Query 010461
Match_columns 510
No_of_seqs 125 out of 1099
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 00:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3670 Lignostilbene-alpha,be 100.0 2E-114 4E-119 873.8 32.9 458 23-510 20-489 (490)
2 PLN02258 9-cis-epoxycarotenoid 100.0 3E-109 6E-114 891.6 44.8 454 24-509 114-583 (590)
3 PF03055 RPE65: Retinal pigmen 100.0 9E-110 2E-114 894.2 36.9 466 26-509 1-486 (486)
4 PLN02491 carotenoid 9,10(9',10 100.0 6E-107 1E-111 872.5 43.8 456 23-509 50-536 (545)
5 PLN02969 9-cis-epoxycarotenoid 100.0 1E-103 3E-108 857.1 44.1 467 23-509 58-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.8E-64 3.9E-69 535.9 28.8 461 40-509 36-575 (582)
7 KOG1285 Beta, beta-carotene 15 99.8 9.2E-19 2E-23 187.2 13.3 281 25-322 108-406 (582)
8 PF02239 Cytochrom_D1: Cytochr 65.2 31 0.00068 36.0 8.8 75 405-495 45-119 (369)
9 COG3823 Glutamine cyclotransfe 43.4 17 0.00038 34.8 2.3 37 149-187 95-132 (262)
10 TIGR02276 beta_rpt_yvtn 40-res 37.1 99 0.0021 20.4 4.9 27 475-502 13-39 (42)
11 PF06433 Me-amine-dh_H: Methyl 36.3 5.1E+02 0.011 26.9 18.7 37 461-497 248-290 (342)
12 PF13570 PQQ_3: PQQ-like domai 31.5 54 0.0012 22.0 2.7 28 146-175 13-40 (40)
13 TIGR03866 PQQ_ABC_repeats PQQ- 26.4 4.2E+02 0.0092 25.2 9.3 67 424-501 229-295 (300)
14 PF02239 Cytochrom_D1: Cytochr 25.5 1.1E+02 0.0024 31.9 5.1 85 395-495 272-358 (369)
15 PF05262 Borrelia_P83: Borreli 22.8 2E+02 0.0044 31.3 6.4 71 411-488 362-432 (489)
No 1
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-114 Score=873.77 Aligned_cols=458 Identities=29% Similarity=0.464 Sum_probs=384.8
Q ss_pred cCcCcCccccceeeeeeeeE-EEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeC-CeEEEeeeccCc
Q 010461 23 HRNHVAWTSVKQERWEGELV-VEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKN-GRLIAGHRQIET 100 (510)
Q Consensus 23 ~~~~~~~~~~~~E~~~~~l~-V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~d-G~v~y~~R~V~T 100 (510)
..|.++|+|+++|.+...|+ |+|+||++|+|||||||||++++++...+||||||||||+|.|. | |+|+||||||||
T Consensus 20 ~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~-~gg~a~yrnrfVrT 98 (490)
T COG3670 20 PYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFR-DGGRATYRNRFVRT 98 (490)
T ss_pred hhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEec-CCCceEEEEEEEee
Confidence 48999999999999888888 99999999999999999999999999999999999999999999 8 599999999999
Q ss_pred HHHHHHHHcCCcccccccCCCCCc-chHHHHHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCCCCcee
Q 010461 101 EAYKAAKKNKKLCYREFSVSPKPD-NFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTL 179 (510)
Q Consensus 101 ~~~~~e~~ag~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~TLeT~ 179 (510)
.+|.+|++|||+||+++++.+.+. .+-++ ....||.|||||+.|+ ++|+||||+| .||+|||.||+|+
T Consensus 99 ~g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~---------~~~lkn~aNTsVi~~~-~~LlalwEgG-~pyrLdp~tL~Tl 167 (490)
T COG3670 99 QGYLAENEAGKPLWGGLGETQPPGVRPHSR---------TGDLKNAANTSVIMHG-DELLALWEGG-SPYRLDPDTLETL 167 (490)
T ss_pred ceeehhhhcCcceeccccccCCCCcCcCcc---------ccccccCCccceEeeh-hHHHHHHhcC-CccccChhHhhhc
Confidence 999999999999999987743221 11000 2357999999999998 8999999998 6999999999999
Q ss_pred cccccCCCCCccccCCCCccCCC--CceecccCCCCCcEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecCcEEEE
Q 010461 180 GKFEYSDPLGGFIQSSHPIVTDD--EFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVV 257 (510)
Q Consensus 180 g~~~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTeny~V~ 257 (510)
|+.+|+|.-.+.+||||||+||. |+++|+++...+..+++.++.....++. ..+ .+|.+.|||||++|+||+||
T Consensus 168 G~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~-~~i---~lpg~~~~HDFa~T~~y~If 243 (490)
T COG3670 168 GKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRT-VDI---PLPGPPMMHDFAITENYLIF 243 (490)
T ss_pred ChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEe-eee---ecCCCccceeeeecCceEEE
Confidence 99999996446789999999999 8999999876665567777755432221 123 36899999999999999999
Q ss_pred ecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCCCceeEEEEcCCceeEeeeceeeccCCCCceEEEEeccccc
Q 010461 258 PEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEH 337 (510)
Q Consensus 258 ~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~~~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~iv~D~~~~ 337 (510)
++.|+.+|+...+.+.....+++.|+|+.|+||.||||.+++.|||||+++||+||+.||||+.| | .|.+|+|++
T Consensus 244 ~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d--~---~v~~d~~~~ 318 (490)
T COG3670 244 FDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGD--E---VVLVDFLRY 318 (490)
T ss_pred EeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCC--C---cEEEEEEee
Confidence 99999999644445665567899999999999999999843689999999999999999999987 3 699999999
Q ss_pred CCchhHHhhhhhcccccCCCCCCCCCcceEEEEEecCCCCCcceeeecCCCCcCCcccCCccCCCCCCCCcceeEEeccc
Q 010461 338 NADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAK 417 (510)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~in~~~~g~~yry~y~~~~~ 417 (510)
++ .+...+ ........ .......++|+||+|+|+++++. ++.++ ++++|||+||+++.|++|||+|+++.+
T Consensus 319 ~~-~~~~~~-~~~~~~~g-~~~~~a~~~L~R~~lnl~tg~v~--~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~r 389 (490)
T COG3670 319 DD-FSQTLD-TLGEGPGG-DFRTLAPPRLHRWTLNLKTGKVA--EEQLD----DRACEFPRINPRYVGQPYRYTYMSGAR 389 (490)
