Query 010462
Match_columns 510
No_of_seqs 384 out of 3473
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 00:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-33 2.9E-38 292.5 11.1 207 1-224 438-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-31 3.1E-36 292.2 19.8 416 21-489 471-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.7E-29 3.7E-34 275.9 17.0 362 82-485 69-464 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.6E-34 276.1 14.9 379 82-485 140-559 (968)
5 KOG0444 Cytoskeletal regulator 99.9 2.8E-28 6E-33 230.6 -4.8 342 82-488 32-377 (1255)
6 KOG4194 Membrane glycoprotein 99.9 5.2E-26 1.1E-30 213.6 9.9 340 109-485 78-428 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.1E-26 2.5E-31 218.0 5.4 341 82-482 102-448 (873)
8 KOG0444 Cytoskeletal regulator 99.9 2.8E-27 6E-32 223.8 -3.4 340 82-485 7-351 (1255)
9 PLN03210 Resistant to P. syrin 99.9 3.5E-23 7.5E-28 226.7 16.8 302 110-466 590-910 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 5.1E-26 1.1E-30 204.5 -4.8 263 82-394 45-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 7.6E-24 1.7E-28 190.6 -7.6 249 107-401 43-292 (565)
12 KOG0618 Serine/threonine phosp 99.8 9.5E-22 2E-26 194.7 -3.5 349 82-485 45-488 (1081)
13 KOG0618 Serine/threonine phosp 99.7 6.7E-20 1.5E-24 181.7 -1.9 357 84-484 23-418 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 2.6E-16 5.7E-21 160.8 12.1 113 110-250 202-314 (788)
15 KOG4237 Extracellular matrix p 99.6 4E-17 8.6E-22 147.4 0.1 302 87-461 51-358 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.6E-15 5.7E-20 153.6 12.0 260 84-466 203-462 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 153.3 11.6 94 137-248 200-293 (754)
18 KOG0617 Ras suppressor protein 99.6 3.5E-17 7.7E-22 130.8 -3.2 150 82-248 33-183 (264)
19 KOG0617 Ras suppressor protein 99.6 3.7E-17 8.1E-22 130.7 -4.1 151 107-274 31-182 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.6 1.9E-15 4.2E-20 157.9 6.5 326 107-483 521-856 (889)
21 PRK15370 E3 ubiquitin-protein 99.6 7.3E-15 1.6E-19 151.3 8.6 97 136-250 178-274 (754)
22 KOG4237 Extracellular matrix p 99.5 5E-16 1.1E-20 140.4 -2.0 280 78-394 63-357 (498)
23 cd00116 LRR_RI Leucine-rich re 99.5 4.3E-15 9.3E-20 141.9 -0.3 111 107-224 21-147 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 4.1E-14 8.9E-19 135.2 0.4 244 129-394 16-289 (319)
25 KOG0532 Leucine-rich repeat (L 99.1 1.7E-12 3.7E-17 123.2 -3.5 195 87-308 55-249 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 97.7 5.4 126 107-248 17-150 (175)
27 KOG4341 F-box protein containi 99.0 1.8E-11 4E-16 112.1 -1.7 305 167-508 139-455 (483)
28 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8.1E-15 94.9 4.6 123 82-222 19-148 (175)
29 KOG1909 Ran GTPase-activating 99.0 1.6E-10 3.5E-15 103.7 1.2 88 107-201 28-131 (382)
30 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.8E-14 107.3 6.0 123 113-249 97-220 (394)
31 KOG3207 Beta-tubulin folding c 98.9 1E-09 2.2E-14 101.4 3.2 158 82-251 121-284 (505)
32 KOG3207 Beta-tubulin folding c 98.9 5.7E-10 1.2E-14 103.1 1.4 120 329-461 217-338 (505)
33 KOG4341 F-box protein containi 98.8 1.9E-10 4.2E-15 105.5 -2.4 269 190-491 138-419 (483)
34 KOG1909 Ran GTPase-activating 98.7 2E-09 4.4E-14 96.8 0.5 87 130-224 24-130 (382)
35 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.4E-14 104.5 -1.5 195 135-371 74-271 (722)
36 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 100.7 4.7 174 107-304 114-288 (394)
37 KOG1259 Nischarin, modulator o 98.7 2E-09 4.4E-14 94.7 -0.6 129 107-251 282-412 (490)
38 KOG1259 Nischarin, modulator o 98.6 5.4E-09 1.2E-13 92.0 0.4 129 132-274 280-408 (490)
39 PLN03150 hypothetical protein; 98.6 6.5E-08 1.4E-12 99.8 8.1 103 137-246 419-523 (623)
40 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.8E-12 65.2 4.6 57 137-201 2-60 (61)
41 PLN03150 hypothetical protein; 98.5 1.2E-07 2.7E-12 97.8 6.3 85 167-251 419-503 (623)
42 KOG2120 SCF ubiquitin ligase, 98.5 1.1E-08 2.4E-13 90.0 -2.1 57 191-248 186-244 (419)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.5E-09 5.4E-14 94.0 -6.2 162 214-396 185-351 (419)
44 PF13855 LRR_8: Leucine rich r 98.4 3.7E-07 8E-12 62.9 4.0 58 110-177 2-60 (61)
45 KOG0531 Protein phosphatase 1, 98.3 5.8E-08 1.3E-12 95.7 -2.1 129 107-251 70-199 (414)
46 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 91.9 -1.0 125 82-225 72-197 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-06 3.5E-11 75.7 3.7 93 288-394 209-314 (388)
48 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.6E-11 53.6 3.2 34 167-201 2-35 (44)
49 PF12799 LRR_4: Leucine Rich r 98.1 4.5E-06 9.7E-11 52.5 3.3 41 136-184 1-41 (44)
50 KOG2982 Uncharacterized conser 98.0 3.9E-06 8.4E-11 74.4 2.9 62 328-391 218-287 (418)
51 KOG3665 ZYG-1-like serine/thre 98.0 5E-06 1.1E-10 85.8 4.2 130 82-226 122-262 (699)
52 KOG4579 Leucine-rich repeat (L 98.0 1.8E-06 3.9E-11 67.4 0.4 84 132-224 49-133 (177)
53 PRK15386 type III secretion pr 97.9 2.5E-05 5.3E-10 74.4 7.2 66 132-209 48-113 (426)
54 KOG4579 Leucine-rich repeat (L 97.9 2.8E-06 6.1E-11 66.4 0.5 92 107-210 51-142 (177)
55 KOG1859 Leucine-rich repeat pr 97.9 5.3E-07 1.1E-11 89.1 -4.7 83 161-249 182-265 (1096)
56 KOG3665 ZYG-1-like serine/thre 97.8 7.7E-06 1.7E-10 84.5 2.1 135 166-304 122-261 (699)
57 KOG2982 Uncharacterized conser 97.8 5.3E-06 1.1E-10 73.5 -0.3 184 107-301 69-287 (418)
58 KOG1859 Leucine-rich repeat pr 97.7 9.8E-07 2.1E-11 87.2 -5.4 125 82-225 164-290 (1096)
59 PRK15386 type III secretion pr 97.7 3.6E-05 7.9E-10 73.2 4.8 84 106-211 49-135 (426)
60 COG5238 RNA1 Ran GTPase-activa 97.6 0.0001 2.2E-09 64.8 4.8 86 132-225 26-131 (388)
61 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 61.2 4.2 83 132-223 60-149 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00011 2.4E-09 61.7 3.2 48 152-201 51-99 (233)
63 KOG1947 Leucine rich repeat pr 97.3 4.8E-05 1E-09 77.2 -0.3 44 448-491 400-445 (482)
64 KOG2123 Uncharacterized conser 97.1 6.1E-05 1.3E-09 66.3 -1.6 100 107-220 17-123 (388)
65 KOG1947 Leucine rich repeat pr 96.9 0.0001 2.2E-09 74.8 -2.2 112 189-304 187-306 (482)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00043 9.4E-09 60.8 0.8 83 132-224 39-126 (260)
67 KOG2123 Uncharacterized conser 96.6 0.00022 4.8E-09 63.0 -2.4 100 134-244 17-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0012 2.5E-08 58.1 0.7 88 158-249 35-127 (260)
69 PF00560 LRR_1: Leucine Rich R 96.0 0.0029 6.4E-08 32.9 1.0 17 168-185 2-18 (22)
70 PF13306 LRR_5: Leucine rich r 95.9 0.027 5.8E-07 45.3 6.4 102 105-223 8-112 (129)
71 KOG3864 Uncharacterized conser 95.4 0.0018 4E-08 54.6 -2.1 64 417-484 123-187 (221)
72 KOG3864 Uncharacterized conser 95.4 0.0016 3.4E-08 55.1 -2.5 86 336-434 103-191 (221)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.013 2.7E-07 30.5 1.5 22 137-165 1-22 (22)
74 KOG0473 Leucine-rich repeat pr 95.0 0.0013 2.8E-08 56.7 -4.0 71 152-224 51-121 (326)
75 KOG0473 Leucine-rich repeat pr 94.7 0.001 2.2E-08 57.2 -5.4 86 107-204 40-125 (326)
76 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.4E-07 26.5 1.3 10 168-177 3-12 (17)
77 PF13306 LRR_5: Leucine rich r 92.6 0.34 7.5E-06 38.7 6.0 95 105-216 31-128 (129)
78 smart00369 LRR_TYP Leucine-ric 89.4 0.29 6.3E-06 26.4 1.8 17 191-208 3-19 (26)
79 smart00370 LRR Leucine-rich re 89.4 0.29 6.3E-06 26.4 1.8 17 191-208 3-19 (26)
80 smart00369 LRR_TYP Leucine-ric 89.4 0.33 7.2E-06 26.2 1.9 21 165-186 1-21 (26)
81 smart00370 LRR Leucine-rich re 89.4 0.33 7.2E-06 26.2 1.9 21 165-186 1-21 (26)
82 smart00367 LRR_CC Leucine-rich 88.8 0.22 4.8E-06 27.0 1.0 19 472-490 1-19 (26)
83 KOG4308 LRR-containing protein 87.2 0.029 6.3E-07 55.9 -5.6 81 138-226 89-184 (478)
84 KOG4308 LRR-containing protein 84.4 0.02 4.3E-07 57.0 -8.3 107 111-225 89-215 (478)
85 smart00364 LRR_BAC Leucine-ric 72.4 2.4 5.2E-05 22.9 1.1 17 167-184 3-19 (26)
86 PF13516 LRR_6: Leucine Rich r 70.6 1.1 2.4E-05 23.5 -0.4 11 167-177 3-13 (24)
87 smart00365 LRR_SD22 Leucine-ri 58.9 7.7 0.00017 21.0 1.5 11 191-201 3-13 (26)
88 smart00368 LRR_RI Leucine rich 50.4 11 0.00025 20.6 1.4 11 167-177 3-13 (28)
89 PF14162 YozD: YozD-like prote 46.2 24 0.00052 22.4 2.4 21 14-34 10-30 (57)
90 KOG3763 mRNA export factor TAP 46.2 8.8 0.00019 38.4 0.8 86 331-425 215-307 (585)
91 KOG3763 mRNA export factor TAP 45.3 17 0.00036 36.5 2.5 80 133-220 215-307 (585)
92 PF13463 HTH_27: Winged helix 24.7 1.2E+02 0.0025 20.5 3.5 29 19-47 36-64 (68)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-33 Score=292.48 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=175.7
Q ss_pred CCCCCcCCC-CCCCHHHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhc-----CCeEEeecc-Cccc
Q 010462 1 MAQDYLSEK-GPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS-----NGCLTVEIH-SGEQ 73 (510)
Q Consensus 1 iaeg~i~~~-~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~-----~e~~~~~~~-~~~~ 73 (510)
||||||.+. ++.+++|.|+.|+++||++||++..... ++..+|+|||+|||+|.|+|+ .+.++...+ +...
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~ 515 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE 515 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence 799999994 5688999999999999999999987654 677889999999999999999 566555543 4444
Q ss_pred ccccCCCCCceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccc
Q 010462 74 STISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTN 153 (510)
Q Consensus 74 ~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 153 (510)
.+....| ..+|+++++++.....+... .+++|++|.+..|.. +...+...+|..++.|++|||+ +|
T Consensus 516 ~~~~~~~-~~~rr~s~~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs-------~~ 581 (889)
T KOG4658|consen 516 IPQVKSW-NSVRRMSLMNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLS-------GN 581 (889)
T ss_pred cccccch-hheeEEEEeccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECC-------CC
Confidence 5555556 88999999999887665555 678999999999862 3455567779999999999999 55
Q ss_pred c-cccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 154 F-IKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 154 ~-~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
. +..+|+.|+++.+||||+++++. +..+|..+++|++|.+|++..+.....+|.....|++|++|.+...
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5 78999999999999999999999 9999999999999999999998877777776777999999998765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=1.4e-31 Score=292.18 Aligned_cols=416 Identities=21% Similarity=0.234 Sum_probs=262.6
Q ss_pred HHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCCe-------EEeeccCcccccccCCCCCceeEEEEEeec
Q 010462 21 YFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGC-------LTVEIHSGEQSTISSFGETKILHLMLTLHR 93 (510)
Q Consensus 21 ~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~ 93 (510)
-++.|+++||++.... .++|||++|+||+++++++. +...............+..+++.+++....
T Consensus 471 ~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 471 GLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 4889999999987432 48999999999999987653 222211111111112222677888776555
Q ss_pred CCCccccccccccCCCCccEEEeccCCcC---ccccchhHhhhcCC-ceeEEEeccccccccccccccccccccccCccc
Q 010462 94 GASVPIPIWDNVKGLRGLRSLLVESGEYS---WSNEILPQLFDKLT-CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLK 169 (510)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~ 169 (510)
...... -..+|.++++|+.|.+..+... .....+|..|..++ .||.|++. ++.+..+|..+ ...+|+
T Consensus 544 ~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-------~~~l~~lP~~f-~~~~L~ 614 (1153)
T PLN03210 544 IDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-------KYPLRCMPSNF-RPENLV 614 (1153)
T ss_pred cceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-------CCCCCCCCCcC-CccCCc
Confidence 443111 1224558999999988765310 11112455565554 58888888 77788888776 467888
Q ss_pred eEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEe
Q 010462 170 YLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 170 ~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 249 (510)
+|++.++. +..+|..+..+++|+.|++++|..+..+|. +..+++|+.|++++|..+..+|..++.+++|+.|++..|.
