Query 010460
Match_columns 510
No_of_seqs 210 out of 473
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 00:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0693 Myo-inositol-1-phospha 100.0 5E-208 1E-212 1558.7 36.5 507 1-510 3-510 (512)
2 PLN02438 inositol-3-phosphate 100.0 6E-195 1E-199 1519.7 52.3 510 1-510 1-510 (510)
3 PF07994 NAD_binding_5: Myo-in 100.0 2.6E-90 5.7E-95 696.4 21.0 289 62-494 1-295 (295)
4 COG1260 INO1 Myo-inositol-1-ph 100.0 6.9E-78 1.5E-82 611.1 26.2 353 58-494 2-361 (362)
5 TIGR03450 mycothiol_INO1 inosi 100.0 2.8E-73 6.1E-78 577.7 19.0 234 233-493 109-351 (351)
6 PF01658 Inos-1-P_synth: Myo-i 100.0 1.3E-45 2.8E-50 326.1 8.1 112 310-423 1-112 (112)
7 cd00423 Pterin_binding Pterin 80.0 14 0.00029 37.2 9.8 123 207-332 24-169 (258)
8 PRK04452 acetyl-CoA decarbonyl 73.9 5.5 0.00012 42.0 5.3 176 110-333 26-207 (319)
9 TIGR01496 DHPS dihydropteroate 73.7 26 0.00056 35.6 9.8 97 206-306 22-125 (257)
10 TIGR01285 nifN nitrogenase mol 69.7 16 0.00036 39.5 7.9 119 218-337 191-345 (432)
11 PRK06349 homoserine dehydrogen 67.5 43 0.00093 36.3 10.5 130 203-334 16-156 (426)
12 cd00739 DHPS DHPS subgroup of 66.8 48 0.001 33.7 10.1 97 207-306 24-127 (257)
13 PRK12301 bssS biofilm formatio 64.3 5.1 0.00011 34.7 2.1 15 140-154 14-28 (84)
14 PRK06270 homoserine dehydrogen 58.0 20 0.00044 37.6 5.7 69 264-334 107-177 (341)
15 PF00809 Pterin_bind: Pterin b 57.9 38 0.00082 33.1 7.3 131 200-333 12-167 (210)
16 PRK11613 folP dihydropteroate 53.1 37 0.00081 35.3 6.6 108 193-304 24-138 (282)
17 PRK08374 homoserine dehydrogen 51.9 1.4E+02 0.0031 31.4 10.8 130 203-334 15-174 (336)
18 cd00381 IMPDH IMPDH: The catal 51.5 84 0.0018 33.0 9.0 60 263-327 144-220 (325)
19 PF01081 Aldolase: KDPG and KH 51.1 10 0.00022 37.3 2.1 33 268-303 73-105 (196)
20 PRK07114 keto-hydroxyglutarate 51.1 15 0.00032 36.8 3.3 64 261-336 79-142 (222)
21 PRK06015 keto-hydroxyglutarate 51.0 15 0.00033 36.3 3.3 62 268-339 69-130 (201)
22 TIGR01182 eda Entner-Doudoroff 49.4 16 0.00035 36.2 3.2 67 261-339 68-134 (204)
23 PRK06552 keto-hydroxyglutarate 49.1 17 0.00036 36.1 3.3 56 268-333 81-136 (213)
24 COG0773 MurC UDP-N-acetylmuram 49.1 7.7 0.00017 42.9 1.0 81 253-349 75-164 (459)
25 cd01966 Nitrogenase_NifN_1 Nit 47.9 2.9E+02 0.0063 29.9 12.6 199 133-336 57-333 (417)
26 COG1647 Esterase/lipase [Gener 47.3 36 0.00079 34.8 5.3 71 124-199 107-196 (243)
27 COG1168 MalY Bifunctional PLP- 44.0 23 0.00049 38.5 3.5 67 276-342 160-241 (388)
28 TIGR00284 dihydropteroate synt 38.4 1E+02 0.0022 34.7 7.5 110 207-327 165-280 (499)
29 PRK13753 dihydropteroate synth 37.4 82 0.0018 32.9 6.2 104 195-302 13-122 (279)
30 COG2513 PrpB PEP phosphonomuta 37.4 75 0.0016 33.5 5.9 140 146-333 92-234 (289)
31 PRK05718 keto-hydroxyglutarate 36.6 35 0.00076 33.9 3.4 58 268-336 80-138 (212)
32 COG0800 Eda 2-keto-3-deoxy-6-p 35.1 38 0.00082 34.1 3.3 70 261-342 73-142 (211)
33 PRK06740 histidinol-phosphatas 33.4 1.2E+02 0.0026 31.9 6.9 65 268-334 245-322 (331)
34 cd03466 Nitrogenase_NifN_2 Nit 33.3 2.5E+02 0.0055 30.4 9.5 120 213-334 173-331 (429)
35 TIGR00381 cdhD CO dehydrogenas 33.0 1.6E+02 0.0034 32.4 7.7 41 109-154 91-131 (389)
36 PF04705 TSNR_N: Thiostrepton- 32.3 20 0.00043 32.6 0.7 29 271-302 43-76 (115)
37 cd01968 Nitrogenase_NifE_I Nit 30.3 1.2E+02 0.0027 32.3 6.5 18 316-333 174-191 (410)
38 PF07878 DUF1662: Protein of u 29.9 48 0.001 26.7 2.5 33 288-328 18-50 (55)
39 PRK14476 nitrogenase molybdenu 29.2 2.1E+02 0.0045 31.5 8.0 122 213-336 187-344 (455)
40 TIGR03498 FliI_clade3 flagella 29.2 79 0.0017 34.6 4.8 25 214-238 186-210 (418)
41 PRK07535 methyltetrahydrofolat 28.6 1.5E+02 0.0032 30.3 6.4 72 262-333 76-158 (261)
42 TIGR00048 radical SAM enzyme, 28.3 2.7E+02 0.0058 29.8 8.5 39 205-252 240-278 (355)
43 PRK04165 acetyl-CoA decarbonyl 27.9 5.3E+02 0.012 28.8 10.9 27 118-146 77-103 (450)
44 TIGR03151 enACPred_II putative 25.2 4E+02 0.0088 27.7 9.0 16 205-220 46-61 (307)
45 PRK06813 homoserine dehydrogen 24.5 2.5E+02 0.0055 30.0 7.4 71 262-334 102-174 (346)
46 PF13500 AAA_26: AAA domain; P 24.2 43 0.00094 31.6 1.6 33 298-330 1-33 (199)
47 TIGR03496 FliI_clade1 flagella 23.7 1.3E+02 0.0029 32.8 5.3 108 213-329 182-326 (411)
48 PRK09466 metL bifunctional asp 23.7 6.4E+02 0.014 30.1 11.2 132 202-335 470-629 (810)
49 COG1548 Predicted transcriptio 23.3 69 0.0015 33.8 2.8 64 142-227 221-284 (330)
50 PF13890 Rab3-GTPase_cat: Rab3 23.1 1.9E+02 0.0042 28.1 5.7 76 99-222 8-86 (164)
51 cd01965 Nitrogenase_MoFe_beta_ 22.5 5.6E+02 0.012 27.6 9.7 124 212-336 173-332 (428)
52 PRK08392 hypothetical protein; 22.1 1.6E+02 0.0035 28.6 5.1 62 268-333 143-210 (215)
53 COG0771 MurD UDP-N-acetylmuram 20.2 3.5E+02 0.0077 30.1 7.7 70 258-339 76-147 (448)
No 1
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-208 Score=1558.69 Aligned_cols=507 Identities=84% Similarity=1.292 Sum_probs=501.7
Q ss_pred CCccceEEeCCCeEecCceEEEEeEeeceEEEEecCCCeeeEEEeeeeeEEEEEecccCCeEEEEEecCCCchhHHHHHH
Q 010460 1 MFIENFKVESPNVKYTDHEIHSVYDYETTELVHENRNGTYQWIVKPKTVKYEFKTDVHVPKLGVMLVGWGGNNGSTLTGG 80 (510)
Q Consensus 1 m~~~~~~v~s~~~~~~~~~i~~~y~y~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~k~GvmlvG~gGn~~TT~~ag 80 (510)
|++++|+|+||||+|+|++|+|+|+|+||+|+++ ++| +|.|+|++++|.|||++++||+||||||||||||||++|+
T Consensus 3 ~~i~s~~Vesp~v~y~d~~i~s~y~Y~t~~v~~~-a~~--~~~V~P~~~~y~fkt~~~vpklGvmLvG~GGNNGSTlta~ 79 (512)
T KOG0693|consen 3 MFIESFKVESPNVKYTDNEIESVYDYETTEVVHE-ADG--NLDVTPKTVDYDFKTDLKVPKLGVMLVGWGGNNGSTLTAS 79 (512)
T ss_pred CccceeEEeCCCceeccceeeeeeeeeeeEEEEe-cCc--eeEeccceEEEEEeecccCCcceEEEEEecCCCcceeehh
Confidence 7889999999999999999999999999999998 778 8999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccccccccccCccccceeeccc-CCCcccccccccCCCCCCCCCeeeeeccCCCCCHHHHHHHCCCC
Q 010460 81 VISNREGISWATKDTVQQANYFGSLTQASAIRVGS-YNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVF 159 (510)
Q Consensus 81 ~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~rlg~-~~~~~~~~p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~ra~Vl 159 (510)
++|||+|++|+||+|+|+||||||+||+||++||. .+|+++|+|||++|||++|||+||+|||||++||+|||.||+||
T Consensus 80 v~ANr~~~~w~tkegv~qaNyfGSlTQastv~lG~da~g~eiy~Pfk~llPmv~Pnd~v~~GWDIs~~nL~eAM~RakVl 159 (512)
T KOG0693|consen 80 VIANREGISWATKEGVQQANYFGSLTQASTVRLGSDANGNEIYAPFKSLLPMVSPNDLVFSGWDISDMNLAEAMARAKVL 159 (512)
T ss_pred hhhccccccccccccccccccceeeeeeeEEEeeecCCCCEEEeEHHHhCCccCccceEEccccCCCCcHHHHHhhhhcc
Confidence 99999999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHhhhhcCCCCCCCChhhhhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCccccc
Q 010460 160 DIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNV 239 (510)
Q Consensus 160 ~~~l~~~l~~~l~~~~p~p~v~~~~fia~nq~~ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~ 239 (510)
|++||+||||+|+.++|+||||||||||+||++||+||++|++.||+||||+|||+||++|+||+||||||||||||+++
T Consensus 160 d~~LQ~ql~p~me~~~PlPsIy~PdFIAaNQ~~RAnnvI~g~~keqle~Ir~Dir~Fke~~~ldkViVLWTANTERy~~V 239 (512)
T KOG0693|consen 160 DIDLQKQLRPFMENLVPLPSIYDPDFIAANQGSRANNVIKGTKKEQLEQIRKDIREFKEENKLDKVIVLWTANTERYSNV 239 (512)
T ss_pred CHHHHHHHHHHHhhccCCCcccCcchhhcCccccccccccCchHHHHHHHHHHHHHHHHhcCCceEEEEEecCcceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHH
Q 010460 240 IVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLV 319 (510)
Q Consensus 240 ~~~~~dt~e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa 319 (510)
.+|+|||+|+|+++|+.++.|||||++||.|||+||||||||||||||+||++|||++++++|+|||||||||||||+|+
T Consensus 240 ~~GlNdT~enl~~si~~~~~EisPStifA~AsilEg~~yiNGSPQNTfVPGlielA~~~~vfigGDDfKSGQTK~KSvlv 319 (512)
T KOG0693|consen 240 IPGLNDTAENLLESIEKDESEISPSTIFAIASILEGCPYINGSPQNTFVPGLIELAERHNVFIGGDDFKSGQTKMKSVLV 319 (512)
T ss_pred ccccchHHHHHHHHHhcCccccChHHHHHHHHHHcCCCcccCCCccccchhHHHHHHHhCceeccccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcCCccCCCCCCCcceeeecccCCCCCceEEE
Q 010460 320 DFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAM 399 (510)
Q Consensus 320 ~~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~~~Ly~~g~~~dh~v~I~YvP~lGD~K~A~ 399 (510)
+||+++||||+||+||||||||||+|||+|+||||||||||||||||++||.+||.||+||||||+||||||+||+||||
T Consensus 320 dFLVgaGiKp~SIvSYNHLGNNDG~NLSap~qFRSKEISKSnVvDDmv~SN~iLy~pge~pDH~vVIKYvpyVgDSKrAm 399 (512)
T KOG0693|consen 320 DFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQQFRSKEISKSNVVDDMVASNGILYEPGEHPDHCVVIKYVPYVGDSKRAM 399 (512)
T ss_pred HHHhccCCCceeEeeeccccCCCcccccchhhhhhhhcchhhhhHHHHhcCCcccCCCCCCCeEEEEEecccccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCeEEEEEEeeecccccchhHHHhHHHHHHHHHHhhhhhccCCcccccccchhhhhhhccCCCCCCCCCcc
Q 010460 400 DEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVV 479 (510)
Q Consensus 400 De~~~e~flG~~~tI~i~~~ceDSlLAAPLilDLvrlaela~r~~~~~~~~~~~~~~~~V~s~lSy~fKaP~~~~g~~~~ 479 (510)
|||++|+||||++||++||+||||+|||||||||++|+|||+|++|+..++..+..||+|+++|||++|+|++|||+|++
T Consensus 400 DEYtsei~mGG~ntiviHNtCEDSLLA~PlilDL~lltEl~tRvs~k~~de~k~~~FhpVltlLSyl~KAPlvppGtpvv 479 (512)
T KOG0693|consen 400 DEYTSEIFMGGKNTIVIHNTCEDSLLAAPLILDLVLLTELSTRVSFKAEDEGKFHSFHPVLTLLSYLLKAPLVPPGTPVV 479 (512)
T ss_pred HHHHHHHhhCCcceEEEeccchHhhhhhhHHHHHHHHHHHhhheEeeecCCCCccccccHHHHHHHHhcCCcCCCCcchh
Confidence 99999999999999999999999999999999999999999999999877778888999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCccccccC
Q 010460 480 NALSKQRAMLENILRACVGLAPENNMILEYK 510 (510)
Q Consensus 480 n~l~~Q~~~L~n~lra~~gl~~~~~~~le~~ 510 (510)
|+|++||++|||++|+|+||||+|||.||||
T Consensus 480 Nal~kQra~lenilracvGlpp~n~m~lE~~ 510 (512)
T KOG0693|consen 480 NALSKQRAMLENILRACVGLPPENNMILEFK 510 (512)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccceeeeee
Confidence 9999999999999999999999999999986
No 2
>PLN02438 inositol-3-phosphate synthase
Probab=100.00 E-value=6e-195 Score=1519.66 Aligned_cols=510 Identities=91% Similarity=1.379 Sum_probs=501.4
Q ss_pred CCccceEEeCCCeEecCceEEEEeEeeceEEEEecCCCeeeEEEeeeeeEEEEEecccCCeEEEEEecCCCchhHHHHHH
Q 010460 1 MFIENFKVESPNVKYTDHEIHSVYDYETTELVHENRNGTYQWIVKPKTVKYEFKTDVHVPKLGVMLVGWGGNNGSTLTGG 80 (510)
Q Consensus 1 m~~~~~~v~s~~~~~~~~~i~~~y~y~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~k~GvmlvG~gGn~~TT~~ag 80 (510)
||+.+|+|+||||+|++++|+|+|+|+||+|+++..+|..+|+|+|++++|+|||++|+||+||||||||||||||++||
T Consensus 1 ~~~~~~~v~s~~~~~~~~~i~~~y~y~~t~v~~~~~~~~~~~~~~p~~~~~~f~~~~~~~k~Gv~LVG~gGn~~TT~~aG 80 (510)
T PLN02438 1 MFIESFKVESPNVKYTEDEIHSVYDYETTELVHENRNGKYQWVVKPKTVKYEFKTDRRVPKLGVMLVGWGGNNGSTLTAG 80 (510)
