ +....+.++..+-+.|..+.|+++-. |.. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 33456666655554311100111 24557888888888888888887743 322 23445567888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
|.++-++. ++...|..|-+...+.|+++.|++.|.+.. -|..|+--|.-.|+.+.-.++-+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 88765443 367788888888888888888888888776 256677778888888777777777666
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 273 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
.| -++....++.-.|+.++..+++.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 65 24555566666788877777664
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.73 E-value=9.5 Score=36.43 Aligned_cols=296 Identities=8% Similarity=-0.068 Sum_probs=144.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 141 NSQKIIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY--SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 141 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
-|.+|-.++.. .||-..|.++-.+-.+. +.-|....-.|+.+- .-.|+.+.|.+-|+.|.. |..|-..=+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 35555555544 36666666665543321 123444444444433 346777777777777765 333332222
Q ss_pred H----HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHH--HHHHHHHHH
Q 010459 217 Q----AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSS--TMVAILDAY 289 (510)
Q Consensus 217 ~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~ 289 (510)
+ ..-+.|+.+.|.+.-+..-..- +.=...+.+.+...+..|+|+.|+++++.-++.. +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2 2235667777776666655432 2234566777777777777777777777655432 334432 222233322
Q ss_pred Hh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccccc
Q 010459 290 MN---FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366 (510)
Q Consensus 290 ~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 366 (510)
.. ..+...|+..-.+..+ +.||..- .--.-..++...|+..+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvP---------------------------------aav~AAralf~d~~~rK 281 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVP---------------------------------AAVVAARALFRDGNLRK 281 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccch---------------------------------HHHHHHHHHHhccchhh
Confidence 21 1233333333332222 2222111 11111234455556666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh-CCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT-RHVKPDI-VTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 367 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+-.+++.+-+..+.|+. -..|.+...-+.++.-+++..+ ..++||. .....+..+....|++..|..--+..
T Consensus 282 g~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 282 GSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 66777777777666653 1223333333444444444432 2345543 45555556666666666655444433
Q ss_pred CCccccccccChhHHHHHh-hccCchhHHHHHHhhcCCCCCCC
Q 010459 445 GFLFKTVEINTDPLVLAVY-GKGHFLRYCEEVYSSLEPYSREK 486 (510)
Q Consensus 445 ~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p 486 (510)
.. ..|....|..+-+.- +..|+-.++.+.+-+-.....+|
T Consensus 356 ~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 356 AR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 11 113333444444432 23477777777666655543344
No 238
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.72 E-value=5.3 Score=33.55 Aligned_cols=126 Identities=9% Similarity=0.098 Sum_probs=84.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHH
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG--KFNEALLFLNEMKEMNLSPQSD 210 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~ 210 (510)
.+++|+...+..+|+.+.+.|.+....+ +...++-+|.......+-.+.... -..-|+.++.++..
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~-------- 90 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT-------- 90 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------
Confidence 7889999999999999999998766544 445555666655554443332221 13344555555431
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
.+..++..+...|++-+|.++.+... ..+...-..++.+....+|...-..+|+-..+.+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~----~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYH----KVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcC----CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45677788888999999999988864 2333344667888888888777777776666543
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.50 E-value=4.5 Score=32.13 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD---TYDGLIQAYGKYKM 224 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~ 224 (510)
+.+..|+++.|++.|.+....- +.+...||.-..++--.|+.++|++=+++.++..-.-+.. .|..--..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5667888888888888876542 3467788888888888899999888888876642111222 33333445667788
Q ss_pred HHHHHHHHHHHHhCC
Q 010459 225 YDEIDMCLKMMKLDG 239 (510)
Q Consensus 225 ~~~a~~~~~~m~~~g 239 (510)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877666
No 240
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.40 E-value=4.4 Score=33.63 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=39.5
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 186 (510)
.-.+.++.+++..++..+...+.-.|...++...+ +.+.|++.+|+++|+++... .|....-..|+..|..
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 33455677777777776654333333444444333 44677777777777777654 2333434444444443
No 241
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=11 Score=36.18 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 010459 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGK 221 (510)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~ 221 (510)
...-..+.+..++..|+..+....+.... +..-|..-...+...|++++|+--.+.-++. +| ...+..-.-+++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 33556777788888888888888776432 4555666666777777888777666554432 22 22244555556666
Q ss_pred cCCHHHHHHHHHHHHh----------------CCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 010459 222 YKMYDEIDMCLKMMKL----------------DGCSPDHITYNLLI-QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA 284 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~----------------~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 284 (510)
.++..+|...++.-.. ..-+|...+|-.+= ..+.-.|++++|..+--...+.. ....+..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al 206 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEAL 206 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHH
Confidence 6667777766663210 00012223333221 33445566777666655555432 1123333
Q ss_pred HHHHHH--hcCChhHHHHHHHHHHhcCCCCCHHHHHHHH-------------HHHHhhcchhHHHHHHHHHHhhcCCc--
Q 010459 285 ILDAYM--NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-------------EVYIKNYMFSRLDDLGDDLASRIGRT-- 347 (510)
Q Consensus 285 ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-------------~~~~~~~~~~~a~~~~~~~~~~~~~~-- 347 (510)
.+++.+ -.++.+.+...|.+.++.+ |+...--.+- ....+.|.+..|.+.+.......+.+
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 333332 3456667777776665543 4333222111 11233455555555544444333322
Q ss_pred --hHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459 348 --ELVWCLRLLSHACLLSHRGIDSVVREMES 376 (510)
Q Consensus 348 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 376 (510)
...|........+.|+.++|+.--+....
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 22233334444455555555555554444
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.08 E-value=5.9 Score=39.94 Aligned_cols=163 Identities=8% Similarity=-0.026 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHh----hcchhHHHHHHHHHHhhcCCchHH
Q 010459 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEVYIK----NYMFSRLDDLGDDLASRIGRTELV 350 (510)
Q Consensus 281 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 350 (510)
.+..+++...-.||-+.+.+.+.+..+.+-.-.+. .|...+..++. ....+.+.+++.......|....-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 33445555555566666666665554422111111 11222222221 234455666655555554443333
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHHHCC---CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459 351 WCLRLLSHACLLSHRGIDSVVREMESAK---VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427 (510)
Q Consensus 351 ~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 427 (510)
.-.-...+...|+.++|.+.|++..... .+.....+--+.-.+.-..+|++|.+.|..+.+.. .....+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3333445566677777777777654311 11122233334455667788888888888888632 2244555555553
Q ss_pred -hhhcCcc-------chHHHHHHHc
Q 010459 428 -RRIGFDG-------TGALEMWKRI 444 (510)
Q Consensus 428 -~~~~~~~-------~~a~~~~~~~ 444 (510)
+...++. ++|.+++++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 3445555 7777777766
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=18 Score=38.08 Aligned_cols=225 Identities=8% Similarity=0.033 Sum_probs=117.7
Q ss_pred cceeeeccccccccCcchHHHHHHhhhccccccccCCCccccccchhh------hhHHHHHhhhhhHHHHHHHHHcccCC
Q 010459 16 HCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKH------TTLLVESYHEHQALNALIQRLNKKVS 89 (510)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (510)
.-+.+--+.+++..+..++.+. .+.++++.|+.. -..+.-+..++ -..-++-..+.....-|+..-...+.
T Consensus 286 ~~~i~~~~d~~n~~v~ys~vl~-~l~d~l~~w~~~--~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~ 362 (933)
T KOG2114|consen 286 SNRIFKAYDLRNRYVLYSSVLE-DLSDNLIEWSFD--CLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL 362 (933)
T ss_pred hhheeehhhhcCcccchHHhHH-HHHHHHHhcCCc--EEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC
Confidence 3444445577777777776666 588888888710 00000011111 11223333333444444444433333
Q ss_pred CchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459 90 CPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA 169 (510)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 169 (510)
.++... ...-..-+.+.+.|++++|.+-|-+-. .-+.|.. +|.-|.....+..--..++.+.+.|
T Consensus 363 d~d~~~--------~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 363 DEDTLA--------EIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred CHHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 222110 111223344566788888887665433 3334432 5556666667777777788888887
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 249 (510)
+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-....+..+-+.+-.++|..+-.... .+......
T Consensus 428 la-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~i 498 (933)
T KOG2114|consen 428 LA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDI 498 (933)
T ss_pred cc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHH
Confidence 65 66666788888888888877766665543 3321 1112345555555666666655544443 12222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 010459 250 LIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m 270 (510)
+ +-..+++++|++.+..|
T Consensus 499 l---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 499 L---LEDLHNYEEALRYISSL 516 (933)
T ss_pred H---HHHhcCHHHHHHHHhcC
Confidence 2 23445566666665544
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.93 E-value=5.4 Score=31.79 Aligned_cols=137 Identities=12% Similarity=0.194 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 231 (510)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+- -|. ..||++......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence 47777777777777652 35556666666555555555555555544221 121 233444443333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 310 (510)
+-.+- .+.......++.....|+-|.-.+++.++.+ +-+|++.....+..||.+.|+..++.+++.+..+.|+
T Consensus 79 ~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33322 2344556677888888888888888888775 3356777778888899999999999999988888875
No 245
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.86 E-value=7.3 Score=33.14 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 010459 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNL 249 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ 249 (510)
.|++.---.|-.+....|+..+|...|++...--+--|....-.+.++....++...|...++.+-+... -.+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666667777777777777777777765544455666666677777777777777777777665421 012223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHH
Q 010459 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 302 (510)
+-..+...|.+.+|..-|+.....-..|....|-. ..+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHH
Confidence 55677777777777777777765533333333322 3344556555544333
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.33 E-value=14 Score=35.46 Aligned_cols=63 Identities=10% Similarity=-0.136 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC---CHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP---DIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
...+|..+...+.+.|+++.|...+..+...+..+ ++...-.-.+.....|+..+|+..++..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677777788888888888888888777643111 1222222233344556667777766554
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.32 E-value=26 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHh
Q 010459 206 SPQSDTYDGLIQAYGKYK--MYDEIDMCLKMMKL 237 (510)
Q Consensus 206 ~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~ 237 (510)
.|+ .-.-.+|..|.+.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 34457888888887 67777777776664
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.12 E-value=11 Score=33.87 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.|+..+. -.+.|++++|.+.|+.+.......| ...+--.++.++-+.++++.|+..+++..+.-..-...-|-.-|.+
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444433 3466777777777777765332222 3344555666677777777777777777655322222334444444
Q ss_pred HHh-------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHH
Q 010459 184 YSK-------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT-Y-NLLIQEF 254 (510)
Q Consensus 184 ~~~-------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~-~~li~~~ 254 (510)
.+. ..|...+.+-|..|.+ +|.-|=.+.-..+|..-...+. |... + -.+..-|
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~------d~LA~~Em~IaryY 177 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN------DALAGHEMAIARYY 177 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 432 1222233333333211 2222212222222222222211 0000 1 1234566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
.+.|.+..|..-+++|.+. .+-. ...+-.+..+|-..|-.++|...-+-+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7777777777777777665 1111 2334455666667777666666655443
No 249
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=1.4 Score=40.48 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=74.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA---LKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 207 (510)
.|......+-..++..-....+++++...+-.+...- ..|+ .++|--++. .-++++++.++..=..-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 4556666667777777777888999988887776431 1122 233333332 236778998888888999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
|-+|++.||+.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776643
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=90.73 E-value=17 Score=35.82 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
++.++........+.|......+..+.+..++.+.|...|++....++. ...+|...-..+.-+|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444555555555555555555555566666666666554332 23333333334455666666666666643
No 251
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.64 E-value=16 Score=34.93 Aligned_cols=290 Identities=11% Similarity=-0.018 Sum_probs=167.2
Q ss_pred hHHHHHHHHHh--cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 010459 105 HFWAVIRFLKN--SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIY--- 177 (510)
Q Consensus 105 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~--- 177 (510)
-|.++-.++.. .|+-..|++.-.+-. .-+..|..-.-.|+.+-.. .|+.++|.+-|+.|.. |..+-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 45566665544 566677776665443 2344555555555555443 5999999999999984 33332
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHH
Q 010459 178 -NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHIT--YNLLIQE 253 (510)
Q Consensus 178 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~--~~~li~~ 253 (510)
..|.-..-+.|+-+.|...-++.-+.-.. -...+.+++...+..|+|+.|+++.+.-.+.. +.+++.- -..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 33333445678888888777776544322 35678899999999999999999999876542 3454332 2233333
Q ss_pred HHH---cCCHHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459 254 FAC---AGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329 (510)
Q Consensus 254 ~~~---~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 329 (510)
-+. .-+...|...-.+-. .+.||.. .-.....++.+.|++.++-.|++.+-+..-.|+. . ++..+.+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC
Confidence 221 234555555444433 3455532 3334567888999999999999999887655543 2 2334445554
Q ss_pred h--hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCChhHHHHHH
Q 010459 330 F--SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA-YLKMKDFKHLRVLL 406 (510)
Q Consensus 330 ~--~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~ 406 (510)
. +.+.+. +.+.++.+.+..+.-+...+-...|++..|..--+...+. .|....|-.|.+. -+..|+-.++...+
T Consensus 310 ta~dRlkRa-~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 TALDRLKRA-KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cHHHHHHHH-HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 3 222222 3334444445555555555555555555444433333322 3444445444442 23346666666555
Q ss_pred Hhhhh
Q 010459 407 SELPT 411 (510)
Q Consensus 407 ~~m~~ 411 (510)
-+-.+
T Consensus 387 Aqav~ 391 (531)
T COG3898 387 AQAVK 391 (531)
T ss_pred HHHhc
Confidence 55544
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.61 E-value=17 Score=35.08 Aligned_cols=171 Identities=9% Similarity=0.030 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCE---EGLMEEAVRAFQEMEGFALKPSLEI 176 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 176 (510)
++.+.-.++-.|....+++...++.+.+...... .-...+--...-++-+ .|+-++|++++..+....-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3334445666788899999999999999763211 1122222233445556 7999999999999666666788889
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---HH-HHhCC
Q 010459 177 YNSIIHGYSK---------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM----YDEIDMCL---KM-MKLDG 239 (510)
Q Consensus 177 ~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----~~~a~~~~---~~-m~~~g 239 (510)
|..+...|-. ....++|.+.|.+--+ +.||..+=-.+...+.-.|. -.+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9888877643 2236778888876533 33444332222222223332 12233332 22 22333
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 240 C---SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 240 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
. ..|-..+.+++.++.-.|+.++|.+..++|....
