Query 010462
Match_columns 510
No_of_seqs 384 out of 3473
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 07:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-33 6.8E-38 298.0 14.6 388 82-508 269-766 (768)
2 4eco_A Uncharacterized protein 100.0 4E-31 1.4E-35 274.0 13.1 346 82-485 206-599 (636)
3 4eco_A Uncharacterized protein 100.0 2E-30 6.8E-35 268.8 16.6 320 128-485 198-578 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.7E-30 5.9E-35 273.8 15.2 348 82-485 448-839 (876)
5 3rgz_A Protein brassinosteroid 100.0 8.9E-31 3E-35 277.7 12.8 346 82-485 178-550 (768)
6 4ecn_A Leucine-rich repeat pro 100.0 9.9E-30 3.4E-34 268.0 16.0 319 128-485 440-818 (876)
7 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-29 2.7E-33 252.0 20.9 338 82-485 21-480 (520)
8 4fmz_A Internalin; leucine ric 100.0 4E-29 1.4E-33 240.5 17.1 303 107-484 42-344 (347)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7E-29 2.4E-33 257.2 20.1 145 82-241 32-180 (606)
10 3t6q_A CD180 antigen; protein- 100.0 6.5E-29 2.2E-33 257.5 19.6 151 82-249 33-190 (606)
11 3v47_A TOLL-like receptor 5B a 100.0 2.4E-29 8.1E-34 251.5 15.0 364 82-485 30-407 (455)
12 2z81_A CD282 antigen, TOLL-lik 100.0 9.9E-29 3.4E-33 253.1 17.4 360 82-485 26-509 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-28 3.8E-33 253.9 17.6 144 82-240 28-175 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-28 5.4E-33 258.0 18.5 156 82-251 25-184 (680)
15 2id5_A Lingo-1, leucine rich r 100.0 5.6E-28 1.9E-32 242.9 20.0 316 86-462 15-333 (477)
16 3t6q_A CD180 antigen; protein- 100.0 4.7E-28 1.6E-32 251.1 18.9 260 186-486 274-560 (606)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4.2E-32 245.2 21.7 338 82-486 52-510 (562)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-28 9.7E-33 247.8 16.7 144 85-250 3-150 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-27 1.1E-31 253.1 24.7 279 81-394 23-373 (844)
20 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-28 2E-32 250.3 17.9 358 85-484 14-435 (606)
21 1o6v_A Internalin A; bacterial 100.0 1.6E-27 5.4E-32 238.5 19.5 326 82-485 46-387 (466)
22 3o6n_A APL1; leucine-rich repe 100.0 1.5E-27 5.3E-32 233.1 17.8 308 107-488 43-354 (390)
23 3v47_A TOLL-like receptor 5B a 99.9 1.9E-27 6.4E-32 237.7 16.6 333 82-466 54-412 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-27 1.1E-31 242.2 17.0 353 83-484 32-484 (562)
25 3oja_B Anopheles plasmodium-re 99.9 6.2E-27 2.1E-31 241.3 16.6 308 107-488 49-360 (597)
26 4fmz_A Internalin; leucine ric 99.9 1.1E-26 3.7E-31 223.5 16.7 302 82-461 44-345 (347)
27 2z63_A TOLL-like receptor 4, v 99.9 2.3E-27 8E-32 244.1 12.8 148 86-251 11-162 (570)
28 2z81_A CD282 antigen, TOLL-lik 99.9 7.5E-27 2.6E-31 239.1 14.0 349 88-483 11-441 (549)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-26 4.8E-31 248.0 16.3 349 85-483 7-391 (844)
30 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-26 1.6E-30 226.0 18.5 255 82-400 42-303 (457)
31 1ziw_A TOLL-like receptor 3; i 99.9 5.4E-26 1.8E-30 238.7 19.1 269 85-394 7-283 (680)
32 1o6v_A Internalin A; bacterial 99.9 5E-26 1.7E-30 227.6 17.9 311 107-484 44-364 (466)
33 2id5_A Lingo-1, leucine rich r 99.9 5.4E-26 1.9E-30 228.4 14.6 297 82-430 32-331 (477)
34 3o6n_A APL1; leucine-rich repe 99.9 7.7E-26 2.6E-30 221.1 14.5 305 82-462 45-352 (390)
35 4g8a_A TOLL-like receptor 4; l 99.9 5.7E-25 2E-29 229.3 19.0 371 81-486 51-580 (635)
36 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.5E-30 229.7 13.1 305 82-462 51-358 (597)
37 4fcg_A Uncharacterized protein 99.9 1.1E-24 3.7E-29 207.0 16.8 232 134-483 79-311 (328)
38 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-25 2.2E-29 217.8 15.5 299 107-484 40-350 (457)
39 1ogq_A PGIP-2, polygalacturona 99.9 8.9E-25 3.1E-29 206.3 13.5 248 82-395 50-303 (313)
40 1xku_A Decorin; proteoglycan, 99.9 3E-24 1E-28 204.8 15.8 243 83-400 32-279 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-24 8.5E-29 205.5 14.9 236 84-394 35-275 (332)
42 4g8a_A TOLL-like receptor 4; l 99.9 3E-24 1E-28 223.9 15.0 146 88-251 37-186 (635)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-24 5.6E-29 204.5 10.0 224 109-394 50-279 (313)
44 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 204.9 10.4 222 107-392 79-310 (328)
45 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-24 1.9E-28 203.1 12.8 291 110-484 34-331 (332)
46 1xku_A Decorin; proteoglycan, 99.9 1.2E-23 4.2E-28 200.5 13.1 292 110-483 32-329 (330)
47 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-25 4.7E-30 224.6 -4.9 366 82-484 3-409 (461)
48 2z80_A TOLL-like receptor 2, v 99.9 1.8E-22 6.3E-27 194.2 15.7 254 137-485 53-313 (353)
49 1jl5_A Outer protein YOPM; leu 99.9 2.7E-22 9.1E-27 198.8 17.0 302 82-484 91-407 (454)
50 1jl5_A Outer protein YOPM; leu 99.9 5E-23 1.7E-27 204.0 11.5 326 82-485 11-369 (454)
51 2z66_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 190.9 10.1 241 87-394 12-259 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4.2E-26 188.5 15.5 267 87-394 36-312 (353)
53 1ozn_A Reticulon 4 receptor; N 99.9 8.7E-22 3E-26 183.6 10.9 148 85-248 14-163 (285)
54 3ogk_B Coronatine-insensitive 99.9 3.1E-23 1.1E-27 214.3 1.1 174 111-301 140-326 (592)
55 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-21 2.1E-25 194.8 16.3 262 82-466 40-301 (622)
56 3zyi_A Leucine-rich repeat-con 99.8 3.4E-21 1.2E-25 191.8 11.8 241 84-394 56-301 (452)
57 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-23 4.3E-28 210.4 -5.9 368 82-484 28-438 (461)
58 3ogk_B Coronatine-insensitive 99.8 9.8E-23 3.4E-27 210.5 0.6 353 84-484 140-524 (592)
59 3zyi_A Leucine-rich repeat-con 99.8 1.9E-20 6.7E-25 186.3 16.7 109 356-484 192-301 (452)
60 3zyj_A Leucine-rich repeat-con 99.8 2.3E-20 7.8E-25 185.1 17.0 80 136-224 64-146 (440)
61 3zyj_A Leucine-rich repeat-con 99.8 3.7E-21 1.3E-25 190.8 11.2 241 84-394 45-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1E-21 3.4E-26 185.9 5.6 215 107-394 32-248 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-22 1.3E-26 188.8 1.4 287 111-487 12-300 (317)
64 2z66_A Variable lymphocyte rec 99.8 1.4E-20 4.9E-25 177.3 12.0 231 82-348 28-262 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.8 5.5E-20 1.9E-24 187.8 16.0 257 109-485 40-296 (622)
66 1wwl_A Monocyte differentiatio 99.8 6.4E-21 2.2E-25 180.0 4.7 201 107-394 41-264 (312)
67 2p1m_B Transport inhibitor res 99.8 1.7E-21 5.7E-26 201.4 0.4 366 82-485 105-518 (594)
68 1wwl_A Monocyte differentiatio 99.8 4.1E-21 1.4E-25 181.3 1.4 244 84-394 45-307 (312)
69 3oja_A Leucine-rich immune mol 99.8 2.7E-20 9.2E-25 186.3 5.7 234 137-457 35-270 (487)