T Consensus 615 ~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 88888887 778887788888888888888776777775 7778888888888887777888888888888888877665
Q ss_pred CccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCccc-c---cCCCCcchhhHh
Q 010462 250 GGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEER-A---GRRENEEDEDER 325 (510)
Q Consensus 250 ~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~~~~~~~~ 325 (510)
... ..+.. .++++|+.|++.+|..+..+.. ...+|+.|+++.+.....+... . ............
T Consensus 693 ~L~---~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 693 NLE---ILPTG-INLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred CcC---ccCCc-CCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 432 11111 2566677777776654432211 1245666766665422111000 0 000000000000
Q ss_pred h--------hccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccE
Q 010462 326 L--------LEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 326 ~--------~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~ 397 (510)
+ +.....+++|+.|++++|..... +| .++.++++|+.|+|++|..++.+|....+++|+.|+|++|..+.
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LP-SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccc-cC-hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 0 00011235666777766654433 56 56666777777777777666666664466777777777766554
Q ss_pred EecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcE
Q 010462 398 RVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477 (510)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 477 (510)
.++. ..++|+.|++.++. ++ .+|..+..+++|+.|++.+|+.++.+|..+..+++|+.
T Consensus 840 ~~p~---------------~~~nL~~L~Ls~n~-i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 840 TFPD---------------ISTNISDLNLSRTG-IE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred cccc---------------cccccCEeECCCCC-Cc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 4332 23466666665542 32 35666788999999999999999999998888999999
Q ss_pred EEEcCCcchHHH
Q 010462 478 LHIRRCPILEER 489 (510)
Q Consensus 478 L~l~~c~~l~~~ 489 (510)
+++++|+.|++.
T Consensus 898 L~l~~C~~L~~~ 909 (1153)
T PLN03210 898 VDFSDCGALTEA 909 (1153)
T ss_pred eecCCCcccccc
Confidence 999999988754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.7e-29 Score=275.95 Aligned_cols=362 Identities=16% Similarity=0.172 Sum_probs=187.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-cccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp~ 160 (510)
.+++.|++.++.+.... ...+..+++|++|++++|++. ..+.+..+..+++||+|+++ +|.+. .+|.
T Consensus 69 ~~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls-------~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLS-------NNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECc-------CCccccccCc
Confidence 45777777766554311 122336777777777777621 12222334466677777766 44432 2232
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
+.+++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 234455555555554333445445555555555555554334445445555555555555554444444444555555
Q ss_pred cccCcEEEeCccCCccCcccccccccCCCceecCcccCC--------------------ChhhhhHhhccCCCCCCeEEE
Q 010462 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVS--------------------DAGEARRAELEKKKSLLKLGL 300 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~--------------------~~~~~~~~~l~~~~~L~~L~l 300 (510)
+.|++..+... ...+..+..+++|+.|++.++.... ......+..+..+++|+.|++
T Consensus 215 ~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 215 KWIYLGYNNLS---GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred cEEECcCCccC---CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 55544444332 1222333444444444443321100 000112223334455555555
Q ss_pred EecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C
Q 010462 301 HFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L 379 (510)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~ 379 (510)
++|. .....+..+..+++|+.|++++|..... .| .++..+++|+.|++++|.....+|. +
T Consensus 292 s~n~-----------------l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 292 SDNS-----------------LSGEIPELVIQLQNLEILHLFSNNFTGK-IP-VALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred cCCe-----------------eccCCChhHcCCCCCcEEECCCCccCCc-CC-hhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 5443 2233445556667777777777766542 45 5666777777777777766555554 6
Q ss_pred CCCCccceeeccCccccEEecccccCCC------------CCCCCCcccccccccccccccccccccccccccccccccc
Q 010462 380 GKLPSLEYLEIEGMKSVKRVGNEFLGVE------------SDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIII 447 (510)
Q Consensus 380 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 447 (510)
+.+++|+.|++++|.....++..+.... .......+..+++|+.|++.+|. +.+..|..+..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~ 426 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTK 426 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhc
Confidence 6677777777776653223322211100 00000112344555555555443 23445666677
Q ss_pred CcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 448 MPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 448 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
+++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 78888888888766666666666778888888888754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-29 Score=276.12 Aligned_cols=379 Identities=18% Similarity=0.171 Sum_probs=222.9
Q ss_pred CceeEEEEEeecCCC-ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGAS-VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp 159 (510)
..++.|++.++.+.. .+..+. .+++|++|++++|. +....|..+..+++|++|+++ +|.+. .+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~~p 205 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLA-------SNQLVGQIP 205 (968)
T ss_pred CCCCEEECcCCcccccCChHHh----cCCCCCEEECccCc---ccccCChhhhhCcCCCeeecc-------CCCCcCcCC
Confidence 778899998887753 444444 88999999999887 444467778888889999888 66644 567
Q ss_pred ccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
..++++.+|++|++++|...+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 88888888888888888855577888888888888888888755677877888888888888887666667777777777
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCC--------------------hhhhhHhhccCCCCCCeEE
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSD--------------------AGEARRAELEKKKSLLKLG 299 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~--------------------~~~~~~~~l~~~~~L~~L~ 299 (510)
|+.|++..+... ...+..+..+++|+.+++.+...... .....+..+..+++|+.|+
T Consensus 286 L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 286 LISLDLSDNSLS---GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred cCEEECcCCeec---cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 777777666543 22333344555555555543211100 0011122233344444444
Q ss_pred EEecCCCCCCcccccCC-------CCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccC
Q 010462 300 LHFGHSRDGDEERAGRR-------ENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRN 372 (510)
Q Consensus 300 l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 372 (510)
+++|............. ..........+..+..+++|+.|++++|..... +| ..+..+++|+.|++++|..
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~p-~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LP-SEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-CC-hhHhcCCCCCEEECcCCcc
Confidence 44443211000000000 000001112233344455566666665555432 44 4555666666666666654
Q ss_pred CCcCCC-CCCCCccceeeccCccccEEecccccCC-----------CCCCCCCccccccccccccccccccccccccccc
Q 010462 373 CEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGV-----------ESDTDGSSVIAFPKLKHLTFWVMNALEELDFETA 440 (510)
Q Consensus 373 ~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 440 (510)
...++. +..+++|+.|++++|.....++..+... ........+..+++|+.|++++|. +.+.
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~ 514 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK------LSGE 514 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc------ceee
Confidence 444443 4556667777776665333332211000 000000112233334444433332 3345
Q ss_pred cccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 441 IKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 441 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
.|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 666677788888888888877677787788888888888888864
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.8e-28 Score=230.56 Aligned_cols=342 Identities=21% Similarity=0.222 Sum_probs=184.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc--ccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK--KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~lp 159 (510)
..++-|-+.......+|..+. .+.+|.+|.+..|+ ... +...+..++.||.+++. +|.+. .+|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~---L~~-vhGELs~Lp~LRsv~~R-------~N~LKnsGiP 96 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQ---LIS-VHGELSDLPRLRSVIVR-------DNNLKNSGIP 96 (1255)
T ss_pred hheeEEEechhhhhhChHHHH----HHhhhhhhhhhhhh---hHh-hhhhhccchhhHHHhhh-------ccccccCCCC
Confidence 344444454444444555544 55555555555555 222 12224555555555555 44432 345
Q ss_pred ccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
..|.++..|..|+|+.|+ +++.|..+...+++-+|+|++|. ++.+|.. +.+|+.|-+||+++| .+..+|+.+.++.
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS 173 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence 555556666666666665 55566555555566666666555 5555544 335555556666555 4455555555566
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
.|++|.++++... -+-+..++.++.|+.|.+++.+..- ...+..+..+.+|..++++.|.
T Consensus 174 ~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~-------------- 233 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENN-------------- 233 (1255)
T ss_pred hhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccC--------------
Confidence 6666655555443 2233444444445555444422211 1122334445566666666554
Q ss_pred cchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccE
Q 010462 319 EEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~ 397 (510)
...+|+.+..+++|++|+|++|.+++ +. -....-.+|++|+++.| .++.+|. +..+++|+.|++.+|+ +
T Consensus 234 ----Lp~vPecly~l~~LrrLNLS~N~ite--L~-~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L- 303 (1255)
T KOG0444|consen 234 ----LPIVPECLYKLRNLRRLNLSGNKITE--LN-MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-L- 303 (1255)
T ss_pred ----CCcchHHHhhhhhhheeccCcCceee--ee-ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-c-
Confidence 22344555566667777777666665 43 23334456667777666 3444554 6666777777666654 1
Q ss_pred EecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcE
Q 010462 398 RVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477 (510)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 477 (510)
.|.|.. +.++.+.+|+.+...++. | +.+|..++.++.|+.|.++.| .+-.+|..+.-++.|+.
T Consensus 304 ----~FeGiP-----SGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 304 ----TFEGIP-----SGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKV 366 (1255)
T ss_pred ----cccCCc-----cchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcce
Confidence 111111 124455566666655542 2 234555566777777777665 44567777777777777
Q ss_pred EEEcCCcchHH
Q 010462 478 LHIRRCPILEE 488 (510)
Q Consensus 478 L~l~~c~~l~~ 488 (510)
||++.||+|.-
T Consensus 367 LDlreNpnLVM 377 (1255)
T KOG0444|consen 367 LDLRENPNLVM 377 (1255)
T ss_pred eeccCCcCccC
Confidence 77777776543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.2e-26 Score=213.55 Aligned_cols=340 Identities=18% Similarity=0.141 Sum_probs=194.8
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCcccc-chhhh
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+..++|++++|. +.++-+.+|.++++|+.+++. .|.+..+|.......||+.|+|.+|. +..+ .+++.
T Consensus 78 ~~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~-------~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLN-------KNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELS 146 (873)
T ss_pred cceeeeeccccc---cccCcHHHHhcCCcceeeeec-------cchhhhcccccccccceeEEeeeccc-cccccHHHHH
Confidence 556678888887 555566677888888888888 78888888766667778888888887 5554 34577
Q ss_pred cccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++.|+.|||+.|. +.++|.. +..-.++++|+|++|.....-...+..+.+|-+|.+..+.+.. -....+++|++
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~ 222 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPK 222 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc---cCHHHhhhcch
Confidence 77888888888877 6655532 4444677777777775544333456666677777777666653 23344455556
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCC-------CcchhhHhhhccCCCCCCccEE
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRE-------NEEDEDERLLEALGPPPNLKKL 339 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~L~~L 339 (510)
|+.|++.. +.........|.++++|+.|.+..|...-.+..-+.... .........-.++..++.|+.|
T Consensus 223 L~~LdLnr----N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 223 LESLDLNR----NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hhhhhccc----cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 66655543 111112233455555555555555542111000000000 0000222223344445555555
Q ss_pred EEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc
Q 010462 340 RIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF 418 (510)
Q Consensus 340 ~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (510)
++++|.+.. +..+....+++|+.|+|++|...+.-+. +..+..|++|+|+.|. +.++.... +.++
T Consensus 299 ~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~~l 364 (873)
T KOG4194|consen 299 DLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FVGL 364 (873)
T ss_pred ccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HHHh
Confidence 555555444 2223334555555555555533222222 4455555555555544 33332221 2355
Q ss_pred cccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCcc
Q 010462 419 PKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 419 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 485 (510)
.+|++|+++++. + +|.+.+ ....|..+++|++|.+.+| +++.+|. .+..+++|++|++.+|+.
T Consensus 365 ssL~~LdLr~N~-l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 365 SSLHKLDLRSNE-L-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhcCcCCe-E-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 667777666542 2 122222 3445567999999999888 6788886 566788999999988864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-26 Score=217.96 Aligned_cols=341 Identities=18% Similarity=0.196 Sum_probs=221.7
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
++++.+.+..|....+|.... ...+|+.|+|.+|. +..+-...+..++.||.|||+ .|.|..+| .
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~----~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLS-------rN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGH----ESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLS-------RNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccchhhhcccccc----cccceeEEeeeccc---cccccHHHHHhHhhhhhhhhh-------hchhhcccCC
Confidence 344444444444444443333 34445555555555 333334446666667777777 66666665 3
Q ss_pred cccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhh-hccccCceeecCCCcccccc-cccccCc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNEGTDSLRYL-PAGIGEL 237 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~-p~~l~~l 237 (510)
++..-.++++|+|++|. ++.+. ..|..+.+|.+|.|+.|+ ++.+|... .+|++|+.|+|..|. ++.. --.+.++
T Consensus 168 sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL 244 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCc
Confidence 45555667777777777 66653 346666777777777777 66666543 347777777777773 2322 2335667
Q ss_pred ccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCC
Q 010462 238 IRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRE 317 (510)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 317 (510)
.+|+.|.+..+++.......+-.+ .+++.+++.. +.........+-+++.|+.|++++|.
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l---~kme~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~Na------------- 304 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGL---EKMEHLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNA------------- 304 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeee---cccceeeccc----chhhhhhcccccccchhhhhccchhh-------------
Confidence 777777777666654222233222 3333433332 11111222345577889999999986
Q ss_pred CcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccc
Q 010462 318 NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~ 395 (510)
.....++++..+++|+.|+|++|.+.. ++...+..+..|+.|.|+.|. +..+.. +..+.+|++|+|+.|.
T Consensus 305 ----I~rih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 305 ----IQRIHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE- 376 (873)
T ss_pred ----hheeecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe-
Confidence 445567778888999999999999998 876788899999999999994 444443 7789999999999987
Q ss_pred cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCC
Q 010462 396 VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTL 475 (510)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 475 (510)
++....+..+ .+.++|+|++|.+.++. ++.+. ..+|..+++|++|++.+|+....-|..+..+ .|
T Consensus 377 ls~~IEDaa~--------~f~gl~~LrkL~l~gNq-lk~I~-----krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 377 LSWCIEDAAV--------AFNGLPSLRKLRLTGNQ-LKSIP-----KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred EEEEEecchh--------hhccchhhhheeecCce-eeecc-----hhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 5544333221 25579999999998874 66654 3345689999999999997655556666666 88
Q ss_pred cEEEEcC
Q 010462 476 QKLHIRR 482 (510)
Q Consensus 476 ~~L~l~~ 482 (510)
++|.+..