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 3466677889999999999999999999999773
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.49 E-value=5.5 Score=36.06 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSP-QSDTYDGL 215 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~l 215 (510)
..|+.-++.| +.|++..|...|....+... ......+-.|...+...|++++|..+|..+.+.- -.| -+.++--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577666655 66778888888888876631 1123445567888888888888888888876542 122 23566667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.....+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777888888888888888765
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=15 Score=38.63 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG----KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
...-|+...+...++-|+.+-+. .+ .|..+...+...|+ +.|+.++|..-+-+-... ++| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 34556666667777777666543 22 24445555555444 568888887766554421 122 33566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcchh
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIKNYMFS 331 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~ 331 (510)
-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..+.+.+..+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 677777777777778888888776 55566778888888888887766665433 2211 12 233444555555555
Q ss_pred HHHHH
Q 010459 332 RLDDL 336 (510)
Q Consensus 332 ~a~~~ 336 (510)
+|..+
T Consensus 481 ~a~~L 485 (933)
T KOG2114|consen 481 EAELL 485 (933)
T ss_pred HHHHH
Confidence 55444
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.39 E-value=20 Score=37.10 Aligned_cols=184 Identities=13% Similarity=0.048 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC---
Q 010459 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGM-LCEEGLMEEAVRAFQEMEG-------FALKPSLEIYNSIIHGYSKIG--- 188 (510)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g--- 188 (510)
..|.+.++...+.....+-...-.....+ ++...|++.|+..|....+ .| +....+.+-..|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 45666666655421122222222233333 5566788888888888766 44 3335556666666643
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHH
Q 010459 189 --KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA--CAGLLKRM 263 (510)
Q Consensus 189 --~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A 263 (510)
+.+.|+.++...-+.|. |+....-..+..... ..+...|.++|...-+.|. +...-+-+++--.. -..+.+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 55668888877777664 355444444444333 3456778888888877773 33333333322222 23367778
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459 264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310 (510)
Q Consensus 264 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 310 (510)
..++.+.-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888777776 3332222333444444 666666666666666553
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=16 Score=34.13 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=109.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYKMYD 226 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~li~~~~~~g~~~ 226 (510)
..|+..+|-..++++.+. .+.|..+|+-.=++|.-.|+.+.-...+++.... -.||...|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467888888888888865 3568889999999999999999999999888654 234443443 3333445789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK---RMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
+|++.-++..+.+ +-|.-.-.++...+--+|+..++.++..+-... +--.-..-|-...-.+...+.++.|++||+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888765 456666677777788889999999887654321 111112334444445666789999999998
Q ss_pred HHH
Q 010459 304 RLL 306 (510)
Q Consensus 304 ~m~ 306 (510)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.95 E-value=1.4 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555555555555555555444
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=89.85 E-value=19 Score=35.52 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=57.4
Q ss_pred hhH--HHHHHHHHhcC-----CCCcHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 010459 104 DHF--WAVIRFLKNSS-----RSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCE---------EGLMEEAVRAFQEME 166 (510)
Q Consensus 104 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 166 (510)
..| ..++++..... ..+.|..+|.+........|+- ..|..+-.++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 45555554422 2345556666655333444443 223222222211 123344455555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 167 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+.+ .-|......+-.+....++++.|..+|++....+ || ..+|-..-....-+|+.++|.+.+++..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444 2245555555444455555555555555555432 22 1222222222233455555555555533
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.70 E-value=8.5 Score=31.31 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 187 (510)
-.....+.|++++|.+.|+.+.......| .....-.|+.+|-+.+++++|...+++..+....--.+-|-..+.|++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33444567788888888887765322222 23445567778888888888888888877764332234555555555443
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.39 E-value=23 Score=34.73 Aligned_cols=370 Identities=11% Similarity=0.065 Sum_probs=190.0
Q ss_pred hHHHHHHH--HHhcCCCCcHHHHHHHHHhhc-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 010459 105 HFWAVIRF--LKNSSRSRQIPQVFDMWKNIE-KSRI------------NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF- 168 (510)
Q Consensus 105 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~-~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 168 (510)
.|-.+..+ +-+.+.+++|.+.+..+.... +..| |-+.-+..++.+.+.|.+.+++.++++|...
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34444443 245678888888887776521 2211 2223366777788888888888888777643
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--
Q 010459 169 ---ALKPSLEIYNSIIHGYSKIGK---------------FNEALLFLNEMKEM------NLSPQSDTYDGLIQAYGKY-- 222 (510)
Q Consensus 169 ---g~~~~~~~~~~li~~~~~~g~---------------~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~-- 222 (510)
...-|..+||.++-.+.+.=- ++.++-...+|... .+.|...-+..++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 233677788876555543211 11122222222111 1223333333333322211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc----CHHHHHHHHHHHHhcCChhH
Q 010459 223 KMYDEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL----RSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 223 g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~ 297 (510)
.+..--.++++.-...-+.|+-. ....++..+.. +.+++..+-+.+....+.+ =..+|..++..+.+.++..+
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11111222222222233344422 22344444444 5666666665554432221 24688999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHH-------HHHHHHHHhh----cchhHHHHHHHHHHhhcCCchHHHHHHH---HHhhhhcc
Q 010459 298 MEKFYKRLLNSRTPLKEDLV-------RKLAEVYIKN----YMFSRLDDLGDDLASRIGRTELVWCLRL---LSHACLLS 363 (510)
Q Consensus 298 a~~~~~~m~~~~~~~~~~~~-------~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~ 363 (510)
|.+.+.-+.-- .|+...- ..+.+..+.- .+...-..++...............-++ .-+...|.
T Consensus 317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCC
Confidence 99988776543 2332222 1222222210 1111222222323322222222222222 23445555
Q ss_pred -cccHHHHHHHHHHCCCCcCHHHHHHHH----HHHHcC---CChhHHHHHHHhhhhCCCCCCH----HHHHHHHHh--hh
Q 010459 364 -HRGIDSVVREMESAKVRWNVTTANIIL----LAYLKM---KDFKHLRVLLSELPTRHVKPDI----VTIGILYDA--RR 429 (510)
Q Consensus 364 -~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~--~~ 429 (510)
-++|+++++.+.+--.- |...-|.+. .+|.+. ....+-+.+-+-..+.|+.|-. ..-|.|-+| +.
T Consensus 395 ~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred ccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 57788888887764211 333333322 244332 3344445555555678887744 345566665 45
Q ss_pred hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
..|++.++.-.-..+. .+.|++.++..+.-......++++|...+..++.
T Consensus 474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 6788888877655552 2335667777776666678899999999988764
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.03 E-value=7.2 Score=33.34 Aligned_cols=60 Identities=15% Similarity=0.392 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
.+..+.+.|++.|+.+.|++.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555666666666666666666654432222 233445555555556665555555444
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.65 E-value=1.1 Score=26.51 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNE 199 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~ 199 (510)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.53 E-value=15 Score=36.36 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRL 305 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 305 (510)
+.-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333445555555555555433211 11223344555555555555555555443
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.35 E-value=12 Score=30.37 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=25.1
Q ss_pred hcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 186 KIGKFNEALLFLNEMKEMNL--SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
+.|++++|.+.|+.+...-. .-...+--.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555544311 112233344555555555555555555555544
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.33 E-value=1.5 Score=27.37 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
..+..+|...|++++|++++++.++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 266
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.22 E-value=33 Score=36.02 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE 152 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 152 (510)
..+.+|-.|.++|.+++|.++..... .........+-..+..|...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhC
Confidence 34455555555555555555553332 33344444455555555443
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.09 E-value=17 Score=31.60 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
..+......+...++...+...+...... ........+..+...+...++...+...+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444555555555444444331 112233333444444444444444444444444
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.02 E-value=20 Score=32.34 Aligned_cols=186 Identities=13% Similarity=0.183 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
-...|+.-+.- .+.|++++|.+.|+.+..+-+ +-...+--.++.++-+.++.+.|+..+++....-..-...-|..-
T Consensus 34 ~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 33444444333 367888888888888876521 112345555666777788888888888777665333233455555
Q ss_pred HHHHHcc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 010459 216 IQAYGKY-------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288 (510)
Q Consensus 216 i~~~~~~-------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 288 (510)
|.+.+.- .+...+...|..+. .+|.-|=.+.-..+|..-....... =...=..+.+-
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5555522 12222222222222 1111111111122222222111100 00011235677
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 289 YMNFGMLDKMEKFYKRLLNSRTPLKE---DLVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 289 ~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
|.+.|.+..|..-++.|++. .+-+. ..+-.+..+|-+.|..++|.+....+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88999999999999999886 33333 344567788888888888887755444
No 269
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=27 Score=33.80 Aligned_cols=167 Identities=11% Similarity=-0.034 Sum_probs=91.6
Q ss_pred CCHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 010459 207 PQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE--FACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283 (510)
Q Consensus 207 p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 283 (510)
|...+|-.|= .++.-.|+.++|.++-....+.. ....+...+++ +--.++.+.|...|++-...+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3344443332 23345688888888777766432 11223333433 334677888888888776553 3432222
Q ss_pred ---HHHHH----------HHhcCChhHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459 284 ---AILDA----------YMNFGMLDKMEKFYKRLLNS---RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347 (510)
Q Consensus 284 ---~ll~~----------~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
...+. ..+.|.+..|.+.+.+.+.. ...++...|--......+.|+..++..--.........-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 12222 24578899999999888753 334455555555556666777776655433322222211
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHCC
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAK 378 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 378 (510)
.-.+-.-..++...+++++|.+-|+...+..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222222334555577778888777766553
No 270
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=7.2 Score=37.37 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.+++.+.-+|.+.+++..|++.-...++.+. +|+-..=-=-.+|...|+++.|...|+.+.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544431 23333333444555555555555555555544
No 271
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.78 E-value=10 Score=30.91 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHcCCC-hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhc
Q 010459 382 NVTTANIILLAYLKMKD-FKHLRVLLSELPTRHVKPDIVTIGILYDARRIG 431 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 431 (510)
+..+|.+++.+..+... --.+..+|+.|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 56778888888877666 445788888888888888889999999887766
No 272
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.77 E-value=22 Score=32.68 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
-.++..+...+|..+++.+++..-.+.++.-... +...|...|..+|..-...|+..-..++.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3445555555555555555555555555544433 33445555555555555555554444443
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=13 Score=34.77 Aligned_cols=152 Identities=11% Similarity=-0.035 Sum_probs=98.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH--HHHHH--HHHHHHhcCChh
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS--STMVA--ILDAYMNFGMLD 296 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~--ll~~~~~~g~~~ 296 (510)
-.|+..+|...++++.+.- +.|...++-.-++|.-+|+.+.-...++++... ..||. .+|.. ..-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4578888888888887653 668888998899999999999999999888744 12232 33333 333444678999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHHHH
Q 010459 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSVVR 372 (510)
Q Consensus 297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 372 (510)
+|++.-++..+.+ +.|.-...++...+--+|++.++.++.......-... ..-|--....+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888877655 4455566677777777888888877733322111100 0011111223334467788888887
Q ss_pred HHH
Q 010459 373 EME 375 (510)
Q Consensus 373 ~m~ 375 (510)
+=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.64 E-value=23 Score=32.59 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-----NSRTPLKEDLV 317 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~ 317 (510)
++..-+.|..+|.+.+|.++.+...+.+ +.+...+-.++..+...||--.+..-++++. +.|+..|..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4455567777888888888777776653 3366677777777777777666655555543 24655554433
No 275
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=7 Score=37.47 Aligned_cols=53 Identities=11% Similarity=-0.037 Sum_probs=23.7
Q ss_pred hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
+.+.+++..|++..++..+.+.. |+...--=-.+|...|+++.|+..|+.+++
T Consensus 267 ~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 267 YLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33333334444444444443322 333333334455555555555555555554
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.04 E-value=12 Score=34.02 Aligned_cols=97 Identities=10% Similarity=0.133 Sum_probs=64.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-ccC-HHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM-HLR-SSTMVAIL 286 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll 286 (510)
.|+.-+..| +.|++.+|...|....+.... .....+-.|-.++...|++++|..+|..+.+.-. .|. +.++.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577666544 456788888888887765311 1122333477788888888888888888776421 121 34666667
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 010459 287 DAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888887765
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.66 E-value=18 Score=30.46 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=54.8
Q ss_pred HhcCCCCcHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCC
Q 010459 114 KNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSII--HGYSKIGK 189 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li--~~~~~~g~ 189 (510)
++.+..++|+.-|..+.+ .|...=+ -..--.-......|+...|...|+++-.....|-.. -..-|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445556666666666654 3332111 111122233445566666666666665443222221 011111 12234455
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 237 (510)
++......+-+-..+-..-...-.+|--+-.|.|++.+|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555544443333222233334455555555666666666655553
No 278
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.58 E-value=14 Score=30.23 Aligned_cols=94 Identities=10% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 010459 200 MKEMNLSPQSD--TYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-----SPDHITYNLLIQEFACAGL-LKRMEGTYKSML 271 (510)
Q Consensus 200 m~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 271 (510)
|++.+..++.. ..|+++.-...-++.....++++.+..... ..+..+|.+++.+.....- ---+..+|+.|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444433 336666666666666666666666532100 2355667777777755554 345667777777
Q ss_pred HCCCccCHHHHHHHHHHHHhcC
Q 010459 272 TKRMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 272 ~~g~~p~~~t~~~ll~~~~~~g 293 (510)
+.+.+++..-|..+|++|.+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCC
Confidence 7777777888888888776653
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.56 E-value=12 Score=32.07 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
..+..+..-|++.|+.++|++.|.++.+....|. ...+-.+|+...-.+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566666777777777777777777766543332 2344556666666677777666665554
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.49 E-value=19 Score=30.41 Aligned_cols=124 Identities=11% Similarity=0.072 Sum_probs=59.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH--HHHHcCCH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSD-TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT-YNLLIQ--EFACAGLL 260 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~--~~~~~g~~ 260 (510)
++.+..++|+.-|.++.+.|...=++ .---.-......|+...|...|+++-.....|-..- ..-|=. .+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665554331000 001111223445666666666666654432232221 111111 23455666
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
++.....+.+-..+-+.-...-..|--+-.+.|++..|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666555554443333444445555555667777777777666553
No 281
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=86.42 E-value=8.1 Score=37.08 Aligned_cols=262 Identities=12% Similarity=0.027 Sum_probs=154.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHH--HH--CCCC-CCHHHHHHHHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLE----IYNSIIHGYSKIGKFNEALLFLNEM--KE--MNLS-PQSDTYDGLIQA 218 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m--~~--~g~~-p~~~t~~~li~~ 218 (510)
-+||.|+......+|+...+-|.+ |.. .|..|-++|.-.+++++|++....= +. .|-+ -...+...|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 488999999999999999988744 443 4555666777777888888764321 11 0100 012223334444
Q ss_pred HHccCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH---
Q 010459 219 YGKYKMYDEIDMCLKM----MKLDGCS-PDHITYNLLIQEFACAGL--------------------LKRMEGTYKSM--- 270 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 270 (510)
+--.|.+++|.-.-.+ ..+.|-. .....+-.+-..|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777654222 2222211 112223334444544432 23344555432
Q ss_pred -HHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhhcchhHHHHHHHHHH--
Q 010459 271 -LTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTP-LKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-- 341 (510)
Q Consensus 271 -~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-- 341 (510)
.+.|-. .-...|..|-+.|.-.|+++.|...++.=.+ .|-. .....+..|-.++.-.|+++.|.+.++...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 222211 1124566677777778999999988875432 2321 123455667777777788888887766543
Q ss_pred --hhcCC--chHHHHHHHHHhhhhcccccHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 342 --SRIGR--TELVWCLRLLSHACLLSHRGIDSVVREMESA----K-VRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 342 --~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
....+ ...++.++...|.-..++++|+..+.+-... + ..-....+.+|-.+|...|..++|+.+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22222 3556777888888888888888877653321 1 11245678889999999999999887766554
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.15 E-value=17 Score=29.73 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=33.2
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
..++++++..+++.|.-.+.-.|...++-..+ +.+.|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 36777777777777754333334444554443 44778888888888887765
No 283
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.10 E-value=28 Score=32.08 Aligned_cols=96 Identities=7% Similarity=0.036 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHHh-cC-CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 010459 102 TKDHFWAVIRFLKN-SS-RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-ALKPSLEIYN 178 (510)
Q Consensus 102 ~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~ 178 (510)
|+.+-..+++.... .+ ....-.++.+.+....+..++..+-..+|..+++.+++..-.++++.-... +..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 33344444444433 11 222333344444433334455555556666666666666666666555433 3444555666
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFL 197 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~ 197 (510)
..|..-.+.|+..-..++.
T Consensus 243 ~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHcCCHHHHHHHh
Confidence 6666666666655444333
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.89 E-value=2.1 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.57 E-value=27 Score=33.13 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=24.8
Q ss_pred HHHhhhhcccccHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459 355 LLSHACLLSHRGIDSVVREMESAK-----VRWNVTTANIILLAYLKMKDFKHLRVLLSE 408 (510)
Q Consensus 355 i~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (510)
..++...+.++++++.|+...+.- .-....++..|-..|.+..++++|.-+...
