BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010460
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/526 (52%), Positives = 361/526 (68%), Gaps = 21/526 (3%)
Query: 3 IENFKVESPNVKYTDHEIHSVYDYETTELVHENRNGTYQWIVKPKTVKYEFKTDVHVP-K 61
I + KV + Y D+E+ + Y YE +V + +G + V P Y FK D+ P K
Sbjct: 9 ITSVKVVTDKCTYKDNELLTKYSYENA-VVTKTASGRFD--VTPTVQDYVFKLDLKKPEK 65
Query: 62 LGVMLVGWGGNNGSTLTGGVISNREGISWATKDTVQQANYFGSLTQASAIRVG-SYNGEE 120
LG+ML+G GGNNGSTL V++N+ + + TK+ V+Q NYFGS+TQ S +++G G +
Sbjct: 66 LGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGND 125
Query: 121 IYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGI 180
+YAPF S+LPMV+P+D V GWDI++ +L +AM R++V + DLQ++L+ M + PLP I
Sbjct: 126 VYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSI 185
Query: 181 YDPDFIAANQGSRANNVI----KGT-----KKEQMLQIIKDIREFKEKNKVDRVVVLWTA 231
Y PDFIAANQ RANN I KG K + +I +DI+ FKE+N +D+V+VLWTA
Sbjct: 186 YYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTA 245
Query: 232 NTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGL 291
NTERY V G+NDT+ENLL S+ + EI+PST++A A +LE +P+INGSPQNTFVPGL
Sbjct: 246 NTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGL 305
Query: 292 IDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQT 351
+ LA I GDD KSGQTK+KSVL FLV AGIKP SI SYNHLGNNDG NLSAP+
Sbjct: 306 VQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQ 365
Query: 352 FRSKEISKSNVVDDMVSSNGILYGP--GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMG 409
FRSKEISKS+V+DD+++SN ILY G+ DH +VIKY+ VGDSK AMDEY SE+ +G
Sbjct: 366 FRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLG 425
Query: 410 GKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLK-----AEGEGKFHSFHPVATILS 464
G N I +HN CEDSLLA P+++DL+++ E TR+ K E GKF +F+PV T LS
Sbjct: 426 GHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLS 485
Query: 465 YLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510
Y KAPL PG VN L+KQR LEN LR +GL +N + E +
Sbjct: 486 YWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEER 531
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/505 (54%), Positives = 364/505 (72%), Gaps = 9/505 (1%)
Query: 8 VESPNVKYTDHEIHSVYDYETTELVHENRNGTYQWIVKPKTVKYEFKTDVHVPKLGVMLV 67
VESPNVK D + S + Y H +G + V PK Y FKT + K G++LV
Sbjct: 27 VESPNVKLEDGVLESRFTYRKNHFEHR-ADGLH---VTPKEHDYSFKTVLKPRKTGLLLV 82
Query: 68 GWGGNNGSTLTGGVISNREGISWATKDTVQQANYFGSLTQASAIRVG--SYNGEEIYAPF 125
G GGNNGST G + +N+ ++W TK+ QANYFGS+TQ + + +G S +I+ PF
Sbjct: 83 GLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPF 142
Query: 126 KSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDF 185
K I+P+++P+D++ GWDISD NL +AM RA+VF+ +LQ++LRP+ME +VPLP IY PDF
Sbjct: 143 KDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYYPDF 202
Query: 186 IAANQGSRANNVIKGTKKEQMLQIIK-DIREFKEKNKVDRVVVLWTANTERYSNVIVGLN 244
IA+NQG RANNVI G K + L+ I+ DIR+FK++++++ V+VLWTANTERY++V GLN
Sbjct: 203 IASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 262
Query: 245 DTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGG 304
T + ++ S+ NE E+SPS ++A+A +LE +INGSPQNT VPGLI+LA R +GG
Sbjct: 263 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGG 322
Query: 305 DDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVD 364
DDFKSGQTK KS VDFLV +G+KP SIVSYNHLGNNDG NLS + FRSKEISKS+VVD
Sbjct: 323 DDFKSGQTKFKSAFVDFLVSSGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVD 382
Query: 365 DMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSL 424
DMV SN IL+ ++PD+ VVIKYVPYV DSKRAMDEY IFMGGK T V+HNTCEDSL
Sbjct: 383 DMVKSNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSL 442
Query: 425 LAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSK 484
LA+P++ DL +L EL++R+ K + E + FH V +ILS L KAP+VPPGTP+ NA +
Sbjct: 443 LASPLIYDLAILTELASRVSYKVDDE--YKPFHSVLSILSLLLKAPVVPPGTPISNAFMR 500
Query: 485 QRAMLENILRACVGLAPENNMILEY 509
Q + L ++ A G + +M +E+
Sbjct: 501 QFSTLTKLVTALAGFPSDTDMQIEF 525
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/526 (51%), Positives = 352/526 (66%), Gaps = 21/526 (3%)
Query: 3 IENFKVESPNVKYTDHEIHSVYDYETTELVHENRNGTYQWIVKPKTVKYEFKTDVHVP-K 61
I + KV + Y D+E+ + Y YE +V + +G + V P Y FK D+ P K
Sbjct: 9 ITSVKVVTDKCTYKDNELLTKYSYENA-VVTKTASGRFD--VTPTVQDYVFKLDLKKPEK 65
Query: 62 LGVMLVGWGGNNGSTLTGGVISNREGISWATKDTVQQANYFGSLTQASAIRVG-SYNGEE 120
LG+ L+G GGNNGSTL V++N+ + + TK+ V+Q NYFGS TQ S +++G G +
Sbjct: 66 LGIXLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSXTQCSTLKLGIDAEGND 125
Query: 121 IYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGI 180
+YAPF S+LP V+P+D V GWDI++ +L +A R++V + DLQ++L+ + PLP I
Sbjct: 126 VYAPFNSLLPXVSPNDFVVSGWDINNADLYEAXQRSQVLEYDLQQRLKAKXSLVKPLPSI 185
Query: 181 YDPDFIAANQGSRANNVI----KGT-----KKEQMLQIIKDIREFKEKNKVDRVVVLWTA 231
Y PDFIAANQ RANN I KG K + +I +DI+ FKE+N +D+V+VLWTA
Sbjct: 186 YYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTA 245
Query: 232 NTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGL 291
NTERY V G+NDT ENLL S+ + EI+PST++A A +LE +P+INGSPQNTFVPGL
Sbjct: 246 NTERYVEVSPGVNDTXENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGL 305
Query: 292 IDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQT 351
+ LA I GDD KSGQTK+KSVL FLV AGIKP SI SYNHLGNNDG NLSAP+
Sbjct: 306 VQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQ 365
Query: 352 FRSKEISKSNVVDDMVSSNGILYGP--GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMG 409
FRSKEISKS+V+DD+++SN ILY G+ DH +VIKY VGDSK A DEY SE+ +G
Sbjct: 366 FRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYXKPVGDSKVAXDEYYSELXLG 425