T Consensus 442 k~Lv~nS 448 (873)
T KOG4194|consen 442 KELVMNS 448 (873)
T ss_pred hhhhhcc
Confidence 8888753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.8e-27 Score=223.84 Aligned_cols=340 Identities=18% Similarity=0.225 Sum_probs=273.5
Q ss_pred CceeEEEEEeecCCC--ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 82 TKILHLMLTLHRGAS--VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
+-||-+++.+|.... +|.... .+++++.|.|...+ ... +|..++.+.+|+.|.+. +|.+.++-
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~----qMt~~~WLkLnrt~---L~~-vPeEL~~lqkLEHLs~~-------HN~L~~vh 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVE----QMTQMTWLKLNRTK---LEQ-VPEELSRLQKLEHLSMA-------HNQLISVH 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHH----HhhheeEEEechhh---hhh-ChHHHHHHhhhhhhhhh-------hhhhHhhh
Confidence 557778888887652 555544 89999999998876 555 78889999999999999 99988888
Q ss_pred ccccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccc-ccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-IGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~ 236 (510)
..++.++.||.+.++.|. ++. +|..+.++..|.+|||++|. +++.|..+...+++-.|++++| .+..+|.. +.+
T Consensus 72 GELs~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfin 148 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFIN 148 (1255)
T ss_pred hhhccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHh
Confidence 888889999999999888 554 78889999999999999998 9999999999999999999998 56777754 567
Q ss_pred cccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCC
Q 010462 237 LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRR 316 (510)
Q Consensus 237 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 316 (510)
++.|-.|+++.+.... .++....|.+|+.|.+++ +.........+..+++|+.|.+++..
T Consensus 149 LtDLLfLDLS~NrLe~----LPPQ~RRL~~LqtL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq------------ 208 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM----LPPQIRRLSMLQTLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ------------ 208 (1255)
T ss_pred hHhHhhhccccchhhh----cCHHHHHHhhhhhhhcCC----ChhhHHHHhcCccchhhhhhhccccc------------
Confidence 7788888888776654 677788888899888876 22333445566677888888887764
Q ss_pred CCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcccc
Q 010462 317 ENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSV 396 (510)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l 396 (510)
.....+|.++..+.+|..++++.|.... +| ..+-.+++|+.|+|++|.+.+---..+...+|+.|+++.|. +
T Consensus 209 ----RTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-L 280 (1255)
T KOG0444|consen 209 ----RTLDNIPTSLDDLHNLRDVDLSENNLPI--VP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-L 280 (1255)
T ss_pred ----chhhcCCCchhhhhhhhhccccccCCCc--ch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-h
Confidence 2446678888889999999999999888 89 88889999999999999554433336677899999999987 6
Q ss_pred EEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCc
Q 010462 397 KRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476 (510)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 476 (510)
..+|..+ -.+++|+.|.+.++. |. + +.+|..++.+.+|+.+..++| +++-+|+++..|..|+
T Consensus 281 t~LP~av------------cKL~kL~kLy~n~Nk-L~---F-eGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 281 TVLPDAV------------CKLTKLTKLYANNNK-LT---F-EGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQ 342 (1255)
T ss_pred ccchHHH------------hhhHHHHHHHhccCc-cc---c-cCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHH
Confidence 6666533 378899999887764 33 2 357888899999999999888 7899999999999999
Q ss_pred EEEEcCCcc
Q 010462 477 KLHIRRCPI 485 (510)
Q Consensus 477 ~L~l~~c~~ 485 (510)
.|.++.|..
T Consensus 343 kL~L~~NrL 351 (1255)
T KOG0444|consen 343 KLKLDHNRL 351 (1255)
T ss_pred Hhcccccce
Confidence 999998864
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.5e-23 Score=226.67 Aligned_cols=302 Identities=22% Similarity=0.245 Sum_probs=174.5
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcc
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
+||.|.+.++. ... +|..| ...+|+.|++. ++.+..+|..+..+++|++|+++++..++.+|. +..+
T Consensus 590 ~Lr~L~~~~~~---l~~-lP~~f-~~~~L~~L~L~-------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYP---LRC-MPSNF-RPENLVKLQMQ-------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA 656 (1153)
T ss_pred ccEEEEecCCC---CCC-CCCcC-CccCCcEEECc-------CccccccccccccCCCCCEEECCCCCCcCcCCc-cccC
Confidence 35555555543 222 33323 23455555555 555555555555555555555555444444543 4555
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCcc-------------
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRAC------------- 256 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~------------- 256 (510)
++|++|++++|..+..+|..++++++|+.|++++|..+..+|..+ .+++|+.|++.+|........
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 555555555555455555555555555555555554455555443 344555554444322110000
Q ss_pred ---CcccccccccCCCceecCcccCCC---hhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 257 ---SLGSLKKLNLLRDCRIRGLGDVSD---AGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 257 ---~~~~l~~l~~L~~l~i~~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
.++....+++|+.|.+..+..... ............++|+.|+++.|. ....+|..+
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------------~l~~lP~si 798 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------------SLVELPSSI 798 (1153)
T ss_pred ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------------CccccChhh
Confidence 001111233444444333211000 000001112234678888888775 344567778
Q ss_pred CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCC
Q 010462 331 GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDT 410 (510)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 410 (510)
..+++|+.|++++|...+. +| ... .+++|+.|++++|..+..+|.. .++|+.|+|+++. ++.+|..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~-LP-~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s-------- 864 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLET-LP-TGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW-------- 864 (1153)
T ss_pred hCCCCCCEEECCCCCCcCe-eC-CCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH--------
Confidence 8899999999999876554 67 333 6899999999999888777753 4689999998875 6655543
Q ss_pred CCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 411 DGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
+..+++|+.|++.+|++|+.+... +..+++|+.|++++|..+..++
T Consensus 865 ----i~~l~~L~~L~L~~C~~L~~l~~~------~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 ----IEKFSNLSFLDMNGCNNLQRVSLN------ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ----HhcCCCCCEEECCCCCCcCccCcc------cccccCCCeeecCCCccccccc
Confidence 347899999999999998876543 2478999999999998886543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=5.1e-26 Score=204.49 Aligned_cols=263 Identities=23% Similarity=0.241 Sum_probs=168.6
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.....+.+..+.......++. .+..+.+|.++.|+ ... .|.+++.+..++.|+.+ ++.+..+|..
T Consensus 45 v~l~~lils~N~l~~l~~dl~----nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs-------~n~ls~lp~~ 109 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK----NLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVS-------HNKLSELPEQ 109 (565)
T ss_pred cchhhhhhccCchhhccHhhh----cccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcc-------cchHhhccHH
Confidence 345556666666665555555 77888888888876 444 55567777788888887 7778888888
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++.+..|+.|+.++|. ...+|++++.+..|+.|+..+|. +..+|.+++.+.+|..|++.+| .+..+|+..-.++.|+
T Consensus 110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHH
Confidence 8888888888888877 77777778888888888877777 7777777777777777777777 3445554444477777
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
+|+...+-..+ .+.+++.+.+|..|++..-.- .....|.++..|.+|++..|.
T Consensus 187 ~ld~~~N~L~t----lP~~lg~l~~L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~----------------- 239 (565)
T KOG0472|consen 187 HLDCNSNLLET----LPPELGGLESLELLYLRRNKI------RFLPEFPGCSLLKELHVGENQ----------------- 239 (565)
T ss_pred hcccchhhhhc----CChhhcchhhhHHHHhhhccc------ccCCCCCccHHHHHHHhcccH-----------------
Confidence 77665554433 555566655555555443100 011245555666666666553
Q ss_pred hhHhhhccC-CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 322 EDERLLEAL-GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
.+.++... ..++++..|++.+|...+ +| +-+.-+++|++|++++|....-.+.++++ .|+.|.+.|++
T Consensus 240 -i~~lpae~~~~L~~l~vLDLRdNklke--~P-de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 240 -IEMLPAEHLKHLNSLLVLDLRDNKLKE--VP-DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred -HHhhHHHHhcccccceeeecccccccc--Cc-hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 22333332 355666777777777666 66 66666667777777766444333346666 66666666654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=7.6e-24 Score=190.58 Aligned_cols=249 Identities=23% Similarity=0.288 Sum_probs=205.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.-..+..+.+++|. ...+.++ +..+..|.+|+++ ++....+|.+++.+..++.|+.+.|. +..+|..+
T Consensus 43 ~qv~l~~lils~N~---l~~l~~d-l~nL~~l~vl~~~-------~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i 110 (565)
T KOG0472|consen 43 EQVDLQKLILSHND---LEVLRED-LKNLACLTVLNVH-------DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQI 110 (565)
T ss_pred hhcchhhhhhccCc---hhhccHh-hhcccceeEEEec-------cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence 34557788899987 4443444 8899999999999 99999999999999999999999999 99999999
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
+.+.+|..|+.+.|. ..++|++++.+..|..|+..+| .+..+|++++.+.+|..+.+.++.... .....-+++.
T Consensus 111 ~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~----l~~~~i~m~~ 184 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKA----LPENHIAMKR 184 (565)
T ss_pred hhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhh----CCHHHHHHHH
Confidence 999999999999999 8889999999999999999888 668899999999999999888777654 3344444666
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.++... ..-+..+..++.+.+|+.|++..|. ..+.+.++.+..|++|++..|.+
T Consensus 185 L~~ld~~~-----N~L~tlP~~lg~l~~L~~LyL~~Nk-------------------i~~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 185 LKHLDCNS-----NLLETLPPELGGLESLELLYLRRNK-------------------IRFLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHhcccch-----hhhhcCChhhcchhhhHHHHhhhcc-------------------cccCCCCCccHHHHHHHhcccHH
Confidence 66665542 2335566788889999999999986 22334788899999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
.. +|.....+++++..|++..| .++.+|. +..+.+|++|+++++. ++.+|.
T Consensus 241 ~~--lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~ 292 (565)
T KOG0472|consen 241 EM--LPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPY 292 (565)
T ss_pred Hh--hHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCc
Confidence 87 88555669999999999999 5677776 8889999999999877 665554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=9.5e-22 Score=194.69 Aligned_cols=349 Identities=21% Similarity=0.215 Sum_probs=201.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
-++++|.+.++.+..+|..+. ..++|+.|.++.|. +.. .|.....+++|++|.|. ++....+|.+
T Consensus 45 v~L~~l~lsnn~~~~fp~~it----~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~-------~n~l~~lP~~ 109 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQIT----LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLK-------NNRLQSLPAS 109 (1081)
T ss_pred eeeEEeeccccccccCCchhh----hHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheec-------cchhhcCchh
Confidence 347888888888887777776 88889999998887 555 66778888899999998 8888888988
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccce-----------------------------------------eccCCC
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLER-----------------------------------------LNVDHC 200 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~-----------------------------------------L~L~~~ 200 (510)
+..+++|++|++++|. ...+|..+..+..++. |+|+.|
T Consensus 110 ~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N 188 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN 188 (1081)
T ss_pred HHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccc
Confidence 8889999999999888 6666644333333333 333333
Q ss_pred CccccCchhhhc------------------------------------------cccCceeecCCCcccccccccccCcc
Q 010462 201 KNLRELPRGIGK------------------------------------------LRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 201 ~~~~~lp~~~~~------------------------------------------l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
... .+ .+.. -.+|++++++.+ .+..+|..++.+.
T Consensus 189 ~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 189 EME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACA 264 (1081)
T ss_pred hhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcc
Confidence 311 00 0000 113444444444 3456667777788
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|..+....+.... .+..+.....|+.+.+..++- +-.+......++|+.|++..|.....+......+..
T Consensus 265 nle~l~~n~N~l~~----lp~ri~~~~~L~~l~~~~nel-----~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 265 NLEALNANHNRLVA----LPLRISRITSLVSLSAAYNEL-----EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred cceEecccchhHHh----hHHHHhhhhhHHHHHhhhhhh-----hhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 88888777766543 444455555555554443211 111223344567777777777654443322222211
Q ss_pred cchhhHhhhccC--------CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCcccee
Q 010462 319 EEDEDERLLEAL--------GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYL 388 (510)
Q Consensus 319 ~~~~~~~~~~~l--------~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L 388 (510)
.-.........+ ..++.|+.|.+.+|....+.+| .+.++++|+.|+|++| .+..+|. +.+++.|++|
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh--hhccccceeeeeeccc-ccccCCHHHHhchHHhHHH
Confidence 100000000000 1124566667777766665455 4556677777777776 4455554 6667777777
Q ss_pred eccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccccc--CC
Q 010462 389 EIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKA--LP 466 (510)
Q Consensus 389 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp 466 (510)
+|+||+ ++.++... ..++.|+.|...++. +.. .| .+..++.|+.++++.|. +.. +|
T Consensus 413 ~LSGNk-L~~Lp~tv------------a~~~~L~tL~ahsN~-l~~------fP-e~~~l~qL~~lDlS~N~-L~~~~l~ 470 (1081)
T KOG0618|consen 413 NLSGNK-LTTLPDTV------------ANLGRLHTLRAHSNQ-LLS------FP-ELAQLPQLKVLDLSCNN-LSEVTLP 470 (1081)
T ss_pred hcccch-hhhhhHHH------------HhhhhhHHHhhcCCc-eee------ch-hhhhcCcceEEecccch-hhhhhhh
Confidence 777766 55555332 255666666554432 222 22 23466677777776653 322 23
Q ss_pred cccCCCCCCcEEEEcCCcc
Q 010462 467 DHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 467 ~~~~~l~~L~~L~l~~c~~ 485 (510)
.... .++|++||++||++
T Consensus 471 ~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhCC-CcccceeeccCCcc
Confidence 2222 26677777777663
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=6.7e-20 Score=181.74 Aligned_cols=357 Identities=21% Similarity=0.220 Sum_probs=186.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~ 163 (510)
+.+|.+..|..-..|-.+ +.++-+|++|++++|. +.. +|..+..+.+|+.|+++ .|.+..+|.+++
T Consensus 23 ~~~ln~~~N~~l~~pl~~---~~~~v~L~~l~lsnn~---~~~-fp~~it~l~~L~~ln~s-------~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEF---VEKRVKLKSLDLSNNQ---ISS-FPIQITLLSHLRQLNLS-------RNYIRSVPSSCS 88 (1081)
T ss_pred HHhhhccccccccCchHH---hhheeeeEEeeccccc---ccc-CCchhhhHHHHhhcccc-------hhhHhhCchhhh
Confidence 555566555544333222 2244458888888887 434 56667778888888888 888888888888
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc-------------
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL------------- 230 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~------------- 230 (510)
++.+|++|+|.+|. +..+|.++..+++|+.|+++.|. ....|.-+..++.++.+..++|..+..+
T Consensus 89 ~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n 166 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLN 166 (1081)
T ss_pred hhhcchhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhh
Confidence 88888888888887 78888888888888888888887 6667766666666666666665322222
Q ss_pred ------cccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 231 ------PAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 231 ------p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
+.+++.++. .|++..+... ...+..+.+|+.+....... . ..--.-++|+.|+.+.|.