T ss_pred CcccceEecCCCeEEecCEEEEEEEeeeeEEEecccCCcccEEEEEeeEEEEEEeccccCceEEEEecCCchHHHHHHHH
Confidence 89999999999999999999999999999998653344448999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccccccccccCccccceeecccCCCcccccccccCCCCCCCCCeeeeeccCCCCCHHHHHHHCCCCC
Q 010460 81 VISNREGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFD 160 (510)
Q Consensus 81 ~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~rlg~~~~~~~~~p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~ra~Vl~ 160 (510)
++|||+||+|+||+|+|+|||||||||+||||||..+++++|+||+++|||++|||||||||||+++||++||.||+|||
T Consensus 81 ~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~~lG~~~~~~~~~pf~~~lpl~~p~dlVfGGwDI~~~~l~~a~~ra~VLd 160 (510)
T PLN02438 81 VIANKEGISWATKDGVQKANYFGSLTQASTIRVGSFNGEEIYAPFKSLLPMVNPNDIVFGGWDISDMNLADAMERAKVLD 160 (510)
T ss_pred HHHHHcCCCcccccccccCCCcceEEeeeeeecccccCcccccchhhcCCCCCccceEEecccCCCCCHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999779999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhhcCCCCCCCChhhhhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCcccccc
Q 010460 161 IDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVI 240 (510)
Q Consensus 161 ~~l~~~l~~~l~~~~p~p~v~~~~fia~nq~~ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~ 240 (510)
++||+||+|+|++|+|+|+||||+||++||++||+||+.|+|||++||||+|||+||++|+|||||||||||||||+++.
T Consensus 161 ~~l~~~v~~~l~~i~p~p~v~~p~fia~nq~~ra~n~~~g~k~e~ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~ 240 (510)
T PLN02438 161 IDLQKQLRPYMENMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVV 240 (510)
T ss_pred HHHHHHHHHHHHhCCcCccCcCcccchhccchhhcccccccHHHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHH
Q 010460 241 VGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVD 320 (510)
Q Consensus 241 ~~~~dt~e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~ 320 (510)
+++|+|+|+|+++|++|+++||||++||+|||+||||||||+||++|+|+++|||+++|+||+|||||||||+|||+|++
T Consensus 241 ~~~~~t~~~l~~ai~~~~~eispS~~YA~AAl~eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KSGqT~~ksvLa~ 320 (510)
T PLN02438 241 VGLNDTMENLLASIEKDEAEISPSTLYALACILEGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVD 320 (510)
T ss_pred CcccCCHHHHHHHHhcCCCcCChHHHHHHHHHHcCCCeEecCCccccChhhHHHHHHcCCCEecccccCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcCCccCCCCCCCcceeeecccCCCCCceEEEE
Q 010460 321 FLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYVPYVGDSKRAMD 400 (510)
Q Consensus 321 ~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~~~Ly~~g~~~dh~v~I~YvP~lGD~K~A~D 400 (510)
||++|||||++||||||||||||+||++|+||+|||+||++||+||+++|.+||++|++++|+|+|+||||+||+|+|||
T Consensus 321 ~l~~RGlkv~s~~s~N~lGN~Dg~nLs~p~~~~SKeiSKs~vV~dil~~~~~ly~~g~~~~h~v~I~YvP~lGD~K~A~d 400 (510)
T PLN02438 321 FLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVASNSILYEPGEHPDHVVVIKYVPYVGDSKRAMD 400 (510)
T ss_pred HHHHcCCceeeEEEEeccCcchhhhhCCHhHhhhhhhhHHHHHHHHHcccccccccCCCCceEeeccccCcCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCeEEEEEEeeecccccchhHHHhHHHHHHHHHHhhhhhccCCcccccccchhhhhhhccCCCCCCCCCccC
Q 010460 401 EYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVN 480 (510)
Q Consensus 401 e~~~e~flG~~~tI~i~~~ceDSlLAAPLilDLvrlaela~r~~~~~~~~~~~~~~~~V~s~lSy~fKaP~~~~g~~~~n 480 (510)
||++++|||++|+|++||+|+||+||||||||||||+|||+|++++..++++|+++++|+++||||||+|++|+|++++|
T Consensus 401 ~~~~~~FlG~~~~i~~~~~ceDS~lAAPlvlDLvrla~la~R~~~~~~~~~~~~~~~~v~~~lsy~~KaPl~~~G~~~~~ 480 (510)
T PLN02438 401 EYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATLLSYLTKAPLVPPGTPVVN 480 (510)
T ss_pred EEEeeecCCCceEEEEEEEEecchhhHHHHHHHHHHHHHHHhhccccccccccccccchhhHHHHHccCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999988788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCccccccC
Q 010460 481 ALSKQRAMLENILRACVGLAPENNMILEYK 510 (510)
Q Consensus 481 ~l~~Q~~~L~n~lra~~gl~~~~~~~le~~ 510 (510)
+|++||++|+||+|+|+||+|++||+||||
T Consensus 481 ~l~~Q~~~L~n~~r~~~gl~~~~~~~le~~ 510 (510)
T PLN02438 481 ALAKQRAMLENILRACVGLAPENNMLLEYK 510 (510)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCcccccCC
Confidence 999999999999999999999999999997
No 3
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=100.00 E-value=2.6e-90 Score=696.38 Aligned_cols=289 Identities=49% Similarity=0.817 Sum_probs=264.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHHhcCCCccccccccccccccCccccceeecccCCCcccccccccCCCCCCCCCeeeee
Q 010460 62 LGVMLVGWGGNNGSTLTGGVISNREGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDIVFGG 141 (510)
Q Consensus 62 ~GvmlvG~gGn~~TT~~ag~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~rlg~~~~~~~~~p~~~~lPm~~~~dlv~GG 141 (510)
+||||||||||||||+++|++|+|+|++|+| ||+||++++|+| +++|+|||+++||+++||+||||
T Consensus 1 igV~lvG~~GnvaTt~v~Gi~a~k~g~~~~~----------G~vt~~~~~~lG----~~~~~~~~~~~p~~~~d~~vvgg 66 (295)
T PF07994_consen 1 IGVALVGAGGNVATTLVAGIEANKRGLAWPT----------GSVTQLMTFRLG----EEVYVPFKDLLPLAPPDDLVVGG 66 (295)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHHTTSSCCT----------T-CCTCCCCEEC-----EEEEETTCTSTCCGGGEEEEEE
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHcCCCCCC----------Cccccccccccc----ccccccccccCCCCCCCceEEEE
Confidence 6999999999999999999999999999988 999999999999 79999999999999999999999
Q ss_pred ccCCCCCHHHHHHHCCCCCHhHHHHHHHhhhhcCCCCCCCCh-hhhhhhccccCCCCcc---C-CHHHHHHHHHHHHHHH
Q 010460 142 WDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDP-DFIAANQGSRANNVIK---G-TKKEQMLQIIKDIREF 216 (510)
Q Consensus 142 wDI~~~nl~ea~~ra~Vl~~~l~~~l~~~l~~~~p~p~v~~~-~fia~nq~~ra~nv~~---g-~k~e~~e~ir~DIr~F 216 (510)
|||+..|++++|.+|+|++++++++++++|+ |+||+| +||+.+|+.|+||+.. + ++++++|++|+||++|
T Consensus 67 ~DI~~~k~~~~l~~a~v~~~~~~~~v~~~l~-----~~v~~~~~~v~v~~~~~~d~~~~~~~~~~~~~~~e~~~~DI~~f 141 (295)
T PF07994_consen 67 WDIDERKVGEALSEAIVLDPNLLEQVKPDLE-----PSVYPPKDGVAVNQGPRLDGVAPLKEGESKREQVEQIREDIRDF 141 (295)
T ss_dssp EESBTTTCCCCHHHHTTSCHHHHHHCCHHHC-----TB--EC-GGTCCECCCCTTSCCCSGGCSTHHHHHHHHHHHHHHH
T ss_pred eCCCCccHHHHHHHhccCCccccHHHHHHhh-----hhccCccccccccccccCCCccccccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 999998 9999999999999988 3 8999999999999999
Q ss_pred HHhcCCCeEEEEEccCCCccccccccccccHHHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCCCC-ccchHHHH
Q 010460 217 KEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTF-VPGLIDLA 295 (510)
Q Consensus 217 k~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t~-vP~l~elA 295 (510)
|++|++|||||||+||||+|++..+++|+|.++|+++|++|+++++||++||+||+++|||||||+||++. +|++.|||
T Consensus 142 ~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN~tP~~~a~~P~l~ela 221 (295)
T PF07994_consen 142 KKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVNGTPSNIADDPALVELA 221 (295)
T ss_dssp HHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE-SSSTTTTSHHHHHHH
T ss_pred HHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEeccCccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 99999999
Q ss_pred HHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcCCccCC
Q 010460 296 IRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYG 375 (510)
Q Consensus 296 e~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~~~Ly~ 375 (510)
+++|+||+||||||
T Consensus 222 ~~~gvpi~GdD~KT------------------------------------------------------------------ 235 (295)
T PF07994_consen 222 EEKGVPIAGDDGKT------------------------------------------------------------------ 235 (295)
T ss_dssp HHHTEEEEESSBS-------------------------------------------------------------------
T ss_pred HHcCCCeecchHhh------------------------------------------------------------------
Confidence 99999999999999
Q ss_pred CCCCCcceeeecccCCCCCceEEEEEEEeeecCCCeEEEEEEeeecccccchhHHHhHHHHHHHHHHhhhhhccCCcccc
Q 010460 376 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHS 455 (510)
Q Consensus 376 ~g~~~dh~v~I~YvP~lGD~K~A~De~~~e~flG~~~tI~i~~~ceDSlLAAPLilDLvrlaela~r~~~~~~~~~~~~~ 455 (510)
+|||||||||+||++||+|.|
T Consensus 236 ------------------------------------------------~lAAplvlDLirl~~la~r~g----------- 256 (295)
T PF07994_consen 236 ------------------------------------------------PLAAPLVLDLIRLAKLALRRG----------- 256 (295)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred ------------------------------------------------hhhhHHHHHHHHHHHHHHHcC-----------
Confidence 999999999999999999986
Q ss_pred cccchhhhhhhccCCCCCCCCCccChHHHHHHHHHHHHH
Q 010460 456 FHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILR 494 (510)
Q Consensus 456 ~~~V~s~lSy~fKaP~~~~g~~~~n~l~~Q~~~L~n~lr 494 (510)
+++|+++||||||+|++|+|.+++|+|++|+++|+||+|
T Consensus 257 ~~Gv~~~ls~ffK~P~~~~g~~~~~~l~~q~~~L~~~~R 295 (295)
T PF07994_consen 257 MGGVQEWLSFFFKSPMVPPGPPQEHDLFEQYEMLENFLR 295 (295)
T ss_dssp S-EEHHHHHHHBSS-T--TTSTT--HHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHhcCCCccCCCCCCCcHHHHHHHHHHHhC
Confidence 366999999999999999999999999999999999998
No 4
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=100.00 E-value=6.9e-78 Score=611.13 Aligned_cols=353 Identities=27% Similarity=0.338 Sum_probs=309.0
Q ss_pred cCCeEEEEEecCCCchhHHHHHHHHHHhcCCCccccccccccccccCccccceeecccCCCcccccccccCCCCCCCCCe
Q 010460 58 HVPKLGVMLVGWGGNNGSTLTGGVISNREGISWATKDTVQQANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDI 137 (510)
Q Consensus 58 ~~~k~GvmlvG~gGn~~TT~~ag~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~rlg~~~~~~~~~p~~~~lPm~~~~dl 137 (510)
+..+++|+++|.| |++|.++.|+..+|.+ ...+..|+.+++++ |. .|+|+
T Consensus 2 ~~~~vrv~iiG~G-n~AssLvqgie~~k~~-e~~~~~g~~~~~~~---------------------------~~-~~~di 51 (362)
T COG1260 2 TTTMVRVAIIGVG-NCASSLVQGIEYYKAG-EDEPVPGLMHRDEG---------------------------GY-KVEDI 51 (362)
T ss_pred CcceEEEEEEecc-chHHHHHHHHHHHhcc-CCCccceecccccc---------------------------Cc-Cccce
Confidence 3468999999996 9999999999999943 23333333333222 22 47888
Q ss_pred e-eeeccCCCCCHHHHHHHCCCCCHhHHHHHHHhhhhcCCCCCCCChhhhhhhccccCCCCccC---CHHHHHHHHHHHH
Q 010460 138 V-FGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKG---TKKEQMLQIIKDI 213 (510)
Q Consensus 138 v-~GGwDI~~~nl~ea~~ra~Vl~~~l~~~l~~~l~~~~p~p~v~~~~fia~nq~~ra~nv~~g---~k~e~~e~ir~DI 213 (510)
. ++-|||..- -+..||++.++..++ .|++|.|++++.++..|..-.+.| ..+++++++
T Consensus 52 eivaafdvd~~----------KVg~dl~Eai~~~~n----~~~~~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~---- 113 (362)
T COG1260 52 EIVAAFDVDAR----------KVGKDLSEAIKAPPN----VTSKIAPDVPKTGVKVRRGPTLDGEGLHLAEYIERI---- 113 (362)