70 1ozn_A Reticulon 4 receptor; N 99.8 3.6E-19 1.2E-23 165.8 12.0 152 82-249 32-188 (285)
71 3oja_A Leucine-rich immune mol 99.8 2.5E-19 8.4E-24 179.3 10.2 239 107-429 32-272 (487)
72 2p1m_B Transport inhibitor res 99.8 5.3E-21 1.8E-25 197.6 -3.1 254 82-369 66-347 (594)
73 1h6u_A Internalin H; cell adhe 99.8 2.9E-18 1E-22 161.2 12.0 194 107-399 39-232 (308)
74 2z62_A TOLL-like receptor 4, v 99.8 2.4E-18 8.2E-23 159.4 11.2 130 109-250 28-161 (276)
75 2ast_B S-phase kinase-associat 99.8 1.9E-19 6.6E-24 172.0 3.6 255 109-470 47-314 (336)
76 1p9a_G Platelet glycoprotein I 99.7 9.8E-18 3.3E-22 156.0 11.7 197 107-394 8-206 (290)
77 3rfs_A Internalin B, repeat mo 99.7 3E-17 1E-21 151.5 12.4 61 332-394 155-216 (272)
78 2o6q_A Variable lymphocyte rec 99.7 2.5E-17 8.6E-22 151.9 11.7 196 110-394 17-216 (270)
79 4glp_A Monocyte differentiatio 99.7 1.8E-17 6.3E-22 156.1 11.0 229 107-394 62-305 (310)
80 1p9a_G Platelet glycoprotein I 99.7 3.4E-17 1.2E-21 152.3 11.7 147 82-248 10-158 (290)
81 2xwt_C Thyrotropin receptor; s 99.7 2.3E-17 7.7E-22 149.3 10.1 103 109-224 31-140 (239)
82 2ast_B S-phase kinase-associat 99.7 3.2E-18 1.1E-22 163.5 4.0 252 83-378 48-311 (336)
83 2ca6_A RAN GTPase-activating p 99.7 9.3E-19 3.2E-23 170.5 0.3 113 106-226 29-171 (386)
84 3rfs_A Internalin B, repeat mo 99.7 2.8E-17 9.5E-22 151.7 9.9 125 107-246 39-165 (272)
85 2ca6_A RAN GTPase-activating p 99.7 2.6E-18 8.8E-23 167.4 3.0 245 128-394 24-314 (386)
86 2z62_A TOLL-like receptor 4, v 99.7 4.7E-17 1.6E-21 150.7 10.2 199 82-304 28-235 (276)
87 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 147.8 11.7 195 84-304 18-216 (270)
88 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 147.5 8.4 62 330-394 151-216 (239)
89 1h6u_A Internalin H; cell adhe 99.7 3.9E-16 1.3E-20 146.6 15.0 188 82-304 41-228 (308)
90 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.7E-21 152.2 10.6 99 335-458 155-255 (350)
91 3goz_A Leucine-rich repeat-con 99.7 2.7E-17 9.1E-22 158.5 3.3 105 109-225 22-149 (362)
92 4ay9_X Follicle-stimulating ho 99.6 6.8E-16 2.3E-20 147.9 12.8 238 139-482 12-255 (350)
93 3goz_A Leucine-rich repeat-con 99.6 8.9E-17 3E-21 154.9 4.7 254 115-394 4-295 (362)
94 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 143.9 10.4 202 107-372 89-306 (310)
95 3m19_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 136.8 11.2 148 84-250 16-167 (251)
96 4ezg_A Putative uncharacterize 99.6 5.8E-15 2E-19 129.0 12.8 149 82-250 44-193 (197)
97 3m19_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 135.0 12.7 155 82-251 35-192 (251)
98 1m9s_A Internalin B; cell inva 99.6 2.8E-15 9.6E-20 152.9 10.2 173 132-374 39-211 (605)
99 1h6t_A Internalin B; cell adhe 99.6 9.6E-15 3.3E-19 135.9 11.8 141 82-246 46-186 (291)
100 4ezg_A Putative uncharacterize 99.6 3.6E-15 1.2E-19 130.3 8.0 131 107-251 42-172 (197)
101 2v9t_B SLIT homolog 2 protein 99.6 9E-15 3.1E-19 130.0 9.5 145 87-248 16-162 (220)
102 1xeu_A Internalin C; cellular 99.5 4.2E-15 1.4E-19 136.0 6.9 166 135-394 18-183 (263)
103 3e6j_A Variable lymphocyte rec 99.5 1.5E-14 5.1E-19 129.5 9.9 145 86-249 23-170 (229)
104 1h6t_A Internalin B; cell adhe 99.5 1E-13 3.4E-18 128.9 15.2 147 82-252 68-214 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.5 2.5E-14 8.4E-19 127.2 10.5 148 86-250 15-165 (220)
106 1xeu_A Internalin C; cellular 99.5 7.6E-14 2.6E-18 127.6 12.9 146 82-252 41-186 (263)
107 2ell_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 120.3 9.7 131 107-251 22-160 (168)
108 1m9s_A Internalin B; cell inva 99.5 3.3E-14 1.1E-18 145.0 10.5 164 82-274 43-206 (605)
109 3cvr_A Invasion plasmid antige 99.5 4.4E-14 1.5E-18 142.5 10.1 131 83-248 60-190 (571)
110 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 121.7 11.4 147 82-250 28-177 (208)
111 2ell_A Acidic leucine-rich nuc 99.5 5.3E-14 1.8E-18 119.5 8.5 132 82-232 24-164 (168)
112 3cvr_A Invasion plasmid antige 99.5 3.2E-14 1.1E-18 143.5 8.1 71 137-224 60-130 (571)
113 2je0_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 117.5 7.0 125 107-245 15-147 (149)
114 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 121.1 10.7 146 86-249 11-159 (208)
115 3e6j_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 119.7 13.5 130 82-227 40-172 (229)
116 1dce_A Protein (RAB geranylger 99.5 1.5E-15 5.2E-20 153.9 -3.2 193 133-389 346-566 (567)
117 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.8E-18 117.8 8.9 129 107-250 17-152 (176)
118 2v9t_B SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 119.2 12.2 130 82-226 32-164 (220)
119 2xot_A Amphoterin-induced prot 99.4 1.3E-13 4.6E-18 132.4 8.9 147 86-250 22-175 (361)
120 2je0_A Acidic leucine-rich nuc 99.4 2E-13 6.9E-18 113.3 8.7 124 82-223 17-149 (149)
121 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.4E-18 144.3 9.1 156 82-251 173-329 (727)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 5.7E-13 1.9E-17 118.4 12.1 133 82-227 32-166 (220)
123 2xot_A Amphoterin-induced prot 99.4 4.3E-13 1.5E-17 128.9 9.3 151 82-248 39-199 (361)
124 4b8c_D Glucose-repressible alc 99.4 9.2E-14 3.1E-18 145.4 4.0 119 105-236 220-338 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.4 7.1E-13 2.4E-17 113.4 7.9 126 82-226 19-152 (176)
126 1w8a_A SLIT protein; signaling 99.4 1.6E-12 5.6E-17 112.7 9.2 126 85-227 11-139 (192)
127 2wfh_A SLIT homolog 2 protein 99.3 3.5E-12 1.2E-16 110.6 10.2 122 86-226 14-138 (193)
128 1dce_A Protein (RAB geranylger 99.3 2.8E-12 9.6E-17 130.0 10.4 156 105-271 405-566 (567)
129 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4E-16 117.3 13.5 290 107-480 23-328 (329)
130 1w8a_A SLIT protein; signaling 99.3 2.1E-12 7.3E-17 112.0 7.4 126 112-251 11-139 (192)
131 1ds9_A Outer arm dynein; leuci 99.3 8.2E-14 2.8E-18 121.8 -2.1 110 107-231 46-157 (198)
132 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 105.6 10.1 125 85-227 10-137 (177)
133 2wfh_A SLIT homolog 2 protein 99.3 7.6E-12 2.6E-16 108.5 8.5 123 112-250 13-138 (193)
134 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 124.4 -7.0 111 128-250 40-152 (198)
135 3sb4_A Hypothetical leucine ri 99.2 1.8E-11 6.2E-16 116.0 8.0 266 135-483 24-307 (329)
136 2o6r_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 99.3 8.7 125 111-251 9-137 (177)
137 2r9u_A Variable lymphocyte rec 99.1 7.3E-11 2.5E-15 100.3 6.9 99 112-225 15-116 (174)
138 2r9u_A Variable lymphocyte rec 99.1 1.1E-10 3.9E-15 99.1 7.9 110 85-212 15-126 (174)
139 3g39_A Variable lymphocyte rec 99.0 2.7E-10 9.4E-15 96.4 7.3 99 112-225 12-113 (170)