T Consensus 167 ~l~~~~~~~i~~l~~--~ldLr~N~~~------~~dls~~~~l~~l~c~rn~l-s-------~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 167 VLGGSFLIDIYNLTH--QLDLRYNEME------VLDLSNLANLEVLHCERNQL-S-------ELEISGPSLTALYADHNP 230 (1081)
T ss_pred hcccchhcchhhhhe--eeecccchhh------hhhhhhccchhhhhhhhccc-c-------eEEecCcchheeeeccCc
Confidence 222222222 2333322221 12222333333322211000 0 000011233333333332
Q ss_pred CCCCCcccc----cCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C
Q 010462 305 SRDGDEERA----GRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L 379 (510)
Q Consensus 305 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~ 379 (510)
....+..+. ...+........+++++..+.+|+.++..+|.+.. +| .-+....+|++|.+..|. +..+|. .
T Consensus 231 l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~--lp-~ri~~~~~L~~l~~~~ne-l~yip~~l 306 (1081)
T KOG0618|consen 231 LTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA--LP-LRISRITSLVSLSAAYNE-LEYIPPFL 306 (1081)
T ss_pred ceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh--hH-HHHhhhhhHHHHHhhhhh-hhhCCCcc
Confidence 110000000 00000000123334444555555555555555544 44 344445555555555553 333443 5
Q ss_pred CCCCccceeeccCccccEEecccccCCCCC--------------CCCCcccccccccccccccccccccccccccccccc
Q 010462 380 GKLPSLEYLEIEGMKSVKRVGNEFLGVESD--------------TDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREI 445 (510)
Q Consensus 380 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 445 (510)
..+.+|+.|+|..|. +..+|..++..... ..+..-..++.|+.|.+.++. | ++.+-..+
T Consensus 307 e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-L-----td~c~p~l 379 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-L-----TDSCFPVL 379 (1081)
T ss_pred cccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-c-----cccchhhh
Confidence 668888888888776 55555433221110 000001123444444444432 2 22223334
Q ss_pred ccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCc
Q 010462 446 IIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 446 ~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 484 (510)
..+++|+.|++++| .+..+|. .+.+++.|++|+++||.
T Consensus 380 ~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch
Confidence 57888888888888 5677776 45678888888888884
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=2.6e-16 Score=160.79 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=66.4
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcc
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
.-..|+++.+. +.. +|..+. ++|+.|++. +|.+..+|.. +++|++|++++|. ++.+|.. .
T Consensus 202 ~~~~LdLs~~~---Lts-LP~~l~--~~L~~L~L~-------~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCC---CCc-CCcchh--cCCCEEEcc-------CCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---c
Confidence 34566677665 333 343333 367777777 6666666642 4667777777776 6666642 3
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
++|+.|++++|. +..+|... .+|+.|++++| .+..+|.. .++|+.|++..+..
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L 314 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQL 314 (788)
T ss_pred cccceeeccCCc-hhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCcc
Confidence 566777777776 55565422 45666777776 34455542 34566666655543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=4e-17 Score=147.39 Aligned_cols=302 Identities=20% Similarity=0.192 Sum_probs=186.8
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
+...+.+..++|..++ +....+.|..|. +..+.+.+|+.+++||+|||+ +|.|..| |+.|..+
T Consensus 51 VdCr~~GL~eVP~~LP------~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-------~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP------PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-------KNNISFIAPDAFKGL 114 (498)
T ss_pred EEccCCCcccCcccCC------CcceEEEeccCC---cccCChhhccchhhhceeccc-------ccchhhcChHhhhhh
Confidence 3455566777888776 567789999998 777788999999999999999 9999999 8999999
Q ss_pred CccceEeccC-CCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccc-cccCcccccc
Q 010462 166 LHLKYLSLFG-QKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRS 242 (510)
Q Consensus 166 ~~L~~L~l~~-~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~ 242 (510)
..|..|-+-+ |+ ++.+|+ .|.+|..|+.|.+..|+..-.....+..|++|..|.+.+| ..+.++. .+..+..+++
T Consensus 115 ~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 115 ASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKT 192 (498)
T ss_pred HhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccch
Confidence 9998888877 55 999997 4788999999999999844455567899999999999998 4566665 5777888888
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchh
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDE 322 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 322 (510)
+.+..+... ...+++.+.... ......++.........+.+.... ...
T Consensus 193 lhlA~np~i--------cdCnL~wla~~~-----------a~~~ietsgarc~~p~rl~~~Ri~-------------q~~ 240 (498)
T KOG4237|consen 193 LHLAQNPFI--------CDCNLPWLADDL-----------AMNPIETSGARCVSPYRLYYKRIN-------------QED 240 (498)
T ss_pred HhhhcCccc--------cccccchhhhHH-----------hhchhhcccceecchHHHHHHHhc-------------ccc
Confidence 877654322 112222221100 000000000000000011110000 000
Q ss_pred hHhhhccCCCCCCcc-EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEec
Q 010462 323 DERLLEALGPPPNLK-KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVG 400 (510)
Q Consensus 323 ~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~ 400 (510)
...+... ...+. .+....+.... .|...|..+++|++|++++|+....-+. +..+..+++|+|..|+ ++.+.
T Consensus 241 a~kf~c~---~esl~s~~~~~d~~d~~--cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~ 314 (498)
T KOG4237|consen 241 ARKFLCS---LESLPSRLSSEDFPDSI--CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVS 314 (498)
T ss_pred hhhhhhh---HHhHHHhhccccCcCCc--ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHH
Confidence 0111111 11111 11112222222 5656677888888888888854443333 7778888888888776 54443
Q ss_pred ccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 401 NEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
... +.++..|+.|+++++. ++...|..|..+.+|.+|.+-.||.
T Consensus 315 ~~~-----------f~~ls~L~tL~L~~N~------it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 315 SGM-----------FQGLSGLKTLSLYDNQ------ITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHh-----------hhccccceeeeecCCe------eEEEecccccccceeeeeehccCcc
Confidence 322 2356667777665543 3334455556666777777766654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=2.6e-15 Score=153.57 Aligned_cols=260 Identities=20% Similarity=0.182 Sum_probs=165.4
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~ 163 (510)
-..|.+..+.+..+|..+. ++|+.|.+.+|. +.. +|. ..++|++|+++ +|.+..+|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs-------~N~LtsLP~l-- 260 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPVL-- 260 (788)
T ss_pred CcEEEcCCCCCCcCCcchh------cCCCEEEccCCc---CCC-CCC---CCCCCcEEEec-------CCccCcccCc--
Confidence 3467777777776676554 489999999998 333 343 25789999999 9999999863
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 243 (510)
.++|+.|++++|. +..+|... .+|+.|++++|. +..+|.. +++|++|++++| .+..+|... .+|+.|
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L 327 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKL 327 (788)
T ss_pred -ccccceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---cccccc
Confidence 4689999999998 88888733 578899999998 8888863 478999999999 445566532 345555
Q ss_pred CcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhh
Q 010462 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323 (510)
Q Consensus 244 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (510)
.+..+.... ++.+ ..+|+.|++++|.+.
T Consensus 328 ~Ls~N~L~~--------LP~l---------------------------p~~Lq~LdLS~N~Ls----------------- 355 (788)
T PRK15387 328 WAYNNQLTS--------LPTL---------------------------PSGLQELSVSDNQLA----------------- 355 (788)
T ss_pred ccccCcccc--------cccc---------------------------ccccceEecCCCccC-----------------
Confidence 554433221 1110 124566666665411
Q ss_pred HhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccc
Q 010462 324 ERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEF 403 (510)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~ 403 (510)
.++. .+++|+.|++++|.+.. +| .. ..+|+.|++++|. +..+|.. .++|+.|++++|. ++.+|.
T Consensus 356 -~LP~---lp~~L~~L~Ls~N~L~~--LP-~l---~~~L~~LdLs~N~-Lt~LP~l--~s~L~~LdLS~N~-LssIP~-- 419 (788)
T PRK15387 356 -SLPT---LPSELYKLWAYNNRLTS--LP-AL---PSGLKELIVSGNR-LTSLPVL--PSELKELMVSGNR-LTSLPM-- 419 (788)
T ss_pred -CCCC---CCcccceehhhcccccc--Cc-cc---ccccceEEecCCc-ccCCCCc--ccCCCEEEccCCc-CCCCCc--
Confidence 1111 12456667777776665 66 32 3467777777774 3345432 2567777777765 443332
Q ss_pred cCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 404 LGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
.+.+|+.|+++++. ++ .+|..+..+++|+.|++++|+.-...|
T Consensus 420 -------------l~~~L~~L~Ls~Nq-Lt------~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 -------------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -------------chhhhhhhhhccCc-cc------ccChHHhhccCCCeEECCCCCCCchHH
Confidence 12356666666543 33 245555667777777777776544433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=3.9e-15 Score=153.25 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=49.9
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL 216 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 216 (510)
+|+.|+++ +|.+..+|..+. .+|++|++++|. ++.+|..+. .+|+.|++++|. +..+|..+. .+|
T Consensus 200 ~L~~L~Ls-------~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L 264 (754)
T PRK15370 200 QITTLILD-------NNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SAL 264 (754)
T ss_pred CCcEEEec-------CCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCC
Confidence 45666666 555555555443 356666666665 555555433 356666666665 445555443 356
Q ss_pred ceeecCCCcccccccccccCcccccccCcEEE
Q 010462 217 MYLHNEGTDSLRYLPAGIGELIRLRSVRKFVV 248 (510)
Q Consensus 217 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 248 (510)
+.|++++| .+..+|..+. .+|+.|+++.+
T Consensus 265 ~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 265 QSLDLFHN-KISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CEEECcCC-ccCccccccC--CCCcEEECCCC
Confidence 66666655 3334554432 34555554443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.5e-17 Score=130.85 Aligned_cols=150 Identities=28% Similarity=0.370 Sum_probs=75.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|.++++.+..+|..+. .+.+|++|++.+|+ +.+ +|..+++++.||.|++. -+.+..+|..
T Consensus 33 s~ITrLtLSHNKl~~vppnia----~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-------mnrl~~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIA----ELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-------MNRLNILPRG 97 (264)
T ss_pred hhhhhhhcccCceeecCCcHH----Hhhhhhhhhcccch---hhh-cChhhhhchhhhheecc-------hhhhhcCccc
Confidence 444555555555554444444 55555555555554 333 34445555555555555 4445555555
Q ss_pred ccccCccceEeccCCCCcc-ccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 162 IEKLLHLKYLSLFGQKKIE-KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
|+.++.|+.|++.+|..-+ .+|..|..+..|+.|.+++|. .+.+|..++++++|+.|.+..| .+-.+|.+++.++.|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~l 175 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRL 175 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHH
Confidence 5555555555555544211 145555555555555555554 4455555555555555555555 233445555555555
Q ss_pred cccCcEEE
Q 010462 241 RSVRKFVV 248 (510)
Q Consensus 241 ~~L~l~~~ 248 (510)
++|.+.++
T Consensus 176 relhiqgn 183 (264)
T KOG0617|consen 176 RELHIQGN 183 (264)
T ss_pred HHHhcccc
Confidence 55554443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.7e-17 Score=130.71 Aligned_cols=151 Identities=22% Similarity=0.278 Sum_probs=133.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+.+.+.|.++.|+ +.- +|..+..+.+|++|+++ ++.+.++|.+++.+++|+.|+++-|+ +..+|..|
T Consensus 31 ~~s~ITrLtLSHNK---l~~-vppnia~l~nlevln~~-------nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK---LTV-VPPNIAELKNLEVLNLS-------NNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCc---eee-cCCcHHHhhhhhhhhcc-------cchhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 77888999999998 444 44459999999999999 99999999999999999999999999 89999999
Q ss_pred hcccccceeccCCCCcc-ccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 187 CELYNLERLNVDHCKNL-RELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
+.++.|++||+..|... ..+|..|..++.|+-|++++| ....+|..++++++|+.|.+..+...+ .+.+++.+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLT 173 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHH
Confidence 99999999999988732 468999999999999999999 558899999999999999998887665 677788888
Q ss_pred cCCCceecC
Q 010462 266 LLRDCRIRG 274 (510)
Q Consensus 266 ~L~~l~i~~ 274 (510)
+|+.|.|.+
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 888887765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=1.9e-15 Score=157.91 Aligned_cols=326 Identities=24% Similarity=0.307 Sum_probs=222.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc--ccccccc-ccccCccceEeccCCCCccccc
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF--IKKIPTN-IEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp 183 (510)
.....|...+.+|.+.. .+. -..++.|+.|-+. .+. +..++.. |..++.|++|||++|.....+|
T Consensus 521 ~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~-------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQ-------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchhh----ccC-CCCCCccceEEEe-------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 56788999999987322 222 2345579999988 664 6666544 6679999999999998899999
Q ss_pred hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 184 ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 184 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+++.|-+||+|+++++. +..+|.++++|++|.+|++..+.....+|.....|.+|++|.+..... ......+.++..
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-SNDKLLLKELEN 666 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-ccchhhHHhhhc
Confidence 999999999999999999 899999999999999999999987777777777799999999887652 122556677777
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
|.+|+.+.+..... .....+..+..|..+...-.. ........+..+..+.+|+.|.+.+
T Consensus 667 Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~--------------~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 667 LEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSI--------------EGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred ccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhh--------------cccccceeecccccccCcceEEEEc
Confidence 77777777653221 111122223333322111110 0002234556677889999999999
Q ss_pred cCCccCCCchhHHh-----h-hhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccc
Q 010462 344 YRGRRNVVPISWFM-----S-LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417 (510)
Q Consensus 344 ~~~~~~~~p~~~~~-----~-l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 417 (510)
|...+ ....|.. . |+++..+.+.+|.....+.+....|+|+.|.+..|..++.+....-..... ......
T Consensus 727 ~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~~i~~ 802 (889)
T KOG4658|consen 727 CGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KELILP 802 (889)
T ss_pred CCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--ccEEec
Confidence 99865 2212321 3 778888888899877777777778999999999999777653321111000 001235
Q ss_pred ccccccc-cccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 418 FPKLKHL-TFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 418 ~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
|.++..+ .+.+...+..+..... .++.|+.+.+..||+++.+| .+.++.+.+|
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ccccccceeeecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 6666666 4566555555443221 45668888888888776655 4555666665
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=7.3e-15 Score=151.27 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=74.9
Q ss_pred CceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
.+..+|+++ +..+..+|..+. .+|+.|++++|. ++.+|..+. .+|++|++++|. +..+|..+. .+
T Consensus 178 ~~~~~L~L~-------~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~ 242 (754)
T PRK15370 178 NNKTELRLK-------ILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DT 242 (754)
T ss_pred cCceEEEeC-------CCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--cc
Confidence 356889998 888888887664 579999999998 888988665 589999999988 778887664 47
Q ss_pred CceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
|+.|++++|. +..+|..+. ++|+.|++..+..
