Query 010461
Match_columns 510
No_of_seqs 125 out of 1099
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 07:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010461.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010461hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 49.8 1.8 0.00013 29.9 0.3 35 475-509 7-41 (61)
2 d1jmxb_ b.69.2.2 (B:) Quinohem 28.1 47 0.0034 28.4 6.6 62 424-496 272-333 (346)
3 d1l0qa2 b.69.2.3 (A:1-301) Sur 27.4 86 0.0063 25.9 8.2 72 409-495 2-73 (301)
4 d1pbyb_ b.69.2.2 (B:) Quinohem 26.0 65 0.0047 27.2 7.1 63 424-497 260-322 (337)
5 d1pbyb_ b.69.2.2 (B:) Quinohem 17.1 2.5E+02 0.018 23.0 9.2 62 424-495 11-75 (337)
6 d1l0qa2 b.69.2.3 (A:1-301) Sur 16.6 1.3E+02 0.0097 24.5 7.0 68 424-502 224-291 (301)
7 d2madh_ b.69.2.1 (H:) Methylam 16.0 2.1E+02 0.016 24.3 8.6 70 423-501 297-366 (373)
8 d1qksa2 b.70.2.1 (A:136-567) C 12.3 93 0.0068 28.6 4.9 34 462-495 378-413 (432)
9 d2bnga1 d.17.4.8 (A:13-144) Un 11.0 1.1E+02 0.0077 22.9 4.0 28 79-107 94-121 (132)
10 d1qksa2 b.70.2.1 (A:136-567) C 10.2 4.6E+02 0.034 23.2 9.4 75 409-495 74-150 (432)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=49.84 E-value=1.8 Score=29.93 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=30.7
Q ss_pred ceEEEEEecCCccceEEEEcCCCCCCCcccccccC
Q 010461 475 GAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPE 509 (510)
Q Consensus 475 ~S~L~VlDA~~l~~vAr~~lP~~iP~GfHG~w~~~ 509 (510)
..+|+|||..++.+-|...-|...+-|++..|+++
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG 41 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEHPTERAAGIHSVYVNG 41 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETT
T ss_pred CCCEEEECHHHccCcccccccccccceeEEEEECC
Confidence 46899999999988888888999999999999875
No 2
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=28.09 E-value=47 Score=28.35 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=39.0
Q ss_pred CeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcCC
Q 010461 424 NSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPF 496 (510)
Q Consensus 424 ~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP~ 496 (510)
+.|..+|+.+++...-...+..+.-..|-| |.-+|.+. .. + ..+.|+|+++++.|+++++|-
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-------DG~~l~v~--~~-d-~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDK-------KGDKLYLG--GT-F-NDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECS-------SSSCEEEE--SB-S-SEEEEEETTTTEEEEEEECSS
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEEcC-------CCCEEEEE--eC-C-CcEEEEECccCCEEEEEECCC
Confidence 567888988887654433222222333433 33344432 22 2 479999999999999999983
No 3
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=27.41 E-value=86 Score=25.88 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred ceeEEecccCCCCCCCeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccc
Q 010461 409 RYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEE 488 (510)
Q Consensus 409 ry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~ 488 (510)
.|+|.++.. -+.|..+|+++++...-.+-+ ..|.=|. -..|..+|++... ....+.|+|.++.+.
T Consensus 2 ~~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~g---~~p~~va----~spdG~~l~v~~~---~~~~i~v~d~~t~~~ 66 (301)
T d1l0qa2 2 TFAYIANSE-----SDNISVIDVTSNKVTATIPVG---SNPMGAV----ISPDGTKVYVANA---HSNDVSIIDTATNNV 66 (301)
T ss_dssp EEEEEEETT-----TTEEEEEETTTTEEEEEEECS---SSEEEEE----ECTTSSEEEEEEG---GGTEEEEEETTTTEE
T ss_pred eEEEEEECC-----CCEEEEEECCCCeEEEEEECC---CCceEEE----EeCCCCEEEEEEC---CCCEEEEEECCCCce
Confidence 477866543 257999999999865432211 2332111 1224457654322 224689999998888
Q ss_pred eEEEEcC
Q 010461 489 IARARFP 495 (510)
Q Consensus 489 vAr~~lP 495 (510)
++++...
T Consensus 67 ~~~~~~~ 73 (301)
T d1l0qa2 67 IATVPAG 73 (301)
T ss_dssp EEEEECS
T ss_pred eeeeecc
Confidence 8887665
No 4
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=25.97 E-value=65 Score=27.19 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=38.1
Q ss_pred CeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcCCC
Q 010461 424 NSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFG 497 (510)
Q Consensus 424 ~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP~~ 497 (510)
+.|..+|+++++...-...+..+....|-| |..+|.+- .. .+.|.|+|+++++.|+++.+|..