T ss_pred EEEEeecccHh----------hcChhHHHHHhcCCC----CCceeecccccCCcEecccCCcCcccchhhhhcchh----
Confidence 7 677888543 344799999999988 789999999999999997766666 588888888
Q ss_pred HHHHHhcCCCeEEEEEccCCCccccccccccccHHHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCC-CCccchH
Q 010460 214 REFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQN-TFVPGLI 292 (510)
Q Consensus 214 r~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~-t~vP~l~ 292 (510)
.++++.+-+|.|+|||+++||++.+..| ....++|++||+||+++||||||++|.. ++.|+|+
T Consensus 114 ~~~~e~~~~dvv~vL~~~~tE~lvny~p----------------~gs~~a~~~YA~aal~aG~afvN~~P~~iA~dP~~~ 177 (362)
T COG1260 114 QEESEAEAVDVVVVLNVAKTEVLVNYLP----------------VGSESASYFYAAAALAAGVAFVNAIPVFIASDPAWV 177 (362)
T ss_pred hcccccccccceeeecccCccccccccc----------------cchhHHHHHHHHHHHHcCCceecccCccccCCHHHH
Confidence 6788899999999999999999997665 3456779999999999999999999965 5799999
Q ss_pred HHHHHhCCccccCCCC--CCccchhhhHHHHHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcC
Q 010460 293 DLAIRRNCLIGGDDFK--SGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSN 370 (510)
Q Consensus 293 elAe~~gvpi~GdD~K--SGqT~lksvLa~~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~ 370 (510)
++|+++|+||+|||+| +|||++|++|++||+.||+||.+|||+||+||+||+||++++|++|||+|||++|++|+.+
T Consensus 178 ~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~NigGN~Dflnl~~r~r~~SKk~SKts~V~sil~~- 256 (362)
T COG1260 178 ELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGGNTDFLNLLARERLESKKISKTSAVTSILGY- 256 (362)
T ss_pred HHHHHcCCceeccchhhhcCCceeHHHHHHHHHHcCceeeeEEEEecCCChHHHHhcchhhhhhhhhhHHHHHHHHhcc-
Confidence 9999999999999997 5999999999999999999999999999999999999999999999999999999999963
Q ss_pred CccCCCCCCCcceeeecccCCCCCceEEEEEEEeeecCCCeEEEEEEeeecccccchhHHHhHHHHHHHHHHhhhhhccC
Q 010460 371 GILYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGE 450 (510)
Q Consensus 371 ~~Ly~~g~~~dh~v~I~YvP~lGD~K~A~De~~~e~flG~~~tI~i~~~ceDSlLAAPLilDLvrlaela~r~~~~~~~~ 450 (510)
+-+..++|+.+|+|+|||||+|+|+++|++++|+|.||.|+++|.|+||++||||+|||+||+++|.++|
T Consensus 257 ----~~~~~~~~I~ps~yv~~L~D~K~a~~~ie~~~F~g~~~~l~~~l~v~DSpnsagliiD~vR~~k~a~drG------ 326 (362)
T COG1260 257 ----KLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPNSAGLIIDLVRLAKLALDRG------ 326 (362)
T ss_pred ----cccCCCeEECccccccccCCceEEEEEEEeeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHHHHhcC------
Confidence 4467899999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CcccccccchhhhhhhccCCCCCCCCCccChHHHHHHHHHHHHH
Q 010460 451 GKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILR 494 (510)
Q Consensus 451 ~~~~~~~~V~s~lSy~fKaP~~~~g~~~~n~l~~Q~~~L~n~lr 494 (510)
.+|+|.+.+|||||+|+.+.... -.|+.+|++|++
T Consensus 327 ----i~G~v~~~say~mK~P~~~~~~~-----~~a~~~leefi~ 361 (362)
T COG1260 327 ----IGGPVYEVSAYFMKNPPTQYPDD-----IEARRALEEFII 361 (362)
T ss_pred ----CCceeeehhhhhccCCCcCCCcc-----HHHHHHHHHHhc
Confidence 57899999999999999876332 249999999986
No 5
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=100.00 E-value=2.8e-73 Score=577.72 Aligned_cols=234 Identities=25% Similarity=0.259 Sum_probs=211.6
Q ss_pred CCccccccccccccH-HHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCCC-CccchHHHHHHhCCccccCCCCC-
Q 010460 233 TERYSNVIVGLNDTV-ENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNT-FVPGLIDLAIRRNCLIGGDDFKS- 309 (510)
Q Consensus 233 TEr~~~~~~~~~dt~-e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t-~vP~l~elAe~~gvpi~GdD~KS- 309 (510)
.|+..|+...++++. |+|+++||.|++++ +++||+||+++||+||||+|+.+ ..|+|.++|+++|+||+|||+||
T Consensus 109 ~~~~~dv~~~lk~~~~dVlvnylPvGs~~A--~~~YA~AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD~Ksq 186 (351)
T TIGR03450 109 DAEPVDVVQALKDAKVDVLVSYLPVGSEEA--DKFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIKSQ 186 (351)
T ss_pred ccCHHHHHHHHHhcCCCEEEECCccchHHH--HHHHHHHHHHcCCceEeccCccccCCHHHHHHHHHCCCCEeccccccc
Confidence 666778888888887 99999999999999 99999999999999999999986 48999999999999999999998
Q ss_pred -CccchhhhHHHHHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcCCccCCCCCCCcceeee--
Q 010460 310 -GQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVI-- 386 (510)
Q Consensus 310 -GqT~lksvLa~~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~~~Ly~~g~~~dh~v~I-- 386 (510)
|||++|++|++||++||++|.+|||+|||||+||+||++|+||+|||+||+++|++++...+ ..+|+|+|
T Consensus 187 ~GaTi~h~vLa~lf~~Rgl~v~~~yq~NigGN~Df~nL~~~~r~~SK~iSKs~vV~s~l~~~~-------~~~~~v~IgP 259 (351)
T TIGR03450 187 VGATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDFKNMLERDRLESKKISKTQAVTSNLPDRP-------LKDKNVHIGP 259 (351)
T ss_pred CCCchHHHHHHHHHHHcCCceeeEEEEeecCcchhhhhCChhhhhhhhhhHHHHHHHHhccCC-------CCCCcEEECC
Confidence 99999999999999999999999999999999999999999999999999999999984221 23556666
Q ss_pred -cccCCCCCceEEEEEEEeee--cCCCeEEEEEEeeecccccchhHHHhHHHHHHHHHHhhhhhccCCcccccccchhhh
Q 010460 387 -KYVPYVGDSKRAMDEYTSEI--FMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATIL 463 (510)
Q Consensus 387 -~YvP~lGD~K~A~De~~~e~--flG~~~tI~i~~~ceDSlLAAPLilDLvrlaela~r~~~~~~~~~~~~~~~~V~s~l 463 (510)
+|||||||+| ||+|+.|| |||.||+|+++|+|+||+|||||+|||+||+++|+|+| ..|++.+++
T Consensus 260 sdYvp~lgD~K--~~~i~ieG~~F~G~pm~le~~l~v~DSpnaAglviDlvR~~klA~drG----------~~G~v~~~s 327 (351)
T TIGR03450 260 SDHVGWLDDRK--WAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRG----------IGGPVIPAS 327 (351)
T ss_pred cCCCCcCCCcE--EEEEEEEhhhcCCceEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcC----------CCCcccchh
Confidence 9999999999 66666666 99999999999999999999999999999999999887 346799999
Q ss_pred hhhccCCCCCCCCCccChHHHHHHHHHHHH
Q 010460 464 SYLTKAPLVPPGTPVVNALSKQRAMLENIL 493 (510)
Q Consensus 464 Sy~fKaP~~~~g~~~~n~l~~Q~~~L~n~l 493 (510)
|||||+||.+. ...+.|+++++|+
T Consensus 328 sf~fK~PP~q~------~d~~a~~~~~~fi 351 (351)
T TIGR03450 328 SYLMKSPPEQL------PDDVARAQLEEFI 351 (351)
T ss_pred hhhhcCCcccC------ChHHHHHHHHhhC
Confidence 99999999876 3457899998884
No 6
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain. 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; PDB: 3CIN_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=100.00 E-value=1.3e-45 Score=326.13 Aligned_cols=112 Identities=50% Similarity=0.726 Sum_probs=105.2
Q ss_pred CccchhhhHHHHHHhcCCceeEEEEeeecCCccccCCCCccccchhhhhhhhHHhhhhhcCCccCCCCCCCcceeeeccc
Q 010460 310 GQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYGPGEHPDHVVVIKYV 389 (510)
Q Consensus 310 GqT~lksvLa~~L~~rGlkv~s~~s~N~LGN~Dg~nLs~p~~f~SKeiSKs~vvdd~l~~~~~Ly~~g~~~dh~v~I~Yv 389 (510)
|||+|||+|++||++||++|.+|||+|||||+||+||++|+||+||++||+++|++|++++++|| +++++|+++|+||
T Consensus 1 G~T~~k~~L~~~l~~Rgl~v~~~~q~NilGN~D~~nL~~~~r~~sK~~SKs~~v~~~l~~~~~ly--~~~~~~~~~i~Yv 78 (112)
T PF01658_consen 1 GQTILKSVLAPLLASRGLKVRSWYQYNILGNTDFLNLSDPERFKSKKISKSSVVDSILGSNPELY--DEDPDHIGPIDYV 78 (112)
T ss_dssp SHHHHHHHHHHHHHHTT-EEEEEEEEEEESSHHHHHHTSHHHHHHHHHHHHHHHHHHHSC-TTTS--B---EEEEEEEE-
T ss_pred CCccHHHHHHHHHHHcCCceEEEEEEeeccchHHHHhCCHhHHHhHHHHHHHHHHHHHhcccccc--CCCCccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred CCCCCceEEEEEEEeeecCCCeEEEEEEeeeccc
Q 010460 390 PYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDS 423 (510)
Q Consensus 390 P~lGD~K~A~De~~~e~flG~~~tI~i~~~ceDS 423 (510)
||+||+|+|||+|++++|||+||+|+++|+|+||
T Consensus 79 p~lgD~K~a~~~ie~~~f~G~~~~i~~~~~~~DS 112 (112)
T PF01658_consen 79 PFLGDRKVAWDRIEGEGFLGAPMTIEVNLSVEDS 112 (112)
T ss_dssp GGGTTEEEEEEEEEEEEGGGEEEEEEEEEEEECH
T ss_pred CcCCCceEEEEEEEEeeeCCCcEEEEEEEEEeCC
Confidence 9999999999999999999999999999999998
No 7
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=80.01 E-value=14 Score=37.21 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHH---HHHhhcccC-CCcc---ChhHHHHHHHHhcCCcee
Q 010460 207 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVE---NLLASLDKN-EAEI---SPSTLYAIACVLENIPFI 279 (510)
Q Consensus 207 e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e---~L~~al~~~-~~ei---spS~~YA~AAi~eg~~fI 279 (510)
+++.+-.+..-+ .| -.+|-|...||-|....++.. +..+ .+++.|... ...+ |...--+.||+++|++.|
T Consensus 24 ~~~~~~a~~~~~-~G-AdiIDvG~~st~p~~~~~~~~-~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iI 100 (258)
T cd00423 24 DKALEHARRMVE-EG-ADIIDIGGESTRPGAEPVSVE-EELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADII 100 (258)
T ss_pred HHHHHHHHHHHH-CC-CCEEEECCCcCCCCCCcCCHH-HHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEE
Confidence 344444444433 34 468999999998776544332 2333 234444332 1112 445557889999999999
Q ss_pred eCCCCCCCccchHHHHHHhCCccccCCC-CCCccc---------------hhhhHHHHHHhcCCceeEE
Q 010460 280 NGSPQNTFVPGLIDLAIRRNCLIGGDDF-KSGQTK---------------MKSVLVDFLVGAGIKPTSI 332 (510)
Q Consensus 280 NgsPq~t~vP~l~elAe~~gvpi~GdD~-KSGqT~---------------lksvLa~~L~~rGlkv~s~ 332 (510)
|..-....-+.+.+++.+.|+++..--. ..|++. .=.-+++.+.++|+....+
T Consensus 101 Ndis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~I 169 (258)
T cd00423 101 NDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDI 169 (258)
T ss_pred EeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 9986433238999999999998665322 134421 1123445566788776544
No 8
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=73.86 E-value=5.5 Score=42.03 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=88.7
Q ss_pred eeecccCCCcccccccccCCCCCCCCCeeeeeccCCCCCHHHHHHH--CCCCCH--hHH-HHHHHhhhhcCCCCCCCChh
Q 010460 110 AIRVGSYNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMAR--ARVFDI--DLQ-KQLRPYMESMVPLPGIYDPD 184 (510)
Q Consensus 110 t~rlg~~~~~~~~~p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~r--a~Vl~~--~l~-~~l~~~l~~~~p~p~v~~~~ 184 (510)
++++| |+.+++-|+--.++.||.=|.+.=||+-+....+++.. ..|++- ++. +|.+. |-.|
T Consensus 26 ~v~iG---Ge~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~-----------~GAd 91 (319)
T PRK04452 26 TVKLG---GETALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEE-----------YGAD 91 (319)
T ss_pred eEEEC---CcccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHH-----------hCCC
Confidence 44555 77777666678999999999999999988776665542 333211 011 11111 2234
Q ss_pred hhhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcc-CCCccccccccccccHHHHHhhcccCCCccCh
Q 010460 185 FIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTA-NTERYSNVIVGLNDTVENLLASLDKNEAEISP 263 (510)
Q Consensus 185 fia~nq~~ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtA-sTEr~~~~~~~~~dt~e~L~~al~~~~~eisp 263 (510)
||+-|-..- + ..+ +-.-.+...+=++...+. .|--++||++ |-|+ .+++|.++++.