140 4fs7_A Uncharacterized protein 99.0 2.4E-09 8.2E-14 104.0 13.6 305 104-483 66-376 (394)
141 3g39_A Variable lymphocyte rec 99.0 5.3E-10 1.8E-14 94.6 7.4 103 137-251 10-115 (170)
142 4fdw_A Leucine rich hypothetic 99.0 2.7E-09 9.2E-14 103.3 11.1 120 107-245 111-233 (401)
143 4fdw_A Leucine rich hypothetic 98.9 1.4E-08 4.8E-13 98.3 13.4 221 104-394 131-356 (401)
144 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.8E-13 96.8 8.5 84 132-224 27-113 (347)
145 2ifg_A High affinity nerve gro 98.7 2.9E-08 1E-12 94.6 7.5 100 87-202 13-115 (347)
146 3un9_A NLR family member X1; l 98.7 2.8E-09 9.7E-14 102.1 0.5 109 108-225 71-194 (372)
147 4fs7_A Uncharacterized protein 98.6 4.2E-07 1.5E-11 88.1 13.2 289 125-482 60-352 (394)
148 3un9_A NLR family member X1; l 98.6 6.1E-09 2.1E-13 99.8 -0.5 159 82-251 72-252 (372)
149 4gt6_A Cell surface protein; l 98.5 5.9E-06 2E-10 80.0 17.7 105 105-224 59-170 (394)
150 4gt6_A Cell surface protein; l 98.4 8.4E-07 2.9E-11 86.0 10.5 302 104-482 82-387 (394)
151 2ra8_A Uncharacterized protein 98.4 8.5E-08 2.9E-12 91.0 3.3 39 332-371 277-318 (362)
152 2ra8_A Uncharacterized protein 98.3 2.2E-07 7.7E-12 88.2 2.7 135 82-226 107-264 (362)
153 1io0_A Tropomodulin; LRR prote 98.3 6.9E-07 2.3E-11 76.4 5.0 114 104-225 31-162 (185)
154 2a5y_B CED-4; apoptosis; HET: 98.2 2.8E-07 9.5E-12 93.3 1.4 60 1-64 411-473 (549)
155 3rw6_A Nuclear RNA export fact 98.2 5.1E-07 1.7E-11 81.2 2.9 60 133-201 167-231 (267)
156 1io0_A Tropomodulin; LRR prote 98.0 1.3E-06 4.5E-11 74.6 2.2 117 124-249 24-162 (185)
157 3rw6_A Nuclear RNA export fact 98.0 8.5E-06 2.9E-10 73.2 6.6 82 107-197 168-258 (267)
158 4h09_A Hypothetical leucine ri 98.0 6.4E-05 2.2E-09 72.3 12.8 78 107-199 44-122 (379)
159 3e4g_A ATP synthase subunit S, 97.9 3.5E-06 1.2E-10 70.1 1.8 18 417-434 137-154 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.3E-06 7.7E-11 71.3 0.6 69 157-226 52-126 (176)
161 4h09_A Hypothetical leucine ri 97.8 0.00024 8.4E-09 68.1 13.5 104 104-224 64-168 (379)
162 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0081 2.8E-07 50.8 4.2 110 107-224 39-167 (197)
163 3rfe_A Platelet glycoprotein I 95.0 0.03 1E-06 44.0 5.2 47 152-201 17-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.0 0.022 7.5E-07 48.2 4.4 93 124-224 29-136 (197)
165 3rfe_A Platelet glycoprotein I 92.8 0.12 4E-06 40.6 4.5 34 137-177 32-66 (130)
166 3sfz_A APAF-1, apoptotic pepti 92.6 0.1 3.5E-06 58.2 5.5 45 15-62 408-452 (1249)
167 1vt4_I APAF-1 related killer D 85.1 0.62 2.1E-05 49.8 4.1 36 16-56 402-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 84.5 1.1 3.9E-05 45.2 5.8 41 16-59 409-449 (591)
169 2lz0_A Uncharacterized protein 34.0 20 0.00069 26.0 2.0 35 106-144 17-51 (100)
170 2lz0_A Uncharacterized protein 20.8 83 0.0028 22.7 3.3 38 160-199 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-33 Score=297.97 Aligned_cols=388 Identities=19% Similarity=0.181 Sum_probs=252.2
Q ss_pred CceeEEEEEeecCC-CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGA-SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp 159 (510)
..+++|.+.++.+. ..+..+. ..+++|+.|++++|. +....|..|..+++|++|+++ +|.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~---~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-------SNNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSC---TTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-------SSEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHH---hhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-------CCcccCcCC
Confidence 55666666665544 2333333 124777777777776 444466667777888888887 77665 666
Q ss_pred cc-ccccCccceEeccCCCCccccchhhhccc-ccceeccCCCCccccCchhhhc--cccCceeecCCCccccccccccc
Q 010462 160 TN-IEKLLHLKYLSLFGQKKIEKLPETLCELY-NLERLNVDHCKNLRELPRGIGK--LRKLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 160 ~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~--l~~L~~L~l~~~~~~~~~p~~l~ 235 (510)
.. +.++++|++|++++|.+.+.+|..+..++ +|++|++++|.....+|..+.. +++|++|++++|.....+|..++
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 54 77777888888887774446777777776 7777777777755566666665 67788888887766667777788
Q ss_pred CcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccC
Q 010462 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGR 315 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 315 (510)
.+++|+.|++..+... ...+..+..+++|+.|++.+.... ...+..+..+++|+.|++++|.
T Consensus 416 ~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~----------- 477 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFND----------- 477 (768)
T ss_dssp GCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSC-----------
T ss_pred cCCCCCEEECcCCccc---CcccHHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCc-----------
Confidence 8888888887766554 334556677777777777664321 2233456677888888888876
Q ss_pred CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 316 RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|..... +| .++..+++|++|++++|...+.+|. ++.+++|+.|+|++|.
T Consensus 478 ------l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 478 ------LTGEIPSGLSNCTNLNWISLSNNRLTGE-IP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ------CCSCCCGGGGGCTTCCEEECCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ------ccCcCCHHHhcCCCCCEEEccCCccCCc-CC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 2233455677788888888888887743 77 7888888888888888877767776 7888888888888876
Q ss_pred ccEEecccccCCCCC----------------------------------------------------------CCCCccc
Q 010462 395 SVKRVGNEFLGVESD----------------------------------------------------------TDGSSVI 416 (510)
Q Consensus 395 ~l~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~ 416 (510)
....+|..++..... .....+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 333444332210000 0001123
Q ss_pred cccccccccccccc-------------c-----ccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEE
Q 010462 417 AFPKLKHLTFWVMN-------------A-----LEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKL 478 (510)
Q Consensus 417 ~~~~L~~L~l~~~~-------------~-----L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 478 (510)
.+++|+.|+++++. . |....+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 34566666665542 1 12223556788888999999999999998777899999999999999
Q ss_pred EEcCCcc-----------------------hHH----HhhccCCCCCCccCCCCccc
Q 010462 479 HIRRCPI-----------------------LEE----RCRKETGEDWPKIRHIPEIS 508 (510)
Q Consensus 479 ~l~~c~~-----------------------l~~----~~~~~~~~~~~~~~~i~~~~ 508 (510)
++++|+. +.. .|....+++|++++|+|++.
