BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010462
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 30/170 (17%)
Query: 93 RGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEIL---PQLFDKLTCLRALKLEVREQG 149
R ASVP I N + L Y N+I P +FD L + ++E
Sbjct: 30 RHASVPAGIPTNAQIL------------YLHDNQITKLEPGVFDSL-------INLKELY 70
Query: 150 LYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCKNLRELP 207
L +N + +P + + L L L L G ++ LP + + L +L+ L + C L ELP
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELP 128
Query: 208 RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV-RKFVVGGGYDRAC 256
RGI +L L +L + + L+ +P G + RL S+ ++ G +D C
Sbjct: 129 RGIERLTHLTHLALD-QNQLKSIPHGAFD--RLSSLTHAYLFGNPWDCEC 175
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 106 KGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK 164
+GL L+SL +E W+ LP L L++LK+ + + + I
Sbjct: 180 QGLVNLQSLRLE-----WTGIRSLPASIANLQNLKSLKIR-------NSPLSALGPAIHH 227
Query: 165 LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224
L L+ L L G + P L+RL + C NL LP I +L +L L G
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 225 DSLRYLPAGIGEL 237
+L LP+ I +L
Sbjct: 288 VNLSRLPSLIAQL 300
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 151 YTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRG 209
Y+ +PT I YL L ++ LP EL +L +L + K L+ LP G
Sbjct: 15 YSQGRTSVPTGIPA--QTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNG 70
Query: 210 I-GKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268
+ KL L YL N T+ L+ LP G+ + +L +++ + ++ G KL L+
Sbjct: 71 VFNKLTSLTYL-NLSTNQLQSLPNGVFD--KLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 269 DCRI 272
D R+
Sbjct: 128 DLRL 131
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 24 ILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLTVEIH 69
L+ S + FY GY G+ YK + +V + LCS + ++H
Sbjct: 183 FLSIASAYYMFYDGYDGDTYKSRYGTVVTNDMGTLCSRIVTSEQLH 228
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 24 ILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLTVEIH 69
L+ S + FY GY G+ YK + +V + LCS + ++H
Sbjct: 183 FLSIASAYYMFYDGYDGDTYKSRYGTVVTNDMGTLCSRIVTSEQLH 228
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQ-LFDKLTCLRA 140
TK+ +L L + S+P ++D + L+ LR Y+ + +P+ FDKLT L+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-------YNNQLKRVPEGAFDKLTELKT 185
Query: 141 LKLEVREQGLYTNFIKKIPTN-IEKLLHLKYLSL 173
LKL+ N +K++P + L LK L L
Sbjct: 186 LKLD-------NNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|3EJW|A Chain A, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
pdb|3EJW|B Chain B, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
Length = 315
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 373 CEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLT 425
+H+ G + E LEI G+ +V+ N+ G + + DG+ +I P+ T
Sbjct: 254 ADHVLKNGPMKVGEKLEIPGVGTVEVSANKVQGYDYEADGNGIILLPERTVFT 306
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 120 EYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIPTNIEKLLHLKYLSLFGQKK 178
+++ + +P L+ LR LKL + N ++ +IP + + L+ L L
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKL-------WLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 179 IEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236
++P L NL +++ + + E+P+ IG+L L L +PA +G+
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,513,586
Number of Sequences: 62578
Number of extensions: 597909
Number of successful extensions: 1082
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 18
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)