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 334444444555555555433211 111233455555555555566655544443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.25 E-value=20 Score=29.77 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=8.3
Q ss_pred ccCCHHHHHHHHHHHHh
Q 010459 221 KYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~ 237 (510)
+.|++.+|.++|+++.+
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44455555555555443
No 287
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.11 E-value=18 Score=28.91 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=63.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCC
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL---IQEFACAGL 259 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~ 259 (510)
+.+..|+++.|++.|.+....-. -....||.-..++--.|+.++|+.=+++..+..-..+.....+. -..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45678888999999988876532 26778888888888888888888888877764222333333322 234666778
Q ss_pred HHHHHHHHHHHHHCC
Q 010459 260 LKRMEGTYKSMLTKR 274 (510)
Q Consensus 260 ~~~A~~~~~~m~~~g 274 (510)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888777776665
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=34 Score=31.55 Aligned_cols=143 Identities=12% Similarity=0.051 Sum_probs=96.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
......|++.+|..+|......... +...--.+..+|...|+.+.|..++..++..--........+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3556789999999999998776433 455667789999999999999999999986432223333334455555665555
Q ss_pred HHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhc
Q 010459 262 RMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 262 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~ 328 (510)
+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+... .-|...-..|++.+.--|
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555554433 3 666667788889999999999888777765421 233444455555554444
No 289
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.12 E-value=0.79 Score=36.35 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=29.4
Q ss_pred hhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHH
Q 010459 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVI 499 (510)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 499 (510)
.-+.|.-.+|-.+|++|++.|-+|| .|+.|+.+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 3445777789999999999999999 8899998753
No 290
>PHA02875 ankyrin repeat protein; Provisional
Probab=84.02 E-value=7.6 Score=38.50 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD--TYDGLIQAYGKYK 223 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g 223 (510)
..++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...++.|
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 344567765554444 4566666533 334555556677764 444555666655432 1123455556677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH--HHHHHHHHHhcCChhHH
Q 010459 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST--MVAILDAYMNFGMLDKM 298 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a 298 (510)
+.+.+..+++.-....-..+..-++ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-.
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 7776655554321100001111222 333344556553 4444455565544321 12234444456665443
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.97 E-value=27 Score=30.18 Aligned_cols=167 Identities=15% Similarity=0.081 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
...+......+...+++..+...+...... ........+......+...++...+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 456666666677777777777776666542 123344556666666666666777777777666544332 112222222
Q ss_pred -HHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 218 -AYGKYKMYDEIDMCLKMMKLDGC--SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 218 -~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
.+...|+++.|...|++...... ......+......+...++.+.+...+..............+..+-..+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55566666666666666543210 012222223333344455555555555555543211123344444444444444
Q ss_pred hhHHHHHHHHHH
Q 010459 295 LDKMEKFYKRLL 306 (510)
Q Consensus 295 ~~~a~~~~~~m~ 306 (510)
.+.+...+....
T Consensus 218 ~~~a~~~~~~~~ 229 (291)
T COG0457 218 YEEALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.86 E-value=53 Score=33.42 Aligned_cols=368 Identities=10% Similarity=0.002 Sum_probs=182.9
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE-EGLMEEAVRAFQEMEGF-AL-KPSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g 188 (510)
.=.+.|..+.+.++|++-. .+++.++..|...+..+.. .|+.+...+.|+..... |. -.+...|...|.--..++
T Consensus 88 ~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk 165 (577)
T KOG1258|consen 88 YEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK 165 (577)
T ss_pred HHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc
Confidence 3345677788888888776 5777777777776665554 37777777788777643 21 124556777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---c------CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK---Y------KMYDEIDMCLKMMKLD---G-CSPDHITYNLLIQEFA 255 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~ 255 (510)
++.....++++.++-- ..-|+..-.-|.+ . ...+++.++-...... + ..+....+..-++--.
T Consensus 166 s~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~ 241 (577)
T KOG1258|consen 166 SWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST 241 (577)
T ss_pred cHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc
Confidence 8888888888876632 2233333322221 1 1122222221111100 0 0001111111111000
Q ss_pred H-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC----CCCHHHHHHHHHHHHhh
Q 010459 256 C-AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS---RT----PLKEDLVRKLAEVYIKN 327 (510)
Q Consensus 256 ~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~----~~~~~~~~~li~~~~~~ 327 (510)
. .+..+++.....+... .--.++-..-...+.+..++.-+++ .+ .++..+|..-++--.+.
T Consensus 242 ~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~ 310 (577)
T KOG1258|consen 242 DPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITL 310 (577)
T ss_pred CccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhc
Confidence 0 0011111111000000 0000111111112222222222221 11 12345556666666666
Q ss_pred cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChhHHHHH
Q 010459 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV--RWNVTTANIILLAYLKMKDFKHLRVL 405 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (510)
|+++.+.-+++...-....-+..|--.+.-....|+.+-|..+...-.+--. .|....+.+.+ .-..|+.+.|..+
T Consensus 311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVI 388 (577)
T ss_pred ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHH
Confidence 7766666666655544445556666555555555777666666655444332 34444444444 3346789999999
Q ss_pred HHhhhhCCCCCCHHHHH-HHHHhhhhcCccchHH---HHHHHcCCccccccccChhHHHH-----HhhccCchhHHHHHH
Q 010459 406 LSELPTRHVKPDIVTIG-ILYDARRIGFDGTGAL---EMWKRIGFLFKTVEINTDPLVLA-----VYGKGHFLRYCEEVY 476 (510)
Q Consensus 406 ~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~ 476 (510)
++...+.- |+..-.. -=+....+.|+.+.+. +++....... .+....+.+.- .+.-+++.+.|..++
T Consensus 389 lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l 464 (577)
T KOG1258|consen 389 LQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIIL 464 (577)
T ss_pred HHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99888642 5543211 1122344556666666 4444332111 12222222222 334478889999999
Q ss_pred hhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459 477 SSLEPYSREKKRWTYQNLIDLVIKHNG 503 (510)
Q Consensus 477 ~~m~~~g~~p~~~~~~~li~~~~~~g~ 503 (510)
.++.+. .+++..-|..+++-...++.
T Consensus 465 ~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 465 LEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 988874 55566677777777766653
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.83 E-value=1 Score=36.98 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=67.8
Q ss_pred HHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccC
Q 010459 388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH 467 (510)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 467 (510)
.+|..+.+.+..+....+++.+...+-.-+....+.++..|.+.++.++..++++.. +......++..|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 467778889999999999999997766667888999999999998889999888743 2233456778888888
Q ss_pred chhHHHHHHhhcCC
Q 010459 468 FLRYCEEVYSSLEP 481 (510)
Q Consensus 468 ~~~~A~~~~~~m~~ 481 (510)
.+++|.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 88888888887664
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.74 E-value=47 Score=32.69 Aligned_cols=321 Identities=12% Similarity=0.021 Sum_probs=175.1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSI 180 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~l 180 (510)
..+..+...|++.+++.+++++.. .-++ .+..+|+.++-+++++= |-++.+ ..+-|+ |--|
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~-~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pd---yYem 200 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIE-RLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPD---YYEM 200 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHH-HHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChH---HHHH
Confidence 556788899999999999999886 3343 78999999988888752 222221 112222 2233
Q ss_pred HHHHHhcCC---------hHHHHHHHHHH----------------------HHCCCCCCHH-HHHHHHHHHHccCCHHHH
Q 010459 181 IHGYSKIGK---------FNEALLFLNEM----------------------KEMNLSPQSD-TYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 181 i~~~~~~g~---------~~~a~~~~~~m----------------------~~~g~~p~~~-t~~~li~~~~~~g~~~~a 228 (510)
|-.|.+.=+ +.-+.+++... ...-+.|+-. ....|+.-+.+ +.+++
T Consensus 201 ilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 201 ILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 333322110 11112222221 2223445432 22344444444 55666
Q ss_pred HHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-----HHHHHHHHHHH-h---cCCh
Q 010459 229 DMCLKMMKLDGCS----PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-----STMVAILDAYM-N---FGML 295 (510)
Q Consensus 229 ~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~-~---~g~~ 295 (510)
.++-+.+....++ .=+.++..+++..++.++...|...+.-+......... .+-.++-+..+ . .-+.
T Consensus 279 ~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 279 GHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 6555555433222 23567888999999999999999888777644221110 00111112222 1 0112
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHhhcc-hhHHHHHHHHHHhhcCCchHHHHHHH----HHhhhhccc---
Q 010459 296 DKMEKFYKRLLNSRTPLKEDLVRKL---AEVYIKNYM-FSRLDDLGDDLASRIGRTELVWCLRL----LSHACLLSH--- 364 (510)
Q Consensus 296 ~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~--- 364 (510)
..-..++......++.. .....-| ..-+.+.|. -+++.++++.+....+.|..+-|... ..|...-..
T Consensus 359 r~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 22233344333332211 1111122 222334444 67777887777766666655554432 233332222
Q ss_pred ccHHHHHHHHHHCCCCcC----HHHHHHHHHH--HHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHH
Q 010459 365 RGIDSVVREMESAKVRWN----VTTANIILLA--YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 438 (510)
.+-+.+-+-+.+.|+.|- ...-|.|-+| +...|++.++.-.-..+.+ |.|.+.+|..+--++....++++|.
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 233344455567787663 3345555553 3467899988777666665 7899999988777777788999999
Q ss_pred HHHHHcC
Q 010459 439 EMWKRIG 445 (510)
Q Consensus 439 ~~~~~~~ 445 (510)
+++..++
T Consensus 516 ~~l~~LP 522 (549)
T PF07079_consen 516 EYLQKLP 522 (549)
T ss_pred HHHHhCC
Confidence 9999874
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.09 E-value=39 Score=31.33 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCC-----
Q 010459 185 SKIGKFNEALLFLNEMKEMN--LSPQSD------TYDGLIQAYGKYKMYDEIDMCLKMMKLD--------GCSPD----- 243 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g--~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~----- 243 (510)
.+.|+.+.|..++.+....- ..|+.. .|+.-...+.+..++++|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46778888888887775533 223221 2233333333333777777777664322 11222
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 244 HITYNLLIQEFACAGLLK---RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 244 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
..+...++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+.+.+++.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234455666666666544 344555555433222 1334444455566667777777777777765
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=20 Score=36.41 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=89.1
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010459 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194 (510)
Q Consensus 115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 194 (510)
-.|+++.|-.++..+ | ....+.++..+-+.|-.++|+++ .+|..-- .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I-------~-k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTI-------P-KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccC-------c-hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 356666665544322 1 34556677777777777777654 2222211 12334667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
++..+. -+..-|..|-++..+.+++..|.+.|.... -|..|+-.+...|+.+....+=..-.+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 766554 255677777777777788877777776655 24566666777777666666655556555
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
.. | ..| -+|...|+++++.+++..
T Consensus 723 ~~-N-~AF----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KN-N-LAF----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-c-hHH----HHHHHcCCHHHHHHHHHh
Confidence 43 2 222 345566777777776643
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.82 E-value=2 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHH
Q 010459 382 NVTTANIILLAYLKMKDFKHLR 403 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~ 403 (510)
|...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6667777777777777777764
No 298
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.32 E-value=31 Score=34.10 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=76.6
Q ss_pred HhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 010459 114 KNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE--IYNSIIHGYSKIGK 189 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~ 189 (510)
++.|+.+-+..+++ .|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+.. ...+.+...+..|+
T Consensus 10 ~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 10 ILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455544444443 555554432 33445555666776543 3334445444432 11234455556777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDT---YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT--YNLLIQEFACAGLLKRME 264 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~ 264 (510)
.+.+..+++ .|...+... -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 665544443 332111100 122334444556654 3334444554544321 112334445666665444
Q ss_pred HHHHHHHHCCCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 265 GTYKSMLTKRMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 265 ~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
.+ .+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++
T Consensus 153 ~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n 195 (413)
T PHA02875 153 LL----IDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANID 195 (413)
T ss_pred HH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCC
Confidence 33 33443332 22223333 333445543 4445556666554
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.20 E-value=16 Score=36.27 Aligned_cols=126 Identities=10% Similarity=-0.023 Sum_probs=66.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYN--SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
.+..+.+|.++|++..+.| ...+. .... ..|. .++....+...|=..+-..|-.++-+.|+.++|
T Consensus 212 eA~Ti~Eae~l~rqAvkAg----E~~lg~s~~~~---~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EA 278 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAG----EASLGKSQFLQ---HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREA 278 (539)
T ss_pred cccCHHHHHHHHHHHHHHH----HHhhchhhhhh---cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHH
Confidence 3566888998888877543 11111 0000 0111 111222222222233334455666677888888
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459 229 DMCLKMMKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY 289 (510)
Q Consensus 229 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~ 289 (510)
.+.|.+|.+.... -+......||.++...+.+.++..++.+-.+...+ .-...|+..+--.
T Consensus 279 Ik~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 279 IKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 8888777654211 13335556777788888888887777776433221 1234566655433
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.79 E-value=3.9 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444444444555555544444433
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=39 Score=30.31 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWK 130 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 130 (510)
.|.....+|....++++|...+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45555666777777777777666554
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.66 E-value=16 Score=27.66 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
+..+-++.+....+-|++....+.+++|.+.+++..|.++++-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555556667777777777777777777777777776665
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.84 E-value=18 Score=31.30 Aligned_cols=77 Identities=10% Similarity=-0.046 Sum_probs=49.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
+.|+ +.|++.|-.+...+.--|+...-.|...|. ..+.+++..++....+. +-.+|+..+.+|.+.|-+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 567777777766665556656566665555 35677777777666542 225677777777777777777777
Q ss_pred HH
Q 010459 263 ME 264 (510)
Q Consensus 263 A~ 264 (510)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.40 E-value=15 Score=27.46 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+.+-++.+...++.|++....+-+++|-+.+++..|.++|+..+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555544
No 305
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.04 E-value=55 Score=34.09 Aligned_cols=74 Identities=12% Similarity=-0.099 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHH
Q 010459 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR 443 (510)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 443 (510)
....+.+..+-+-.+...-.-++..|.+.|..+.|.++.+.+-.+-+ ...-|..-+.-+.++|+....-.+...
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555443334555556666777777777777777766643211 223455555555566655554444333
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.04 E-value=4.9 Score=24.22 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.64 E-value=18 Score=27.08 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
++.+-++.+....+-|++....+.++||.+.+|+..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444555555566666666666666666666666666666555
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.33 E-value=72 Score=31.96 Aligned_cols=170 Identities=9% Similarity=0.012 Sum_probs=125.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 212 (510)
.....|-...-+++..++.+....-...+..+|...| -+...|-.++..|.++ ..+.-..+|+++.+..+. |.+.-
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ 135 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIG 135 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHH
Confidence 4445677788889999999999999999999999875 4788899999999998 667788899998887664 45444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCccCHHHHHHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCS-----PDHITYNLLIQEFACAGLLKRMEGTYKSMLT-KRMHLRSSTMVAIL 286 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll 286 (510)
..|..-|-+ ++.+.+...|......=++ .-...|.-++.- -..+.+..+.+...+.+ .|..--.+.+.-+-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 556665655 8888888888887643222 123467666652 23467777777777764 34444566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 010459 287 DAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
.-|....++.+|.++++.+.+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc
Confidence 88888999999999998777654
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.87 E-value=75 Score=31.87 Aligned_cols=164 Identities=13% Similarity=-0.011 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459 278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS 357 (510)
Q Consensus 278 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 357 (510)
|.....+++..+.......-.+.+-.+|...| -+...+-.+...|..++ -+....++..+....-.+.+.-..+..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33344444444444444444444444444433 22333444444444442 1222222222222222222222222222
Q ss_pred hhhhcccccHHHHHHHHHHCCCCc--C---HHHHHHHHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHHHHHHhhhhc
Q 010459 358 HACLLSHRGIDSVVREMESAKVRW--N---VTTANIILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIGILYDARRIG 431 (510)
Q Consensus 358 ~~~~~~~~~a~~~~~~m~~~g~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~ 431 (510)
|-. ++.+.+...|.+...+=++. + ...|.-++.. -..+.+.-+.+..... +.|..--.+.+.-+..-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 222 44455556666655432210 1 1244444321 1345566666666665 344444555566666667777
Q ss_pred CccchHHHHHHHcCCc
Q 010459 432 FDGTGALEMWKRIGFL 447 (510)
Q Consensus 432 ~~~~~a~~~~~~~~~~ 447 (510)
.++++|+++++.+...