T ss_pred cc-cccccc-cccccccc-cccccCCCcceEEEEccccchhH--HHhhh----hhhcccCccChhhcCCceEEEEEeccc
Confidence 83 211111 11111110 00111258999999999987642 33444 478999999999999999999999766
Q ss_pred CCCCCCCe---EEEEeccCCCeeEEe-cCCccCCccEEeeCCCCCCCCCcEEEEEEEcC-CCceEEEEEecCCccc--eE
Q 010461 418 RPCNFPNS---LTKLDLVKQKAKNWC-EEGIVPSEPLFVARPGATDEDDGVVISMISEK-NGGAYVVLLDGSTFEE--IA 490 (510)
Q Consensus 418 ~~~~~~~~---lvk~D~~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~~--vA 490 (510)
.....+++ |+|+|++||+.+.|+ ++++|++||+|||||++++|||||||++|+|. .++|+|+||||++++. ||
T Consensus 390 p~~~l~~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa 469 (490)
T COG3670 390 PGTFLFQGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIA 469 (490)
T ss_pred CCccchhhcceeEEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcce
Confidence 55445555 999999999999995 89999999999999999999999999999996 5899999999999874 99
Q ss_pred EEEcCCCCCCCcccccccCC
Q 010461 491 RARFPFGLPYGFHGCWVPEN 510 (510)
Q Consensus 491 r~~lP~~iP~GfHG~w~~~~ 510 (510)
|++||++||+||||+|++.+
T Consensus 470 ~l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 470 RLALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred EEeccccccccccccccccc
Confidence 99999999999999999853
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=3e-109 Score=891.58 Aligned_cols=454 Identities=23% Similarity=0.387 Sum_probs=374.1
Q ss_pred CcCcCccccceeeeeeeeEEEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCCeEEEeeeccCcHHH
Q 010461 24 RNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAY 103 (510)
Q Consensus 24 ~~~~~~~~~~~E~~~~~l~V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG~v~y~~R~V~T~~~ 103 (510)
-|+++|+|+++|.+...|+|+|+||+||+|||||||||+.+.+ ...+||||||||||+|+|+ ||+|+|+||||||++|
T Consensus 114 ~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p-~~~~H~FDGDGMvhav~f~-dG~a~y~~RfVrT~~~ 191 (590)
T PLN02258 114 QIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEP-VAGHHLFDGDGMVHAVRIG-NGSASYACRFTETNRL 191 (590)
T ss_pred eccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCC-CCCCccccCCceEEEEEEC-CCeEEEEeeeecchhH
Confidence 5689999999999888999999999999999999999976543 3568999999999999999 9999999999999999
Q ss_pred HHHHHcCCccccc-ccCCCCCcchHHH----HHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCC---C
Q 010461 104 KAAKKNKKLCYRE-FSVSPKPDNFLAY----VGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPD---T 175 (510)
Q Consensus 104 ~~e~~ag~~~~~~-f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~---T 175 (510)
++|+++||.+|.+ +|+......+... .+.+.+.+.....+|+|||||++|+ ||||||||+| .||+||++ |
T Consensus 192 ~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~-grLlAL~E~g-~Py~l~~d~~~T 269 (590)
T PLN02258 192 VQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFN-GRLLAMSEDD-LPYQVRITGDGD 269 (590)
T ss_pred HHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEEC-CEEEEEEcCC-CceEecCCCCCC
Confidence 9999999999986 7765311111111 1111111112234789999999997 8999999998 59999754 9
Q ss_pred CceecccccCCCCCccccCCCCccCCC--CceecccCCC-CCcEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecC
Q 010461 176 LDTLGKFEYSDPLGGFIQSSHPIVTDD--EFLTLLPDLL-NPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTE 252 (510)
Q Consensus 176 LeT~g~~~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTe 252 (510)
|||+|.++|+|+|. .+||||||+||. |+++|+|... ++.+.++.+++...... ...++ ++.++|||||+|||
T Consensus 270 LeT~G~~df~g~l~-~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~-~~~i~---lp~p~~~HDFaiTe 344 (590)
T PLN02258 270 LETVGRYDFDGQLD-SSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSP-DVEIP---LDQPTMMHDFAITE 344 (590)
T ss_pred cccCcccccCCccC-cccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEe-eEEee---CCCCccccceeccC
Confidence 99999999999995 689999999997 9999999854 46667777876543222 22443 67899999999999
Q ss_pred cEEEEecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCCC--ceeEEEEcCCceeEeeeceeeccCCCCceEEE
Q 010461 253 HYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASG--KIAASVEVPLYMVFHFINAYEEKDKDGRVIAV 330 (510)
Q Consensus 253 ny~V~~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~~--~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~i 330 (510)
||+||+++|+.+++.+++.|+. ++.|++++++||+||||+++ +.++||++|+||+||++|||||++ +| +|
T Consensus 345 nY~Vf~d~Pl~~~~~~~~~g~~----~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~-~~---~V 416 (590)
T PLN02258 345 NFVVIPDQQVVFKLSEMIRGGS----PVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPE-TD---EV 416 (590)
T ss_pred ceEEEEccCceEcHHHHhhCCC----ceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCC-CC---eE
Confidence 9999999999999999988754 68899999999999999974 468999999999999999999754 23 69
Q ss_pred EecccccCCchhHHhhhhhcccccCCCCCCCCCcceEEEEEecCCCCCcceeeecCCCCcCCcccCCccCCCCCCCCcce
Q 010461 331 IADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRY 410 (510)
Q Consensus 331 v~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~in~~~~g~~yry 410 (510)
|+|.|++.. +... +... ....+++|+||+|||+++++. .+.+++.+ ..++|||+||++|.||+|||
T Consensus 417 Vvd~~~~~~-~~~~----~~~~------~~~~~~~L~r~ridl~tg~~~-~~~l~~~~--~~~~EFP~In~~~~Grk~Ry 482 (590)
T PLN02258 417 VVIGSCMTP-PDSI----FNES------DESLRSVLSEIRLNLRTGEST-RRPIISGE--QVNLEAGMVNRNLLGRKTRY 482 (590)
T ss_pred EEEEecccC-hhhh----cccc------cccccceEEEEEEECCCCcee-eeEeecCC--CcccccceECHHHCCCccce
