Query 010459
Match_columns 510
No_of_seqs 568 out of 3008
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-38 1.3E-42 327.2 28.7 443 44-507 63-569 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-36 1E-40 312.9 30.1 447 32-498 82-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.6E-34 8.8E-39 287.9 25.0 207 121-328 8-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 2E-33 6.9E-38 281.4 24.9 198 94-292 16-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2E-25 6.7E-30 218.7 41.1 381 109-502 5-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.6E-24 2.6E-28 207.4 42.5 361 69-447 7-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.2E-21 7.4E-26 193.7 36.0 301 102-411 25-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.3E-20 4.4E-25 188.1 37.1 364 135-508 22-445 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.7E-21 1.6E-25 194.4 32.4 368 105-481 8-477 (514)
10 2gw1_A Mitochondrial precursor 99.9 3.2E-20 1.1E-24 188.3 30.5 358 140-507 7-468 (514)
11 3fp2_A TPR repeat-containing p 99.9 9.9E-19 3.4E-23 178.4 33.8 369 104-481 26-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 5E-17 1.7E-21 156.4 36.8 302 103-411 3-334 (359)
13 3spa_A Mtrpol, DNA-directed RN 99.8 1E-20 3.4E-25 194.8 11.0 151 138-293 126-286 (1134)
14 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-20 5.8E-25 193.2 10.7 151 173-328 126-286 (1134)
15 3ieg_A DNAJ homolog subfamily 99.8 1.7E-16 5.9E-21 152.6 36.2 211 138-352 2-226 (359)
16 3fp2_A TPR repeat-containing p 99.8 4.5E-18 1.5E-22 173.6 26.3 360 139-507 25-481 (537)
17 3hym_B Cell division cycle pro 99.8 6.4E-17 2.2E-21 153.8 30.8 292 102-428 21-314 (330)
18 3hym_B Cell division cycle pro 99.8 1.3E-16 4.6E-21 151.6 31.8 296 134-470 17-322 (330)
19 1fch_A Peroxisomal targeting s 99.8 4.3E-17 1.5E-21 157.8 25.2 289 115-407 37-354 (368)
20 1fch_A Peroxisomal targeting s 99.8 6.9E-17 2.4E-21 156.3 22.7 289 150-442 36-354 (368)
21 1b89_A Protein (clathrin heavy 99.7 3.9E-17 1.3E-21 156.4 18.1 279 46-369 15-303 (449)
22 1b89_A Protein (clathrin heavy 99.7 4.6E-17 1.6E-21 155.9 17.7 268 101-406 30-305 (449)
23 4eqf_A PEX5-related protein; a 99.7 3.8E-16 1.3E-20 151.1 23.6 262 142-408 68-352 (365)
24 4eqf_A PEX5-related protein; a 99.7 2.4E-16 8.4E-21 152.5 21.8 236 173-411 64-309 (365)
25 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.8E-20 145.0 25.8 266 104-410 22-313 (327)
26 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.4E-19 148.7 34.3 394 102-505 12-480 (530)
27 3cv0_A Peroxisome targeting si 99.7 2.2E-15 7.4E-20 143.0 24.5 230 101-336 53-308 (327)
28 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.4E-20 140.7 23.2 248 113-376 9-263 (291)
29 2xm6_A Protein corresponding t 99.7 8E-13 2.7E-17 133.2 43.8 352 102-483 38-433 (490)
30 3mkr_A Coatomer subunit epsilo 99.7 8.3E-15 2.8E-19 136.7 26.0 250 147-411 7-263 (291)
31 2ooe_A Cleavage stimulation fa 99.7 3.5E-13 1.2E-17 137.2 38.2 406 60-481 12-491 (530)
32 2xm6_A Protein corresponding t 99.7 3.9E-12 1.3E-16 128.1 44.0 338 74-448 56-433 (490)
33 4g1t_A Interferon-induced prot 99.6 2.1E-13 7E-18 136.7 29.5 373 103-491 51-469 (472)
34 1xi4_A Clathrin heavy chain; a 99.6 3.5E-12 1.2E-16 136.1 35.9 352 106-507 988-1374(1630)
35 1xi4_A Clathrin heavy chain; a 99.6 4E-12 1.4E-16 135.7 34.8 343 109-502 1055-1415(1630)
36 3uq3_A Heat shock protein STI1 99.6 3.7E-13 1.3E-17 122.8 23.6 180 141-333 7-192 (258)
37 3uq3_A Heat shock protein STI1 99.6 6.8E-13 2.3E-17 120.9 24.7 226 104-344 6-237 (258)
38 4g1t_A Interferon-induced prot 99.6 5.9E-12 2E-16 126.0 33.3 329 102-447 93-459 (472)
39 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-12 1.3E-16 115.7 27.3 202 103-309 37-239 (252)
40 2pl2_A Hypothetical conserved 99.5 1.2E-12 3.9E-17 116.6 22.9 196 173-373 4-210 (217)
41 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.3E-16 109.9 28.0 198 105-306 10-209 (225)
42 2vq2_A PILW, putative fimbrial 99.5 5.4E-12 1.9E-16 112.3 25.6 213 137-352 6-220 (225)
43 2ho1_A Type 4 fimbrial biogene 99.5 7.8E-12 2.7E-16 113.7 27.0 206 139-348 37-243 (252)
44 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.6E-17 116.2 20.9 198 101-305 3-211 (217)
45 2q7f_A YRRB protein; TPR, prot 99.5 2.2E-12 7.5E-17 116.5 22.2 203 101-309 21-223 (243)
46 2q7f_A YRRB protein; TPR, prot 99.5 2.2E-12 7.5E-17 116.5 22.0 212 137-353 21-232 (243)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-12 4.5E-17 120.5 19.7 246 151-441 17-269 (275)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.2E-13 2.8E-17 121.8 17.9 253 113-406 15-269 (275)
49 3u4t_A TPR repeat-containing p 99.5 7.9E-12 2.7E-16 115.1 24.4 243 104-351 4-258 (272)
50 1ouv_A Conserved hypothetical 99.5 1.7E-10 5.9E-15 106.3 32.7 158 139-308 6-179 (273)
51 3u4t_A TPR repeat-containing p 99.5 1.9E-11 6.4E-16 112.5 26.0 243 141-420 5-256 (272)
52 1ouv_A Conserved hypothetical 99.5 1.4E-10 4.7E-15 107.0 31.8 220 102-340 5-248 (273)
53 2h6f_A Protein farnesyltransfe 99.5 2.7E-11 9.2E-16 116.9 26.1 195 105-305 99-302 (382)
54 2h6f_A Protein farnesyltransfe 99.5 3.1E-11 1.1E-15 116.5 26.4 249 139-394 97-364 (382)
55 2ond_A Cleavage stimulation fa 99.4 7.1E-10 2.4E-14 104.2 28.2 183 226-411 81-269 (308)
56 4a1s_A PINS, partner of inscut 99.4 1.9E-11 6.4E-16 119.9 17.8 26 385-410 345-370 (411)
57 2ond_A Cleavage stimulation fa 99.4 6.8E-10 2.3E-14 104.4 27.7 217 120-342 33-269 (308)
58 3sf4_A G-protein-signaling mod 99.4 3.1E-11 1.1E-15 117.9 19.0 61 350-410 269-334 (406)
59 3ro2_A PINS homolog, G-protein 99.3 3.3E-11 1.1E-15 114.1 17.4 88 147-235 13-109 (338)
60 3nf1_A KLC 1, kinesin light ch 99.3 4.4E-11 1.5E-15 112.1 17.9 245 139-411 27-306 (311)
61 4a1s_A PINS, partner of inscut 99.3 2.9E-11 1E-15 118.5 16.2 274 140-444 49-369 (411)
62 3e4b_A ALGK; tetratricopeptide 99.3 9E-11 3.1E-15 116.6 19.8 347 109-484 9-389 (452)
63 3sf4_A G-protein-signaling mod 99.3 6.5E-11 2.2E-15 115.6 18.3 278 136-444 6-333 (406)
64 3vtx_A MAMA; tetratricopeptide 99.3 7.4E-10 2.5E-14 95.3 22.9 167 138-308 4-170 (184)
65 3ro2_A PINS homolog, G-protein 99.3 3.7E-11 1.3E-15 113.7 15.6 167 174-341 5-210 (338)
66 3vtx_A MAMA; tetratricopeptide 99.3 5.1E-10 1.8E-14 96.3 21.3 166 208-411 4-169 (184)
67 4e6h_A MRNA 3'-END-processing 99.3 1.4E-08 4.7E-13 104.7 34.9 135 101-237 64-222 (679)
68 4abn_A Tetratricopeptide repea 99.3 2.4E-10 8.1E-15 114.3 21.2 214 155-409 84-318 (474)
69 4abn_A Tetratricopeptide repea 99.3 2.6E-10 8.8E-15 114.0 20.3 212 118-336 83-314 (474)
70 3ulq_A Response regulator aspa 99.3 2.9E-10 9.7E-15 110.5 19.7 226 113-340 22-290 (383)
71 3e4b_A ALGK; tetratricopeptide 99.2 7.5E-10 2.6E-14 109.9 22.5 376 67-480 9-419 (452)
72 3nf1_A KLC 1, kinesin light ch 99.2 2.2E-10 7.6E-15 107.3 17.1 241 103-344 27-308 (311)
73 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6.3E-14 92.3 20.7 164 140-307 9-172 (186)
74 3ulq_A Response regulator aspa 99.2 1.5E-09 5.2E-14 105.3 21.9 299 149-481 22-367 (383)
75 3as5_A MAMA; tetratricopeptide 99.2 1.9E-09 6.5E-14 92.3 18.9 165 104-273 9-173 (186)
76 4e6h_A MRNA 3'-END-processing 99.1 1.3E-07 4.5E-12 97.5 33.0 152 119-273 48-223 (679)
77 1hz4_A MALT regulatory protein 99.1 2.7E-08 9.1E-13 96.0 26.6 159 112-271 23-201 (373)
78 3edt_B KLC 2, kinesin light ch 99.1 1.4E-09 4.9E-14 100.0 14.8 228 114-342 12-280 (283)
79 4gyw_A UDP-N-acetylglucosamine 99.1 7.1E-09 2.4E-13 108.1 21.4 165 139-307 9-173 (723)
80 1hz4_A MALT regulatory protein 99.1 3.5E-08 1.2E-12 95.2 24.1 270 142-411 17-321 (373)
81 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4.1E-14 100.6 13.0 157 151-307 13-197 (283)
82 3q15_A PSP28, response regulat 99.1 2.3E-08 7.9E-13 96.8 22.3 311 134-481 5-364 (378)
83 4i17_A Hypothetical protein; T 99.0 5.6E-08 1.9E-12 86.6 23.0 150 137-290 5-164 (228)
84 3q15_A PSP28, response regulat 99.0 2.5E-08 8.6E-13 96.5 21.3 228 114-341 23-288 (378)
85 2fo7_A Synthetic consensus TPR 99.0 2.3E-08 7.8E-13 80.3 17.3 129 141-272 3-131 (136)
86 4gyw_A UDP-N-acetylglucosamine 99.0 2.6E-08 8.8E-13 103.9 21.5 164 173-340 8-171 (723)
87 4i17_A Hypothetical protein; T 99.0 8.8E-08 3E-12 85.3 22.0 154 171-328 4-167 (228)
88 2fo7_A Synthetic consensus TPR 99.0 4.9E-08 1.7E-12 78.3 17.3 132 175-309 2-133 (136)
89 3mv2_B Coatomer subunit epsilo 98.9 2.3E-07 7.8E-12 85.2 22.7 145 158-307 85-239 (310)
90 3mv2_B Coatomer subunit epsilo 98.8 9.2E-07 3.2E-11 81.2 22.8 180 122-309 85-283 (310)
91 1qqe_A Vesicular transport pro 98.8 1.6E-07 5.6E-12 87.2 17.0 199 105-305 39-266 (292)
92 1qqe_A Vesicular transport pro 98.8 3.2E-07 1.1E-11 85.2 18.0 69 224-307 32-105 (292)
93 3qky_A Outer membrane assembly 98.8 8.7E-07 3E-11 80.6 20.7 168 140-309 16-225 (261)
94 3urz_A Uncharacterized protein 98.7 7.2E-07 2.4E-11 78.2 18.5 136 285-425 60-197 (208)
95 3urz_A Uncharacterized protein 98.7 8.2E-07 2.8E-11 77.8 17.8 131 180-316 60-192 (208)
96 3rjv_A Putative SEL1 repeat pr 98.7 3.1E-06 1.1E-10 74.3 21.2 178 120-310 3-199 (212)
97 2pzi_A Probable serine/threoni 98.7 2.8E-07 9.4E-12 96.3 16.4 174 220-398 402-583 (681)
98 3dra_A Protein farnesyltransfe 98.7 2.6E-05 8.7E-10 72.2 27.7 223 156-411 50-286 (306)
99 2pzi_A Probable serine/threoni 98.7 8.9E-07 3.1E-11 92.5 19.6 184 255-444 402-602 (681)
100 3qky_A Outer membrane assembly 98.7 2.4E-06 8.1E-11 77.7 20.1 173 171-345 12-226 (261)
101 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 78.1 13.3 158 145-306 12-171 (176)
102 2uy1_A Cleavage stimulation fa 98.7 1.6E-05 5.5E-10 79.3 27.5 342 117-481 28-412 (493)
103 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.7E-06 5.7E-11 76.8 18.4 187 103-309 4-214 (225)
104 3dra_A Protein farnesyltransfe 98.6 3E-05 1E-09 71.8 26.8 226 110-341 39-285 (306)
105 2vsy_A XCC0866; transferase, g 98.6 9.4E-07 3.2E-11 90.4 18.5 154 116-274 2-158 (568)
106 2yhc_A BAMD, UPF0169 lipoprote 98.6 4.2E-06 1.4E-10 74.3 20.5 189 139-347 4-217 (225)
107 3qou_A Protein YBBN; thioredox 98.6 1.1E-06 3.6E-11 81.4 17.0 167 136-306 114-282 (287)
108 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.9E-11 89.8 18.4 131 104-238 24-157 (568)
109 3u3w_A Transcriptional activat 98.6 1.7E-06 6E-11 80.2 17.9 198 100-307 43-265 (293)
110 2r5s_A Uncharacterized protein 98.6 6.7E-07 2.3E-11 76.0 12.8 58 249-307 11-68 (176)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.9E-06 1.3E-10 73.4 18.0 128 142-274 9-151 (213)
112 3qou_A Protein YBBN; thioredox 98.6 2.4E-06 8.4E-11 78.9 17.4 174 155-336 102-277 (287)
113 2uy1_A Cleavage stimulation fa 98.6 0.00014 4.9E-09 72.4 31.1 328 100-444 44-410 (493)
114 3rjv_A Putative SEL1 repeat pr 98.5 9.3E-06 3.2E-10 71.2 19.4 142 157-308 4-158 (212)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 3.2E-06 1.1E-10 79.0 17.3 190 116-306 4-222 (307)
116 4ga2_A E3 SUMO-protein ligase 98.5 7.1E-07 2.4E-11 73.7 11.2 57 250-307 37-93 (150)
117 3u3w_A Transcriptional activat 98.5 3.7E-05 1.3E-09 71.1 23.8 208 125-342 33-265 (293)
118 4ga2_A E3 SUMO-protein ligase 98.5 1E-06 3.5E-11 72.7 11.3 140 254-397 7-148 (150)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.1E-05 3.8E-10 70.5 18.5 130 175-309 7-151 (213)
120 1na0_A Designed protein CTPR3; 98.5 7.2E-06 2.5E-10 64.3 15.3 94 141-236 11-104 (125)
121 1na0_A Designed protein CTPR3; 98.5 9.4E-06 3.2E-10 63.6 15.7 98 174-273 9-106 (125)
122 1a17_A Serine/threonine protei 98.4 9.7E-06 3.3E-10 67.5 16.5 127 141-270 15-143 (166)
123 2qfc_A PLCR protein; TPR, HTH, 98.4 0.0001 3.5E-09 68.1 24.9 167 140-306 76-264 (293)
124 2ifu_A Gamma-SNAP; membrane fu 98.4 5.1E-06 1.8E-10 77.6 15.3 194 105-301 38-254 (307)
125 1a17_A Serine/threonine protei 98.4 1.5E-05 5.3E-10 66.2 16.3 130 174-306 13-144 (166)
126 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.6E-09 67.6 24.3 177 143-324 58-252 (349)
127 2c2l_A CHIP, carboxy terminus 98.4 5.3E-06 1.8E-10 76.4 14.0 98 173-272 3-100 (281)
128 3q7a_A Farnesyltransferase alp 98.4 0.00028 9.5E-09 66.1 25.3 177 112-294 63-257 (349)
129 3gw4_A Uncharacterized protein 98.3 6.1E-06 2.1E-10 71.4 12.9 157 150-307 3-175 (203)
130 2vyi_A SGTA protein; chaperone 98.3 1.6E-05 5.3E-10 62.9 14.3 116 140-258 13-128 (131)
131 2lni_A Stress-induced-phosphop 98.3 1.7E-05 5.6E-10 63.2 14.4 97 174-272 16-112 (133)
132 2lni_A Stress-induced-phosphop 98.3 1.5E-05 5.3E-10 63.3 14.1 118 138-258 15-132 (133)
133 2vyi_A SGTA protein; chaperone 98.3 2.2E-05 7.4E-10 62.1 14.8 119 173-294 11-129 (131)
134 2e2e_A Formate-dependent nitri 98.3 8.1E-06 2.8E-10 69.2 12.7 123 113-239 20-145 (177)
135 3gyz_A Chaperone protein IPGC; 98.3 2.2E-05 7.4E-10 64.6 14.6 97 140-238 37-133 (151)
136 3gw4_A Uncharacterized protein 98.3 4.8E-06 1.7E-10 72.1 11.3 156 114-272 3-175 (203)
137 2c2l_A CHIP, carboxy terminus 98.3 7E-06 2.4E-10 75.6 12.9 99 208-308 3-101 (281)
138 4gco_A Protein STI-1; structur 98.3 3.3E-05 1.1E-09 61.3 14.7 92 178-271 17-108 (126)
139 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00013 4.3E-09 67.5 20.8 27 383-409 236-263 (293)
140 2e2e_A Formate-dependent nitri 98.2 8.8E-06 3E-10 68.9 11.4 121 151-274 22-145 (177)
141 3gyz_A Chaperone protein IPGC; 98.2 6.3E-06 2.1E-10 67.8 10.0 98 174-273 36-133 (151)
142 1p5q_A FKBP52, FK506-binding p 98.2 3.1E-05 1.1E-09 73.3 16.0 151 116-271 126-292 (336)
143 4gco_A Protein STI-1; structur 98.2 6.1E-05 2.1E-09 59.7 15.0 98 210-309 14-111 (126)
144 4f3v_A ESX-1 secretion system 98.2 8.5E-05 2.9E-09 67.2 17.3 190 151-346 18-240 (282)
145 1p5q_A FKBP52, FK506-binding p 98.2 3.7E-05 1.3E-09 72.7 15.7 132 173-306 146-292 (336)
146 2vgx_A Chaperone SYCD; alterna 98.2 1.1E-05 3.8E-10 66.2 10.0 91 178-270 25-115 (148)
147 1elw_A TPR1-domain of HOP; HOP 98.1 0.00011 3.8E-09 56.6 15.1 95 141-237 6-100 (118)
148 2fbn_A 70 kDa peptidylprolyl i 98.1 7.1E-06 2.4E-10 71.0 8.5 148 113-264 14-176 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.1 0.00013 4.5E-09 56.2 15.2 98 174-273 4-101 (118)
150 4f3v_A ESX-1 secretion system 98.1 0.00012 4.2E-09 66.2 16.1 197 115-320 18-247 (282)
151 2fbn_A 70 kDa peptidylprolyl i 98.1 6.7E-06 2.3E-10 71.2 7.6 158 145-305 10-183 (198)
152 3upv_A Heat shock protein STI1 98.1 0.00014 4.9E-09 57.3 14.6 95 176-272 6-100 (126)
153 2vgx_A Chaperone SYCD; alterna 98.0 4.8E-05 1.6E-09 62.3 11.5 99 208-308 20-118 (148)
154 2kck_A TPR repeat; tetratricop 98.0 5.4E-05 1.8E-09 57.9 11.1 56 145-201 12-67 (112)
155 2dba_A Smooth muscle cell asso 98.0 0.0002 7E-09 57.9 15.1 97 138-237 27-127 (148)
156 2dba_A Smooth muscle cell asso 98.0 0.00028 9.6E-09 57.0 15.6 99 172-273 26-128 (148)
157 3upv_A Heat shock protein STI1 98.0 0.00018 6.3E-09 56.7 14.0 97 140-238 5-101 (126)
158 3q49_B STIP1 homology and U bo 98.0 0.00017 5.8E-09 57.6 14.0 96 174-271 9-104 (137)
159 3dss_A Geranylgeranyl transfer 98.0 0.0086 2.9E-07 55.7 26.7 45 364-411 254-303 (331)
160 2xcb_A PCRH, regulatory protei 98.0 0.00012 4.2E-09 59.2 12.7 17 252-268 94-110 (142)
161 1elr_A TPR2A-domain of HOP; HO 98.0 9.3E-05 3.2E-09 58.4 11.6 27 246-272 81-107 (131)
162 2xcb_A PCRH, regulatory protei 98.0 0.00011 3.8E-09 59.5 12.3 97 140-238 19-115 (142)
163 1elr_A TPR2A-domain of HOP; HO 97.9 0.00022 7.5E-09 56.1 13.6 113 209-324 4-122 (131)
164 4b4t_Q 26S proteasome regulato 97.9 0.0016 5.4E-08 63.5 22.5 194 148-341 13-243 (434)
165 3dss_A Geranylgeranyl transfer 97.9 0.014 4.7E-07 54.3 27.6 48 397-447 252-304 (331)
166 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00023 7.9E-09 59.2 13.7 97 174-272 11-107 (164)
167 3q49_B STIP1 homology and U bo 97.9 0.00032 1.1E-08 56.0 14.1 100 207-308 7-106 (137)
168 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00048 1.6E-08 57.2 15.6 99 208-308 10-108 (164)
169 2kck_A TPR repeat; tetratricop 97.9 9.3E-05 3.2E-09 56.5 10.4 100 103-205 6-108 (112)
170 4gcn_A Protein STI-1; structur 97.9 0.00029 9.9E-09 55.8 13.4 95 212-307 11-111 (127)
171 4gcn_A Protein STI-1; structur 97.9 0.00022 7.6E-09 56.5 12.5 57 144-201 13-69 (127)
172 1hxi_A PEX5, peroxisome target 97.8 0.00022 7.7E-09 55.9 11.0 89 146-236 24-112 (121)
173 3ro3_A PINS homolog, G-protein 97.8 0.00016 5.4E-09 59.4 10.7 60 141-200 11-75 (164)
174 3ro3_A PINS homolog, G-protein 97.8 0.00017 6E-09 59.1 10.9 134 174-307 9-157 (164)
175 1hxi_A PEX5, peroxisome target 97.8 0.00024 8.2E-09 55.7 11.0 92 108-202 22-113 (121)
176 4b4t_Q 26S proteasome regulato 97.7 0.001 3.6E-08 64.8 17.3 198 110-307 11-244 (434)
177 1wao_1 Serine/threonine protei 97.7 0.00011 3.8E-09 73.0 9.6 118 148-268 15-134 (477)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00057 2E-08 67.5 14.4 124 139-264 268-405 (457)
179 1wao_1 Serine/threonine protei 97.7 0.00076 2.6E-08 67.0 15.3 121 215-338 12-134 (477)
180 2xev_A YBGF; tetratricopeptide 97.7 0.0013 4.6E-08 51.6 14.0 90 147-237 10-104 (129)
181 2xev_A YBGF; tetratricopeptide 97.6 0.0017 5.7E-08 51.0 13.9 93 179-273 7-105 (129)
182 3k9i_A BH0479 protein; putativ 97.6 0.00012 4.2E-09 56.9 6.2 85 116-202 3-89 (117)
183 3k9i_A BH0479 protein; putativ 97.5 0.00022 7.6E-09 55.4 7.6 105 151-256 2-109 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0009 3.1E-08 66.1 13.7 125 173-299 267-405 (457)
185 1ihg_A Cyclophilin 40; ppiase 97.5 0.0011 3.8E-08 63.3 13.4 122 140-263 224-360 (370)
186 1ihg_A Cyclophilin 40; ppiase 97.5 0.0012 4.2E-08 63.0 13.3 139 175-335 224-362 (370)
187 3rkv_A Putative peptidylprolyl 97.4 0.0018 6.3E-08 53.4 12.3 97 176-273 13-126 (162)
188 1dce_A Protein (RAB geranylger 97.4 0.02 6.8E-07 57.9 21.4 185 154-363 44-241 (567)
189 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00055 1.9E-08 64.6 9.1 146 140-307 180-327 (338)
190 3rkv_A Putative peptidylprolyl 97.3 0.0022 7.5E-08 52.9 11.6 115 279-419 11-131 (162)
191 3n71_A Histone lysine methyltr 97.3 0.00091 3.1E-08 66.2 10.2 132 253-411 318-463 (490)
192 1dce_A Protein (RAB geranylger 97.3 0.013 4.3E-07 59.4 18.8 140 113-257 38-191 (567)
193 1klx_A Cysteine rich protein B 97.3 0.0097 3.3E-07 47.6 14.7 110 189-309 10-127 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00075 2.6E-08 63.7 9.0 151 174-345 179-330 (338)
195 1klx_A Cysteine rich protein B 97.3 0.0079 2.7E-07 48.1 13.9 112 153-275 9-128 (138)
196 3n71_A Histone lysine methyltr 97.3 0.00094 3.2E-08 66.1 9.9 122 186-307 321-463 (490)
197 2hr2_A Hypothetical protein; a 97.2 0.0045 1.5E-07 50.5 11.9 95 177-271 14-129 (159)
198 2hr2_A Hypothetical protein; a 97.2 0.0058 2E-07 49.8 11.7 96 142-237 14-130 (159)
199 2kat_A Uncharacterized protein 97.1 0.0077 2.6E-07 46.1 11.4 79 121-202 3-81 (115)
200 2l6j_A TPR repeat-containing p 97.1 0.00086 2.9E-08 51.0 5.7 26 211-236 40-65 (111)
201 2kat_A Uncharacterized protein 97.1 0.0036 1.2E-07 48.1 9.4 63 208-271 18-80 (115)
202 1zu2_A Mitochondrial import re 97.0 0.0022 7.7E-08 52.2 8.0 99 327-428 15-134 (158)
203 1na3_A Designed protein CTPR2; 97.0 0.0086 2.9E-07 43.3 10.5 22 144-165 14-35 (91)
204 1na3_A Designed protein CTPR2; 96.9 0.0097 3.3E-07 43.0 10.6 82 174-257 9-90 (91)
205 2l6j_A TPR repeat-containing p 96.9 0.0047 1.6E-07 46.7 9.1 65 208-273 3-67 (111)
206 3mkq_A Coatomer beta'-subunit; 96.6 0.065 2.2E-06 56.8 18.2 149 149-336 609-758 (814)
207 3ma5_A Tetratricopeptide repea 96.5 0.018 6E-07 42.9 9.1 63 138-201 6-68 (100)
208 3ma5_A Tetratricopeptide repea 96.5 0.019 6.7E-07 42.7 9.2 62 244-306 7-68 (100)
209 1zu2_A Mitochondrial import re 96.4 0.0095 3.3E-07 48.5 7.4 85 152-238 15-120 (158)
210 3mkq_A Coatomer beta'-subunit; 95.9 0.1 3.4E-06 55.3 14.7 46 149-200 662-707 (814)
211 3ly7_A Transcriptional activat 95.8 0.17 5.7E-06 47.4 13.8 73 241-317 274-346 (372)
212 3qww_A SET and MYND domain-con 95.7 0.061 2.1E-06 52.1 10.8 85 223-307 312-410 (433)
213 3ly7_A Transcriptional activat 95.6 0.21 7.2E-06 46.7 13.6 73 206-282 274-346 (372)
214 3qwp_A SET and MYND domain-con 95.6 0.045 1.5E-06 53.2 9.3 86 221-306 299-398 (429)
215 3qwp_A SET and MYND domain-con 95.4 0.1 3.4E-06 50.6 11.3 98 286-410 294-398 (429)
216 3qww_A SET and MYND domain-con 95.4 0.063 2.2E-06 52.1 9.7 85 258-342 312-410 (433)
217 2kc7_A BFR218_protein; tetratr 95.2 0.063 2.2E-06 39.4 7.3 55 148-203 9-64 (99)
218 2kc7_A BFR218_protein; tetratr 94.9 0.069 2.3E-06 39.2 6.7 51 360-411 12-63 (99)
219 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.8E-05 36.9 13.9 102 147-269 13-114 (177)
220 3mkq_B Coatomer subunit alpha; 94.3 1.6 5.6E-05 35.9 13.8 100 183-303 14-113 (177)
221 1pc2_A Mitochondria fission pr 94.1 0.36 1.2E-05 38.8 9.3 78 158-237 17-99 (152)
222 3bee_A Putative YFRE protein; 93.9 0.51 1.8E-05 34.3 9.3 17 219-235 53-69 (93)
223 3bee_A Putative YFRE protein; 93.8 0.53 1.8E-05 34.2 9.3 66 137-203 4-72 (93)
224 1wy6_A Hypothetical protein ST 93.5 2.1 7.2E-05 33.3 16.2 139 151-311 19-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 92.7 0.49 1.7E-05 35.2 7.8 66 103-168 5-75 (104)
226 1pc2_A Mitochondria fission pr 92.7 2 6.8E-05 34.4 11.5 81 226-308 15-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 92.6 1.2 4E-05 33.0 9.9 64 174-237 5-74 (104)
228 1wy6_A Hypothetical protein ST 92.6 3 0.0001 32.5 12.4 141 113-276 17-157 (172)
229 3u64_A Protein TP_0956; tetrat 92.5 1.1 3.6E-05 40.3 10.7 93 155-249 179-282 (301)
230 3u64_A Protein TP_0956; tetrat 92.4 0.69 2.4E-05 41.5 9.4 93 121-216 181-284 (301)
231 4h7y_A Dual specificity protei 91.9 0.93 3.2E-05 36.0 8.4 104 101-207 11-127 (161)
232 4h7y_A Dual specificity protei 90.4 3.4 0.00012 32.9 10.3 103 242-346 11-126 (161)
233 2ff4_A Probable regulatory pro 89.1 1.8 6.2E-05 41.1 9.7 71 176-247 173-248 (388)
234 3lvg_A Clathrin heavy chain 1; 88.8 0.016 5.6E-07 55.6 -4.6 147 347-508 53-219 (624)
235 2ff4_A Probable regulatory pro 88.6 1.8 6.1E-05 41.2 9.3 67 213-280 175-246 (388)
236 4b4t_P 26S proteasome regulato 87.9 20 0.00069 34.5 16.8 228 100-327 53-306 (445)
237 1nzn_A CGI-135 protein, fissio 87.8 2.4 8E-05 32.7 7.6 21 217-237 82-102 (126)
238 4gns_B Protein CSD3, chitin bi 86.8 6.3 0.00021 40.8 12.5 125 143-270 252-397 (754)
239 4b4t_P 26S proteasome regulato 86.2 25 0.00085 33.9 20.4 163 248-410 141-322 (445)
240 4ady_A RPN2, 26S proteasome re 84.1 47 0.0016 35.3 20.7 293 108-411 344-657 (963)
241 4fhn_B Nucleoporin NUP120; pro 83.9 31 0.0011 37.9 17.2 149 179-335 817-992 (1139)
242 1nzn_A CGI-135 protein, fissio 82.3 12 0.00041 28.7 9.3 83 224-308 16-103 (126)
243 1v54_E Cytochrome C oxidase po 81.9 7.7 0.00026 28.3 7.5 44 193-236 29-72 (109)
244 1v54_E Cytochrome C oxidase po 81.6 13 0.00045 27.1 8.8 48 259-306 25-72 (109)
245 4gns_B Protein CSD3, chitin bi 80.0 17 0.00057 37.7 12.3 46 456-503 616-661 (754)
246 4fhn_B Nucleoporin NUP120; pro 76.3 79 0.0027 34.7 17.2 87 211-299 901-991 (1139)
247 2uwj_G Type III export protein 75.3 20 0.00069 26.0 7.9 77 190-274 22-98 (115)
248 2p58_C Putative type III secre 75.1 21 0.00073 25.9 8.8 78 189-274 22-99 (116)
249 2y69_E Cytochrome C oxidase su 72.9 17 0.00058 28.2 7.5 40 197-236 76-115 (152)
250 4ady_A RPN2, 26S proteasome re 72.1 1.1E+02 0.0036 32.6 24.3 297 140-445 340-656 (963)
251 3lvg_A Clathrin heavy chain 1; 71.9 1.1 3.7E-05 43.4 0.9 113 383-510 54-166 (624)
252 2y69_E Cytochrome C oxidase su 71.8 33 0.0011 26.6 9.0 59 157-216 71-129 (152)
253 3o48_A Mitochondria fission 1 71.3 19 0.00066 27.8 7.6 24 179-202 83-106 (134)
254 3txn_A 26S proteasome regulato 68.8 78 0.0027 29.8 20.5 166 105-271 21-208 (394)
255 1k1a_A B-cell lymphoma 3-encod 68.3 7.3 0.00025 33.4 5.6 22 148-169 15-36 (241)
256 1zbp_A Hypothetical protein VP 67.9 50 0.0017 29.1 10.5 55 253-308 6-60 (273)
257 2p58_C Putative type III secre 67.6 33 0.0011 25.0 7.8 49 148-202 49-97 (116)
258 3eiq_C Programmed cell death p 65.8 48 0.0017 30.7 10.6 94 247-341 220-319 (358)
259 1y8m_A FIS1; mitochondria, unk 65.5 47 0.0016 26.0 10.0 23 216-238 84-106 (144)
260 2uwj_G Type III export protein 65.1 31 0.0011 25.1 7.0 49 185-239 50-98 (115)
261 1wdy_A 2-5A-dependent ribonucl 64.7 7.2 0.00025 34.4 4.9 22 396-417 192-213 (285)
262 4b4t_R RPN7, 26S proteasome re 62.1 56 0.0019 31.2 10.9 95 176-272 133-236 (429)
263 4b4t_R RPN7, 26S proteasome re 61.6 56 0.0019 31.2 10.8 96 211-308 133-237 (429)
264 4g8k_A 2-5A-dependent ribonucl 59.9 34 0.0012 31.1 8.8 57 107-172 26-85 (337)
265 3ffl_A Anaphase-promoting comp 59.2 52 0.0018 26.5 8.3 22 215-236 128-149 (167)
266 2zu6_B Programmed cell death p 58.0 90 0.0031 28.2 10.8 73 248-321 170-244 (307)
267 3eiq_C Programmed cell death p 57.4 1E+02 0.0035 28.5 11.2 25 142-166 57-81 (358)
268 3ffl_A Anaphase-promoting comp 56.5 50 0.0017 26.6 7.8 95 108-202 25-150 (167)
269 3o48_A Mitochondria fission 1 55.3 70 0.0024 24.7 9.6 67 172-238 38-107 (134)
270 2nsz_A Programmed cell death p 55.1 69 0.0023 24.5 8.3 64 248-312 11-76 (129)
271 1k1a_A B-cell lymphoma 3-encod 54.8 20 0.0007 30.5 6.0 29 109-138 12-40 (241)
272 1wdy_A 2-5A-dependent ribonucl 54.1 49 0.0017 28.7 8.6 19 459-477 222-240 (285)
273 3t8k_A Uncharacterized protein 53.4 21 0.00072 29.4 5.5 21 289-309 161-181 (186)
274 2d2s_A Exocyst complex compone 51.6 1.2E+02 0.004 26.1 10.7 88 181-271 25-118 (235)
275 3kea_A K1L; tropism, ANK repea 50.7 18 0.0006 32.3 5.0 13 370-382 210-222 (285)
276 1zbp_A Hypothetical protein VP 49.9 70 0.0024 28.2 8.3 54 219-273 7-60 (273)
277 3eu9_A Huntingtin-interacting 48.1 6.8 0.00023 33.5 1.7 7 151-157 18-24 (240)
278 3esl_A Checkpoint serine/threo 47.9 1.2E+02 0.0042 25.3 10.3 56 258-313 93-149 (202)
279 2ion_A PDCD4, programmed cell 47.5 59 0.002 25.8 6.9 24 248-271 13-36 (152)
280 3ltj_A Alpharep-4; protein eng 46.4 1.2E+02 0.004 24.7 20.4 153 101-271 26-178 (201)
281 3ltm_A Alpha-REP4; protein eng 45.9 1.2E+02 0.0043 24.8 19.6 155 136-307 30-184 (211)
282 3kea_A K1L; tropism, ANK repea 44.7 14 0.00049 32.9 3.3 182 110-314 35-223 (285)
283 3hra_A Ankyrin repeat family p 43.8 32 0.0011 28.2 5.3 96 217-313 77-172 (201)
284 3aji_A 26S proteasome non-ATPa 43.6 27 0.00093 29.5 4.9 17 147-163 11-27 (231)
285 3eu9_A Huntingtin-interacting 42.8 46 0.0016 28.0 6.3 22 460-481 214-235 (240)
286 1y8m_A FIS1; mitochondria, unk 42.8 1.2E+02 0.0041 23.7 12.0 67 207-273 37-106 (144)
287 2ion_A PDCD4, programmed cell 42.6 1.2E+02 0.0042 23.9 8.9 61 142-206 12-77 (152)
288 3t8k_A Uncharacterized protein 42.3 47 0.0016 27.2 6.0 9 161-169 57-65 (186)
289 2zu6_B Programmed cell death p 42.2 53 0.0018 29.7 6.6 63 352-415 170-234 (307)
290 4a1g_A Mitotic checkpoint seri 40.8 80 0.0027 25.0 6.6 54 365-418 82-136 (152)
291 3ltm_A Alpha-REP4; protein eng 39.4 1.6E+02 0.0054 24.2 19.5 172 101-293 31-202 (211)
292 2wvi_A Mitotic checkpoint seri 38.8 96 0.0033 24.9 6.9 55 365-419 77-132 (164)
293 2fe3_A Peroxide operon regulat 38.3 1.1E+02 0.0039 23.7 7.3 60 270-330 13-72 (145)
294 1n11_A Ankyrin; clathrin, BAND 37.0 38 0.0013 32.2 5.2 19 145-163 50-68 (437)
295 3jxi_A Vanilloid receptor-rela 36.6 11 0.00039 32.8 1.3 56 110-166 9-73 (260)
296 3b7b_A Euchromatic histone-lys 35.4 13 0.00045 31.7 1.5 10 147-156 16-25 (237)
297 3lpz_A GET4 (YOR164C homolog); 35.3 2.6E+02 0.0089 25.5 21.3 79 382-479 135-213 (336)
298 3l6a_A Eukaryotic translation 35.3 2.3E+02 0.0078 26.2 9.9 23 107-129 16-38 (364)
299 2fu4_A Ferric uptake regulatio 35.2 97 0.0033 21.0 5.9 60 270-330 8-68 (83)
300 1mzb_A Ferric uptake regulatio 33.7 97 0.0033 23.8 6.2 60 270-330 9-69 (136)
301 4g8k_A 2-5A-dependent ribonucl 33.5 1.2E+02 0.0042 27.2 8.0 39 368-406 219-259 (337)
302 3hra_A Ankyrin repeat family p 33.4 19 0.00064 29.7 2.1 10 370-379 160-169 (201)
303 2nsz_A Programmed cell death p 32.8 1.6E+02 0.0055 22.4 10.2 61 142-206 10-75 (129)
304 2xig_A Ferric uptake regulatio 32.5 1.8E+02 0.0061 22.7 8.1 62 268-330 16-77 (150)
305 2wpv_A GET4, UPF0363 protein Y 31.8 2.9E+02 0.0098 24.9 20.4 25 278-302 133-157 (312)
306 3esl_A Checkpoint serine/threo 31.6 2.3E+02 0.0077 23.7 10.1 55 153-207 93-148 (202)
307 3eyy_A Putative iron uptake re 30.8 1.1E+02 0.0038 23.8 6.1 59 270-330 10-68 (145)
308 2fe3_A Peroxide operon regulat 30.6 1.4E+02 0.0049 23.1 6.8 64 232-296 10-73 (145)
309 2etb_A Transient receptor pote 30.4 30 0.001 29.9 3.0 57 109-167 5-71 (256)
310 3utm_A Tankyrase-1; tankyrase, 30.3 1.8E+02 0.0061 26.0 8.6 50 109-162 27-78 (351)
311 2w57_A Ferric uptake regulatio 30.0 1.1E+02 0.0037 24.1 5.9 60 270-330 8-68 (150)
312 1ug3_A EIF4GI, eukaryotic prot 29.3 3.3E+02 0.011 24.8 10.4 25 142-166 14-38 (339)
313 2yru_A Steroid receptor RNA ac 29.2 88 0.003 23.5 4.9 42 266-307 48-89 (118)
314 1mzb_A Ferric uptake regulatio 28.7 1.5E+02 0.0052 22.6 6.6 63 233-296 7-70 (136)
315 2rfa_A Transient receptor pote 28.3 50 0.0017 27.8 4.0 20 145-164 40-59 (232)
316 2wpv_A GET4, UPF0363 protein Y 27.4 3.4E+02 0.012 24.4 18.8 110 144-268 38-158 (312)
317 3txn_A 26S proteasome regulato 27.3 3.9E+02 0.013 25.0 23.8 38 380-419 253-290 (394)
318 4a1g_A Mitotic checkpoint seri 27.1 2.3E+02 0.0079 22.3 9.4 53 261-313 82-135 (152)
319 2xig_A Ferric uptake regulatio 27.1 2.2E+02 0.0076 22.2 7.3 63 233-296 16-78 (150)
320 3jxi_A Vanilloid receptor-rela 26.9 5.9 0.0002 34.7 -2.4 56 181-236 9-73 (260)
321 2fu4_A Ferric uptake regulatio 26.0 1.5E+02 0.0053 20.0 6.8 62 233-295 6-68 (83)
322 3l6a_A Eukaryotic translation 25.9 3.7E+02 0.012 24.8 9.6 61 176-241 14-80 (364)
323 3lpz_A GET4 (YOR164C homolog); 25.4 3.9E+02 0.013 24.3 20.9 26 312-337 134-159 (336)
324 1n11_A Ankyrin; clathrin, BAND 25.3 1.2E+02 0.0041 28.5 6.6 110 145-267 17-133 (437)
325 3twr_A Tankyrase-2; ankyrin re 24.0 81 0.0028 24.6 4.3 11 151-161 17-27 (165)
326 2b7e_A PRE-mRNA processing pro 23.9 44 0.0015 21.5 2.0 32 469-501 2-35 (59)
327 2ijq_A Hypothetical protein; s 23.8 2.8E+02 0.0095 22.1 8.4 51 152-202 45-103 (161)
328 3aji_A 26S proteasome non-ATPa 23.5 57 0.0019 27.4 3.5 19 109-127 9-27 (231)
329 1ug3_A EIF4GI, eukaryotic prot 23.5 2.7E+02 0.0094 25.3 8.3 25 212-236 14-38 (339)
330 2dod_A Transcription elongatio 23.1 54 0.0019 22.8 2.5 32 469-501 16-48 (82)
331 4aez_C MAD3, mitotic spindle c 23.0 2.4E+02 0.0081 24.0 6.9 50 263-312 133-183 (223)
332 2yru_A Steroid receptor RNA ac 22.7 1.6E+02 0.0054 22.1 5.3 43 231-273 48-90 (118)
333 2o03_A Probable zinc uptake re 22.6 1.1E+02 0.0036 23.4 4.5 47 284-330 15-61 (131)
334 3eyy_A Putative iron uptake re 22.4 1.9E+02 0.0064 22.5 6.0 63 232-296 7-69 (145)
335 1n00_A Annexin GH1; membrane-b 22.4 4.3E+02 0.015 23.8 13.4 35 177-213 78-112 (321)
336 1yii_A Annexin A5, annexin V, 22.4 4.3E+02 0.015 23.8 17.7 41 401-444 250-290 (320)
337 2w57_A Ferric uptake regulatio 21.9 1.8E+02 0.0063 22.7 5.9 64 232-296 5-69 (150)
338 2pnn_A Transient receptor pote 21.9 57 0.002 28.4 3.2 57 109-166 16-81 (273)
339 3utm_A Tankyrase-1; tankyrase, 21.9 3.2E+02 0.011 24.2 8.6 113 214-336 26-143 (351)
340 3ltj_A Alpharep-4; protein eng 21.7 3.2E+02 0.011 22.0 20.5 154 137-307 26-179 (201)
341 2etb_A Transient receptor pote 21.2 1.2E+02 0.0041 25.8 5.2 27 251-277 6-32 (256)
342 2d2s_A Exocyst complex compone 21.1 3.9E+02 0.013 22.8 14.9 88 215-305 24-117 (235)
343 3ljn_A Hypothetical protein; a 20.9 1E+02 0.0036 28.1 5.0 218 178-408 21-266 (364)
344 2r9g_A AAA ATPase, central reg 20.7 3.7E+02 0.013 22.4 9.3 53 187-240 27-84 (204)
345 2wvi_A Mitotic checkpoint seri 20.4 3.3E+02 0.011 21.7 9.8 55 261-315 77-132 (164)
346 2pnn_A Transient receptor pote 20.0 26 0.00089 30.7 0.5 54 182-235 18-80 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-38 Score=327.17 Aligned_cols=443 Identities=8% Similarity=-0.075 Sum_probs=368.6
Q ss_pred cccccccCCCcccccc-----chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCC
Q 010459 44 PISCCCLSSAPSLDYH-----STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR 118 (510)
Q Consensus 44 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 118 (510)
+.+++....+... |. +...|+.++.+|.+.|.+.+++..+. .++. ..|+..++..++.+|.+.|+