T Consensus 219 eN~~eai~Ilk~il~~ 234 (711)
T COG1747 219 ENWTEAIRILKHILEH 234 (711)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 7777777777766444
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.00 E-value=78 Score=31.62 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 178 (510)
|+-.|...+..|-+.+.+.+...+|..|...++..||.+++.+.=. |-.+-+++.|..+|..-.+... .++..|-
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~np-dsp~Lw~ 178 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFNP-DSPKLWK 178 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcCC-CChHHHH
Confidence 6678888898888888899999999999987888888888765433 3334459999999988877632 2344443
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.60 E-value=6.7 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
+++.|-..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555443
No 312
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=77.36 E-value=45 Score=32.32 Aligned_cols=263 Identities=11% Similarity=-0.045 Sum_probs=152.1
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HHhC--CC-CCCHHHHHHHHH
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINE----FNSQKIIGMLCEEGLMEEAVRAFQE--MEGF--AL-KPSLEIYNSIIH 182 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~-~~~~~~~~~li~ 182 (510)
-+++.|+.+....+|+...+ .|- -|. ..|+-|-++|.-.++++.|++.... ...+ |- .-..-+-..|-+
T Consensus 26 RLck~gdcraGv~ff~aA~q-vGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQ-VGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHH-hcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 47899999999999998876 332 233 3355556666666788888776431 1110 10 112233444555
Q ss_pred HHHhcCChHHHHHHH-HHH---HHCCC-CCCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHH-
Q 010459 183 GYSKIGKFNEALLFL-NEM---KEMNL-SPQSDTYDGLIQAYGKYKM--------------------YDEIDMCLKMMK- 236 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~-~~m---~~~g~-~p~~~t~~~li~~~~~~g~--------------------~~~a~~~~~~m~- 236 (510)
.+--.|.+++|+-.- +.+ ++.|- ......+-.|-+.|...|+ ++.|.+.|.+-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 566678888887542 222 33331 1133344456666654432 223444443321
Q ss_pred ---hCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 237 ---LDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSML----TKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 237 ---~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
+.|-. .--..|..|-..|--.|+++.|+...+.-. +-|-+ .....+..+-+++.-.|+++.|.+.|+.-..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 112345666666777789999987765432 22321 1235677788888889999999998887543
Q ss_pred ----cCC-CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc------CCchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459 308 ----SRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI------GRTELVWCLRLLSHACLLSHRGIDSVVREMES 376 (510)
Q Consensus 308 ----~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 376 (510)
.|- .......-+|-..|.-...++.|...+..-.... .....++.++..+|...|..++|+...+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 2233444567777777777777777655443221 12356677788888888888888766655443
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.83 E-value=40 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 187 IGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.++++++..+++.|.-... .|...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4455555555555543211 11222222222 33455555555555555543
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.31 E-value=17 Score=27.56 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+-++.+...++.|++....+.+.+|-|.+++..|.++|+.++
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555544
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.00 E-value=75 Score=30.38 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=98.2
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHH
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL----KPSLEIYNSIIHGYS 185 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~ 185 (510)
..+.-+.|+++...+..... ....++...+.++... +.++.+++....+.....-. .....+|........
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45566778888755554433 2233466666666655 77888888777776653210 011223333333333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-----cCCHHHHHHHH---HHHHh--CCCCCCHHHHHHHHHHHH
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-----YKMYDEIDMCL---KMMKL--DGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-----~g~~~~a~~~~---~~m~~--~g~~~~~~~~~~li~~~~ 255 (510)
+...+.+..++.+-..... .+......++..+.. ..+++.-..++ ..+.+ ........+|..+...+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3332322222222221110 001122222222211 11121111111 11111 112345667888899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 256 CAGLLKRMEGTYKSMLTKRMHL---RSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
+.|.++.|...+..+...+..+ +......-.+.....|+..+|...++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999888654211 233444455667778888999998888876
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.32 E-value=1.2e+02 Score=32.24 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (510)
..+...|+.+.-.|++++|-...-.|. .-+..-|---+.-++..++..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccccc
Confidence 345555555555555555555555555 334455555555544444433
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.72 E-value=5.5 Score=23.17 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 010459 243 DHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~ 264 (510)
|...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.61 E-value=9.4 Score=21.64 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=8.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m 200 (510)
.+-..|.+.|++++|.+.|++.
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3333444444444444444443
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.12 E-value=71 Score=28.75 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 256 (510)
|.---.+|-..+++++|...+.+..+ +.+-+..-| .....++.|--+.++|.+. +--+..|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44444566666777777766655432 111111111 1223345555555555532 1123345566677777
Q ss_pred cCCHHHHHHHHHHH
Q 010459 257 AGLLKRMEGTYKSM 270 (510)
Q Consensus 257 ~g~~~~A~~~~~~m 270 (510)
+|.++.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 77777766666554
No 320
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.42 E-value=11 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
.+|..+-..|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666777777778888888887777654
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.36 E-value=12 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
.|..+-..|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666777778888888887777654
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.56 E-value=64 Score=29.61 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEM--NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC- 256 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 256 (510)
=|.+++..+++.+++...-+-=+. .+.|. ....-|-.|+|.++...+.++-..-.+..-..+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356666666666666554333221 23322 3333444566777776666665554443223344456666665555
Q ss_pred ----cCCHHHHHHHH
Q 010459 257 ----AGLLKRMEGTY 267 (510)
Q Consensus 257 ----~g~~~~A~~~~ 267 (510)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36777776665
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.38 E-value=1.5e+02 Score=31.44 Aligned_cols=51 Identities=25% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKP---SLEIYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
+.+.+.+++|+..-+.-... .| -...+...|..+.-.|++++|-...-.|.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 45667777777766554432 33 34567777777777777777766655553
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.38 E-value=11 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=13.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
+..+|...|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 325
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=69.19 E-value=37 Score=32.29 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-----KPSLEI 176 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~ 176 (510)
.|-.+.+++-+.-++.+++++-.+-...+|..|. ....-++-.+..-.+.++.+++-|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555554443333333331 12233455556666777788877777654321 112356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHccCCHHHHHHHHHHHHh----CCCCC-
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKE----MNLSPQSDTYDG-----LIQAYGKYKMYDEIDMCLKMMKL----DGCSP- 242 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~-----li~~~~~~g~~~~a~~~~~~m~~----~g~~~- 242 (510)
|-.|-+.|.+..|.++|+-+.....+ .++.-=..-|.. +--++-+.|.+.+|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777777777777777665554422 222211112222 22234455666666555555432 22111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 243 DHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
-....-.+.+.|...|+.|.|+.-|++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122233455666777777777766654
No 326
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.04 E-value=1.2e+02 Score=29.83 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=20.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
...+|+-|...|+..+..+.++.+-
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcC
Confidence 3778888888999888888887654
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.99 E-value=36 Score=29.95 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=21.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 233 (510)
|+.+.+.+.+.+|+...++=++... .|..+-..+++.|+-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344444444444444444333321 133333444444444444444444333
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.53 E-value=3e+02 Score=33.65 Aligned_cols=150 Identities=7% Similarity=0.028 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQE----MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
.+..+--+++.+.+|...++. ..+. .....-|..+...|+..+++|....+...-.. +. ....-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHH
Confidence 455567788999999999998 3322 12234555666699999999988877764111 22 223345566
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH-HHHHHhcCChhHH
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI-LDAYMNFGMLDKM 298 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a 298 (510)
...|++..|...|+++.+.+ ++...+++-++......|.++.+.-..+..... ..+....++++ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999999875 344778887777777778888877766555543 12233333332 4444677777777
Q ss_pred HHHHH
Q 010459 299 EKFYK 303 (510)
Q Consensus 299 ~~~~~ 303 (510)
+..+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 76654
No 329
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.96 E-value=65 Score=29.59 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=54.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK--- 186 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 186 (510)
|.+++..+++.++....-+.-+ ..-+....+...-|-.|.|.|.+..+.++-..-.+.--..+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 6888888888888764433322 222233344555566788888888888887777654323334557766665544
Q ss_pred --cCChHHHHHHH
Q 010459 187 --IGKFNEALLFL 197 (510)
Q Consensus 187 --~g~~~~a~~~~ 197 (510)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 56777777665
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.78 E-value=54 Score=24.86 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-++-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555555554443311 12222222334455677777777766664 677777766544 355666666666666
Q ss_pred HHHCC
Q 010459 270 MLTKR 274 (510)
Q Consensus 270 m~~~g 274 (510)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.64 E-value=17 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 250 LIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345566666666666666665544
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.89 E-value=91 Score=27.16 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM---NLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 156 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
+.|++.|-.+...+.--++..-..|..-|. ..+.+++..++.+..+. +-.+|+..+.+|...|-+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344555555555443333333333333333 44555555555554432 2245555566666666666555554
No 333
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.46 E-value=8.6 Score=30.69 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=25.2
Q ss_pred hhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010459 360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAY 393 (510)
Q Consensus 360 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 393 (510)
..|...+|..+|.+|.+.|-+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667899999999999998874 78887654
No 334
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.85 E-value=29 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=14.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444444444455554444444444444333
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.81 E-value=13 Score=19.92 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAF 162 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~ 162 (510)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444555555555444
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.66 E-value=1.2e+02 Score=28.13 Aligned_cols=74 Identities=18% Similarity=-0.022 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh------cC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 159 VRAFQEMEGFALKPSLEIYNSIIHGYSK------IG-----KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 159 ~~~~~~m~~~g~~~~~~~~~~li~~~~~------~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
-+..++..+.-......+|.+.++++.. +| ...+|+++|.-+.++.-+ .++-+.+|.++....+..+
T Consensus 107 nraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kk 184 (361)
T COG3947 107 NRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKK 184 (361)
T ss_pred HHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhh
Confidence 3333444433223345566666666651 11 135777777777654322 3344556667777666666
Q ss_pred HHHHHHH
Q 010459 228 IDMCLKM 234 (510)
Q Consensus 228 a~~~~~~ 234 (510)
|...|..
T Consensus 185 a~s~lhT 191 (361)
T COG3947 185 ASSLLHT 191 (361)
T ss_pred HHHHHHH
Confidence 6665543
No 337
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.81 E-value=1.3e+02 Score=28.33 Aligned_cols=82 Identities=10% Similarity=-0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 010459 225 YDEIDMCLKMMKLDGC----SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 225 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 300 (510)
.+.|.+.|++....+. ..+...-..++...++.|..+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776421 234445556666677777755555555554433 256666777888888888888888
Q ss_pred HHHHHHhcC
Q 010459 301 FYKRLLNSR 309 (510)
Q Consensus 301 ~~~~m~~~~ 309 (510)
+++.+...+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888777654
No 338
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.34 E-value=57 Score=33.72 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcch
Q 010459 284 AILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~ 330 (510)
+|+.+|...|++-.+.++++..... |-..-...+|..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666665532 2222334455555555555554
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.25 E-value=23 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
+|..+-..|.+.|+.++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 340
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.98 E-value=31 Score=29.93 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=28.7
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010459 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167 (510)
Q Consensus 115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (510)
...+.+......+...+.....|+..+|..++..+...|+.++|.+...++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444344556666666666666666666666666655554
No 341
>PRK09687 putative lyase; Provisional
Probab=59.97 E-value=1.5e+02 Score=27.59 Aligned_cols=191 Identities=9% Similarity=-0.039 Sum_probs=103.9
Q ss_pred CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHH
Q 010459 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM----EEAVRAFQEMEGFALKPSLE 175 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~ 175 (510)
.+|.......+.++...|..+ +......+.. .+|...-...+.++++.|+. +++...+..+... .|+..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 445555666777777666433 3333332322 45666666777777777763 4567777666333 56666
Q ss_pred HHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 176 IYNSIIHGYSKIGK-----FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250 (510)
Q Consensus 176 ~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 250 (510)
+-...+.++...+. ...+.+.+...... ++..+--..+.++++.++. ++...+-.+.+ .+|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHH
Confidence 66666666665542 12334444333332 3555666677777777764 44455444443 3444444444
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 251 IQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 251 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
+.++.+.+ +.+.+...+..+... +|..+-...+.++.+.++. .+...+-...+.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~ 234 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK 234 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC
Confidence 55555543 234555555555532 3666667777777777774 344444444443
No 342
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.21 E-value=1.3e+02 Score=26.66 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 237 (510)
+.+||-|---+...|+++.|.+.|+...+.+..-+-...|--|..| --|+++.|.+=|-+.-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 3456666666666667777777776666644332222223223222 23566666655544443
No 343
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.50 E-value=43 Score=21.36 Aligned_cols=29 Identities=10% Similarity=0.238 Sum_probs=12.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
.|-.+++..++++|.+.|+..+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33334444444444444444444444333
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.37 E-value=26 Score=25.18 Aligned_cols=47 Identities=11% Similarity=-0.048 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHhhhhCCCCC-CH-HHHHHHHHhhhhcCccchHHHHH
Q 010459 395 KMKDFKHLRVLLSELPTRHVKP-DI-VTIGILYDARRIGFDGTGALEMW 441 (510)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~li~~~~~~~~~~~a~~~~ 441 (510)
+..+.++|+..|....+.-..| +. .++.+++.+++.-|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776543333 22 45777777777777777776653
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.36 E-value=12 Score=20.86 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
..+|.+.|++++|.+.|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34455556666666666665543
No 346
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.51 E-value=1.5e+02 Score=26.54 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=9.7
Q ss_pred HHHHHHhcCCCCcHHHHHHH
Q 010459 109 VIRFLKNSSRSRQIPQVFDM 128 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~ 128 (510)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555555443
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.95 E-value=92 Score=23.67 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 204 (510)
.+...|++++|..+.+.+. .||...|-+|-.+ +.|..+....-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3455667777766666654 6666666665432 4455555555555554444
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.94 E-value=1.9e+02 Score=29.83 Aligned_cols=149 Identities=13% Similarity=0.025 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC 231 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 231 (510)
.|+++.|..++..++ ...-+.+..-+-+.|-.++|+++- ..||. -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHHH
Confidence 466666666554443 234556666666777777666542 22222 22334467899998888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 311 (510)
..+.. +..-|..|-++....|++..|.+.|..-. -|.+|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~- 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK- 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence 76654 67789999999999999999999887655 345666677777776655555555555552
Q ss_pred CCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340 (510)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 340 (510)
.+.. .-+|...|+++++.+++...
T Consensus 724 ~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 NNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 3322 23456678888887775443
No 349
>PRK09687 putative lyase; Provisional
Probab=53.79 E-value=1.9e+02 Score=26.90 Aligned_cols=234 Identities=12% Similarity=-0.028 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHH
Q 010459 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF----NEALLFLNEMKEMNLSPQSDT 211 (510)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t 211 (510)
.+|..+.-..+..+.+.|..+....+ ..+.+ .+|...-...+.++.+.|+. +++...+..+... .||..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l-~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLA-IELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHH-HHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46666777777777777754333333 33332 45667777777777777763 4577777766433 355566
Q ss_pred HHHHHHHHHccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMY-----DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 212 ~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
-...+.+++..+.- ..+...+..... .++..+--..+.++.+.++ ++|...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 66666666655421 223333333332 3455555566677777765 4555555555543 3444555555
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccc
Q 010459 287 DAYMNFG-MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365 (510)
Q Consensus 287 ~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 365 (510)
.++.+.+ +...+...+..+.. .++..+-..-+.++.+.+..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~----------------------------------- 222 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK----------------------------------- 222 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-----------------------------------
Confidence 5555542 12344444444442 33445555555555554442
Q ss_pred cHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459 366 GIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428 (510)
Q Consensus 366 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 428 (510)
.+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 223 ~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 223 RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 2333333333331 2 123566667777764 566666666642 24665555555554
No 350
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.68 E-value=34 Score=23.23 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 010459 249 LLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m 270 (510)
.+|.+|...|++++|.+..+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555554444444
No 351
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.27 E-value=75 Score=26.09 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 293 (510)
.++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444555555555555444444444333444444433
No 352
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.74 E-value=1.1e+02 Score=23.68 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
.++|..+.+.+...+- ....+--+-+..+.+.|++++|+..= .....||...|-++-. .+.|..+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~----~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLP----QCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHH----TTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhc----ccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4555555555555442 12222222333444556666661111 1111456666654433 355555555555555
Q ss_pred HHHCC
Q 010459 270 MLTKR 274 (510)
Q Consensus 270 m~~~g 274 (510)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55443
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=52.64 E-value=44 Score=31.49 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKP-SLEIYNSIIHGYSKIGKFNEALLFLNE 199 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (510)
-|.+.|.+++|+..|..-... .| |.+++..-..+|.+..++..|..=-..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 456677777777777665443 44 677777777777777666655443333
No 354
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.00 E-value=2.1e+02 Score=26.94 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=75.3
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 179 SIIHGYSKIGK---FNEALLFLNEMKEMNL----SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 251 (510)
Q Consensus 179 ~li~~~~~~g~---~~~a~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 251 (510)
.++...+ |+ .+.|.+.|+.....+. ..+......++....+.|+.+....+++.... .++..-...++
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l 208 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLL 208 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHH
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHH
Confidence 3355445 54 5688889998877522 44666777788888889987777777777764 45777888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHhcCCh--hHHHHHHH
Q 010459 252 QEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGML--DKMEKFYK 303 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~ 303 (510)
.+.+...+.+...++++.....+ +++.. ...++.++...+.. +.+.+.+.