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 9988742 111 35667788999999999874
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4e-31 Score=274.00 Aligned_cols=346 Identities=13% Similarity=0.114 Sum_probs=271.5
Q ss_pred CceeEEEEEeecCCCc-------ccc-------cccccc--CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecc
Q 010462 82 TKILHLMLTLHRGASV-------PIP-------IWDNVK--GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEV 145 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-------~~~-------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 145 (510)
.+++.|++.++.+... +.. +++.+. ++++|++|++++|. ....+|..|..+++|++|+++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls- 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINVA- 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEECT-
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEECc-
Confidence 7899999999987751 000 344455 89999999999997 444478889999999999999
Q ss_pred ccccccccc-cc--ccccccccc------CccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhccc
Q 010462 146 REQGLYTNF-IK--KIPTNIEKL------LHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 146 ~~~~~~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+|. +. .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.++
T Consensus 282 ------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 282 ------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp ------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred ------CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 887 76 489888887 999999999999 779998 89999999999999999444999 899999
Q ss_pred cCceeecCCCcccccccccccCccc-ccccCcEEEeCccCCccCccccccc--ccCCCceecCcccCCChhhhhHhhcc-
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIR-LRSVRKFVVGGGYDRACSLGSLKKL--NLLRDCRIRGLGDVSDAGEARRAELE- 290 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l--~~L~~l~i~~~~~~~~~~~~~~~~l~- 290 (510)
+|++|++++|.. ..+|..++.+++ |+.|++..+.... ....+..+ ++|+.+++.+..-. ...+..+.
T Consensus 354 ~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~ 424 (636)
T 4eco_A 354 KLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSYNEIG----SVDGKNFDP 424 (636)
T ss_dssp EESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCSSCTT----TTTTCSSCT
T ss_pred CCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcCCcCC----Ccchhhhcc
Confidence 999999999954 589999999999 9999998877653 22333333 36777777763221 22223333
Q ss_pred ------CCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhc-cCCCCCCccEEEEeecCCccCCCchhHHhh-----
Q 010462 291 ------KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLE-ALGPPPNLKKLRIDEYRGRRNVVPISWFMS----- 358 (510)
Q Consensus 291 ------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~----- 358 (510)
.+++|+.|++++|... .++. .+..+++|+.|++++|.+.. +|..++..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~------------------~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~ 484 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQIS------------------KFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENF 484 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCC------------------SCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEEC
T ss_pred cccccccCCCCCEEECcCCccC------------------cCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccc
Confidence 5678999999998732 1222 23357899999999999886 77333332
Q ss_pred --hhcccceeccCccCCCcCCC-CC--CCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccc
Q 010462 359 --LTNLRFLFLFGWRNCEHLPP-LG--KLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALE 433 (510)
Q Consensus 359 --l~~L~~L~L~~~~~~~~l~~-~~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 433 (510)
+++|+.|++++|... .+|. +. .+++|+.|+|++|. ++.+|.. +..+++|+.|++++++.+.
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTT
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccc
Confidence 339999999999655 6776 55 89999999999987 4335433 3478999999999887777
Q ss_pred ccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 434 ELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 434 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
...+.+.+|..+..+++|+.|++++|.. +.+|..+. ++|+.|++++|+.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 7777788899999999999999999965 88998765 8999999999974
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2e-30 Score=268.80 Aligned_cols=320 Identities=13% Similarity=0.130 Sum_probs=231.9
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc------------------cccccc--ccCccceEeccCCCCccccchhhh
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK------------------IPTNIE--KLLHLKYLSLFGQKKIEKLPETLC 187 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~lp~~~~ 187 (510)
+|..|..+++|++|+++ +|.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls-------~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMG-------NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECc-------CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 67778899999999999 888777 899988 999999999999987788898899
Q ss_pred cccccceeccCCCC-ccc-cCchhhhcc------ccCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCccC
Q 010462 188 ELYNLERLNVDHCK-NLR-ELPRGIGKL------RKLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 188 ~l~~L~~L~L~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
++++|++|++++|. ... .+|..++++ ++|++|++++|... .+|. .++.+++|+.|++..+.... ..
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g---~i 346 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG---KL 346 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE---EC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc---ch
Confidence 99999999999997 444 688888877 89999999998554 8888 88899999999888776651 22
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCC-CCeEEEEecCCCCCCcccccCC-------C-CcchhhHhhhc
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS-LLKLGLHFGHSRDGDEERAGRR-------E-NEEDEDERLLE 328 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~ 328 (510)
. .+..+++|+.|++.+..-. ..+..+..+++ |+.|++++|.....+....... . .........+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred h-hhCCCCCCCEEECCCCccc-----cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 2 6677777777777653211 22334566666 7777777776442221100000 0 00012223344
Q ss_pred cCC-------CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CC-------CCCccceeeccC
Q 010462 329 ALG-------PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LG-------KLPSLEYLEIEG 392 (510)
Q Consensus 329 ~l~-------~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~-------~l~~L~~L~L~~ 392 (510)
.+. .+++|+.|++++|.+.. +|..++..+++|++|++++|... .+|. +. ++++|++|+|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 444 56789999999998886 77455567899999999998655 5654 22 233899999998
Q ss_pred ccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeec------cCcccccCC
Q 010462 393 MKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIW------SCRKLKALP 466 (510)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp 466 (510)
|. ++.++..+.. ..+++|+.|+++++. ++ + +|..+..+++|+.|+++ +|...+.+|
T Consensus 498 N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~-l~-----~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 498 NK-LTKLSDDFRA----------TTLPYLVGIDLSYNS-FS-----K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp SC-CCBCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred Cc-CCccChhhhh----------ccCCCcCEEECCCCC-CC-----C-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 87 5555543320 268899999988875 43 2 56667789999999995 455567789
Q ss_pred cccCCCCCCcEEEEcCCcc
Q 010462 467 DHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 467 ~~~~~l~~L~~L~l~~c~~ 485 (510)
..+..+++|+.|++++|..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCcC
Confidence 8899999999999999965
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.7e-30 Score=273.80 Aligned_cols=348 Identities=15% Similarity=0.137 Sum_probs=268.0
Q ss_pred CceeEEEEEeecCCCc-------cc-------ccccccc--CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecc
Q 010462 82 TKILHLMLTLHRGASV-------PI-------PIWDNVK--GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEV 145 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-------~~-------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 145 (510)
.+++.|.+.++.+... +. .+++.+. ++++|+.|++++|. ....+|..|..+++|++|+++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls- 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIA- 523 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECT-
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECc-
Confidence 7899999999988750 00 1333334 89999999999997 344478889999999999999
Q ss_pred ccccccccc-cc--cccccccccC-------ccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhcc
Q 010462 146 REQGLYTNF-IK--KIPTNIEKLL-------HLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKL 213 (510)
Q Consensus 146 ~~~~~~~~~-~~--~lp~~i~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 213 (510)
+|. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|. +..+| .++.+
T Consensus 524 ------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 524 ------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp ------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred ------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 886 66 4788777766 99999999999 779999 89999999999999999 66999 79999
Q ss_pred ccCceeecCCCcccccccccccCccc-ccccCcEEEeCccCCccCcccccccc--cCCCceecCcccCCChhhhhHhhcc
Q 010462 214 RKLMYLHNEGTDSLRYLPAGIGELIR-LRSVRKFVVGGGYDRACSLGSLKKLN--LLRDCRIRGLGDVSDAGEARRAELE 290 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~--~L~~l~i~~~~~~~~~~~~~~~~l~ 290 (510)
++|+.|++++|.. ..+|..+..+++ |+.|++..+.... ....+..+. +|+.|++.+..-.... ......+.
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~ 668 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY----IPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMD 668 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCS----CCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTT
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCc----CchhhhccccCCCCEEECcCCcCCCcc-ccchhhhc
Confidence 9999999999965 489999999999 9999998877653 223333333 3777777753221110 11111122
Q ss_pred --CCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC-CCCCCccEEEEeecCCccCCCchhHHh-------hhh
Q 010462 291 --KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL-GPPPNLKKLRIDEYRGRRNVVPISWFM-------SLT 360 (510)
Q Consensus 291 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~p~~~~~-------~l~ 360 (510)
..++|+.|++++|... .++..+ ..+++|+.|++++|.+.. +|...+. +++
T Consensus 669 ~~~~~~L~~L~Ls~N~L~------------------~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ------------------KFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTY 728 (876)
T ss_dssp TCCCCCEEEEECCSSCCC------------------SCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGG
T ss_pred cccCCCcCEEEccCCcCC------------------ccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccC
Confidence 3458999999998722 222222 367899999999999886 7722222 344
Q ss_pred cccceeccCccCCCcCCC-CC--CCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccc
Q 010462 361 NLRFLFLFGWRNCEHLPP-LG--KLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDF 437 (510)
Q Consensus 361 ~L~~L~L~~~~~~~~l~~-~~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 437 (510)
+|+.|+|++|... .+|. +. .+++|+.|+|++|. +..+|.. +..+++|+.|++++++.+....+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBC
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccc
Confidence 9999999999555 6775 55 89999999999987 4434432 34789999999999887777777
Q ss_pred ccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 438 ETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
.+.+|..+..+++|+.|+|++|.. +.+|..+. ++|+.|+|++|+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 788899999999999999999965 89998765 7999999999974
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.9e-31 Score=277.68 Aligned_cols=346 Identities=18% Similarity=0.106 Sum_probs=198.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-cccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp~ 160 (510)
.++++|.+.++.+..... .. .+++|++|++++|. +....|. +..+++|++|+++ +|.+. .+|.