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCCcc
Confidence 9999999984 457776654 4677777765543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=5e-16 Score=140.39 Aligned_cols=280 Identities=19% Similarity=0.131 Sum_probs=191.4
Q ss_pred CCCCCceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc
Q 010462 78 SFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK 157 (510)
Q Consensus 78 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 157 (510)
...+.....|.+..|.+..+|... |+.+++||.|+|++|. +..+-|++|..++.|-.|-+.+ +|.|.+
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~a---F~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~ 130 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGA---FKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITD 130 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhh---ccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhh
Confidence 333478889999999998877654 4599999999999998 7777899999999998888771 488999
Q ss_pred ccc-cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-------
Q 010462 158 IPT-NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR------- 228 (510)
Q Consensus 158 lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~------- 228 (510)
+|. .|+++..|+-|.+.-|+.--.....+..+++|..|.+.+|. +..++. .+..+..++.+++..|..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 975 57789999999999998333445678999999999999998 777777 68889999999998875321
Q ss_pred -----cccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEec
Q 010462 229 -----YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG 303 (510)
Q Consensus 229 -----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 303 (510)
..|..++.....+-..+....... ...-.....+..+..---..+ .. ........|..+++|+++++++|
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q--~~a~kf~c~~esl~s~~~~~d--~~-d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQ--EDARKFLCSLESLPSRLSSED--FP-DSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcc--cchhhhhhhHHhHHHhhcccc--Cc-CCcChHHHHhhcccceEeccCCC
Confidence 112222222222211111111111 000000011111111000000 00 11223345888899999999988
Q ss_pred CCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCC
Q 010462 304 HSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKL 382 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l 382 (510)
. ....-..++.....+++|.|..|.+.. +....|..+.+|+.|+|++|++....|. +..+
T Consensus 285 ~-----------------i~~i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 285 K-----------------ITRIEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred c-----------------cchhhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 7 444555677788889999999888766 5546677889999999999977776665 7888
Q ss_pred CccceeeccCcc
Q 010462 383 PSLEYLEIEGMK 394 (510)
Q Consensus 383 ~~L~~L~L~~~~ 394 (510)
.+|.+|+|-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888887654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=4.3e-15 Score=141.94 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccc-------cccccccccCccceEeccCCCC
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIK-------KIPTNIEKLLHLKYLSLFGQKK 178 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~lp~~i~~l~~L~~L~l~~~~~ 178 (510)
.+++|+.|.+.++.+.... ..++..+...+.++.|+++ ++.+. .++..+.++++|++|++++|.+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 4445666666655421100 0133334455555666555 33222 1233344455555555555552
Q ss_pred ccccchhhhcccc---cceeccCCCCccc----cCchhhhcc-ccCceeecCCC
Q 010462 179 IEKLPETLCELYN---LERLNVDHCKNLR----ELPRGIGKL-RKLMYLHNEGT 224 (510)
Q Consensus 179 ~~~lp~~~~~l~~---L~~L~L~~~~~~~----~lp~~~~~l-~~L~~L~l~~~ 224 (510)
....+..+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 2233333333333 5555555554211 112223334 45555555555
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=4.1e-14 Score=135.16 Aligned_cols=244 Identities=20% Similarity=0.137 Sum_probs=123.7
Q ss_pred hHhhhcCCceeEEEecccccccccccc-----ccccccccccCccceEeccCCCCccc-------cchhhhcccccceec
Q 010462 129 PQLFDKLTCLRALKLEVREQGLYTNFI-----KKIPTNIEKLLHLKYLSLFGQKKIEK-------LPETLCELYNLERLN 196 (510)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~lp~~i~~l~~L~~L~l~~~~~~~~-------lp~~~~~l~~L~~L~ 196 (510)
...|..+..|++|+++ ++.+ ..++..+...++|++|+++++. +.. ++..+..+++|+.|+
T Consensus 16 ~~~~~~l~~L~~l~l~-------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 16 TELLPKLLCLQVLRLE-------GNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred HHHHHHHhhccEEeec-------CCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEE
Confidence 3345555666667666 5444 2344445555666666666655 331 233455566677777
Q ss_pred cCCCCccccCchhhhcccc---CceeecCCCcccc----cccccccCc-ccccccCcEEEeCccC-CccCcccccccccC
Q 010462 197 VDHCKNLRELPRGIGKLRK---LMYLHNEGTDSLR----YLPAGIGEL-IRLRSVRKFVVGGGYD-RACSLGSLKKLNLL 267 (510)
Q Consensus 197 L~~~~~~~~lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L 267 (510)
+++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++..+..... .......+..+.+|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 7666643344444444444 6667666664321 122233444 5666666665554420 01122234444556
Q ss_pred CCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCc
Q 010462 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347 (510)
Q Consensus 268 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (510)
+.+++.++.-...........+...++|+.|++++|... +.....+...+..+++|++|++++|...
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~-------------~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT-------------DEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC-------------hHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 666665432211111222333444567777777666411 1122334445556677777777776654
Q ss_pred cCCCchhHHhh----hhcccceeccCccCCC----cCCC-CCCCCccceeeccCcc
Q 010462 348 RNVVPISWFMS----LTNLRFLFLFGWRNCE----HLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 348 ~~~~p~~~~~~----l~~L~~L~L~~~~~~~----~l~~-~~~l~~L~~L~L~~~~ 394 (510)
...+. ..... .+.|++|++++|.... .+.. +..+++|+++++++|.
T Consensus 235 ~~~~~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 235 DAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred hHHHH-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 31011 11122 2577777777774431 1111 4455777777777765
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.7e-12 Score=123.22 Aligned_cols=195 Identities=26% Similarity=0.281 Sum_probs=144.5
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~ 166 (510)
+.+++.....+|..... -.+..-...+++.|+ ... +|..+..|..|..+.|+ .|.+..+|..++++.
T Consensus 55 l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR---~~e-lp~~~~~f~~Le~liLy-------~n~~r~ip~~i~~L~ 121 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNR---FSE-LPEEACAFVSLESLILY-------HNCIRTIPEAICNLE 121 (722)
T ss_pred cccccchhhcCCCcccc--ccccchhhhhccccc---ccc-CchHHHHHHHHHHHHHH-------hccceecchhhhhhh
Confidence 34444444444433220 145555677888887 444 66668888899999999 999999999999999
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
.|.+|+|+.|+ +..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 99999999999 999999888886 9999999998 9999999999999999999999 567888889999999999988
Q ss_pred EEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCC
Q 010462 247 VVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDG 308 (510)
Q Consensus 247 ~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 308 (510)
.+.... .+.++..|+ |..|+++. .++. ..+..|.+|..|+.|.+.+|.++.+
T Consensus 198 Rn~l~~----lp~El~~Lp-Li~lDfSc-Nkis----~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 198 RNHLED----LPEELCSLP-LIRLDFSC-NKIS----YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhh----CCHHHhCCc-eeeeeccc-Ccee----ecchhhhhhhhheeeeeccCCCCCC
Confidence 877654 555666554 55555552 2221 2344555666666666666654433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.3e-10 Score=97.68 Aligned_cols=126 Identities=28% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
++.+++.|++.+|.+..+.. +. .+.+|++|+++ +|.+..++ .+..+++|++|++++|. ++.++..
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-------~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-------NNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T-------TS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC-------CCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 45566777777776333322 33 45677777777 77777774 46667777777777777 7777554
Q ss_pred h-hcccccceeccCCCCccccCc--hhhhccccCceeecCCCccccccc----ccccCcccccccCcEEE
Q 010462 186 L-CELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLP----AGIGELIRLRSVRKFVV 248 (510)
Q Consensus 186 ~-~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l~~~ 248 (510)
+ ..+++|+.|++++|. +..+- ..+..+++|++|++.+|+.... + ..+..+++|+.|+....
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 4 357777777777776 44332 2356677777777777754321 2 23556777777775543
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=1.8e-11 Score=112.14 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=159.3
Q ss_pred ccceEeccCCCCccccc--hhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCccccccc--ccccCcccc
Q 010462 167 HLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRL 240 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L 240 (510)
.|+.|.++++..++.-+ ....+++++++|.+.+|..++.- -..-..+++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555554332221 22334555555555555533321 1111235555566555553332111 112234555
Q ss_pred cccCcEEEeCccCCccCccc-ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 241 RSVRKFVVGGGYDRACSLGS-LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~-l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
..++++++.... +..+.. ......++.+...+|..... +.....-+++..+.++++..|. ..
T Consensus 219 ~~lNlSwc~qi~--~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~-~l------------ 281 (483)
T KOG4341|consen 219 KYLNLSWCPQIS--GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCN-QL------------ 281 (483)
T ss_pred HHhhhccCchhh--cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhc-cc------------
Confidence 555555554333 111111 12233334443334433221 2222222334445555554443 10
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHH-hhhhcccceeccCccCCCcCCC---CCCCCccceeeccCccc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWF-MSLTNLRFLFLFGWRNCEHLPP---LGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~-~~l~~L~~L~L~~~~~~~~l~~---~~~l~~L~~L~L~~~~~ 395 (510)
..+.....-..+..|+.|..+++....+ .+...+ .++.+|+.|.+..|+...+.-. -.+.+.|+.+++.+|..
T Consensus 282 --TD~~~~~i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 282 --TDEDLWLIACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred --cchHHHHHhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 1112233334566788888887776543 221222 2678888888888876655432 34678888888888763
Q ss_pred cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccccc-CCcccCCCCC
Q 010462 396 VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKA-LPDHLLQKTT 474 (510)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~ 474 (510)
+..- .+... ..++|.|+.|.+++|...+.-.+. .....-.++..|+.+.+++|+.+.+ .-+.+..+++
T Consensus 359 ~~d~--tL~sl--------s~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 359 ITDG--TLASL--------SRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred ehhh--hHhhh--------ccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 3221 11111 247889999999988765443110 0111114678899999999988754 3335667889
Q ss_pred CcEEEEcCCcchHHHhhccCCCCCCccCCCCccc
Q 010462 475 LQKLHIRRCPILEERCRKETGEDWPKIRHIPEIS 508 (510)
Q Consensus 475 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~ 508 (510)
|+.+++.+|..+....... ..+|+|+++
T Consensus 428 Leri~l~~~q~vtk~~i~~------~~~~lp~i~ 455 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISR------FATHLPNIK 455 (483)
T ss_pred cceeeeechhhhhhhhhHH------HHhhCccce
Confidence 9999999999887765443 245555554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.7e-10 Score=94.94 Aligned_cols=123 Identities=25% Similarity=0.230 Sum_probs=39.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.+.|.|++.++.+..+..--. .+.+|+.|++++|.+..+ +. +..++.|+.|+++ +|.+.++++.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~----~l~~L~~L~Ls~N~I~~l----~~-l~~L~~L~~L~L~-------~N~I~~i~~~ 82 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGA----TLDKLEVLDLSNNQITKL----EG-LPGLPRLKTLDLS-------NNRISSISEG 82 (175)
T ss_dssp -----------------S--T----T-TT--EEE-TTS--S------TT-----TT--EEE---------SS---S-CHH
T ss_pred cccccccccccccccccchhh----hhcCCCEEECCCCCCccc----cC-ccChhhhhhcccC-------CCCCCccccc
Confidence 445666777766654322111 356677777777763322 22 5566777777777 7777666544
Q ss_pred cc-ccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCch----hhhccccCceeecC
Q 010462 162 IE-KLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNE 222 (510)
Q Consensus 162 i~-~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~ 222 (510)
+. .+++|+.|.+++|. +..+.. .+..+++|+.|++.+|+ +...+. .+..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 43 46677777777776 555432 35566777777777776 433332 25566777776643
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-10 Score=103.73 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=50.3
Q ss_pred CCCCccEEEeccCCcC-ccccchhHhhhcCCceeEEEecccccccccccc----ccccc-------cccccCccceEecc
Q 010462 107 GLRGLRSLLVESGEYS-WSNEILPQLFDKLTCLRALKLEVREQGLYTNFI----KKIPT-------NIEKLLHLKYLSLF 174 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~lp~-------~i~~l~~L~~L~l~ 174 (510)
.+..++.+++++|.+. .....+...+.+.+.||.-+++ +-.. ..+|+ .+..+++|++|+|+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-------d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-------DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-------hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 6778888889988741 1222345557778888888888 3332 23333 23344566666666
Q ss_pred CCCCccccc----hhhhcccccceeccCCCC
Q 010462 175 GQKKIEKLP----ETLCELYNLERLNVDHCK 201 (510)
Q Consensus 175 ~~~~~~~lp----~~~~~l~~L~~L~L~~~~ 201 (510)
.|.+-..-+ .-+..+..|++|.|.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 665222222 223445666666666665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.3e-09 Score=107.25 Aligned_cols=123 Identities=32% Similarity=0.355 Sum_probs=99.4
Q ss_pred EEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC-ccceEeccCCCCccccchhhhcccc
Q 010462 113 SLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL-HLKYLSLFGQKKIEKLPETLCELYN 191 (510)
Q Consensus 113 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~ 191 (510)
.+....+. ... ....+..+..++.|++. ++.+.++|.....+. +|++|++++|. +..+|..+..+++
T Consensus 97 ~l~~~~~~---~~~-~~~~~~~~~~l~~L~l~-------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNR---LRS-NISELLELTNLTSLDLD-------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeeccccc---ccc-CchhhhcccceeEEecC-------CcccccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 46777765 211 12225566889999999 999999998888885 99999999999 9999888999999
Q ss_pred cceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEe
Q 010462 192 LERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 192 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 249 (510)
|+.|++++|. +..+|...+.++.|+.|++++| .+..+|..++....|++|.+..+.
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc
Confidence 9999999999 8889987779999999999999 567788766666667777766553
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-09 Score=101.43 Aligned_cols=158 Identities=19% Similarity=0.143 Sum_probs=91.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++|.+++.+......+.. ...+.|+++|.|+++.|=+..... +-.+...+++|+.|+++ .|.+...-++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls-------~Nrl~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLS-------SNRLSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccc-------cccccCCccc
Confidence 5566667766655543321 123377888888888775433333 44446777888888887 6665433221
Q ss_pred c--cccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc--cccc
Q 010462 162 I--EKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP--AGIG 235 (510)
Q Consensus 162 i--~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~l~ 235 (510)
. ..+.+|+.|.++.|+ +.. +...+..+++|+.|+|..|..+..-.....-+..|+.|+|++|..+ .++ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 1 236777788888777 331 2333445677888888777533332233344667777777777443 223 2355
Q ss_pred CcccccccCcEEEeCc
Q 010462 236 ELIRLRSVRKFVVGGG 251 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~ 251 (510)
.++.|..|++..+++.