Query: 410 GKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLK-----AEGEGKFHSFHPVATILS 464
G N I +HN CEDSLLA P+++DL++ E TR+ K E GKF +F+PV T LS
Sbjct: 426 GHNRISIHNVCEDSLLATPLIIDLLVXTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLS 485
Query: 465 YLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510
Y KAPL PG VN L+KQR LEN LR +GL +N + E +
Sbjct: 486 YWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEER 531
>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild Type
pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild- Type With The Intermediate 5-Keto
1-Phospho Glucose
Length = 392
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 154/334 (46%), Gaps = 44/334 (13%)
Query: 116 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 170
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 171 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 222
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 223 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 281
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 282 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 340
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 341 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 400
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 401 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLV 434
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDIA 344
>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K367a
Length = 392
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 154/334 (46%), Gaps = 44/334 (13%)
Query: 116 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 170
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 171 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 222
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 223 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 281
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 282 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 340
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 341 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 400
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 401 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLV 434
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDIA 344
>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K278a
Length = 392
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 44/334 (13%)
Query: 116 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 170
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 171 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 222
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 223 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 281
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 282 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 340
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SYN LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNILGD 259
Query: 341 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 400
DG LSA SK +S V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSADKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 401 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLV 434
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDIA 344
>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
Length = 392
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 44/334 (13%)
Query: 116 YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARA-----RVFDIDLQKQLRPY 170
+ G E YAPF FGG +I ++ A A+ R FD ++ + ++
Sbjct: 40 FEGIEKYAPF----------SFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSD 89
Query: 171 MESMVPLPGIYDPDFIAANQGSRANNV-----IKG---TKKEQMLQIIKDIREFKEKNKV 222
+E +V G A N GS + ++G + E + +I +DI+ F +
Sbjct: 90 LEGIVARKGT------ALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD---- 139
Query: 223 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEI-SPSTLYAIACVLENIPFING 281
D VV+ A+TE N + ++E +D++ E S S LYA A + +P+ N
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAALKLGLPYANF 199
Query: 282 SPQ-NTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 340
+P + +P L +LA ++ G+D K+G+T +K+ L ++ +SY LG+
Sbjct: 200 TPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYAILGD 259
Query: 341 NDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 400
DG LSA SK +SK V++ M+ G P + I+Y P + D+K A D
Sbjct: 260 YDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFD 310
Query: 401 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLV 434
+ F+G D+++AAP++LD+
Sbjct: 311 FVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDIA 344
>pdb|3N6H|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6J|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3PFR|A Chain A, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|B Chain B, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|C Chain C, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|D Chain D, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
Length = 455
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 373 LYGPGEHPDHVVVIKYVPYVGDSK 396
L GPG+ D V V+ Y+ YVGD K
Sbjct: 136 LLGPGKQRDEVTVLGYLFYVGDDK 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,878,427
Number of Sequences: 62578
Number of extensions: 695952
Number of successful extensions: 1670
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1635
Number of HSP's gapped (non-prelim): 11
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)