T Consensus 178 ~~L~~L~Ls~n~l~~~~~-~~----~l~~L~~L~Ls~n~---l~~~~~~-l~~l~~L~~L~Ls-------~n~l~~~~~~ 241 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD-VS----RCVNLEFLDVSSNN---FSTGIPF-LGDCSALQHLDIS-------GNKLSGDFSR 241 (768)
T ss_dssp TTCCEEECCSSEEESCCB-CT----TCTTCCEEECCSSC---CCSCCCB-CTTCCSCCEEECC-------SSCCCSCHHH
T ss_pred CCCCEEECCCCcccccCC-cc----cCCcCCEEECcCCc---CCCCCcc-cccCCCCCEEECc-------CCcCCCcccH
Confidence 455566655554432111 12 55555555555554 2222333 5555555555555 55443 3355
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcc-ccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKL-RKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.++++++|++|++++|.+.+.+|.. .+++|++|++++|.....+|..+..+ ++|++|++++|.....+|..++.+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 5555555555555555533333332 45555555555555333444444443 55555555555443344444555555
Q ss_pred ccccCcEEEeCccCCccCcc-cccccccCCCceecCcccC---CC------------------hhhhhHhhccC--CCCC
Q 010462 240 LRSVRKFVVGGGYDRACSLG-SLKKLNLLRDCRIRGLGDV---SD------------------AGEARRAELEK--KKSL 295 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~l~i~~~~~~---~~------------------~~~~~~~~l~~--~~~L 295 (510)
|+.|++..+.... .... .+..+++|+.|++.+.... +. .....+..+.. +++|
T Consensus 320 L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 320 LESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred ccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 5555544433321 1111 1334444444444432110 00 00001111111 4456
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH 375 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~ 375 (510)
+.|+++.|. .....+..+..+++|+.|++++|..... .| ..+..+++|+.|++++|...+.
T Consensus 397 ~~L~L~~n~-----------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p-~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 397 QELYLQNNG-----------------FTGKIPPTLSNCSELVSLHLSFNYLSGT-IP-SSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp CEEECCSSE-----------------EEEECCGGGGGCTTCCEEECCSSEEESC-CC-GGGGGCTTCCEEECCSSCCCSC
T ss_pred cEEECCCCc-----------------cccccCHHHhcCCCCCEEECcCCcccCc-cc-HHHhcCCCCCEEECCCCcccCc
Confidence 666665554 2234556667778888888888876642 56 6777888888888888876666
Q ss_pred CCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCccccee
Q 010462 376 LPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSL 454 (510)
Q Consensus 376 l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 454 (510)
+|. ++.+++|++|+|++|.....++.. +..+++|+.|++++|. +.+..|..++.+++|+.|
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------l~~l~~L~~L~L~~N~------l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSG------------LSNCTNLNWISLSNNR------LTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGG------------GGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEE
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHH------------HhcCCCCCEEEccCCc------cCCcCChHHhcCCCCCEE
Confidence 665 777888888888887632223222 4477889999888775 335567788899999999
Q ss_pred eeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 455 TIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 455 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
++++|...+.+|..+..+++|+.|++++|+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 9999988778999999999999999999964
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=9.9e-30 Score=268.02 Aligned_cols=319 Identities=13% Similarity=0.142 Sum_probs=230.8
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc------------------cccccc--ccCccceEeccCCCCccccchhhh
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK------------------IPTNIE--KLLHLKYLSLFGQKKIEKLPETLC 187 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~lp~~~~ 187 (510)
+|..|..+++|++|+|+ +|.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls-------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA-------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECc-------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 56678899999999999 888777 888887 899999999999987888999899
Q ss_pred cccccceeccCCCC-ccc-cCchhhhccc-------cCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCcc
Q 010462 188 ELYNLERLNVDHCK-NLR-ELPRGIGKLR-------KLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRAC 256 (510)
Q Consensus 188 ~l~~L~~L~L~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~ 256 (510)
++++|++|++++|. ... .+|..+++++ +|++|++++|... .+|. .++.+++|+.|++..+....
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~---- 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH---- 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB----
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc----
Confidence 99999999999987 444 5888777776 8999999998554 8888 88889999999887766542
Q ss_pred CcccccccccCCCceecCcccCCChhhhhHhhccCCCC-CCeEEEEecCCCCCCcccccCC-------CCcch-hhHh--
Q 010462 257 SLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS-LLKLGLHFGHSRDGDEERAGRR-------ENEED-EDER-- 325 (510)
Q Consensus 257 ~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~~~~~-~~~~-- 325 (510)
. +.+..+++|+.|++.+..-. ..+..+..+++ |+.|++++|.....+....... ..... ....
T Consensus 588 l-p~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 588 L-EAFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp C-CCCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred c-hhhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 2 26677778888877763321 22334666777 8888888876542221100000 00000 0010
Q ss_pred -hhccCC--CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C-C-------CCCccceeeccCc
Q 010462 326 -LLEALG--PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L-G-------KLPSLEYLEIEGM 393 (510)
Q Consensus 326 -~~~~l~--~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~-~-------~l~~L~~L~L~~~ 393 (510)
++..+. ..++|+.|++++|.+.. +|..++..+++|+.|+|++|... .+|. . . ++++|+.|+|++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 111122 33589999999999886 88444558999999999999554 5554 2 2 3449999999998
Q ss_pred cccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeecc------CcccccCCc
Q 010462 394 KSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWS------CRKLKALPD 467 (510)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~ 467 (510)
. +..++..+.. ..+++|+.|+++++. ++. +|..+..+++|+.|+|++ |...+.+|.
T Consensus 739 ~-L~~lp~~l~~----------~~l~~L~~L~Ls~N~-L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 739 K-LTSLSDDFRA----------TTLPYLSNMDVSYNC-FSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp C-CCCCCGGGST----------TTCTTCCEEECCSSC-CSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred C-CccchHHhhh----------ccCCCcCEEEeCCCC-CCc------cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 6 5566543320 268999999998875 433 466677899999999977 555677898
Q ss_pred ccCCCCCCcEEEEcCCcc
Q 010462 468 HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 468 ~~~~l~~L~~L~l~~c~~ 485 (510)
.+..+++|+.|++++|..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 999999999999999965
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=251.97 Aligned_cols=338 Identities=17% Similarity=0.116 Sum_probs=224.2
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
.++++|++.++.+...+ ..+. .+++|++|++++|+ +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-------HNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----TCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-------SSCCCEEEC
T ss_pred ccccEEECCCCcccccChhhcc----ccccccEEecCCCc---cCCcChHHhhcccCCCEEecC-------CCceeecCc
Confidence 78999999999887644 3344 89999999999998 556568889999999999999 899989987
Q ss_pred cccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccC--ceeecCCCcc--cccccccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL--MYLHNEGTDS--LRYLPAGI 234 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~l 234 (510)
. .+++|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+
T Consensus 87 ~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp C--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred c--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccc
Confidence 6 89999999999998 554 67889999999999999988 443 346777777 8888888755 33444433
Q ss_pred cC--------------------------cccccccCcEEEe---------------------------------------
Q 010462 235 GE--------------------------LIRLRSVRKFVVG--------------------------------------- 249 (510)
Q Consensus 235 ~~--------------------------l~~L~~L~l~~~~--------------------------------------- 249 (510)
+. +++|+.|++..+.
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 33 4444555444432
Q ss_pred ------------------CccCCccCcccc-----cccccCCCceecCcccCCChh-hhhHhh-----------------
Q 010462 250 ------------------GGYDRACSLGSL-----KKLNLLRDCRIRGLGDVSDAG-EARRAE----------------- 288 (510)
Q Consensus 250 ------------------~~~~~~~~~~~l-----~~l~~L~~l~i~~~~~~~~~~-~~~~~~----------------- 288 (510)
.. +.....+ ..+++|+.+++..... ... ......