T Consensus 260 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-------dG~~l~v~--~~--~~~i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVPLPHSYYSVNVST-------DGSTVWLG--GA--LGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECT-------TSCEEEEE--SB--SSEEEEEETTTCCEEEEEECGGG
T ss_pred ccEEEEECCCCcEEEEEcCCCCEEEEEECC-------CCCEEEEE--eC--CCcEEEEECCCCcEEEEEECCCC
Confidence 467788999888654432221111222322 33344432 22 24599999999999999999854
No 5
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=17.09 E-value=2.5e+02 Score=22.97 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=40.1
Q ss_pred CeEEEEeccCCCeeEEe--c-CCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcC
Q 010461 424 NSLTKLDLVKQKAKNWC--E-EGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFP 495 (510)
Q Consensus 424 ~~lvk~D~~tg~~~~w~--~-~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP 495 (510)
+.|..+|+++++...-. + .+..+....|-| |.-+|++. .. ....|.|+|.++.+.+.++.++
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-------Dg~~l~v~--~~-~~~~v~v~D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-------GGRIAYAT--VN-KSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-------TSSEEEEE--ET-TTTEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECC-------CCCEEEEE--EC-CCCeEEEEECCCCcEEEEEecC
Confidence 68999999999865432 2 334445555554 32355443 22 2246999999998888888876
No 6
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=16.58 E-value=1.3e+02 Score=24.55 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcCCCCCCCc
Q 010461 424 NSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGF 502 (510)
Q Consensus 424 ~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP~~iP~Gf 502 (510)
+.|..+|+.+++...-.+.+ .+|.-|. -..|..+|++... ....+.|+|.++.+.++++.+.. -|+++
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~---~~~~~va----~spdg~~l~va~~---~~~~i~v~D~~t~~~~~~~~vg~-~P~~~ 291 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVG---PDPAGIA----VTPDGKKVYVALS---FCNTVSVIDTATNTITATMAVGK-NPYAS 291 (301)
T ss_dssp CEEEEEETTTTEEEEEEECC---SSEEEEE----ECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS-SEECC
T ss_pred eeeeeeecCCCeEEEEEcCC---CCEEEEE----EeCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEeCCC-CCcEe
Confidence 57888899998764433222 2333221 1224346654432 22479999999998899887643 36665
No 7
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}
Probab=15.95 E-value=2.1e+02 Score=24.31 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=42.9
Q ss_pred CCeEEEEeccCCCeeEEecCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCccceEEEEcCCCCCCC
Q 010461 423 PNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYG 501 (510)
Q Consensus 423 ~~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l~~vAr~~lP~~iP~G 501 (510)
.+.+..+|..+++...-...+..+....|-| |.-++|.+... ....+.|+|+++-+++.++..+.+-|.+
T Consensus 297 ~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-------DG~~~l~vt~~--~d~~v~v~D~~tg~~~~~~~~~g~~P~~ 366 (373)
T d2madh_ 297 AKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-------DGGPDLYALSA--GTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred CCeEEEEECCCCcEEEEecCCCCeeEEEECC-------CCCEEEEEEeC--CCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence 3678888999988654433333333334433 22344433322 2246899999999999998876666643
No 8
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=12.27 E-value=93 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=25.6
Q ss_pred Cc-EEEEEEEc-CCCceEEEEEecCCccceEEEEcC
Q 010461 462 DG-VVISMISE-KNGGAYVVLLDGSTFEEIARARFP 495 (510)
Q Consensus 462 DG-~Ll~~v~d-~~~~S~L~VlDA~~l~~vAr~~lP 495 (510)
|| +|+.-++. ....+.++|+|++++++++++.-|
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 45 66555554 356688999999999999988775
No 9
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.98 E-value=1.1e+02 Score=22.91 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=23.3
Q ss_pred cEEEEEEeeCCeEEEeeeccCcHHHHHHH
Q 010461 79 MLVKVHFEKNGRLIAGHRQIETEAYKAAK 107 (510)
Q Consensus 79 mv~~~~f~~dG~v~y~~R~V~T~~~~~e~ 107 (510)
.++-|+|+ |||+.+..-|..+..+.+.-
T Consensus 94 ~~~~~~v~-dGkI~~~~~y~D~~~~~~~l 121 (132)
T d2bnga1 94 VCGVFEVD-DGRITLWRDYFDVYDMFKGL 121 (132)
T ss_dssp EEEEEEEE-TTEEEEEEEECCHHHHHHHH
T ss_pred EEEEEEEc-CCEEEEEEEEeCHHHHHHHH
Confidence 46778999 99999999999998887654
No 10
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=10.15 E-value=4.6e+02 Score=23.25 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=44.2
Q ss_pred ceeEEecccCCCCCCCeEEEEeccCCCeeEEe--cCCccCCccEEeeCCCCCCCCCcEEEEEEEcCCCceEEEEEecCCc
Q 010461 409 RYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWC--EEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTF 486 (510)
Q Consensus 409 ry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~--~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~~~~S~L~VlDA~~l 486 (510)
||+|.++.. +.+..+|+.+++.+.-. ..+..+...++-|. -..|.-+|++...+. ..+.|+|+++.
T Consensus 74 ~~l~~~s~d------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~---~SpDG~~l~vs~~~~---~~v~i~d~~t~ 141 (432)
T d1qksa2 74 RYLFVIGRD------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM---EGWEDKYAIAGAYWP---PQYVIMDGETL 141 (432)
T ss_dssp CEEEEEETT------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCS---TTCTTTEEEEEEEET---TEEEEEETTTC
T ss_pred CEEEEEcCC------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecc---cCCCCCEEEEEcCCC---CeEEEEeCccc
Confidence 677766432 47888999988754332 22222222333332 223445777655432 46889999988
Q ss_pred cceEEEEcC
Q 010461 487 EEIARARFP 495 (510)
Q Consensus 487 ~~vAr~~lP 495 (510)
+.++.+...
T Consensus 142 ~~~~~~~~~ 150 (432)
T d1qksa2 142 EPKKIQSTR 150 (432)
T ss_dssp CEEEEEECC
T ss_pred cceeeeccC
Confidence 877776654
Done!