T Consensus 63 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~--~~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 63 TSTDGSFLKERNA-QNTDSLSREDYLRLWRHDALMQQQYKCAAFVGE-------KVLD--ITGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHH--HHCCHHHHHHHHHHHHHTTC
T ss_pred ccccCccCCCCCc-cccchHHHHHHHHHHHHHHHHccCchHHHHHHH-------HHHh--hCCCchHHHHHHHHHHHcCc
Confidence 3445544444433 32 34568999999999999999999998 5553 34677899999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhC--------------CCCCCHHHHHHHHHH
Q 010459 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGF--------------ALKPSLEIYNSIIHG 183 (510)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--------------g~~~~~~~~~~li~~ 183 (510)
+++|.++|+.+. ..+++..+++.++.+|.+.|++++|+++|+++ +.. |..++..+|+.++.+
T Consensus 133 ~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (597)
T 2xpi_A 133 YARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209 (597)
T ss_dssp HHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence 999999999774 34789999999999999999999999999953 222 223468999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------------------HHHHHHHHccCCH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTY--------------------------------------DGLIQAYGKYKMY 225 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------------------------------------~~li~~~~~~g~~ 225 (510)
|.+.|++++|+++|++|.+.+.. +..++ +.++..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 99999999999999999886532 33333 3336667788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 305 (510)
++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++.+
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999865 589999999999999999999999999999976533 6788999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHH
Q 010459 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT 385 (510)
Q Consensus 306 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 385 (510)
.+.. +.+..+++.+..+|.+.|++++|.+.+..+....+.+..+|+.++.+|...|+.++|.++|+++.+.+.. +..+
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 443 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLP 443 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHH
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHH
Confidence 8654 5678899999999999999999999999998888889999999999999999999999999999987554 7899
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc----ccccc--ccChhHH
Q 010459 386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL----FKTVE--INTDPLV 459 (510)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 459 (510)
|+.++.+|.+.|++++|.++|+++.+.. ..+..+|..+...+.+.|++++|+++++++... +..|+ ...+..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999998642 236889999999999999999999999998443 23344 5678889
Q ss_pred HHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459 460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 507 (510)
..+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+++.|
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999988742 33678999999999999998765
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-36 Score=312.87 Aligned_cols=447 Identities=9% Similarity=-0.016 Sum_probs=380.5
Q ss_pred chHHHHHHhhhccccccccCCCcccccc-------chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChh
Q 010459 32 DRVFFAKTLIRKPISCCCLSSAPSLDYH-------STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKD 104 (510)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (510)
+.+...+.+++.|.+.|....+... |. +...+..+...|...|.+.+++..+.... . ..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFV-GEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-------L--YNRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-------G--GGTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHH-HHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-------c--cccchh
Confidence 4566677899999999988877765 43 33567888999999999999999888432 1 256788
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIE--------------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL 170 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 170 (510)
+++.++.+|.+.|++++|.++|+.+.... +.+++..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999998432111 2244689999999999999999999999999987642
Q ss_pred CCCHHHHHH--------------------------------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010459 171 KPSLEIYNS--------------------------------------IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212 (510)
Q Consensus 171 ~~~~~~~~~--------------------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 212 (510)
. +...|.. ++..|.+.|++++|.++|++|.+. .++..+|
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 2 3444333 356677889999999999999765 5799999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 292 (510)
+.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 999999999999999999999999776 4588899999999999999999999999998653 34788999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHH
Q 010459 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372 (510)
Q Consensus 293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 372 (510)
|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.+.++.+....+.+..+|+.++.+|...|+.++|.++|+
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998754 44688999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhC----CCCCC--HHHHHHHHHhhhhcCccchHHHHHHHcCC
Q 010459 373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR----HVKPD--IVTIGILYDARRIGFDGTGALEMWKRIGF 446 (510)
Q Consensus 373 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 446 (510)
++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+.++++..
T Consensus 466 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99987554 7899999999999999999999999999865 77898 78999999999999999999999999854
Q ss_pred ccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHH
Q 010459 447 LFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLV 498 (510)
Q Consensus 447 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 498 (510)
.. +.+...+..+...|.+.|++++|.+.|+++.+ ..|+. ..|..+...|
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 43 33567788899999999999999999999987 45553 4555555444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.6e-34 Score=287.91 Aligned_cols=207 Identities=16% Similarity=0.127 Sum_probs=176.8
Q ss_pred cHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 010459 121 QIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---------F 190 (510)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 190 (510)
.+..+.+.+.+ .+..+. ..+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34445555655 555443 346888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 191 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 271 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 328 (510)
.+.|+.||..||++||++|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999987753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2e-33 Score=281.40 Aligned_cols=198 Identities=9% Similarity=0.064 Sum_probs=183.4
Q ss_pred hhhccCCCChh-hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHH
Q 010459 94 ILQHDGDWTKD-HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL---------MEEAVRAFQ 163 (510)
Q Consensus 94 ~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~ 163 (510)
+.+++..+++. .++.+|++|++.|++++|.++|+.|.+ .|+.||..+||+||.+|++.+. +++|.++|+
T Consensus 16 ~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 16 AKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp --------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 33444444443 588999999999999999999999998 8999999999999999998764 789999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010459 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243 (510)
Q Consensus 164 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 243 (510)
+|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292 (510)
Q Consensus 244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 292 (510)
..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999874
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2e-25 Score=218.73 Aligned_cols=381 Identities=9% Similarity=-0.058 Sum_probs=325.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 188 (510)
+...+.+.|++++|.+.+..+.+ ..+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34567789999999999998875 234456677788889999999999999999888764 457889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
++++|.+.|+++.+.. | +..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 82 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999998753 4 56689999999999999999999999998764 335667778888899999999999999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
+++.+.... +..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+.......+.+
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 999876422 57899999999999999999999999999865 4467788999999999999999999999999888999
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459 348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA 427 (510)
Q Consensus 348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 427 (510)
..+|..+...+...|+.++|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+.. .++..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 999999999999999999999999999987654 67889999999999999999999999998752 4467889999999
Q ss_pred hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcC
Q 010459 428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHN 502 (510)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 502 (510)
+...|++++|++.++++.... +.....+..+...|.+.|++++|.+.|+++.+ ..|+ ...|..+-..+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999986542 23445677888899999999999999999987 4554 346666666666655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.6e-24 Score=207.38 Aligned_cols=361 Identities=10% Similarity=-0.001 Sum_probs=310.9
Q ss_pred HHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 010459 69 ESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM 148 (510)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 148 (510)
..+.+.|++++++..+. ..++.. +.++..+..+...+.+.|++++|...++...+ ..+.+..+|..+...
T Consensus 7 ~~~~~~g~~~~A~~~~~-------~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCM-------QLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHTCHHHHHHHHH-------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH-------HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence 44567788888888776 444332 22345666777888999999999999998874 456788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
|.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +..++..+...+.+.|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999998763 335678999999999999999999999999886422 456778888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+.. +...|..+...+...|++++|...+.+..+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998764 446889999999999999999999999999986432 5778899999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI 388 (510)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 388 (510)
. +.+..++..+...|.+.|++++|...+.......+.+..+|..+...+...|+.++|.+.|+++.+..+ .+..+|+.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 310 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNN 310 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHH
Confidence 4 345788999999999999999999999999999888999999999999999999999999999998754 37899999
Q ss_pred HHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459 389 ILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
+...+.+.|++++|...|+++.+. .| +..++..+...+.+.|++++|++.++++...
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999874 35 4678899999999999999999999998543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.2e-21 Score=193.67 Aligned_cols=301 Identities=12% Similarity=-0.014 Sum_probs=167.7
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
++..+..+...+.+.|++++|.++|+.+.+ ..+.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 334555666666666666666666666653 233456666666666666666666666666666553 22456666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHH------------HHccCCHHHHHHHHHHHHhCCCCCCHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMNLSPQ-S---DTYDGLIQA------------YGKYKMYDEIDMCLKMMKLDGCSPDHI 245 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~t~~~li~~------------~~~~g~~~~a~~~~~~m~~~g~~~~~~ 245 (510)
..|.+.|++++|.+.|+++.+.. |+ . .++..+... +.+.|++++|...|+++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 66666666666666666666532 32 2 455555333 556666666666666665543 33556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH-----
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL----- 320 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----- 320 (510)
.+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.++.+.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 66666666666666666666666665442 1245566666666666666666666666665432 1222333322
Q ss_pred -------HHHHHhhcchhHHHHHHHHHHhhcCCch----HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHH
Q 010459 321 -------AEVYIKNYMFSRLDDLGDDLASRIGRTE----LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII 389 (510)
Q Consensus 321 -------i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 389 (510)
...|.+.|++++|...+.......+.+. ..|..+...+...|+.++|.+.++++.+..+. +..+|..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 4445555555555555555444433332 23444445555555555555555554443211 34455555
Q ss_pred HHHHHcCCChhHHHHHHHhhhh
Q 010459 390 LLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~ 411 (510)
..+|.+.|++++|...|++..+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.3e-20 Score=188.08 Aligned_cols=364 Identities=10% Similarity=-0.032 Sum_probs=297.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214 (510)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 214 (510)
.+.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.+.. +..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 35567889999999999999999999999998763 457899999999999999999999999999887533 6889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHCCCccCH
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDH---ITYNLLIQE------------FACAGLLKRMEGTYKSMLTKRMHLRS 279 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~ 279 (510)
+...|.+.|++++|...|+++.+.. +.+. ..|..++.. +.+.|++++|...|+++.+... .+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 9999999999999999999999764 2334 666666444 8999999999999999987643 377
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH-----
Q 010459 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR----- 354 (510)
Q Consensus 280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----- 354 (510)
.++..+..+|...|++++|.++++.+.+.. +.+..++..+...|.+.|++++|...+..+....+.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 889999999999999999999999998764 45688999999999999999999999999998888888888776
Q ss_pred -------HHHhhhhcccccHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHH
Q 010459 355 -------LLSHACLLSHRGIDSVVREMESAKVRWN----VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIG 422 (510)
Q Consensus 355 -------i~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 422 (510)
...+...|+.++|.+.|+++.+.... + ...|..+...+.+.|++++|...++++.+. .| +...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 88899999999999999999885432 2 457888999999999999999999999864 35 578899
Q ss_pred HHHHhhhhcCccchHHHHHHHcCCccccccccChhHHH------------HHhhccC-----chhHHHHHHhhcCCCCCC
Q 010459 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL------------AVYGKGH-----FLRYCEEVYSSLEPYSRE 485 (510)
Q Consensus 423 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li------------~~~~~~g-----~~~~A~~~~~~m~~~g~~ 485 (510)
.+..+|...|++++|.+.++++....+ .+...+..+. +.|...| +.+++.+.++++... ..
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~ 411 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WH 411 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hC
Confidence 999999999999999999999855322 1222333333 2344445 667778888753211 23
Q ss_pred CC-----------cccHHHHHHHHHhcCCCCCCC
Q 010459 486 KK-----------RWTYQNLIDLVIKHNGKNLDG 508 (510)
Q Consensus 486 p~-----------~~~~~~li~~~~~~g~~~~a~ 508 (510)
|| ...|..+..+|..-|+.+++.
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33 237788999999999887764
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.7e-21 Score=194.44 Aligned_cols=368 Identities=6% Similarity=-0.093 Sum_probs=298.3
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.+......+.+.|++++|.+.|+.+.+. .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..+|..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 5667778889999999999999999873 3799999999999999999999999999998875 34678999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---------------------------------------------------------
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSP--------------------------------------------------------- 207 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p--------------------------------------------------------- 207 (510)
.+.|++++|...|+++...+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999987765210
Q ss_pred ---------------------CHHHHHHHHHHHH---ccCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 010459 208 ---------------------QSDTYDGLIQAYG---KYKMYDEIDMCLKMMKL-----DGC--------SPDHITYNLL 250 (510)
Q Consensus 208 ---------------------~~~t~~~li~~~~---~~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 250 (510)
+...+..+...+. +.|++++|...|+++.+ ..- +.+..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1223333333333 37999999999999887 311 2235678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
...+...|++++|...|++..+... +..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 8899999999999999999887653 37788889999999999999999999988764 44667888899999999999
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
++|...+.......+.+...|..+...+...|+.++|.+.|+++.+.... +..+|..+...|.+.|++++|...|+++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999998876443 56788888899999999999999999987
Q ss_pred hCC-CCCC----HHHHHHHHHhhhh---cCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 411 TRH-VKPD----IVTIGILYDARRI---GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 411 ~~g-~~p~----~~t~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
+.. -.|+ ...+..+...+.. .|++++|.+.++++.... +.+...+..+...|.+.|++++|.+.|++..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 531 1122 3377788888888 899999999998874332 22344566677889999999999999998887
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.2e-20 Score=188.27 Aligned_cols=358 Identities=8% Similarity=-0.031 Sum_probs=296.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+-..-..+.+.|++++|+..|+++.+.. |+..+|..+..+|.+.|++++|++.|+++.+.+. .+..+|..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 456667788999999999999999999874 7999999999999999999999999999988653 3678999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC--------------------------------------------------------
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPD-------------------------------------------------------- 243 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~-------------------------------------------------------- 243 (510)
.+.|++++|...|+++.+.+. ++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999876642 11
Q ss_pred -----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------ccCHHHHHH
Q 010459 244 -----------------------HITYNLLIQEFAC---AGLLKRMEGTYKSMLT-----KRM--------HLRSSTMVA 284 (510)
Q Consensus 244 -----------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~ 284 (510)
...+......+.. .|++++|..+|+++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222233333333 7999999999999987 311 223567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 364 (510)
+...+...|++++|.+.++.+.+... +...+..+...|...|++++|...+.......+.+...|..+...+...|+.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 89999999999999999999998753 3888899999999999999999999999998888999999999999999999
Q ss_pred ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
++|...|++..+.... +..++..+...|.+.|++++|..+++++.+.. ..+...+..+...+...|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999987655 67788899999999999999999999998642 224577888888899999999999999987
Q ss_pred CCccccc-c----ccChhHHHHHhhc---cCchhHHHHHHhhcCCCCCCC-CcccHHHHHHHHHhcCCCCCC
Q 010459 445 GFLFKTV-E----INTDPLVLAVYGK---GHFLRYCEEVYSSLEPYSREK-KRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 445 ~~~~~~~-~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 507 (510)
....... . ...+..+...|.+ .|++++|.+.+++..+. .| +...|..+...|.+.|+++.|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHH
Confidence 4332211 1 1256677788889 99999999999998763 33 456788899999999987755
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=9.9e-19 Score=178.44 Aligned_cols=369 Identities=7% Similarity=-0.046 Sum_probs=281.8
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..|......+.+.|++++|.+.|+.+.+ ..+.+...|..+..+|.+.|++++|++.|++..+.+ +.+..+|..+...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4667788889999999999999999885 234578889999999999999999999999998775 3468889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC------------------------------------CCCCHH-----------------
Q 010459 184 YSKIGKFNEALLFLNEMKEMN------------------------------------LSPQSD----------------- 210 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g------------------------------------~~p~~~----------------- 210 (510)
+.+.|++++|++.|+.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999999999999986442111 011111
Q ss_pred -------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHH
Q 010459 211 -------------TYDGLIQAYGK--------YKMYDEIDMCLKMMKLDGCSPD-------HITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 211 -------------t~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~ 262 (510)
....+...+.. .|++++|..+|+++.+.. +.+ ..+|..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11122222221 147888999999888653 222 2346666678888999999
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 342 (510)
|.+.|++..+. .|+..++..+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|...+.....
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999876 4557788888889999999999999999988765 44678889999999999999999999999988
Q ss_pred hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-----CCCC
Q 010459 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-----VKPD 417 (510)
Q Consensus 343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~ 417 (510)
..+.+...|..+...+...|+.++|.+.|++..+.... +...+..+...|.+.|++++|...|+++.+.. ....
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 88888899999999999999999999999998887543 56788888999999999999999999987532 1111
Q ss_pred HHHHHHHHHhhhhc----------CccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 418 IVTIGILYDARRIG----------FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 418 ~~t~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
...+......+... |++++|++.+++..... +.+...+..+...|.+.|++++|.+.|++..+
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12233333455555 89999999999874432 22345566778889999999999999998877
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5e-17 Score=156.37 Aligned_cols=302 Identities=11% Similarity=-0.035 Sum_probs=207.2
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 182 (510)
+..+..+...+...|++++|.+.|+.+.+ ..+.+...+..+...|...|++++|...|++..+.. +.+...|..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34667777888889999999999988875 234467788888888999999999999999888763 236788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGL------------IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 248 (510)
.+.+.|++++|.+.|++..+.... .+...+..+ ...+...|++++|...|+++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999988775320 134444444 467778888888888888887654 45677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH----------
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR---------- 318 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------- 318 (510)
.+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 88888888888888888888887664 3366778888888888888888888888887654 22223222
Q ss_pred --HHHHHHHhhcchhHHHHHHHHHHhhcCCchHH----HHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010459 319 --KLAEVYIKNYMFSRLDDLGDDLASRIGRTELV----WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA 392 (510)
Q Consensus 319 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 392 (510)
.+...+.+.|++++|...+.......+.+... +..+...+...|+.++|.+.+++..+..+. +..+|..+...
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 315 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 12444555666666666655555544444322 223444555555566666666555554222 44555555555
Q ss_pred HHcCCChhHHHHHHHhhhh
Q 010459 393 YLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~ 411 (510)
|.+.|++++|...|++..+
T Consensus 316 ~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 5566666666666655554
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=194.83 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG 214 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 214 (510)
-..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC------HHHHHHHHH
Q 010459 215 LIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR------SSTMVAILD 287 (510)
Q Consensus 215 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~ 287 (510)
||+++++.|+ .++|.++|++|.+.|+.||.++|+.+++++.+.+ +++..+++ ..+..|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999987 4788899999999999999999999887766553 33333333 2334433 344445556
Q ss_pred HHHhcC
Q 010459 288 AYMNFG 293 (510)
Q Consensus 288 ~~~~~g 293 (510)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 665544
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=193.19 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 249 (510)
-..|||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 357999999999999999999999988864 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHH
Q 010459 250 LIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK------EDLVRKLAE 322 (510)
Q Consensus 250 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~ 322 (510)
+|.++++.|+ .++|.++|++|.+.|+.||..||+++++++.+.+-+ +..+++ +.++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 478999999999999999999999999877664332 222222 3345544 445566777
Q ss_pred HHHhhc
Q 010459 323 VYIKNY 328 (510)
Q Consensus 323 ~~~~~~ 328 (510)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.7e-16 Score=152.59 Aligned_cols=211 Identities=10% Similarity=-0.020 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.... +..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45567778888999999999999999988764 346888999999999999999999999998875422 6788899999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLL------------IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 283 (510)
.|.+.|++++|...|++..+.... .+...+..+ ...+...|++++|.+.|+++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876310 244445444 4677888888888888888876542 3567788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352 (510)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (510)
.+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...+.......+.+...|.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence 88888888888888888888887654 446677777888888888888887777776666665555443
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=4.5e-18 Score=173.57 Aligned_cols=360 Identities=11% Similarity=0.023 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 218 (510)
...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|++.|++..+.+. .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3567788889999999999999999999875 34789999999999999999999999999988653 368899999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCC------------------------------------CCCHH-----------------
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGC------------------------------------SPDHI----------------- 245 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~------------------------------------~~~~~----------------- 245 (510)
|.+.|++++|...|+.+....- .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999964421110 01111
Q ss_pred -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCccC-------HHHHHHHHHHHHhcCChhH
Q 010459 246 -------------TYNLLIQEFA--------CAGLLKRMEGTYKSMLTKRMHLR-------SSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 246 -------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~g~~~~ 297 (510)
.+..+...+. ..|++++|..+|+++.+.... + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 124788999999998865322 2 2356677788889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC
Q 010459 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377 (510)
Q Consensus 298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 377 (510)
|.+.+....+.. |+...+..+...|...|++++|...+.......+.+..+|..+...+...|+.++|.+.|++..+.
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999864 558888999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccC--
Q 010459 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT-- 455 (510)
Q Consensus 378 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 455 (510)
... +..+|..+...|.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|++.++++...........
T Consensus 340 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 544 56788899999999999999999999998642 22456788888889999999999999998744322111111
Q ss_pred ---hhHHHHHhhcc----------CchhHHHHHHhhcCCCCCCC-CcccHHHHHHHHHhcCCCCCC
Q 010459 456 ---DPLVLAVYGKG----------HFLRYCEEVYSSLEPYSREK-KRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 456 ---~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 507 (510)
+......|.+. |++++|.+.|++..+. .| +...|..+...|.+.|+++.|
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence 11223456666 9999999999998873 33 456788999999999987755
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.4e-17 Score=153.82 Aligned_cols=292 Identities=11% Similarity=-0.004 Sum_probs=177.8
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
++..+......+...|++++|.++|+.+.+. .+.+...+..++..+.+.|++++|...++++.+.. +.+...|..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4445556666777777777777777777642 23334455556667777777777777777776653 23566777777
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 182 HGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 182 ~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
..+...| ++++|.+.|++..+.... +..+|..+...+...|++++|...|++..+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777665422 45667777777777777777777777776553 23455666677777777777
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 340 (510)
++|.+.|++..+... .+...+..+...+...|++++|.+.++...+..-....
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 228 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-------------------------- 228 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC--------------------------
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc--------------------------
Confidence 777777777765532 24566777777777777777777777766542100000
Q ss_pred HhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHH
Q 010459 341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIV 419 (510)
Q Consensus 341 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 419 (510)
....+.....|..+...+...|+.++|.+.|++..+.... +...|..+...|.+.|++++|.+.|++..+. .| +..