T Consensus 92 ~Idl~~~s~-d--p~~-~d~~~~e~~~~Vk~V~ea--vd~PL~Id~s~n~~k----------D~evleaale~------- 148 (319)
T PRK04452 92 MITLHLIST-D--PNG-KDKSPEEAAKTVEEVLQA--VDVPLIIGGSGNPEK----------DAEVLEKVAEA------- 148 (319)
T ss_pred EEEEECCCC-C--ccc-ccchHHHHHHHHHHHHHh--CCCCEEEecCCCCCC----------CHHHHHHHHHH-------
Confidence 444331100 0 001 011111111122222222 4556666655 3333 23444444432
Q ss_pred hHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEE
Q 010460 264 STLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 264 S~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
+..+-+.||++-.. ..-.+.++|.+.|.++++--... --+=.-|...|...|+.+..++
T Consensus 149 --------~~g~~pLInSat~e-n~~~i~~lA~~y~~~Vva~s~~D--ln~ak~L~~~l~~~Gi~~edIv 207 (319)
T PRK04452 149 --------AEGERCLLGSAEED-NYKKIAAAAMAYGHAVIAWSPLD--INLAKQLNILLTELGVPRERIV 207 (319)
T ss_pred --------hCCCCCEEEECCHH-HHHHHHHHHHHhCCeEEEEcHHH--HHHHHHHHHHHHHcCCCHHHEE
Confidence 11122456655421 25677777788887765532111 3355567777888888776665
No 9
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=73.67 E-value=26 Score=35.58 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHHH---HhhcccC-CCcc---ChhHHHHHHHHhcCCce
Q 010460 206 MLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENL---LASLDKN-EAEI---SPSTLYAIACVLENIPF 278 (510)
Q Consensus 206 ~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L---~~al~~~-~~ei---spS~~YA~AAi~eg~~f 278 (510)
.+++++-.+... +.|. .+|=|...||.+..+.+... +..+.| ++++... .-.+ +++.--+.+|+++|+++
T Consensus 22 ~~~~~~~a~~~~-~~GA-~iIDIG~~st~p~~~~i~~~-~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~i 98 (257)
T TIGR01496 22 VDKAVAHAERML-EEGA-DIIDVGGESTRPGADRVSPE-EELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAGADI 98 (257)
T ss_pred HHHHHHHHHHHH-HCCC-CEEEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCE
Confidence 344444444554 3454 46777777887765433211 122223 3444332 2222 45666788899999999
Q ss_pred eeCCCCCCCccchHHHHHHhCCccccCC
Q 010460 279 INGSPQNTFVPGLIDLAIRRNCLIGGDD 306 (510)
Q Consensus 279 INgsPq~t~vP~l~elAe~~gvpi~GdD 306 (510)
||-.---. .+.+.+++++.|+++..=.
T Consensus 99 INsis~~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 99 INDVSGGQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEECCCCC-CchhHHHHHHcCCcEEEEe
Confidence 99875322 7889999999999877743
No 10
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=69.74 E-value=16 Score=39.54 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred HhcCCCeEEEEEccCC-------CccccccccccccHHHHHhhcccCCC-ccChhHHHHHHHHhc--CCceeeC-CCCCC
Q 010460 218 EKNKVDRVVVLWTANT-------ERYSNVIVGLNDTVENLLASLDKNEA-EISPSTLYAIACVLE--NIPFING-SPQNT 286 (510)
Q Consensus 218 ~~~~ld~vVVlwtAsT-------Er~~~~~~~~~dt~e~L~~al~~~~~-eispS~~YA~AAi~e--g~~fINg-sPq~t 286 (510)
++.|++-+++-..++| .+|..+..+ ..|.+.+.++-.+... -++|+..++-..+++ |+||+.. .|--.
T Consensus 191 ~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~g-g~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~ 269 (432)
T TIGR01285 191 EAFGLKPIILPDLSRSLDGHLADDDFSPITQG-GTTLEQIRQIGQSCCTLAIGESMRRAASLLADRCGVPYIVFPSLMGL 269 (432)
T ss_pred HHcCCceEEecccccccCCCCCCCccceeCCC-CCcHHHHHhhccCcEEEEEChhHHHHHHHHHHHHCCCeEecCCCcCh
Confidence 3778876555433322 233322222 4577888876544321 168888887777764 9999987 45210
Q ss_pred --CccchHHHHHHhCCcc----------------------ccCCCCC-CccchhhhHHHHHHhcCCceeEEEEeee
Q 010460 287 --FVPGLIDLAIRRNCLI----------------------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSYNH 337 (510)
Q Consensus 287 --~vP~l~elAe~~gvpi----------------------~GdD~KS-GqT~lksvLa~~L~~rGlkv~s~~s~N~ 337 (510)
..--+.++++-.|.++ .|.=+-= |..-.--.|+.||.+-|++|..++..+.
T Consensus 270 ~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~ 345 (432)
T TIGR01285 270 EAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTG 345 (432)
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 0223444444444322 1211100 3333447899999999999999988763
No 11
>PRK06349 homoserine dehydrogenase; Provisional
Probab=67.50 E-value=43 Score=36.30 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEEEccCCCcccccc---ccccccHHHHHhhcccC-----CCccChhHHHHHHHHh
Q 010460 203 KEQMLQIIKDIREFKEKNKVD-RVVVLWTANTERYSNVI---VGLNDTVENLLASLDKN-----EAEISPSTLYAIACVL 273 (510)
Q Consensus 203 ~e~~e~ir~DIr~Fk~~~~ld-~vVVlwtAsTEr~~~~~---~~~~dt~e~L~~al~~~-----~~eispS~~YA~AAi~ 273 (510)
..++++|.+....|+++.|.+ +++-++..+-++..... ..+.++.+.+++.-+-+ -....|..-|+.+|++
T Consensus 16 ~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~ 95 (426)
T PRK06349 16 SGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIEPARELILKALE 95 (426)
T ss_pred HHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHH
Confidence 457788888878888888876 66667766655533211 12334555555421110 0112456789999999
Q ss_pred cCCceeeCCCCCC--CccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEE
Q 010460 274 ENIPFINGSPQNT--FVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 334 (510)
Q Consensus 274 eg~~fINgsPq~t--~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s 334 (510)
+|.+.|-.-|... ..+.+.++|+++|+.+.=.=.-.|.+..-+.|-+.+ +|=++.++..
T Consensus 96 ~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l--~~~~I~~I~G 156 (426)
T PRK06349 96 AGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL--AANRITRVMG 156 (426)
T ss_pred CCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc--ccCCeeEEEE
Confidence 9999996666432 358899999999997661111137888888888886 4555666554
No 12
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.81 E-value=48 Score=33.67 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHHH---HhhcccC-CCcc---ChhHHHHHHHHhcCCcee
Q 010460 207 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENL---LASLDKN-EAEI---SPSTLYAIACVLENIPFI 279 (510)
Q Consensus 207 e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L---~~al~~~-~~ei---spS~~YA~AAi~eg~~fI 279 (510)
+++.+-.+.+.+ .| -.+|=|...||.+..+.+.+. +..+.+ ++.|... ...+ ++..--+.+|+++|++.|
T Consensus 24 ~~~~~~a~~~~~-~G-AdiIDIG~~st~p~~~~i~~~-~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iI 100 (257)
T cd00739 24 DKAVAHAEKMIA-EG-ADIIDIGGESTRPGADPVSVE-EELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGADII 100 (257)
T ss_pred HHHHHHHHHHHH-CC-CCEEEECCCcCCCCCCCCCHH-HHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEE
Confidence 444444444443 44 457888888998876544322 233443 4445432 1122 345556788999999999
Q ss_pred eCCCCCCCccchHHHHHHhCCccccCC
Q 010460 280 NGSPQNTFVPGLIDLAIRRNCLIGGDD 306 (510)
Q Consensus 280 NgsPq~t~vP~l~elAe~~gvpi~GdD 306 (510)
|-.--...-+.+.+++.+.|+++..-.
T Consensus 101 Ndisg~~~~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 101 NDVSGGSDDPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EeCCCCCCChHHHHHHHHcCCCEEEEC
Confidence 987643323889999999999977744
No 13
>PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed
Probab=64.27 E-value=5.1 Score=34.67 Aligned_cols=15 Identities=47% Similarity=0.824 Sum_probs=13.5
Q ss_pred eeccCCCCCHHHHHH
Q 010460 140 GGWDISDMNLADAMA 154 (510)
Q Consensus 140 GGwDI~~~nl~ea~~ 154 (510)
-||||+..+-|+||.
T Consensus 14 vGWdistvd~YDAmm 28 (84)
T PRK12301 14 VGWDISTVDSYDALM 28 (84)
T ss_pred ccccccCcccHhhHH
Confidence 579999999999985
No 14
>PRK06270 homoserine dehydrogenase; Provisional
Probab=57.97 E-value=20 Score=37.58 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=50.4
Q ss_pred hHHHHHHHHhcCCceeeC--CCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEE
Q 010460 264 STLYAIACVLENIPFING--SPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 334 (510)
Q Consensus 264 S~~YA~AAi~eg~~fINg--sPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s 334 (510)
+.-|+.+|++.|++.|-. .|-....+.+.++|+++|+.+.=.=.-.|..++=..|-+.+. |=++.++..