T Consensus 269 ~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccchhhhhccccCcc
Confidence 5666666665555443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.7e-10 Score=103.09 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=65.7
Q ss_pred cCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc--CCCCCCCCccceeeccCccccEEecccccCC
Q 010462 329 ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH--LPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV 406 (510)
Q Consensus 329 ~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~ 406 (510)
.+..+|+|+.|.+.+|.... .-..-...++.|+.|+|++|..... .+..+.||.|+.|+++.|. ++++..--.+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s 293 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVES 293 (505)
T ss_pred HHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccc
Confidence 34456677777777663221 1101223567777788877755442 2447777888888877765 44432111110
Q ss_pred CCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 407 ESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 407 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
......||+|++|.+..++ ++.|..-+.+ ..+++|+.|.+..+..
T Consensus 294 -----~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l----~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 294 -----LDKTHTFPKLEYLNISENN-IRDWRSLNHL----RTLENLKHLRITLNYL 338 (505)
T ss_pred -----hhhhcccccceeeecccCc-cccccccchh----hccchhhhhhcccccc
Confidence 0113467888888877765 4444322222 3567777777766643
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.9e-10 Score=105.55 Aligned_cols=269 Identities=17% Similarity=0.128 Sum_probs=177.8
Q ss_pred cccceeccCCCCccccCc--hhhhccccCceeecCCCccccccc--ccccCcccccccCcEEEeCccCCccCcc-ccccc
Q 010462 190 YNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGGGYDRACSLG-SLKKL 264 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~l 264 (510)
..|+.|.+++|.....-| ....+++++++|.+.+|..++.-. ..-..+++|+.|++..|...+ ...+. .-..+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhh
Confidence 468999999988554332 334678999999999986543211 112346788888877655443 32333 22346
Q ss_pred ccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeec
Q 010462 265 NLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEY 344 (510)
Q Consensus 265 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 344 (510)
++|..+++++++.+.. .....-..++..++.+...+|. +...+.+...-..+..+.++++..|
T Consensus 216 ~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~---------------e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL---------------ELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred hhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc---------------cccHHHHHHHhccChHhhccchhhh
Confidence 7788888888877654 3333445556667777666554 1123334444455667788888888
Q ss_pred CCccCCCchhHHhhhhcccceeccCccCCCcCCC---CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccc
Q 010462 345 RGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP---LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKL 421 (510)
Q Consensus 345 ~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~---~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 421 (510)
....+.-....-..+..|+.|+.++|...++.+. ..+.++|+.|.+++|..++.......+ .+.+.|
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------rn~~~L 348 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------RNCPHL 348 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------cCChhh
Confidence 6655311101122688999999999977665443 457899999999999977666544443 378999
Q ss_pred ccccccccccccccccccccccccccCcccceeeeccCcccccC-----CcccCCCCCCcEEEEcCCcchHHHhh
Q 010462 422 KHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL-----PDHLLQKTTLQKLHIRRCPILEERCR 491 (510)
Q Consensus 422 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~~ 491 (510)
+.+++..|.....-.+.. .-.++|.|++|.+++|..+++- ...-..+..|+.+.+++||.+.+...
T Consensus 349 e~l~~e~~~~~~d~tL~s----ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLAS----LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcccccceehhhhHhh----hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 999999886443322211 1147899999999999877654 33345578899999999999988764
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=2e-09 Score=96.77 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=51.1
Q ss_pred HhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc----ccchh-------hhcccccc
Q 010462 130 QLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----KLPET-------LCELYNLE 193 (510)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~-------~~~l~~L~ 193 (510)
..+..+..+..++|+ +|.++. +...+.+.++|+.-+++.-- .+ .+|.. +..+++|+
T Consensus 24 ~~~~~~~s~~~l~ls-------gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLS-------GNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHhcccCceEEEecc-------CCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 336677888888888 666543 34455566777777776532 22 23433 33456777
Q ss_pred eeccCCCCccccCchh----hhccccCceeecCCC
Q 010462 194 RLNVDHCKNLRELPRG----IGKLRKLMYLHNEGT 224 (510)
Q Consensus 194 ~L~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~ 224 (510)
+||||+|.+-...+.. +..+..|++|++.+|
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 7777777633333322 345566666666666
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=1.1e-09 Score=104.46 Aligned_cols=195 Identities=23% Similarity=0.260 Sum_probs=153.7
Q ss_pred CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+..-...|++ .|+...+|..++.+..|+.+.+..|. +..+|..++++..|.+|+|+.|. +..+|..+..|
T Consensus 74 ltdt~~aDls-------rNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l- 143 (722)
T KOG0532|consen 74 LTDTVFADLS-------RNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL- 143 (722)
T ss_pred ccchhhhhcc-------ccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-
Confidence 4445567888 99999999999999999999999998 99999999999999999999999 88999988776
Q ss_pred cCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
-|+.|-+++| .++.+|..++.+..|..|+.+.|.+.+ ....+..+..|+.+.+..-.- ...+..+. .-.
T Consensus 144 pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr~l~vrRn~l-----~~lp~El~-~Lp 212 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLRDLNVRRNHL-----EDLPEELC-SLP 212 (722)
T ss_pred cceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh----chHHhhhHHHHHHHHHhhhhh-----hhCCHHHh-CCc
Confidence 5899999888 678999999988999999999888765 778888888888877764211 12223333 335
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh---hhhcccceeccCcc
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM---SLTNLRFLFLFGWR 371 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~---~l~~L~~L~L~~~~ 371 (510)
|..|+++.|. ...+|-.+..+..|+.|.|.+|.... -| ..++ ...-.++|++..|.
T Consensus 213 Li~lDfScNk------------------is~iPv~fr~m~~Lq~l~LenNPLqS--PP-AqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNK------------------ISYLPVDFRKMRHLQVLQLENNPLQS--PP-AQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCc------------------eeecchhhhhhhhheeeeeccCCCCC--Ch-HHHHhccceeeeeeecchhcc
Confidence 7788888775 34566777888889999998888776 56 4443 34456777777773
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.1e-08 Score=100.67 Aligned_cols=174 Identities=24% Similarity=0.274 Sum_probs=132.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCC-ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLT-CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
..+.++.|.+.+|. +.. ++.....+. +|+.|+++ ++.+..+|..+..+++|+.|++++|+ +..+|..
T Consensus 114 ~~~~l~~L~l~~n~---i~~-i~~~~~~~~~nL~~L~l~-------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITD-IPPLIGLLKSNLKELDLS-------DNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCcc---ccc-Cccccccchhhccccccc-------ccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 66789999999998 444 344355563 89999999 99999998889999999999999999 9999997
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
.+.+++|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+..+.++..+.+..+.... .+..+..+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED----LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee----ccchhcccc
Confidence 7799999999999998 88999877778889999999984 34555667778888877755544432 245556666
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.++.+++...... . . ..+....+++.|+++++.
T Consensus 256 ~l~~L~~s~n~i~-~----i-~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQIS-S----I-SSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceecccccccc-c----c-ccccccCccCEEeccCcc
Confidence 6777776652221 1 1 126677899999999886
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2e-09 Score=94.67 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=98.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
....|+.+++++|. +.. +..+..-.+.+|+|+++ .|.+..+- .+..+++|+.|+|++|. +..+-.+-
T Consensus 282 TWq~LtelDLS~N~---I~~-iDESvKL~Pkir~L~lS-------~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNL---ITQ-IDESVKLAPKLRRLILS-------QNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccc---hhh-hhhhhhhccceeEEecc-------ccceeeeh-hhhhcccceEeecccch-hHhhhhhH
Confidence 56778888999987 444 44446778889999998 88877773 37788889999999988 77777766
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc--cccccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL--PAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~ 251 (510)
.+|-|.++|.|+.|. ++.+ ++++++-+|.+||+++|+. ..+ ...+|+++.|+++.+.++...
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 778888999998887 6666 4588888889999988843 332 255888888888888776554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=5.4e-09 Score=92.03 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=108.0
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
+..++.|..+||+ +|.|..+-+++.-.+.+|.|++++|. +..+.. +..|++|+.|||++|. +..+-..=.
T Consensus 280 ~dTWq~LtelDLS-------~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLS-------GNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred cchHhhhhhcccc-------ccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence 5567889999999 99999998888889999999999999 887777 8999999999999998 766665556
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRG 274 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~ 274 (510)
++-+.+.|.+++| .+..+ .+++++-+|..|++..+.+.. -..+..+++|+.|+.+.+.+
T Consensus 350 KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~--ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEE--LDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccchhh--HHHhcccccccHHHHHhhcC
Confidence 7889999999998 44444 458888899999999888775 55677788888888877765
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=6.5e-08 Score=99.78 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=83.5
Q ss_pred ceeEEEeccccccccccccc-cccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 137 CLRALKLEVREQGLYTNFIK-KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
.++.|+|+ ++.+. .+|..++++.+|++|+|++|.+.+.+|..++.+++|+.|+|++|.....+|..++++++
T Consensus 419 ~v~~L~L~-------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLD-------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECC-------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47888888 77754 67888999999999999999855688988999999999999999866788999999999
Q ss_pred CceeecCCCcccccccccccCc-ccccccCcE
Q 010462 216 LMYLHNEGTDSLRYLPAGIGEL-IRLRSVRKF 246 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~ 246 (510)
|++|++++|.....+|..++.+ .++..+++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999998777888877653 234444433
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=1.3e-07 Score=65.18 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=31.3
Q ss_pred ceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCK 201 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 201 (510)
+|++|+++ +|.+..+| ..|..+++|++|++++|. ++.+|. .|.++++|++|++++|+
T Consensus 2 ~L~~L~l~-------~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-------NNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-------SSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-------CCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555 55555554 344555666666666555 444432 45556666666665554
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.2e-07 Score=97.78 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=76.4
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999667899999999999999999999667899999999999999999998878899999999999999998
Q ss_pred EEeCc
Q 010462 247 VVGGG 251 (510)
Q Consensus 247 ~~~~~ 251 (510)
.+...
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 87765
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.1e-08 Score=90.00 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=32.3
Q ss_pred ccceeccCCCCcccc--CchhhhccccCceeecCCCcccccccccccCcccccccCcEEE
Q 010462 191 NLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVV 248 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 248 (510)
.||+|||++.. ++. +-.-+..+.+|+.|.+.++..-..+...+++-.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 47777777655 321 2223456677777777776544444445555555555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.5e-09 Score=94.05 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=91.2
Q ss_pred ccCceeecCCCcccc-cccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCC
Q 010462 214 RKLMYLHNEGTDSLR-YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 292 (510)
++|++||+++..... .+-.-+..+.+|+.|.+-+.... ......+.+-.+|+.++++.+.+++. .+....+.++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccch--hHHHHHHHhh
Confidence 358888888764322 22233566777887777666554 33444555556777777777766654 2334456677
Q ss_pred CCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccC--CCchhHHhhhhcccceeccCc
Q 010462 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN--VVPISWFMSLTNLRFLFLFGW 370 (510)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~p~~~~~~l~~L~~L~L~~~ 370 (510)
+.|.+|.++||....+ ........+ -++|..|+++|+.-.-. -+. .....+++|..|+|++|
T Consensus 260 s~L~~LNlsWc~l~~~-------------~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTE-------------KVTVAVAHI--SETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhHhhcCchHhhccch-------------hhhHHHhhh--chhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccc
Confidence 7888888888761100 111111111 24677777776643210 011 22236777777777777
Q ss_pred cCCCcC-C-CCCCCCccceeeccCcccc
Q 010462 371 RNCEHL-P-PLGKLPSLEYLEIEGMKSV 396 (510)
Q Consensus 371 ~~~~~l-~-~~~~l~~L~~L~L~~~~~l 396 (510)
..+..- . .+..++.|++|.++.|..+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC
Confidence 554431 1 1556777777777777643
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=3.7e-07 Score=62.87 Aligned_cols=58 Identities=33% Similarity=0.509 Sum_probs=31.7
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCC
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQK 177 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 177 (510)
+|++|++.+|+ +..+.+.+|..+++|++|+++ +|.+..++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~-------~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK---LTEIPPDSFSNLPNLETLDLS-------NNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST---ESEECTTTTTTGTTESEEEET-------SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC---CCccCHHHHcCCCCCCEeEcc-------CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555 444344455555566666665 55555552 345555556666555554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=5.8e-08 Score=95.71 Aligned_cols=129 Identities=26% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+..+..+.+..|. +.. ....+..+++|..|++. ++.+..+...+..+++|++|++++|. ++.+.. +
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-L 136 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-cccccc-h
Confidence 44555555555554 222 11225666777777777 77777665546667777777777777 666665 6
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccc-ccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-IGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~ 251 (510)
..++.|+.|++.+|. +..+.. +..++.|+.+++++|.. ..+... +..+.+++.+.+..+...
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhccchhhheeccCc-chhccC-CccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchh
Confidence 666677777777776 555543 55577777777777743 222221 345556666665554443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2e-07 Score=91.94 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=95.8
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+..+.+..+.+......+. .+.+|+.|++.+|. +.. +...+..+++|++|+++ +|.|.++ ..
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~----~~~~l~~l~l~~n~---i~~-i~~~l~~~~~L~~L~ls-------~N~I~~i-~~ 135 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLS----KLKSLEALDLYDNK---IEK-IENLLSSLVNLQVLDLS-------FNKITKL-EG 135 (414)
T ss_pred HhHHhhccchhhhhhhhcccc----cccceeeeeccccc---hhh-cccchhhhhcchheecc-------ccccccc-cc
Confidence 334444455555543223344 88999999999998 444 22226789999999999 9999988 44
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 225 (510)
+..+..|+.|++.+|. +..++. +..+++|+.+++++|. +..+... ...+.+|+.+++.+|.