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 99999999999999999888754 55443 33444555433333 55555443
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.40 E-value=3e+02 Score=28.57 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH--HH-HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC-
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSII--HG-YSKIGKFNEALLFLNEMKE-------MNLSPQSDTYDGLIQAYGKYK- 223 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~li~~~~~~g- 223 (510)
...|...++...+.|.. .....-..+ .+ +....+++.|+..|+...+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56788999888876632 111122222 23 4467789999999999877 55 3346667777777743
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH--hcCChh
Q 010459 224 ----MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC-AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM--NFGMLD 296 (510)
Q Consensus 224 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~ 296 (510)
+.+.|..++....+.| .|+....-..+.-... ..+...|.++|...-+.|.. +..-+.+++-... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 5677999999988888 4666555444433333 34678999999998888843 2222222222222 234678
Q ss_pred HHHHHHHHHHhcC
Q 010459 297 KMEKFYKRLLNSR 309 (510)
Q Consensus 297 ~a~~~~~~m~~~~ 309 (510)
.|..++++..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888888887
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.14 E-value=1.1e+02 Score=24.37 Aligned_cols=42 Identities=7% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
+-++.+..-++-|++......+++|.+.+|+..|..+|+-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444445556666666666666666666666666665554
No 357
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.94 E-value=33 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=17.7
Q ss_pred CCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010459 207 PQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241 (510)
Q Consensus 207 p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 241 (510)
||..+| +.-|....+.||+++|++++++.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 444433 45555555555555555555555555543
No 358
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.97 E-value=33 Score=31.78 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 207 (510)
||..|....+.||+++|+.++++.++.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3455555566666666666666665555543
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.44 E-value=1.9e+02 Score=25.69 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAE 322 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~ 322 (510)
.+.-|+.+.+.+.+.+|+...++=.+... .|..+-..+++.+|-.|++++|..-++-.-+. ...+...+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455666677777777777666555432 24555666677777777777776666554432 22233444544444
No 360
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.06 E-value=1.8e+02 Score=25.22 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTP--------------LKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
.+++-.|-+.-++.+++.+++.|.+..+. +.-...|.-...+.++|.++.|..+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~v 203 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWV 203 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHH
Confidence 35666777788888888888887654332 2223445555555555555555544
No 361
>PHA03100 ankyrin repeat protein; Provisional
Probab=47.30 E-value=1.3e+02 Score=30.28 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH-----HHHcCCHHHHHHHHHHHHHCCCccCH---HHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY--NLLIQE-----FACAGLLKRMEGTYKSMLTKRMHLRS---STM 282 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~ 282 (510)
.+.+...++.|+.+-+..+ .+.|..|+.... .+.+.. .+..|..+ +.+.+.+.|..++. ...
T Consensus 36 ~t~L~~A~~~~~~~ivk~L----l~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~ 107 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKIL----LDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGI 107 (480)
T ss_pred chhhhhhhccCCHHHHHHH----HHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCC
Confidence 3455566677776554444 456666654322 234444 45555543 34444556655432 234
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhhc
Q 010459 283 VAILDAYM-NFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNY 328 (510)
Q Consensus 283 ~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~ 328 (510)
+.+..|.. ..|+.+ +++.+.+.|..++... ....+...++.|
T Consensus 108 tpL~~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 108 TPLLYAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESN 152 (480)
T ss_pred chhhHHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence 44444442 555544 4455556666554321 123444555555
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.15 E-value=67 Score=23.12 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHCCCcc-C-HHHHHHHHHHHHhcCChhHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMHL-R-SSTMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~~a~ 299 (510)
..+.++|+..|....+.-..| + -.++..++.+|+..|++.+.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444322111 1 123444444444444444433
No 363
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.00 E-value=66 Score=21.84 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
.++...++++.+... +-|-.--..+|.++...|++++|.+..+.+.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666533 22444556788999999999999998888764
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.71 E-value=1.1e+02 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
.|+..+|..++..+...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555544444
No 365
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.84 E-value=1.7e+02 Score=29.61 Aligned_cols=183 Identities=10% Similarity=0.113 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGM-----LCEEGLMEEAVRAFQEMEGFALKPSL---EIY 177 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 177 (510)
+.+...++.|+.+-...+++ .|..|+... ..+.+.. .+..|+.+-+ +.+.+.|..++. ..+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~-----~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~ 107 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLD-----NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGI 107 (480)
T ss_pred hhhhhhhccCCHHHHHHHHH-----cCCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCC
Confidence 34445556677655554444 677766533 2234455 5555555444 444455555433 234
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 010459 178 NSIIHGYS-KIGKFNEALLFLNEMKEMNLSPQSDTY--DGLIQAYGKYK--MYDEIDMCLKMMKLDGCSPDHITY--NLL 250 (510)
Q Consensus 178 ~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~--~~l 250 (510)
+.|..+.. ..|+.+ +++.+.+.|..++.... .+.+..+++.| +.+ +.+.+.+.|..++.... .+-
T Consensus 108 tpL~~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 108 TPLLYAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred chhhHHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCH
Confidence 44444432 555544 44455566665543221 34555566666 444 34444555655443221 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHH--------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSST--------MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
+...+..|+.+ +.+.+.+.|..|+... +.+.+...+..|. ...++.+.+.+.|..++
T Consensus 180 L~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 180 LHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPIN 244 (480)
T ss_pred HHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCC
Confidence 45556666554 4444455666555321 1333444445554 12345555566666554
No 366
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.79 E-value=2.6e+02 Score=26.21 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=32.8
Q ss_pred hccCCCChhhHHHHHH-HHHhcC-CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010459 96 QHDGDWTKDHFWAVIR-FLKNSS-RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAF 162 (510)
Q Consensus 96 ~~~~~~~~~~~~~ll~-~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 162 (510)
-..+.|++..++++.+ .+.+.| ....|.++|..+.. ....+.+|..+-+.+.-+.-+++|
T Consensus 158 l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~-------Ek~i~~lis~Lrkg~md~rLmeff 219 (412)
T KOG2297|consen 158 LSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV-------EKDINDLISSLRKGKMDDRLMEFF 219 (412)
T ss_pred HhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh-------hccHHHHHHHHHhcChHhHHHHhc
Confidence 3445666666776664 344444 34567778876654 223456666665554444444433
No 367
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.57 E-value=2e+02 Score=26.89 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
++..+.+.+++....+.+..+. ....-...|......|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555555554 344445555566666666666666665543
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.92 E-value=1.6e+02 Score=30.73 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGLME------EAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
+++.+|...|++..+.++++.+... .|-+.=...+|..|.-+.+.|.++ .|.+.+++.. +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999888888877642 223334567888888888888764 2333333333 45577778777
Q ss_pred HHHHHh
Q 010459 181 IHGYSK 186 (510)
Q Consensus 181 i~~~~~ 186 (510)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 369
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.32 E-value=2.5e+02 Score=26.38 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=55.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 010459 194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----------AGLLKRM 263 (510)
Q Consensus 194 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 263 (510)
.++++.|.+.++.|.-.++.=+.-.+...=.+.++..+++.+.. |..-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888888888887777777777778888888888773 33335555555443 4777777
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHH
Q 010459 264 EGTYKSMLTKRMHLRSSTMVAILDAY 289 (510)
Q Consensus 264 ~~~~~~m~~~g~~p~~~t~~~ll~~~ 289 (510)
.++++.-- ..|..+...+.+.+
T Consensus 338 mkLLQ~yp----~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 338 MKLLQNYP----TTDISKMLAVADSL 359 (370)
T ss_pred HHHHhcCC----CCCHHHHHHHHHHH
Confidence 77664432 33444444444433
No 370
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.99 E-value=54 Score=25.33 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=22.2
Q ss_pred cChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 454 NTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
.-|..++..|...|..++|.+++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4577788888888888888888877766
No 371
>PHA02989 ankyrin repeat protein; Provisional
Probab=42.34 E-value=3.9e+02 Score=27.21 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCcCHHH---HHHHHHHHHcCCChhHHHHH
Q 010459 369 SVVREMESAKVRWNVTT---ANIILLAYLKMKDFKHLRVL 405 (510)
Q Consensus 369 ~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~ 405 (510)
++++.+.+.|..|+... .+.| ...++.|..+-+..+
T Consensus 270 ~~v~~LL~~Gadin~~d~~G~TpL-~~A~~~~~~~iv~~L 308 (494)
T PHA02989 270 EAFNYLLKLGDDIYNVSKDGDTVL-TYAIKHGNIDMLNRI 308 (494)
T ss_pred HHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHH
Confidence 56666777777665542 2233 333445555444333
No 372
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.19 E-value=3.4e+02 Score=27.75 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY---DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
-..++.-|.+.+++++|..++..|.=. .. ....| +.+.+...+..--++.+..++.+...=..|....-.....-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~-~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~e 488 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWN-TM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLE 488 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcc-cc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 345666777778888888877777221 11 12233 44555555555444555555554432222332222333333
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
|.. -=.+-|.++|..|.+.+ -|..........|+.|--.++|......|
T Consensus 489 y~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 489 YRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 433 12345666777666542 23333333345566666666665555444
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.81 E-value=2.5e+02 Score=24.93 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=100.4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHH
Q 010459 135 SRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTY 212 (510)
Q Consensus 135 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~ 212 (510)
+.|+ +.+||-|--.+...|+++.|.+.|+...+.+..-+-...|.=|..| -.|++.-|.+=|...-+.+ -.|=...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4454 3578888888999999999999999999765443434444434333 3678888887666654443 33333344
Q ss_pred HHHHHHHHccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc------cCHHHHHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMC-LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH------LRSSTMVAI 285 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------p~~~t~~~l 285 (510)
--|+. ..-+..+|..- .++.. ..|..-|...|-.|.-..-.++ .+++..+...-. .=+.||--+
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 33332 23355666544 34444 4566777776665544333222 234443321110 113577778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 010459 286 LDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
-+-+...|+.++|..+|+-.+...
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHHh
Confidence 888899999999999998776543
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.54 E-value=2.3e+02 Score=24.37 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=20.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 258 (510)
+-.|.+.|.+++|.+++++..+ .|+......-+....+.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 3455566666666666666554 233333344444444443
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.83 E-value=2.3e+02 Score=24.25 Aligned_cols=41 Identities=5% Similarity=0.077 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
++|.+.|+..... .|+...|..-+..+. +|-++|.++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 3344444443332 455556665555552 2444555554444
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.54 E-value=2.1e+02 Score=24.65 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH--H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 225 YDEIDMCLKMMKLDGCSPDH--I-----TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 225 ~~~a~~~~~~m~~~g~~~~~--~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
++.|+.+++.+.+.--.|.. . .--..+..|.++|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 45677777776654322210 1 1123345688899999999999888763 344444444433333
No 377
>PRK12356 glutaminase; Reviewed
Probab=40.54 E-value=2.4e+02 Score=26.69 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhhcchhHHHHHH
Q 010459 286 LDAYMNFGMLDKMEKFYKRLLNSRTPL-------KEDLVRKLAEVYIKNYMFSRLDDLG 337 (510)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~ 337 (510)
.+.|+-....+..-.+..-+-..|+.| +..+...+......||.++.+-+..
T Consensus 196 f~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa 254 (319)
T PRK12356 196 TRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWA 254 (319)
T ss_pred HHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHH
Confidence 334444444444444444444455544 3444555666666777777776663
No 378
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.44 E-value=1.5e+02 Score=25.00 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=18.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
.........-.|.+|++.+.+.+..++..|.---++.+.+.|.+
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333333444455555554444444444333334444444443
No 379
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.06 E-value=3e+02 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010459 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEG 167 (510)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (510)
.+....+..|+..+......++... .|++..|+.+++++..
T Consensus 186 ~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 186 HLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3333333355555555555555443 4666666666665543
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.78 E-value=2.6e+02 Score=24.39 Aligned_cols=87 Identities=11% Similarity=-0.048 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI-----IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
..+..+|++++|..-++..... |.-..+..+ -+...+.|.+++|+.+++...+.+.. ......--+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3444555555555555544421 122222222 23344455555555555544333221 1112223344445
Q ss_pred cCCHHHHHHHHHHHHhC
Q 010459 222 YKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~ 238 (510)
.|+-++|..-|++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555443
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.65 E-value=58 Score=16.93 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=8.6
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNE 199 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~ 199 (510)
.+...+...|+++.|...|+.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333334444444444444433
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.31 E-value=91 Score=32.49 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEME 166 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 166 (510)
+...-.-++..|.+.|-.+.|.++.+.+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555566666666666666655544
No 383
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=38.81 E-value=43 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=35.6
Q ss_pred HHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCCC
Q 010459 459 VLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508 (510)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 508 (510)
+-......|+.+.|.++++.+. ..|+ -|..+++|+...|..++|.
T Consensus 38 I~a~~~~~G~~~aa~~Ll~~L~---r~~~--Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 38 IQAAENNSGNIKAAWTLLDTLV---RRDN--WLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHhcCChHHHHHHHHHHHh---ccCC--hHHHHHHHHHHcCCHHHHH
Confidence 3344556799999999999988 3566 6779999999999988875
No 384
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.63 E-value=5.6e+02 Score=27.98 Aligned_cols=172 Identities=11% Similarity=0.074 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 185 (510)
.+=+.|...|+++.|+++- +..|+. .++-.-.+.|.+.+++..|-+++.++. .++-.+.--+.
T Consensus 363 ~vWk~yLd~g~y~kAL~~a-------r~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEVaLKFl 427 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIA-------RTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEVALKFL 427 (911)
T ss_pred HHHHHHHhcchHHHHHHhc-------cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHHHHHHH
Confidence 3445566777777776653 233443 344455566777788888888888774 23334444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------ccCCHH----HHHHHHH--------HHHh-CCCCCCHHH
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG------KYKMYD----EIDMCLK--------MMKL-DGCSPDHIT 246 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~------~~g~~~----~a~~~~~--------~m~~-~g~~~~~~~ 246 (510)
...+.+ ++..|-.=+-..+.|...+-..++..+. +.++++ ++..-++ ++.. .....+...
T Consensus 428 ~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~n 506 (911)
T KOG2034|consen 428 EINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELN 506 (911)
T ss_pred hcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 555544 5555443333335555444443333222 122222 1111111 1110 001122233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
..+....+...|+.++...+=.-|. -|..++.-+.+.+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455566655555444443 244566666667777777766643
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.04 E-value=3.2e+02 Score=25.08 Aligned_cols=206 Identities=15% Similarity=0.181 Sum_probs=124.2
Q ss_pred CCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHC---CC-
Q 010459 204 NLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITY---NLLIQEFACAGLLKRMEGTYKSMLTK---RM- 275 (510)
Q Consensus 204 g~~p~~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 275 (510)
+-.||+..=|..-+.- .+..++++|+.-|++..+..-+.-..-| .-+|..+.+.|++++..+.|.+|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4566665444322221 2345788999999998875333344333 45788899999999999999998631 11
Q ss_pred -ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc--
Q 010459 276 -HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS-RTPLKE----DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT-- 347 (510)
Q Consensus 276 -~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-- 347 (510)
.-+..+.+++++.-+...+.+--.++++.-.+. .-.-+. .|-..|-..|...+.+....++++++......+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 124567788888777777777666666543321 001111 223567778888888888888888877443221
Q ss_pred ----------hHHHHHHHHHhhhhcccccHHHHHHHHHHCC-CCcCHHHHHHHHHHH-----HcCCChhHHHH-HHHhhh
Q 010459 348 ----------ELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNVTTANIILLAY-----LKMKDFKHLRV-LLSELP 410 (510)
Q Consensus 348 ----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~-----~~~g~~~~A~~-~~~~m~ 410 (510)
...|..-|..|....+-.....++++..... .-|.+.... +|.-| .+.|++++|.. .|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 4556666777777776666667777655432 233443332 34433 46677877643 334333
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.21 E-value=4.5e+02 Score=26.45 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=76.5
Q ss_pred HhcCCCCcH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459 114 KNSSRSRQI-PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192 (510)
Q Consensus 114 ~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (510)
...|+...| .+++..++. ..-.|+....-+.| +...|+++.+.+.+....+. +.....+-..+++..-+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 345666555 456665554 44456655544443 45678888888877655432 23355677788888888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
|+.+-.-|+...++ |......-....-..|-++++...++++....