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~---~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQ---GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEE---SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHhhhCcccEEEeeccccc---CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence 11 0111111 2222233222221110 000 000000
Q ss_pred ----ccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccC-CCchhHHhhhhccc
Q 010462 289 ----LEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN-VVPISWFMSLTNLR 363 (510)
Q Consensus 289 ----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~p~~~~~~l~~L~ 363 (510)
...+++|+.|++++|. .....+..+..+++|+.|++++|.+..- .+| .++..+++|+
T Consensus 316 ~~~~~~~l~~L~~L~Ls~n~-----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~ 377 (520)
T 2z7x_B 316 HMLCPSKISPFLHLDFSNNL-----------------LTDTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMKSLQ 377 (520)
T ss_dssp CCCCCSSCCCCCEEECCSSC-----------------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCC
T ss_pred cccchhhCCcccEEEeECCc-----------------cChhhhhhhccCCCCCEEEccCCccCccccch-HHHhhCCCCC
Confidence 0234445555554443 2233455667778888888888877640 033 4566788888
Q ss_pred ceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc-cccccccccccccccccccccc
Q 010462 364 FLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF-PKLKHLTFWVMNALEELDFETA 440 (510)
Q Consensus 364 ~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~ 440 (510)
+|++++|.....+|. +..+++|++|++++|.....++ ..+ ++|+.|+++++. ++ .
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~l~~~L~~L~Ls~N~-l~------~ 435 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---------------RCLPPRIKVLDLHSNK-IK------S 435 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG---------------GSCCTTCCEEECCSSC-CC------C
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh---------------hhhcccCCEEECCCCc-cc------c
Confidence 888888866554553 6777888888888876211111 123 688888888874 44 3
Q ss_pred cccccccCcccceeeeccCcccccCCcc-cCCCCCCcEEEEcCCcc
Q 010462 441 IKREIIIMPRLSSLTIWSCRKLKALPDH-LLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 441 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 485 (510)
+|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|+.
T Consensus 436 ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 4555568999999999999 56688876 78899999999999975
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4e-29 Score=240.54 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=196.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++.++. +.. ++. +..+++|++|+++ ++.+..+|. +..+++|++|++++|. ++.+|. +
T Consensus 42 ~l~~L~~L~l~~~~---i~~-~~~-~~~~~~L~~L~l~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEK---VAS-IQG-IEYLTNLEYLNLN-------GNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-L 106 (347)
T ss_dssp HHTTCSEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred hcccccEEEEeCCc---ccc-chh-hhhcCCccEEEcc-------CCccccchh-hhcCCcCCEEEccCCc-ccCchH-H
Confidence 45566666666655 222 222 5556666666666 555555544 5556666666666665 555543 5
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|+.|++..+.... ...+..+++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~ 178 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-----VTPIANLTD 178 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTT
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-----chhhccCCC
Confidence 566666666666665 444544 55666666666666644443332 5555666666555444332 122555556
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.+++.++.. ... ..+..+++|+.+++++|.... . ..+..+++|+.|++++|..
T Consensus 179 L~~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~n~l~~------------------~-~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 179 LYSLSLNYNQI-EDI-----SPLASLTSLHYFTAYVNQITD------------------I-TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CSEEECTTSCC-CCC-----GGGGGCTTCCEEECCSSCCCC------------------C-GGGGGCTTCCEEECCSSCC
T ss_pred CCEEEccCCcc-ccc-----ccccCCCccceeecccCCCCC------------------C-chhhcCCcCCEEEccCCcc
Confidence 66666654322 111 115667888888888775211 1 1156678999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTF 426 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 426 (510)
.. ++ . +..+++|++|++++|. ...++.+..+++|++|++++|. +..++. +..+++|+.|++
T Consensus 234 ~~--~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 TD--LS-P-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNSLFL 294 (347)
T ss_dssp CC--CG-G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEEC
T ss_pred CC--Cc-c-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCEEEC
Confidence 87 77 4 7789999999999994 4556778899999999999986 444321 457899999999
Q ss_pred cccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 427 WVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 427 ~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
++|. +. +..+..++.+++|+.|++++|+ +..++. +..+++|+.|++++|+
T Consensus 295 ~~n~-l~-----~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQ-LG-----NEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSC-CC-----GGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc-CC-----CcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 8885 33 3445566789999999999996 555654 7779999999999996
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=7e-29 Score=257.23 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=121.3
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+ |
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~p 97 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFS----NFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-------GNPIQSFSP 97 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCCCCT
T ss_pred CCcCEEECCCCCcCEeChhhcc----CCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-------CCcccccCh
Confidence 789999999998876443 444 99999999999998 566577789999999999999 8988888 8
Q ss_pred ccccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 237 (510)
..|+++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 889999999999999999 66665 679999999999999998433 579999999999999999996655556666666
Q ss_pred cccc
Q 010462 238 IRLR 241 (510)
Q Consensus 238 ~~L~ 241 (510)
++|+
T Consensus 177 ~~L~ 180 (606)
T 3vq2_A 177 RENP 180 (606)
T ss_dssp HHCT
T ss_pred hccc
Confidence 6655
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.5e-29 Score=257.46 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=121.8
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
..+++|++.++.+... +..+. ++++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+ |
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-------ANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCSEECT
T ss_pred CcCcEEEccCCccCcCChhHhc----cCccceEEECCCCc---cceeChhhccCccccCeeeCC-------CCcccccCh
Confidence 7899999999988764 33444 99999999999998 556678889999999999999 8888776 7
Q ss_pred ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..++++++|++|++++|. +..+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|......|..++.
T Consensus 99 ~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred hhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcccccChhhhhh
Confidence 789999999999999999 6666 6678899999999999998 5544 44 455999999999998655555666778
Q ss_pred ccccc--ccCcEEEe
Q 010462 237 LIRLR--SVRKFVVG 249 (510)
Q Consensus 237 l~~L~--~L~l~~~~ 249 (510)
+++|+ .|++..+.
T Consensus 176 l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 176 LQQATNLSLNLNGND 190 (606)
T ss_dssp TTTCCSEEEECTTCC
T ss_pred hcccceeEEecCCCc
Confidence 88888 55554443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.4e-29 Score=251.47 Aligned_cols=364 Identities=16% Similarity=0.105 Sum_probs=256.8
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
+.+++|++.++.+... +..+. ++++|++|++++|.. ...+.+..|..+++|++|+++ +|.+..+ |
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLD-------YNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECT-------TCTTCEECT
T ss_pred CccCEEEecCCccCcCChhHhc----cCccccEEECcCCcc--cceECcccccccccCCEEeCC-------CCccCccCh
Confidence 7899999999988764 34444 999999999999972 123346678999999999999 8888777 7
Q ss_pred ccccccCccceEeccCCCCccccchh--hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPET--LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..++++++|++|++++|.+.+.+|.. +..+++|++|++++|......|.. +.++++|++|++++|......|..+..
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 88999999999999999933335554 889999999999999944444665 789999999999999766666766766
Q ss_pred c--ccccccCcEEEeCccCCccC-----cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCC
Q 010462 237 L--IRLRSVRKFVVGGGYDRACS-----LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGD 309 (510)
Q Consensus 237 l--~~L~~L~l~~~~~~~~~~~~-----~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 309 (510)
+ .+|+.|++..+......... ...+..+++|+.|++.+..... .............+|+.|+++.+......
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeEeeccccccccc
Confidence 5 56777776665544311111 1123345677888887642211 11111122223478888988877532211
Q ss_pred cccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCcccee
Q 010462 310 EERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYL 388 (510)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L 388 (510)
.......... ...... ...++|+.|++++|..... .| .++..+++|++|++++|......|. ++.+++|++|
T Consensus 256 ~~~~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 256 FGHTNFKDPD----NFTFKG-LEASGVKTCDLSKSKIFAL-LK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TTCCSSCCCC----TTTTGG-GTTSCCCEEECCSSCCCEE-CT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cchhhhccCc----cccccc-ccccCceEEEecCcccccc-ch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 1000000000 000000 1246899999999998762 45 7888999999999999976665564 8899999999
Q ss_pred eccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-
Q 010462 389 EIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD- 467 (510)
Q Consensus 389 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~- 467 (510)
+|++|. +..++... +..+++|+.|+++++. + .+..|..+..+++|+.|++++|. ++.+|.