T Consensus 107 a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l~--g~~I~~I~G 177 (341)
T PRK06270 107 ALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAMPIINLAKETLA--GNDIKSIKG 177 (341)
T ss_pred HHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhcc--cCceEEEEE
Confidence 467999999999999876 564444689999999999977622222378888888888754 556666544
No 15
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=57.86 E-value=38 Score=33.11 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHHHHhhcccC-----CCcc---ChhHHHHHHH
Q 010460 200 GTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-----EAEI---SPSTLYAIAC 271 (510)
Q Consensus 200 g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L~~al~~~-----~~ei---spS~~YA~AA 271 (510)
|.+....+...++++++.++ | -.+|=|...||=|....++.. +..+.|...|+.- ...+ ++..--+.+|
T Consensus 12 g~~~~~~~~a~~~a~~~~~~-G-AdiIDIg~~st~p~~~~v~~~-eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~a 88 (210)
T PF00809_consen 12 GGRKFSEDEAVKRAREQVEA-G-ADIIDIGAESTRPGATPVSEE-EEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAA 88 (210)
T ss_dssp TTCHHHHHHHHHHHHHHHHT-T--SEEEEESSTSSTTSSSSHHH-HHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHH
T ss_pred cCcccCHHHHHHHHHHHHHh-c-CCEEEecccccCCCCCcCCHH-HHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHH
Confidence 44555556566668888764 4 358999999998877544322 2333333333321 1222 3444567889
Q ss_pred HhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCC---C-------ccchhhhHHHHHHh-------cCCceeEEE
Q 010460 272 VLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKS---G-------QTKMKSVLVDFLVG-------AGIKPTSIV 333 (510)
Q Consensus 272 i~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KS---G-------qT~lksvLa~~L~~-------rGlkv~s~~ 333 (510)
+++|+..||-+=.....|.+.+++.+.++++..=-... | ..-+=..+.++|.+ .||....|+
T Consensus 89 L~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii 167 (210)
T PF00809_consen 89 LKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERII 167 (210)
T ss_dssp HHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEE
T ss_pred HHcCcceEEecccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEe
Confidence 99999999998865458999999999999876533331 1 11233456667776 699776665
No 16
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=53.14 E-value=37 Score=35.25 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=65.4
Q ss_pred cCCCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHH---HHhhcccC-CCccC---hhH
Q 010460 193 RANNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVEN---LLASLDKN-EAEIS---PST 265 (510)
Q Consensus 193 ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~---L~~al~~~-~~eis---pS~ 265 (510)
..|....|.+....+++.+-++++-+ .| -.+|=|-.-||-+.++.++.- +..+. ++++|... .-.|| -..
T Consensus 24 TpDSFsdgg~~~~~~~a~~~a~~~~~-~G-AdIIDIGgeSTrPg~~~v~~e-eE~~Rv~pvI~~l~~~~~~~ISIDT~~~ 100 (282)
T PRK11613 24 TPDSFSDGGTHNSLIDAVKHANLMIN-AG-ATIIDVGGESTRPGAAEVSVE-EELDRVIPVVEAIAQRFEVWISVDTSKP 100 (282)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-CC-CcEEEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHhcCCCeEEEECCCH
Confidence 33444446555556666666777764 44 357888888998877644321 22222 23444421 11121 233
Q ss_pred HHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCcccc
Q 010460 266 LYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGG 304 (510)
Q Consensus 266 ~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~G 304 (510)
--|.+|+++|+..||-.-.. ..|.+.+.+.+.|+++.-
T Consensus 101 ~va~~AL~~GadiINDI~g~-~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 101 EVIRESAKAGAHIINDIRSL-SEPGALEAAAETGLPVCL 138 (282)
T ss_pred HHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHcCCCEEE
Confidence 45788999999999988542 268888888888877653
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=51.87 E-value=1.4e+02 Score=31.36 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEEEccCCCccc----cccc------------cc-------cccHHHHHhhcccC-
Q 010460 203 KEQMLQIIKDIREFKEKNKVD-RVVVLWTANTERYS----NVIV------------GL-------NDTVENLLASLDKN- 257 (510)
Q Consensus 203 ~e~~e~ir~DIr~Fk~~~~ld-~vVVlwtAsTEr~~----~~~~------------~~-------~dt~e~L~~al~~~- 257 (510)
...+++|.+.-..|++++|.+ +|+-+=.++.-.|. ++.. .+ ..+.+.+++..+.+
T Consensus 15 ~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~DV 94 (336)
T PRK08374 15 RAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFSPEEIVEEIDADI 94 (336)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCCHHHHHhcCCCCE
Confidence 356677777777888899977 54444222322221 1100 00 01344444322211
Q ss_pred ---CCccChhHHHHHHHHhcCCceeeCC--CCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEE
Q 010460 258 ---EAEISPSTLYAIACVLENIPFINGS--PQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSI 332 (510)
Q Consensus 258 ---~~eispS~~YA~AAi~eg~~fINgs--Pq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~ 332 (510)
-....+..-+...|+.+|++.|=++ |-....+.+.++|+++|+++.=.=--+|..++=+.|-+.| +|=++.++
T Consensus 95 vVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l--~g~~i~~i 172 (336)
T PRK08374 95 VVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLLRENL--LGDTVKRI 172 (336)
T ss_pred EEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc--cccceEEE
Confidence 0001234455668889999999554 3222468899999999999874443458889889998888 78888888
Q ss_pred EE
Q 010460 333 VS 334 (510)
Q Consensus 333 ~s 334 (510)
..
T Consensus 173 ~G 174 (336)
T PRK08374 173 EA 174 (336)
T ss_pred EE
Confidence 76
No 18
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=51.49 E-value=84 Score=32.95 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhcCCceeeC-----------------CCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhc
Q 010460 263 PSTLYAIACVLENIPFING-----------------SPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGA 325 (510)
Q Consensus 263 pS~~YA~AAi~eg~~fINg-----------------sPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~r 325 (510)
.+.--|..++++|+.||-- .|+.+.++.+.+.+.+.++|+..| |.-.--..++..|. .
T Consensus 144 ~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~----GGI~~~~di~kAla-~ 218 (325)
T cd00381 144 VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIAD----GGIRTSGDIVKALA-A 218 (325)
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec----CCCCCHHHHHHHHH-c
Confidence 3556678888999999851 233233455566666678998865 33333344455554 4
Q ss_pred CC
Q 010460 326 GI 327 (510)
Q Consensus 326 Gl 327 (510)
|-
T Consensus 219 GA 220 (325)
T cd00381 219 GA 220 (325)
T ss_pred CC
Confidence 43
No 19
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.14 E-value=10 Score=37.31 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=24.2
Q ss_pred HHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccc
Q 010460 268 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIG 303 (510)
Q Consensus 268 A~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~ 303 (510)
|.+|+++|+.|| -|| .+.|.+++.|.++|+|+.
T Consensus 73 a~~a~~aGA~Fi-vSP--~~~~~v~~~~~~~~i~~i 105 (196)
T PF01081_consen 73 AEAAIAAGAQFI-VSP--GFDPEVIEYAREYGIPYI 105 (196)
T ss_dssp HHHHHHHT-SEE-EES--S--HHHHHHHHHHTSEEE
T ss_pred HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCccc
Confidence 566788899998 677 378899999999998854
No 20
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.12 E-value=15 Score=36.85 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=40.3
Q ss_pred cChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEee
Q 010460 261 ISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYN 336 (510)
Q Consensus 261 ispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N 336 (510)
+++.++ .+|+++|+.|| -|| .+.|.+++.|.++|+|+.= |..--.- +-.-.+.|.+...+|=-+
T Consensus 79 l~~e~a--~~a~~aGA~Fi-VsP--~~~~~v~~~~~~~~i~~iP-----G~~TpsE--i~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 79 VDAATA--ALYIQLGANFI-VTP--LFNPDIAKVCNRRKVPYSP-----GCGSLSE--IGYAEELGCEIVKLFPGS 142 (222)
T ss_pred cCHHHH--HHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEeC-----CCCCHHH--HHHHHHCCCCEEEECccc
Confidence 344443 56889999999 788 4789999999999998642 2211111 112335666666666433
No 21
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.99 E-value=15 Score=36.28 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=40.0
Q ss_pred HHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEeeecC
Q 010460 268 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLG 339 (510)
Q Consensus 268 A~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N~LG 339 (510)
|..|+++|+.|| -|| .+.|.+++.|+++|+|+.= |..-..-+ -.-.+.|.+...+|=-+.+|
T Consensus 69 a~~ai~aGA~Fi-vSP--~~~~~vi~~a~~~~i~~iP-----G~~TptEi--~~A~~~Ga~~vK~FPa~~~G 130 (201)
T PRK06015 69 FEDAAKAGSRFI-VSP--GTTQELLAAANDSDVPLLP-----GAATPSEV--MALREEGYTVLKFFPAEQAG 130 (201)
T ss_pred HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEeC-----CCCCHHHH--HHHHHCCCCEEEECCchhhC
Confidence 467889999999 788 4789999999999998642 22211111 12335666666666544443
No 22
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.44 E-value=16 Score=36.16 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=44.3
Q ss_pred cChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEeeecC
Q 010460 261 ISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLG 339 (510)
Q Consensus 261 ispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N~LG 339 (510)
+++.+ |.+|+++|+.|| -|| .+.|.+++.|.++|+|+.= .-.|. . - +-.-.+.|.+...+|=-+.+|
T Consensus 68 l~~~~--a~~a~~aGA~Fi-vsP--~~~~~v~~~~~~~~i~~iP----G~~Tp-t-E-i~~A~~~Ga~~vKlFPA~~~G 134 (204)
T TIGR01182 68 LNPEQ--LRQAVDAGAQFI-VSP--GLTPELAKHAQDHGIPIIP----GVATP-S-E-IMLALELGITALKLFPAEVSG 134 (204)
T ss_pred CCHHH--HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCcEEC----CCCCH-H-H-HHHHHHCCCCEEEECCchhcC
Confidence 34444 667889999999 888 4789999999999998654 11222 1 1 122345677777777655444
No 23
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.09 E-value=17 Score=36.06 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEE
Q 010460 268 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 268 A~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
+..|+.+|+.||= || .+.|.+++.|.++|+|+.= |..-. +-+... .+.|......|
T Consensus 81 ~~~a~~aGA~Fiv-sP--~~~~~v~~~~~~~~i~~iP-----G~~T~-~E~~~A-~~~Gad~vklF 136 (213)
T PRK06552 81 ARLAILAGAQFIV-SP--SFNRETAKICNLYQIPYLP-----GCMTV-TEIVTA-LEAGSEIVKLF 136 (213)
T ss_pred HHHHHHcCCCEEE-CC--CCCHHHHHHHHHcCCCEEC-----CcCCH-HHHHHH-HHcCCCEEEEC
Confidence 4678899999994 88 5789999999999999653 32222 222222 35788777764
No 24
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=49.08 E-value=7.7 Score=42.91 Aligned_cols=81 Identities=28% Similarity=0.415 Sum_probs=53.6
Q ss_pred hcccCCCccChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHH-HhCCccccCCCCCCccchhhhHHHHHHhcCCceeE
Q 010460 253 SLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAI-RRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTS 331 (510)
Q Consensus 253 al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe-~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s 331 (510)
|++++.+|+ .+|.+.|+|++...= -|.|+-+ +.++-|+|..+||-. .|.|+-.|...|+.|.-
T Consensus 75 Ai~~~NpEi-------~~A~e~~ipi~~r~e------~Laelm~~~~~iaVaGTHGKTTT---Tsmla~vl~~~gldPtf 138 (459)
T COG0773 75 AIKEDNPEI-------VAALERGIPVISRAE------MLAELMRFRTSIAVAGTHGKTTT---TSMLAWVLEAAGLDPTF 138 (459)
T ss_pred ccCCCCHHH-------HHHHHcCCCeEcHHH------HHHHHHhCCeeEEEeCCCCchhH---HHHHHHHHHhCCCCCEE
Confidence 455667776 467788988884432 3344443 677889998777654 46788899999999987
Q ss_pred EEE-------ee-ecCCccccCCCCc
Q 010460 332 IVS-------YN-HLGNNDGMNLSAP 349 (510)
Q Consensus 332 ~~s-------~N-~LGN~Dg~nLs~p 349 (510)
+.. .| .+|.+|..+-.+.
T Consensus 139 ~iGG~~~~~g~na~~g~~~~fV~EAD 164 (459)
T COG0773 139 LIGGILKNFGTNARLGSGDYFVAEAD 164 (459)
T ss_pred EECcccccCCcccccCCCceEEEEec
Confidence 776 22 4555555444433
No 25
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.94 E-value=2.9e+02 Score=29.94 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=101.0
Q ss_pred CCCCeeeeeccCCCCCHHHHHHH-------------CCCCCHhHHHHHHHhhhh-----cCCCCCCCChhhhh-------
Q 010460 133 NPDDIVFGGWDISDMNLADAMAR-------------ARVFDIDLQKQLRPYMES-----MVPLPGIYDPDFIA------- 187 (510)
Q Consensus 133 ~~~dlv~GGwDI~~~nl~ea~~r-------------a~Vl~~~l~~~l~~~l~~-----~~p~p~v~~~~fia------- 187 (510)
+-+|+||||.|--...+.++..+ +.++--|+..-++...++ =.|.-.|--|+|..