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 305 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTF 305 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchH
Confidence 0000222334444444455555555555555555554332 4556666666666667777777776666643 34 334
Q ss_pred HHHHHHHhh
Q 010459 420 TIGILYDAR 428 (510)
Q Consensus 420 t~~~li~~~ 428 (510)
.+..+..++
T Consensus 306 ~~~~l~~~~ 314 (330)
T 3hym_B 306 SVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-16 Score=151.58 Aligned_cols=296 Identities=9% Similarity=-0.078 Sum_probs=217.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459 134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 213 (510)
+.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|..+++++.+... .+..+|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 345566677778888888899999999999888764 33556677788888888999999999998877543 2567888
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459 214 GLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF 292 (510)
Q Consensus 214 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 292 (510)
.+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 8888888888 8899999998888764 346777888888888899999999998888766432 345666678888888
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHH
Q 010459 293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR 372 (510)
Q Consensus 293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 372 (510)
|++++|.+.++...+.. +.+...+..+...|.+.|++++|... |+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~----------------------------------~~ 217 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW----------------------------------FL 217 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH----------------------------------HH
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH----------------------------------HH
Confidence 88888888888887654 33455666666666666666555555 44
Q ss_pred HHHHCC--------CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 373 EMESAK--------VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 373 ~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+..+.. .+.+..+|..+...|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.+++.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 433321 13346789999999999999999999999998642 225677888888999999999999999998
Q ss_pred CCccccccccChhHHHHHh-hccCchh
Q 010459 445 GFLFKTVEINTDPLVLAVY-GKGHFLR 470 (510)
Q Consensus 445 ~~~~~~~~~~~~~~li~~~-~~~g~~~ 470 (510)
....+ .+...+..+...+ ...|+.+
T Consensus 297 l~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HccCC-CchHHHHHHHHHHHHHhCchh
Confidence 55432 2334455555556 4555543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=4.3e-17 Score=157.78 Aligned_cols=289 Identities=11% Similarity=-0.031 Sum_probs=175.3
Q ss_pred hcCCCCcHHH-HHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010459 115 NSSRSRQIPQ-VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN 191 (510)
Q Consensus 115 ~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (510)
..|++++|.+ .++.........| +...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 4467777776 6664332111112 34456677778888888888888888887764 346777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHH
Q 010459 192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL---------------LIQEFAC 256 (510)
Q Consensus 192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 256 (510)
+|++.|+++.+... .+..++..+...|.+.|++++|...|+++.+... .+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888876542 2677788888888888888888888888776542 22222221 1333346
Q ss_pred cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459 257 AGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD 335 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 335 (510)
.|++++|...|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777654322 145667777777777777777777777766543 3345566666666666666666666
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc----------CHHHHHHHHHHHHcCCChhHHHHH
Q 010459 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW----------NVTTANIILLAYLKMKDFKHLRVL 405 (510)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~A~~~ 405 (510)
.+.......+.+..+|..+...+...|+.++|.+.|++..+..... ...+|..+..+|.+.|+.++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 6655555555555555555555555555555555555554432110 144555555555555555555555
Q ss_pred HH
Q 010459 406 LS 407 (510)
Q Consensus 406 ~~ 407 (510)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.9e-17 Score=156.33 Aligned_cols=289 Identities=8% Similarity=-0.034 Sum_probs=195.1
Q ss_pred HhcCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459 150 CEEGLMEEAVR-AFQEMEGFAL---KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225 (510)
Q Consensus 150 ~~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 225 (510)
.-.|++++|.+ .|++..+... ..+...|..+...+.+.|++++|...|+++.+... .+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7776554321 11356688899999999999999999999988753 3778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH---------------HHHHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA---------------ILDAYM 290 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~~~ 290 (510)
++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999988765 457889999999999999999999999999876432 1112211 233334
Q ss_pred hcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459 291 NFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369 (510)
Q Consensus 291 ~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 369 (510)
..|++++|.+.+..+.+.... ++..++..+...|.+.|++++|...+.......+.+..+|..+...+...|+.++|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777888888888877765421 1466777777777777777777777777666666666677777777777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC---CC-------CHHHHHHHHHhhhhcCccchHHH
Q 010459 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV---KP-------DIVTIGILYDARRIGFDGTGALE 439 (510)
Q Consensus 370 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-------~~~t~~~li~~~~~~~~~~~a~~ 439 (510)
.|++..+..+. +..++..+...|.+.|++++|...|++..+..- .| ...+|..+..++...|+.++|..
T Consensus 273 ~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 77776665332 456666666777777777777777766654210 00 13455555555656666666655
Q ss_pred HHH
Q 010459 440 MWK 442 (510)
Q Consensus 440 ~~~ 442 (510)
+++
T Consensus 352 ~~~ 354 (368)
T 1fch_A 352 ADA 354 (368)
T ss_dssp HHT
T ss_pred hHH
Confidence 544
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=3.9e-17 Score=156.41 Aligned_cols=279 Identities=10% Similarity=0.071 Sum_probs=127.3
Q ss_pred cccccCCCcccccc---chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcH
Q 010459 46 SCCCLSSAPSLDYH---STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI 122 (510)
Q Consensus 46 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 122 (510)
++|++.+|... +. .-..|..+..++.+.+++.+++..|.+ .+|+.+|..+++.+...|++++|
T Consensus 15 ~~~~ld~A~~f-ae~~~~~~vWs~La~A~l~~g~~~eAIdsfik-------------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEF-AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-------------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHH-HHhCCChHHHHHHHHHHHHcCCHHHHHHHHHc-------------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 55556666544 32 224688999999999999999988852 25677888999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
.+.++..++ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 997776653 25567888999999999999999888874 477789999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282 (510)
Q Consensus 203 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 282 (510)
..|..|..++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|+ -.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence 37889999999999999999999988 278899999999999999999965544322 3333 35
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--cchhHHHHHHHHHHhhcC-----CchHHHHHHH
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN--YMFSRLDDLGDDLASRIG-----RTELVWCLRL 355 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~li 355 (510)
..++..|.+.|.+++|..+++...... +-....|+-|--+|++- +.+.+..+.+..-...++ .....|..+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 568888999999999999998887554 44566777777777664 334444444332223333 4567788888
Q ss_pred HHhhhhcccccHHH
Q 010459 356 LSHACLLSHRGIDS 369 (510)
Q Consensus 356 ~~~~~~~~~~~a~~ 369 (510)
..|...++++.|..
T Consensus 290 ~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 290 FLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhhchHHHHHH
Confidence 88888888887754
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.6e-17 Score=155.94 Aligned_cols=268 Identities=10% Similarity=0.055 Sum_probs=139.7
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
+++.+|..+..++.+.|++++|.+.|.. .+|...|..++..+...|++++|+..++...+. .+++.+.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHH
Confidence 3345899999999999999999999963 367889999999999999999999987766654 5668889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|..+++++.+.|++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 999999999999998885 378889999999999999999999999987 3799999999999999
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 340 (510)
++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++++..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988 2789999999999999999999554433 3344555667999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHhhhh--cccccHHHHHHHHHHCCCCc------CHHHHHHHHHHHHcCCChhHHHHHH
Q 010459 341 ASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRW------NVTTANIILLAYLKMKDFKHLRVLL 406 (510)
Q Consensus 341 ~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 406 (510)
.+..+.....|+-+-..|++- ++..+.++.|. .+..++| +...|.-+.-.|.+.++++.|....
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 888888899999988777765 33344444443 1223333 4567888999999999999887743
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.8e-16 Score=151.13 Aligned_cols=262 Identities=10% Similarity=-0.048 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|++.|++..+... .+..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 4444444444455555555554444332 12344444444444445555555555444444321 134444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459 222 YKMYDEIDMCLKMMKLDGCSPD-----------HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY 289 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~ 289 (510)
.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|.+.|+++.+.... ++..++..+...+
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 444444444444444321 11 111222234444444444444444444433211 1334444444444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459 290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS 369 (510)
Q Consensus 290 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 369 (510)
...|++++|.+.+++..+.. +.+..++..+...|.+.|++++|...+.......+.+..+|..+...|...|+.++|.+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 44444444444444444332 22333444444444444444444444333333333333334444444444444444444
Q ss_pred HHHHHHHCCCC-----------cCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459 370 VVREMESAKVR-----------WNVTTANIILLAYLKMKDFKHLRVLLSE 408 (510)
Q Consensus 370 ~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (510)
.|++..+.... .+..+|..+..++...|+.+.+.....+
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 44444332110 0234556666666666666665555443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.4e-16 Score=152.47 Aligned_cols=236 Identities=8% Similarity=-0.015 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+...|..+...+.+.|++++|.+.|+++.+... .+..+|..+...|.+.|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456688999999999999999999999988653 378899999999999999999999999988764 456889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCc-c--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMH-L--------RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAE 322 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~-p--------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~ 322 (510)
.|...|++++|.+.|+++.+.... + ....+..+...+...|++++|.+.++++.+..-. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998865311 0 1123334567788888888888888888875422 25677777888
Q ss_pred HHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHH
Q 010459 323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 402 (510)
.|.+.|++++|...+.......+.+..+|+.+...+...|+.++|.+.|++..+..+. +..+|..+...|.+.|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 8888888877777777776666666666777777777777777777777666665332 456666666666667777777
Q ss_pred HHHHHhhhh
Q 010459 403 RVLLSELPT 411 (510)
Q Consensus 403 ~~~~~~m~~ 411 (510)
...|++..+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.1e-15 Score=145.01 Aligned_cols=266 Identities=9% Similarity=-0.086 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..+......+...|++++|.++|+.+.+ ..+.+...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455566666667777777777766654 223355566666666666777777777776666543 2355666666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL--------------IQ-AYGKYKMYDEIDMCLKMMKLDGCSPDHITYN 248 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 248 (510)
|...|++++|.+.|++..+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 66666666666666666654321 11222222 11 2444455555555555554432 22444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 328 (510)
.+...|...|++++|.+.+++..+... .+..++..+...+...|++++|.+.++.+.+.
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------------- 235 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI-------------------- 235 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------
Confidence 555555555555555555555444321 13344444445555555555555555444433
Q ss_pred chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHcCC
Q 010459 329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-----------NVTTANIILLAYLKMK 397 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g 397 (510)
.+.+..+|..+...+...|+.++|.+.|++..+....+ +..+|..+..++.+.|
T Consensus 236 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 236 ---------------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred ---------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 22233333333344444444444444455444432221 3556666677777777
Q ss_pred ChhHHHHHHHhhh
Q 010459 398 DFKHLRVLLSELP 410 (510)
Q Consensus 398 ~~~~A~~~~~~m~ 410 (510)
+.++|..++++..
T Consensus 301 ~~~~A~~~~~~~l 313 (327)
T 3cv0_A 301 RPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHH
Confidence 7777777666543
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1e-14 Score=148.67 Aligned_cols=394 Identities=5% Similarity=-0.072 Sum_probs=276.2
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
+...|..++. +.+.|++++|+.+|+.+. ...+-+...|..++..+.+.|++++|..+|++..+. .|+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al--~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV--AQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 5568888888 477899999999999997 456667889999999999999999999999999977 57888888887
Q ss_pred HHH-HhcCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHH
Q 010459 182 HGY-SKIGKFNEALL----FLNEMKE-MNLSP-QSDTYDGLIQAYGK---------YKMYDEIDMCLKMMKLDGCSPDHI 245 (510)
Q Consensus 182 ~~~-~~~g~~~~a~~----~~~~m~~-~g~~p-~~~t~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~ 245 (510)
... ...|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|.++|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677776665 7776654 35544 56778887776654 688999999999998731111134
Q ss_pred HHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CccC--------HHHHHHHHHHHHhc---
Q 010459 246 TYNLLIQEF-------------ACAGLLKRMEGTYKSML------TKR---MHLR--------SSTMVAILDAYMNF--- 292 (510)
Q Consensus 246 ~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~--- 292 (510)
.|....... .+.++++.|..++.++. +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 454333211 12356777777776632 111 3443 23455544333221
Q ss_pred -CCh----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------hcchh-------HHHHHHHHHHh-hcCCchHHHH
Q 010459 293 -GML----DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-------NYMFS-------RLDDLGDDLAS-RIGRTELVWC 352 (510)
Q Consensus 293 -g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~~~~ 352 (510)
++. .++..+|++.++.. +.+...+..+...+.+ .|+++ +|..++..... ..+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 36777888887653 4467778777777775 57776 78888888876 5677888999
Q ss_pred HHHHHhhhhcccccHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHh-hh
Q 010459 353 LRLLSHACLLSHRGIDSVVREMESAKVRWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDA-RR 429 (510)
Q Consensus 353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~-~~ 429 (510)
.++..+...|+.++|.++|++..+.... + ...|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHH
Confidence 9999999999999999999999885332 3 357888888888899999999999998864 232 2223222222 33
Q ss_pred hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCC-CCCC--cccHHHHHHHHHhcCCCC
Q 010459 430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYS-REKK--RWTYQNLIDLVIKHNGKN 505 (510)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~ 505 (510)
..|+.++|.++|++..... +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.....+|+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788999999998774332 2344567777788888999999999998887632 2332 236777788777788654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.2e-15 Score=142.99 Aligned_cols=230 Identities=10% Similarity=-0.013 Sum_probs=185.0
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
.+...+..+...+...|++++|.+.++.+.+. .+.+..++..+...|.+.|++++|.+.|++..+.... +...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 129 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVN 129 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 46678888999999999999999999998863 3457788999999999999999999999999977422 33334333
Q ss_pred --------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 010459 181 --------------IH-GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245 (510)
Q Consensus 181 --------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 245 (510)
.. .+...|++++|.+.++++.+.... +..++..+...|.+.|++++|...+++..+.. +.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 207 (327)
T 3cv0_A 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQ 207 (327)
T ss_dssp ----------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHH
Confidence 22 377888999999999999886533 78899999999999999999999999998764 45688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------CH
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-----------KE 314 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~ 314 (510)
+|..+...+...|++++|.+.|++..+... .+..++..+...+...|++++|.+.++...+..... +.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 999999999999999999999999887642 367889999999999999999999999988653221 35
Q ss_pred HHHHHHHHHHHhhcchhHHHHH
Q 010459 315 DLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~ 336 (510)
..+..+..+|.+.|++++|...
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHH
Confidence 5666666666666666666555
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2.2e-15 Score=140.73 Aligned_cols=248 Identities=7% Similarity=-0.061 Sum_probs=140.7
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 190 (510)
....|++..|+...+.+ ....|+. ...-.+..+|...|+++.|+..++.. -.|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~---~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRV---KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHS---CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhc---ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 34456666666665543 2233332 23344566777777777776655432 245566666666777777777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 191 NEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 191 ~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
++|++.++++...+..|+ ...+..+...|.+.|++++|.+.+++ +.+...+..+...|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766654443 33444555666677777777777665 34566666666777777777777777777
Q ss_pred HHHCCCccCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459 270 MLTKRMHLRSSTM---VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346 (510)
Q Consensus 270 m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...++......+.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66553 332111 112233333466666777776666552 445556666666666666666655555555444444
Q ss_pred chHHHHHHHHHhhhhccccc-HHHHHHHHHH
Q 010459 347 TELVWCLRLLSHACLLSHRG-IDSVVREMES 376 (510)
Q Consensus 347 ~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 376 (510)
+..+|..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444444444444432 3344444443
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=8e-13 Score=133.17 Aligned_cols=352 Identities=8% Similarity=-0.097 Sum_probs=263.4
Q ss_pred ChhhHHHHHHHHHh----cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC
Q 010459 102 TKDHFWAVIRFLKN----SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGLMEEAVRAFQEMEGFALKPS 173 (510)
Q Consensus 102 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~ 173 (510)
++..+..+-..|.. .+++++|.+.|+...+ . -+...+..|-..|.. .+++++|.+.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 34455566666666 7888888888888775 3 356677778888888 888999999998888754 6
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHH
Q 010459 174 LEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHI 245 (510)
Q Consensus 174 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~ 245 (510)
...+..|-..|.. .+++++|++.|++..+.| +...+..|-..|.. .++.++|...|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777778888887 788899999998888776 56777778888876 778899999998888754 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 010459 246 TYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLV 317 (510)
Q Consensus 246 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 317 (510)
.+..+-..|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|.++|+...+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 77788888887 788999999998888765 55677777777775 788889999988887765 45566
Q ss_pred HHHHHHHHh----hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh-----cccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459 318 RKLAEVYIK----NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL-----LSHRGIDSVVREMESAKVRWNVTTANI 388 (510)
Q Consensus 318 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ 388 (510)
..|-.+|.. .+++++|...++..... .+...+..+...|... ++.++|.+.|++..+.| +...+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 667777777 77888888887776544 3455666676666665 78888888888888764 4456666
Q ss_pred HHHHHHcCC---ChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCccchHHHHHHHcCCccccccccChhHHHH
Q 010459 389 ILLAYLKMK---DFKHLRVLLSELPTRHVKPDIVTIGILYDARRI----GFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461 (510)
Q Consensus 389 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 461 (510)
+-..|.+.| +.++|.+.|++..+.| +...+..+-..+.. .++.++|++.+++....+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777666 7788888888888764 55566666666665 678888988888874432 2334455556
Q ss_pred Hhhc----cCchhHHHHHHhhcCCCC
Q 010459 462 VYGK----GHFLRYCEEVYSSLEPYS 483 (510)
Q Consensus 462 ~~~~----~g~~~~A~~~~~~m~~~g 483 (510)
.|.+ .++.++|.+.|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6665 788889998888887754
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=8.3e-15 Score=136.75 Aligned_cols=250 Identities=11% Similarity=0.034 Sum_probs=185.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 224 (510)
.-..-.|++..|+..++..... .|+ ....-.+.++|...|+++.|+..++. .-.|+..++..+...+.+.++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3445679999999998876543 333 24556778999999999999987754 245678889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459 225 YDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 225 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
.++|.+.++++...+..| +...+..+-..+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998876545 556666777899999999999999987 3577889999999999999999999999
Q ss_pred HHHhcCCCCCHHHH---HHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459 304 RLLNSRTPLKEDLV---RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380 (510)
Q Consensus 304 ~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 380 (510)
.+.+.. |+.... .+++..+...|++++|..++..+....+.+...|+.+...+...|++++|.+.|++..+..+.
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998864 443211 233344445577777777777766666666666777777777777777777777766665443
Q ss_pred cCHHHHHHHHHHHHcCCChhH-HHHHHHhhhh
Q 010459 381 WNVTTANIILLAYLKMKDFKH-LRVLLSELPT 411 (510)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 411 (510)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666666666666666654 4566666654
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=3.5e-13 Score=137.21 Aligned_cols=406 Identities=9% Similarity=-0.028 Sum_probs=288.9
Q ss_pred chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH
Q 010459 60 STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE 139 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (510)
+...|..++. +.+.+....+...++ ..+.. .+-+...|...+..+.+.|++++|.++|++... ..|+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e-------~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~ 79 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYE-------RLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHI 79 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHH-------HHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHH-------HHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCh
Confidence 3456777776 466778888888777 44332 223556788999999999999999999998864 34788
Q ss_pred HHHHHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHC
Q 010459 140 FNSQKIIGML-CEEGLMEEAVR----AFQEMEG-FALK-PSLEIYNSIIHGYSK---------IGKFNEALLFLNEMKEM 203 (510)
Q Consensus 140 ~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~ 203 (510)
..|..++... ...|+++.|.+ +|+.... .|.. ++...|...+....+ .|++++|..+|++..+.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 8888877533 45677777665 7776654 2443 357788888887655 68899999999999873
Q ss_pred CCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHH
Q 010459 204 NLSPQSDTYDGLIQAY-------------GKYKMYDEIDMCLKMMK------LDG---CSPD--------HITYNLLIQE 253 (510)
Q Consensus 204 g~~p~~~t~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~ 253 (510)
...+....|....... .+.++++.|..++.++. +.. ++|+ ...|...+..
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 2111234444333211 13456777887777632 111 2444 3567766654
Q ss_pred HHHc----CCH----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCC
Q 010459 254 FACA----GLL----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLD-------KMEKFYKRLLNSRTP 311 (510)
Q Consensus 254 ~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~ 311 (510)
.... ++. +.|..+|++..... +-+...|......+.+ .|+++ +|.+++++..+.-.+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 3332 232 47788899888752 2256778888777775 79987 899999998863334
Q ss_pred CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch-HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459 312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE-LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390 (510)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 390 (510)
.+...+..+...+.+.|++++|..++.......+.+. ..|...+..+.+.|+.++|.++|++..+.... +...|....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHH
Confidence 4688899999999999999999999999988777764 68999999999999999999999999886432 233333222
Q ss_pred H-HHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCccc-ccc--ccChhHHHHHhhc
Q 010459 391 L-AYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFLFK-TVE--INTDPLVLAVYGK 465 (510)
Q Consensus 391 ~-~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~ 465 (510)
. .+...|+.++|..+|+...+. .| +...|..++..+.+.|+.++|..++++...... .|. ...|...+....+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 234689999999999998864 35 467888888888999999999999999844321 111 2245555666777
Q ss_pred cCchhHHHHHHhhcCC
Q 010459 466 GHFLRYCEEVYSSLEP 481 (510)
Q Consensus 466 ~g~~~~A~~~~~~m~~ 481 (510)
.|+.+.+.++++++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8999999999988876
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=3.9e-12 Score=128.13 Aligned_cols=338 Identities=11% Similarity=-0.051 Sum_probs=275.1
Q ss_pred hhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHh----cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 010459 74 HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKN----SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML 149 (510)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 149 (510)
.++...++..+. ...+. -++..+..+-..|.. .++.++|.+.|+...+ . -+...+..|-.+|
T Consensus 56 ~~~~~~A~~~~~-------~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFR-------RAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-K---GLPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHH-------HHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHH-------HHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHH
Confidence 566677777666 22222 245567778888888 8999999999998876 3 3667778888889
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 150 CE----EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 150 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
.. .+++++|+..|++..+.| +...+..|-..|.. .++.++|++.|++..+.| +..++..|-..|..
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 88 889999999999998865 67888888888887 789999999999998876 78889999999988
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh--
Q 010459 222 ----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-- 291 (510)
Q Consensus 222 ----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 291 (510)
.++.++|.+.|++..+.| +...+..+-..|.. .+++++|.+.|++..+.| +...+..+-..|..
T Consensus 196 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 196 GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 899999999999998764 56778888888886 889999999999988775 45667777777777
Q ss_pred --cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-----cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc--
Q 010459 292 --FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN-----YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-- 362 (510)
Q Consensus 292 --~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-- 362 (510)
.++.++|.+.|+...+.| +...+..|-.+|... +++++|...++..... .+...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc
Confidence 899999999999998765 456777788888887 8999999998877654 45567777777776645
Q ss_pred -ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCc
Q 010459 363 -SHRGIDSVVREMESAKVRWNVTTANIILLAYLK----MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI----GFD 433 (510)
Q Consensus 363 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~ 433 (510)
+.++|.+.|++..+.| +...+..+-..|.. .++.++|...|++..+.| +...+..+-..+.. .++
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 7889999999998874 67788888888888 899999999999999875 45566666666665 789
Q ss_pred cchHHHHHHHcCCcc
Q 010459 434 GTGALEMWKRIGFLF 448 (510)
Q Consensus 434 ~~~a~~~~~~~~~~~ 448 (510)
.++|.+.+++....+
T Consensus 419 ~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 419 YVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999985544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.1e-13 Score=136.67 Aligned_cols=373 Identities=9% Similarity=-0.079 Sum_probs=204.8
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhh----c---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNI----E---KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-----A- 169 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 169 (510)
...||.+-..+...|+.++|++.|+...+. . ..+....+|+.+-..|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777788888888887765432 0 12223466777777888888888888877766532 0
Q ss_pred C-CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCC
Q 010459 170 L-KPSLEIYNSIIHGYSKI--GKFNEALLFLNEMKEMNLSPQSDTYDGLIQA---YGKYKMYDEIDMCLKMMKLDGCSPD 243 (510)
Q Consensus 170 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~ 243 (510)
. .....+|+.+..++... +++++|++.|++..+.... +...+..+... +...++.++|...+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11345565555555543 3577888888877664321 34444444433 334566677777777766543 335
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 010459 244 HITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319 (510)
Q Consensus 244 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 319 (510)
...+..+...+.. .|++++|.+.+++...... .+..++..+...|...|++++|.+.+.+..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5555555444444 3566777777777665532 256667777777888888888888888777654 334555666
Q ss_pred HHHHHHhh-------------------cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459 320 LAEVYIKN-------------------YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR 380 (510)
Q Consensus 320 li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 380 (510)
+...|... +.++.+...+.......+.....|..+...+...|+.++|.+.|++..+....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 66555432 22445555555555666666666777777777777777777777777665443
Q ss_pred cCHH--HHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChh
Q 010459 381 WNVT--TANIILL-AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP 457 (510)
Q Consensus 381 p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (510)
|... .+..+.. .+.+.|+.++|+..|++..+ +.|+.......+. .+.+++++... ..+.+...+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~---------~l~~~~~~~l~-~~p~~~~~~~ 434 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKD---------KLQKIAKMRLS-KNGADSEALH 434 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHH---------HHHHHHHHHHH-HCC-CTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHH---------HHHHHHHHHHH-hCCCCHHHHH
Confidence 3221 1222221 23456777777777776665 3344332222221 12222222211 1223455677
Q ss_pred HHHHHhhccCchhHHHHHHhhcCCC-CCCCCcccH
Q 010459 458 LVLAVYGKGHFLRYCEEVYSSLEPY-SREKKRWTY 491 (510)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 491 (510)
.+...|...|++++|.+.|++..+. ...|++.+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 7778888889999999999888873 345665544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.60 E-value=3.5e-12 Score=136.07 Aligned_cols=352 Identities=10% Similarity=0.040 Sum_probs=156.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
....+++|...|.+.+|.++++....... +.-+...-+.|+.+..+. +..+..+..++.... + ...+-..+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34666777777777777777777663111 112334444455444444 333333333333210 1 12233344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
...|.+++|.++|++.. -.....+.++. ..+++++|.++.++.. +..+|..+-.++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 44444444444444421 01111122211 3334444444443321 2333444444444444444444
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------------------------CCCHHHHH
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--------------------------PLKEDLVR 318 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~~~~~~~~ 318 (510)
+.|.+- -|...|..++.+|.+.|++++|.+.+....+..- .++...+.
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence 444221 1333444444444444444444444433333221 12222333
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398 (510)
Q Consensus 319 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 398 (510)
.+...|...|++++|..++... ..|..+...+.+.|++++|.+.+++. -+..+|..+-.+|...|+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 3333333444444444333321 23444444444444444444444332 133444444444444444
Q ss_pred hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhc--cCchhHHHHHH
Q 010459 399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK--GHFLRYCEEVY 476 (510)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~ 476 (510)
+..|...... +..+...+..++..|.+.|.+++|+.+++...... +.....+.-+...|++ -+++.++.++|
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444333322 22244455566666777777777777776553322 2334445444444444 35555666666
Q ss_pred hhcCCCCCCC------CcccHHHHHHHHHhcCCCCCC
Q 010459 477 SSLEPYSREK------KRWTYQNLIDLVIKHNGKNLD 507 (510)
Q Consensus 477 ~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a 507 (510)
..-.. ++| +...|..++-.|.+.|++|.|
T Consensus 1340 ~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1340 WSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 53332 222 345677777777777777654
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=4e-12 Score=135.68 Aligned_cols=343 Identities=12% Similarity=0.081 Sum_probs=252.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 188 (510)
+...|...|.+++|.++|+... -.....+.++. ..|++++|.++.++.. +..+|..+-.++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 4566777888888888887531 12222333333 6788888888888653 5788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
++++|.+.|.+. -|...|..++..|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 378889999999999999999999999877654 34333445899999999988644432
Q ss_pred HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459 269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348 (510)
Q Consensus 269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
. .|+...|..+-..|...|++++|..+|... ..|..+...|.+.|++++|.+.++.. .+.
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~ 1250 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NST 1250 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCH
Confidence 1 346677888999999999999999999885 48999999999999999999997665 567
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-CCCCHHHHHHHHHh
Q 010459 349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-VKPDIVTIGILYDA 427 (510)
Q Consensus 349 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~ 427 (510)
.+|..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.-.... -....+|.-..+.+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 999999999999999888877665432 366777899999999999999999998776432 11223333444445
Q ss_pred hhhcCccchHHHHHHHcCCcc----ccccccChhHHHHHhhccCchhHHHH-------------HHhhcCCCCCCCCccc
Q 010459 428 RRIGFDGTGALEMWKRIGFLF----KTVEINTDPLVLAVYGKGHFLRYCEE-------------VYSSLEPYSREKKRWT 490 (510)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~-------------~~~~m~~~g~~p~~~~ 490 (510)
-.+.++..+++++|.+-.... ..-+...|.-++-.|.+.|+++.|.. .|+.... ...|...
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence 556667777777776542210 01234558888889999999998872 2333332 2345556
Q ss_pred HHHHHHHHHhcC
Q 010459 491 YQNLIDLVIKHN 502 (510)
Q Consensus 491 ~~~li~~~~~~g 502 (510)
|...+.-|...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 777777666544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.7e-13 Score=122.77 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL--SPQ----SDTYDG 214 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~t~~~ 214 (510)
.+..+...+.+.|++++|...|++..+.. .+...|..+...|...|++++|++.|++..+... .|+ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555444 4455555555555555555555555555543211 111 345555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
+...|.+.|++++|...|++..+. .|+. ..+...|++++|.+.+++...... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 555555555555555555555443 2221 223444555555555555554321 123344445555555555
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHH
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL 333 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 333 (510)
+++|.+.++...+.. +.+..++..+...|.+.|++++|
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHH
Confidence 555555555554432 12233333344444443433333
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.8e-13 Score=120.95 Aligned_cols=226 Identities=9% Similarity=0.005 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK--PS----LEIY 177 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~ 177 (510)
..|..+...+...|++++|.+.|+...+ .. .+...+..+...|...|++++|...|++..+.... ++ ..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4677888899999999999999999987 34 78889999999999999999999999998865311 12 5889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
..+...|.+.|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.... +.+...|..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999884 3553 34666788999999999998764 34567888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (510)
|++++|.+.|++..+.... +..++..+...+...|++++|.+.++...+.. +.+...+..+...|.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999876433 67889999999999999999999999998765 445777888888888888888887776
Q ss_pred HHHHhhc
Q 010459 338 DDLASRI 344 (510)
Q Consensus 338 ~~~~~~~ 344 (510)
.......
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 6554433
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=5.9e-12 Score=126.02 Aligned_cols=329 Identities=9% Similarity=-0.123 Sum_probs=217.4
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-----CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCC
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-----SR-INEFNSQKIIGMLCEE--GLMEEAVRAFQEMEGFALKPS 173 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~ 173 (510)
...+|+.+...|...|++++|...++...+... .. ....+++.+-.++.+. +++++|+..|++..+... -+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CC
Confidence 346788999999999999999999988765311 11 2345666555555554 579999999999887642 24
Q ss_pred HHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459 174 LEIYNSIIHG---YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHIT 246 (510)
Q Consensus 174 ~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 246 (510)
...+..+... +...++.++|++.+++..+.... +..++..+...+.+ .|+.++|.+++++..... +.+...
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 5556555554 34567788999999988775422 55666666555554 467788999999887665 457888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHh
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF-------------------GMLDKMEKFYKRLLN 307 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~ 307 (510)
+..+...|...|++++|.+.|++..+.... +..++..+...|... +..++|...+....+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999999999999999999998876422 566677776666432 235667777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHH---HHHHH-HHhhhhcccccHHHHHHHHHHCCCCcCH
Q 010459 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV---WCLRL-LSHACLLSHRGIDSVVREMESAKVRWNV 383 (510)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 383 (510)
.. +.+...+..+...|.+.|++++|...++......+.+... +..+. ......|+.++|++.|++..+.. |+.
T Consensus 329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~ 405 (472)
T 4g1t_A 329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKS 405 (472)
T ss_dssp HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCC
T ss_pred cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccc
Confidence 54 3345567788999999999999999998887665544322 22222 23446688899999999988754 333
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459 384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
...... ...+.++++...+.. +.+..+|..+-..+...|+.++|++.+++....
T Consensus 406 ~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 406 REKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 222222 233445555554321 235677888888899999999999999987544
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3.9e-12 Score=115.72 Aligned_cols=202 Identities=9% Similarity=-0.044 Sum_probs=168.3
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 182 (510)
+..|..+...+...|++++|.+.|+.+.+. .+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 346778888899999999999999988752 34567888899999999999999999999988764 337788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
.|...|++++|.+.|+++.+.+..| +...+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987743445 56678888889999999999999999988764 346788888999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
+|...+++..+... .+...+..+...+...|+.++|.+.++.+.+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999886543 366778888888899999999999999888754
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.2e-12 Score=116.60 Aligned_cols=196 Identities=12% Similarity=0.001 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+...|..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...|..+-.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344444444444444444444444444433211 33444444444444444444444444444332 223344444444
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459 253 EFACA-----------GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321 (510)
Q Consensus 253 ~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 321 (510)
.+... |++++|+..|++..+.... +...+..+-.++...|++++|.+.+++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 5555555555555543211 34445555555555555555555555555544 3444455555
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHH
Q 010459 322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE 373 (510)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 373 (510)
.+|...|++++|...++......+.+...+..+...+...|+.++|.+.|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555554444444444333344444444444444444444444444443
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.3e-11 Score=109.90 Aligned_cols=198 Identities=12% Similarity=-0.004 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY 184 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 184 (510)
.+..+...+...|++++|.+.++...+ ..+.+...+..+...|...|++++|...|++..+.. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444555555554444442 112233444444444444455555544444444332 12344444444444
Q ss_pred Hhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 185 SKI-GKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 185 ~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
... |++++|.+.|+++.+.+..|+ ..++..+...+.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 444 444444444444444211121 3344444444444444444444444444332 1234444444444444444444
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
|.+.+++..+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444433211233334444444444444444444444443
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=5.4e-12 Score=112.29 Aligned_cols=213 Identities=9% Similarity=-0.068 Sum_probs=181.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 456778889999999999999999999998764 34688999999999999999999999999987643 3778999999
Q ss_pred HHHHcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 217 QAYGKY-KMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 217 ~~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
..|... |++++|...|+++.+.+..|+ ...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987322333 67888999999999999999999999987642 257889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (510)
+++|.+.++.+.+.....+...+..+...+.+.|+.+.+...++.+....+.+.....