Confidence 999998873 2211 1111 112357899999999987652 23333311 25899999999999999999
Q ss_pred eEEecccCCCCCCCeEEEEeccCCCeeEE-ecCCccCCccEEeeCCCCCC-CCCcEEEEEEEcC-CCceEEEEEecCCcc
Q 010461 411 AYAIGAKRPCNFPNSLTKLDLVKQKAKNW-CEEGIVPSEPLFVARPGATD-EDDGVVISMISEK-NGGAYVVLLDGSTFE 487 (510)
Q Consensus 411 ~y~~~~~~~~~~~~~lvk~D~~tg~~~~w-~~~~~~~~EPvFVPrp~~~~-EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~ 487 (510)
+|++... +...+++|+|+|+++|+.+.| +++++|++||+||||+++++ |||||||++|+|. +++|+|+||||++|+
T Consensus 483 ~Y~~~~~-~~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~ 561 (590)
T PLN02258 483 AYLAIAE-PWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLE 561 (590)
T ss_pred EEEeccC-CCCCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCCCceEEEEEeCCCCc
Confidence 9998654 345689999999999999877 58999999999999999874 9999999999996 689999999999999
Q ss_pred ceEEEEcCCCCCCCcccccccC
Q 010461 488 EIARARFPFGLPYGFHGCWVPE 509 (510)
Q Consensus 488 ~vAr~~lP~~iP~GfHG~w~~~ 509 (510)
+|||++||++||+||||+|+++
T Consensus 562 ~VArv~LP~rVP~GFHG~wv~~ 583 (590)
T PLN02258 562 LEATVKLPSRVPYGFHGTFISA 583 (590)
T ss_pred ccEEEECCCCCCCcccccccCH
Confidence 9999999999999999999985
No 3
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=8.5e-110 Score=894.17 Aligned_cols=466 Identities=35% Similarity=0.661 Sum_probs=345.8
Q ss_pred CcCccccceee-eeeeeEEEecCCCCCceEEEEECCCCCC-CCCccccccCCccccEEEEEEeeCCeEEEeeeccCcHHH
Q 010461 26 HVAWTSVKQER-WEGELVVEGEIPSWLNGTYLRNGPGVWH-IGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAY 103 (510)
Q Consensus 26 ~~~~~~~~~E~-~~~~l~V~G~iP~~L~Gt~~RnGP~~~~-~g~~~~~H~FDGdGmv~~~~f~~dG~v~y~~R~V~T~~~ 103 (510)
.++|+|+++|. +..+++|+|+||+||+|||||||||+++ .++.++.||||||||||+|+|+ +|+|+|+||||||++|
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~-~g~v~y~~R~v~T~~~ 79 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFD-DGRVTYRNRFVRTEGY 79 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEE-TTEEEEEEEE---HHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEEC-CCCceeEEEEeCcHHH
Confidence 47899999999 6667999999999999999999999999 8889999999999999999999 9999999999999999
Q ss_pred HHHHHcCCccccc-ccCCCCCcchHHHHHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCCCCceeccc
Q 010461 104 KAAKKNKKLCYRE-FSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKF 182 (510)
Q Consensus 104 ~~e~~ag~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~TLeT~g~~ 182 (510)
++|+++||.+|++ |++.+.++++...+ ...........+|+|||||++|+ ||||||||+| .||+|||+||||+|.+
T Consensus 80 ~~e~~~g~~~~~g~~gt~~~~~~~~~~~-~~~~~~~~~~~~~~aNt~v~~~~-g~llAl~E~g-~p~~lDp~TLeT~g~~ 156 (486)
T PF03055_consen 80 KAEREAGRRLYRGEFGTVPLPDPCRNIF-RFPMPFFRGKPKNNANTNVIPHG-GRLLALWEGG-PPYELDPDTLETLGPF 156 (486)
T ss_dssp HHHHHHTSS-SC-TTTCTTCSTHHHHTC-HHTTS--GGGB-----SEEEEET-TEEEEE-TTS-EEEEEETTTCEEEEEE
T ss_pred HHHHhcCCceecccccccccCchhhhhh-hhccccccccCCCCceeeeEEEC-CEEEEEEcCC-CCEEechhHhhhcCcc
Confidence 9999999999987 88765434333211 00111223457999999999997 8999999998 6999999999999999
Q ss_pred ccCCCCCccccCCCCccCCC--CceecccCCCC---CcEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecCcEEEE
Q 010461 183 EYSDPLGGFIQSSHPIVTDD--EFLTLLPDLLN---PGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVV 257 (510)
Q Consensus 183 ~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTeny~V~ 257 (510)
+|++.+++..||||||+||+ ++++|++.+.. +.+.++.+++... .+.+++...++.++|||||+||+||+||
T Consensus 157 ~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~iHdf~vT~~Y~V~ 233 (486)
T PF03055_consen 157 DFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGK---KIHRVPSFPLPRPSYIHDFAVTENYVVF 233 (486)
T ss_dssp EGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSE---EEEEEEESCCCS-B-----EE-SSEEEE
T ss_pred cccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccc---eeEEeeeccCCCCcccccccccCceEEE
Confidence 99999998899999999997 99999987543 5688999987752 3445555567889999999999999999
Q ss_pred ecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCCC-ceeEEEEcCCceeEeeeceeeccCCCCceEEEEecccc
Q 010461 258 PEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASG-KIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCE 336 (510)
Q Consensus 258 ~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~~-~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~iv~D~~~ 336 (510)
+++|+++++.+++.|... +++|+|+|+++++|+||||+++ +.|+||++++||+||++||||++++++ +||+|+|+
T Consensus 234 ~~~P~~~~~~~~~~g~~~-~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~~~~~~~H~~NAyE~~dg~~---~iv~d~~~ 309 (486)
T PF03055_consen 234 PDNPLRFDPERLLLGGSP-IDCLKWDPERPTRFHVIPRDGGKSPVRWFEAPPFFVFHFVNAYEDDDGGG---EIVLDACR 309 (486)
T ss_dssp EE-SEEE-HHHHHTTCCT-GGCEEE-TTS-EEEEEEETTTSCCCEEEEEETTCEEEEEEEEEEETTT-T---EEEEEEEE
T ss_pred EECCeEECHHHHhhCCcc-cceEEECCCCCeEEEEEECcCCCceeEEEecCChhhccccceeecCCCce---EEEEEEee
Confidence 999999999999977643 6789999999999999999998 789999999999999999999976333 79999999
Q ss_pred cCCchhHHhhhhhcccccC-CCCCCCCCcceEEEEEecC--CCCCcceeeecCCCCcCC-cccCCccCCCCCCCCcceeE
Q 010461 337 HNADTTIIETLSLKNLRSF-HGQDVLPDARVGRFTIPFD--GSQFGKLETVMDPEEHGR-GVDMCSINPAYLGKKYRYAY 412 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~l~R~~idl~--~~~~~~~~~~l~~~~~~~-~~EfP~in~~~~g~~yry~y 412 (510)
|+ +..+...+.++++... ........++|+||+||++ ++++ .++.++ +. ++|||+||+++.|++|||+|