T Consensus 57 ~E~d~VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~ 136 (417)
T cd01966 57 DEVSTILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWA 136 (417)
T ss_pred CCCcEEECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHH
Confidence 46789999886544444555544 233444555555544333 13444455577651
Q ss_pred -----------hhc-----cccCCCCccCC-H-HHHHHHHHHHHHHHHHhcCCCeEEEEEcc------CCCccccccccc
Q 010460 188 -----------ANQ-----GSRANNVIKGT-K-KEQMLQIIKDIREFKEKNKVDRVVVLWTA------NTERYSNVIVGL 243 (510)
Q Consensus 188 -----------~nq-----~~ra~nv~~g~-k-~e~~e~ir~DIr~Fk~~~~ld~vVVlwtA------sTEr~~~~~~~~ 243 (510)
..+ ..+.=|++.|. . ...++ .|++.-++.|++-+++--.+ -..+|.....+
T Consensus 137 ~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~----eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~g- 211 (417)
T cd01966 137 AAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVE----ELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTG- 211 (417)
T ss_pred HHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHH----HHHHHHHHcCCceEEecCcccccCCCCCCCccccCCC-
Confidence 111 12224555552 1 22232 34555567788765552222 22334322221
Q ss_pred cccHHHHHhhcccCCC-ccChhHHHHHHHHhc--CCceeeC-CCCCC--CccchHHHHHHhCCcc---------------
Q 010460 244 NDTVENLLASLDKNEA-EISPSTLYAIACVLE--NIPFING-SPQNT--FVPGLIDLAIRRNCLI--------------- 302 (510)
Q Consensus 244 ~dt~e~L~~al~~~~~-eispS~~YA~AAi~e--g~~fINg-sPq~t--~vP~l~elAe~~gvpi--------------- 302 (510)
..|.+.+.++-.+.-. -++++..++-..+++ |.||+.. +|--. ..--+.++++..|.++
T Consensus 212 gt~leei~~~~~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~~ 291 (417)
T cd01966 212 GTTLEDIRQMGRSAATLAIGESMRKAAEALEERTGVPYYVFPSLTGLEAVDALIATLAKLSGRPVPEKIRRQRAQLQDAM 291 (417)
T ss_pred CCcHHHHHhhccCeEEEEECHHHHHHHHHHHHHHCCCeeecCCCcchHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 3466777776433211 156777766666654 9999987 45210 0122333333333222
Q ss_pred -------ccCCCCC-CccchhhhHHHHHHhcCCceeEEEEee
Q 010460 303 -------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSYN 336 (510)
Q Consensus 303 -------~GdD~KS-GqT~lksvLa~~L~~rGlkv~s~~s~N 336 (510)
.|.-+-= |..-.--.|+.||.+-|+.|...+..+
T Consensus 292 ~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG~~~~~~~~~~ 333 (417)
T cd01966 292 LDGHFYLGGKRVAIALEPDLLAALSSFLAEMGAEIVAAVATT 333 (417)
T ss_pred HHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 1221100 333344669999999999999887764
No 26
>COG1647 Esterase/lipase [General function prediction only]
Probab=47.32 E-value=36 Score=34.83 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=49.3
Q ss_pred ccccCCCCCCCCCeeeeeccCCCCCHHHHHHHCCCCCHhHHHHHHHhhhhcCC--C-----------------CCCCChh
Q 010460 124 PFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVP--L-----------------PGIYDPD 184 (510)
Q Consensus 124 p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~ra~Vl~~~l~~~l~~~l~~~~p--~-----------------p~v~~~~ 184 (510)
|.|.++||..|-.. --|+|-=.++-+-.++++=++-..++++..+|+++++ + --||.|-
T Consensus 107 p~K~iv~m~a~~~~--k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt 184 (243)
T COG1647 107 PPKKIVPMCAPVNV--KSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPT 184 (243)
T ss_pred CccceeeecCCccc--ccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccch
Confidence 34556666555332 3488877777666677777777888888888888884 2 3478888
Q ss_pred hhhhhccccCCCCcc
Q 010460 185 FIAANQGSRANNVIK 199 (510)
Q Consensus 185 fia~nq~~ra~nv~~ 199 (510)
||. ..|.|+.++
T Consensus 185 ~vv---q~~~D~mv~ 196 (243)
T COG1647 185 LVV---QGRQDEMVP 196 (243)
T ss_pred hhe---ecccCCCCC
Confidence 888 446677665
No 27
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=43.98 E-value=23 Score=38.52 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=51.8
Q ss_pred CceeeCCCCC-C-Cc------cchHHHHHHhCCccccCCCCC-----Cccchh-hhHHHHHHhcCCceeE-EEEeeecCC
Q 010460 276 IPFINGSPQN-T-FV------PGLIDLAIRRNCLIGGDDFKS-----GQTKMK-SVLVDFLVGAGIKPTS-IVSYNHLGN 340 (510)
Q Consensus 276 ~~fINgsPq~-t-~v------P~l~elAe~~gvpi~GdD~KS-----GqT~lk-svLa~~L~~rGlkv~s-~~s~N~LGN 340 (510)
-.||=|.|+| | .| -.+.|||+++|+.+.-|++-. |++-+- ..|.+.++++-+...| .=.+|+.|=
T Consensus 160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL 239 (388)
T COG1168 160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL 239 (388)
T ss_pred cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh
Confidence 4799999998 3 23 678999999999999999766 754444 4488888999888888 566777764
Q ss_pred cc
Q 010460 341 ND 342 (510)
Q Consensus 341 ~D 342 (510)
.=
T Consensus 240 ~~ 241 (388)
T COG1168 240 KC 241 (388)
T ss_pred hh
Confidence 43
No 28
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=38.43 E-value=1e+02 Score=34.73 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHHHHhhcccC-CCcc---ChhHHHHHHHHhcCCceeeCC
Q 010460 207 LQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLASLDKN-EAEI---SPSTLYAIACVLENIPFINGS 282 (510)
Q Consensus 207 e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L~~al~~~-~~ei---spS~~YA~AAi~eg~~fINgs 282 (510)
+.|.+-.+.+.+ .| -.+|-|.+.||++..+ ....+++++... ...+ |++.--+.||+++|+++||-.
T Consensus 165 ~~i~~~A~~~~~-~G-ADIIDIG~~st~p~~~-------~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMER-DG-ADMVALGTGSFDDDPD-------VVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHH-CC-CCEEEECCCcCCCcHH-------HHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEEC
Confidence 667777777764 45 4589999999977443 122333344332 1222 466777899999999999954
Q ss_pred CCCCCccchHHHHHHhCCccccCCCCCCcc--chhhhHHHHHHhcCC
Q 010460 283 PQNTFVPGLIDLAIRRNCLIGGDDFKSGQT--KMKSVLVDFLVGAGI 327 (510)
Q Consensus 283 Pq~t~vP~l~elAe~~gvpi~GdD~KSGqT--~lksvLa~~L~~rGl 327 (510)
-. ...+.+.+++.+.|+++..=-.. -.. ..=.-+++.+..+|+
T Consensus 236 s~-~~~d~~~~l~a~~g~~vVlm~~~-~~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 236 DV-ENAVELASEKKLPEDAFVVVPGN-QPTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred Cc-cchhHHHHHHHHcCCeEEEEcCC-CCchHHHHHHHHHHHHHCCC
Confidence 32 23678888899988886653211 011 111244567788888
No 29
>PRK13753 dihydropteroate synthase; Provisional
Probab=37.38 E-value=82 Score=32.85 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHH---HHHhhcccCCCccChhH---HHH
Q 010460 195 NNVIKGTKKEQMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVE---NLLASLDKNEAEISPST---LYA 268 (510)
Q Consensus 195 ~nv~~g~k~e~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e---~L~~al~~~~~eispS~---~YA 268 (510)
|....|.+.-..+++.+-++.+-+ .|. .+|-|=.-||.|..+.++.- +..+ -++++|......||=-| --|
T Consensus 13 DSFsDGg~~~~~d~a~~~a~~m~~-~GA-dIIDIGgeSTrPga~~vs~e-eE~~Rv~pvI~~l~~~~~~ISIDT~~~~va 89 (279)
T PRK13753 13 DSFFDESRRLDPAGAVTAAIEMLR-VGS-DVVDVGPAASHPDARPVSPA-DEIRRIAPLLDALSDQMHRVSIDSFQPETQ 89 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCC-cEEEECCCCCCCCCCcCCHH-HHHHHHHHHHHHHHhCCCcEEEECCCHHHH
Confidence 333335443344555556666654 454 46666666998887654322 2333 34444443222343233 336
Q ss_pred HHHHhcCCceeeCCCCCCCccchHHHHHHhCCcc
Q 010460 269 IACVLENIPFINGSPQNTFVPGLIDLAIRRNCLI 302 (510)
Q Consensus 269 ~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi 302 (510)
.+|+++|+.+||-.-... .|.+.+.+.+.++++
T Consensus 90 ~~al~aGadiINDVsg~~-d~~~~~vva~~~~~v 122 (279)
T PRK13753 90 RYALKRGVGYLNDIQGFP-DPALYPDIAEADCRL 122 (279)
T ss_pred HHHHHcCCCEEEeCCCCC-chHHHHHHHHcCCCE
Confidence 788899999999875432 788888888877664
No 30
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=37.36 E-value=75 Score=33.47 Aligned_cols=140 Identities=20% Similarity=0.166 Sum_probs=85.4
Q ss_pred CCCHHH---HHHHCCCCCHhHHHHHHHhhhhcCCCCCCCChhhhhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcCC
Q 010460 146 DMNLAD---AMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNKV 222 (510)
Q Consensus 146 ~~nl~e---a~~ra~Vl~~~l~~~l~~~l~~~~p~p~v~~~~fia~nq~~ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~l 222 (510)
..|.++ .|.+||+---.+=+|+-|.+-.-.|-+.|+ +..+++++|++= ++=+.
T Consensus 92 ~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~-------------------~~~e~v~rIkAa-~~a~~---- 147 (289)
T COG2513 92 ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELV-------------------SIDEMVDRIKAA-VEARR---- 147 (289)
T ss_pred HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcC-------------------CHHHHHHHHHHH-HHhcc----
Confidence 456544 456788876666666666543222222222 567899998863 22111
Q ss_pred CeEEEEEccCCCccccccccccccHHHHHhhcccCCCccChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCcc
Q 010460 223 DRVVVLWTANTERYSNVIVGLNDTVENLLASLDKNEAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLI 302 (510)
Q Consensus 223 d~vVVlwtAsTEr~~~~~~~~~dt~e~L~~al~~~~~eispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi 302 (510)
|.. .+-+|.||-+. ..+ |..+|++ |.|.+++|+--| +.|..+-...+.++++.-.+|+
T Consensus 148 ~~~-fvi~ARTda~~--~~~-------ld~AI~R-----------a~AY~eAGAD~i-f~~al~~~e~i~~f~~av~~pl 205 (289)
T COG2513 148 DPD-FVIIARTDALL--VEG-------LDDAIER-----------AQAYVEAGADAI-FPEALTDLEEIRAFAEAVPVPL 205 (289)
T ss_pred CCC-eEEEeehHHHH--hcc-------HHHHHHH-----------HHHHHHcCCcEE-ccccCCCHHHHHHHHHhcCCCe
Confidence 222 33368888765 222 4444544 334456676666 6665444445666777777788
Q ss_pred ccCCCCCCccchhhhHHHHHHhcCCceeEEE
Q 010460 303 GGDDFKSGQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 303 ~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
.=+=..-|.|.+-++ +-|.+.|++..++=
T Consensus 206 ~~N~t~~g~tp~~~~--~~L~~~Gv~~V~~~ 234 (289)
T COG2513 206 PANITEFGKTPLLTV--AELAELGVKRVSYG 234 (289)
T ss_pred eeEeeccCCCCCcCH--HHHHhcCceEEEEC
Confidence 777777788887776 88999999988763
No 31
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.59 E-value=35 Score=33.88 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=41.4
Q ss_pred HHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccc-cCCCCCCccchhhhHHHHHHhcCCceeEEEEee
Q 010460 268 AIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIG-GDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYN 336 (510)
Q Consensus 268 A~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~-GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N 336 (510)
|..|+++|+.|| -|| .+.|.+++.|.++++++. |-- |. |- +....+.|.....++=-+
T Consensus 80 a~~a~~aGA~Fi-vsP--~~~~~vi~~a~~~~i~~iPG~~-----Tp--tE-i~~a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 80 LAQAIEAGAQFI-VSP--GLTPPLLKAAQEGPIPLIPGVS-----TP--SE-LMLGMELGLRTFKFFPAE 138 (212)
T ss_pred HHHHHHcCCCEE-ECC--CCCHHHHHHHHHcCCCEeCCCC-----CH--HH-HHHHHHCCCCEEEEccch
Confidence 677889999999 677 368899999999999876 532 22 11 333566777777775433
No 32
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=35.11 E-value=38 Score=34.07 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=49.1
Q ss_pred cChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEeeecCC
Q 010460 261 ISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGN 340 (510)
Q Consensus 261 ispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~N~LGN 340 (510)
++|-++ .+|+.+|+-|| .||. +-|.+++.|.++|+|+.= |- +.-.=+-...+.|.+....+--+.+|.
T Consensus 73 L~~~q~--~~a~~aGa~fi-VsP~--~~~ev~~~a~~~~ip~~P-----G~--~TptEi~~Ale~G~~~lK~FPa~~~Gg 140 (211)
T COG0800 73 LNPEQA--RQAIAAGAQFI-VSPG--LNPEVAKAANRYGIPYIP-----GV--ATPTEIMAALELGASALKFFPAEVVGG 140 (211)
T ss_pred cCHHHH--HHHHHcCCCEE-ECCC--CCHHHHHHHHhCCCcccC-----CC--CCHHHHHHHHHcChhheeecCccccCc
Confidence 555554 45778999999 8895 689999999999999642 11 112223344567888888888887766
Q ss_pred cc
Q 010460 341 ND 342 (510)
Q Consensus 341 ~D 342 (510)
-+
T Consensus 141 ~~ 142 (211)
T COG0800 141 PA 142 (211)
T ss_pred HH
Confidence 54
No 33
>PRK06740 histidinol-phosphatase; Validated
Probab=33.40 E-value=1.2e+02 Score=31.92 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHHhcCCce-eeCC-----CCCCCc--cchHHHHHHhCCc-cccCCCCC----CccchhhhHHHHHHhcCCceeEEEE
Q 010460 268 AIACVLENIPF-INGS-----PQNTFV--PGLIDLAIRRNCL-IGGDDFKS----GQTKMKSVLVDFLVGAGIKPTSIVS 334 (510)
Q Consensus 268 A~AAi~eg~~f-INgs-----Pq~t~v--P~l~elAe~~gvp-i~GdD~KS----GqT~lksvLa~~L~~rGlkv~s~~s 334 (510)
+.|+.+.|+++ ||.+ |-..+- +.++++|.+.|++ +.|+|-=+ |. .-....+++.+.|++...++.