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999987652256777888888999999999999999888877766665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=7.8e-12 Score=113.70 Aligned_cols=206 Identities=9% Similarity=-0.080 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 218 (510)
...|..+...|...|++++|...|+++.+.. +.+...|..+...|.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4667788888999999999999999988764 34678888999999999999999999999877643 267788888899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
|.+.|++++|...|+++.+.+..| +...|..+...|...|++++|.+.|++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732334 566778888889999999999999998887542 257788888888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459 298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE 348 (510)
Q Consensus 298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++.+....+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999998887654 34566677777777777777777777666555544443
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.3e-12 Score=116.16 Aligned_cols=198 Identities=13% Similarity=0.040 Sum_probs=108.2
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
+++..+..+...+.+.|++++|...|+...+ -.+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3444555566666666666666666666552 233455566666666666666666666666666543 2245566666
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 181 IHGYSKI-----------GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL 249 (510)
Q Consensus 181 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 249 (510)
...+.+. |++++|++.|++..+.... +..++..+-..|...|++++|...|++..+.. .+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 6666666666666554322 44555666666666666666666666665554 45556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 305 (510)
+...|...|++++|...|++..+.... +...+..+...+...|++++|.+.++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666554221 4455555566666666666666655543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.2e-12 Score=116.54 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=144.5
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
.++..|..+...+...|++++|.+.|+...+ ..+.+...+..+...|.+.|++++|...|++..+.. +.+...|..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4455677777888888999999999888873 344567788888888888999999999998887664 3367888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
...|...|++++|.+.|+++.+... .+..++..+...|.+.|++++|...+++..+.. +.+...|..+...+.+.|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 8888888999999998888877542 367778888888888888888888888887654 34677888888888888888
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
++|.+.|++..+... .+..++..+...+...|++++|.+.++.+.+..
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888876532 256778888888888888888888888887654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.2e-12 Score=116.53 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
.....|..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.|++..+... .+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 445667777888888899999999999888754 34678888888889999999999999988877542 3677888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
..|.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++|.+.+++..+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 88888999999999998887664 44677888888888888999999998888876532 25677788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHH
Q 010459 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353 (510)
Q Consensus 297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
+|.+.++.+.+.. +.+..++..+...|.+.|++++|...++......+.+...+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 8888888887654 3456667777777777777777777766666555555555443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.3e-12 Score=120.46 Aligned_cols=246 Identities=8% Similarity=-0.102 Sum_probs=146.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
..|++++|+..|+++.+.... .+..+|..+...+...|++++|.+.|++..+... .+..+|..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 456777788888877765321 1356677777777777788888877777766532 256777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
|...|++..+.. +.+...|..+...|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+....+
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 3356677777777777777777777777776542 3333333344444555677777777766554
Q ss_pred cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC--c-CHH
Q 010459 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR--W-NVT 384 (510)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~ 384 (510)
.. +++...+. +...+ ...++.++|.+.+++..+.... | +..
T Consensus 173 ~~-~~~~~~~~-~~~~~----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFY----------------------------------LGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp HS-CCCSTHHH-HHHHH----------------------------------TTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cC-CcchHHHH-HHHHH----------------------------------HHhcCHHHHHHHHHHHhcccccccccccH
Confidence 32 12222221 22333 3333334455555554443211 1 246
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHH
Q 010459 385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMW 441 (510)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~ 441 (510)
+|..+...|.+.|++++|...|++..+. .|+. ..+ ..++...|++++|++.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 6777777888888888888888888764 3532 222 22344445566655543
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=8.2e-13 Score=121.80 Aligned_cols=253 Identities=11% Similarity=-0.059 Sum_probs=179.1
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF 190 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 190 (510)
....|++++|.+.|+.+.+..... .+..++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 456789999999999998621111 246778899999999999999999999998874 34789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 191 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
++|.+.|++..+... .+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999988643 26789999999999999999999999999875 455555555666667889999999999887
Q ss_pred HHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHH
Q 010459 271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350 (510)
Q Consensus 271 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (510)
.... +++...+ .++..+...++.++|.+.+....+.. |+. .+.+...
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-----------------------------~~~~~~~ 217 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSL-----------------------------AEHLSET 217 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHH-----------------------------HHHHHHH
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccc-----------------------------cccccHH
Confidence 7653 2333334 46777778888888999888775432 110 0001233
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459 351 WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406 (510)
Q Consensus 351 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (510)
|..+...+...|+.++|.+.|++..+..+. +. .....++...|++++|++-+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 444445555555556666666666654321 21 22233455556666655544
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=7.9e-12 Score=115.07 Aligned_cols=243 Identities=10% Similarity=0.002 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSII 181 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li 181 (510)
..+......+...|++++|.+.|+...+ ..+.+...+..+...|.+.|++++|+..|++..+....|+ ..+|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566677778888888888887764 2223444677777788888888888888888776331222 33477777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK 261 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 261 (510)
..|...|++++|++.|++..+.... +..++..+...|.+.|++++|...|++..+.. +.+...|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765432 55677778888888888888888888777653 345566666662344445788
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhhcchh
Q 010459 262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM---LDKMEKFYKRLLNSR-TPLK------EDLVRKLAEVYIKNYMFS 331 (510)
Q Consensus 262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~~~~~ 331 (510)
+|.+.|++..+.... +...+..+...+...|+ .++|...++...+.. -.|+ ...+..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 888888877765322 35666666677777676 666777777666431 1122 134455555555556665
Q ss_pred HHHHHHHHHHhhcCCchHHH
Q 010459 332 RLDDLGDDLASRIGRTELVW 351 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~ 351 (510)
+|...++......+.+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCccHHHHH
Confidence 55555555555544444433
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.7e-10 Score=106.27 Aligned_cols=158 Identities=10% Similarity=-0.072 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDG 214 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 214 (510)
..++..+-..|.+.|++++|+..|++..+ ..+...+..+...|.. .+++++|++.|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 34444455555555666666666655554 2234455555555555 566666666666555544 4555555
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 215 LIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 215 li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
+...|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|++.|++..+.+ +...+..+-
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 566666666666555543 44555555555555 566666666666555544 334444555
Q ss_pred HHHHh----cCChhHHHHHHHHHHhc
Q 010459 287 DAYMN----FGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 287 ~~~~~----~g~~~~a~~~~~~m~~~ 308 (510)
..|.. .+++++|.+.++...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 55555 55666666666555544
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.9e-11 Score=112.51 Aligned_cols=243 Identities=11% Similarity=-0.005 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQA 218 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~ 218 (510)
.+......+.+.|++++|+..|++..+... .+...|..+...|.+.|++++|++.|++..+.+..|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344566777888999999999998887642 3455788888888899999999999988877432222 3457888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
|.+.|++++|...|++..+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888887754 3466788888888888888888888888877652 22455666665244445588888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC
Q 010459 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378 (510)
Q Consensus 299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 378 (510)
.+.++...+.. +.+...+..+...+...+.. ...++|...+++..+..
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPD-------------------------------TKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTT-------------------------------CSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcc-------------------------------hhhHHHHHHHHHHHHHH
Confidence 88888877654 22344444444444444430 00344555555544321
Q ss_pred -CCcC------HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH
Q 010459 379 -VRWN------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT 420 (510)
Q Consensus 379 -~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 420 (510)
-.|+ ..+|..+...|.+.|++++|.+.|++..+. .|+...
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 256 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK 256 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence 1122 256777888888889999999999988863 465433
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.4e-10 Score=106.99 Aligned_cols=220 Identities=9% Similarity=-0.014 Sum_probs=185.2
Q ss_pred ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459 102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGLMEEAVRAFQEMEGFALKPSLEIY 177 (510)
Q Consensus 102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 177 (510)
++.++..+-..+...|++++|.+.|+...+ +-+...+..+-..|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 445677788889999999999999998875 3456788889999999 999999999999999875 78899
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459 178 NSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNL 249 (510)
Q Consensus 178 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 249 (510)
..+...|.. .+++++|++.|++..+.+ +..++..+-..|.+ .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 999999999 999999999999999876 78899999999999 999999999999999865 6677888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459 250 LIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLA 321 (510)
Q Consensus 250 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 321 (510)
+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|.+.++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 8888888 999999999999998875 56778888889999 9999999999999988752 55556666
Q ss_pred HHHHh----hcchhHHHHHHHHH
Q 010459 322 EVYIK----NYMFSRLDDLGDDL 340 (510)
Q Consensus 322 ~~~~~----~~~~~~a~~~~~~~ 340 (510)
.+|.+ .+++++|...++..
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHH
Confidence 66665 55555555544433
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.7e-11 Score=116.95 Aligned_cols=195 Identities=9% Similarity=0.013 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
.|..+-..+.+.|++++|++.++...+ -.+-+...|+.+-..+.+.|+ +++|+..|++..+.. +.+...|+.+...
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 344444445555555555555555543 112234445555555555553 555555555555443 1244555555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC-AGLLKR 262 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~ 262 (510)
+.+.|++++|+..|+++++.... +..+|..+..++.+.|++++|...|+++.+.. +.+...|+.+-..+.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 55555555555555555543322 44455555555555555555555555555443 2244555555555555 333344
Q ss_pred H-----HHHHHHHHHCCCccCHHHHHHHHHHHHhcC--ChhHHHHHHHHH
Q 010459 263 M-----EGTYKSMLTKRMHLRSSTMVAILDAYMNFG--MLDKMEKFYKRL 305 (510)
Q Consensus 263 A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m 305 (510)
| ++.|++....... +...|..+...+...| +.++|.+.+..+
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4 2444444433211 3334444444444444 344444444443
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=3.1e-11 Score=116.52 Aligned_cols=249 Identities=8% Similarity=-0.022 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
...|+.+-..+.+.|++++|+..|++..+.. +-+...|+.+...+.+.|+ +++|++.|++..+.... +...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567778888999999999999999999874 3368899999999999997 99999999999986544 7889999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-cCChh
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-FGMLD 296 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~ 296 (510)
.+.+.|++++|...|+++.+.. +.+...|..+-.++.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999875 458899999999999999999999999999987544 77889999999999 66658
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-------
Q 010459 297 KM-----EKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL------- 362 (510)
Q Consensus 297 ~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 362 (510)
+| .+.++..++.. +-+...+..+...|.+.| +++++......+ ...+.+...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 87 48888888754 446778888888898888 688999888887 667777888889988888875
Q ss_pred -c-cccHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 010459 363 -S-HRGIDSVVREM-ESAKVRWNVTTANIILLAYL 394 (510)
Q Consensus 363 -~-~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~ 394 (510)
+ .++|.++|+++ .+..+. ....|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 2 48899999998 665432 4566766666554
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=7.1e-10 Score=104.20 Aligned_cols=183 Identities=7% Similarity=-0.080 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HH-HHHHHHHHHHhcCChhHHHHHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SS-TMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
++|..+|++..+.-.+.+...|..+...+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444443100123334444444444444444444444444432 221 11 34444444444444444444444
Q ss_pred HHHhcCCCCCHHHHHHHHHHHH-hhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC-CCc
Q 010459 304 RLLNSRTPLKEDLVRKLAEVYI-KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRW 381 (510)
Q Consensus 304 ~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p 381 (510)
+..+.. +.+...+........ ..|++++|..+++......+.+...|..++..+...|+.++|..+|++..... +.|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 444332 112222221111111 12334444444333333333344445555555555555555666666666542 233
Q ss_pred --CHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 382 --NVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 382 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
....|..++..+.+.|+.++|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.9e-11 Score=119.94 Aligned_cols=26 Identities=4% Similarity=-0.210 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 385 TANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
++..+...|.+.|++++|...|++..
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444555555555555555555544
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=6.8e-10 Score=104.37 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=149.5
Q ss_pred CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLC-------EEGLM-------EEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185 (510)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 185 (510)
++|..+|+.... ..+-+...|..+...+. +.|++ ++|..+|++..+.-.+.+...|..+...+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677777764 23456667777777665 34775 888888888887311235668888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHH
Q 010459 186 KIGKFNEALLFLNEMKEMNLSPQ-SD-TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-CAGLLKR 262 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~ 262 (510)
+.|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888774 343 33 78888888888888888888888888654 234455543333322 2688888
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPL--KEDLVRKLAEVYIKNYMFSRLDDLGDD 339 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (510)
|.++|+...+... -+...|..++..+.+.|+.++|+.+|++..+.. +.| ....+..++..+.+.|+.+.+..++..
T Consensus 188 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888776422 256777788888888888888888888888753 344 345666666666666666666655444
Q ss_pred HHh
Q 010459 340 LAS 342 (510)
Q Consensus 340 ~~~ 342 (510)
...
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=3.1e-11 Score=117.87 Aligned_cols=61 Identities=7% Similarity=-0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 350 VWCLRLLSHACLLSHRGIDSVVREMESA----KVRW-NVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
++..+...+...|+.++|.+.+++..+. +-.+ ...++..+...|.+.|++++|...+++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 1111 14566667777788888888888877765
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=3.3e-11 Score=114.06 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP-QSDTYDGLIQ 217 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~ 217 (510)
..+.+.|++++|...|++..+.... + ...|..+...|...|++++|.+.+++..+. +-.| ...++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3344444555555554444443211 1 233444444444455555555444443221 1011 1233444444
Q ss_pred HHHccCCHHHHHHHHHHH
Q 010459 218 AYGKYKMYDEIDMCLKMM 235 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m 235 (510)
.|...|++++|...+++.
T Consensus 92 ~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 555555555555555443
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.4e-11 Score=112.13 Aligned_cols=245 Identities=16% Similarity=0.064 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-------ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NL 205 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 205 (510)
..++..+...|...|++++|...|+++.+. .......+|..+...|...|++++|.+.|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555666666666666666666665542 11223455666666666677777776666666542 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 010459 206 -SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD------GC-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK---- 273 (510)
Q Consensus 206 -~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 273 (510)
.....++..+...|...|++++|...|++..+. +- +.....+..+...|...|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 123456666777777777777777777766542 11 123455666777777778888888777776643
Q ss_pred --CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 010459 274 --RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-------TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343 (510)
Q Consensus 274 --g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
+..| ...++..+...+...|++++|.+.++++.+.. ..+.........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------- 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------- 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------
Confidence 2122 23466777777778888888888887776421 111100000000
Q ss_pred cCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 344 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
..+......+...+...++...++....... .+..++..+...|.+.|++++|.++|++..+
T Consensus 245 -----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 -----EEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111112222333444555556665554322 2456777888888888888888888887764
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=2.9e-11 Score=118.53 Aligned_cols=274 Identities=14% Similarity=0.057 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEM----NL-SPQSD 210 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~ 210 (510)
..+..+...+...|++++|+..|++..+.+.. +. ..|..+...|...|++++|.+.|++..+. +- .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667888899999999999998876322 33 47888888999999999999999887553 11 12345
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLD----G-CSPDHITYNLLIQEFACAGL-----------------LKRMEGTYK 268 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 268 (510)
++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7778888888899999999988887643 1 11234567777888888888 888888887
Q ss_pred HHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459 269 SMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 269 ~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+..+. +..| ...++..+...+...|++++|.+.+++..+... .++..
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------- 260 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA--------------------------- 260 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------
Confidence 76532 2111 234667777778888888888888877654210 01100
Q ss_pred hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC----C-CcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhC----C
Q 010459 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK----V-RWNVTTANIILLAYLKMKDFKHLRVLLSELPTR----H 413 (510)
Q Consensus 343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 413 (510)
.....+..+...+...|+.++|.+.|++..+.. . .....++..+...|.+.|++++|..++++..+. +
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 001233344444455555555555555444321 1 112467778888899999999999999887642 1
Q ss_pred CCC-CHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 414 VKP-DIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 414 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
-.+ ...++..+...+...|+.++|.+.+++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1235666667788889999999988876
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=9e-11 Score=116.60 Aligned_cols=347 Identities=9% Similarity=-0.039 Sum_probs=212.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM---EEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 185 (510)
+...+.+.|++++|.++|+...+ .+ +...+..|-.+|...|+. ++|+..|++..+. +...+..|-..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 55667788999999999998876 44 233444455666667777 8999999888843 5666677766555
Q ss_pred hcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 186 KIG-----KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 186 ~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
..+ +.++|++.|++..+.|.. ..+..|...|...+..+. +.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 778999999999887743 266667777776654433 445555554443 345666777777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh----cch
Q 010459 258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG---MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN----YMF 330 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~ 330 (510)
+.++++......+.+.-...+...+..+-..|...| +.++|.+.|....+.| .++...+..|-.+|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 755444444333222111112237777888888888 8889999999888887 45555556677777554 578
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHH-h--hhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-----ChhHH
Q 010459 331 SRLDDLGDDLASRIGRTELVWCLRLLS-H--ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK-----DFKHL 402 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A 402 (510)
++|...++... +.++..+..+... + ...++.++|.+.|++..+.| +...+..|-..|. .| +.++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 88888887766 5566677776665 3 45788889999999988876 5666666777776 44 89999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCccchHHHHHHHcCCccccccccChhHHHHHhhc----cCchhHHHH
Q 010459 403 RVLLSELPTRHVKPDIVTIGILYDARRI----GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK----GHFLRYCEE 474 (510)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 474 (510)
...|++.. .| +...+..|-..|.. ..+.++|.+++++....+. ......+..+|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99998887 43 34444444444433 4488889999988755432 2233344444443 457888888
Q ss_pred HHhhcCCCCC
Q 010459 475 VYSSLEPYSR 484 (510)
Q Consensus 475 ~~~~m~~~g~ 484 (510)
.|+...+.|.
T Consensus 380 ~~~~A~~~g~ 389 (452)
T 3e4b_A 380 FSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 8887776553
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=6.5e-11 Score=115.55 Aligned_cols=278 Identities=11% Similarity=0.003 Sum_probs=175.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 010459 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP 207 (510)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p 207 (510)
.+....+...-..+.+.|++++|...|++..+.+.. + ..+|..+...|...|++++|...|++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345556667777788888888888888888776321 3 356777778888888888888888876432 2111
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 010459 208 -QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPD----HITYNLLIQEFACAGL--------------------LK 261 (510)
Q Consensus 208 -~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~ 261 (510)
...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244667777777888888888888777653210 012 3466677777777777 77
Q ss_pred HHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHH
Q 010459 262 RMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDD 335 (510)
Q Consensus 262 ~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 335 (510)
+|.+.+++.... +..| ...++..+...+...|++++|.+.+++..+... .++..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------- 224 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA-------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH--------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH--------------------
Confidence 777777665431 2111 124566666677777777777777766653210 11110
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA----KVRW-NVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
....++..+...+...|+.++|.+.+++..+. +..+ ...++..+...|.+.|++++|...+++..
T Consensus 225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00123444444555555555555555554432 1111 15677888889999999999999999886
Q ss_pred hC----CCCCC-HHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 411 TR----HVKPD-IVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 411 ~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+. +-.+. ..++..+-..+...|++++|.+.+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 11111 345666677788899999999998876
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=7.4e-10 Score=95.28 Aligned_cols=167 Identities=17% Similarity=0.118 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
+..+|..+-..|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|.+.+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 55667777777777777777777777777654 235677777777777777777777777777665433 5566666777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK 297 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 297 (510)
.+...++++.|...+.+..+.. +.+...+..+-..|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776553 345667777777777778888888877777765322 56677777777777788888
Q ss_pred HHHHHHHHHhc
Q 010459 298 MEKFYKRLLNS 308 (510)
Q Consensus 298 a~~~~~~m~~~ 308 (510)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88777777654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=3.7e-11 Score=113.71 Aligned_cols=167 Identities=12% Similarity=0.018 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCS-PDH 244 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~ 244 (510)
...+......+...|++++|...|++..+.... + ...+..+...|...|++++|...+++..+. +-. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344556667788899999999999998875422 2 367788888999999999999998886532 111 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCC--------------------hhHHH
Q 010459 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGM--------------------LDKME 299 (510)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~a~ 299 (510)
.++..+...|...|++++|.+.+++..+. +-.+ ...++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57778888899999999999998886642 1111 13467777888888888 88888
Q ss_pred HHHHHHHhc----CCCC-CHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 300 KFYKRLLNS----RTPL-KEDLVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 300 ~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
+.+.+..+. +..+ ....+..+...|...|++++|...+....
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 877765431 1111 12344555566666666666666554433
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=5.1e-10 Score=96.30 Aligned_cols=166 Identities=11% Similarity=-0.049 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 287 (510)
+...|..+-..|.+.|++++|...|++..+.. +-+..+|..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455555555555566666666665555443 234555555555555555555555555555443222 3344444445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccH
Q 010459 288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI 367 (510)
Q Consensus 288 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 367 (510)
.+...++++.+.+.+....+ ..+.+...|..+...+...|+.++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~-----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA-----------------------------------LNTVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-----------------------------------hCccchHHHHHHHHHHHHhCCchhH
Confidence 55555555555555555444 3444444455555555555555666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
++.|++..+..+. +..+|..+...|.+.|++++|.+.|++..+
T Consensus 127 ~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 127 IEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666665433 566777777777777777777777777765
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=1.4e-08 Score=104.75 Aligned_cols=135 Identities=8% Similarity=0.020 Sum_probs=96.9
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL---MEEAVRAFQEMEGFA-LKPSLEI 176 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~~~~ 176 (510)
-|..+|..++..+.+.+.++.++.+|+.+.. -++.....|...+..-.+.|+ ++.+..+|++..... ..|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4667888999988888889999999998884 566777888888888888888 999999999988763 1378888
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 010459 177 YNSIIHGYSKIGKF--------NEALLFLNEMKE-MNL-SPQ-SDTYDGLIQAYGK---------YKMYDEIDMCLKMMK 236 (510)
Q Consensus 177 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~-~~t~~~li~~~~~---------~g~~~~a~~~~~~m~ 236 (510)
|..-+.-..+.++. +.+.++|+..+. .|. .|+ ...|...+..... .++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766555543 334467776543 466 554 4677777765432 335677888888877
Q ss_pred h
Q 010459 237 L 237 (510)
Q Consensus 237 ~ 237 (510)
.
T Consensus 222 ~ 222 (679)
T 4e6h_A 222 C 222 (679)
T ss_dssp T
T ss_pred h
Confidence 5
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.4e-10 Score=114.31 Aligned_cols=214 Identities=10% Similarity=0.012 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF-NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 233 (510)
+++++..+++..... +.+...|..+...|...|++ ++|++.|++..+.... +..+|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554432 22455566666666666666 6666666665554321 35555666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc--------CChh
Q 010459 234 MMKLDGCSPDHITYNLLIQEFACA---------GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF--------GMLD 296 (510)
Q Consensus 234 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~ 296 (510)
+..+. .|+...|..+-..|... |++++|.+.|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 65544 24455555555555555 5555555555555543211 344455555555544 4455
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC---CchHHHHHHHHHhhhhcccccHHHHHHH
Q 010459 297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG---RTELVWCLRLLSHACLLSHRGIDSVVRE 373 (510)
Q Consensus 297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 373 (510)
+|.+.|++..+ ..+ .+...|..+...|...|+.++|.+.|++
T Consensus 239 ~A~~~~~~al~-----------------------------------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 239 QALSAYAQAEK-----------------------------------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHH-----------------------------------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------------------------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544444 333 3344444444444444445555555555
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459 374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL 409 (510)
Q Consensus 374 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (510)
..+.... +...+..+...+...|++++|++.+.++
T Consensus 284 al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 284 AAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5544332 3445555555555555555555544333
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=2.6e-10 Score=114.03 Aligned_cols=212 Identities=8% Similarity=-0.044 Sum_probs=176.3
Q ss_pred CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010459 118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM-EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF 196 (510)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 196 (510)
.++++.+.++... ...+.+...+..+-..|...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVL--GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3566666666554 23345788899999999999999 99999999998774 33688999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CC
Q 010459 197 LNEMKEMNLSPQSDTYDGLIQAYGKY---------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA--------GL 259 (510)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~ 259 (510)
|++..+.. |+..++..+...|.+. |++++|...|++..+.. +.+...|..+...|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998854 7789999999999999 99999999999998765 45788999999999999 99
Q ss_pred HHHHHHHHHHHHHCCCc--cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 260 LKRMEGTYKSMLTKRMH--LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 260 ~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
+++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876321 378899999999999999999999999998764 33455667777777777766665544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=2.9e-10 Score=110.50 Aligned_cols=226 Identities=7% Similarity=-0.076 Sum_probs=147.5
Q ss_pred HHhcCCCCcHHHHHHHHHhhc-CC--CCCHHHHHHHHHHHH--hcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIE-KS--RINEFNSQKIIGMLC--EEGLMEEAV-----------RAFQEMEGFALKPSLEI 176 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~-~~--~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~g~~~~~~~ 176 (510)
+.+.+++++|.++.+.+.+.. .. .++...|-.++..-. -.++++.+. +.++.+... .++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 346789999999998886532 22 233344444443221 224444444 666666532 111111
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CC---
Q 010459 177 ------YNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GC--- 240 (510)
Q Consensus 177 ------~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--- 240 (510)
|......+...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..+. ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222555677889999999999998764 1111 3457888888999999999999998887642 10
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC
Q 010459 241 -SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RT 310 (510)
Q Consensus 241 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~ 310 (510)
.....+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|.+.+.+..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112456777888899999999999999887643 2111 1247778888889999999999999888762 22
Q ss_pred -CCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459 311 -PLKEDLVRKLAEVYIKNYMFSRLDDLGDDL 340 (510)
Q Consensus 311 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 340 (510)
+....++..+...|.+.|++++|...+...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333456677777777777777777765443
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=7.5e-10 Score=109.93 Aligned_cols=376 Identities=8% Similarity=-0.043 Sum_probs=228.9
Q ss_pred HHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCC---CcHHHHHHHHHhhcCCCCCHHHHH
Q 010459 67 LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRS---RQIPQVFDMWKNIEKSRINEFNSQ 143 (510)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ 143 (510)
+...+.+.|++.+++..+. ...+.+ ++..+..+-..|...|+. ++|.+.|+...+ . +...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~-------~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQ-------QLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHT---CCTGGGTCC---------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHH-------HHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHH
Confidence 3445567788888888887 333333 223333444555667777 899999987764 2 555566
Q ss_pred HHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 144 KIIGMLCEEG-----LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF---NEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 144 ~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
.|-..+...| ++++|+..|++..+.|.. ..+..|...|...+.. .++.+.+....+.| +...+..|
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~L 147 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQ 147 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHH
Confidence 6666455554 889999999999987643 2677777777776654 34555566555555 34566777
Q ss_pred HHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 010459 216 IQAYGKYKMYDE----IDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288 (510)
Q Consensus 216 i~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 288 (510)
...|...+.++. +..+++... ..+...+..+-..|...| +.++|++.|++..+.|.. +...+..+-..
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~ 222 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 778887775544 444454444 333447888888898999 899999999999888743 55555566666
Q ss_pred HHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q 010459 289 YMNF----GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV-Y--IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL 361 (510)
Q Consensus 289 ~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 361 (510)
|... ++.++|.+.|+... . -+...+..|-.+ | ...+++++|...++..... .+...+..+...|. .
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E 295 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence 6554 68999999999887 3 345566666666 3 4578899999988876644 36777777777776 5
Q ss_pred c-----ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChhHHHHHHHhhhhCCCCCCHHHHHHHHH-hhhhc
Q 010459 362 L-----SHRGIDSVVREMESAKVRWNVTTANIILLAYLK----MKDFKHLRVLLSELPTRHVKPDIVTIGILYD-ARRIG 431 (510)
Q Consensus 362 ~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~ 431 (510)
| +.++|.+.|++.. . -+...+..|-..|.+ ..+.++|...|++..+.|...-......+.. +....
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBC
T ss_pred CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCC
Confidence 5 7888999998877 3 266677777777766 3489999999999988774222222222221 23345
Q ss_pred CccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459 432 FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE 480 (510)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (510)
.+..+|..++++....+.+...... ..+......+..++|.++.++..
T Consensus 372 ~d~~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHH
Confidence 6889999999987555433211111 11222233456666666665443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.2e-10 Score=107.28 Aligned_cols=241 Identities=13% Similarity=0.092 Sum_probs=170.0
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF------A- 169 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 169 (510)
..++..+...+...|++++|.++++.+.+.. .......++..+...|...|++++|...|++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3577888899999999999999999887521 23334567888999999999999999999988754 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 010459 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---- 238 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---- 238 (510)
......+|..+...|...|++++|.+.|++..+. +-.| ...++..+...|.+.|++++|...|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1224578899999999999999999999998764 2222 4567888999999999999999999998753
Q ss_pred --CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCccCH-------HHHHHHHHHHHhcCChhHHHHH
Q 010459 239 --GCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-------RMHLRS-------STMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 239 --g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
+-. ....++..+...|...|++++|.+.|++..+. ...+.. ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 112 23567888999999999999999999998753 111221 2222333334444555566666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI 344 (510)
Q Consensus 302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
+....... +....++..+...|.+.|++++|...++......
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 66555432 3345677889999999999999999988776543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.8e-09 Score=92.35 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. ..+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666543 2356667777777777777777777777766543 22556666677777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHH
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 299 (510)
...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777766543 3456666667777777777777777777766553 224566666777777777777777
Q ss_pred HHHHHHHh
Q 010459 300 KFYKRLLN 307 (510)
Q Consensus 300 ~~~~~m~~ 307 (510)
+.++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.5e-09 Score=105.32 Aligned_cols=299 Identities=7% Similarity=-0.058 Sum_probs=159.5
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCChHHHH-----------HHHHHHHHCCCCCCHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGF--ALKPS--LEIYNSIIHGY--SKIGKFNEAL-----------LFLNEMKEMNLSPQSDT 211 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~g~~p~~~t 211 (510)
+.+.+++++|..+++++.+. .++.| ...|-.++..- ...++.+.+. +.++.+.... ++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34567888888888777543 12223 33334443321 1223334444 5555554321 11111
Q ss_pred HHH------HHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-
Q 010459 212 YDG------LIQAYGKYKMYDEIDMCLKMMKLD----GCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM- 275 (510)
Q Consensus 212 ~~~------li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~- 275 (510)
+.. ....+...|++++|...|++..+. +-.+ ...+|..+-..|...|++++|...+++..+. +-
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 111 334455667777777777776542 1011 2345666666677777777777777665532 11
Q ss_pred cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHH
Q 010459 276 HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353 (510)
Q Consensus 276 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
.| ...++..+...|...|++++|.+.+....+..- .++.. ....++..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~ 229 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ------------------------------LMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH------------------------------HHHHHHHH
Confidence 11 124555666666667777777776666553210 01110 00123444
Q ss_pred HHHHhhhhcccccHHHHHHHHHH----CCC-CcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC---CCCC-HHHHHHH
Q 010459 354 RLLSHACLLSHRGIDSVVREMES----AKV-RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH---VKPD-IVTIGIL 424 (510)
Q Consensus 354 li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~t~~~l 424 (510)
+...|...|+.++|.+.|++..+ .+. +....++..+...|.+.|++++|...+++..+.. -.|. ...+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555544 122 2245667777778888888888888887765421 0121 1223444
Q ss_pred HHhhhhcCc---cchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 425 YDARRIGFD---GTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 425 i~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
-..+...|+ .++|+.++++.... +.....+..+...|.+.|++++|.+.+++..+
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445666666 77778887776322 11223344566778888888888888776544
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.9e-09 Score=92.29 Aligned_cols=165 Identities=10% Similarity=0.017 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..|..+...+...|++++|.+.++.+.+ ..+.+...+..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3566778889999999999999997753 334577889999999999999999999999998764 3478889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 263 (510)
+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3477889999999999999999999999988765 45788999999999999999999
Q ss_pred HHHHHHHHHC
Q 010459 264 EGTYKSMLTK 273 (510)
Q Consensus 264 ~~~~~~m~~~ 273 (510)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998754
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=1.3e-07 Score=97.46 Aligned_cols=152 Identities=8% Similarity=0.002 Sum_probs=113.6
Q ss_pred CCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 010459 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---FNEALL 195 (510)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~ 195 (510)
..+-...|+.... ..+-|..+|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++ .+.+.+
T Consensus 48 ~~d~i~~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4445555555543 34579999999999999999999999999999876 35577889999999889998 999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH--------
Q 010459 196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMY--------DEIDMCLKMMKL-DGC-SP-DHITYNLLIQEFA-------- 255 (510)
Q Consensus 196 ~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~-------- 255 (510)
+|++.+... ..|+...|...+....+.++. +...++|+.... .|. .+ +...|...|.-..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998764 248888998888776665553 345578887554 466 45 4678888887543
Q ss_pred -HcCCHHHHHHHHHHHHHC
Q 010459 256 -CAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 256 -~~g~~~~A~~~~~~m~~~ 273 (510)
..++++.+..+|+.....