T Consensus 329 ~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N~-l-----~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 389 (455)
T 3v47_A 329 NLSQNF-LGSIDSRM-----------FENLDKLEVLDLSYNH-I-----RALGDQSFLGLPNLKELALDTNQ-LKSVPDG 389 (455)
T ss_dssp ECCSSC-CCEECGGG-----------GTTCTTCCEEECCSSC-C-----CEECTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ECCCCc-cCCcChhH-----------hcCcccCCEEECCCCc-c-----cccChhhccccccccEEECCCCc-cccCCHh
Confidence 999987 55553332 3478999999998875 3 34446677899999999999995 566665
Q ss_pred ccCCCCCCcEEEEcCCcc
Q 010462 468 HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 468 ~~~~l~~L~~L~l~~c~~ 485 (510)
.+..+++|+.|++++|+.
T Consensus 390 ~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhccCCcccEEEccCCCc
Confidence 457899999999998864
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.9e-29 Score=253.07 Aligned_cols=360 Identities=18% Similarity=0.180 Sum_probs=231.1
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..+++|++.++.+...+ ..+. .+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-------DNHLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCSCCH
T ss_pred CCccEEECcCCccCccChhhhh----cCCcccEEECCCCC---cCccChhhccccccCCEEECC-------CCccCccCH
Confidence 68999999998877543 3344 89999999999997 555567778999999999999 888888755
Q ss_pred -cccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccccccC
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
.++++++|++|++++|. +.. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 48889999999999998 664 46678899999999999987666666 46888999999999988766667777776
Q ss_pred cccccccCcEEEeC------------------------ccCCccCcccccccccCCC-----------------------
Q 010462 237 LIRLRSVRKFVVGG------------------------GYDRACSLGSLKKLNLLRD----------------------- 269 (510)
Q Consensus 237 l~~L~~L~l~~~~~------------------------~~~~~~~~~~l~~l~~L~~----------------------- 269 (510)
+++|+.|++..+.. .............+++|+.
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 66666665544332 1100000000001111111
Q ss_pred -----ceecCccc--CCChhh----------------------------------------------------hhH-hhc
Q 010462 270 -----CRIRGLGD--VSDAGE----------------------------------------------------ARR-AEL 289 (510)
Q Consensus 270 -----l~i~~~~~--~~~~~~----------------------------------------------------~~~-~~l 289 (510)
+++.++.. ...... ..+ ..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 11111100 000000 000 001
Q ss_pred cCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhh---hccCCCCCCccEEEEeecCCccCCCch--hHHhhhhcccc
Q 010462 290 EKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL---LEALGPPPNLKKLRIDEYRGRRNVVPI--SWFMSLTNLRF 364 (510)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~p~--~~~~~l~~L~~ 364 (510)
..+++|+.|++++|. ..... ...+..+++|+.|++++|.... ++. ..+..+++|++
T Consensus 331 ~~l~~L~~L~Ls~N~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 331 QHLKSLEFLDLSENL-----------------MVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTS 391 (549)
T ss_dssp HHCTTCCEEECCSSC-----------------CCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCE
T ss_pred hcCccccEEEccCCc-----------------cccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCE
Confidence 123334444444333 22222 3346778899999999998776 541 34678999999
Q ss_pred eeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCC------CCCCCcccccccccccccccccccccccc
Q 010462 365 LFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVES------DTDGSSVIAFPKLKHLTFWVMNALEELDF 437 (510)
Q Consensus 365 L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 437 (510)
|++++|... .+|. ++.+++|++|++++|. ++.++........ -.-......+++|++|+++++. ++.+.
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip- 467 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLP- 467 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCC-
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCC-
Confidence 999999544 5665 7888999999999887 4443322110000 0000011357778888877774 55432
Q ss_pred ccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 438 ETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
. ...+++|+.|++++|...+..|..+..+++|+.|++++|+.
T Consensus 468 -----~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 468 -----D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -----C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -----C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 2 24689999999999965444455688899999999999874
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=253.94 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=111.0
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP- 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp- 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.+..|..+++|++|+++ ++.+..+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT----TCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred ccccEEEccCCccCccChhHhh----CCCCceEEECCCCc---CCccCcccccCchhCCEEeCc-------CCcCCccCH
Confidence 678999999888775432 333 88999999999987 555567778889999999998 88887774
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 237 (510)
..|+++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 678889999999999888 777765 58888999999999888333 368888888999999988885544444445555
Q ss_pred ccc
Q 010462 238 IRL 240 (510)
Q Consensus 238 ~~L 240 (510)
++|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 555
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.6e-28 Score=258.03 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=128.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT- 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~- 160 (510)
.++++|++.++.+...+.. .|.++++|++|++++|. +..+.|.+|..+++|++|+++ +|.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-------HNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-------CCccCccChh
Confidence 7899999999988765542 23489999999999998 556678889999999999999 999999976
Q ss_pred cccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccccc--Cc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIG--EL 237 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l 237 (510)
.|+++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|......+..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 68999999999999999 66665 6799999999999999985556677788999999999999955444344333 45
Q ss_pred ccccccCcEEEeCc
Q 010462 238 IRLRSVRKFVVGGG 251 (510)
Q Consensus 238 ~~L~~L~l~~~~~~ 251 (510)
++|+.|++..+...
T Consensus 171 ~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 171 SSLKKLELSSNQIK 184 (680)
T ss_dssp CEESEEECTTCCCC
T ss_pred ccccEEECCCCccc
Confidence 78898888776554
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=5.6e-28 Score=242.86 Aligned_cols=316 Identities=20% Similarity=0.134 Sum_probs=216.7
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~ 164 (510)
.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.+
T Consensus 15 ~v~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP------TETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-------ENIVSAVEPGAFNN 78 (477)
T ss_dssp EEECCSCCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTT
T ss_pred EEEeCCCCcCcCCCCCC------CCCcEEECCCCc---cceECHhHccCCCCCCEEECC-------CCccCEeChhhhhC
Confidence 45555555665665543 678889999887 555566778888999999998 8888777 778888
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 243 (510)
+++|++|++++|. ++.+|.. +.++++|++|++++|......|..+.++++|++|++++|......|..++.+++|+.|
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 8999999999888 7777754 6788999999999888555566778888999999998886655556678888888888
Q ss_pred CcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhh
Q 010462 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323 (510)
Q Consensus 244 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (510)
++..+.... .....+..+++|+.|++.+... .......+..+++|+.|+++.+. ..
T Consensus 158 ~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~-----------------~~ 213 (477)
T 2id5_A 158 TLEKCNLTS---IPTEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWP-----------------YL 213 (477)
T ss_dssp EEESCCCSS---CCHHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCT-----------------TC
T ss_pred ECCCCcCcc---cChhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCCCc-----------------cc
Confidence 887765542 2223456666777777665321 11222356667788888887765 22
Q ss_pred HhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEeccc
Q 010462 324 ERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNE 402 (510)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~ 402 (510)
..++.......+|+.|++++|.+.. +|...+..+++|+.|+|++|......+. +..+++|+.|+|++|. +..++..
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 290 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY 290 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT
T ss_pred cccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH
Confidence 2233334444578888888887776 6645667788888888888854443333 7778888888888776 4443222
Q ss_pred ccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 403 FLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
. +..+++|+.|+++++. ++.+ .+..+..+++|+.|++++|+..
T Consensus 291 ~-----------~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 291 A-----------FRGLNYLRVLNVSGNQ-LTTL-----EESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp T-----------BTTCTTCCEEECCSSC-CSCC-----CGGGBSCGGGCCEEECCSSCEE
T ss_pred H-----------hcCcccCCEEECCCCc-Ccee-----CHhHcCCCcccCEEEccCCCcc
Confidence 1 2356777777777763 4432 2334456777788888777654
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.7e-28 Score=251.05 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
+..+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|+.|++..+.... ......+..++
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~ 350 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLE 350 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTCT
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhccC
Confidence 4455555555555555 44555555555555555555554333334445555555555554443321 11112244444
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
+|+.+++.+..... . ......+..+++|+.|++++|.. ....+..+..+++|+.|++++|.