T Consensus 245 ~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~--~~~~a~~~l~~~G~~~i~~f~ 322 (331)
T PRK06740 245 ARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGK--YVEENVKTLRNHGVTSLATFT 322 (331)
T ss_pred HHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHh--HHHHHHHHHHHcCCcEEEEEe
Confidence 35666789999 9986 433333 4799999999988 78999766 44 113467899999999887664
No 34
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.34 E-value=2.5e+02 Score=30.36 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCeEEEE------EccCCCccccccccccccHHHHHhhcccCCCc-cCh---hHHHHHHHHhc--CCceee
Q 010460 213 IREFKEKNKVDRVVVL------WTANTERYSNVIVGLNDTVENLLASLDKNEAE-ISP---STLYAIACVLE--NIPFIN 280 (510)
Q Consensus 213 Ir~Fk~~~~ld~vVVl------wtAsTEr~~~~~~~~~dt~e~L~~al~~~~~e-isp---S~~YA~AAi~e--g~~fIN 280 (510)
|+++-++.|++-+++. ...-++.|..+.+ -..|.+++.++-.+...= +.+ +..++-..+++ |.||+.
T Consensus 173 i~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~-~g~~~~~i~~~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~ 251 (429)
T cd03466 173 IKEILREFGIEYILLPDTSETLDGPFWGEYHRLPS-GGTPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYR 251 (429)
T ss_pred HHHHHHHcCCCeEEecCccccccCCCCCCcceeCC-CCCCHHHHHhhccCcEEEEEccCccchHHHHHHHHHHHCCCeee
Confidence 5566677787765532 3334444544333 245778888865432111 243 66666566654 999987
Q ss_pred C-CCCC---CCccchHHHHHHhCCcc----------------------ccCCCC-CCccchhhhHHHHHHhcCCceeEEE
Q 010460 281 G-SPQN---TFVPGLIDLAIRRNCLI----------------------GGDDFK-SGQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 281 g-sPq~---t~vP~l~elAe~~gvpi----------------------~GdD~K-SGqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
. .|-- | .--+.++++-.|.++ .|.=+- .|..-.=-.|+.||.+.|++|....
T Consensus 252 ~~~P~G~~~t-~~~l~~l~~~~g~~~~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~ 330 (429)
T cd03466 252 LPLPIGLRAT-DEFMSLLSKLTGKPIPEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITRFVLENGMVPVLIA 330 (429)
T ss_pred cCCCcChHHH-HHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5 4421 1 122333333333222 111000 0444455678999999999996544
Q ss_pred E
Q 010460 334 S 334 (510)
Q Consensus 334 s 334 (510)
.
T Consensus 331 ~ 331 (429)
T cd03466 331 T 331 (429)
T ss_pred e
Confidence 3
No 35
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=33.03 E-value=1.6e+02 Score=32.36 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=28.6
Q ss_pred ceeecccCCCcccccccccCCCCCCCCCeeeeeccCCCCCHHHHHH
Q 010460 109 SAIRVGSYNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMA 154 (510)
Q Consensus 109 st~rlg~~~~~~~~~p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~ 154 (510)
.++++| |+.+ -|+--.++.||.=|.+.=||+-..++.+++.
T Consensus 91 kav~iG---GEtv--fyrhE~~~~npp~ia~dV~D~~~~~~~~~i~ 131 (389)
T TIGR00381 91 KTVTLG---GQRA--LYRFEEPQPNPPVVTFDVFDIPMPGLPKPIR 131 (389)
T ss_pred eeEEEC---Cccc--ceecCcCCCCCCeEEEEEecCCccccHHHHH
Confidence 456677 6663 3455689999999999999985555545443
No 36
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=32.34 E-value=20 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=17.7
Q ss_pred HHhcCCce-----eeCCCCCCCccchHHHHHHhCCcc
Q 010460 271 CVLENIPF-----INGSPQNTFVPGLIDLAIRRNCLI 302 (510)
Q Consensus 271 Ai~eg~~f-----INgsPq~t~vP~l~elAe~~gvpi 302 (510)
||.+|+-| ..++| +-|++..+|+++++||
T Consensus 43 ~i~AGvefieVYg~~~~p---~~~~ll~~c~~r~Ipv 76 (115)
T PF04705_consen 43 SIRAGVEFIEVYGSDGSP---VPPELLAACRQRGIPV 76 (115)
T ss_dssp HHCTT-EEEEEEEETTS------CCCCHHHHCTT--E
T ss_pred HHhcCcEEEEEeeecCCC---CChHHHHHHHhcCCce
Confidence 44555555 46777 7899999999999986
No 37
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.35 E-value=1.2e+02 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=13.2
Q ss_pred hhHHHHHHhcCCceeEEE
Q 010460 316 SVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 316 svLa~~L~~rGlkv~s~~ 333 (510)
+.|-++|..-|+++...+
T Consensus 174 ~el~~lL~~~Gl~v~~~~ 191 (410)
T cd01968 174 WGVKPLLEKLGIRVLASI 191 (410)
T ss_pred HHHHHHHHHcCCeEEEEe
Confidence 356778888888887754
No 38
>PF07878 DUF1662: Protein of unknown function (DUF1662); InterPro: IPR012869 The proteins in this family have not been characterised, but contain a ribbon-helix-helix domain, making them a family of putative repressors.
Probab=29.93 E-value=48 Score=26.70 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=26.9
Q ss_pred ccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCc
Q 010460 288 VPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIK 328 (510)
Q Consensus 288 vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlk 328 (510)
...+.+|+++.+. .... .++..+++||++|||.
T Consensus 18 ~eeL~~la~~~~r-------~~~~-~l~~~ic~~Li~r~Is 50 (55)
T PF07878_consen 18 CEELLALAEQENR-------TVSN-PLFTWICDFLINRSIS 50 (55)
T ss_pred HHHHHHHHHHHcC-------cccc-hhHHHHHHHHHHHHHH
Confidence 4668888888774 2366 9999999999999986
No 39
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=29.25 E-value=2.1e+02 Score=31.51 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=65.5
Q ss_pred HHHHHHhcCCCeEEEEEcc------CCCccccccccccccHHHHHhhcccCCCc-cChhHHHHHHHHhc--CCceeeC-C
Q 010460 213 IREFKEKNKVDRVVVLWTA------NTERYSNVIVGLNDTVENLLASLDKNEAE-ISPSTLYAIACVLE--NIPFING-S 282 (510)
Q Consensus 213 Ir~Fk~~~~ld~vVVlwtA------sTEr~~~~~~~~~dt~e~L~~al~~~~~e-ispS~~YA~AAi~e--g~~fINg-s 282 (510)
|++.-+..|++-+++--.+ -+++|..+..+ ..|.+.+.++-.+.-.= ++|+..++-..+++ |+||+.. +
T Consensus 187 lk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~g-g~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~ 265 (455)
T PRK14476 187 LREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLG-GTTLEEIRELGRSAATIAIGESMRKAAEALEARTGVPYLVFPS 265 (455)
T ss_pred HHHHHHHcCCceEEecCccccccCCCCCcccccCCC-CCCHHHHHhhccCcEEEEecHHHHHHHHHHHHHhCCCeEecCC
Confidence 3344456777765543332 12333332222 34678887764432111 46777776666654 9999987 4
Q ss_pred CCCCC---ccchHHHHHHhCCcc----------------------ccCCCCC-CccchhhhHHHHHHhcCCceeEEEEee
Q 010460 283 PQNTF---VPGLIDLAIRRNCLI----------------------GGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSYN 336 (510)
Q Consensus 283 Pq~t~---vP~l~elAe~~gvpi----------------------~GdD~KS-GqT~lksvLa~~L~~rGlkv~s~~s~N 336 (510)
|- .+ .--+.++++..|.++ .|.-+-= |.--.--.|+.||.+-|++|..++...
T Consensus 266 p~-G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~elG~~v~~~~~~~ 344 (455)
T PRK14476 266 LT-GLEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEMGAEIVAAVTTT 344 (455)
T ss_pred Cc-ChHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 41 11 122344444333321 1211100 222244568999999999999998875
No 40
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=29.17 E-value=79 Score=34.65 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEEEccCCCcccc
Q 010460 214 REFKEKNKVDRVVVLWTANTERYSN 238 (510)
Q Consensus 214 r~Fk~~~~ld~vVVlwtAsTEr~~~ 238 (510)
+++..+.+++|.||++..+.|++..
T Consensus 186 ~~~l~~~~~~~tvvv~atsd~~~~~ 210 (418)
T TIGR03498 186 EDDLGEEGLKRSVVVVATSDESPLM 210 (418)
T ss_pred HHhhhccccceeEEEEECCCCCHHH
Confidence 3445567899999999999986553
No 41
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.65 E-value=1.5e+02 Score=30.32 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHhc--CCceeeCCCCCC-CccchHHHHHHhCCcccc--CCCC----CCccc--hhhhHHHHHHhcCCcee
Q 010460 262 SPSTLYAIACVLE--NIPFINGSPQNT-FVPGLIDLAIRRNCLIGG--DDFK----SGQTK--MKSVLVDFLVGAGIKPT 330 (510)
Q Consensus 262 spS~~YA~AAi~e--g~~fINgsPq~t-~vP~l~elAe~~gvpi~G--dD~K----SGqT~--lksvLa~~L~~rGlkv~ 330 (510)
|++.--+.||+++ |.+.||..---. ..+.+.+++.+.|+++.. .|-+ |-|.. +=.-+++.+...|+.+.
T Consensus 76 T~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~ 155 (261)
T PRK07535 76 SPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPE 155 (261)
T ss_pred CCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHh
Confidence 4455567788887 999999976532 378999999999999774 2212 11111 11235666778888765
Q ss_pred EEE
Q 010460 331 SIV 333 (510)
Q Consensus 331 s~~ 333 (510)
.++
T Consensus 156 ~Ii 158 (261)
T PRK07535 156 DIY 158 (261)
T ss_pred HEE
Confidence 543
No 42
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=28.28 E-value=2.7e+02 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEccCCCccccccccccccHHHHHh
Q 010460 205 QMLQIIKDIREFKEKNKVDRVVVLWTANTERYSNVIVGLNDTVENLLA 252 (510)
Q Consensus 205 ~~e~ir~DIr~Fk~~~~ld~vVVlwtAsTEr~~~~~~~~~dt~e~L~~ 252 (510)
.+++|.+.+++|.++.+ .+|. +- |. +++|+||+.+.+.+
T Consensus 240 ~l~~ll~~l~~~~~~~g-~~Vt-ie------yv-LI~GvNDs~e~a~~ 278 (355)
T TIGR00048 240 NIETLLAAVRRYLNKTG-RRVT-FE------YV-LLDGVNDQVEHAEE 278 (355)
T ss_pred CHHHHHHHHHHHHHHhC-CEEE-EE------EE-EECCCCCCHHHHHH
Confidence 46888888888877776 2333 22 22 68899998766543
No 43
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=27.85 E-value=5.3e+02 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred CcccccccccCCCCCCCCCeeeeeccCCC
Q 010460 118 GEEIYAPFKSILPMVNPDDIVFGGWDISD 146 (510)
Q Consensus 118 ~~~~~~p~~~~lPm~~~~dlv~GGwDI~~ 146 (510)
|+++. |+--.++.||--|.+-=||.-+
T Consensus 77 GEtvL--~rhe~tf~np~~Ia~eI~D~l~ 103 (450)
T PRK04165 77 GETVL--YRHEKTFFNPTGIAVDVSDTMD 103 (450)
T ss_pred Cccee--eecCcCCCCCCEEEEEEeCCCC
Confidence 56654 7778999999998877777643
No 44
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.18 E-value=4e+02 Score=27.72 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 010460 205 QMLQIIKDIREFKEKN 220 (510)
Q Consensus 205 ~~e~ir~DIr~Fk~~~ 220 (510)
..|+++++|+.+|+..
T Consensus 46 ~~~~l~~~i~~~~~~t 61 (307)
T TIGR03151 46 PPDVVRKEIRKVKELT 61 (307)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3688999999999864
No 45
>PRK06813 homoserine dehydrogenase; Validated
Probab=24.54 E-value=2.5e+02 Score=30.02 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHhcCCceeeC--CCCCCCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEEE
Q 010460 262 SPSTLYAIACVLENIPFING--SPQNTFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVS 334 (510)
Q Consensus 262 spS~~YA~AAi~eg~~fINg--sPq~t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s 334 (510)
.|+.-|..+||+.|+..|-. .|-....+.+.++|+++|+.+.=.===.|.+++=+.| + +..+|=++.++..