T Consensus 205 eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHhHHHHHHHHHHHHHhC
Confidence 344578888999888753
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.7e-08 Score=96.03 Aligned_cols=159 Identities=12% Similarity=-0.012 Sum_probs=72.9
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHH
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEF----NSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSL----EIYNSIIH 182 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~ 182 (510)
.+...|++++|...++..... ....+.. +++.+...|...|++++|...+++..+... .++. .+++.+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344456666666666555431 1111111 334444555555666666666555442210 0111 22344445
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEM----NLS--P-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS----PDHITYNLLI 251 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li 251 (510)
.+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+.... ....+|..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 555556666665555555331 111 1 1223344555555555555555555554432111 0123344445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 010459 252 QEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~ 271 (510)
..+...|++++|...+++..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555544
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.4e-09 Score=100.03 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=155.4
Q ss_pred HhcCCCCcHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010459 114 KNSSRSRQIPQVFDMWKNIE------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF------AL-KPSLEIYNSI 180 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l 180 (510)
...|++++|.+.|+...+.. ..+....++..+...|...|++++|+..|++..+. +- +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35688888888888766521 11234567889999999999999999999988754 11 2235688999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEM------NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD------G-CSPDHIT 246 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~ 246 (510)
...|...|++++|.+.|++..+. .- .....++..+...|...|++++|...|++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 224667888999999999999999999998754 1 1224567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHH----hcC--CCC
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTK-------RMHLRS-STMVAILDAYMNFGMLDKMEKFYKRLL----NSR--TPL 312 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~--~~~ 312 (510)
+..+...|...|++++|.+.|++..+. ...+.. ..+..+.......+....+.. +.... ..+ .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999988753 122222 223333333333222222222 11111 111 112
Q ss_pred CHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459 313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 313 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 342 (510)
...++..+...|.+.|++++|...++....
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888999999999888776543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=7.1e-09 Score=108.08 Aligned_cols=165 Identities=13% Similarity=0.128 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA 218 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 218 (510)
...|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+.... +..+|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777888888888887777653 224677777777888888888888888777764322 46677777778
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 298 (510)
|.+.|++++|.+.|++..+.. +-+...|+.+-..|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 888888888888887777654 335677777778888888888888888877765322 466777777788888888777
Q ss_pred HHHHHHHHh
Q 010459 299 EKFYKRLLN 307 (510)
Q Consensus 299 ~~~~~~m~~ 307 (510)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=3.5e-08 Score=95.20 Aligned_cols=270 Identities=10% Similarity=-0.034 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQ----SDTY 212 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~ 212 (510)
.......+...|++++|...+++........+. .+++.+...+...|++++|.+.+++..+... .++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455677889999999999998775422232 2567777888899999999999988765311 112 2345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc----cCHHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLD----GCS--P-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH----LRSST 281 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t 281 (510)
..+...+...|++++|...+++..+. +.. | ....+..+-..+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67888899999999999999887642 222 2 2445666778899999999999999987753211 12456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C-HHHHH----HHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHH
Q 010459 282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-K-EDLVR----KLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVW 351 (510)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 351 (510)
+..+...+...|++++|...+++..+..-.+ . ..... .....+...|+++++...+.......+.+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7788888999999999999999887532111 1 12111 33455778999999999877765433221 2346
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 352 CLRLLSHACLLSHRGIDSVVREMESA----KVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 352 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
..+...+...|+.++|.+.+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888999999999998877543 222233 3566677788999999999999998764
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=1.2e-09 Score=100.57 Aligned_cols=157 Identities=19% Similarity=0.150 Sum_probs=117.2
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCC-CCHHHHHHHH
Q 010459 151 EEGLMEEAVRAFQEMEG-------FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NLS-PQSDTYDGLI 216 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~-p~~~t~~~li 216 (510)
..|++++|+..|++..+ ...+....+|..+...|...|++++|++.|++..+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666655555443 222234678889999999999999999999988654 222 2456788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCcc-CHHHH
Q 010459 217 QAYGKYKMYDEIDMCLKMMKLD------G-CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK------RMHL-RSSTM 282 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 282 (510)
..|...|++++|...|++..+. . .+....+|..+...|...|++++|.+.|++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999887653 1 1234667888888999999999999999888754 1122 35678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
..+...|...|++++|.+.+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888889999999999999988765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=2.3e-08 Score=96.77 Aligned_cols=311 Identities=10% Similarity=-0.064 Sum_probs=169.6
Q ss_pred CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCChHHHH---------HH
Q 010459 134 KSRINEFNSQKIIGML--CEEGLMEEAVRAFQEMEGF--ALKPS--LEIYNSIIHGY--SKIGKFNEAL---------LF 196 (510)
Q Consensus 134 ~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~---------~~ 196 (510)
...|+..+-+.|-+.| .+.+++++|..+++++.+. .++.| ...|-.++..- .-.+....+. +.
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3456667777777777 7788888888888877542 12222 33344444321 1111211222 44
Q ss_pred HHHHHHCCCCCC-HH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 197 LNEMKEMNLSPQ-SD---TYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPD----HITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 197 ~~~m~~~g~~p~-~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
++.+.......+ .. .+-.....+...|++++|...|++..+... .++ ..++..+-..|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 444432111101 00 112233345677888888888887764310 122 446667777788888888888888
Q ss_pred HHHHHC----C-Ccc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhhcchhHHHHH
Q 010459 268 KSMLTK----R-MHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPL-KEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 268 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
++..+. + ..+ ...++..+...|...|++++|.+.+....+. +..+ ...++..+...|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 776532 1 111 2356677777788888888888888776542 1110 112334444445555555444444
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH-----CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-----AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
|++..+ .... ...++..+...|.+.|++++|...+++..+
T Consensus 245 ----------------------------------~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 245 ----------------------------------FQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp ----------------------------------HHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444333 2222 255666677777777777777777777654
Q ss_pred CCC---CCC-HHHHHHHHHhhhhcCc---cchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459 412 RHV---KPD-IVTIGILYDARRIGFD---GTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 412 ~g~---~p~-~~t~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (510)
..- .|. ...+..+-..+...++ ..+|+..+++.... +.....+..+...|.+.|++++|.+.|++..+
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 211 122 2334334334555555 67777777764322 11122344566677777888887777776543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=5.6e-08 Score=86.61 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
.|+..+...-..|.+.|++++|+..|++..+....++...|..+...+.+.|++++|++.|++..+.... +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4556677777777778888888888887776653356677777777777888888888888877765432 456677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC---HHHHHHHH
Q 010459 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR---SSTMVAIL 286 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll 286 (510)
..|.+.|++++|...|++..+.. +.+. ..|..+-..+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 77777888888888887776643 2233 34566666677777777777777777654 333 34444555
Q ss_pred HHHH
Q 010459 287 DAYM 290 (510)
Q Consensus 287 ~~~~ 290 (510)
..|.
T Consensus 161 ~~~~ 164 (228)
T 4i17_A 161 VLFY 164 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=2.5e-08 Score=96.51 Aligned_cols=228 Identities=8% Similarity=-0.071 Sum_probs=145.3
Q ss_pred HhcCCCCcHHHHHHHHHhhc-CCC--CCHHHHHHHHHHHHh--cCCHHHHH---------HHHHHHHhCCCCCC-H---H
Q 010459 114 KNSSRSRQIPQVFDMWKNIE-KSR--INEFNSQKIIGMLCE--EGLMEEAV---------RAFQEMEGFALKPS-L---E 175 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~~li~~~~~--~g~~~~A~---------~~~~~m~~~g~~~~-~---~ 175 (510)
...+++++|.++++.+.+.. ... ++...|-.|+..-.+ .+.++.+. +.++.+.......+ . .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 57889999999998876521 222 333334444432111 12222222 55555543210101 1 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-C-CCH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GC-S-PDH 244 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~-~~~ 244 (510)
.|......+...|++++|++.|++..+.-. .+| ..++..+...|...|+++.|...+++..+. +- . ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 233344456788999999999999875421 123 457788888999999999999998887642 10 1 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHH
Q 010459 245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLKED 315 (510)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~ 315 (510)
.+++.+-..|...|++++|.+.|++..+. +..+ ...++..+-..|...|++++|.+.+.+..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57778888999999999999999887642 2221 2356778888899999999999999988761 2222355
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 316 LVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 316 ~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
++..+...|.+.|++++|...++...
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677777777777777776655544
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=2.3e-08 Score=80.31 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 220 (510)
.|..+...|...|++++|..+|+++.+.+ +.+...|..+...+...|++++|.+.|+++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34455566666666666666666665443 22455566666666666666666666666655432 24455556666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
+.|++++|.+.|+++.+.. +.+...|..+...+.+.|++++|.+.|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655443 23455555666666666666666666666554
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=2.6e-08 Score=103.89 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+..+|+.|-..|.+.|++++|++.|++..+.... +..+|..|-..|.+.|++++|...|++..+.. +-+...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678888999999999999999999988875422 57788888889999999999999998887764 346778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 332 (510)
.|.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.|++.++.. +-+...+..+...|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 899999999999999888775422 56788888888888889999888888888754 3356677777777777777777
Q ss_pred HHHHHHHH
Q 010459 333 LDDLGDDL 340 (510)
Q Consensus 333 a~~~~~~~ 340 (510)
|.+.++..
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665443
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.00 E-value=8.8e-08 Score=85.31 Aligned_cols=154 Identities=12% Similarity=0.007 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL 250 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 250 (510)
..|+..|......+.+.|++++|++.|++..+....++...+..+...+.+.|++++|...|++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788888889999999999999999998887654677888888899999999999999999988765 3366788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHH
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK---EDLVRKL 320 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l 320 (510)
...|...|++++|.+.|++..+.... +. ..|..+-..+...|++++|.+.++...+.. |+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHH
Confidence 89999999999999999998875322 33 457777777888889999999998887653 43 3455555
Q ss_pred HHHHHhhc
Q 010459 321 AEVYIKNY 328 (510)
Q Consensus 321 i~~~~~~~ 328 (510)
...|...|
T Consensus 160 ~~~~~~~~ 167 (228)
T 4i17_A 160 GVLFYNNG 167 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=4.9e-08 Score=78.28 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
..|..+...+...|++++|.++|+++.+.+. .+..++..+...+...|++++|...|+++.+.. +.+...|..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3577888889999999999999999877543 367788888888999999999999999987764 45677888888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
...|++++|.+.++++..... .+..++..+...+...|++++|.+.+..+.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999998887642 356778888888999999999999998887643
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=2.3e-07 Score=85.19 Aligned_cols=145 Identities=8% Similarity=-0.011 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 158 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
|+..|++..+.+ .++..++..+..++...|++++|++++.+-...|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 34555555666777777777777777776655443 1245566667777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 237 LDGCSP-----DHITYNLLIQEF--ACAG--LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 237 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|+++++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 244444555452 2223 677777777776544 24433334444466677777777777765543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=9.2e-07 Score=81.18 Aligned_cols=180 Identities=10% Similarity=0.043 Sum_probs=137.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
|...|+.... .+ .++..++..+..++...|++++|++++.+....|. .-+...+-.++..+.+.|+++.|.+.+++|
T Consensus 85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776654 22 56666777888999999999999999999876653 236788889999999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHHHHc--cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 201 KEMNLSP-----QSDTYDGLIQAYGK--YK--MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 201 ~~~g~~p-----~~~t~~~li~~~~~--~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
.+. .| +..+...|..++.. .| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 874 56 35666666666333 34 899999999999765 4553344455558999999999999999776
Q ss_pred HCC-----C---cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 272 TKR-----M---HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 272 ~~g-----~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
+.- . .| |..++..+|......|+ ++.+++.++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 531 1 23 55666577777777786 8899999998764
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=1.6e-07 Score=87.22 Aligned_cols=199 Identities=7% Similarity=-0.093 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhc---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIE---KSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LE 175 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~ 175 (510)
.|......|...|++++|.+.|....... +..++ ..+|+.+..+|.+.|++++|+..|++..+.... .+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445666778888888888887665431 21222 457778888888888888888888776543100 01 34
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----
Q 010459 176 IYNSIIHGYSKI-GKFNEALLFLNEMKEMNLSP-Q----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH----- 244 (510)
Q Consensus 176 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----- 244 (510)
+|+.+...|... |++++|++.|++..+..... + ..+++.+...|.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 677777777775 88888888887765431100 1 345677777788888888888888877765322211
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH------HHHHHHHHHHH--hcCChhHHHHHHHHH
Q 010459 245 -ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS------STMVAILDAYM--NFGMLDKMEKFYKRL 305 (510)
Q Consensus 245 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~--~~g~~~~a~~~~~~m 305 (510)
..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|...|+.+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 14566666777778888888887776643 2221 12344455553 334555566555443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.77 E-value=3.2e-07 Score=85.17 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHhcCChhHH
Q 010459 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR-SSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a 298 (510)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777766 23566778888888887766532 32222 45777777888888888888
Q ss_pred HHHHHHHHh
Q 010459 299 EKFYKRLLN 307 (510)
Q Consensus 299 ~~~~~~m~~ 307 (510)
...+++..+
T Consensus 97 ~~~~~~Al~ 105 (292)
T 1qqe_A 97 VDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=8.7e-07 Score=80.63 Aligned_cols=168 Identities=11% Similarity=0.110 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SP-QSDTYDG 214 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~ 214 (510)
..+-.+...+.+.|++++|...|+++.+... .+ ...|..+..+|.+.|++++|+..|++..+... .| ...++..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3333444445555555555555555554321 11 34455555555555555555555555544321 11 1233444
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 010459 215 LIQAYGK--------YKMYDEIDMCLKMMKLDGCSPDHIT-----------------YNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 215 li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~-----------------~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
+..++.+ .|++++|...|++..+.. +.+... +..+...|.+.|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444 555555555555554432 111112 23455667777777777777777
Q ss_pred HHHCCCcc--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcC
Q 010459 270 MLTKRMHL--RSSTMVAILDAYMNF----------GMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 270 m~~~g~~p--~~~t~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~ 309 (510)
..+..... ....+..+..+|... |++++|...++.+.+..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 76543211 234555666666655 66777777777776643
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=7.2e-07 Score=78.21 Aligned_cols=136 Identities=15% Similarity=0.014 Sum_probs=75.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH 364 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 364 (510)
+..++...|++++|...++...+.. +-+...+..+...|...|++++|...+.......+.+..+|..+...|...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 4555555666666666666555543 234455555555666666666666666655555556666666665555444432
Q ss_pred --ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459 365 --RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425 (510)
Q Consensus 365 --~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 425 (510)
+.+...++.... +.|....+...-.++...|++++|...|++..+ +.|+......+.
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 233444444332 223333334444556667888889998888886 457765544433
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=8.2e-07 Score=77.82 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459 180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259 (510)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 259 (510)
+...|.+.|++++|+..|++..+.... +...+..+...|.+.|++++|...|++..+.. +.+..+|..+-..|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 666666777777777777776664322 55666667777777777777777777766553 3355666666666554443
Q ss_pred --HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 010459 260 --LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL 316 (510)
Q Consensus 260 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 316 (510)
.+.+...++.... ..|....+...-.++...|++++|...|++.++. .|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 2333444443321 1222223333334445566777777777766653 355433
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=3.1e-06 Score=74.34 Aligned_cols=178 Identities=8% Similarity=-0.116 Sum_probs=142.5
Q ss_pred CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHH
Q 010459 120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----KFNEALL 195 (510)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~ 195 (510)
.+|.+.|+...+ . -+...+..|-..|...+++++|+..|++..+.| +...+..|-..|.. + +.++|++
T Consensus 3 ~eA~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 356777777765 2 577888888899999999999999999998764 67788888888887 6 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 010459 196 FLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFAC----AGLLKRMEGT 266 (510)
Q Consensus 196 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 266 (510)
.|++..+.| +..++..|-..|.. .+++++|...|++..+.|.. .+...+..|-..|.. .+++++|+..
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998876 67788888888887 88999999999999876521 126788888888888 7899999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 010459 267 YKSMLTKRMHLRSSTMVAILDAYMNF-G-----MLDKMEKFYKRLLNSRT 310 (510)
Q Consensus 267 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 310 (510)
|++..+.+ .+...+..|-..|... | +.++|.+.++...+.|.
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99988762 2444666676777653 3 89999999999888774
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=2.8e-07 Score=96.34 Aligned_cols=174 Identities=10% Similarity=-0.064 Sum_probs=133.9
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 220 GKYKMYDEIDMCLKMMK--------LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
...|++++|...|++.. +.. +.+...|..+...|.+.|++++|++.|++..+.... +...|..+-.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67889999999999887 332 346678888888999999999999999998875322 66788888888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHH
Q 010459 292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV 371 (510)
Q Consensus 292 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 371 (510)
.|++++|.+.|++..+.. +-+...+..+..+|.+.|++++ ...++......+.+...|..+...+...|+.++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988765 3356777888888888888888 88888888888888888888888888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459 372 REMESAKVRWNVTTANIILLAYLKMKD 398 (510)
Q Consensus 372 ~~m~~~g~~p~~~~~~~li~~~~~~g~ 398 (510)
++..+.... +...|..+..++...|+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 877765433 35566666666655444
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=2.6e-05 Score=72.19 Aligned_cols=223 Identities=9% Similarity=-0.011 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---CCHH
Q 010459 156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG--KFNEALLFLNEMKEMNLSPQSDTYDGLIQAY----GKY---KMYD 226 (510)
Q Consensus 156 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g~~~ 226 (510)
++|+.+++.+...... +...||.--..+...| ++++++++++.+.....+ +..+|+.--..+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666665554321 3445555555555555 566666666665554332 334444333333 333 4555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK--RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR 304 (510)
Q Consensus 227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 304 (510)
+++.+++.+.+.. +.|..+|+----...+.|.++ ++++.++++.+.... |...|+.--......+..
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~--------- 196 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL--------- 196 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence 5555555555443 345555555444445555554 555555555544333 444443332222222220
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccccc-HHHHHHHHHHCC--CCc
Q 010459 305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAK--VRW 381 (510)
Q Consensus 305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g--~~p 381 (510)
.+ ...++++.+.........+.+...|+..-..+...|+... +.++.++..+.+ -..
T Consensus 197 -------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 197 -------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp -------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred -------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 00 0014555555555556666667777666666666655433 444555544432 123
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
+...+..+...|.+.|+.++|.++++.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 667777888888888888888888888774
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=8.9e-07 Score=92.47 Aligned_cols=184 Identities=9% Similarity=-0.090 Sum_probs=152.9
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459 255 ACAGLLKRMEGTYKSML--------TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 326 (510)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999988 332 2256778888999999999999999999998764 4467888899999999
Q ss_pred hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL 406 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (510)
.|++++|...++......+.+...|..+...+...|+.++ .+.|++..+.... +...|..+..+|.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999987655 7788999999999999999999999
Q ss_pred HhhhhCCCCCCH-HHHHHHHHhhhhcC--------ccchHHHHHHHc
Q 010459 407 SELPTRHVKPDI-VTIGILYDARRIGF--------DGTGALEMWKRI 444 (510)
Q Consensus 407 ~~m~~~g~~p~~-~t~~~li~~~~~~~--------~~~~a~~~~~~~ 444 (510)
++..+. .|+. ..+..+..++...+ ++++|.+.+..+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999864 5764 45555555655433 366666666655
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=2.4e-06 Score=77.70 Aligned_cols=173 Identities=11% Similarity=0.054 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC-CHH
Q 010459 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ---SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SP-DHI 245 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~-~~~ 245 (510)
+.+...+-.+...+.+.|++++|.+.|+++.+.... + ...+..+...|.+.|++++|...|++..+... .| ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345677888888899999999999999999875422 2 56788888999999999999999999887521 11 245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCccCHHHH-----------------HHHHHHHHhcCChhHHHH
Q 010459 246 TYNLLIQEFAC--------AGLLKRMEGTYKSMLTKRMHLRSSTM-----------------VAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 246 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~ll~~~~~~g~~~~a~~ 300 (510)
.+..+..++.. .|++++|...|++..+.... +.... ..+...|...|++++|..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 66677778888 99999999999998875322 11222 344566677777777777
Q ss_pred HHHHHHhcCCCC--CHHHHHHHHHHHHhh----------cchhHHHHHHHHHHhhcC
Q 010459 301 FYKRLLNSRTPL--KEDLVRKLAEVYIKN----------YMFSRLDDLGDDLASRIG 345 (510)
Q Consensus 301 ~~~~m~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~ 345 (510)
.++.+++..-.. ....+..+..+|.+. |++++|...+..+....+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 777776543111 233455555555544 444455544444443333
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=3.2e-07 Score=78.05 Aligned_cols=158 Identities=10% Similarity=0.035 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccC
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYK 223 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g 223 (510)
+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++..+.. |+...+..+... +.+.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 4445555666666666665544332 2245556666666666666666666666554432 233222221111 11112
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 010459 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFY 302 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 302 (510)
...+|...|++..+.. +.+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455565555442 2245666666666666666666666666666553322 2345556666666666666666666
Q ss_pred HHHH
Q 010459 303 KRLL 306 (510)
Q Consensus 303 ~~m~ 306 (510)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=1.6e-05 Score=79.31 Aligned_cols=342 Identities=11% Similarity=-0.057 Sum_probs=187.0
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCC
Q 010459 117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEMEGF-AL-KPSLEIYNSIIHGYS----KIGK 189 (510)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~ 189 (510)
|+.+.+.++|++... ..|++..|...+....+.++ .+....+|+..... |. ..+...|...+.-+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 556666666665542 23566666666666655552 34455555554432 32 224555665555433 2345
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-------------KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC 256 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 256 (510)
.+.+.++|++.+.....--...|......-. ..+.+..|..+++.+...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 5666666666655211111111211111000 012233344444444321001244566665554322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459 257 AG--L-----LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM 329 (510)
Q Consensus 257 ~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 329 (510)
++ - .+.+..+|++..... +.+...|...+.-+.+.|+.+.|.+++++..+. +.+...+. .|.....
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 21 1 345667888877643 335677777778888889999999999988877 33333332 2222211
Q ss_pred hhHHHHHHHHHHh-------------hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH--HHHHHH
Q 010459 330 FSRLDDLGDDLAS-------------RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI--ILLAYL 394 (510)
Q Consensus 330 ~~~a~~~~~~~~~-------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~ 394 (510)
.++. +..+.. ........|...+....+.+..+.|..+|++. +. ..++...|.. .+....
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence 1111 111111 01112456777777777788899999999998 32 2234445543 222222
Q ss_pred cCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHH
Q 010459 395 KMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCE 473 (510)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 473 (510)
.++.+.|..+|+...+.- |+ ...+...++-....|+.+.|..+|++... ....|...++.=...|+.+.+.
T Consensus 333 -~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 333 -TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp -HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHH
T ss_pred -CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHH
Confidence 336999999999988642 33 33455566666778899999999999832 2344555555555679999999
Q ss_pred HHHhhcCC
Q 010459 474 EVYSSLEP 481 (510)
Q Consensus 474 ~~~~~m~~ 481 (510)
+++++..+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877663
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=1.7e-06 Score=76.84 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIYNS 179 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 179 (510)
+..+......+.+.|++++|.+.|+.+.+.....|. ...+..+..+|.+.|++++|+..|++..+....... ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666777888888888888887753222222 356667778888888888888888888765322111 13433
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010459 180 IIHGYSK------------------IGKFNEALLFLNEMKEMNLSPQS-DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC 240 (510)
Q Consensus 180 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 240 (510)
+..++.+ .|+.++|...|++..+.. |+. .++.+.... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH----
Confidence 4444433 345555555555555432 221 111111000 00000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
...-.+...|.+.|++++|...|+++.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011245567888999999999999888753221 12467778888999999999999998887764
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=3e-05 Score=71.75 Aligned_cols=226 Identities=9% Similarity=-0.007 Sum_probs=162.3
Q ss_pred HHHHHhcCCC-CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 010459 110 IRFLKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG--LMEEAVRAFQEMEGFALKPSLEIYNSIIHGY-- 184 (510)
Q Consensus 110 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-- 184 (510)
+.+..+.|.. ++|+++++.+.. -.+-+..+|+.--..+...| +++++++.++.+.... +.+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3344455554 589999998875 22345566888888888888 9999999999999875 34778888766555
Q ss_pred --Hhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 185 --SKI---GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD--EIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 185 --~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
... +++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ +++..++++.+.. +.|...|+---....+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999987654 8889998888888889888 9999999999876 46888998776666666
Q ss_pred CC------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhhc
Q 010459 258 GL------LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNY 328 (510)
Q Consensus 258 g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~ 328 (510)
+. ++++++.++++....+. |...|+-.-..+.+.|+... ..++...+.+.+ -..+...+..+.+.|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 66 88888988888877544 77778777777777776433 444555444322 1234455555666665555
Q ss_pred chhHHHHHHHHHH
Q 010459 329 MFSRLDDLGDDLA 341 (510)
Q Consensus 329 ~~~~a~~~~~~~~ 341 (510)
+.++|.+++..+.
T Consensus 273 ~~~~A~~~~~~l~ 285 (306)
T 3dra_A 273 KYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555544443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=9.4e-07 Score=90.44 Aligned_cols=154 Identities=7% Similarity=-0.098 Sum_probs=112.7
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010459 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL 195 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 195 (510)
.|++++|.+.++...+ ..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4778889998887763 233457788888899999999999999999988764 3367888889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 010459 196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA---GLLKRMEGTYKSMLT 272 (510)
Q Consensus 196 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 272 (510)
.|++..+.... +...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998775432 57788889999999999999999999887764 34677888888889998 999999999998887
Q ss_pred CC
Q 010459 273 KR 274 (510)
Q Consensus 273 ~g 274 (510)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=4.2e-06 Score=74.26 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-P-SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQS-DTYDG 214 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~t~~~ 214 (510)
...+-.+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|++.|++..+.... |.. .++-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788889999999999998865321 1 1357888888999999999999999998775432 111 23333
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010459 215 LIQAYGK------------------YKMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTKRM 275 (510)
Q Consensus 215 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 275 (510)
+...+.+ .|+.++|...|+++.+.- |+ ...+.+..... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHH----
Confidence 3334433 456677777777766542 22 22222111100 0000000
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459 276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL--KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT 347 (510)
Q Consensus 276 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
.....+...+.+.|++++|...++.+++..-.. ....+..+..+|.+.|++++|.+.++.+....+.+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 111345677889999999999999998764111 12567889999999999999999998887666554
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=1.1e-06 Score=81.43 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667778888889999999999999988764 236778889999999999999999999988664 3554433332
Q ss_pred H-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcC
Q 010459 216 I-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFG 293 (510)
Q Consensus 216 i-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g 293 (510)
. ..+.+.++.++|...|++..+.. +.+...+..+...+...|++++|.+.|.+..+.... .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 23566777888888888887764 457888889999999999999999999998876432 13567888899999999
Q ss_pred ChhHHHHHHHHHH
Q 010459 294 MLDKMEKFYKRLL 306 (510)
Q Consensus 294 ~~~~a~~~~~~m~ 306 (510)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999888887654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=1.1e-06 Score=89.77 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG 183 (510)
Q Consensus 104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 183 (510)
..|..+...+.+.|++++|.+.++...+ -.+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555442 122234455555555555555555555555554432 1234455555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhC
Q 010459 184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY---KMYDEIDMCLKMMKLD 238 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~ 238 (510)
|.+.|++++|.+.|++..+.... +..++..+...+.+. |+.++|...+++..+.
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55555555555555555443211 344455555555555 5555555555555443
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=1.7e-06 Score=80.20 Aligned_cols=198 Identities=8% Similarity=-0.046 Sum_probs=135.5
Q ss_pred CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-
Q 010459 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN---SQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSL- 174 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~- 174 (510)
.|+..+...+...+.-. ...++. .....+... +...+..+...|++++|...+++..+... .|+.
T Consensus 43 ~~~~~~l~~i~~~l~~~-----~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIP-----IIHFYE-----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCHHHHHHHHHHHTCC-----THHHHH-----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCHHHHHHHHHHhCcC-----HHHHhC-----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 56666766666655321 112222 222233333 33346778889999999999999886421 2221
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCC
Q 010459 175 ---EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKL----D-GCS 241 (510)
Q Consensus 175 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~ 241 (510)
..+..+...+...+++++|++.|++..+.... ++ ..+++.+...|...|++++|...|++..+ . +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 23445777777788999999999998874322 23 33688999999999999999999988773 1 212
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCccC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 010459 242 PD-HITYNLLIQEFACAGLLKRMEGTYKSMLT----KRMHLR-SSTMVAILDAYMNFGM-LDKMEKFYKRLLN 307 (510)
Q Consensus 242 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~ 307 (510)
+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|..+-.++.+.|+ .++|.+.+++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22 34778888999999999999999987764 222222 5688888889999994 6999998888764
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=6.7e-07 Score=76.02 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
.....+.+.|++++|...|++..+... -+...+..+...+...|++++|...++...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 334445555556666555555443211 1344555555555555666665555555443
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=3.9e-06 Score=73.43 Aligned_cols=128 Identities=14% Similarity=0.008 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
+..+...+.+.|++++|...|++.. .|+...|..+...|.+.|++++|++.|++..+.. ..+..+|..+...|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445566677788888888877664 5677778888888888888888888888776654 2256677777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 222 YKMYDEIDMCLKMMKLDGCS--------------P-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
.|++++|...|++..+.... | +...|..+...|.+.|++++|.+.|+...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888877764311 1 12567777778888888888888888877653
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=2.4e-06 Score=78.95 Aligned_cols=174 Identities=9% Similarity=0.013 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010459 155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM 234 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 234 (510)
.+...+.+.... +.+...+..+...+.+.|++++|.+.|++..+.... +...+..+...|.+.|++++|...+++
T Consensus 102 ~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344445555443 445566667777777788888888888877765422 566777777778888888888888877
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C
Q 010459 235 MKLDGCSPDHITYNLL-IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-L 312 (510)
Q Consensus 235 m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~ 312 (510)
.... .|+....... ...+.+.++.++|.+.+++...... .+...+..+...+...|++++|.+.+.++.+..-. .
T Consensus 177 ~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 7654 3444333222 2235566677777777777766532 25667777777777778888888877777765311 1
Q ss_pred CHHHHHHHHHHHHhhcchhHHHHH
Q 010459 313 KEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 313 ~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
+...+..+...|...|+.+++...
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHH
Confidence 144555555555555555554444
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=0.00014 Score=72.40 Aligned_cols=328 Identities=9% Similarity=-0.004 Sum_probs=205.4
Q ss_pred CCChhhHHHHHHHHHhcCC-CCcHHHHHHHHHhhcCCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC
Q 010459 100 DWTKDHFWAVIRFLKNSSR-SRQIPQVFDMWKNIEKSR-INEFNSQKIIGMLC----EEGLMEEAVRAFQEMEGFALKPS 173 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~ 173 (510)
.|+...|...++...+.+. .+....+|+.....-|.. .+...|...+..+. ..++++.+..+|++........-
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 4688899988888877763 567888999888655643 47788988888765 35788999999999987321111
Q ss_pred HHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----HHHHHHHHH
Q 010459 174 LEIYNSIIHGYSK-------------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK--M-----YDEIDMCLK 233 (510)
Q Consensus 174 ~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~-----~~~a~~~~~ 233 (510)
...|......-.. .+.+..|..+++++...--..+...|...+..-...+ - .+.+..+|+
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 1233322221100 1122334444444432100013446666665533221 1 345678899
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---
Q 010459 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--- 310 (510)
Q Consensus 234 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--- 310 (510)
+..... +.+...|-..+.-+.+.|+.+.|..+|++.... |+...... .|+...+.++. ++.+.+.-.
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC---
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhc
Confidence 887653 456888999999899999999999999999877 44322211 23332222222 333332110
Q ss_pred ------CC---CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-ccccHHHHHHHHHHCCCC
Q 010459 311 ------PL---KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-SHRGIDSVVREMESAKVR 380 (510)
Q Consensus 311 ------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~ 380 (510)
.+ ...+|...+..+.+.+.++.|..++... ..+......|..........+ +.+.|..+|+...+.-..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 01 1245666677776778899999998888 333344455554333333344 689999999998875422
Q ss_pred cCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
+...|...++-..+.|+.+.|..+|+...+ ....|...+.--...|+.+.+.+++++.
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566677777888999999999999842 4667777777666778888888877766
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=9.3e-06 Score=71.24 Aligned_cols=142 Identities=10% Similarity=0.017 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHH
Q 010459 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----MYDEIDMCL 232 (510)
Q Consensus 157 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~a~~~~ 232 (510)
+|++.|++..+. -+...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466677776664 366777777777777788888888888777765 56667777777776 5 777788777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 010459 233 KMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMN----FGMLDKMEKFYK 303 (510)
Q Consensus 233 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~ 303 (510)
++..+.| +...+..|-..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|.+.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776643 45566666666665 66777777777777766531 014556666666666 566777777777
Q ss_pred HHHhc
Q 010459 304 RLLNS 308 (510)
Q Consensus 304 ~m~~~ 308 (510)
+..+.
T Consensus 154 ~A~~~ 158 (212)
T 3rjv_A 154 GSSSL 158 (212)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 76655
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.53 E-value=3.2e-06 Score=79.01 Aligned_cols=190 Identities=6% Similarity=-0.057 Sum_probs=128.6
Q ss_pred cCCCCcHHHHHHHHHhhcC-----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 010459 116 SSRSRQIPQVFDMWKNIEK-----SRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LEIYNSII 181 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~-----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li 181 (510)
.|++++|.++++...+... ..++. ..|+.....|...|++++|...|.+..+.... .+ ..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666665543211 12332 24666677788889999999888877643110 01 35788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEM----NLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSP-DHITYNLLI 251 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li 251 (510)
..|.+.|++++|++.|++..+. |-. .-..+++.+-..|.+ |++++|...|++..+. +-.+ ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8899999999999988876542 211 113577788888888 9999999988886542 1110 145777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 252 QEFACAGLLKRMEGTYKSMLTK----RMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
..|.+.|++++|+..|++.... +..+. ..++..+...+...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8899999999999999887652 22222 2356666777777899999999998887
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=7.1e-07 Score=73.66 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=23.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
+-..|.+.|++++|++.|++..+.... +..+|..+...|...|++++|...|+...+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 333444444444444444444333211 333444444444444444444444444433
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=3.7e-05 Score=71.13 Aligned_cols=208 Identities=11% Similarity=-0.063 Sum_probs=144.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHH
Q 010459 125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY---NSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
.+..+.. ....|+..+...+...+.-.- +.+.......+...+ ...+..+...|++++|.+++++..