T Consensus 310 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~--~~~~l~----~~~~~EfP~in~~~~g~~~ry~Y 382 (486)
T PF03055_consen 310 YD-DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRV--SEEPLD----DGNPCEFPRINPRYSGRPYRYVY 382 (486)
T ss_dssp EC-SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEE--EEEEEE----TTEEEEEEEE-GGGTTS--SEEE
T ss_pred cC-CcccccccchhcccccccccccCCCceEEEEEEcccccccee--EHhHhc----cCCCcccceeCcccCCCcccEEE
Confidence 98 5556665555555421 1122445789999999999 4322 234444 23 69999999999999999999
Q ss_pred EecccCC---CCCCCeEEEEeccCCCeeEEe-cCCccCCccEEeeCCCCCCCCCcEEEEEEEcC-CCceEEEEEecCCcc
Q 010461 413 AIGAKRP---CNFPNSLTKLDLVKQKAKNWC-EEGIVPSEPLFVARPGATDEDDGVVISMISEK-NGGAYVVLLDGSTFE 487 (510)
Q Consensus 413 ~~~~~~~---~~~~~~lvk~D~~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~ 487 (510)
+++.... ..++++|+|+|+++|+.+.|. +++++++||+|||||++++|||||||++|+|. +++|+|+||||++|+
T Consensus 383 ~~~~~~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~ 462 (486)
T PF03055_consen 383 AVGMDPERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDTNRSELLVLDAKDLE 462 (486)
T ss_dssp EEEECSCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTTTCEEEEEEETTTTC
T ss_pred EEeecccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCCCCCCCCceEEEEEEEECCCCccEEEEEeCCCCC
Confidence 7654322 356899999999999999996 67999999999999999999999999999996 589999999999999
Q ss_pred c--eEEEEcCCCCCCCcccccccC
Q 010461 488 E--IARARFPFGLPYGFHGCWVPE 509 (510)
Q Consensus 488 ~--vAr~~lP~~iP~GfHG~w~~~ 509 (510)
+ |||++||++||+||||+|+++
T Consensus 463 ~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 463 EGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp E--EEEEEESS---S-SEEEEEE-
T ss_pred cCceEEEECCCCCCCCccccccCC
Confidence 8 999999999999999999974
No 4
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=5.6e-107 Score=872.47 Aligned_cols=456 Identities=22% Similarity=0.341 Sum_probs=363.8
Q ss_pred cCcCcCccccceeee-eeeeEEEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCCeEEEeeeccCcH
Q 010461 23 HRNHVAWTSVKQERW-EGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETE 101 (510)
Q Consensus 23 ~~~~~~~~~~~~E~~-~~~l~V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG~v~y~~R~V~T~ 101 (510)
+-|+++|+|+++|.. ...++|+|+||+||+|||||||||+++.+ ...+||||||||||+|+|+ ||+|+|+||||||+
T Consensus 50 ~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~-~~~~H~FDGDGMlha~~f~-~G~a~y~~RfVrT~ 127 (545)
T PLN02491 50 HYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSP-VAGYHWFDGDGMIHGMRIK-DGKATYVSRYVKTS 127 (545)
T ss_pred ccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCC-CCCCccccCCccEEEEEEc-CCcEEEEeeeeccc
Confidence 478999999999985 67789999999999999999999987544 5678999999999999999 99999999999999
Q ss_pred HHHHHHHcCCcccccccCCCCC-cchHHHHHHHhhhc---cCCCcCCccceeEEEeCCCeEEEeecCCCceeEe---CCC
Q 010461 102 AYKAAKKNKKLCYREFSVSPKP-DNFLAYVGELAKLF---SGASLTDNANNGIYKLGDGRIICLTETQKGSVIV---DPD 174 (510)
Q Consensus 102 ~~~~e~~ag~~~~~~f~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~l---Dp~ 174 (510)
+|++|+++|+.+|..++..... +.....+......+ .....+++|||||++|+ ||||||||++ .||+| ||.
T Consensus 128 ~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~-grLlAl~E~g-~Py~l~~~Dp~ 205 (545)
T PLN02491 128 RLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHH-GKLLALSEAD-KPYVVKVLEDG 205 (545)
T ss_pred chhhhhhcCcccccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEEC-CEEEEEEcCC-CCeEecCCCCC
Confidence 9999999999998864432100 00011111000110 01112689999999997 8999999998 59996 779
Q ss_pred CCceecccccCCCCCccccCCCCccCCC--CceecccCCCCCcEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecC
Q 010461 175 TLDTLGKFEYSDPLGGFIQSSHPIVTDD--EFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTE 252 (510)
Q Consensus 175 TLeT~g~~~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTe 252 (510)
||||+|.+||+|+|. .+||||||+||. |+++|++...++...++.+++....... ..+ .++.++|||||+|||
T Consensus 206 tLeT~G~~df~g~l~-~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~-v~i---~l~~~~~~HDFaiTe 280 (545)
T PLN02491 206 DLQTLGLLDYDKRLK-HSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDP-VPI---TISEPIMMHDFAITE 280 (545)
T ss_pred CcceeeecccCCccC-cccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcce-eEe---ecCCCceeeeeEecC
Confidence 999999999999997 689999999997 9999999875444444555554322221 223 357899999999999
Q ss_pred cEEEEecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCCC--ceeEEEEcCCceeEeeeceeeccCCCCceEEE
Q 010461 253 HYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASG--KIAASVEVPLYMVFHFINAYEEKDKDGRVIAV 330 (510)
Q Consensus 253 ny~V~~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~~--~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~i 330 (510)
||+||+++|+.+++.++++++.. ++.|++++++||+||||+++ +.++||++|+||+||++|||||++ +|
T Consensus 281 ny~Vf~~~Pl~~~~~~~~~~~~~---~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~------~I 351 (545)
T PLN02491 281 NYAIFMDLPLYFRPKEMVKEKKF---IYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEED------EV 351 (545)
T ss_pred CEEEEEECCcccCHHHHhhCCCc---eeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCC------eE
Confidence 99999999999999999877542 58999999999999999764 468999999999999999999764 69
Q ss_pred EecccccCCchhHHhhhhhcccccCCCCCCCCCcceEEEEEecCCCCCcceeeecCCCCcCCcccCCccCCCCCCCCcce
Q 010461 331 IADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRY 410 (510)