T Consensus 136 l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhhccchhhheeccCc-chhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 7778889999999999 888876 7779999999999999 6656553 5788999999999984
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.6e-06 Score=75.67 Aligned_cols=93 Identities=24% Similarity=0.056 Sum_probs=48.5
Q ss_pred hccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh-----hhhcc
Q 010462 288 ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-----SLTNL 362 (510)
Q Consensus 288 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~-----~l~~L 362 (510)
.+.++.+|+.|++..|.++.. ....+...+..++.|+.|.+.+|-....... ..+. ..|+|
T Consensus 209 gl~y~~~LevLDlqDNtft~~-------------gS~~La~al~~W~~lrEL~lnDClls~~G~~-~v~~~f~e~~~p~l 274 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTLE-------------GSRYLADALCEWNLLRELRLNDCLLSNEGVK-SVLRRFNEKFVPNL 274 (388)
T ss_pred HHHHhCcceeeeccccchhhh-------------hHHHHHHHhcccchhhhccccchhhccccHH-HHHHHhhhhcCCCc
Confidence 344566777777776653322 2233445556666677777777665442222 2222 45666
Q ss_pred cceeccCccCCCc------CCC--CCCCCccceeeccCcc
Q 010462 363 RFLFLFGWRNCEH------LPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 363 ~~L~L~~~~~~~~------l~~--~~~l~~L~~L~L~~~~ 394 (510)
..|-..+|..-.. ++. -..+|-|..|.+.+|+
T Consensus 275 ~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 275 MPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 6666666633221 121 2345556666665554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.6e-06 Score=53.62 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=15.0
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCC
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCK 201 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 201 (510)
+|++|++++|+ ++.+|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 34444444444 44444444444444444444444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.5e-06 Score=52.53 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=31.4
Q ss_pred CceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
++|++|+++ ++.+..+|..+++|++|++|++++|+ ++.++.
T Consensus 1 ~~L~~L~l~-------~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-------NNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-------SSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-------CCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468888888 88888888778888888888888888 776654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=3.9e-06 Score=74.37 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=39.3
Q ss_pred ccCCCCCCccEEEEeecCCccCCCc-hhHHhhhhcccceeccCccCCCcCCC-------CCCCCccceeecc
Q 010462 328 EALGPPPNLKKLRIDEYRGRRNVVP-ISWFMSLTNLRFLFLFGWRNCEHLPP-------LGKLPSLEYLEIE 391 (510)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~p-~~~~~~l~~L~~L~L~~~~~~~~l~~-------~~~l~~L~~L~L~ 391 (510)
.+..+++.+.-|+|..+++.. .. .+.+..|+.|..|.++++..+..+.. ++.+++++.|+=+
T Consensus 218 k~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 344556666677777666432 11 13344788888888888877664432 5677888877654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=5e-06 Score=85.79 Aligned_cols=130 Identities=28% Similarity=0.334 Sum_probs=92.4
Q ss_pred CceeEEEEEeecCCC--ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 82 TKILHLMLTLHRGAS--VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
.++++|++.+...-. .+..+. ..+|.|++|.+.+-.+ ..+.+.....++++|+.||++ ++.+..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig---~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS-------~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG---TMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDIS-------GTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh---hhCcccceEEecCcee--cchhHHHHhhccCccceeecC-------CCCccCc-
Confidence 678888887754321 222222 3789999999998652 112245557889999999999 8888888
Q ss_pred ccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCchhh-------hccccCceeecCCCcc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPRGI-------GKLRKLMYLHNEGTDS 226 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~~~-------~~l~~L~~L~l~~~~~ 226 (510)
.+++++++|+.|.+++-. +..-. ..+.+|++|++||+|...... .+..+ ..||+|+.||.+++..
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 778999999999998866 44322 347889999999999876332 22211 2488999999998744
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=1.8e-06 Score=67.39 Aligned_cols=84 Identities=29% Similarity=0.333 Sum_probs=52.4
Q ss_pred hhcCCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGI 210 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~ 210 (510)
+....+|...+|+ +|.+.++|+.|.. .+.++.|++++|. +.++|.++..++.|+.|+++.|+ +...|..+
T Consensus 49 l~~~~el~~i~ls-------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLS-------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEecc-------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 4455566666666 6666666655543 3466666666666 66666666666666666666666 55566666
Q ss_pred hccccCceeecCCC
Q 010462 211 GKLRKLMYLHNEGT 224 (510)
Q Consensus 211 ~~l~~L~~L~l~~~ 224 (510)
..|.+|..|+..+|
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 66666666666555
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.5e-05 Score=74.35 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=44.7
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 209 (510)
+..+++++.|+++ +|.+..+|. + ..+|+.|.+++|..++.+|..+. ++|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is-------~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIK-------DCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeC-------CCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 4556778888888 777777772 1 23577888877766777776443 47777777777556666653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=2.8e-06 Score=66.36 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
...+|+..++++|. +....+.+-..++.+..|+++ +|.+.++|..+..++.|+.|+++.|. +...|..+
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~-------~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLA-------NNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcc-------hhhhhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 66788889999998 555344544667799999999 99999999999999999999999999 88889888
Q ss_pred hcccccceeccCCCCccccCchhh
Q 010462 187 CELYNLERLNVDHCKNLRELPRGI 210 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~ 210 (510)
..|.+|-.|+..++. ...+|..+
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHHH
Confidence 889999999998887 77777664
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=5.3e-07 Score=89.08 Aligned_cols=83 Identities=27% Similarity=0.259 Sum_probs=34.6
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
++.-++.|+.|+|+.|+ +.... .+..|++|++|||+.|. +..+|.- ...+ +|+.|.+++|. ++.+ .++.+|++
T Consensus 182 SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhh-hhHHhhhh
Confidence 33334444555555544 33333 24444455555555444 4444431 1111 24444444442 1222 23444444
Q ss_pred ccccCcEEEe
Q 010462 240 LRSVRKFVVG 249 (510)
Q Consensus 240 L~~L~l~~~~ 249 (510)
|+.|+++++-
T Consensus 256 L~~LDlsyNl 265 (1096)
T KOG1859|consen 256 LYGLDLSYNL 265 (1096)
T ss_pred hhccchhHhh
Confidence 4445444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=7.7e-06 Score=84.46 Aligned_cols=135 Identities=19% Similarity=0.095 Sum_probs=68.9
Q ss_pred CccceEeccCCCCccc-cchhhh-cccccceeccCCCCcc-ccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 166 LHLKYLSLFGQKKIEK-LPETLC-ELYNLERLNVDHCKNL-RELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~-lp~~~~-~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+|++|+++|...+.. -|..++ .||.|+.|.+++-... +++-.-..++++|..||++++. +..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4566666655432211 122233 2566666666553211 1122223455666666666652 2333 45666666666
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCCh--hhhhHhhccCCCCCCeEEEEecC
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA--GEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
|.+....... ...+..+-+|++|+.|+|+.-...... .....+.-..+++|+.|+.++..
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6665555443 345556666777777777653332221 22233344456777777777654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=5.3e-06 Score=73.55 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=108.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccc-cccCccceEeccCCCC-ccccch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKK-IEKLPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~-~~~lp~ 184 (510)
.+.+++.+++.+|.++...+ +...+.++|+|++|+++ .|.+...-++. ..+.+|+.|-|.++.. .+....
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls-------~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLS-------CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeecc-------CCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 77889999999998666655 45567899999999998 66643221222 3567899999988762 122344
Q ss_pred hhhcccccceeccCCCCccccC----------ch---hhhc-----------------cccCceeecCCCcccc-ccccc
Q 010462 185 TLCELYNLERLNVDHCKNLREL----------PR---GIGK-----------------LRKLMYLHNEGTDSLR-YLPAG 233 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~l----------p~---~~~~-----------------l~~L~~L~l~~~~~~~-~~p~~ 233 (510)
.+..++.++.|.++.|. ...+ .. .+.. .+++..+.+..|..-. .--.+
T Consensus 141 ~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence 56677778888777763 1111 00 0111 2333434443332111 11123
Q ss_pred ccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCCh--hhhhHhhccCCCCCCeEEEE
Q 010462 234 IGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA--GEARRAELEKKKSLLKLGLH 301 (510)
Q Consensus 234 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~ 301 (510)
...++.+..|++..+.+.. ++.+..+..+++|+.+.+..++-.... .+.....++.+++++.|.-+
T Consensus 220 se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4456667777777776665 777788888888888777764332221 12222334556666665443
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=9.8e-07 Score=87.25 Aligned_cols=125 Identities=21% Similarity=0.241 Sum_probs=96.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++..++..+|........+. -++.|++|+|+.|++ .. .. ++..|++|+.|||+ .|.+..+|.-
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk~---~~-v~-~Lr~l~~LkhLDls-------yN~L~~vp~l 227 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNKF---TK-VD-NLRRLPKLKHLDLS-------YNCLRHVPQL 227 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhhh---hh-hH-HHHhcccccccccc-------cchhcccccc
Confidence 667777777777665555555 789999999999983 33 22 48899999999999 8888888753
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~ 225 (510)
-..-.+|+.|++++|. ++.+-. +.+|++|+.||++.|- +...- .-++.|..|+.|+|.+|.
T Consensus 228 ~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGCKLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhhhheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2223459999999998 888776 8899999999999986 33211 226778899999999984
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=3.6e-05 Score=73.23 Aligned_cols=84 Identities=20% Similarity=0.386 Sum_probs=58.0
Q ss_pred cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccccccccccCccceEeccCCCCccccch
Q 010462 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
..+.+++.|++++|. +.. +|. + -.+|+.|.++ ++. +..+|+.+ ..+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~---L~s-LP~-L--P~sLtsL~Ls-------nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCD---IES-LPV-L--PNELTEITIE-------NCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCC---Ccc-cCC-C--CCCCcEEEcc-------CCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 368999999999996 444 342 1 2369999998 544 66777655 36899999999955888886
Q ss_pred hhhcccccceeccCCCC--ccccCchhhh
Q 010462 185 TLCELYNLERLNVDHCK--NLRELPRGIG 211 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~--~~~~lp~~~~ 211 (510)
. |+.|++..+. .+..+|.++.
T Consensus 113 s------Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 113 S------VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred c------cceEEeCCCCCcccccCcchHh
Confidence 4 5555665433 3556666543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.57 E-value=0.0001 Score=64.82 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=60.7
Q ss_pred hhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCccc----cc-------hhhhccccccee
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIEK----LP-------ETLCELYNLERL 195 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp-------~~~~~l~~L~~L 195 (510)
+..+..+..++|| +|.++. +...|.+-.+|+..+++.-. .+. +| ..+-+|++|+..
T Consensus 26 l~~~d~~~evdLS-------GNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 26 LEMMDELVEVDLS-------GNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred HHhhcceeEEecc-------CCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 5668899999999 887654 44556667888888887643 222 33 335678889999
Q ss_pred ccCCCCccccCchh----hhccccCceeecCCCc
Q 010462 196 NVDHCKNLRELPRG----IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 196 ~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 225 (510)
+|++|.+-...|.. +++-+.|.+|.+++|.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 99888755555543 5567788888888873
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00014 Score=61.17 Aligned_cols=83 Identities=27% Similarity=0.283 Sum_probs=38.9
Q ss_pred hhcCCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCch
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPR 208 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~ 208 (510)
|..++.|..|.+. +|.|..+...+.. +++|..|.+.+|. +..+.+ .+..+++|++|.+-+|. ++..+.
T Consensus 60 lp~l~rL~tLll~-------nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLN-------NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred CCCccccceEEec-------CCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCc-hhcccC
Confidence 4455555555555 5555555333333 4445555555554 443322 13344555555555544 322221
Q ss_pred ----hhhccccCceeecCC
Q 010462 209 ----GIGKLRKLMYLHNEG 223 (510)
Q Consensus 209 ----~~~~l~~L~~L~l~~ 223 (510)
.+.++++|+.||..+
T Consensus 131 YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeEEEEecCcceEeehhh
Confidence 134455555555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00011 Score=61.73 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=21.4
Q ss_pred ccccccccccccccCccceEeccCCCCccccchhhhc-ccccceeccCCCC
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCK 201 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~L~~~~ 201 (510)
+|.+..++ .+..++.|.+|.+.+|. +..+...+.. +++|+.|.|.+|+
T Consensus 51 dNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 51 DNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 44444432 23444555555555555 4443332322 3445555555544
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=4.8e-05 Score=77.15 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred CcccceeeeccCcccccCCc-ccC-CCCCCcEEEEcCCcchHHHhh
Q 010462 448 MPRLSSLTIWSCRKLKALPD-HLL-QKTTLQKLHIRRCPILEERCR 491 (510)
Q Consensus 448 l~~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~c~~l~~~~~ 491 (510)
...++.|.+..|...+.--. ... .+..++.+++.+|+.+.....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 34489999999976543211 111 167889999999988777654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=6.1e-05 Score=66.33 Aligned_cols=100 Identities=26% Similarity=0.276 Sum_probs=72.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch--
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-- 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-- 184 (510)
.+.+.+.|++-|+. +.++ .....|+.|+||.|+ -|.|..+ ..+..|.+|+.|.|+.|. +..+-+
T Consensus 17 dl~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLS-------vNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLS-------VNKISSL-APLQRCTRLKELYLRKNC-IESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCC---ccHH--HHHHhcccceeEEee-------ccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 45566777888876 4331 226788999999999 8888887 347788999999999888 777654
Q ss_pred hhhcccccceeccCCCCccccCchh-----hhccccCceee
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-----IGKLRKLMYLH 220 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-----~~~l~~L~~L~ 220 (510)
-+.++++|++|-|..|+....-+.. +..|++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2567888888888887755544332 55677777776
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=0.0001 Score=74.79 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=55.5
Q ss_pred ccccceeccCCCCcccc--CchhhhccccCceeecCCC-ccccccc----ccccCcccccccCcEEEeCccCCccCcccc
Q 010462 189 LYNLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGT-DSLRYLP----AGIGELIRLRSVRKFVVGGGYDRACSLGSL 261 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 261 (510)
+++|+.|.+..|..+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++..+...+ ...+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--d~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--DIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--chhHHHH
Confidence 45566666665554443 2233445566666666552 1111111 122334556666665555322 2233333
Q ss_pred cc-cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 262 KK-LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 262 ~~-l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.. +++|+.+.+..+..+++ .........++.|++|+++++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCc
Confidence 22 45666666555544332 3444455567778888888775
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00043 Score=60.79 Aligned_cols=83 Identities=25% Similarity=0.225 Sum_probs=39.3
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCC--CCccccchhhhcccccceeccCCCCcccc---C
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQ--KKIEKLPETLCELYNLERLNVDHCKNLRE---L 206 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~~~~~---l 206 (510)
...+..|+.|++. +..+..+ ..+-.+++|++|.++.| .....++....++++|++|++++|+ +.. +
T Consensus 39 ~d~~~~le~ls~~-------n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl 109 (260)
T KOG2739|consen 39 TDEFVELELLSVI-------NVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTL 109 (260)
T ss_pred cccccchhhhhhh-------ccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccccccc
Confidence 3344445555554 4443333 12334556666666655 3233344434445666666666655 221 1
Q ss_pred chhhhccccCceeecCCC
Q 010462 207 PRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 207 p~~~~~l~~L~~L~l~~~ 224 (510)
+. +.++.+|..|++.+|
T Consensus 110 ~p-l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 110 RP-LKELENLKSLDLFNC 126 (260)
T ss_pred ch-hhhhcchhhhhcccC
Confidence 11 334455555555555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00022 Score=62.95 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=69.8
Q ss_pred cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch--hhh
Q 010462 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR--GIG 211 (510)
Q Consensus 134 ~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~~ 211 (510)
.+.+.+.|++. ++.+.++. -..+++.|++|.|+-|. ++.+.. +..|++|+.|.|+.|. +..+.. .+.