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 98888888877665 33333333333334567788888888776544
No 387
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.06 E-value=69 Score=22.08 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMN 204 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 204 (510)
.++.++..+++..-.++++..+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333333333333333333
No 388
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.99 E-value=2.8e+02 Score=24.07 Aligned_cols=55 Identities=7% Similarity=0.086 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--------------CccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKR--------------MHLRSSTMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g--------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
+++-.|-+.-+|.+..++++.|.+.. ..+--...|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34455666666666666666654321 23444556666677777777777777766
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.80 E-value=1.9e+02 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKL----DG-CSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+--+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3466667777777777777777642 22 2244455556667777777777776665544
No 390
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.39 E-value=2.7e+02 Score=26.16 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhh----------cCccchH
Q 010459 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI----------GFDGTGA 437 (510)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----------~~~~~~a 437 (510)
.++++.|.+.++.|.-.+|.-+.-.+.+.=...+.+.+|+.+.. |..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 57788888888888887777766667777788888888888875 33336666665543 3455555
Q ss_pred HHHHHH
Q 010459 438 LEMWKR 443 (510)
Q Consensus 438 ~~~~~~ 443 (510)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555443
No 391
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.88 E-value=97 Score=21.35 Aligned_cols=53 Identities=8% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 188 (510)
+.|....++-++..+++-.-+++++..+++..+.|. -+..+|---++.+++..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 346777889999999999999999999999999885 47777877777776543
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.72 E-value=3.9e+02 Score=25.37 Aligned_cols=46 Identities=9% Similarity=-0.071 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
.-+.++++..+.. +.+...+-.+|..+.+..+.++..+-|+++...
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344555544442 244555555666666666666666666666554
No 393
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.58 E-value=2.9e+02 Score=23.74 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC----C-------hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhh
Q 010459 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMK----D-------FKHLRVLLSELPTRHVKPDIVTIGILYDARR 429 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 429 (510)
++|..-|++.....+. ...++..+-.+|...+ + +++|...|++..+ ..|+...|..-+....
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 3444445555443222 2344444544444322 2 4445555555554 4688888888887663
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.45 E-value=1.6e+02 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFA 169 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g 169 (510)
++|+.+.+|...++|+++.+-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35666777777777888777777776
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.42 E-value=3.6e+02 Score=24.81 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=109.3
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHh---CCC
Q 010459 168 FALKPSLEIYNSIIHGY-SKIGKFNEALLFLNEMKEMNLSPQSDT---YDGLIQAYGKYKMYDEIDMCLKMMKL---DGC 240 (510)
Q Consensus 168 ~g~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~---~g~ 240 (510)
.+-+||+..=|.--..- .+..++++|+.-|++.++..-.-...- ...+|..+.+.+++++....+.+|.. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567765544332211 234479999999999887543333333 35678889999999999999998863 111
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HC-CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----
Q 010459 241 --SPDHITYNLLIQEFACAGLLKRMEGTYKSML----TK-RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR---- 309 (510)
Q Consensus 241 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---- 309 (510)
.-+..+.|++++--....+.+.-.++|+.-. .. +-+.--.|-+-|-..|...+.+.+...+++++.++-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2356677888887666666666666665432 21 111122344567777888888888888888887531
Q ss_pred CCCC-------HHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 310 TPLK-------EDLVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 310 ~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
-..| ..+|..=|.+|....+-.....++.+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1222 2456666777777666666666655544
No 396
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.37 E-value=1.2e+02 Score=23.25 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCC
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG--MLDKMEKFYKRLLNSRTPL 312 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~ 312 (510)
..+|..|...|+.++|..-+.++..... .......++..+...+ .-+..-.++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 3455566666777777777766532211 1122333333333332 2233445555555555443
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.34 E-value=2.5e+02 Score=25.48 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CC-CccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLT----KR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
-|-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345567777777777777776631 22 223344555556666666666665554433
No 398
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.67 E-value=6e+02 Score=27.20 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (510)
-|+-++|..+.++|.... .|- ..-.-++..+|+-.|+....++++....... .-|+.-...+.-++.-+.+.+.+.
T Consensus 514 ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~~ 591 (929)
T KOG2062|consen 514 YGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQLP 591 (929)
T ss_pred hhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhch
Confidence 344555555555555332 111 1112234445555555555555444333211 222222222222233334444444
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhccc-ccHHHHHHHHHH
Q 010459 335 DLGDDLASRIGRTELVWCLRLLSHACLLSH-RGIDSVVREMES 376 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 376 (510)
....-+.....+.+..-.++..+.++.|-. .+|..+++.|..
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 444444444444444444454455555443 345566665554
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.57 E-value=3.9e+02 Score=24.93 Aligned_cols=70 Identities=10% Similarity=-0.079 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHH----HCCCCcCHHHHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCC
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREME----SAKVRWNVTTANIILL-AYLKMKDFKHLRVLLSELPTRHVKPD 417 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (510)
...|..+..-|++.++.+.+.+...+.. ..|.+.|+...-+-+. .|....-+++-++..+.|.++|-..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 4445555556666666666555444433 3344444332222111 23333345666666677776665443
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.36 E-value=4.1e+02 Score=25.22 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 241 SPDHITYNLLIQEFACAG------------LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 241 ~~~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
+-|+.+|-.++.---..- -.+.-+.++++..+.+. -+.......|..+.+..+.++..+-++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777776665322221 13455667777666632 35666777788888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 010459 309 RTPLKEDLVRKLAEVYIK 326 (510)
Q Consensus 309 ~~~~~~~~~~~li~~~~~ 326 (510)
. +-+...+...++....
T Consensus 95 ~-~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQS 111 (321)
T ss_pred C-CCChHHHHHHHHHHHH
Confidence 3 2356666666665443
No 401
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.31 E-value=1.9e+02 Score=22.10 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=6.6
Q ss_pred HHHhcCChHHHHHHHHH
Q 010459 183 GYSKIGKFNEALLFLNE 199 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~ 199 (510)
.|...|+.++|...+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33334444444444433
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.76 E-value=2e+02 Score=21.33 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=9.7
Q ss_pred HHHhcCChHHHHHHHHHH
Q 010459 183 GYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m 200 (510)
.....|++++|.+.+++.
T Consensus 50 ~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 344455555555555554
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=33.18 E-value=6.1e+02 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=25.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
++|-.|.|+|++++|.++..+.... .......+...+..|+.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4666777777777777777444322 234445566666666664
No 404
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=4.4e+02 Score=25.08 Aligned_cols=92 Identities=12% Similarity=-0.087 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHH----HCCCCcCHHHHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCCH----HHH
Q 010459 351 WCLRLLSHACLLSHRGIDSVVREME----SAKVRWNVTTANIILL-AYLKMKDFKHLRVLLSELPTRHVKPDI----VTI 421 (510)
Q Consensus 351 ~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 421 (510)
|-....-|++.|+.+.|++.+.+.. ..|.+.|+..+.+=+. -|....-+.+-++-.+.+.+.|-..+. .+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 3444445566666666665554433 3455556555544333 233334444555555555555544443 233
Q ss_pred HHHHHhhhhcCccchHHHHHHHc
Q 010459 422 GILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 422 ~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
..+-... -.++.+|-.+|-..
T Consensus 187 ~Gly~ms--vR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 187 QGLYCMS--VRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHH--HHhHHHHHHHHHHH
Confidence 3333222 22566666655443
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.73 E-value=2.1e+02 Score=21.23 Aligned_cols=54 Identities=6% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHcCCHHHHHHHHHHHH----HCCCccC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 254 FACAGLLKRMEGTYKSML----TKRMHLR----SSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~----~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
..+.|++.+|.+-+.+.. ..+..+. ......+.......|+.++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777755544433 2222221 12233344555667888888888877664
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.62 E-value=2e+02 Score=21.18 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
.|+.+.|.+++..++ .| |+ .|...++++.+.|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchh
Confidence 344444555555444 22 11 2444444444444433
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.57 E-value=2.1e+02 Score=21.17 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
.|+.+.|.+++..+. .|. ..|...++++...|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchh
Confidence 345555555555554 321 13444455554444433
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.37 E-value=2.3e+02 Score=23.18 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
++.+.+.+.|++++. --..+++.+...++.-.|.++|+.+.+.+...+..|.-.-++.+...|.+
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 445566778887654 34567888888888899999999999988777666655556666666644
No 409
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.23 E-value=2.6e+02 Score=22.20 Aligned_cols=78 Identities=4% Similarity=-0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH----
Q 010459 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL---- 390 (510)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---- 390 (510)
..+..|-.++...|+++++..- .+.|+..|++=-+.... .-..|...+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~s---------------------------A~~aL~YFNRRGEL~qd-eGklWIaaVfsra 107 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQS---------------------------ADRALRYFNRRGELHQD-EGKLWIAAVFSRA 107 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH---------------------------HHHHHHHHHHH--TTST-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHH---------------------------HHHHHHHHhhccccccc-cchhHHHHHHHHH
Confidence 3445555666666666665544 14455555543322111 334554443
Q ss_pred HHHHcCCChhHHHHHHHh---hh--hCCCCCCHHH
Q 010459 391 LAYLKMKDFKHLRVLLSE---LP--TRHVKPDIVT 420 (510)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~---m~--~~g~~p~~~t 420 (510)
.++-..|+.++|+..|+. |+ ++|-.|+...
T Consensus 108 ~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~~ke~ 142 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRMAGEMIAERKGEMPGKEA 142 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHH--S--TTHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence 256678999999888864 44 3555565443
No 410
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.13 E-value=1.1e+02 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
+......+..-.|.++++.+.+.+..++..|....|+.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333344444555555555555444444444444444444443
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.04 E-value=5e+02 Score=25.44 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLE--IYNSIIHGYSK--IGKFNEALLFLNEMKEM 203 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 203 (510)
-+-+.+++..|.++|+++... ++++.. .|..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344789999999999999986 555444 55666666654 45678899999887654
No 412
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.94 E-value=4.3e+02 Score=24.68 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=35.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
-.++..+.+.+++......+..+. ....-...|......|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666666666666666665 344445667777788888888888777654
No 413
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.91 E-value=3.6e+02 Score=23.72 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=47.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSP----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 259 (510)
+.++|++++|.+-|.+.++.-... -.+.|..-..+..+.+.++.|..--....+.+. ......---..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 345677777777777666542111 122333334455666777776666665554431 111111112235666666
Q ss_pred HHHHHHHHHHHHHC
Q 010459 260 LKRMEGTYKSMLTK 273 (510)
Q Consensus 260 ~~~A~~~~~~m~~~ 273 (510)
+++|++=|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776655
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.62 E-value=5.5e+02 Score=25.84 Aligned_cols=127 Identities=11% Similarity=0.044 Sum_probs=65.4
Q ss_pred ccCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHH
Q 010459 221 KYKMYDEI-DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 221 ~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 299 (510)
..|++-.| .++|..+....-.|+.+...+.| +...|+++.+...+...... +.....+...+++..-+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555443 34455554443345555444443 34567777777666554422 2224456666677777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHH
Q 010459 300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW 351 (510)
Q Consensus 300 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
.+-.-|....++. +.+...-...--..|.++++.-.++++....++....|
T Consensus 378 s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 7776666544332 22222111222234556666666666655544443333
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.46 E-value=92 Score=16.83 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 153 GLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
|+++.|..+|+++...- +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34555556666555432 12344444433
No 416
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.36 E-value=4.9e+02 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010459 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241 (510)
Q Consensus 209 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 241 (510)
......++++... |+...+..+++++.+.|..
T Consensus 251 ~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 251 RSHVFRLIDALAQ-GDGRTVVETADELRLNGLS 282 (618)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Confidence 3334444444443 5566666666666655543
No 417
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=31.33 E-value=1.7e+02 Score=27.75 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
-+-|.+.|.+++|+..|..-.. +.| |.+++..-..+|.+...+..|+.=-....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3567788888888888876544 445 77788777788888877776665554444
No 418
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.11 E-value=3.9e+02 Score=23.90 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 144 KIIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 144 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
.++.++.- .+++++|.+.+-.- .+.|+-. .-++.++...|+.+.|+.+++.+....- +......++.. ..
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La 152 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HH
Confidence 34444433 35666666655211 1122222 2366677777777777777776533221 22223333333 45
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
++.+.+|...-+...+. -....|..++..+...
T Consensus 153 ~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred cCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHH
Confidence 56777777666655531 1133555555555533
No 419
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.05 E-value=4.7e+02 Score=24.85 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 234 (510)
+.+|.++|.+.. +.-..+|+ +..+...--...+.+.+++...-...-.-|.-+.-|.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~AL----ka~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQAL----KAGETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHH----HHHHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHH
Q 010459 235 MKLDGCSPDHITYNL---LIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAIL 286 (510)
Q Consensus 235 m~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 286 (510)
+.+. .|-...+|. +|.++....-+.+...++.+..+...+-+ ...|++.+
T Consensus 301 L~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred Hhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 420
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.84 E-value=2e+02 Score=22.35 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
+|+..-+|...++|+.+.+-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444445555555555555555544
No 421
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.28 E-value=5.3e+02 Score=25.22 Aligned_cols=184 Identities=7% Similarity=-0.034 Sum_probs=94.2
Q ss_pred cCCCCcHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 010459 116 SSRSRQIPQVFDMWKNIEK----SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI---- 187 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 187 (510)
.++.+.|.+-+-...+... ...+..++..+++.|...++|+.--+....+.+.. .....+-..|+.-+..-
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkr-gqlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKR-GQLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCC
Confidence 4555666554433333222 33444566777888888888877655555444321 11334444555443321
Q ss_pred CChHHHHHHHHHHH--HCC-C-CCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----------
Q 010459 188 GKFNEALLFLNEMK--EMN-L-SPQSDTY--DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL----------- 250 (510)
Q Consensus 188 g~~~~a~~~~~~m~--~~g-~-~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----------- 250 (510)
.+.+--+.+.+.++ -.| + .-...++ ..|...+-.+|++++|..++.+.+ +.||.+|
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILE 176 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHH
Confidence 12233333333332 112 1 0011111 445666777899999988887764 2344443
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHCCC-ccCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 251 -IQEFACAGLLKRMEGTYKSMLTKRM-HLRS-----STMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 251 -i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
++-|...+|+-.|--+-+.+...-+ .||. .-|..+++...+.+.+=.+-+.|+.+..
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 4556666777777655555543322 2332 2355666665555555555555555544
No 422
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.22 E-value=2.6e+02 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 329 (510)
.-.|.++++.+.+.+...+..|.---++.+...|.
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555555444443444443334444444444
No 423
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.08 E-value=8.7e+02 Score=27.68 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=58.8
Q ss_pred HHccCCHHHHHHHHHHHHhC-----------------------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLD-----------------------GCSPD-----HITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~-----------------------g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
|..+|...+|.+.|.+.... |-.|. ..=|-.++..+-+.+..|.+.++-...
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55677888888888776421 11111 222455666666667666666665544
Q ss_pred HHC-CC-ccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhhcchhHH
Q 010459 271 LTK-RM-HLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE----DLVRKLAEVYIKNYMFSRL 333 (510)
Q Consensus 271 ~~~-g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a 333 (510)
++. +. .|. ..+++.+.+-....|.+-+|...+-. .||. .....|+-.++.||.++..
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L 1073 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEAL 1073 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHH
Confidence 432 11 111 24566666666667766666554432 1332 2345566666666665433
No 424
>PHA02798 ankyrin-like protein; Provisional
Probab=30.05 E-value=6e+02 Score=25.78 Aligned_cols=243 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHH
Q 010459 159 VRAFQEMEGFALKPSL---EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY--DGLIQAYGKYKMYDEIDMCLK 233 (510)
Q Consensus 159 ~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~ 233 (510)
.++.+.+.+.|..+|. .-.+.|..+...........++.+.+.+.|..+|...- .+-+...+..+.. .-.++.+
T Consensus 51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~ 129 (489)
T PHA02798 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHH
Q ss_pred HHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH---HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 234 MMKLDGCSPDHITY--NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS---TMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 234 ~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
.+.+.|..++...- .+.+..+++.|. ..-.++.+.+.+.|..++.. ...+.+..+.+.+--..-.++++.+.+.