Q Consensus 331 v~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~in~~~~g~~yry 410 (510)
|+|+|+|+ ++.+ .... ..+. .......++|+|||||++++.+. ++.++ +.++|||+||+++.||+|||
T Consensus 352 vvd~~~~~-~~~~-~~~~-~~~~---~~~~~~~~~l~r~ridl~tg~~~--~~~l~----~~~~EfP~In~~~~Grk~ry 419 (545)
T PLN02491 352 VLITCRLE-NPDL-DMVN-GKVK---EKLENFGNELYEMRFNMKTGAAS--QKKLS----ASAVDFPRVNESYTGRKQRY 419 (545)
T ss_pred EEEEeccC-CCcc-cccc-cccc---ccccccCceEEEEEEECCCCcee--eeccC----CcccccCccCHHHCCCcccE
Confidence 99999997 3321 0000 0000 00111257899999999876542 33343 46899999999999999999
Q ss_pred eEEecccCCCCCCCeEEEEeccC----CCee---------E-EecCCccCCccEEeeCCCC--CCCCCcEEEEEEEcC-C
Q 010461 411 AYAIGAKRPCNFPNSLTKLDLVK----QKAK---------N-WCEEGIVPSEPLFVARPGA--TDEDDGVVISMISEK-N 473 (510)
Q Consensus 411 ~y~~~~~~~~~~~~~lvk~D~~t----g~~~---------~-w~~~~~~~~EPvFVPrp~~--~~EDDG~Ll~~v~d~-~ 473 (510)
+|++... +...+++|+|+|+++ |+.+ . |++++++++||+||||+++ .+|||||||++|+|. +
T Consensus 420 ~Y~~~~~-~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~ 498 (545)
T PLN02491 420 VYGTILD-SIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENT 498 (545)
T ss_pred EEEeccC-CccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCC
Confidence 9998654 234579999999996 4432 3 4689999999999999754 589999999999996 6
Q ss_pred CceEEEEEecCCcc--ceEEEEcCCCCCCCcccccccC
Q 010461 474 GGAYVVLLDGSTFE--EIARARFPFGLPYGFHGCWVPE 509 (510)
Q Consensus 474 ~~S~L~VlDA~~l~--~vAr~~lP~~iP~GfHG~w~~~ 509 (510)
++|+|+||||++|+ +|||++||+|||+||||+|+++
T Consensus 499 ~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~ 536 (545)
T PLN02491 499 GKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE 536 (545)
T ss_pred CcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCH
Confidence 89999999999998 5999999999999999999985
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=1.4e-103 Score=857.09 Aligned_cols=467 Identities=25% Similarity=0.359 Sum_probs=366.9
Q ss_pred cCcCcCccccceee-eeeee-EEEecCCCCC-ceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCC--eEEEeeec
Q 010461 23 HRNHVAWTSVKQER-WEGEL-VVEGEIPSWL-NGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNG--RLIAGHRQ 97 (510)
Q Consensus 23 ~~~~~~~~~~~~E~-~~~~l-~V~G~iP~~L-~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG--~v~y~~R~ 97 (510)
+.|+++|+|+++|. +..++ +|+|+||+|| +|||||||||+++.+..++.||||||||||+|+|+ +| +|+|+|||
T Consensus 58 ~~~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~-~G~~~v~y~nRf 136 (610)
T PLN02969 58 WDYQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHID-GGDRPVQYSARY 136 (610)
T ss_pred HHhhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEc-CCCeEEEEEeee
Confidence 58999999999998 56777 5999999999 99999999999998766689999999999999999 88 59999999
Q ss_pred cCcHHHHHHHHcCCcccc----c-ccCCCCCcchHHHHHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeC
Q 010461 98 IETEAYKAAKKNKKLCYR----E-FSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVD 172 (510)
Q Consensus 98 V~T~~~~~e~~ag~~~~~----~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lD 172 (510)
|||++|++|+++|+.+++ + |++.. +... .......||+|||||++|+ ||||||||++ .||+||
T Consensus 137 VrT~~~~~E~~ag~~~~~~~~~~pfs~~~-~~~~---------~~~~~~~kn~ANT~V~~~g-g~LlAl~E~g-~P~~lD 204 (610)
T PLN02969 137 VKTEAKKEEHDPETRTWRFTYRGPFSVLK-GGKR---------VGNVKVMKNVANTSVLKWG-GRLLCLWEGG-EPYEID 204 (610)
T ss_pred eccHHHHHHHHhCCcceeeeeccchhccc-CCCC---------cccccccccCCCcceeeeC-CEEEEecCCC-CCeEcC
Confidence 999999999999976653 3 32211 1000 0011236899999999997 8999999998 599999
Q ss_pred CCCCceeccccc-----------------------------CCCCC--ccccCCCCccCCC--CceecccCC-----CCC
Q 010461 173 PDTLDTLGKFEY-----------------------------SDPLG--GFIQSSHPIVTDD--EFLTLLPDL-----LNP 214 (510)
Q Consensus 173 p~TLeT~g~~~~-----------------------------~~~l~--~~~~tAHPk~dp~--e~~~~~~~~-----~~~ 214 (510)
|+||||+|.++| .|.++ ...||||||+||. ++++|++.. .++
T Consensus 205 P~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~ 284 (610)
T PLN02969 205 SGTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRS 284 (610)
T ss_pred cCccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCc
Confidence 999999999998 33333 4579999999998 899999764 235
Q ss_pred cEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecCcEEEEecCCccccHHHHh---ccCCCccceeeecCCCCe-EE
Q 010461 215 GYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLL---KAEPSALYQFEWRPERKA-FL 290 (510)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTeny~V~~~~P~~~~~~~~~---~g~~~~~~~~~w~~~~~t-~~ 290 (510)
.+.++.+++...... ...+ +++.++|||||+|||||+||+++|+++|+.+++ .|....+++|.|+|++++ +|
T Consensus 285 ~~~~y~~d~~G~~~~-~~~~---~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~ 360 (610)
T PLN02969 285 NFTFYEFDADFKLVQ-RKEF---KLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPV 360 (610)
T ss_pred eeEEEEECCCCCEec-ceee---cCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEE
Confidence 688899886543211 1233 367899999999999999999999999988654 344455689999999996 89
Q ss_pred EEEeCCCC---ceeEE---EEcC-CceeEeeeceeeccCCCCceEEEEecccc--cCCchhHHhhhh--hcccc---cCC
Q 010461 291 HVVCKASG---KIAAS---VEVP-LYMVFHFINAYEEKDKDGRVIAVIADCCE--HNADTTIIETLS--LKNLR---SFH 356 (510)
Q Consensus 291 ~VIpR~~~---~~v~~---~~~~-~~f~fH~~NayE~~~~~g~~~~iv~D~~~--~~~~~~~~~~~~--~~~l~---~~~ 356 (510)
+||||+++ +.++| +++| +||+||++||||+++++|+ .+||+|+|. |+ +..+...+. +.... ...