T Consensus 33 ~~s~~e~-g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIES-GAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHT-TSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444443 334677777666666554321 111111112333333 344678899999999999999987
Q ss_pred HCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 202 EMNL-SPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PD----HITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 202 ~~g~-~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
+... .|+. ..+..+...+...|++++|...|++..+.... ++ ..+++.+-..|...|++++|+..|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7432 2332 23445777888889999999999999874222 23 3368999999999999999999999987
Q ss_pred H----C-CCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 010459 272 T----K-RMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLK-EDLVRKLAEVYIKNYM-FSRLDDLGDD 339 (510)
Q Consensus 272 ~----~-g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~-~~~a~~~~~~ 339 (510)
+ . +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..++..+...|.+.|+ +++|...++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3 2 22333 34788899999999999999999998774 233333 5788889999999994 6899888776
Q ss_pred HHh
Q 010459 340 LAS 342 (510)
Q Consensus 340 ~~~ 342 (510)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.49 E-value=1e-06 Score=72.72 Aligned_cols=140 Identities=8% Similarity=-0.125 Sum_probs=93.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459 254 FACAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 332 (510)
+...|++++|++.++..... .| +...+..+-..|.+.|++++|.+.|++.++.. +-+...+..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 44557788888888776543 23 23455667788888888888888888887764 3456777777777888888877
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHH-HHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010459 333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV-VREMESAKVRWNVTTANIILLAYLKMK 397 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 397 (510)
|...++......+.+..+|..+...+...|+.++|.+. +++..+..+. +..+|...-..+.+.|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777776665544 3555554333 4555555544444444
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.1e-05 Score=70.47 Aligned_cols=130 Identities=12% Similarity=-0.048 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
..+..+...+...|++++|++.|++. +.|+..+|..+...|.+.|++++|...|++..+.. +.+...|..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 44566777888999999999999877 46788999999999999999999999999988765 45788899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCC--------------cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459 255 ACAGLLKRMEGTYKSMLTKRM--------------HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~--------------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 309 (510)
...|++++|.+.|++..+... .| ....+..+..++...|++++|.+.++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999987532 12 23678888899999999999999999998765
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=7.2e-06 Score=64.34 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 220 (510)
.+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+... .+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 34444444444444444444444444332 12334444444444444444444444444433221 13334444444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMK 236 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~ 236 (510)
+.|++++|...|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444443
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=9.4e-06 Score=63.65 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|.+.|+++.+... .+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45677777777777777777777777765432 255667777777777777777777777766543 3456666777777
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010459 254 FACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~ 273 (510)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=9.7e-06 Score=67.48 Aligned_cols=127 Identities=8% Similarity=-0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 220 (510)
.+..+...+...|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.|++..+... .+..+|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34455555666666666666666665542 22455666666666666666666666666655431 24555666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPDHITYNL--LIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 270 (510)
+.|++++|...|++..+.. +.+...+.. ....+.+.|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666655442 223333322 222255556666666655543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=0.0001 Score=68.10 Aligned_cols=167 Identities=8% Similarity=-0.063 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNL---SPQ--S 209 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~ 209 (510)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|++.|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677778888888888888777664322111 2234455566777788888888888765321 112 4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC-
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKL---D-GCSP--DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR- 278 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 278 (510)
.+|+.+...|...|++++|...|++..+ . +-.+ ...+|..+...|.+.|++++|++.+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4777888888888888888888887652 1 1111 1257777778888888888888888776532 11111
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 010459 279 SSTMVAILDAYMNFGMLDKM-EKFYKRLL 306 (510)
Q Consensus 279 ~~t~~~ll~~~~~~g~~~~a-~~~~~~m~ 306 (510)
..+|..+...|...|+.++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45677777788888888888 66666554
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=5.1e-06 Score=77.59 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN----EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF----ALKP-SLE 175 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~ 175 (510)
.|......|...|++++|.+.|........-..+ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677778889999999999999877653211112 357888899999999999999999886543 2111 145
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSPD-HI 245 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 245 (510)
+|+.+...|.+ |++++|++.|++..+..... ...+++.+...|.+.|++++|...|++..+. +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888889988 99999999999886531111 1467888999999999999999999988752 21111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cC---HHHHHHHHHHHHhcCChhHHHHH
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LR---SSTMVAILDAYMNFGMLDKMEKF 301 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~t~~~ll~~~~~~g~~~~a~~~ 301 (510)
.+..+...+...|++++|...|++.. .... ++ ......++.++ ..|+.+...++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66677778888899999999999988 4211 11 12344555555 56776666553
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.5e-05 Score=66.22 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+...|++++|...|++..+... .+..++..+...+.+.|++++|...|++..+.. +.+...|..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45577777788888888888888888776532 257777888888888888888888888877654 3467777788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCccCHHHH--HHHHHHHHhcCChhHHHHHHHHHH
Q 010459 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTM--VAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
+...|++++|.+.|++..+.... +...+ ......+...|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888887765322 33333 333444666777777777776553
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00016 Score=67.62 Aligned_cols=177 Identities=10% Similarity=0.006 Sum_probs=110.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
+.+-....+.+..++|+++++.+..... -+..+|+.--..+...| ++++++++++.+.....+ +..+|+.--..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3333344444555778888888887643 25667887777777777 488888888888876654 66777776666666
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459 222 Y-K-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK--------RMEGTYKSMLTKRMHLRSSTMVAILDAYMN 291 (510)
Q Consensus 222 ~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (510)
. + +.++++..++.+.+.. +.|...|+--.-...+.|.++ ++++.++++.+..+. |...|+---..+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 5 5 7778888888887665 457777776555555555554 777777777776544 66666666555555
Q ss_pred cCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459 292 FGM-------LDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324 (510)
Q Consensus 292 ~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 324 (510)
.+. ++++.+..+..++.. +-|...++-+-..+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFL 252 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 554 344555554444432 23334444333333
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=5.3e-06 Score=76.42 Aligned_cols=98 Identities=10% Similarity=-0.125 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+...+..+...+.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|...+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445555666666666666666666666553211 55566666666666666666666666665543 234556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 010459 253 EFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~ 272 (510)
+|...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=0.00028 Score=66.06 Aligned_cols=177 Identities=9% Similarity=-0.002 Sum_probs=135.5
Q ss_pred HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-
Q 010459 112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI-G- 188 (510)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g- 188 (510)
...+....++|+++++.+.. -.+-+..+|+.--..+...| ++++++..++.+.... +.+..+|+.--..+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33445556689999999875 33445667887777777888 5999999999999876 44888999888877776 7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD--------EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL- 259 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 259 (510)
++++++++++.+.+...+ |..+|+.-.-.+.+.|.++ +++..++++.+.. +.|...|+---..+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 899999999999887654 8888887666666666666 8999999998776 4588999988877777776
Q ss_pred ------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 260 ------LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 260 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
++++++.+++....... |...|+-+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 68899999888876443 66677665555555544
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=6.1e-06 Score=71.43 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=99.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCC
Q 010459 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLS-PQSDTYDGLIQAYGKYKM 224 (510)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~ 224 (510)
...|++++|.+.++.+... ......+++.+...+...|++++|.+.+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444331 1234567777777777888888888877776541 111 134566777777888888
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcC
Q 010459 225 YDEIDMCLKMMKLD----GCSP--DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFG 293 (510)
Q Consensus 225 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g 293 (510)
+++|...+++..+. +-.+ ....+..+-..+...|++++|...+++.... +..+ -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776542 2111 2345667777888888888888888776532 2111 1234567777888888
Q ss_pred ChhHHHHHHHHHHh
Q 010459 294 MLDKMEKFYKRLLN 307 (510)
Q Consensus 294 ~~~~a~~~~~~m~~ 307 (510)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=1.6e-05 Score=62.95 Aligned_cols=116 Identities=12% Similarity=-0.024 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+... .+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 344445555555555555555555554432 22444555555555555555555555555544321 1344455555555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 258 (510)
.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555555544432 223444444444444444
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-05 Score=63.16 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|.+.|++..+... .+..++..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 34444444455555555555555554444321 134444445555555555555555555544432 2234444445555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010459 254 FACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~ 272 (510)
|.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=1.5e-05 Score=63.34 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ 217 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 217 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...|...|++++|++.|++..+... .+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 44555666666666666666666666666543 22556666666666666777777776666655432 24566666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459 218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258 (510)
Q Consensus 218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 258 (510)
.|.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6777777777777776665442 123344444444444433
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=2.2e-05 Score=62.08 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ 252 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 252 (510)
+...|..+...+...|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 345666667777777777777777777665432 255666677777777777777777777766543 334566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
.|...|++++|...|++..+... .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777777777777776665432 144555555555555544
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=8.1e-06 Score=69.15 Aligned_cols=123 Identities=7% Similarity=-0.019 Sum_probs=89.7
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh-
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG-YSKIGKF- 190 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~- 190 (510)
+...|++++|.+.++...+ ..+.+...|..+...|...|++++|...|++..+.. +.+...|..+... +.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 3457788888888887764 234566788888888888899999998888887654 2366777777777 7788887
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 191 -NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 191 -~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
++|.+.|++..+.... +...+..+...|.+.|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888775422 56677778888888888888888888877653
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.29 E-value=2.2e-05 Score=64.57 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+..+-..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..+-.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 345555566666666666666666666553 225566666666666666666666666666554322 455666666666
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 010459 220 GKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~ 238 (510)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=4.8e-06 Score=72.08 Aligned_cols=156 Identities=8% Similarity=-0.074 Sum_probs=115.3
Q ss_pred HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcC
Q 010459 114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF----ALK-PSLEIYNSIIHGYSKIG 188 (510)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g 188 (510)
...|++++|.+.++.+. ........++..+...|...|++++|...|++..+. +.. ....+++.+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45788999999666554 222345678899999999999999999999988752 112 23467888889999999
Q ss_pred ChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEM----NLSP--QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSPD--HITYNLLIQEFAC 256 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~ 256 (510)
++++|.+.+++..+. +-.| ...++..+...+...|++++|...+++..+. + .+. ..++..+...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 999999999887653 2121 2456788889999999999999999887632 2 111 2345777888999
Q ss_pred cCCHHHHHHHHHHHHH
Q 010459 257 AGLLKRMEGTYKSMLT 272 (510)
Q Consensus 257 ~g~~~~A~~~~~~m~~ 272 (510)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987653
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=7e-06 Score=75.57 Aligned_cols=99 Identities=7% Similarity=-0.044 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 287 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+... -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 55677888888999999999999999988764 34788888899999999999999999999887642 25778888889
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 010459 288 AYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 288 ~~~~~g~~~~a~~~~~~m~~~ 308 (510)
++...|++++|...+....+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999887753
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.27 E-value=3.3e-05 Score=61.32 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
......|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...|++..+.. +.+...|..+-.+|...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 3333444444444444444444433221 133344444444444444444444444443332 22333444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 010459 258 GLLKRMEGTYKSML 271 (510)
Q Consensus 258 g~~~~A~~~~~~m~ 271 (510)
|++++|.+.|++..
T Consensus 95 ~~~~~A~~~~~~al 108 (126)
T 4gco_A 95 REWSKAQRAYEDAL 108 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.26 E-value=0.00013 Score=67.50 Aligned_cols=27 Identities=4% Similarity=-0.328 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCChhHH-HHHHHhh
Q 010459 383 VTTANIILLAYLKMKDFKHL-RVLLSEL 409 (510)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A-~~~~~~m 409 (510)
..+|..+...|.+.|+.++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555555655555 4444443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=8.8e-06 Score=68.90 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--HH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKMY--DE 227 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 227 (510)
..|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+... |.+.|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4577777888887776553 336677888888888888888888888887665322 56666777777 6677877 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR 274 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 274 (510)
|...|++..+.. +.+...|..+...|...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888877654 3356677777778888888888888888877653
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.23 E-value=6.3e-06 Score=67.84 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|.+.|++....... +...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345556666666666666666666666654322 55566666666666666666666666666543 2345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010459 254 FACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~ 273 (510)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=3.1e-05 Score=73.25 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=94.4
Q ss_pred cCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHH
Q 010459 116 SSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--------------LEIYNSI 180 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l 180 (510)
.+++++|.+.|+.... ..| +...+..+-..|.+.|++++|+..|++..+...... ...|..+
T Consensus 126 L~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 3455566555543221 012 345677788888888888888888888876532211 3666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
..+|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...|++..+.. +.+...+..+...+.+.|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666432 255666666667777777777777777666543 23455666666666666666
Q ss_pred HHH-HHHHHHHH
Q 010459 261 KRM-EGTYKSML 271 (510)
Q Consensus 261 ~~A-~~~~~~m~ 271 (510)
++| ..+|+.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666 33444443
No 143
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.20 E-value=6.1e-05 Score=59.74 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 289 (510)
..+...-..|.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.|++..+.... +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 456677788888999999999998887664 457888888888899999999999999888876432 567888888888
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 010459 290 MNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 290 ~~~g~~~~a~~~~~~m~~~~ 309 (510)
...|++++|.+.|+..++..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88999999999988888754
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.19 E-value=8.5e-05 Score=67.21 Aligned_cols=190 Identities=12% Similarity=-0.016 Sum_probs=104.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC---------------
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSI-------IHGYSKIGKFNEALLFLNEMKEMNLSPQ--------------- 208 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 208 (510)
..++...|.+.|.+..+... -....|+.+ ...+.+.++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 46777777777777776532 245667666 3444444444444444444332 1111
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC--H
Q 010459 209 -------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR--S 279 (510)
Q Consensus 209 -------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 279 (510)
...+-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122345556667777777777777776543 333244444456777777777777776443321 111 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459 280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK--EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346 (510)
Q Consensus 280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|...++.+....+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2455666677777777777777777764332243 223344444555556665555555555444433
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=3.7e-05 Score=72.68 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
+...|..+...|.+.|++++|++.|++..+...... ..+|..+..+|.+.|++++|...|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788899999999999999999999887543221 478888888888889999999888888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 010459 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM-EKFYKRLL 306 (510)
Q Consensus 239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a-~~~~~~m~ 306 (510)
. +.+...|..+-.+|...|++++|...|++..+.... +...+..+..++...|+.+++ ..++..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 447778888888888888888888888888766422 566777777888888888777 44555554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.16 E-value=1.1e-05 Score=66.22 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
..+...+.+.|++++|...|++...... .+...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3333344444444444444444433221 133333444444444444444444444433322 12333333444444444
Q ss_pred CCHHHHHHHHHHH
Q 010459 258 GLLKRMEGTYKSM 270 (510)
Q Consensus 258 g~~~~A~~~~~~m 270 (510)
|++++|.+.|+..
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=0.00011 Score=56.62 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG 220 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 220 (510)
.+..+...+...|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.+++..+... .+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 33444444445555555555555544332 12344444444455555555555555544444321 13344444444444
Q ss_pred ccCCHHHHHHHHHHHHh
Q 010459 221 KYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~ 237 (510)
+.|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44555555554444443
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=7.1e-06 Score=71.05 Aligned_cols=148 Identities=10% Similarity=0.051 Sum_probs=71.0
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS--------------LEIY 177 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~ 177 (510)
....|.++.+.+.|+.-.. ........+..+-..+.+.|++++|+..|++..+.... |+ ...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344556666655542211 01112344556666777777777777777777654211 10 1455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
..+..+|.+.|++++|+..+++..+... .+..++..+..+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 5555555555666666655555554321 244455555555555555555555555554432 22344444444444444
Q ss_pred CCHHHHH
Q 010459 258 GLLKRME 264 (510)
Q Consensus 258 g~~~~A~ 264 (510)
++.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 4444443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=0.00013 Score=56.21 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+...|++++|.+.|++...... .+...+..+...+.+.|++++|...+++..+.. +.+...|..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45566666667777777777777777665432 255566666666667777777777776666543 2345666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010459 254 FACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~ 273 (510)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66777777777777666654
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.09 E-value=0.00012 Score=66.20 Aligned_cols=197 Identities=10% Similarity=-0.079 Sum_probs=139.3
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------
Q 010459 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKI-------IGMLCEEGLMEEAVRAFQEMEGFALKPS-------------- 173 (510)
Q Consensus 115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~-------------- 173 (510)
..++...|.+.|...... .+-....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578999999999998753 23345567666 4555555555555555544443 1221
Q ss_pred --------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--
Q 010459 174 --------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD-- 243 (510)
Q Consensus 174 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-- 243 (510)
...+-.....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...+.. .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234456778889999999999999987654 555466666678899999999999998665432 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 010459 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320 (510)
Q Consensus 244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 320 (510)
...+..+-.++.+.|++++|++.|++.......|. .......-.++.+.|+.++|..+|+++.... |+.....+|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 23667778899999999999999999885444354 3355666778889999999999999999865 444444333
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=6.7e-06 Score=71.19 Aligned_cols=158 Identities=9% Similarity=-0.062 Sum_probs=89.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--------------H
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ--------------S 209 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~--------------~ 209 (510)
.+......|+++.+.+.|+.-.... ......|..+...+.+.|++++|++.|++..+.... |+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344445566666666665322110 113456777788888899999999999888764321 11 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 010459 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289 (510)
Q Consensus 210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 289 (510)
.+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 567777777777788888888877776653 345667777777777778888888777777655321 445555555555
Q ss_pred HhcCChhHHH-HHHHHH
Q 010459 290 MNFGMLDKME-KFYKRL 305 (510)
Q Consensus 290 ~~~g~~~~a~-~~~~~m 305 (510)
...++.+++. ..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555555444 334333
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00014 Score=57.31 Aligned_cols=95 Identities=12% Similarity=-0.064 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 255 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 255 (510)
.|..+...+.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|...|++..+.. +.+...|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444455555555555555555544321 134455555555555555555555555554432 223445555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010459 256 CAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 256 ~~g~~~~A~~~~~~m~~ 272 (510)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555543
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.04 E-value=4.8e-05 Score=62.32 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 287 (510)
+...+..+...+.+.|++++|...|++..... +.+...|..+-.+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44456667777778888888888888776654 346777777777888888888888888877765322 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 010459 288 AYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 288 ~~~~~g~~~~a~~~~~~m~~~ 308 (510)
++...|++++|.+.|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888777653
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.02 E-value=5.4e-05 Score=57.89 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.|++..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333444444444444444433321 1123333333333444444444444444333
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.0002 Score=57.87 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 213 (510)
+...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|.+.|++++|++.+++..+... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 3344444445555555555555555555443 233 34444444555555555555555554444321 1334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~~ 237 (510)
.+...|.+.|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555555554443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=0.00028 Score=57.04 Aligned_cols=99 Identities=13% Similarity=0.021 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY 247 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 247 (510)
.+...|..+...+.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|...+++..+.. +.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35677778888888888888888888887764 355 5677777777888888888888888776653 3356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
..+...|...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888877754
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00018 Score=56.66 Aligned_cols=97 Identities=19% Similarity=0.062 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..|..+-..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +..+|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345556666777777777777777776653 235677777777777788888888877777665422 466777777777
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 010459 220 GKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~ 238 (510)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7788888888777776643
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=0.00017 Score=57.64 Aligned_cols=96 Identities=9% Similarity=-0.141 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+...|++++|...|++..+... .+...|..+...|.+.|++++|...|++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 34444444444444444444444444433221 123344444444444444444444444444332 1233344444444
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 010459 254 FACAGLLKRMEGTYKSML 271 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~ 271 (510)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444433
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.97 E-value=0.0086 Score=55.66 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHCCCCcCHHHHHH--HH---HHHHcCCChhHHHHHHHhhhh
Q 010459 364 HRGIDSVVREMESAKVRWNVTTANI--IL---LAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 364 ~~~a~~~~~~m~~~g~~p~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~ 411 (510)
.+++++.++++.+..+ |. .|+. ++ .+....|..+++...+.++++
T Consensus 254 l~~el~~~~elle~~p--d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 254 LQSELESCKELQELEP--EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc--cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3556666666665433 22 2321 11 122245666777777777775
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.00012 Score=59.22 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=6.3
Q ss_pred HHHHHcCCHHHHHHHHH
Q 010459 252 QEFACAGLLKRMEGTYK 268 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~ 268 (510)
.+|...|++++|.+.|+
T Consensus 94 ~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFY 110 (142)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33333333333333333
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=9.3e-05 Score=58.35 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 246 TYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
+|..+...|...|++++|.+.|+...+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.00011 Score=59.51 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++....... +...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 345556667777888888888888877654 236777788888888888888888888887775432 556777777888
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 010459 220 GKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~ 238 (510)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877654
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=0.00022 Score=56.11 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--ccC----HHHH
Q 010459 209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--HLR----SSTM 282 (510)
Q Consensus 209 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~ 282 (510)
...+..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777888888888888888877654 34677788888888888999999988888775431 122 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459 283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324 (510)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 324 (510)
..+..++...|++++|.+.++...+.. |+......+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 888899999999999999999998754 4655555444443
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.0016 Score=63.54 Aligned_cols=194 Identities=10% Similarity=-0.085 Sum_probs=127.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPS----------------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQS- 209 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~- 209 (510)
.+.+.|++++|++.|....+.....+ ..++..+...|.+.|++++|.+.+......- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45566777777777777765421111 1246778888888899988888888765421 11222
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C--Ccc
Q 010459 210 ---DTYDGLIQAYGKYKMYDEIDMCLKMMKL----DGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTK--R--MHL 277 (510)
Q Consensus 210 ---~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p 277 (510)
.+.+.+-..+...|+.+.|..+++.... .+..+. ..++..+...|...|++++|..++++.... + -.|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1223333444456888898888877653 222222 456778889999999999999999887642 2 122
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459 278 -RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLK----EDLVRKLAEVYIKNYMFSRLDDLGDDLA 341 (510)
Q Consensus 278 -~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 341 (510)
...++..++..|...|++++|..+++..... .+..+ ...+..+...+...+++++|...+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2457888899999999999999999887642 22222 2344556666677788888877765543
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.014 Score=54.29 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=29.2
Q ss_pred CChhHHHHHHHhhhhCCCCCCHHHHHH-----HHHhhhhcCccchHHHHHHHcCCc
Q 010459 397 KDFKHLRVLLSELPTRHVKPDIVTIGI-----LYDARRIGFDGTGALEMWKRIGFL 447 (510)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~-----li~~~~~~~~~~~a~~~~~~~~~~ 447 (510)
+.++++++.++++.+. .||. .|.. +..+....+..+++...+.++...
T Consensus 252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4568889999998863 4664 3322 222223455667778888777443
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.91 E-value=0.00023 Score=59.16 Aligned_cols=97 Identities=7% Similarity=-0.030 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|...|++..+.. +.+...|..+-..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555555555555555555555443211 44555555555555555555555555555443 2245555555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010459 254 FACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~ 272 (510)
|...|++++|.+.|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5556666666665555554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00032 Score=56.01 Aligned_cols=100 Identities=8% Similarity=-0.009 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 207 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 467788888888888999999999998887664 346778888888888899999999998888875432 567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 010459 287 DAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
.++...|++++|.+.+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888887653
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.00048 Score=57.17 Aligned_cols=99 Identities=10% Similarity=0.004 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD 287 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 287 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677888889999999999999999988764 347888999999999999999999999998876432 5788888999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 010459 288 AYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 288 ~~~~~g~~~~a~~~~~~m~~~ 308 (510)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=9.3e-05 Score=56.51 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP--SLEIYNSI 180 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 180 (510)
...+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...|++..+.. +. +...|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 446667888899999999999999998752 34567888999999999999999999999998874 23 57889999
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHCCC
Q 010459 181 IHGYSKI-GKFNEALLFLNEMKEMNL 205 (510)
Q Consensus 181 i~~~~~~-g~~~~a~~~~~~m~~~g~ 205 (510)
...+.+. |++++|.+.|++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999987643
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.89 E-value=0.00029 Score=55.80 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CccC----HHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR--MHLR----SSTMVAI 285 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l 285 (510)
+..|-..+.+.|++++|...|++..+.. +.+...|+.+-.+|.+.|++++|++.|++..+.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444332 2234444444445555555555555544443321 0001 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 010459 286 LDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~m~~ 307 (510)
-.++...|++++|.+.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555444
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00022 Score=56.49 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
.+-..|.+.|++++|+..|++..+.. +.+...|+.+-.+|.+.|++++|++.|++..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444445555555555555444432 1234444444455555555555555544443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=0.00022 Score=55.91 Aligned_cols=89 Identities=13% Similarity=0.002 Sum_probs=40.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY 225 (510)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 225 (510)
...+.+.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|+..|++..+.... +...+..+...|.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 334444455555555555444432 113444444444444455555555554444443211 333444444444444444
Q ss_pred HHHHHHHHHHH
Q 010459 226 DEIDMCLKMMK 236 (510)
Q Consensus 226 ~~a~~~~~~m~ 236 (510)
++|...|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00016 Score=59.37 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555556666666655554432100 01 124444555555555555555555544
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00017 Score=59.09 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-C
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSP-D 243 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~ 243 (510)
..++..+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888888999999999999887653111 11 246777888888889999999888886542 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
...+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446667777888888999888888876532 2111 134566777778888888888888877654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.78 E-value=0.00024 Score=55.75 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI 187 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 187 (510)
.+...+.+.|++++|...|+...+ ..+.+...|..+-.++.+.|++++|+..|++..+... .+...|..+...|.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 344445555555555555555543 1222444555555555555555555555555554421 1344555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 010459 188 GKFNEALLFLNEMKE 202 (510)
Q Consensus 188 g~~~~a~~~~~~m~~ 202 (510)
|++++|++.|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.001 Score=64.84 Aligned_cols=198 Identities=9% Similarity=-0.050 Sum_probs=140.8
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRIN---------------EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPS 173 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~ 173 (510)
.+.+.+.|++++|.+.|..+.+......+ ...+..+...|.+.|++++|.+.+....+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999988763222222 1246788999999999999999998876421 1112
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CC--
Q 010459 174 L----EIYNSIIHGYSKIGKFNEALLFLNEMKE----MNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GC-- 240 (510)
Q Consensus 174 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 240 (510)
. .+.+.+-..+...|+.+.|.++++.... .+..+. ..++..|...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2233333444567889999999988753 333333 457788999999999999999999987642 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 241 SP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 241 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
.+ ...++..++..|...|++++|..++++.... +.+|. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2557888999999999999999999887642 22212 24566666777888999999988877754
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.69 E-value=0.00011 Score=73.02 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 4556788888888888877653 235778888888888888888888888888876432 56788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQE--FACAGLLKRMEGTYK 268 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 268 (510)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877653 2234455555444 778888888888887
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00057 Score=67.48 Aligned_cols=124 Identities=7% Similarity=-0.015 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--------------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204 (510)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 204 (510)
...|..+-..|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677777888888899999888888776421111 3566666666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264 (510)
Q Consensus 205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 264 (510)
.. +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+...+.+.++.+++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 45566666666666666666666666665543 224445555555565555555544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=0.00076 Score=66.95 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=83.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM 294 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 294 (510)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... +..++..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3345667788999999998887664 346788888888888999999999999888876432 56778888888888889
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhhcchhHHHHHHH
Q 010459 295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEV--YIKNYMFSRLDDLGD 338 (510)
Q Consensus 295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 338 (510)
+++|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.+.
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999988888887653 1122233333333 666666666666544
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.67 E-value=0.0013 Score=51.60 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHc
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPSL---EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGK 221 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~ 221 (510)
..+.+.|++++|...|+...+.... +. ..|..+...+.+.|++++|...|++..+...... ..++..+...|.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3344455555555555554443211 11 2444444455555555555555555444321100 3334444444555
Q ss_pred cCCHHHHHHHHHHHHh
Q 010459 222 YKMYDEIDMCLKMMKL 237 (510)
Q Consensus 222 ~g~~~~a~~~~~~m~~ 237 (510)
.|++++|...|++..+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.62 E-value=0.0017 Score=50.99 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=55.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQS---DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD---HITYNLLIQ 252 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 252 (510)
.+...+.+.|++++|.+.|++..+.... +. ..+..+...|.+.|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445556667777777777766654321 12 355556666666777777777776666542 112 445555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 010459 253 EFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~ 273 (510)
.+.+.|++++|...|++..+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777776666654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.00012 Score=56.94 Aligned_cols=85 Identities=6% Similarity=-0.079 Sum_probs=39.3
Q ss_pred cCCCCcHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010459 116 SSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA 193 (510)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 193 (510)
.|++++|.+.|+...+ .+ .+.+...+..+...|.+.|++++|+..|++..+... -+...|..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3555555555555543 11 112233445555555555555555555555554421 1344455555555555555555
Q ss_pred HHHHHHHHH
Q 010459 194 LLFLNEMKE 202 (510)
Q Consensus 194 ~~~~~~m~~ 202 (510)
++.|++..+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=0.00022 Score=55.45 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=78.9
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFA--LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI 228 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 228 (510)
..|++++|+..|++..+.+ -+.+...|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999764 1234678899999999999999999999999886543 678889999999999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHH
Q 010459 229 DMCLKMMKLDG-CSPDHITYNLLIQEFAC 256 (510)
Q Consensus 229 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~ 256 (510)
...|++..+.. -.|+...|...|..|.+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999987652 12334455555555543
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.54 E-value=0.0009 Score=66.05 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
+...|..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|...|++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677888888889999999999988876432211 356666666666777777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHH
Q 010459 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME 299 (510)
Q Consensus 239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 299 (510)
. +.+...|..+-.+|...|++++|...|++..+.... +...+..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335666666666666667777777766666654211 3344555555555555555443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.0011 Score=63.30 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA---------------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 204 (510)
..+..+-..|.+.|++++|+..|++..+.- -+.+...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346667778888888888888888776410 01123445555555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM 263 (510)
Q Consensus 205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 263 (510)
.. +...|..+..+|.+.|++++|...|++..+.. +.+...+..+...+...++.+++
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 34445555555555555555555555544432 12334444444444444444433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.0012 Score=63.00 Aligned_cols=139 Identities=9% Similarity=-0.099 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
..|..+...+.+.|++++|++.|++..+.- |+. ......+ +..+.. +.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 457777788888888888888888776510 000 0000000 000000 12344555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD 334 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (510)
.+.|++++|++.+++..+... -+...|..+..+|...|++++|.+.+++..+.. +.+......+...+.+.+..+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655554321 134555555555666666666666666555443 224444555555555555555444
Q ss_pred H
Q 010459 335 D 335 (510)
Q Consensus 335 ~ 335 (510)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.43 E-value=0.0018 Score=53.39 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-------NL----------SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.|......+.+.|++++|++.|.+..+. +- ..+...|..+..+|.+.|++++|...+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554332 00 002234455555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
. +.+...|..+-.+|...|++++|...|++..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3 234455555555555555555555555555443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.38 E-value=0.02 Score=57.91 Aligned_cols=185 Identities=9% Similarity=-0.031 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010459 154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223 (510)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 223 (510)
.-++|++.++++.+... -+...|+.--..+.+.|+ ++++++.++.+.+...+ +..+|+.---.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34567777777776642 255667766555555555 77777777777765544 6667777666667777
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 010459 224 --MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 224 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 300 (510)
+++++...++++.+.. +.|...|+----...+.| .++++++.++++.+..+. |...|+-....+.+.+....
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~--- 196 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD--- 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC---
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc---
Confidence 5677777777777665 456777776666666667 677777777777665443 55566555444443211100
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcc
Q 010459 301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS 363 (510)
Q Consensus 301 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 363 (510)
.+.. . -...+.++++.+.+.......+.+..+|+..-..+...+.
T Consensus 197 -------~~~~-~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 -------SGPQ-G----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp -------SSSC-C----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred -------cccc-c----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 0000 0 0001334555566556666667777777776666655554
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00055 Score=64.62 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
..+..+-..+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34556666677778888888888776654 333321 111222222222111 12555566666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHH-HHhcCChhH
Q 010459 220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDA-YMNFGMLDK 297 (510)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~ 297 (510)
.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|...|++..+. .|+ ...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655443 234556666666666666666666666665433 222 2222222222 122344555
Q ss_pred HHHHHHHHHh
Q 010459 298 MEKFYKRLLN 307 (510)
Q Consensus 298 a~~~~~~m~~ 307 (510)
+..+|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5566655543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0022 Score=52.94 Aligned_cols=115 Identities=8% Similarity=-0.087 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459 279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR------TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC 352 (510)
Q Consensus 279 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (510)
...+...-..+.+.|++++|...|...++.- -.|+...+ ....+.....|.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence 3456666777778888888888887766430 01110000 011233455677
Q ss_pred HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419 (510)
Q Consensus 353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (510)
.+..+|...|++++|+..+++..+..+. +...|..+..+|...|++++|...|++..+. .|+..