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~ 208 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN 208 (489)
T ss_pred HHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Q ss_pred CCCCCH-------HHHHHHHHHH-HhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459 309 RTPLKE-------DLVRKLAEVY-IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380 (510)
Q Consensus 309 ~~~~~~-------~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 380 (510)
|..++. .....+.... .....-.....++..-.....++..-++.+..+..... .++++.+.+.|..
T Consensus 209 Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~-----~~~v~~LL~~GAd 283 (489)
T PHA02798 209 GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN-----RKIFEYLLQLGGD 283 (489)
T ss_pred CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc-----HHHHHHHHHcCCc
Q ss_pred cCHHHHH--HHHHHHHcCCChhHHHHHHHh
Q 010459 381 WNVTTAN--IILLAYLKMKDFKHLRVLLSE 408 (510)
Q Consensus 381 p~~~~~~--~li~~~~~~g~~~~A~~~~~~ 408 (510)
||...-. +-+...++.|..+-...+++.
T Consensus 284 in~~d~~G~TpL~~A~~~~~~~iv~~lL~~ 313 (489)
T PHA02798 284 INIITELGNTCLFTAFENESKFIFNSILNK 313 (489)
T ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHcc
No 425
>PHA02878 ankyrin repeat protein; Provisional
Probab=29.94 E-value=5.9e+02 Score=25.68 Aligned_cols=232 Identities=9% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 159 VRAFQEMEGFALKPSLEIYN--SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 159 ~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
.++.+.+.+.|..+|...-. +-+...+..|+.+.+..+++....... ..-...+...+..++.+-+..++..-.
T Consensus 50 ~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~ 125 (477)
T PHA02878 50 LDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRY 125 (477)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcc
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCccCHHHHH---HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 010459 237 LDGCSPDHITYNLLIQEFACAGLLKRMEG--TYKSMLTKRMHLRSSTMV---AILDAYMNFGMLDKMEKFYKRLLNSRTP 311 (510)
Q Consensus 237 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 311 (510)
......+. ............+ +.+.+.+.|..++...-. +.+...+..|+ .++.+.+.+.|..
T Consensus 126 ~~~~~~~~--------~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~----~~iv~~Ll~~gad 193 (477)
T PHA02878 126 KNIQTIDL--------VYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKD----QRLTELLLSYGAN 193 (477)
T ss_pred cCcccCcH--------HHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCC----HHHHHHHHHCCCC
Q ss_pred CCHHHH--HHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHH----
Q 010459 312 LKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT---- 385 (510)
Q Consensus 312 ~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---- 385 (510)
++.... .+.+...++.|..+-+..++..-......+..-++.+..+....+ -.++.+.+.+.|..++...
T Consensus 194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~----~~~iv~~Ll~~gadvn~~~~~~g 269 (477)
T PHA02878 194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK----DYDILKLLLEHGVDVNAKSYILG 269 (477)
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC----CHHHHHHHHHcCCCCCccCCCCC
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC
Q 010459 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPD 417 (510)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (510)
++.|..| .+.. ++++.+.+.|..|+
T Consensus 270 ~TpLh~A---~~~~----~~v~~Ll~~gadin 294 (477)
T PHA02878 270 LTALHSS---IKSE----RKLKLLLEYGADIN 294 (477)
T ss_pred CCHHHHH---ccCH----HHHHHHHHCCCCCC
No 426
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.94 E-value=3.4e+02 Score=23.69 Aligned_cols=59 Identities=5% Similarity=-0.027 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF-NSQKIIGMLCEEGLMEEAVRAFQEM 165 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 165 (510)
..+.++..|...|+++.|.++|..+.+.+ +.|.. .|+.=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~--~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP--EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC--CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 56789999999999999999999998643 33332 4665555555555544444444444
No 427
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.82 E-value=1.8e+02 Score=19.73 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=13.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 182 (510)
..|++=+|.++++++=.....+....|..||.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 34555555555555543222223344444444
No 428
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.63 E-value=91 Score=24.40 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 329 (510)
++......+..-.|.++++.+.+.+...+..|.=--++.+.+.|.
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344444444444455555555544444444433333344444443
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.56 E-value=3.8e+02 Score=23.36 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=53.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL-----LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM 290 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 290 (510)
-..+..++++++|..-++..... |....+.. |-+.....|.+|+|+.+++.....+..+ .....--+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHH
Confidence 34456677777777777765532 22223333 3345566777888887777766553221 11222335667
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 010459 291 NFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 291 ~~g~~~~a~~~~~~m~~~~ 309 (510)
..|+-++|+.-|....+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7778888888887777665
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.42 E-value=1.2e+02 Score=23.48 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777665
No 431
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=29.33 E-value=4.5e+02 Score=25.12 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHH-----------HHHHHHcCCHHHH
Q 010459 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC--SPDHITYNLL-----------IQEFACAGLLKRM 263 (510)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~l-----------i~~~~~~g~~~~A 263 (510)
-.+..+.|++.+..+...|+..+. |+...+.+-++++.-... ..+......+ +.-+...|+..+|
T Consensus 150 ~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a 227 (334)
T COG1466 150 KKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKA 227 (334)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHH
Confidence 344566677777777777777666 666666666666543211 1222111111 1123445666666
Q ss_pred HHHHHHHHHCCCcc
Q 010459 264 EGTYKSMLTKRMHL 277 (510)
Q Consensus 264 ~~~~~~m~~~g~~p 277 (510)
..+++++...|.+|
T Consensus 228 ~~~l~~L~~~ge~p 241 (334)
T COG1466 228 LRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHcCCcH
Confidence 66666666655543
No 432
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.25 E-value=2.2e+02 Score=20.55 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
+++.+.+|.-.++|+.+++-|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3344444444444555544444444
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.91 E-value=8.3e+02 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777644
No 434
>PHA02876 ankyrin repeat protein; Provisional
Probab=28.90 E-value=6.3e+02 Score=27.04 Aligned_cols=293 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN--SII 181 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li 181 (510)
+...+....+.|..+-+.-+.+ .|..++... ..+-+...++.|+. ++++.+.+.|..++..... +.+
T Consensus 145 ~~~~l~~~i~~~~~~i~k~Ll~-----~Gadvn~~d~~G~TpLh~Aa~~G~~----~iv~~LL~~Gad~n~~~~~g~t~L 215 (682)
T PHA02876 145 YMKLIKERIQQDELLIAEMLLE-----GGADVNAKDIYCITPIHYAAERGNA----KMVNLLLSYGADVNIIALDDLSVL 215 (682)
T ss_pred hhHHHHHHHHCCcHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHCCCH----HHHHHHHHCCCCcCccCCCCCCHH
Q ss_pred HHHHhcCChHHHHHHH-------------------------HHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHH
Q 010459 182 HGYSKIGKFNEALLFL-------------------------NEMKEMNLSPQSDT--YDGLIQAYGKYKMYDEIDMCLKM 234 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~-------------------------~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~ 234 (510)
...+..|+.+-+..++ ..+.+.|..++... -.+.+...+..|...+..+++-+
T Consensus 216 ~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~ 295 (682)
T PHA02876 216 ECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLE 295 (682)
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 010459 235 MKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314 (510)
Q Consensus 235 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 314 (510)
-...--..|..-.+.+..+.......+....+...=...... |....+.+..+....+..+ +...+.+.|..++.
T Consensus 296 ~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~-d~~g~TpLh~A~~~~~~~~----iv~lLl~~gadin~ 370 (682)
T PHA02876 296 RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA-DRLYITPLHQASTLDRNKD----IVITLLELGANVNA 370 (682)
T ss_pred CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc-ccCCCcHHHHHHHhCCcHH----HHHHHHHcCCCCcc
Q ss_pred HHH--HHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010459 315 DLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392 (510)
Q Consensus 315 ~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 392 (510)
... .+-+...+..|+.+-+..+...-......+....+.+..+....+......-+.+.-..-... |..-++.|..|
T Consensus 371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~-d~~G~TpLh~A 449 (682)
T PHA02876 371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSK-NKDLSTPLHYA 449 (682)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcC-CCCCChHHHHH
Q ss_pred HHcCCChhHHHHHHHhhhhCCCCCC
Q 010459 393 YLKMKDFKHLRVLLSELPTRHVKPD 417 (510)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (510)
..+.+. .++.+.+.+.|..|+
T Consensus 450 a~~~~~----~~iv~lLl~~Gad~n 470 (682)
T PHA02876 450 CKKNCK----LDVIEMLLDNGADVN 470 (682)
T ss_pred HHhCCc----HHHHHHHHHCCCCCC
No 435
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.57 E-value=5.4e+02 Score=26.37 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 242 (510)
...-.++++.. .++.++|..+++++...|..|
T Consensus 243 ~~if~Li~al~-~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 243 ERLRGIAAALA-QGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 33445666554 477888888888888877544
No 436
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.53 E-value=6.6e+02 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 243 (510)
+....-.++++... |+.+.+..++++|...|..|.
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444445555444 666677777777776665553
No 437
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.18 E-value=3.6e+02 Score=27.86 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HH-HHcCCHHHHHHHHHHHHHCCCccCHHH
Q 010459 207 PQSDTYDGLIQAYGKY--KMYDEIDMCLKMMKLDGCSPDHITYNLLIQ--EF-ACAGLLKRMEGTYKSMLTKRMHLRSST 281 (510)
Q Consensus 207 p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t 281 (510)
|+..|..+++.-.... ..-+-+-.+|..|. .|+...|-+|=. .| ...|+...|.+.+.........-..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 5565655554433322 22344666666666 555555544322 12 235777777777666543322212334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHH
Q 010459 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL 356 (510)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 356 (510)
...|.+...+.|..-.|-.++.+..... ...+-++-.+-.+|.-..+++.|.+.+++.....+.+++.-+.+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 4455566666666666777766665544 3445566677777777778888888888777777777776666543
No 438
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.13 E-value=4.3e+02 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHcCCChhHHHHHHHhhhhC
Q 010459 391 LAYLKMKDFKHLRVLLSELPTR 412 (510)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~ 412 (510)
.+|.+..++++|+.=|+.+.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 3666777777777777777753
No 439
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.06 E-value=97 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYN 178 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~ 178 (510)
++.|..+|+..... .|++.+|-
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45566666665543 35555553
No 440
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=26.77 E-value=6.6e+02 Score=25.77 Aligned_cols=35 Identities=3% Similarity=-0.060 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 243 (510)
+....-.|+++..+ |+.+.|..+++++...|..|.
T Consensus 257 ~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 257 DSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 44444556655554 778888888888888776543
No 441
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.56 E-value=6.9e+02 Score=25.38 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHH
Q 010459 318 RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL 355 (510)
Q Consensus 318 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 355 (510)
+.+++-+.+.+-...|...+..+...+++....+.-+|
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~mi 501 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMI 501 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45555555556666666665555555555544444443
No 442
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=4.9e+02 Score=23.55 Aligned_cols=29 Identities=0% Similarity=0.217 Sum_probs=19.7
Q ss_pred HcCCChhHHHHHHHhhhhCCCCCCHHHHH
Q 010459 394 LKMKDFKHLRVLLSELPTRHVKPDIVTIG 422 (510)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (510)
+..+++.+|+.+|++.....+..+..-|+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 45678888888888887665555544443
No 443
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.26 E-value=3.4e+02 Score=26.66 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=33.5
Q ss_pred cchhhhhHHHHHhhhhhH------HHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHH
Q 010459 59 HSTKHTTLLVESYHEHQA------LNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 126 (510)
.+|.+|..+|..|++..- +..+-..|.+.+..|. +..+++..+.+.|++-.--++.
T Consensus 40 ak~~fWrdlI~~~s~~~g~~if~~lr~lq~~F~r~~~vPl------------sLd~Vi~~l~~~G~vir~sdf~ 101 (439)
T KOG2911|consen 40 AKMNFWRDLILKYSRKSGRRIFLVLRTLQELFSRGGGVPL------------SLDTVIDYLIQEGDVIRISDFL 101 (439)
T ss_pred hHhhHHHHHHHHHhhhcCCeEeeHHHHHHHHhccCCCcCc------------cHHHHHHHHHhccCeeeHHHhh
Confidence 467889988888765321 3334444444444443 4557778788888765554443
No 444
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.20 E-value=7.6e+02 Score=25.71 Aligned_cols=182 Identities=9% Similarity=0.081 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
+....++.|+..+.. =+.+.-.++++++.. .+ ...|..++++....|-.....-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 345567777777644 467777788888763 11 678899999999999877666666666555554 333333333
Q ss_pred HHHH--ccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCC-ccCHH
Q 010459 217 QAYG--KYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLL------KRMEGTYKSMLTKRM-HLRSS 280 (510)
Q Consensus 217 ~~~~--~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~~ 280 (510)
.... +.-..+-...+++-+......+.. .++.+++.-++..... ++....+.+...... .-|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 3322 333444444444444433444554 4455555544444431 333333333222111 11333
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010459 281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI 325 (510)
Q Consensus 281 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 325 (510)
--...|++..+.|.......+...+. .....+...-...+.++.
T Consensus 462 ~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALR 505 (574)
T ss_pred heeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHH
Confidence 34556778888887555444433333 222233334344444443
No 445
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.86 E-value=4.8e+02 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010459 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAF 162 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 162 (510)
.+.++..-.|.||--|.-...+.+|-..|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~F 49 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKF 49 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHh
Confidence 33444444444444444444444444444
No 446
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.81 E-value=8e+02 Score=25.85 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHH
Q 010459 117 SRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCE--EGLMEEAVRAFQEMEGFA---------LKPSLEIYNSIIHG 183 (510)
Q Consensus 117 g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g---------~~~~~~~~~~li~~ 183 (510)
+++..|.+.++.+..... ..|-..++-.++.+... .+..+++.+..+++.... ..|-..+|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677778887777665433 33444444445544443 355566666666553221 12345667777665
Q ss_pred HH--hcCChHHHHHHHHHH
Q 010459 184 YS--KIGKFNEALLFLNEM 200 (510)
Q Consensus 184 ~~--~~g~~~~a~~~~~~m 200 (510)
++ ..|+++.+...++++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 54 456655655555444
No 447
>PRK12357 glutaminase; Reviewed
Probab=25.54 E-value=5.9e+02 Score=24.22 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhcchhHHHHH
Q 010459 314 EDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 314 ~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
..+...+......||.++.+-+.
T Consensus 236 ~~~~r~v~a~M~tcGmYd~SG~f 258 (326)
T PRK12357 236 KEVARLTKALMLTCGMYNASGKF 258 (326)
T ss_pred HHHHHHHHHHHHhcCCccchhhH
Confidence 34444555555566777666555
No 448
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.52 E-value=8.6e+02 Score=26.13 Aligned_cols=19 Identities=5% Similarity=-0.169 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHCCCc
Q 010459 258 GLLKRMEGTYKSMLTKRMH 276 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~ 276 (510)
++...++.++++|...|+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5556666666666655553
No 449
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.40 E-value=1.8e+02 Score=25.57 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=55.1
Q ss_pred HHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 010459 76 ALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM 155 (510)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (510)
.++.++..+..++....+.+--+..-...-|..+..+|++.|-+ +. .--..|..-+..+
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~---------lE--PTGGIdl~Nf~~I---------- 194 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY---------LE--PTGGIDLDNFEEI---------- 194 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc---------cC--CCCCccHHhHHHH----------
Confidence 45667777776666655555444555556788888888888743 11 2122233333333
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 156 EEAVRAFQEMEGFALKP-SLEIYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 156 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
++...+.|++. =+..|+++|+--.-.-++++..++|..++
T Consensus 195 ------~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 195 ------VQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ------HHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 33334444321 23556677765555556677777666553
No 450
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.39 E-value=1.5e+02 Score=20.90 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=19.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
..++.+.+.+++++..+.|..|.......+..+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 355666666666666666666555555545544443
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=4.6e+02 Score=22.82 Aligned_cols=74 Identities=16% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHHcCC--HHHHHH
Q 010459 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHITYNLLIQ-EFACAGL--LKRMEG 265 (510)
Q Consensus 191 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~-~~~~~g~--~~~A~~ 265 (510)
++++++-+++.. ++...-.....|++++|..-++++.+. .++.-...|..+.. +++.++. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 455555555533 233333334456777777777666432 11223334555554 5666654 445666
Q ss_pred HHHHHHHC
Q 010459 266 TYKSMLTK 273 (510)
Q Consensus 266 ~~~~m~~~ 273 (510)
++......