T Consensus 361 ~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~-~~Ivvd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 438 (610)
T PLN02969 361 YLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGN-LRIQLHASACSYQ-WFSFHRMFGYDWQNKKLDPSVM 438 (610)
T ss_pred EEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCc-eEEEEEEeccccc-cccccccccccccccccCcchh
Confidence 99999975 46788 9998 5999999999998654442 258999864 54 333322211 11110 000
Q ss_pred --CCCCCCCcceEEEEEecC-CCCCcce-eeecCCCCcCCcccCCccCCCCCCCCcceeEEecccC-----CCCCCCeEE
Q 010461 357 --GQDVLPDARVGRFTIPFD-GSQFGKL-ETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKR-----PCNFPNSLT 427 (510)
Q Consensus 357 --~~~~~~~~~l~R~~idl~-~~~~~~~-~~~l~~~~~~~~~EfP~in~~~~g~~yry~y~~~~~~-----~~~~~~~lv 427 (510)
.......++|+||+||++ ++.+..+ .+.+.. .++.++|||+||+++.||+|||+|+++... +...+|+|+
T Consensus 439 ~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~-~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~ 517 (610)
T PLN02969 439 NNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSN-QWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVV 517 (610)
T ss_pred cccCcccccceEEEEEEeCCcCCccccccceeecc-ccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEE
Confidence 001113468999999996 4433111 122210 124689999999999999999999886542 123579999
Q ss_pred EEeccCCCeeEEe-cCCccCCccEEeeC---CCCCCCCCcEEEEEEEcC-CCceEEEEEecCCccc----eEEEEcCCCC
Q 010461 428 KLDLVKQKAKNWC-EEGIVPSEPLFVAR---PGATDEDDGVVISMISEK-NGGAYVVLLDGSTFEE----IARARFPFGL 498 (510)
Q Consensus 428 k~D~~tg~~~~w~-~~~~~~~EPvFVPr---p~~~~EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~~----vAr~~lP~~i 498 (510)
|+|+++|+.+.|. +++++++||+|||| |++++|||||||++|+|. .++|+|+||||++|++ |||++||++|
T Consensus 518 K~D~~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v 597 (610)
T PLN02969 518 KLDVPDGSARSWSTGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHL 597 (610)
T ss_pred EEECCCCCEEEEEeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCccc
Confidence 9999999999997 69999999999999 468899999999999996 6899999999999986 9999999998
Q ss_pred --CCCcccccccC
Q 010461 499 --PYGFHGCWVPE 509 (510)
Q Consensus 499 --P~GfHG~w~~~ 509 (510)
|+||||+|++.
T Consensus 598 ~~P~GfHG~w~~~ 610 (610)
T PLN02969 598 TFPMGFHGFWADE 610 (610)
T ss_pred CCCccccccccCC
Confidence 99999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-64 Score=535.85 Aligned_cols=461 Identities=31% Similarity=0.511 Sum_probs=351.0
Q ss_pred eeEEEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCCeEEEeeeccCcHHHHHHHHcCCcccccccC
Q 010461 40 ELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSV 119 (510)
Q Consensus 40 ~l~V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG~v~y~~R~V~T~~~~~e~~ag~~~~~~f~~ 119 (510)
++.+.|.||+||+|+++|||||.+..|...++|||||-+++|+++|. ||+++|++||++|+.|++.....+.+.++|++
T Consensus 36 ~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~-dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~ 114 (582)
T KOG1285|consen 36 ECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFL-DGRVYYSSRYLESDPYKKTVDPNRIVSGEFAP 114 (582)
T ss_pred ccccccccCccccccccCCCCcccccCcccccccccchhhhhheeec-CCeEEEEeeecccCCcccccccceeeeccccc
Confidence 48899999999999999999999999998999999999999999999 99999999999999999988889999999998
Q ss_pred CC-CCcchHHHHHHHhhhc-cCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCCCCceecccccCC-CCCccccCCC
Q 010461 120 SP-KPDNFLAYVGELAKLF-SGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSD-PLGGFIQSSH 196 (510)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~TLeT~g~~~~~~-~l~~~~~tAH 196 (510)
.+ .|+.+...|......+ .+...+|+||.++.+.|+++|+|.+|+- ..++||++||+|+..++|.+ -+.-..++||
T Consensus 115 ~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~-~~~ki~~~tl~t~~~~~~~k~~v~~~~~gah 193 (582)
T KOG1285|consen 115 VAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETP-HAVKIDPGTLETTYKVRFTKTLVQEHTAGAH 193 (582)
T ss_pred cCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCc-eeEEecCcccceeEeeccccceeeeeecccC
Confidence 76 4443332221112222 2456789999999999558999999987 48999999999999999998 4555678899
Q ss_pred CccCCC-Ccee-cccC-CC---CCcEEEEEEcCCCCc------ee-EEE--EEecCCCCCCccceeeeecCcEEEEecCC
Q 010461 197 PIVTDD-EFLT-LLPD-LL---NPGYLVVRMEPGTNE------RK-VIG--RVNCRGGPAPGWVHSFTMTEHYVVVPEMP 261 (510)
Q Consensus 197 Pk~dp~-e~~~-~~~~-~~---~~~~~v~~~~~~~~~------~~-~~~--~~~~~~~~~~~~iHDf~vTeny~V~~~~P 261 (510)
|+.|+. ++++ ++.. +. ...|.+.+....... .+ +-+ .+.+++.+.|.|+|+|++||||+|+++.|
T Consensus 194 ~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~ 273 (582)
T KOG1285|consen 194 PHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFP 273 (582)
T ss_pred CcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCC
Confidence 999999 7777 4433 22 124556555433211 11 111 24577889999999999999999999999
Q ss_pred ccccHHHHhccC------CCccceeeecCCCCeEEEEEeCCCCceeEEEEcCCceeEeeeceeeccCCCCceEEEEeccc
Q 010461 262 LQYSVQSLLKAE------PSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCC 335 (510)
Q Consensus 262 ~~~~~~~~~~g~------~~~~~~~~w~~~~~t~~~VIpR~~~~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~iv~D~~ 335 (510)
+++++.+++... ...+++++|.|.....++++++++++.+..-..+.+++||++||||++. .||+|.|
T Consensus 274 ~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg------~vi~D~~ 347 (582)
T KOG1285|consen 274 LRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDG------CVVPDLC 347 (582)
T ss_pred cccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccC------ceEEEEE
Confidence 999999887642 3356788999999999999999877654334445589999999999874 7999999
Q ss_pred ccCCchhHHhhhh---hccccc-CCCCCCCCCcceEEEEEecCCCCCcc-------------------------------
Q 010461 336 EHNADTTIIETLS---LKNLRS-FHGQDVLPDARVGRFTIPFDGSQFGK------------------------------- 380 (510)
Q Consensus 336 ~~~~~~~~~~~~~---~~~l~~-~~~~~~~~~~~l~R~~idl~~~~~~~------------------------------- 380 (510)
+|....++....+ .++.+. ..+..........|+++.+.......
T Consensus 348 ~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~ 427 (582)
T KOG1285|consen 348 VYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRE 427 (582)
T ss_pred EEechhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcc
Confidence 9983322221111 111110 00111111223345554433221000
Q ss_pred --------e-eeecC-------CC-Cc-CCcccCCccCCCCCCCCcceeEEecccCCCCCCCeEEEEeccCCCeeEEe-c
Q 010461 381 --------L-ETVMD-------PE-EH-GRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWC-E 441 (510)
Q Consensus 381 --------~-~~~l~-------~~-~~-~~~~EfP~in~~~~g~~yry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~-~ 441 (510)
+ +..+. +. .+ ..++|+++||..+.||+|||+|++..+. +..+++++|+|+.+|+...|. +
T Consensus 428 ~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~-~p~~~g~vKvDl~~g~~~~w~~~ 506 (582)
T KOG1285|consen 428 SDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDP-WPKVSGIVKVDLVTGEVKKWREG 506 (582)
T ss_pred cccchhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCC-ccCCCeEEEEEecCCceeeEecC
Confidence 0 00000 00 01 1478999999999999999999998764 556899999999999999997 5
Q ss_pred CCccCCccEEeeCCCCCCCCCcEEEEEEEcC-CCceEEEEEecCCccceEEEEcCCCCCCCcccccccC
Q 010461 442 EGIVPSEPLFVARPGATDEDDGVVISMISEK-NGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPE 509 (510)
Q Consensus 442 ~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~~vAr~~lP~~iP~GfHG~w~~~ 509 (510)
.+++.|||+|||+|++.+|||||||++|++. ..+|+|+||||++++++||+++|.+||+||||+|++.