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 7777778888888888888888776544 6778888888888899999999988888763 46544
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.31 E-value=0.00091 Score=66.19 Aligned_cols=132 Identities=6% Similarity=0.048 Sum_probs=91.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CC---ccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHH
Q 010459 253 EFACAGLLKRMEGTYKSMLTK---RM---HLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNS---RTPLK----EDLVR 318 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~---g~---~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~ 318 (510)
.+...|++++|+.++++..+. -+ .|+ ..+++.|..+|...|++++|+.++.+.++. -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887642 12 222 467889999999999999999999887642 11222 24567
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD 398 (510)
Q Consensus 319 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 398 (510)
.|...|...|++++|..++ ++|+++++.......+-...+.+.+-.++...++
T Consensus 398 nLa~~~~~~G~~~eA~~~~---------------------------~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMI---------------------------CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHH---------------------------HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH---------------------------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 7777788888887777773 3455555554433222233455666677888888
Q ss_pred hhHHHHHHHhhhh
Q 010459 399 FKHLRVLLSELPT 411 (510)
Q Consensus 399 ~~~A~~~~~~m~~ 411 (510)
+++|..+|..+++
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.30 E-value=0.013 Score=59.39 Aligned_cols=140 Identities=5% Similarity=-0.095 Sum_probs=112.2
Q ss_pred HHhcCCC-CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459 113 LKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL----------MEEAVRAFQEMEGFALKPSLEIYNSII 181 (510)
Q Consensus 113 ~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li 181 (510)
..+.|.. ++|.+.++.+.. -.+-+..+|+.--..+.+.|+ ++++++.++.+.+.. +.+..+|+.--
T Consensus 38 ~~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~ 114 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 114 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444544 577999998875 233455667776666666676 999999999999876 44889999998
Q ss_pred HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 182 HGYSKIG--KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 182 ~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
-.+.+.+ +++++++.++++.+...+ |..+|+.--..+.+.| .++++.+.++++.+.. +.|...|+-.-..+.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhh
Confidence 8999999 779999999999998765 8899999888888889 8999999999998876 45888998877776663
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0097 Score=47.59 Aligned_cols=110 Identities=8% Similarity=-0.044 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRME 264 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 264 (510)
+.++|++.|++..+.| .|+.. |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 12222 4444444444555555555555432 33444444444544 45555555
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 010459 265 GTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 309 (510)
+.|++..+.| +...+..|-..|.. .++.++|.+.++...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 33444444455554 455555555555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00075 Score=63.70 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+-.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 455777788888999999999999998764 344332 23344444443322 1 1378888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhhcchhH
Q 010459 254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYMFSR 332 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~ 332 (510)
|.+.|++++|+..+++..+... -+...|..+..+|...|++++|.+.|+...+.. +-+...+..|.... ...+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987642 267889999999999999999999999987643 22344445554442 23455666
Q ss_pred HHHHHHHHHhhcC
Q 010459 333 LDDLGDDLASRIG 345 (510)
Q Consensus 333 a~~~~~~~~~~~~ 345 (510)
+...+..+....+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7777666655443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0079 Score=48.14 Aligned_cols=112 Identities=10% Similarity=-0.066 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 010459 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEI 228 (510)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a 228 (510)
+++++|++.|++..+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..|-.+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777666 22332 5555556666777777777777665 56667777777766 6777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 010459 229 DMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRM 275 (510)
Q Consensus 229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 275 (510)
...|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777654 45566666667766 6777777777777776653
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.28 E-value=0.00094 Score=66.11 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=60.9
Q ss_pred hcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHH
Q 010459 186 KIGKFNEALLFLNEMKEM---NLSP----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGC-SP-DHITYNLLI 251 (510)
Q Consensus 186 ~~g~~~~a~~~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~li 251 (510)
..|++++|+.++++.++. -+.| ...+++.|...|...|++++|..++++..+ .|. .| ...+++.|-
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555554321 1111 233555566666666666666665555432 111 11 234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----CCC-ccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 252 QEFACAGLLKRMEGTYKSMLT-----KRM-HLRS-STMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
..|...|++++|..++++..+ .|. .|+. .+...+-.++...+.+++|+.++.++.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655432 121 1222 2333444555556666666666666654
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.24 E-value=0.0045 Score=50.52 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLS-P-----Q-----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-----GC 240 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~ 240 (510)
+......+.+.|++++|++.|++..+.... | + ...|+.+-.++.+.|++++|...+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344444555556666666666555442211 0 1 114444555555555555555555444432 00
Q ss_pred CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 241 SP-DHITY----NLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 241 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
.| +...| ...-.++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12 23344 444444445555555555554443
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.15 E-value=0.0058 Score=49.84 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKP------S-----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM-----NL 205 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~ 205 (510)
+...-..+.+.|++++|+..|++..+..... + ...|+.+-.++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455666677777777777666542110 2 237888888888888888888888888764 12
Q ss_pred CCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 010459 206 SPQ-SDTY----DGLIQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 206 ~p~-~~t~----~~li~~~~~~g~~~~a~~~~~~m~~ 237 (510)
.|| ...| ...-.++...|++++|...|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 454 4567 7888888899999999999988764
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.06 E-value=0.0077 Score=46.14 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=40.7
Q ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
.|.+.|+...+ ..+.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+...|.+.|++++|...|++.
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445554442 222344555555555555666666666665555442 123445555555555555555555555554
Q ss_pred HH
Q 010459 201 KE 202 (510)
Q Consensus 201 ~~ 202 (510)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.00086 Score=51.04 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=10.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
.+..+..+|.+.|++++|...|++..
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333334444444444443333
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.05 E-value=0.0036 Score=48.05 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555555444332 2234444445555555555555555555444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.01 E-value=0.0022 Score=52.17 Aligned_cols=99 Identities=9% Similarity=-0.051 Sum_probs=69.0
Q ss_pred hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc----------ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010459 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH----------RGIDSVVREMESAKVRWNVTTANIILLAYLKM 396 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 396 (510)
.+.+++|...+.......+.+...|+.+..++...++. ++|+..|++..+..+. +..+|..+-.+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 34555566665656666666666666666555555544 4788888888877655 677888888888776
Q ss_pred -----------CChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459 397 -----------KDFKHLRVLLSELPTRHVKPDIVTIGILYDAR 428 (510)
Q Consensus 397 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 428 (510)
|++++|++.|++..+ +.|+...|...+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 489999999999987 468887776666643
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.98 E-value=0.0086 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEM 165 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m 165 (510)
.+...|.+.|++++|...|++.
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3333333444444444444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.95 E-value=0.0097 Score=42.98 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE 253 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 253 (510)
...|..+...+.+.|++++|++.|++..+... .+..++..+...|.+.|++++|...|++..+.. +.+...+..+-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45566666667777777777777777665432 245566666777777777777777777766543 2345555555555
Q ss_pred HHHc
Q 010459 254 FACA 257 (510)
Q Consensus 254 ~~~~ 257 (510)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0047 Score=46.74 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666667777777777777777766543 335666777777777777777777777777654
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.065 Score=56.80 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=86.3
Q ss_pred HHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459 149 LCEEGLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE 227 (510)
Q Consensus 149 ~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 227 (510)
....+++++|.+ ++..+ |+......++..+.+.|.+++|+++.++- ..-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHH
Confidence 345677777766 44211 21223366777777777777777665321 111334456788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
|.++.+.+ .+...|..+-..+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 87775443 3667788888888888888888888877652 23344445556666665555544444
Q ss_pred cCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459 308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 336 (510)
.|. ++.-...|.+.|++++|.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHH
Confidence 431 22333344555555555544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.47 E-value=0.018 Score=42.92 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459 138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201 (510)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (510)
+...+..+-..|.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555555555555555554421 134455555555555555555555555443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.46 E-value=0.019 Score=42.68 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
...|..+-..|.+.|++++|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444555555555555444443211 23344444444455555555555544443
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.39 E-value=0.0095 Score=48.45 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459 152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF----------NEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 221 (510)
.+.+++|++.++...+.. +.+...|+.+-.++.+.+++ ++|+..|++..+.... +..+|..+-.+|.+
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 344555555555555443 22455555555555554443 3555555555443222 34455555555544
Q ss_pred cC-----------CHHHHHHHHHHHHhC
Q 010459 222 YK-----------MYDEIDMCLKMMKLD 238 (510)
Q Consensus 222 ~g-----------~~~~a~~~~~~m~~~ 238 (510)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 42 455555555555443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.91 E-value=0.1 Score=55.34 Aligned_cols=46 Identities=9% Similarity=0.009 Sum_probs=23.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459 149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM 200 (510)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (510)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34445555555543322 24455555555555555555555555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.83 E-value=0.17 Score=47.37 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 010459 241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317 (510)
Q Consensus 241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 317 (510)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+.+..+.. |...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 4567777777666666788888888888887764 677777677777777888888888888777653 555554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.68 E-value=0.061 Score=52.15 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CccC-HHHHHHHHHH
Q 010459 223 KMYDEIDMCLKMMKLD---GCSP----DHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KR-MHLR-SSTMVAILDA 288 (510)
Q Consensus 223 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll~~ 288 (510)
|++++|+.++++..+. -+.| ...+++.+...|...|++++|..++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666665431 1111 235667777777777777777777776543 12 2233 3467777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 010459 289 YMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 289 ~~~~g~~~~a~~~~~~m~~ 307 (510)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776653
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.63 E-value=0.21 Score=46.70 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM 282 (510)
Q Consensus 206 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 282 (510)
..+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4577788877777777788999999998888774 77777777777788889999999888887765 4455554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.55 E-value=0.045 Score=53.16 Aligned_cols=86 Identities=8% Similarity=0.012 Sum_probs=50.3
Q ss_pred ccCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CccC-HHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDG---CSP----DHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KR-MHLR-SSTMVAIL 286 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll 286 (510)
+.|++++|..++++..+.. +.| ...+++.+...|...|++++|+.++++... .| -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4456666666666655321 111 244566666677777777777777666542 12 2222 34566677
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 010459 287 DAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~m~ 306 (510)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 77777777777777766654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.41 E-value=0.1 Score=50.65 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=66.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHh
Q 010459 286 LDAYMNFGMLDKMEKFYKRLLNS---RTPLK----EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358 (510)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 358 (510)
+..+.+.|++++|++++++..+. -+.|+ ..+++.|...|...|++++|..+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~--------------------- 352 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG--------------------- 352 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH---------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH---------------------
Confidence 45566778889999998888753 12222 245667777777777777777663
Q ss_pred hhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP 410 (510)
Q Consensus 359 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (510)
++++++++.......+-...+++.|...|...|++++|..++++..
T Consensus 353 ------~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 353 ------TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp ------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3334455544333222235678889999999999999999998875
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.38 E-value=0.063 Score=52.06 Aligned_cols=85 Identities=8% Similarity=0.011 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHC---CCcc---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC-CCC-HHHHHHHHHH
Q 010459 258 GLLKRMEGTYKSMLTK---RMHL---R-SSTMVAILDAYMNFGMLDKMEKFYKRLLN-----SRT-PLK-EDLVRKLAEV 323 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~---g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~ 323 (510)
|++++|+.++++..+. -+.| + ..+++.+..+|...|++++|+.++++.++ .|- .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6888888888876542 1222 2 36788899999999999999999988764 221 222 3467888889
Q ss_pred HHhhcchhHHHHHHHHHHh
Q 010459 324 YIKNYMFSRLDDLGDDLAS 342 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~ 342 (510)
|...|++++|..++++...
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999888776653
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.20 E-value=0.063 Score=39.40 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEM 203 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 203 (510)
.+.+.|++++|...|++..+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4445555566665555555442 12334 5555555555555555565555555543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.89 E-value=0.069 Score=39.19 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=23.4
Q ss_pred hhcccccHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459 360 CLLSHRGIDSVVREMESAKVRWNVT-TANIILLAYLKMKDFKHLRVLLSELPT 411 (510)
Q Consensus 360 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (510)
..|+.++|.+.|++..+.... +.. .|..+..+|.+.|++++|...|++..+
T Consensus 12 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444443222 333 444444455555555555555555543
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.1 Score=36.86 Aligned_cols=102 Identities=10% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010459 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 226 (510)
+...++|+++.|.++.+++. +...|..|-....+.|+++-|.+.|..... +..|.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34456788888888777652 677788888888888888888888877532 344555566667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
.-.++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666555555443 135555566677788888777744
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.27 E-value=1.6 Score=35.87 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=68.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 262 (510)
...+.|+++.|.++-+++ -+...|..|-+...+.|+++-|.+.|.... . +..+.--|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D-----~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----S-----FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C-----HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C-----HHHHHHHHHHhCCHHH
Confidence 445678888888887765 267788888888888888888888888776 2 3455556666777766
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK 303 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 303 (510)
-.++-+.-...| -++.....+...|+++++.+++.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 665555544444 23444555666788888777764
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.36 Score=38.75 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 010459 158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIG---KFNEALLFLNEMKEMNLSP--QSDTYDGLIQAYGKYKMYDEIDMCL 232 (510)
Q Consensus 158 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~ 232 (510)
+.+-|.+..+.|. ++..+...+-.++++.+ +.++++.+|++..+.+ .| ....+=.|--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444444555544 3335555555544432 12 1222223333444555555555555
Q ss_pred HHHHh
Q 010459 233 KMMKL 237 (510)
Q Consensus 233 ~~m~~ 237 (510)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.89 E-value=0.51 Score=34.33 Aligned_cols=17 Identities=6% Similarity=-0.226 Sum_probs=6.3
Q ss_pred HHccCCHHHHHHHHHHH
Q 010459 219 YGKYKMYDEIDMCLKMM 235 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m 235 (510)
+.+.|++++|...|+++
T Consensus 53 ~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 53 HFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.79 E-value=0.53 Score=34.24 Aligned_cols=66 Identities=9% Similarity=-0.069 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459 137 INEFNSQKIIGMLCEEGL---MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM 203 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 203 (510)
.|...+..+..++...++ .++|..+|++..+.. +-++..+..+-..+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444433322 455666666555543 224455555555666666666666666666554
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.51 E-value=2.1 Score=33.32 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=98.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010459 151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230 (510)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 230 (510)
-.|.+++..++..+..+ ..+..-||.+|--....-+-+-..++++..-.- -| ..+||++.....
T Consensus 19 ldG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 35778888888877775 346666777777666666666666666655221 12 124566666555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT 310 (510)
Q Consensus 231 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 310 (510)
.+-.+- .+....+..++.....|.-|+-.+++.++.. +.+|+......+..||.+.|+..++.+++.+..+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 555443 3555667788888999999999999888644 4467788888899999999999999999999988885
Q ss_pred C
Q 010459 311 P 311 (510)
Q Consensus 311 ~ 311 (510)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.69 E-value=0.49 Score=35.17 Aligned_cols=66 Identities=3% Similarity=-0.058 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459 103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF 168 (510)
Q Consensus 103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (510)
+..+..+-..+.+.|++..|...|+...+.. .-.+...++..|..+|.+.|+++.|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344556666666666666666666555421 01223445555666666666666666666655543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.66 E-value=2 Score=34.38 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHHHH
Q 010459 226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKMEK 300 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~ 300 (510)
..+.+-|.+..+.| .++..+...+--++++.+ +.++++.+|++..+.. .| +...+-.+--+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444454444444 245555555555555555 4445666666555543 12 12233334445566666666666
Q ss_pred HHHHHHhc
Q 010459 301 FYKRLLNS 308 (510)
Q Consensus 301 ~~~~m~~~ 308 (510)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.62 E-value=1.2 Score=33.03 Aligned_cols=64 Identities=11% Similarity=-0.071 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010459 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN------LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 237 (510)
..-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344445555555555555555555443310 112334455555555555555555555555543
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.56 E-value=3 Score=32.49 Aligned_cols=141 Identities=6% Similarity=-0.065 Sum_probs=85.3
Q ss_pred HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459 113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE 192 (510)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (510)
+.-.|..+++.++...... ..+..-||-+|.-....-+-+-..++++.+-+. -|.. ..|++..
T Consensus 17 ~ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHH
Confidence 3446778888888887765 345566777777766666777777776666432 2221 2334444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
..+.+-.+- .+..-.+.-++.....|+-+.-.+++..+.... +|+....-.+-.+|.+.|+..+|.+++.+.-+
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444433321 134445556666667777777777777753322 56666666777777777777777777777776
Q ss_pred CCCc
Q 010459 273 KRMH 276 (510)
Q Consensus 273 ~g~~ 276 (510)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 6654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.51 E-value=1.1 Score=40.31 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 010459 155 MEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSK-----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY 225 (510)
Q Consensus 155 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~ 225 (510)
...|...+++..+. .|+ -..|..+...|.+ -|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46677777777765 455 4578888888888 488888888888888744322467777788888874 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHH
Q 010459 226 DEIDMCLKMMKLDGCS--PDHITYNL 249 (510)
Q Consensus 226 ~~a~~~~~~m~~~g~~--~~~~~~~~ 249 (510)
+++.+.+++....... |+....|.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888876544 55444443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.42 E-value=0.69 Score=41.49 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=72.1
Q ss_pred cHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChH
Q 010459 121 QIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI-GKFN 191 (510)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~ 191 (510)
.|+..+++.. .+.|+ ...|..|...|.+. |+.++|.+.|++..+.+...+..++......++.. |+.+
T Consensus 181 ~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 181 AAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444443 34565 67899999999994 99999999999999874333588899999999885 9999
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010459 192 EALLFLNEMKEMNLS--PQSDTYDGLI 216 (510)
Q Consensus 192 ~a~~~~~~m~~~g~~--p~~~t~~~li 216 (510)
++.+.+++.+..... |+....|.+-
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 999999999998876 7765555443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.86 E-value=0.93 Score=36.01 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=60.7
Q ss_pred CChhhHHHHHHHHHhcCCC------CcHHHHHHHHHhhcCCCCCHH-HHHHHHHHH------HhcCCHHHHHHHHHHHHh
Q 010459 101 WTKDHFWAVIRFLKNSSRS------RQIPQVFDMWKNIEKSRINEF-NSQKIIGML------CEEGLMEEAVRAFQEMEG 167 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~------~~~g~~~~A~~~~~~m~~ 167 (510)
-|+++|...+...-+.|++ ++.+++|++.. ..++|+.. .|...|..+ ...+++++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi--a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI--EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH--HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH--HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4677888888888888888 78888888776 45566531 122222211 123566666666666654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459 168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207 (510)
Q Consensus 168 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 207 (510)
. .+.=...|-.-..-=.+.|++..|.+++......+.+|
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3 12114444444444455666666666666666655543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.38 E-value=3.4 Score=32.85 Aligned_cols=103 Identities=8% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCccCH----HHHHHHHH---HHHhcCChhHHHHHHHHHHhc
Q 010459 242 PDHITYNLLIQEFACAGLL------KRMEGTYKSMLTKRMHLRS----STMVAILD---AYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~----~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 308 (510)
-|..+|-..+.-.-+.|++ ++..++|++.... ++|+. ..|.-+-- .+...+++++|+++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566666666666666666 6666666665542 34431 01110000 011236677777777766553
Q ss_pred CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459 309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR 346 (510)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
+-.. ..++......-.+.|++..|.+++....++.++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2111 333333333333444444444444333333333
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.08 E-value=1.8 Score=41.11 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGCSPDHITY 247 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 247 (510)
....++..+...|+.++|+..++.+.... .-+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44566777778888888888888776643 23777888888888888888888888887643 4888877664
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.78 E-value=0.016 Score=55.55 Aligned_cols=147 Identities=9% Similarity=-0.024 Sum_probs=94.7
Q ss_pred chHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 010459 347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426 (510)
Q Consensus 347 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 426 (510)
.+.+|..+..++...+...+|.+-|-+.. |...|..+|.+..+.|.+++-..++...++..-.|...| .|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt--eLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH--HHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH--HHHH
Confidence 36667777777777777766655443211 455667778888888888888877776665544444443 6777
Q ss_pred hhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCC--------------------CCCC
Q 010459 427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPY--------------------SREK 486 (510)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p 486 (510)
+|++.++..+-.+++. .|+......+.+-|...|.++.|.-+|..+... ...-
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777666444432 134444555666666666666665555443321 1234
Q ss_pred CcccHHHHHHHHHhcCCCCCCC
Q 010459 487 KRWTYQNLIDLVIKHNGKNLDG 508 (510)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~ 508 (510)
+..||..+-.+|...+.+.+|.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTT
T ss_pred ChhHHHHHHHHHhCchHHHHHH
Confidence 5679999999999999998885
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.56 E-value=1.8 Score=41.16 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCccCHH
Q 010459 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRMHLRSS 280 (510)
Q Consensus 213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 280 (510)
..++..+...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344555556666666666655555432 34555666666666666666666666655432 35555543
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.89 E-value=20 Score=34.55 Aligned_cols=228 Identities=9% Similarity=0.054 Sum_probs=130.6
Q ss_pred CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHhcCCHHH--HHHHHHHHHh--CC-CCC
Q 010459 100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEE--AVRAFQEMEG--FA-LKP 172 (510)
Q Consensus 100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~--A~~~~~~m~~--~g-~~~ 172 (510)
..+......++..|...|+++...+.+..+.+.+|..+...+. +.++.........+. -..+.+.... .| +-.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence 4455677889999999999999988888777645544433332 223333333333322 2222221111 01 111
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC
Q 010459 173 ---SLEIYNSIIHGYSKIGKFNEALLFLNEMKEM--NLSPQ---SDTYDGLIQAYGKYKMYDEIDMCLKMMKL----DGC 240 (510)
Q Consensus 173 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~ 240 (510)
.......|...|-..|++.+|.+++.++... |..+. ...+..-++.|...+++..|..++.++.. ...
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 1223456778889999999999999998543 22211 34667788889999999999999888642 221
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCccCHHHHHH----HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 241 SPD--HITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVA----ILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 241 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
.|+ ..-+..++..+...+++.+|.+.|.+.... .+.-|...+.. ++-...-.+....-..+.....+....++
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~ 292 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKK 292 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccc
Confidence 222 234566777888889999998888777532 11113222222 11122222222222233333333333456
Q ss_pred HHHHHHHHHHHHhh
Q 010459 314 EDLVRKLAEVYIKN 327 (510)
Q Consensus 314 ~~~~~~li~~~~~~ 327 (510)
...+..|+.+|...
T Consensus 293 l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 293 LESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhc
Confidence 67777788887654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.76 E-value=2.4 Score=32.68 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=9.6
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 010459 217 QAYGKYKMYDEIDMCLKMMKL 237 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~ 237 (510)
-++.|.|++++|.+.++.+.+
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.81 E-value=6.3 Score=40.77 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCC-CHH-
Q 010459 143 QKIIGMLCEEGL-MEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGK-FNEALLFLNEMKEM------NLSP-QSD- 210 (510)
Q Consensus 143 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~- 210 (510)
..++..+...|+ .+.|..+|+++.+. .|...+ ...+|..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 444555555555 57788888888765 333322 2233333333322 22344444443221 1111 111
Q ss_pred ---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459 211 ---------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270 (510)
Q Consensus 211 ---------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 270 (510)
..+.=.+.+...|+++.|+++-++..... +-+-.+|-.|...|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111233556788888988888887653 345778999999999999999998888776
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.19 E-value=25 Score=33.88 Aligned_cols=163 Identities=5% Similarity=0.024 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC--HHH
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTK--RMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLK--EDL 316 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~ 316 (510)
..|...|-..|++.+|.+++.++... |..+. ...+...++.|...+++.+|..+...+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665421 21111 23455556666666666666666665431 111111 123
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHhhc--CCchHHHHHHH----HHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459 317 VRKLAEVYIKNYMFSRLDDLGDDLASRI--GRTELVWCLRL----LSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL 390 (510)
Q Consensus 317 ~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 390 (510)
+...+..+...+++.+|.+.+....... ..+...|...+ ....-.+....--.+.........-++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 3444555555566655555544443211 11122221111 11111111111222233333222234677788888
Q ss_pred HHHHcC--CChhHHHHHHHhhh
Q 010459 391 LAYLKM--KDFKHLRVLLSELP 410 (510)
Q Consensus 391 ~~~~~~--g~~~~A~~~~~~m~ 410 (510)
.+|... .+++...+.|....
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 888764 45677777666554
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.08 E-value=47 Score=35.25 Aligned_cols=293 Identities=10% Similarity=-0.038 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCCCcH-HHHH-HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 010459 108 AVIRFLKNSSRSRQI-PQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE--IYNSIIHG 183 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a-~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~ 183 (510)
++.+++..+|--.+. .... +++-+ ..+....-.+.--+....|+.++++.+++.....+-..+.. .-..+--|
T Consensus 344 ~f~Naf~naG~~~D~~l~~~~~Wl~k---~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 344 SVANGFMHAGTTDNSFIKANLPWLGK---AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHTTTTCCCHHHHHCHHHHHH---CCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhcchhhhhc---cchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 566677777755443 2222 22222 12222222223334555666666766666655321011222 22223334
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCC-HHH-HHHHHHH
Q 010459 184 YSKIGKFNEALLFLNEMKEMNL-------SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPD-HIT-YNLLIQE 253 (510)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~-~~~-~~~li~~ 253 (510)
.+..|..+++++++.......- .+....-.+|--+.+-.|. -+++...+..+... .+ ... ..++--|
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALG 497 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMG 497 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHh
Confidence 4455555556665555443210 0111111222222222222 12344444444332 12 111 1112122
Q ss_pred --HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhh
Q 010459 254 --FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY--MNFGMLDKMEKFYKRLLNSRTPLKEDLVR--KLAEVYIKN 327 (510)
Q Consensus 254 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~ 327 (510)
|+..|+.+....++..+.+.. +......+.-++ ...|+.+.+..+.+.+.... .|...--. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 334455555555655554431 222222233333 35566666666666655431 22222222 222344455
Q ss_pred cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-hHHHHHH
Q 010459 328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF-KHLRVLL 406 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 406 (510)
|+.....+++..+......+......+..+....|+.+.+.++++.+.+.+ .|.+.--.++.-+....|.. .++..++
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 555555555554443333333322233334444555555666665555433 33333333333344444443 3556666
Q ss_pred Hhhhh
Q 010459 407 SELPT 411 (510)
Q Consensus 407 ~~m~~ 411 (510)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 66653
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.92 E-value=31 Score=37.94 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=95.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-----------------
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS----------------- 241 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------------- 241 (510)
.++..+.+.+..+.+.++..... -+...-=.+..+|..+|++++|...|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 46666777777777766554432 2333333455667778888888888866421 110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-Cc-cC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 010459 242 ------PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MH-LR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP 311 (510)
Q Consensus 242 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 311 (510)
.-..=|..++..+-+.|.++.+.++-....+.. .. ++ ...|..+.+++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011236677788888888888887766555422 11 11 12578889999999999999988887765543
Q ss_pred CCHHHHHHHHHHHHhhcchhHHHH
Q 010459 312 LKEDLVRKLAEVYIKNYMFSRLDD 335 (510)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~ 335 (510)
-......||...+..+.++....
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhC
Confidence 35667778888887777655443
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.30 E-value=12 Score=28.69 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHH
Q 010459 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR---MEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKM 298 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a 298 (510)
.+..+.+-|.+....| .++..+--.+.-++++.....+ ++.++++....+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444443333 2444444445555555554444 555555555442 11 112222334455555666666
Q ss_pred HHHHHHHHhc
Q 010459 299 EKFYKRLLNS 308 (510)
Q Consensus 299 ~~~~~~m~~~ 308 (510)
++.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6555555543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.90 E-value=7.7 Score=28.32 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
..+-++.+...++.|++....+.+++|-|.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555555444
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.59 E-value=13 Score=27.12 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306 (510)
Q Consensus 259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 306 (510)
+.-+..+-++.+....+-|++....+.++||.+.+++..|.++++-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555556666677777777777777777777777776655
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.05 E-value=17 Score=37.66 Aligned_cols=46 Identities=7% Similarity=-0.071 Sum_probs=36.6
Q ss_pred hhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459 456 DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG 503 (510)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 503 (510)
|..+....-|.+.+++|.+.|+...... -+...+.-|+.-|.+.+.
T Consensus 616 WEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~~ 661 (754)
T 4gns_B 616 WELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPPK 661 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCc
Confidence 6666666778899999999999888754 455588899999988763
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.31 E-value=79 Score=34.70 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=58.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (510)
=|..++..+-+.+.++.+.+.-....+..-+-+ ...|..+..++...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 356778888888888877766655443321111 12578888888888999998888887776543 345677777
Q ss_pred HHHHhcCChhHHH
Q 010459 287 DAYMNFGMLDKME 299 (510)
Q Consensus 287 ~~~~~~g~~~~a~ 299 (510)
...|..|..+.-.
T Consensus 979 ~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 979 NQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHhCCChhhhh
Confidence 7777777665543
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.35 E-value=20 Score=26.02 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459 190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269 (510)
Q Consensus 190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (510)
.++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+. .||.+.|-++-. .+.|..+++..-+.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4555555555544432 11111122223445666666666665555 566666665544 356666666666656
Q ss_pred HHHCC
Q 010459 270 MLTKR 274 (510)
Q Consensus 270 m~~~g 274 (510)
+...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 65554
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.13 E-value=21 Score=25.94 Aligned_cols=78 Identities=12% Similarity=-0.016 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
..++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+. .||.+.|-++-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34556555555555442 11111122233445677777777666665 677777766544 35666666666665
Q ss_pred HHHHCC
Q 010459 269 SMLTKR 274 (510)
Q Consensus 269 ~m~~~g 274 (510)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.89 E-value=17 Score=28.16 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 197 LNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
++.+...++.|++....+.+.+|-+.+++..|.++|+.++
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444455555555555555555555555554444
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.09 E-value=1.1e+02 Score=32.63 Aligned_cols=297 Identities=11% Similarity=0.041 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHH-HHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HH
Q 010459 140 FNSQKIIGMLCEEGLMEEA-VRAF-QEMEGFALKPSLEIYNSI-IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY--DG 214 (510)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A-~~~~-~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ 214 (510)
.+-.++.+++..+|--.+. +... +.+.+. .+-.-+.+. --|....|+.++++.+++.....+-..+..+- ..
T Consensus 340 ~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAl 416 (963)
T 4ady_A 340 HTAVSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL 416 (963)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 3445677888888754333 2222 233332 232233333 33567889999999988877653212233333 34
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCccCHHHHH--H
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLDGC-------SPDHITYNLLIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMV--A 284 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~--~ 284 (510)
+--+...+|..+++..++.......- .+....-.++--|.+-.|. -+++.+.+..+....-. ...... +
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 44455566666678887776554210 0112222233233333342 25666777666654211 111122 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhcchhHHHHHHHHHHhhcCCchHHHHHH--HHHhhh
Q 010459 285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYI--KNYMFSRLDDLGDDLASRIGRTELVWCLR--LLSHAC 360 (510)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--i~~~~~ 360 (510)
+-..+.-.|+.+....++..+.+.. +..+...+.-+++ -.|+-+.+..+.+.+.....+....-.++ ..+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 2233445678788888888777532 3444444544444 56777788877777765544433333333 345666
Q ss_pred hcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc-chHHH
Q 010459 361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG-TGALE 439 (510)
Q Consensus 361 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~~ 439 (510)
.|+.....++++.+.... ..++.....+--++.-.|+.+.+.++++.+.+.+ .|....-..+--+....|.. .++++
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 677666666888887652 2233333333336666788888888888777654 34433333333344445544 57788
Q ss_pred HHHHcC
Q 010459 440 MWKRIG 445 (510)
Q Consensus 440 ~~~~~~ 445 (510)
.+..+.
T Consensus 651 ~L~~L~ 656 (963)
T 4ady_A 651 VLDPLT 656 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887774
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=71.89 E-value=1.1 Score=43.38 Aligned_cols=113 Identities=11% Similarity=-0.059 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHH
Q 010459 383 VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAV 462 (510)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 462 (510)
...|..|-.++.+.+++.+|++-|-+. -|+..|..+|.++.+.|.+++-++++....+. ..+....+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 457889999999999999887755322 26678999999999999999999999866544 3455778899999
Q ss_pred hhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCCCCC
Q 010459 463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF 510 (510)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 510 (510)
|+|.+++.+ |.+.=-.||......+-+-|...|..+-|+-+
T Consensus 126 yAk~~rL~e-------lEefl~~~N~A~iq~VGDrcf~e~lYeAAKil 166 (624)
T 3lvg_A 126 LAKTNRLAE-------LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLL 166 (624)
T ss_dssp HHTSCSSST-------TTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTT
T ss_pred HHhhCcHHH-------HHHHHcCCCcccHHHHHHHHHHccCHHHHHHH
Confidence 999999876 33322457777777888999999999888643
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.82 E-value=33 Score=26.61 Aligned_cols=59 Identities=20% Similarity=0.456 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 157 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
+..+-++.+...++.|++....+.+.+|-+.+|+..|.++|+-.+.+ ..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555555566666666666666666666666666666665443 222333454444
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.25 E-value=19 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010459 179 SIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
.|--|+.+.|++++|.+..+.+++
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333344444444444444444443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.77 E-value=78 Score=29.76 Aligned_cols=166 Identities=9% Similarity=0.014 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH---
Q 010459 105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI---NEFNSQKIIGMLCEE-GLMEEAVRAFQEMEGFALKPSLEIY--- 177 (510)
Q Consensus 105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~--- 177 (510)
....+.+.|.+.|+.++..+++...+.--+.-| ....-..+|+.+... +..+.-.++..+..+..-. +.-+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445677888888888888888876542111122 223456778877765 4444444444444321100 11222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHH
Q 010459 178 ---NSIIHGYSKIGKFNEALLFLNEMKEMNLSP-----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHITY 247 (510)
Q Consensus 178 ---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~ 247 (510)
.-+...|...|++.+|++++.++.+.=-.. -...|-.-+.+|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 257889999999999999998886631111 1334566778888999999999888876532 222333332
Q ss_pred H--HHHH--HHH-HcCCHHHHHHHHHHHH
Q 010459 248 N--LLIQ--EFA-CAGLLKRMEGTYKSML 271 (510)
Q Consensus 248 ~--~li~--~~~-~~g~~~~A~~~~~~m~ 271 (510)
. -... .+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2 1222 234 6788999988876653
No 255
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.30 E-value=7.3 Score=33.44 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFA 169 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g 169 (510)
..++.|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555444444444443
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.92 E-value=50 Score=29.11 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=31.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
...+.|++++|++....-++.... |...-..++.-+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344556666666666555554322 5555556666666666666666666555543
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.58 E-value=33 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
.+...|++++|..+.+.+. .||...|-+|-.+ +.|..+++..-+.++..