T Consensus 91 l~~~l~~~ 98 (204)
T COG2178 91 LYSILKDG 98 (204)
T ss_pred HHHHHhcC
Confidence 66655543
No 452
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=25.10 E-value=2.9e+02 Score=27.12 Aligned_cols=131 Identities=13% Similarity=0.071 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--H--HHHhcCChHHHHHHH
Q 010459 125 VFDMWKNIEKSRINEFN---SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII--H--GYSKIGKFNEALLFL 197 (510)
Q Consensus 125 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~--~~~~~g~~~~a~~~~ 197 (510)
+++.+.+ .|+.|+..+ -.+++.++...+..++..+++.... .+...+...- . .+...+..+.-...+
T Consensus 101 v~kaL~e-~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 101 VVKALWL-RGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHH-cCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHH
Confidence 3344444 778887753 4566666666666666666665321 1111111100 0 011111122233444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------C--------CCCCCHHHHHHHHHHHHHcCCHH
Q 010459 198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL--------D--------GCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 198 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--------~--------g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
+...+.|...|...+...+..+...-.+++|.+--.+... . --.||+..|.++...++--+-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 4555566666766666666666555556665532221110 0 01467777777766666555443
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.87 E-value=3.7e+02 Score=22.68 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=48.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
-+.+.+.|+..+..-- +++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+.+
T Consensus 14 ~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 14 EKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445667877665543 6666666777788999999999999888888887777888888876653
No 454
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.78 E-value=8.4e+02 Score=25.71 Aligned_cols=194 Identities=14% Similarity=0.059 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH----
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLC-EEGLMEEAVRAFQEMEGFALKPSLE---- 175 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~---- 175 (510)
...|..+|.. |.+.++.+.+...++|.. .++--+...+. ...+++.|+..+++....--.++..
T Consensus 30 l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 30 LKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred HHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 3467777765 344455554324444433 34445555555 5688999999998765332222222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC---CCCCHHH
Q 010459 176 -IYNSIIHGYSKIGKFNEALLFLNEMKEM----NLSPQSDTYDGL-IQAYGKYKMYDEIDMCLKMMKLDG---CSPDHIT 246 (510)
Q Consensus 176 -~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~ 246 (510)
.-..++..+.+.+... |...+++..+. +..+=...|.-+ +..+...++...|.+.++.+...- ..|-..+
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 2234566666666555 88888776543 222223333433 333333478888998888876432 2445555
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHCCC---------ccCHHHHHHHHHHHHh--cCChhHHHHHHHHHH
Q 010459 247 YNLLIQEFAC--AGLLKRMEGTYKSMLTKRM---------HLRSSTMVAILDAYMN--FGMLDKMEKFYKRLL 306 (510)
Q Consensus 247 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~ 306 (510)
+-.++.+... .+..+++.+..+++..... .|-..+|..+++.++. .|+++.+.+.++++.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566665554 4556777777777643221 2345677777776664 566667766665554
No 455
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=24.63 E-value=4.4e+02 Score=22.45 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
...++..+.+.|..-|..--.+.|..-.+.| ..-..+.+++.+.|+ +..+....+..+......+.|.+++..-.+
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 3444444444444444433344455555555 334466666777774 444555555555555555556655554443
Q ss_pred cC-CCCCHHHHHHHHHHHHhhc
Q 010459 308 SR-TPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 308 ~~-~~~~~~~~~~li~~~~~~~ 328 (510)
.. ..++......+...+...|
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcC
Confidence 33 3455444444444444333
No 456
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.50 E-value=2.8e+02 Score=20.07 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFA 169 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g 169 (510)
+++.+.+|.-.++|+++++-|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666666666666666666665
No 457
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.08 E-value=7.7e+02 Score=25.07 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=52.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459 167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246 (510)
Q Consensus 167 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 246 (510)
+.|+..+......+.. ...|+...|+.++++....+ ....|+..+...+ |+ .+...
T Consensus 195 ~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------------g~-~~~~~ 250 (484)
T PRK14956 195 IENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------------GY-HGIEF 250 (484)
T ss_pred HcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-------------------CC-CCHHH
Confidence 3456666666655553 34688888888888764321 1112333222211 32 35556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 280 (510)
...++.+....+....|+.++++|.+.|..|..+
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666666555555667888888888888766543
No 458
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=23.92 E-value=2.1e+02 Score=18.69 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=14.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPSL 174 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 174 (510)
-++.+.|+++.|.+..+.+.+. +|+-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~--eP~N 34 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI--EPDN 34 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH--TTS-
T ss_pred HHHHHhhhHHHHHHHHHHHHhh--CCCc
Confidence 3455666666666666666654 4443
No 459
>PRK09857 putative transposase; Provisional
Probab=23.89 E-value=6e+02 Score=23.76 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 277 (510)
..+++...+.++.++..++++.+.+.. +......-++..-+.+.|.-+++.++-..|...|+.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444445555555555555554431 2222222233344444444445555555555555543
No 460
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=23.88 E-value=6.2e+02 Score=23.88 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 010459 193 ALLFLNEM 200 (510)
Q Consensus 193 a~~~~~~m 200 (510)
|.++|+..
T Consensus 186 ~~~lFk~~ 193 (412)
T KOG2297|consen 186 AVKLFKEW 193 (412)
T ss_pred HHHHHHHH
Confidence 44444443
No 461
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.54 E-value=1.6e+02 Score=22.96 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010459 188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223 (510)
Q Consensus 188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 223 (510)
|+.+.....+-.+.. |...|...+...+.++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 555555554444444 45556666666665555444
No 462
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=7.1e+02 Score=24.39 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCC-CCCH-
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL------------IQAYGKYKMYDEIDMCLKMMKLDGC-SPDH- 244 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~-~~~~- 244 (510)
.|...+-..|+.++|..++.+. .+.||.++ ++.|.-.+++-.|.-+-+.+...=+ .||.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el-------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCEL-------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 3445677889999999988776 34466443 3445555666666655555543211 2332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHHHHHH
Q 010459 245 ----ITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVA 284 (510)
Q Consensus 245 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ 284 (510)
.-|+.||....+.+.+=.+-+.|+..-..| ++-|+.-|..
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 347777887777788888888887776554 3334433433
No 463
>PRK12357 glutaminase; Reviewed
Probab=23.32 E-value=6.5e+02 Score=23.95 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010459 133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL------EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206 (510)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 206 (510)
-|..|+-..||+++..= +...|.+.|+ .+-.+||.+-....+++..+++++++-...+.
T Consensus 96 VG~EPSG~~FNSi~~Le---------------~~~~g~P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~ 160 (326)
T PRK12357 96 VDVEPTGDAFNSIIRLE---------------IHKPGKPFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPA 160 (326)
T ss_pred hCCCCCCCCcchhhhhh---------------hcCCCCCCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCc
Confidence 47788888888876432 1122333332 23334443322223455556666666544555
Q ss_pred CCHHHHHH
Q 010459 207 PQSDTYDG 214 (510)
Q Consensus 207 p~~~t~~~ 214 (510)
.|..+|.+
T Consensus 161 ~d~~v~~S 168 (326)
T PRK12357 161 INEEVFQS 168 (326)
T ss_pred cCHHHHHH
Confidence 56665543
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.01 E-value=5.1e+02 Score=28.35 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 010459 74 HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153 (510)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 153 (510)
++..++.+...+....... ++|..+.+.|.++-|+...+.=.. -...+..+|
T Consensus 606 ~k~ydeVl~lI~ns~LvGq---------------aiIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~g 657 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQ---------------AIIAYLQKKGYPEIALHFVKDERT-------------RFELALECG 657 (1202)
T ss_pred hhhhHHHHHHHHhcCcccH---------------HHHHHHHhcCCcceeeeeecCcch-------------heeeehhcC
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233 (510)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 233 (510)
+++.|++.-..+- +..+|..|.......|+.+-|.-.|++.+.. +-|--.|.-.|+.++-.++.+
T Consensus 658 nle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 658 NLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred CHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 234 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
... ..+..+-.-+...| .|+.++-.++++.
T Consensus 723 iae----~r~D~~~~~qnalY--l~dv~ervkIl~n 752 (1202)
T KOG0292|consen 723 IAE----IRNDATGQFQNALY--LGDVKERVKILEN 752 (1202)
T ss_pred HHH----hhhhhHHHHHHHHH--hccHHHHHHHHHh
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.74 E-value=3.2e+02 Score=20.14 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
++|+-....|+..|...|..+++...-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444555555555554
No 466
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=22.53 E-value=1.1e+02 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred hccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCCCC
Q 010459 464 GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGT 509 (510)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 509 (510)
...|+.+.|.++++.+.. ...|+ -|..++.|+...|..++|..
T Consensus 45 ~~~g~~~aa~~Ll~~L~~-~r~~~--wf~~Fl~AL~~~g~~~la~~ 87 (88)
T cd08812 45 RNKGNIAAAEELLDRLER-CDKPG--WFQAFLDALRRTGNDDLAKE 87 (88)
T ss_pred hccChHHHHHHHHHHHHH-hccCC--cHHHHHHHHHHcCCccHHHh
Confidence 345888899999998886 12556 67799999999998887754
No 467
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.17 E-value=1.1e+03 Score=25.93 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCC
Q 010459 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-------------KPSLEIYNSIIHGYSKIGK 189 (510)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~~~~~~~~~li~~~~~~g~ 189 (510)
.+.++.+.+.+++..+......+... ..|++.+|+.++++....+- ..+...+..++..+ ..++
T Consensus 184 v~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~d 260 (830)
T PRK07003 184 VSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAGD 260 (830)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcCC
Confidence 33344433334555555544444332 35777777777766543220 11222233333333 2355
Q ss_pred hHHHHHHHHHHHHCCCC
Q 010459 190 FNEALLFLNEMKEMNLS 206 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~ 206 (510)
..+++++++++...|+.
T Consensus 261 ~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 261 GPEILAVADEMALRSLS 277 (830)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666666555544
No 468
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.05 E-value=7.8e+02 Score=24.36 Aligned_cols=168 Identities=8% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC---CC-ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459 259 LLKRMEGTYKSMLTK---RM-HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 259 ~~~~A~~~~~~m~~~---g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (510)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+...+... ..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHH
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhh---cccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhH-----HHHHH
Q 010459 335 DLGDDLASRIGRTELVWCLRLLSHACL---LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKH-----LRVLL 406 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-----A~~~~ 406 (510)
.+.........+.......+++++.+. .+.+.|+..+..|.+.|..|..+.-..++.++-.-|.-+- |...+
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 407 SELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 407 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+....-|..-........+--++.+-+-..+..-+++.
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 469
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=21.92 E-value=75 Score=21.02 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=18.9
Q ss_pred CchhHHHHHHhhcCCCCCCCCcccHHHHHHHH
Q 010459 467 HFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498 (510)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 498 (510)
|-.++...+|+.|..+..+|....|+-.+.-|
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 44455566777777766666666665444433
No 470
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=8.9e+02 Score=24.98 Aligned_cols=215 Identities=11% Similarity=-0.022 Sum_probs=102.0
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCC--CCCHH
Q 010459 63 HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEF 140 (510)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~ 140 (510)
.+...+.+++..+.+.+++...++..-. +..|-.++..+...|...+|....-+-.+ .+- .-...
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~~------------~~~yl~~v~llle~~~~~~a~~wl~~~~r-~a~~q~~t~q 371 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAEG------------PGSYLDLVELLLESGEPSKAELWLARGIR-TAREQLQTTQ 371 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhcC------------cccHHHHHHHHHhcCChhHHHHHHHHHHh-hhhHhhhhhh
Confidence 3445555566666666665555422111 22455666667777777666654433222 111 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 220 (510)
..-.+...+...|++..|.++=...... .||..+|--|=.+-...|-.++-.+..-.-.+.|..| +..+..+.-
T Consensus 372 ~~q~l~el~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~~~~~~p----~~~~~~~l~ 445 (587)
T COG4715 372 LPQTLAELKEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREEREAALAYLEVGESP----FAIWPGALP 445 (587)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHHHHHHHHHhccCc----hhhhhhhhh
Confidence 3456666777777777777666555544 5565555544333333332222222222223444454 222222222
Q ss_pred ccCCHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH---HHHhcCCh
Q 010459 221 KYKMYDE--IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD---AYMNFGML 295 (510)
Q Consensus 221 ~~g~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~ 295 (510)
+.|.... ...+. ...-..++.++.+.....++.+-+.+....|+.--..++..+++ .......+
T Consensus 446 ~~g~~~p~d~~~li-----------~~~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~~~i~~n~i~~A~~~~~p 514 (587)
T COG4715 446 LTGLLWPADRRTLI-----------TRLLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYALHIVENKIVNAVPEKYP 514 (587)
T ss_pred hcccCCcchhhhHh-----------hhhHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhHHhHHHHHHHhhhhccCc
Confidence 2221111 11111 11223456677777777777777777666665433344444433 22223345
Q ss_pred hHHHHHHHHHHh
Q 010459 296 DKMEKFYKRLLN 307 (510)
Q Consensus 296 ~~a~~~~~~m~~ 307 (510)
+-|..++.+.-+
T Consensus 515 eia~~~~~r~Ae 526 (587)
T COG4715 515 EIALLIWKRVAE 526 (587)
T ss_pred hHHHHHHHHHHH
Confidence 666666655443
No 471
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=1.1e+03 Score=25.90 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=31.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH--ITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
..+=..|...|+++.|.++-..- |+. .++..-.+.|.+.+++..|-+++.++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34445566677777777654322 221 122233455667778888888888873
No 472
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.88 E-value=7e+02 Score=27.51 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.6
Q ss_pred HHHHCCCCc
Q 010459 373 EMESAKVRW 381 (510)
Q Consensus 373 ~m~~~g~~p 381 (510)
.+.+.|..|
T Consensus 640 ~Ll~~Gadi 648 (823)
T PLN03192 640 ELLKQGLNV 648 (823)
T ss_pred HHHHCCCCC
Confidence 333444443
No 473
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.87 E-value=2.5e+02 Score=21.64 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010459 193 ALLFLNEMKE 202 (510)
Q Consensus 193 a~~~~~~m~~ 202 (510)
|.++++.+.+
T Consensus 19 a~ei~~~l~~ 28 (116)
T cd07153 19 AEEIYERLRK 28 (116)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 474
>COG0819 TenA Putative transcription activator [Transcription]
Probab=20.59 E-value=6.1e+02 Score=22.56 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHh
Q 010459 278 RSSTMVAILDAYMN 291 (510)
Q Consensus 278 ~~~t~~~ll~~~~~ 291 (510)
...-|...|+.|+.
T Consensus 154 ~~~~Y~~Wi~~Y~s 167 (218)
T COG0819 154 PNPPYQEWIDTYAS 167 (218)
T ss_pred CCCcHHHHHHHcCC
Confidence 33455556666654
No 475
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.36 E-value=9.4e+02 Score=24.69 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG---C----------SPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 201 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
.+.|+..+......++... .|++..|..++++....| + .++......++++. ..|+.+.+++++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3455655555555554432 466667776666554332 0 12333334455543 447788888888
Q ss_pred HHHHHCCCccC
Q 010459 268 KSMLTKRMHLR 278 (510)
Q Consensus 268 ~~m~~~g~~p~ 278 (510)
++|...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 88888887664
No 476
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.21 E-value=1e+03 Score=25.13 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=43.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 201 KEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-------------SPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 201 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
.+.|+..+......++.. ..|++..+..++++....|- ..+......++++. ..|+...+++++
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL-~~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL-AQGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 445666666666665553 34677777777765543321 12223333444443 346777888888
Q ss_pred HHHHHCCCccC
Q 010459 268 KSMLTKRMHLR 278 (510)
Q Consensus 268 ~~m~~~g~~p~ 278 (510)
++|...|..|.
T Consensus 274 ~~l~~~G~~~~ 284 (618)
T PRK14951 274 DELRLNGLSAA 284 (618)
T ss_pred HHHHHcCCCHH
Confidence 88877776543
No 477
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.10 E-value=1.7e+02 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
.|+.+.+.+++++....|..|.......+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~ 43 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILM 43 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444555555544444444443333333
Done!