T Consensus 507 ~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~~ar~~vp~rvP~gfHG~f~~~ 575 (582)
T KOG1285|consen 507 GGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEKSFLLILDAKTLEEVARVEVPTRVPYGFHGTFVST 575 (582)
T ss_pred CCccCCCceEecCCCCcccCCcEEEEEEEcCCCCcccEEEEeccccceeeEEecCCCCCCccceeEecc
Confidence 6667779999999999999999999999996 5889999999999999999999999999999999975
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=9.2e-19 Score=187.19 Aligned_cols=281 Identities=17% Similarity=0.201 Sum_probs=203.8
Q ss_pred cCcCccccceeeeeee-eEEEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCC--eEEEeeeccCcH
Q 010461 25 NHVAWTSVKQERWEGE-LVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNG--RLIAGHRQIETE 101 (510)
Q Consensus 25 ~~~~~~~~~~E~~~~~-l~V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG--~v~y~~R~V~T~ 101 (510)
..++|.|+. |..... +.++|.+|.-++|.+.|+|+++.+.. ..-+|+||||||+|++.|+ .| +++|..||.+|
T Consensus 108 v~~~f~~~~-~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~p-v~g~~~~~gtet~~~~ki~-~~tl~t~~~~~~~k~- 183 (582)
T KOG1285|consen 108 VSGEFAPVA-EFPDPCKNIFSGFFPEFRNGESIRDNANPNFTP-VGGHHLYAGTETPHAVKID-PGTLETTYKVRFTKT- 183 (582)
T ss_pred eeccccccC-CCCCccCcceeeeeeecccccccccCCCcceee-cCCCeeEecCCCceeEEec-CcccceeEeeccccc-
Confidence 345688888 655443 45899999999999999999986531 1125999999999999999 88 89999999999
Q ss_pred HHHHHHHcCC-cccccccCCCCCcchHHHHHHH-h----hhccCCCcCCccceeEEEeCCCeEEEeecCCCceeE---eC
Q 010461 102 AYKAAKKNKK-LCYREFSVSPKPDNFLAYVGEL-A----KLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVI---VD 172 (510)
Q Consensus 102 ~~~~e~~ag~-~~~~~f~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~---lD 172 (510)
|.+|..+|+ ..+...|++-.- ....+++.- + ...........+|+..++.. ++++|+.|.+ .||. ..
T Consensus 184 -~v~~~~~gah~~~d~~G~~~g~-~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~-~~~~a~~~dd-~~~p~yvhs 259 (582)
T KOG1285|consen 184 -LVQEHTAGAHPHPDEIGTVYGH-FGIARFGLFFARALTVLKNPANGVGLANAGLVWFH-NRLLAYSEDD-LPYPGYVHS 259 (582)
T ss_pred -eeeeeecccCCcccCcccEEee-echhhccccccceeEEEecCCCccccccccceEee-cceeeeccCC-CccceEEee
Confidence 999999885 344445543210 001111100 0 00011223456888876664 7999998887 4753 44
Q ss_pred CCCCce-ecccccCCCCCccccCCCCccCCC--CceecccCCC-CCcEEEEEEcCCCCceeEEEEEecCCCCCCccceee
Q 010461 173 PDTLDT-LGKFEYSDPLGGFIQSSHPIVTDD--EFLTLLPDLL-NPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSF 248 (510)
Q Consensus 173 p~TLeT-~g~~~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf 248 (510)
-..+|| ++..++..++.. ...||||+||. +.+...++.. ++.+.+.+++....+...+ .+.+ ..+.|+|||
T Consensus 260 ~G~tenyi~~~e~~~~l~~-~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~-~~~~---~~~t~hh~n 334 (582)
T KOG1285|consen 260 FGDTENYIGRFEFPLRLNL-SKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPV-EIFP---SFPTFHHDN 334 (582)
T ss_pred cCCccceEeEecCCcccch-hhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcc-eecc---CcceEEEee
Confidence 557899 999999998884 78999999998 7777776654 3545556666544332211 2221 278899999
Q ss_pred eecCcEEEEecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCC--CceeEEEEcCCceeEeeeceeeccC
Q 010461 249 TMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKAS--GKIAASVEVPLYMVFHFINAYEEKD 322 (510)
Q Consensus 249 ~vTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~--~~~v~~~~~~~~f~fH~~NayE~~~ 322 (510)
++|||+.|+++.+...++..+..+.. + +..+..+..|+++.++.. ...++|.+.+.+++||+.|+||+..
T Consensus 335 a~eedg~vi~D~~~~~~~~~~~~~~~-p---~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~ 406 (582)
T KOG1285|consen 335 AFEEDGCVVPDLCVYFDLSEMIRDTS-P---LLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKP 406 (582)
T ss_pred eecccCceEEEEEEEechhhhhcccc-e---eecccccccccccccccCCcccceEEEeccccccccchhhhcccC
Confidence 99999999999999999998877665 3 446778889999998864 4578999999999999999999743
No 8
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.19 E-value=31 Score=36.05 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCcceeEEecccCCCCCCCeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecC
Q 010461 405 GKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGS 484 (510)
Q Consensus 405 g~~yry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~ 484 (510)
...-||+|.++.+ ..|.++|+.+++...-...+ .+|.=|. -..|.-||++..+.. ..+.|||++
T Consensus 45 s~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~~G---~~~~~i~----~s~DG~~~~v~n~~~---~~v~v~D~~ 108 (369)
T PF02239_consen 45 SPDGRYLYVANRD------GTVSVIDLATGKVVATIKVG---GNPRGIA----VSPDGKYVYVANYEP---GTVSVIDAE 108 (369)
T ss_dssp TT-SSEEEEEETT------SEEEEEETTSSSEEEEEE-S---SEEEEEE----E--TTTEEEEEEEET---TEEEEEETT
T ss_pred cCCCCEEEEEcCC------CeEEEEECCcccEEEEEecC---CCcceEE----EcCCCCEEEEEecCC---CceeEeccc
Confidence 3346789987642 47999999999865433222 2333332 123666888776644 589999999
Q ss_pred CccceEEEEcC
Q 010461 485 TFEEIARARFP 495 (510)
Q Consensus 485 ~l~~vAr~~lP 495 (510)
+++.|.++...