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 3444455555555444444 4555555444322 33444444444444433
No 258
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.83 E-value=48 Score=30.69 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM--LDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 324 (510)
.+.+|.-|...|+.++|.+.++++...... ..+....+..+.-+.++ .+...+++..+.+.|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467788888888888888888888643332 23445555555555433 355777777777777766665555555555
Q ss_pred Hhhc----chhHHHHHHHHHH
Q 010459 325 IKNY----MFSRLDDLGDDLA 341 (510)
Q Consensus 325 ~~~~----~~~~a~~~~~~~~ 341 (510)
.... +...|..++..+.
T Consensus 299 ~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 4432 2344444444444
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.46 E-value=47 Score=26.01 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=10.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
.-++.|.|++++|.+..+.+.+.
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc
Confidence 33444444444444444444443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.13 E-value=31 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=20.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459 185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG 239 (510)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 239 (510)
...|++++|+.+.+.+ .-||...|-+|-. .|.|..+++..-+.++...|
T Consensus 50 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444444444443332 2344444444322 24444444444444444433
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.74 E-value=7.2 Score=34.42 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=10.9
Q ss_pred CCChhHHHHHHHhhhhCCCCCC
Q 010459 396 MKDFKHLRVLLSELPTRHVKPD 417 (510)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~ 417 (510)
.|......++.+.+.+.|..|+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3444444455555555555444
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.09 E-value=56 Score=31.16 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHH----H
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL---DGCSPDHI----T 246 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~----~ 246 (510)
++..+...|.+.|+.++|.+.|.++...- ..--...+-.+|+.+...+++..+...+++... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666666777777777776665432 222344556666677777777777776666542 22122211 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459 247 YNLLIQEFACAGLLKRMEGTYKSMLT 272 (510)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (510)
|..+ .+...+++..|...|-+...
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 1111 12345677777777766543
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.57 E-value=56 Score=31.21 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCccCHH----H
Q 010459 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLD--GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT---KRMHLRSS----T 281 (510)
Q Consensus 211 t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~----t 281 (510)
+...+...|.+.|++++|.+.|.++... +...-...+-.+|..+...+++..+...+.+... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999998864 2233456777888999999999999999888753 33333322 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459 282 MVAILDAYMNFGMLDKMEKFYKRLLNS 308 (510)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 308 (510)
|..+ .+...+++..|-+.|-+....
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 2222 233467888888877776543
No 264
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=59.93 E-value=34 Score=31.08 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010459 107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF---NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP 172 (510)
Q Consensus 107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 172 (510)
++.+...++.|+.+.+..+++ .|..+|.. .-.+-+...++.|+.+-+. .+.+.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~-----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~----~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE-----GGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHH-----CCCCCCccCCCCCcCHHHHHHHcCCHHHHH----HHHHcCCch
Confidence 345555567777766655554 56555432 1122344455677765443 344455443
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.18 E-value=52 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=12.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~ 236 (510)
+-.+|.+.++.++|..+++.++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4445555555555555555554
No 266
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.00 E-value=90 Score=28.15 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM--LDKMEKFYKRLLNSRTPLKEDLVRKLA 321 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li 321 (510)
+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+-+.......+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45566666667777777776666532222 12333344444443322 334555666666555554444433333
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.36 E-value=1e+02 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEME 166 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~ 166 (510)
...+|.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566666666777777777776664
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=56.54 E-value=50 Score=26.64 Aligned_cols=95 Identities=9% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC-------
Q 010459 108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE-------FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA--LK------- 171 (510)
Q Consensus 108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~------- 171 (510)
.=++.+...|.++.|.-+.+.+....+..|+. .++..+.+.+...|++..|...|++..+.. +.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44566667777777777777655544444442 245667788888999999999998853210 00
Q ss_pred ---------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459 172 ---------------PSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 172 ---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (510)
.+...---+-.+|.+.+++++|+.+++....
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1112223467789999999999999887633
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=55.25 E-value=70 Score=24.68 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459 172 PSLEIYNSIIHGYSKIGK---FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 238 (510)
|+..+--....++++..+ ..+++.++++..+.+..-....+=-|.-++.|.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344443333334444433 2344455555444331112223333444555555555555555555443
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.08 E-value=69 Score=24.52 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCC
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM--LDKMEKFYKRLLNSRTPL 312 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~ 312 (510)
+.+|.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44555565666666666666555422111 12333333444433321 234555555555555443
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.79 E-value=20 Score=30.47 Aligned_cols=29 Identities=0% Similarity=0.171 Sum_probs=15.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCC
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRIN 138 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (510)
.+...++.|+.+....+++.+.+ .+..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQ-GGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCCCC
Confidence 44445556666666666655544 444433
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.12 E-value=49 Score=28.73 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=12.7
Q ss_pred HHHHhhccCchhHHHHHHh
Q 010459 459 VLAVYGKGHFLRYCEEVYS 477 (510)
Q Consensus 459 li~~~~~~g~~~~A~~~~~ 477 (510)
.+...++.|..+-+..+++
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3455566788877777766
No 273
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.37 E-value=21 Score=29.41 Aligned_cols=21 Identities=0% Similarity=-0.184 Sum_probs=9.2
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 010459 289 YMNFGMLDKMEKFYKRLLNSR 309 (510)
Q Consensus 289 ~~~~g~~~~a~~~~~~m~~~~ 309 (510)
..+.|..+-..-+.+.+.+.+
T Consensus 161 A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 161 VKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp HHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 344455444444444444433
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.62 E-value=1.2e+02 Score=26.14 Aligned_cols=88 Identities=13% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEM--NLSP----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 254 (510)
++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++...-...++.+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45556666666666666555321 1221 111112223332333333345555555533 34455556666777
Q ss_pred HHcCCHHHHHHHHHHHH
Q 010459 255 ACAGLLKRMEGTYKSML 271 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~m~ 271 (510)
.+.|+.++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77888888887775543
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.67 E-value=18 Score=32.26 Aligned_cols=13 Identities=0% Similarity=0.064 Sum_probs=5.7
Q ss_pred HHHHHHHCCCCcC
Q 010459 370 VVREMESAKVRWN 382 (510)
Q Consensus 370 ~~~~m~~~g~~p~ 382 (510)
+.+.+.+.|..|+
T Consensus 210 ~v~~Ll~~gad~~ 222 (285)
T 3kea_A 210 MLQALFKYDINIY 222 (285)
T ss_dssp HHHHHTTSCBCST
T ss_pred HHHHHHHcCCCCC
Confidence 3444444444443
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=49.92 E-value=70 Score=28.16 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=28.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
..+.|++++|......-.+.. +.|...-..++.-+|-.|+++.|.+=++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544443 334555555556666666666665555554443
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.15 E-value=6.8 Score=33.53 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.9
Q ss_pred hcCCHHH
Q 010459 151 EEGLMEE 157 (510)
Q Consensus 151 ~~g~~~~ 157 (510)
+.|+++.
T Consensus 18 ~~g~~~~ 24 (240)
T 3eu9_A 18 QYGIYER 24 (240)
T ss_dssp HTTCHHH
T ss_pred HcCChHH
Confidence 3444433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.91 E-value=1.2e+02 Score=25.28 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 258 GLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
+...++.++|..|...||--. ..-|......+...|++.+|.++|..-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346677888888877765533 44566667777777888888888888777777763
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.46 E-value=59 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 010459 248 NLLIQEFACAGLLKRMEGTYKSML 271 (510)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~m~ 271 (510)
+.+|.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.42 E-value=1.2e+02 Score=24.73 Aligned_cols=153 Identities=10% Similarity=-0.056 Sum_probs=68.1
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
+++..-...+..+.+.+..+....+.+.+ . .+|..+-...+..+++.|+.+..-.+.+ +.. .++...-...
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSA 96 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHH
Confidence 34444444555555555433333333222 1 3455555555566666655433322222 222 3555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
+.++.+.++.+ +...+..+.. .+|..+-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.|.
T Consensus 97 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 97 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGG- 167 (201)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 55666555543 2333333332 2355555555555555554332 222222222 3444444555555555554
Q ss_pred HHHHHHHHHHH
Q 010459 261 KRMEGTYKSML 271 (510)
Q Consensus 261 ~~A~~~~~~m~ 271 (510)
+++...+..+.
T Consensus 168 ~~~~~~L~~~l 178 (201)
T 3ltj_A 168 ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 23333333333
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.93 E-value=1.2e+02 Score=24.84 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459 136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL 215 (510)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 215 (510)
.+|..+-...+..+.+.|+.+ +...+..+.. .+|...-...+.++.+.++.+ +...+.++.. .+|..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 355666666666666666633 3333333332 356666666666666666543 3334444433 2566666667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCh
Q 010459 216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295 (510)
Q Consensus 216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 295 (510)
+.++.+.++.+....+.+.+. .++..+-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 777777776543333333332 466666666677777776643 4444444442 2456666666777777665
Q ss_pred hHHHHHHHHHHh
Q 010459 296 DKMEKFYKRLLN 307 (510)
Q Consensus 296 ~~a~~~~~~m~~ 307 (510)
.++...+..+.+
T Consensus 173 ~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 344444545544
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.67 E-value=14 Score=32.90 Aligned_cols=182 Identities=9% Similarity=-0.027 Sum_probs=77.9
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL---EIYNSIIHGYSK 186 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~ 186 (510)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..++ +.|..++. .-++. +...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN-----AGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH-----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHH
Confidence 334445666555544444 343333322234455556667765544443 34444332 22233 333445
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDT---YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKR 262 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 262 (510)
.|+.+-+.-++ +.|..++... +.+.+...+..|+.+-+..++ +.|..+ +...-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHH
Confidence 56655333333 3344333221 133444555566655444333 333222 21122233444556677665
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 010459 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 314 (510)
+.-+++.-..-... |..-.+..+...+..|+. ++.+.+.+.|..++.
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 55555442221111 111122222333344443 344455566665543
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.83 E-value=32 Score=28.22 Aligned_cols=96 Identities=11% Similarity=-0.044 Sum_probs=38.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
...+..|+.+-+..+++.-...--.+|....+. +...++.|+.+-+..+++.-...--..|..-.+.+..++.......
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence 344455666655555533211000112222222 3334556666544444432200000112223334444433322233
Q ss_pred HHHHHHHHHHhcCCCCC
Q 010459 297 KMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 297 ~a~~~~~~m~~~~~~~~ 313 (510)
.-.++.+.+.+.|..++
T Consensus 156 ~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 156 LYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred hHHHHHHHHHHCCCCCC
Confidence 33566666677776554
No 284
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.58 E-value=27 Score=29.49 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=7.6
Q ss_pred HHHHhcCCHHHHHHHHH
Q 010459 147 GMLCEEGLMEEAVRAFQ 163 (510)
Q Consensus 147 ~~~~~~g~~~~A~~~~~ 163 (510)
...++.|+++....+++
T Consensus 11 ~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 11 CNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33344444444444443
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.82 E-value=46 Score=28.03 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=11.9
Q ss_pred HHHhhccCchhHHHHHHhhcCC
Q 010459 460 LAVYGKGHFLRYCEEVYSSLEP 481 (510)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~ 481 (510)
+....+.|+.+-+..+.+...+
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCcHHHHHHHHHhhhc
Confidence 4455566776666666655444
No 286
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=42.80 E-value=1.2e+02 Score=23.73 Aligned_cols=67 Identities=7% Similarity=-0.156 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 207 PQSDTYDGLIQAYGKYKMY---DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 207 p~~~t~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
|+..|-=.+..++.++.+. .++..+++++...+........--+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444444455554433 345555555554321112222223444666666666666666666654
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.63 E-value=1.2e+02 Score=23.87 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGK--FNEALLFLNEMKEMNLS 206 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 206 (510)
.+.+|.-|...|+.++|.+.++++. .|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666666777777777777765 232 2233334444443222 33455555555555544
No 288
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.31 E-value=47 Score=27.20 Aligned_cols=9 Identities=0% Similarity=-0.396 Sum_probs=3.3
Q ss_pred HHHHHHhCC
Q 010459 161 AFQEMEGFA 169 (510)
Q Consensus 161 ~~~~m~~~g 169 (510)
+.+.+.+.|
T Consensus 57 iv~~Ll~~G 65 (186)
T 3t8k_A 57 ISMFLINKG 65 (186)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 333333333
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.17 E-value=53 Score=29.68 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC--hhHHHHHHHhhhhCCCC
Q 010459 352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD--FKHLRVLLSELPTRHVK 415 (510)
Q Consensus 352 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 415 (510)
..++.-|...|+.++|.+.++++...... ...+..++..+.-+.+. .+....++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 34555566666666666666665432222 13334444444444322 33455566666544433
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.76 E-value=80 Score=25.01 Aligned_cols=54 Identities=6% Similarity=-0.053 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH
Q 010459 365 RGIDSVVREMESAKVRWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (510)
+++.++|..|...|+.-. ..-|..-...+...|++.+|.++|+.-++.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 558899999999887543 456677777788899999999999999988888844
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.41 E-value=1.6e+02 Score=24.16 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=107.1
Q ss_pred CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459 101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI 180 (510)
Q Consensus 101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 180 (510)
+++..-...+..+.+.|..+....+.+ +.. .+|..+-...+.++.+.|+.+.. ..+..+.+ .+|..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~----~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK----DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 444455566677777776433333333 322 46777777888888888875444 44444443 5788888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 260 (510)
+.++.+.++.+ +...+..+.. .|+..+-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 88888888754 4455555543 367777778888888888754 4444444443 5677777778888888886
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 293 (510)
.++...+..+... ++...-...+.++...+
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 4566666666543 35555555555554443
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.79 E-value=96 Score=24.93 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459 365 RGIDSVVREMESAKVRWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419 (510)
Q Consensus 365 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (510)
+.+.++|..|...|+.-. ..-|......+...|++.+|.++|+.-++.+-+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 568889999999987644 4566677777888999999999999999988888654
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.26 E-value=1.1e+02 Score=23.74 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|.---++.+.+.|.+
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4445555433 22233444444444455555555555554444454444445555555543
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.97 E-value=38 Score=32.18 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAFQ 163 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~ 163 (510)
.+...++.|+.+-+..+++
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444455666655544444
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.62 E-value=11 Score=32.80 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 010459 110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN-------SQKIIGMLC--EEGLMEEAVRAFQEME 166 (510)
Q Consensus 110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~m~ 166 (510)
+...++.|+.+....+++.+.+ .+..++... ++.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445567888888888876665 555554332 233433332 5677777777776654
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.40 E-value=13 Score=31.71 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.3
Q ss_pred HHHHhcCCHH
Q 010459 147 GMLCEEGLME 156 (510)
Q Consensus 147 ~~~~~~g~~~ 156 (510)
...++.|+.+
T Consensus 16 ~~A~~~g~~~ 25 (237)
T 3b7b_A 16 HAAAEAGHVD 25 (237)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHcCcHH
Confidence 3334444443
No 297
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.26 E-value=2.6e+02 Score=25.48 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHH
Q 010459 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLA 461 (510)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 461 (510)
|......+-..|.+.+++.+|...|- . |-.+....|..++.-+...+...++--++- .. +-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfia--------------Ra-VL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCA--------------RA-VL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHH--------------HH-HH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHH--------------HH-HH
Confidence 56666677788899999999988873 2 334555777776665544433222222221 11 22
Q ss_pred HhhccCchhHHHHHHhhc
Q 010459 462 VYGKGHFLRYCEEVYSSL 479 (510)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m 479 (510)
-|.-.+++..|..+|+..
T Consensus 196 ~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIF 213 (336)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 344567777877765443
No 298
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=35.26 E-value=2.3e+02 Score=26.22 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHH
Q 010459 107 WAVIRFLKNSSRSRQIPQVFDMW 129 (510)
Q Consensus 107 ~~ll~~~~~~g~~~~a~~~~~~~ 129 (510)
.++|.-|...|+.++|.+.++.+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 45555555555555555555544
No 299
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.17 E-value=97 Score=21.05 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|.--.++.+.+.|.+
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 344454444322 23344443332 3444555555555544444555555555555555443
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.66 E-value=97 Score=23.79 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+.+.|.+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44556554432 234445555444 5556666666666665555555555555666666554
No 301
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.51 E-value=1.2e+02 Score=27.19 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCCCcCHHHH--HHHHHHHHcCCChhHHHHHH
Q 010459 368 DSVVREMESAKVRWNVTTA--NIILLAYLKMKDFKHLRVLL 406 (510)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 406 (510)
..+.+.+.+.|..+|.... .+.+...++.|..+.+..++
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 3455555666655543211 12233345566666555443
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.40 E-value=19 Score=29.72 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=3.9
Q ss_pred HHHHHHHCCC
Q 010459 370 VVREMESAKV 379 (510)
Q Consensus 370 ~~~~m~~~g~ 379 (510)
+.+.+.+.|.
T Consensus 160 ~v~~Ll~~ga 169 (201)
T 3hra_A 160 IVKLLMENGA 169 (201)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 3333344443
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.83 E-value=1.6e+02 Score=22.35 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGK--FNEALLFLNEMKEMNLS 206 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 206 (510)
.+.++.-|...|+.++|.+.++++. .|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666777777777777777765 332 2333344444444322 34555666666655544
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.54 E-value=1.8e+02 Score=22.75 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=38.6
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
+.+.+.|++++ .--..++..+...+..-.|.++++.+.+.+...+..|.---++.+.+.|.+
T Consensus 16 ~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556776643 344456666666666777888888887776666666665566666666654
No 305
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.79 E-value=2.9e+02 Score=24.90 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 010459 278 RSSTMVAILDAYMNFGMLDKMEKFY 302 (510)
Q Consensus 278 ~~~t~~~ll~~~~~~g~~~~a~~~~ 302 (510)
|......+-..|.+.|++.+|+.-|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4445555556666666666665544
No 306
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.65 E-value=2.3e+02 Score=23.66 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459 153 GLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207 (510)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 207 (510)
+...++.++|..|...|+--. ...|-.....+-..|++.+|.++|+.=.+.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666554322 3445555555556666666666666666655555
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.79 E-value=1.1e+02 Score=23.84 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.---++.+.+.|.+
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34455554432 223334444444 455666666666555455555554455555555544
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.60 E-value=1.4e+02 Score=23.13 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
.+.+.+.|+.++..- ..++..+...+..-.|.++++.+.+.+...+..|....|+.+...|-+.
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345677887766544 4566777777778889999999998877778888777778887777654
No 309
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.36 E-value=30 Score=29.93 Aligned_cols=57 Identities=4% Similarity=0.018 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINE-------FNSQKIIGMLCEE---GLMEEAVRAFQEMEG 167 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 167 (510)
.+...++.|+.+....+++.+.. .|..++. .-++ .+...+.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCc
Confidence 34445567777777777776655 5544432 2233 33344444 777766666665543
No 310
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=30.29 E-value=1.8e+02 Score=25.97 Aligned_cols=50 Identities=2% Similarity=-0.081 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEF--NSQKIIGMLCEEGLMEEAVRAF 162 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 162 (510)
.+...++.|+.+....++.. .+..++.. ...+.+...+..|+.+-+..++
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~----~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 78 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP----LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT----TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHh----cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 33444456666666555542 22222211 1223444555666665444443
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.04 E-value=1.1e+02 Score=24.07 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHCCCccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 270 MLTKRMHLRSSTMVAILDAYMNFG-MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 270 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|.+
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44555554432 223444444444 4555666666666655555555555555555565554
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.32 E-value=3.3e+02 Score=24.77 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010459 142 SQKIIGMLCEEGLMEEAVRAFQEME 166 (510)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~ 166 (510)
...++.-|...|++++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455566666666666666666654
No 313
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.19 E-value=88 Score=23.52 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307 (510)
Q Consensus 266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 307 (510)
+|+.+....+.|+...-..-|..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555544444444555566777777777766654
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.71 E-value=1.5e+02 Score=22.61 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 233 KMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 233 ~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
+.+.+.|+.++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-|+.+...|-+.
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34667787766554 35666666666 67889999999998887778888777777777777654
No 315
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.33 E-value=50 Score=27.80 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAFQE 164 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~ 164 (510)
.+...+..|+.+-+..+++.
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444566676666655554
No 316
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=27.44 E-value=3.4e+02 Score=24.39 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH----HHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459 144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL----LFLNEMKEMNLSPQSDTYDGLIQAY 219 (510)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~g~~p~~~t~~~li~~~ 219 (510)
++..=|.+.+++++|++++..-. ..+.+.|+...|- -+.+...+.++++|......|+..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34555777777877777765432 1233445544433 3455566677888888888888777
Q ss_pred HccCCHH-HHHHHHHHH----HhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459 220 GKYKMYD-EIDMCLKMM----KLDGC--SPDHITYNLLIQEFACAGLLKRMEGTYK 268 (510)
Q Consensus 220 ~~~g~~~-~a~~~~~~m----~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (510)
.....-+ .=.++.+++ .+.|- .-|......+-..|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6643211 112333333 23321 2366778888888999999988888764
No 317
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.27 E-value=3.9e+02 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=21.4
Q ss_pred CcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV 419 (510)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (510)
.|+...+..++.+|. .+++.+...++..... .+..|..
T Consensus 253 ~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 253 GRDIDAMKSVAEASH-KRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred CccHHHHHHHHHHHH-hCCHHHHHHHHHHHHH-HHhcChH
Confidence 455556666666654 4566666666665543 2444554
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.08 E-value=2.3e+02 Score=22.33 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459 261 KRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK 313 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 313 (510)
+++.++|..|...||--. ..-|......+...|++.+|.++|..-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 347888888888876543 45677777778888999999999988888887774
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.07 E-value=2.2e+02 Score=22.17 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 233 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
+.+.+.|+.++.. =..++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4466778665443 34667777777778889999999988877778888777778887777543
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.91 E-value=5.9 Score=34.68 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=32.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--ccCCHHHHHHHHHHHH
Q 010459 181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDT-------YDGLIQAYG--KYKMYDEIDMCLKMMK 236 (510)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------~~~li~~~~--~~g~~~~a~~~~~~m~ 236 (510)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4445567777777777777766666555332 234443332 5577666666666543
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.04 E-value=1.5e+02 Score=19.96 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCh
Q 010459 233 KMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML 295 (510)
Q Consensus 233 ~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 295 (510)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 45667787776655 45666666554 5667888888888877667778887788887777754
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.85 E-value=3.7e+02 Score=24.82 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCC
Q 010459 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYGKYKM--YDEIDMCLKMMKLDGCS 241 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 241 (510)
.-..+|.=|...|+.++|.+.++++.. |+ .+.+..+..++ ..++ .+.+..++..+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCC
Confidence 456778888888888888888888743 43 23333333333 3332 24466677777765543
No 323
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.43 E-value=3.9e+02 Score=24.34 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459 312 LKEDLVRKLAEVYIKNYMFSRLDDLG 337 (510)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (510)
-|+.....+-..|.+.+++.+|...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666677777888888887777663
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.27 E-value=1.2e+02 Score=28.50 Aligned_cols=110 Identities=10% Similarity=0.099 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
Q 010459 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD--TYDGLIQAYG 220 (510)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~ 220 (510)
.+...+..|+++-+..+++ .|..|+... ..+.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 4445556677665554443 344443211 123344455666655444433 334332211 1122344445
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 010459 221 KYKMYDEIDMCLKMMKLDGCSPD---HITYNLLIQEFACAGLLKRMEGTY 267 (510)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 267 (510)
+.|+.+-+.-+++. |..++ ...++. +...++.|+.+.+..++
T Consensus 89 ~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 89 RIGHTNMVKLLLEN----NANPNLATTAGHTP-LHIAAREGHVETVLALL 133 (437)
T ss_dssp HHTCHHHHHHHHHH----TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH
T ss_pred HCCCHHHHHHHHhC----CCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH
Confidence 56666554444433 33322 222222 33345566665554444
No 325
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.01 E-value=81 Score=24.64 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.5
Q ss_pred hcCCHHHHHHH
Q 010459 151 EEGLMEEAVRA 161 (510)
Q Consensus 151 ~~g~~~~A~~~ 161 (510)
+.|+.+....+
T Consensus 17 ~~g~~~~v~~l 27 (165)
T 3twr_A 17 KAGDVETVKKL 27 (165)
T ss_dssp HHTCHHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 34444444333
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.89 E-value=44 Score=21.54 Aligned_cols=32 Identities=9% Similarity=0.333 Sum_probs=23.9
Q ss_pred hhHHHHHHhhcCC-CCCCCCcccHHHHHHHH-Hhc
Q 010459 469 LRYCEEVYSSLEP-YSREKKRWTYQNLIDLV-IKH 501 (510)
Q Consensus 469 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~-~~~ 501 (510)
.++|++.|.+|++ .++.|+ +||.-.+..+ +..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDST-WSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCC
Confidence 3688889988887 555554 8999988887 543
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.77 E-value=2.8e+02 Score=22.12 Aligned_cols=51 Identities=6% Similarity=0.010 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 010459 152 EGLMEEAVRAFQEMEGFALKP--SLEIYNSIIH-G-----YSKIGKFNEALLFLNEMKE 202 (510)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 202 (510)
.|++-+|.++|++.-+..-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776554344 4456666666 2 2346777777777776643
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.54 E-value=57 Score=27.37 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=11.6
Q ss_pred HHHHHHhcCCCCcHHHHHH
Q 010459 109 VIRFLKNSSRSRQIPQVFD 127 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~ 127 (510)
.+...++.|+.+....+++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 9 MICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHH
Confidence 4555566677666666655
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.52 E-value=2.7e+02 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 010459 212 YDGLIQAYGKYKMYDEIDMCLKMMK 236 (510)
Q Consensus 212 ~~~li~~~~~~g~~~~a~~~~~~m~ 236 (510)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3667777777777777777777775
No 330
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.06 E-value=54 Score=22.82 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=20.6
Q ss_pred hhHHHHHHhhcCC-CCCCCCcccHHHHHHHHHhc
Q 010459 469 LRYCEEVYSSLEP-YSREKKRWTYQNLIDLVIKH 501 (510)
Q Consensus 469 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~ 501 (510)
.++|...|..|+. .++.|+ .+|...+......
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccC
Confidence 4667777777766 556655 6777766655443
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.02 E-value=2.4e+02 Score=23.97 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 010459 263 MEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL 312 (510)
Q Consensus 263 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 312 (510)
+.++|..|...||--. ..-|......+...|++.+|.++|..-++.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 332
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.74 E-value=1.6e+02 Score=22.10 Aligned_cols=43 Identities=7% Similarity=-0.121 Sum_probs=24.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459 231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK 273 (510)
Q Consensus 231 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (510)
+|+.+....+.|++..--.-|..+...++++.|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4455555555555444444455556667777777776666543
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.63 E-value=1.1e+02 Score=23.38 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF 330 (510)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 330 (510)
.++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34444444455555666666665555445555555555555555544
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.41 E-value=1.9e+02 Score=22.48 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
-+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-|+.+...|-+.
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345666787776654 45566666666 6789999999988877778777777777777776543
No 335
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=22.40 E-value=4.3e+02 Score=23.78 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459 177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD 213 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 213 (510)
|-.++-++....-...|..+.+.|. |...|..++.
T Consensus 78 f~~ll~~l~~~~~~~dA~~l~~A~k--g~Gtde~~li 112 (321)
T 1n00_A 78 FERLVLLWALDPAERDALLANEATK--RWTSSNQVLM 112 (321)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHS--SSCSSCHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHhh--ccCCCHHHHH
Confidence 4445555554333455666666663 3334554433
No 336
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=22.37 E-value=4.3e+02 Score=23.76 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459 401 HLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI 444 (510)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 444 (510)
.|..+++.|...| .|..++..++-.- ...+.....+.|++.
T Consensus 250 ~A~~L~~a~~g~G--td~~~Lirilv~R-se~dl~~Ik~~y~~~ 290 (320)
T 1yii_A 250 FAETLYYSMKGAG--TDDDTLIRVMVSR-SEIDLLDIRHEFRKN 290 (320)
T ss_dssp HHHHHHHHHSSSS--CCHHHHHHHHHHH-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhccCC--CcHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 5777777776543 4666555555431 223455555555554
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.95 E-value=1.8e+02 Score=22.68 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 232 LKMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 232 ~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
.+.+.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-|+.+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456778877666543 5566666665 67789999999998877778888777777777777654
No 338
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.89 E-value=57 Score=28.38 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 010459 109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI-------NEFNSQKIIGMLC--EEGLMEEAVRAFQEME 166 (510)
Q Consensus 109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 166 (510)
.+...++.|+.+....+++.... .+... |..-++.|..+.. +.|+.+-+..+++.-.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQR-SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHH-SCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhh-cccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 44445678899988888887654 33322 2333444544443 3478777777777643
No 339
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.87 E-value=3.2e+02 Score=24.17 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=54.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC---HHHHHHHHHHHH
Q 010459 214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR---SSTMVAILDAYM 290 (510)
Q Consensus 214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~ 290 (510)
.-+...++.|+.+....++......--..|..-++ .+...+..|+.+-+. .+.+.|..++ ....+. +...+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKST-PLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVP-LHNAC 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCH-HHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcH-HHHHH
Confidence 34445567788888887776422110112333333 344456777765444 4445565443 222333 34445
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhhcchhHHHHH
Q 010459 291 NFGMLDKMEKFYKRLLNSRTPLKEDL--VRKLAEVYIKNYMFSRLDDL 336 (510)
Q Consensus 291 ~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~ 336 (510)
..|+.+ +.+.+.+.|..++... ..+.+...+..|..+-+..+
T Consensus 100 ~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 143 (351)
T 3utm_A 100 SYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143 (351)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 566654 4555556665554321 11223333455555544444
No 340
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.67 E-value=3.2e+02 Score=21.97 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459 137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI 216 (510)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 216 (510)
+|..+-...+..+.+.|+.+....+.+.+. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 555555556666666665433333333332 456666666777777777653 3444444443 35777777777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459 217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296 (510)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 296 (510)
.++.+.++.+....+.+.+. .++..+-...+.+..+.++. .+...+..+... ++...-...+.++...|. .
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-h
Confidence 78888777554444444333 56766666777777777764 344444444432 466666777777777766 3
Q ss_pred HHHHHHHHHHh
Q 010459 297 KMEKFYKRLLN 307 (510)
Q Consensus 297 ~a~~~~~~m~~ 307 (510)
++...+..+.+
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 45555555544
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.16 E-value=1.2e+02 Score=25.83 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=15.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 010459 251 IQEFACAGLLKRMEGTYKSMLTKRMHL 277 (510)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~m~~~g~~p 277 (510)
+...++.|+.+....+++.+...|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334456666666666666665555443
No 342
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.12 E-value=3.9e+02 Score=22.80 Aligned_cols=88 Identities=9% Similarity=-0.011 Sum_probs=57.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 010459 215 LIQAYGKYKMYDEIDMCLKMMKLD--GCSP----DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA 288 (510)
Q Consensus 215 li~~~~~~g~~~~a~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 288 (510)
-++.+....++++|..++++..+. ++++ +...-...+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 567888899999999999887642 2221 112223344444444444555566666633 4466677778899
Q ss_pred HHhcCChhHHHHHHHHH
Q 010459 289 YMNFGMLDKMEKFYKRL 305 (510)
Q Consensus 289 ~~~~g~~~~a~~~~~~m 305 (510)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 99999999999998554
No 343
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.89 E-value=1e+02 Score=28.08 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459 178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257 (510)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 257 (510)
.+.+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+..+++.-. .++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHH-------------------HHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCHHH
Q 010459 258 GLLKRMEGTYKSMLTKRMHLRSSTM-------------------VAILDAYMNFG--MLDKMEKFYKRLLNSRTPLKEDL 316 (510)
Q Consensus 258 g~~~~A~~~~~~m~~~g~~p~~~t~-------------------~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~ 316 (510)
|+.+-+..+++.-...|..|+.... .+.+...+..| +.+-+..+++. ...+......
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~ 172 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKA 172 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCC
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHh-----hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHH--HH
Q 010459 317 VRKLAEVYIKNYMFSRLDDLGDDLAS-----RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTAN--II 389 (510)
Q Consensus 317 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l 389 (510)
..+.+...+..|..+-+..++..-.. ....+..-++.+..+..... .++.+.+.+.|..++..... +-
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~tp 247 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTVP 247 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCH
Q ss_pred HHHHHcCCChhHHHHHHHh
Q 010459 390 LLAYLKMKDFKHLRVLLSE 408 (510)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~ 408 (510)
+...++.|+.+-+..+++.
T Consensus 248 L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 248 LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHc
No 344
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.66 E-value=3.7e+02 Score=22.35 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCC
Q 010459 187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM-----YDEIDMCLKMMKLDGC 240 (510)
Q Consensus 187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~ 240 (510)
..+++.|+-.+-+|.+.| .|.-..-..++.+.-..|. +..|...++.....|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 445555666666666655 4444333444444433332 2234444444444443
No 345
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.42 E-value=3.3e+02 Score=21.75 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 010459 261 KRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED 315 (510)
Q Consensus 261 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 315 (510)
+++.++|..|...||--. ..-|......+...|++.+|.++|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 347778999988876544 4567777777888899999999999998888888543
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.01 E-value=26 Score=30.69 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHH--ccCCHHHHHHHHHHH
Q 010459 182 HGYSKIGKFNEALLFLNEMKEMNLSP-------QSDTYDGLIQAYG--KYKMYDEIDMCLKMM 235 (510)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~t~~~li~~~~--~~g~~~~a~~~~~~m 235 (510)
...++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.-
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 33455677777766776666555332 2233344444443 246666665555553
Done!