T Consensus 17 dl~~vkKLNcw-------g~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCW-------GCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHHhhhhccc-------CCCccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 35567778887 88777763 34568899999999988 877766 8889999999998887 555432 356
Q ss_pred ccccCceeecCCCcccccccc-----cccCcccccccC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPA-----GIGELIRLRSVR 244 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~-----~l~~l~~L~~L~ 244 (510)
++++|+.|.|..|.....-+. .+.-|++|+.|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 788888888887754433321 234455555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0012 Score=58.14 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=57.0
Q ss_pred ccccccccCccceEeccCCCCccccchhhhcccccceeccCCC--CccccCchhhhccccCceeecCCCccccccccc--
Q 010462 158 IPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHC--KNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-- 233 (510)
Q Consensus 158 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-- 233 (510)
+....-.+..|+.|.+.++. ++.+-. +..|++|+.|.++.| +....++.-..++++|++|++++|.. .. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccc
Confidence 33333446677888887777 555444 667889999999998 54455666566779999999999853 21 222
Q ss_pred -ccCcccccccCcEEEe
Q 010462 234 -IGELIRLRSVRKFVVG 249 (510)
Q Consensus 234 -l~~l~~L~~L~l~~~~ 249 (510)
+..+.+|..|.++.|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 3444555555555443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0029 Score=32.90 Aligned_cols=17 Identities=35% Similarity=0.817 Sum_probs=7.0
Q ss_pred cceEeccCCCCccccchh
Q 010462 168 LKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 168 L~~L~l~~~~~~~~lp~~ 185 (510)
|++|++++|. ++.+|.+
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 3444444443 3344433
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.027 Score=45.34 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=51.2
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
|.++++|+.+.+... ...+-..+|..+..|+.+.+. ++ +..++ ..+.++..|+.+.+.. . +..++
T Consensus 8 F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~-------~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINFP-------NN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETST------EE-TTTTTT-TT-SEEEES-------ST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECCC----eeEeChhhccccccccccccc-------cc-ccccceeeeecccccccccccc-c-ccccc
Confidence 347777888877643 444455567778778888876 53 55554 3455666788888865 3 44444
Q ss_pred h-hhhcccccceeccCCCCccccCch-hhhccccCceeecCC
Q 010462 184 E-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEG 223 (510)
Q Consensus 184 ~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~ 223 (510)
. .+..+++|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 3 4555778888877553 333333 24444 777776654
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0018 Score=54.64 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=30.9
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeccCcccccC-CcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL-PDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~ 484 (510)
.+++++.|.+.+|..+..+.+.... +..|+|+.|+|++|+.+++- -..+..+++|+.|++++-|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3444555555555555544443322 13455666666666555432 1133445555555555544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0016 Score=55.05 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=50.0
Q ss_pred ccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC--CC-CCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 336 LKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP--PL-GKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 336 L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~--~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
++.++-+++.+.. ...+.+..++.++.|.+.+|....+.- .+ +-.++|+.|+|++|+.+++-+-..
T Consensus 103 IeaVDAsds~I~~--eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--------- 171 (221)
T KOG3864|consen 103 IEAVDASDSSIMY--EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--------- 171 (221)
T ss_pred EEEEecCCchHHH--HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---------
Confidence 4455555554443 222334466677777777776655421 22 245788888888887666543221
Q ss_pred Cccccccccccccccccccccc
Q 010462 413 SSVIAFPKLKHLTFWVMNALEE 434 (510)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~L~~ 434 (510)
+..|++|+.|.+.+++....
T Consensus 172 --L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 172 --LLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred --HHHhhhhHHHHhcCchhhhc
Confidence 34677888888777665443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.013 Score=30.48 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=16.4
Q ss_pred ceeEEEecccccccccccccccccccccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKL 165 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l 165 (510)
+|++|+++ +|.+..+|.+|++|
T Consensus 1 ~L~~Ldls-------~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLS-------GNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEET-------SSEESEEGTTTTT-
T ss_pred CccEEECC-------CCcCEeCChhhcCC
Confidence 47888888 88888888776543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.04 E-value=0.0013 Score=56.67 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=32.4
Q ss_pred ccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
.+....+-..++-+..|..|+++.+. +..+|..++.+..++.+++..|. ....|..++++++++++++.++
T Consensus 51 s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 51 SNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccC
Confidence 44433333334444444444444444 44444444444444444444443 4444444444444444444444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.74 E-value=0.001 Score=57.24 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+.+.+.|+++.|+ ... +-..|+-+..|..|+++ .+.+..+|..++.+..++.+++..|. ....|.++
T Consensus 40 ~~kr~tvld~~s~r---~vn-~~~n~s~~t~~~rl~~s-------knq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR---LVN-LGKNFSILTRLVRLDLS-------KNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhH---HHh-hccchHHHHHHHHHhcc-------HhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 78899999999997 333 33347778889999999 99999999999999999999998888 89999999
Q ss_pred hcccccceeccCCCCccc
Q 010462 187 CELYNLERLNVDHCKNLR 204 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~ 204 (510)
+.+++++.+++..+.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 999999999999987443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.91 E-value=0.039 Score=26.51 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.3
Q ss_pred cceEeccCCC
Q 010462 168 LKYLSLFGQK 177 (510)
Q Consensus 168 L~~L~l~~~~ 177 (510)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.63 E-value=0.34 Score=38.74 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=50.7
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
|..+++|+.+.+..+ +..+-..+|..++.|+.+.+. + .+..++ ..+..+.+|+.+.+..+ +..++
T Consensus 31 F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~-------~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~ 96 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFP-------N-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIG 96 (129)
T ss_dssp TTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEET-------S-TT-EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred ccccccccccccccc----ccccceeeeeccccccccccc-------c-cccccccccccccccccccccCcc--ccEEc
Confidence 348889999999875 444455668889889999997 5 455554 45666899999999764 55555
Q ss_pred h-hhhcccccceeccCCCCccccCch-hhhccccC
Q 010462 184 E-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKL 216 (510)
Q Consensus 184 ~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L 216 (510)
. .+.+. +|+.+.+..+ +..++. .+.++++|
T Consensus 97 ~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 97 SSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred hhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 4 46666 8888888753 344443 34444444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.43 E-value=0.29 Score=26.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=7.2
Q ss_pred ccceeccCCCCccccCch
Q 010462 191 NLERLNVDHCKNLRELPR 208 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp~ 208 (510)
+|+.|+|++|. +..+|.
T Consensus 3 ~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCEEECCCCc-CCcCCH
Confidence 34444444443 444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.43 E-value=0.29 Score=26.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=7.2
Q ss_pred ccceeccCCCCccccCch
Q 010462 191 NLERLNVDHCKNLRELPR 208 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp~ 208 (510)
+|+.|+|++|. +..+|.
T Consensus 3 ~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCEEECCCCc-CCcCCH
Confidence 34444444443 444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.36 E-value=0.33 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCccceEeccCCCCccccchhh
Q 010462 165 LLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
+.+|++|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577888888887 77777653
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.36 E-value=0.33 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCccceEeccCCCCccccchhh
Q 010462 165 LLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
+.+|++|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577888888887 77777653
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.84 E-value=0.22 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=14.7
Q ss_pred CCCCcEEEEcCCcchHHHh
Q 010462 472 KTTLQKLHIRRCPILEERC 490 (510)
Q Consensus 472 l~~L~~L~l~~c~~l~~~~ 490 (510)
+++|+.|+|++|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4678888888888887764
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.16 E-value=0.029 Score=55.86 Aligned_cols=81 Identities=22% Similarity=0.182 Sum_probs=47.4
Q ss_pred eeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcccc-----chhhhcc-cccceeccCCCCccc--
Q 010462 138 LRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIEKL-----PETLCEL-YNLERLNVDHCKNLR-- 204 (510)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~l-----p~~~~~l-~~L~~L~L~~~~~~~-- 204 (510)
+..|.|. +|.+.. +-..+....+|..|++++|. ++.. -..+... ..|++|++..|....
T Consensus 89 l~~L~L~-------~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLA-------NNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhh-------hCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 6777777 555433 33455567788888888887 5521 1112222 456667777766322
Q ss_pred --cCchhhhccccCceeecCCCcc
Q 010462 205 --ELPRGIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 205 --~lp~~~~~l~~L~~L~l~~~~~ 226 (510)
.++..+.+...++.++++.|..
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhccc
Confidence 2344455666777777777744
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.39 E-value=0.02 Score=57.02 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=53.8
Q ss_pred ccEEEeccCCcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----cccccccc-CccceEeccCCCCccc--
Q 010462 111 LRSLLVESGEYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKL-LHLKYLSLFGQKKIEK-- 181 (510)
Q Consensus 111 L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~~-- 181 (510)
+..|.+.+|..... ...+..++.....|..|+++ .+.+.. +-..+... ..|++|++..|. ++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~-------~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS-------GNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcc-------cCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccc
Confidence 55566666653111 11134445666777777777 443321 11222222 456666666665 333
Q ss_pred ---cchhhhcccccceeccCCCCccc----cCchhhh----ccccCceeecCCCc
Q 010462 182 ---LPETLCELYNLERLNVDHCKNLR----ELPRGIG----KLRKLMYLHNEGTD 225 (510)
Q Consensus 182 ---lp~~~~~l~~L~~L~L~~~~~~~----~lp~~~~----~l~~L~~L~l~~~~ 225 (510)
+...+.....++.++++.|.... .++..+. ...++++|++.+|.
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 33445556677777777776321 1122222 35566666666663
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.43 E-value=2.4 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=9.3
Q ss_pred ccceEeccCCCCccccch
Q 010462 167 HLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~ 184 (510)
+|++|++++|+ ++.+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45555555555 555554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.63 E-value=1.1 Score=23.54 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=3.6
Q ss_pred ccceEeccCCC
Q 010462 167 HLKYLSLFGQK 177 (510)
Q Consensus 167 ~L~~L~l~~~~ 177 (510)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 33444444433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.90 E-value=7.7 Score=21.01 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=4.9
Q ss_pred ccceeccCCCC
Q 010462 191 NLERLNVDHCK 201 (510)
Q Consensus 191 ~L~~L~L~~~~ 201 (510)
+|+.|+++.|.
T Consensus 3 ~L~~L~L~~Nk 13 (26)
T smart00365 3 NLEELDLSQNK 13 (26)
T ss_pred ccCEEECCCCc
Confidence 44444444444
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.43 E-value=11 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=6.4
Q ss_pred ccceEeccCCC
Q 010462 167 HLKYLSLFGQK 177 (510)
Q Consensus 167 ~L~~L~l~~~~ 177 (510)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45566666555
No 89
>PF14162 YozD: YozD-like protein
Probab=46.23 E-value=24 Score=22.44 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhCCCCcee
Q 010462 14 MGDIGEEYFNILASRSFFQDF 34 (510)
Q Consensus 14 ~e~~~~~~~~~L~~~~ll~~~ 34 (510)
-|++|+-++.+|+.|+.+-..
T Consensus 10 TEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcH
Confidence 479999999999999998643
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.21 E-value=8.8 Score=38.35 Aligned_cols=86 Identities=22% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCCCCccEEEEeecCCccCCCch--hHHhhhhcccceeccCccCCC-cCCCCC--CCCccceeeccCccccEEeccc--c
Q 010462 331 GPPPNLKKLRIDEYRGRRNVVPI--SWFMSLTNLRFLFLFGWRNCE-HLPPLG--KLPSLEYLEIEGMKSVKRVGNE--F 403 (510)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~p~--~~~~~l~~L~~L~L~~~~~~~-~l~~~~--~l~~L~~L~L~~~~~l~~~~~~--~ 403 (510)
.+.+.+..++|++|.+.. +.. ..-...|+|+.|+|++|.... ..+++. ....|++|.+.||+-.+..... .
T Consensus 215 ~n~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhc--hhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 456788999999988765 430 223378999999999983222 222222 2356999999998854433111 0
Q ss_pred cCCCCCCCCCcccccccccccc
Q 010462 404 LGVESDTDGSSVIAFPKLKHLT 425 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~L~~L~ 425 (510)
... ....||+|..|+
T Consensus 293 v~~-------i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSA-------IRELFPKLLRLD 307 (585)
T ss_pred HHH-------HHHhcchheeec
Confidence 000 023788888886
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.29 E-value=17 Score=36.51 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=42.1
Q ss_pred hcCCceeEEEecccccccccccccccc--ccc-cccCccceEeccCCCC-ccccchhhhc--ccccceeccCCCCccccC
Q 010462 133 DKLTCLRALKLEVREQGLYTNFIKKIP--TNI-EKLLHLKYLSLFGQKK-IEKLPETLCE--LYNLERLNVDHCKNLREL 206 (510)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~lp--~~i-~~l~~L~~L~l~~~~~-~~~lp~~~~~--l~~L~~L~L~~~~~~~~l 206 (510)
.+.+.+..+.|+ +|++..+. .++ ...++|..|+|++|.. +...+ ++.+ ...|+.|-+.+|+..+.+
T Consensus 215 ~n~p~i~sl~ls-------nNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLS-------NNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecc-------cchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 345566666676 66655441 122 2367777777777721 22222 2333 345777777777744332
Q ss_pred ch---hh----hccccCceee
Q 010462 207 PR---GI----GKLRKLMYLH 220 (510)
Q Consensus 207 p~---~~----~~l~~L~~L~ 220 (510)
-. .+ ...|+|..||
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 11 11 1456666665
No 92
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=24.74 E-value=1.2e+02 Score=20.54 Aligned_cols=29 Identities=3% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCceeecCCCCcEeeEEe
Q 010462 19 EEYFNILASRSFFQDFYKGYGGEIYKCKM 47 (510)
Q Consensus 19 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~m 47 (510)
...+++|+++++++......+++.+.+..
T Consensus 36 s~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 36 SRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 47799999999999888877887665553
Done!