T Consensus 109 tle~v~~I~~~ 119 (369)
T PF02239_consen 109 TLEPVKTIPTG 119 (369)
T ss_dssp T--EEEEEE--
T ss_pred cccceeecccc
Confidence 99988877654
No 9
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=17 Score=34.81 Aligned_cols=37 Identities=38% Similarity=0.549 Sum_probs=29.6
Q ss_pred eEEEeCCCeEEEe-ecCCCceeEeCCCCCceecccccCCC
Q 010461 149 GIYKLGDGRIICL-TETQKGSVIVDPDTLDTLGKFEYSDP 187 (510)
Q Consensus 149 ~v~~~~~grllAl-~E~g~~p~~lDp~TLeT~g~~~~~~~ 187 (510)
.+..++ +.+++| |-.| -.+..|++||+++|.+.|.|+
T Consensus 95 Git~~g-d~~y~LTw~eg-vaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLG-DYFYQLTWKEG-VAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred ceeecc-ceEEEEEeccc-eeEEEChHHhhhhcccccCCc
Confidence 566777 688877 4445 489999999999999999875
No 10
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=37.06 E-value=99 Score=20.41 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=20.4
Q ss_pred ceEEEEEecCCccceEEEEcCCCCCCCc
Q 010461 475 GAYVVLLDGSTFEEIARARFPFGLPYGF 502 (510)
Q Consensus 475 ~S~L~VlDA~~l~~vAr~~lP~~iP~Gf 502 (510)
...+.|||+.+.+.+.++.+. .-|.++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVG-GYPFGV 39 (42)
T ss_pred CCEEEEEECCCCeEEEEEECC-CCCceE
Confidence 457888999988889998884 555543
No 11
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.25 E-value=5.1e+02 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCcEEEEEEEcC------CCceEEEEEecCCccceEEEEcCCC
Q 010461 461 DDGVVISMISEK------NGGAYVVLLDGSTFEEIARARFPFG 497 (510)
Q Consensus 461 DDG~Ll~~v~d~------~~~S~L~VlDA~~l~~vAr~~lP~~ 497 (510)
..|.|.++.+.. ...+|++|+|.++=+.|+|+.|++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~ 290 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP 290 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc
Confidence 446666666542 1469999999999889999999754
No 12
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.51 E-value=54 Score=22.01 Aligned_cols=28 Identities=21% Similarity=0.136 Sum_probs=17.7
Q ss_pred cceeEEEeCCCeEEEeecCCCceeEeCCCC
Q 010461 146 ANNGIYKLGDGRIICLTETQKGSVIVDPDT 175 (510)
Q Consensus 146 aNt~v~~~~~grllAl~E~g~~p~~lDp~T 175 (510)
.+.+++..+ |++++..+.| .-|.||++|
T Consensus 13 ~~~~~~v~~-g~vyv~~~dg-~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVAG-GRVYVGTGDG-NLYALDAAT 40 (40)
T ss_dssp --S--EECT-SEEEEE-TTS-EEEEEETT-
T ss_pred cCcCCEEEC-CEEEEEcCCC-EEEEEeCCC
Confidence 344555554 8999999887 589999876
No 13
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=26.40 E-value=4.2e+02 Score=25.21 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=40.2
Q ss_pred CeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcCCCCCCC
Q 010461 424 NSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYG 501 (510)
Q Consensus 424 ~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP~~iP~G 501 (510)
+.|..+|+++++.......+..+....|-| |..+|++.. . ....|.|+|.++.+.+.++.+. .=|++
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~g~~l~~~~--~-~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-------DEKYLLTTN--G-VSNDVSVIDVAALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CeEEEEECCCCcEEEEEEeCCCcceEEECC-------CCCEEEEEc--C-CCCeEEEEECCCCcEEEEEEcc-cccce
Confidence 578888999888654432222222333443 223444332 1 2347999999999889999875 33443
No 14
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.50 E-value=1.1e+02 Score=31.94 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=43.6
Q ss_pred cCCccCCCCCCCCcceeEEecccCCCCCCCeEEEEeccCCCeeEEe--cCCccCCccEEeeCCCCCCCCCcEEEEEEEcC
Q 010461 395 DMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWC--EEGIVPSEPLFVARPGATDEDDGVVISMISEK 472 (510)
Q Consensus 395 EfP~in~~~~g~~yry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~--~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~ 472 (510)
-|-+.+|+ -+|+|......+. .+.|.-+|.++.+...-. .++.-+-.+-|-+ |.-++..-+++.
T Consensus 272 lFi~thP~-----s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-------dG~~v~vS~~~~ 337 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-------DGKEVWVSVWDG 337 (369)
T ss_dssp --EE--TT------SEEEEE-TT-SS--HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-------TSSEEEEEEE--
T ss_pred ceeecCCC-----CccEEeeccCCCC--CceEEEEECcCcceeEEEeccCCCcEeccEECC-------CCCEEEEEEecC
Confidence 45555554 4688886322221 468999999998654322 2221111223332 333444445554
Q ss_pred CCceEEEEEecCCccceEEEEcC
Q 010461 473 NGGAYVVLLDGSTFEEIARARFP 495 (510)
Q Consensus 473 ~~~S~L~VlDA~~l~~vAr~~lP 495 (510)
++ .|+|+|++++++++|+.++
T Consensus 338 ~~--~i~v~D~~Tl~~~~~i~~~ 358 (369)
T PF02239_consen 338 NG--AIVVYDAKTLKEKKRIPVP 358 (369)
T ss_dssp TT--EEEEEETTTTEEEEEEE--
T ss_pred CC--EEEEEECCCcEEEEEEEee
Confidence 33 9999999999999999955
No 15
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.84 E-value=2e+02 Score=31.30 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=41.4
Q ss_pred eEEecccCCCCCCCeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccc
Q 010461 411 AYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEE 488 (510)
Q Consensus 411 ~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~ 488 (510)
+|+.-.-.+....+.|+++|..+|+...-++-+.+++-.+. ++ +|+.+.++.. +....=.||.||+.+|+.
T Consensus 362 ~f~Lkv~d~~~~ls~LvllD~~tg~~l~~S~~~~Ir~r~~~-~~-----~~~~vaI~g~-~G~~~ikLvlid~~tLev 432 (489)
T PF05262_consen 362 VFGLKVLDPNHYLSELVLLDSDTGDTLKRSPVNGIRGRTFY-ER-----EDDLVAIAGC-SGNAAIKLVLIDPETLEV 432 (489)
T ss_pred eeEEEEecCCCcceeEEEEeCCCCceecccccceeccceeE-Ec-----CCCEEEEecc-CCchheEEEecCccccee
Confidence 45333333445678999999999987655555556665543 33 2333333333 223333466669999874
Done!