T Consensus 102 e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l-~-~~~~g~~I~~i~G 174 (346)
T PRK06813 102 NPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIG-Q-FSLAGCHIEKIEG 174 (346)
T ss_pred hHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH-h-hhcccCcEEEEEE
Confidence 46778999999999999733 2322234889999999998654111011788887777 3 6667888888876
No 46
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=24.20 E-value=43 Score=31.58 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=29.8
Q ss_pred hCCccccCCCCCCccchhhhHHHHHHhcCCcee
Q 010460 298 RNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPT 330 (510)
Q Consensus 298 ~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~ 330 (510)
++++|.|.|--+|-|.+-..|+..|..+|.++-
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 357899999999999999999999999999983
No 47
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=23.73 E-value=1.3e+02 Score=32.79 Aligned_cols=108 Identities=20% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHHHhcCCCeEEEEEccCCCcccccccc--------------------ccccHHHHHhhcc-----cCCC----ccCh
Q 010460 213 IREFKEKNKVDRVVVLWTANTERYSNVIVG--------------------LNDTVENLLASLD-----KNEA----EISP 263 (510)
Q Consensus 213 Ir~Fk~~~~ld~vVVlwtAsTEr~~~~~~~--------------------~~dt~e~L~~al~-----~~~~----eisp 263 (510)
++++++...++|.||++..+.|++..-.-. +-|+.-.+-.|.. .+++ -.+|
T Consensus 182 ~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~ 261 (411)
T TIGR03496 182 IEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPP 261 (411)
T ss_pred HHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCH
Confidence 456778889999999999988876431111 1222222222211 2222 2677
Q ss_pred hHHHHHHHHhcCCcee-eCCCCCCCccchHHHHHHhCCccccCCCCC-------CccchhhhHHHHHHhcCCce
Q 010460 264 STLYAIACVLENIPFI-NGSPQNTFVPGLIDLAIRRNCLIGGDDFKS-------GQTKMKSVLVDFLVGAGIKP 329 (510)
Q Consensus 264 S~~YA~AAi~eg~~fI-NgsPq~t~vP~l~elAe~~gvpi~GdD~KS-------GqT~lksvLa~~L~~rGlkv 329 (510)
|.+|..+.+.|.+.-. ++.-+-|.+|.+ .+-|||+.. +-|-.|=+|-.-|+++|+.|
T Consensus 262 ~~f~~l~~l~ERag~~~~~~GSIT~~~tv---------~~~~dd~~dpi~~~~~~i~dg~ivLsr~la~~g~~P 326 (411)
T TIGR03496 262 SVFAKLPQLVERAGNGEEGKGSITAFYTV---------LVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYP 326 (411)
T ss_pred HHHHHhHHHHHHhcccCCCCcceeEEEEE---------EccCCCCCCcchhhhcccccEEEEEchhHHhCCCCC
Confidence 7777888887766654 334445555543 344556422 33333334455566778776
No 48
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=23.71 E-value=6.4e+02 Score=30.13 Aligned_cols=132 Identities=8% Similarity=0.004 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-eEEEEEccCCCcccc--ccc---------ccc-ccHHHHHhhcccCCC---------
Q 010460 202 KKEQMLQIIKDIREFKEKNKVD-RVVVLWTANTERYSN--VIV---------GLN-DTVENLLASLDKNEA--------- 259 (510)
Q Consensus 202 k~e~~e~ir~DIr~Fk~~~~ld-~vVVlwtAsTEr~~~--~~~---------~~~-dt~e~L~~al~~~~~--------- 259 (510)
-+..+++|.+.=..|+++.|++ +|+-+=..+...+.+ +.. ... ...+.+++.|...+.
T Consensus 470 G~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~vvVd~t 549 (810)
T PRK09466 470 GSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWLRAHPYDELVVLDVT 549 (810)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHHhhcCCCCcEEEECC
Confidence 4677888888777888999988 444443333332221 000 000 122444455432221
Q ss_pred -ccChhHHHHHHHHhcCCceeeCCCCC-----CCccchHHHHHHhCCccccCCCCCCccchhhhHHHHHHhcCCceeEEE
Q 010460 260 -EISPSTLYAIACVLENIPFINGSPQN-----TFVPGLIDLAIRRNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 260 -eispS~~YA~AAi~eg~~fINgsPq~-----t~vP~l~elAe~~gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
..+++..|. +|++.|+.-|-.-=.. ..-+.+.++|+++|+.+.=.===.|.+++=..|-+++. .|=++.++.
T Consensus 550 ~~~~~~~~~~-~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l~~l~~-~gd~i~~i~ 627 (810)
T PRK09466 550 ASEQLALQYP-DFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTVRDLRN-SGDSILAIS 627 (810)
T ss_pred CChHHHHHHH-HHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHHHHHHh-ccCcEEEEE
Confidence 112456666 9999999997432211 23578999999999887622111288888777777554 488887777
Q ss_pred Ee
Q 010460 334 SY 335 (510)
Q Consensus 334 s~ 335 (510)
..
T Consensus 628 GI 629 (810)
T PRK09466 628 GI 629 (810)
T ss_pred EE
Confidence 63
No 49
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.29 E-value=69 Score=33.76 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=42.0
Q ss_pred ccCCCCCHHHHHHHCCCCCHhHHHHHHHhhhhcCCCCCCCChhhhhhhccccCCCCccCCHHHHHHHHHHHHHHHHHhcC
Q 010460 142 WDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMLQIIKDIREFKEKNK 221 (510)
Q Consensus 142 wDI~~~nl~ea~~ra~Vl~~~l~~~l~~~l~~~~p~p~v~~~~fia~nq~~ra~nv~~g~k~e~~e~ir~DIr~Fk~~~~ 221 (510)
=|=.+-.-.|+|+| |.+-|-.+++.+.+..-+ |+ |++ -++.++++|++-|..-.+++|
T Consensus 221 pDGaGks~eecmrR-------laR~vCaDleelg~~~v~---d~--A~~----------~~~~~l~~l~e~I~~~a~r~g 278 (330)
T COG1548 221 PDGAGKSREECMRR-------LARTVCADLEELGEEEVI---DL--AEK----------AYNALLELLAENIEEKAKRYG 278 (330)
T ss_pred CCCCCCCHHHHHHH-------HHHHHhCCHHHcChhHHH---HH--HHH----------HHHHHHHHHHHHHHHHHHHcC
Confidence 34456667899995 444444455544332110 00 111 378999999999999999999
Q ss_pred CCeEEE
Q 010460 222 VDRVVV 227 (510)
Q Consensus 222 ld~vVV 227 (510)
|+.||.
T Consensus 279 L~~Vv~ 284 (330)
T COG1548 279 LNTVVA 284 (330)
T ss_pred hhhhhh
Confidence 999875
No 50
>PF13890 Rab3-GTPase_cat: Rab3 GTPase-activating protein catalytic subunit
Probab=23.10 E-value=1.9e+02 Score=28.09 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=48.8
Q ss_pred cccccCccccceeecccCCCcccccccccCCCCCCCCCeeeeeccCCCCCHHHHHHHCCCCCHhHHHHHHHhhhhcCCCC
Q 010460 99 ANYFGSLTQASAIRVGSYNGEEIYAPFKSILPMVNPDDIVFGGWDISDMNLADAMARARVFDIDLQKQLRPYMESMVPLP 178 (510)
Q Consensus 99 ~n~~Gsvtq~st~rlg~~~~~~~~~p~~~~lPm~~~~dlv~GGwDI~~~nl~ea~~ra~Vl~~~l~~~l~~~l~~~~p~p 178 (510)
....|++.+.+.++|-.. |+.+|+|+-.-.|. +..|++++=...|..+
T Consensus 8 ~~~~G~~~~~~~~~Ll~~-gepl~~P~tQ~~~p---------------------------~TeD~l~e~~e~l~~l---- 55 (164)
T PF13890_consen 8 SKPEGRLKPHGNLRLLET-GEPLYIPITQEPPP---------------------------MTEDMLEEQEEELLKL---- 55 (164)
T ss_pred ccCCcccccCCCceeeCC-CCEeecCCCCCCCC---------------------------CcHHHHHHHHHHHHhc----
Confidence 445788888887777654 88899998753332 2345555555555544
Q ss_pred CCCChhhhhhhccccCCCCccC---CHHHHHHHHHHHHHHHHHhcCC
Q 010460 179 GIYDPDFIAANQGSRANNVIKG---TKKEQMLQIIKDIREFKEKNKV 222 (510)
Q Consensus 179 ~v~~~~fia~nq~~ra~nv~~g---~k~e~~e~ir~DIr~Fk~~~~l 222 (510)
+....| .-+-+-+.|..|+..||..|.-
T Consensus 56 ----------------g~~~~~~~~r~~mQs~~LlSDM~aFKAANpg 86 (164)
T PF13890_consen 56 ----------------GTSAEGSELRARMQSASLLSDMQAFKAANPG 86 (164)
T ss_pred ----------------ccchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 111112 1244778999999999999863
No 51
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.50 E-value=5.6e+02 Score=27.56 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCCeEEEEEccC------CCccccccccccccHHHHHhhcccCCCc-cCh-hHHHHHHHHhc--CCceeeC
Q 010460 212 DIREFKEKNKVDRVVVLWTAN------TERYSNVIVGLNDTVENLLASLDKNEAE-ISP-STLYAIACVLE--NIPFING 281 (510)
Q Consensus 212 DIr~Fk~~~~ld~vVVlwtAs------TEr~~~~~~~~~dt~e~L~~al~~~~~e-isp-S~~YA~AAi~e--g~~fINg 281 (510)
.|++.-++.|++-+++...++ +++|+.+..+ ..|.+.+.++-.+...= +.| +..++-..+++ |+||+.+
T Consensus 173 el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~g-g~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~ 251 (428)
T cd01965 173 EIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKG-GTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILF 251 (428)
T ss_pred HHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCC-CCcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeec
Confidence 355566678887666555443 2344443333 35678888764442211 577 77777777764 9999988
Q ss_pred C-CCCC--CccchHHHHHHhCCc----------------------cccCCCCC-CccchhhhHHHHHHhcCCceeEEEEe
Q 010460 282 S-PQNT--FVPGLIDLAIRRNCL----------------------IGGDDFKS-GQTKMKSVLVDFLVGAGIKPTSIVSY 335 (510)
Q Consensus 282 s-Pq~t--~vP~l~elAe~~gvp----------------------i~GdD~KS-GqT~lksvLa~~L~~rGlkv~s~~s~ 335 (510)
. |--. ..--+.++++..|.+ +.|.-+-= |..-.--.|+.||.+.|..|..++..
T Consensus 252 ~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~ 331 (428)
T cd01965 252 PTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTG 331 (428)
T ss_pred CCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEc
Confidence 7 5210 011122233222222 12222110 33334457999999999999887774
Q ss_pred e
Q 010460 336 N 336 (510)
Q Consensus 336 N 336 (510)
.
T Consensus 332 ~ 332 (428)
T cd01965 332 T 332 (428)
T ss_pred C
Confidence 3
No 52
>PRK08392 hypothetical protein; Provisional
Probab=22.07 E-value=1.6e+02 Score=28.56 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHhcCCce-eeCCCCCCCccchHHHHHHhCCc-cccCCCCC----CccchhhhHHHHHHhcCCceeEEE
Q 010460 268 AIACVLENIPF-INGSPQNTFVPGLIDLAIRRNCL-IGGDDFKS----GQTKMKSVLVDFLVGAGIKPTSIV 333 (510)
Q Consensus 268 A~AAi~eg~~f-INgsPq~t~vP~l~elAe~~gvp-i~GdD~KS----GqT~lksvLa~~L~~rGlkv~s~~ 333 (510)
+.+|.+.|+++ ||..+.. ..+.++++|.+.|++ +.|.|-=+ |. +.. ..+++++.|+.+...+
T Consensus 143 ~~~~~~~g~~lEiNt~~~~-p~~~~l~~~~~~G~~~~igSDAH~~~~vg~--~~~-a~~~~~~~g~~~~~~~ 210 (215)
T PRK08392 143 LDLAEAYGKAFEISSRYRV-PDLEFIRECIKRGIKLTFASDAHRPEDVGN--VSW-SLKVFKKAGGKKEDLL 210 (215)
T ss_pred HHHHHHhCCEEEEeCCCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHCCc--HHH-HHHHHHHcCCCHHHee
Confidence 56777889999 9986532 245699999999987 78999665 64 544 5778999999876554
No 53
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.15 E-value=3.5e+02 Score=30.13 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCccChhHHHHHHHHhcCCceeeCCCCCCCccchHHHHHHh--CCccccCCCCCCccchhhhHHHHHHhcCCceeEEEEe
Q 010460 258 EAEISPSTLYAIACVLENIPFINGSPQNTFVPGLIDLAIRR--NCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSY 335 (510)
Q Consensus 258 ~~eispS~~YA~AAi~eg~~fINgsPq~t~vP~l~elAe~~--gvpi~GdD~KSGqT~lksvLa~~L~~rGlkv~s~~s~ 335 (510)
++-|||..-.-.+|...|++.+ +-+|||-+. ..|+.|=-+-.|.|-..+-++.+|...|.+. ...=
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~----------~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~--~lgG 143 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEII----------GDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDA--LLGG 143 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEE----------eHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCc--eecc
Confidence 4667777777777777777755 677777764 5777766665588889999999999999965 3444
Q ss_pred eecC
Q 010460 336 NHLG 339 (510)
Q Consensus 336 N~LG 339 (510)
||+.
T Consensus 144 NIG~ 147 (448)
T COG0771 144 NIGT 147 (448)
T ss_pred ccCc
Confidence 4443
Done!