T Consensus 351 ~L~~L~l~~n~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 351 NLRELDLSHDDIET-S-DCCNLQLRNLSHLQSLNLSYNEP-----------------LSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TCCEEECCSSCCCE-E-EESTTTTTTCTTCCEEECCSCSC-----------------EEECTTTTTTCTTCSEEECTTCC
T ss_pred cCCEEECCCCcccc-c-cCcchhcccCCCCCEEECCCCcC-----------------CcCCHHHhcCCccCCeEECCCCc
Confidence 55555544321100 0 00022344455555555555531 11122233344444444444444
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccc--------------------------cEE
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKS--------------------------VKR 398 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~--------------------------l~~ 398 (510)
......+ .++..+++|+.|++++|......|. ++.+++|++|++++|.. +..
T Consensus 412 l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQ-SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTC-CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccc-hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 3321011 2233444444444444433332222 34444444444444431 222
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEE
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKL 478 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 478 (510)
++... +..+++|+.|+++++. +.+..|..+..+++| .|++++|......|..+..+++|+.|
T Consensus 491 ~~~~~-----------~~~l~~L~~L~Ls~N~------l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 491 IDQHA-----------FTSLKMMNHVDLSHNR------LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp ECTTT-----------TTTCTTCCEEECCSSC------CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cChhh-----------hccccCCCEEECCCCc------cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 21111 2244555555555442 223345555666777 77777775443344445667777788
Q ss_pred EEcCCcch
Q 010462 479 HIRRCPIL 486 (510)
Q Consensus 479 ~l~~c~~l 486 (510)
++++||..
T Consensus 553 ~l~~N~~~ 560 (606)
T 3t6q_A 553 NLRQNPLD 560 (606)
T ss_dssp ECTTCCEE
T ss_pred eCCCCCcc
Confidence 88777643
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=245.15 Aligned_cols=338 Identities=14% Similarity=0.071 Sum_probs=207.8
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
+.+++|++.++.+...+ ..+. .+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-------HNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECS
T ss_pred CCcCEEECCCCCccccChhhhc----cCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-------CCcCCccCc
Confidence 67788888877776544 2333 77888888888886 555556677788888888888 777777776
Q ss_pred cccccCccceEeccCCCCcccc--chhhhcccccceeccCCCCccccCchhhhccccC--ceeecCCCcc--cccccccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKL--PETLCELYNLERLNVDHCKNLRELPRGIGKLRKL--MYLHNEGTDS--LRYLPAGI 234 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~l 234 (510)
. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccc
Confidence 6 67888888888887 6554 3677788888888888776 332 234455555 7777777644 23333333
Q ss_pred cCc--------------------------cc-------------------------------------------------
Q 010462 235 GEL--------------------------IR------------------------------------------------- 239 (510)
Q Consensus 235 ~~l--------------------------~~------------------------------------------------- 239 (510)
..+ ++
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 222 22
Q ss_pred ------ccccCcEEEeCccCCccCcccc-----cccccCCCceecCcccCCChhhhhHhhc-------------------
Q 010462 240 ------LRSVRKFVVGGGYDRACSLGSL-----KKLNLLRDCRIRGLGDVSDAGEARRAEL------------------- 289 (510)
Q Consensus 240 ------L~~L~l~~~~~~~~~~~~~~~l-----~~l~~L~~l~i~~~~~~~~~~~~~~~~l------------------- 289 (510)
|+.|++..+.... ..+..+ ..++.|+.+++.... + .........+
T Consensus 272 ~~~~~~L~~L~l~~n~l~~---~ip~~~~~~~~~~L~~L~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITE---RIDREEFTYSETALKSLMIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHTTSSEEEEEEEEEEECS---CCCCCCCCCCSCSCCEEEEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred hhhcccccEEEEeccEeec---cccchhhhcccccchheehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCcccc
Confidence 2222222222210 011111 111111111111100 0 0000000011
Q ss_pred ---cCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCch--hHHhhhhcccc
Q 010462 290 ---EKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPI--SWFMSLTNLRF 364 (510)
Q Consensus 290 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~--~~~~~l~~L~~ 364 (510)
..+++|+.|++++|. .....+..+..+++|+.|++++|.... ++. ..+..+++|+.
T Consensus 347 ~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNV-----------------FTDSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSSCCCCCEEECCSSC-----------------CCTTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCE
T ss_pred cCccCCCCceEEECCCCc-----------------cccchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCE
Confidence 344556666665554 223345666778888888888887765 441 34567888888
Q ss_pred eeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc-ccccccccccccccccccccccc
Q 010462 365 LFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF-PKLKHLTFWVMNALEELDFETAI 441 (510)
Q Consensus 365 L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~ 441 (510)
|++++|.....+|. +..+++|++|++++|. +. ... ...+ ++|+.|+++++. ++. +
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~---~~~-----------~~~l~~~L~~L~L~~N~-l~~------i 465 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LT---GSV-----------FRCLPPKVKVLDLHNNR-IMS------I 465 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CC---GGG-----------GSSCCTTCSEEECCSSC-CCC------C
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCC-CC---cch-----------hhhhcCcCCEEECCCCc-Ccc------c
Confidence 88888866554554 6778888888888876 21 111 1133 589999988874 543 4
Q ss_pred ccccccCcccceeeeccCcccccCCcc-cCCCCCCcEEEEcCCcch
Q 010462 442 KREIIIMPRLSSLTIWSCRKLKALPDH-LLQKTTLQKLHIRRCPIL 486 (510)
Q Consensus 442 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l 486 (510)
|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.-
T Consensus 466 p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 466 PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 555568999999999999 46688887 888999999999999853
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=247.84 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=122.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+++++.++.+..+|..+. ++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+ |..|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS------QKTTILNISQNY---ISELWTSDILSLSKLRILIIS-------HNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC------TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-------SSCCCEEEGGGGT
T ss_pred ceEecCCCCccccccccc------ccccEEECCCCc---ccccChhhccccccccEEecC-------CCccCCcChHHhh
Confidence 567888888887776542 899999999998 566577789999999999999 9998888 78999
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCcccc--
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL-- 240 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-- 240 (510)
++++|++|++++|. ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..++.+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 99999999999999 8899986 89999999999999443 468899999999999999995433 346777788
Q ss_pred cccCcEEEeC
Q 010462 241 RSVRKFVVGG 250 (510)
Q Consensus 241 ~~L~l~~~~~ 250 (510)
+.|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999888766
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=253.05 Aligned_cols=279 Identities=19% Similarity=0.092 Sum_probs=187.4
Q ss_pred CCceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-
Q 010462 81 ETKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI- 158 (510)
Q Consensus 81 ~~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l- 158 (510)
++.+++|++.++.+... +..+. ++++|++|++++|.. ...+.|..|..+++|++|+|+ +|.+..+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-------~N~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-------SSKIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-------TCCCCEEC
T ss_pred CCCcCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-------CCcCcccC
Confidence 38899999999988763 34444 999999999999952 444457789999999999999 8988877
Q ss_pred cccccccCccceEeccCCCCccccchh--hhcccccceeccCCCCccccC-chhhhccccCceeecCCCccccccccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLPET--LCELYNLERLNVDHCKNLREL-PRGIGKLRKLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 235 (510)
|..|+++++|++|++++|...+.+|.. +.++++|++|++++|...... +..++++++|++|++++|......|..++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 889999999999999999944446665 889999999999999843333 35689999999999999976566666666
Q ss_pred Cc--ccccccCcEEEeCccCCccCcccccccc------cCCCceecCcccC-----------------------------
Q 010462 236 EL--IRLRSVRKFVVGGGYDRACSLGSLKKLN------LLRDCRIRGLGDV----------------------------- 278 (510)
Q Consensus 236 ~l--~~L~~L~l~~~~~~~~~~~~~~~l~~l~------~L~~l~i~~~~~~----------------------------- 278 (510)
.+ ++|+.|++..+..... ....+..+. .|+.+++++....
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSR---VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCC---CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccCCccceEECCCCccccc---cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 65 6677776665544321 111111111 1333333321000
Q ss_pred -----------------------------CChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhcc
Q 010462 279 -----------------------------SDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEA 329 (510)
Q Consensus 279 -----------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (510)
..........+..+++|+.|+++.|. .....+..
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------i~~~~~~~ 309 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-----------------INKIADEA 309 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-----------------CCEECTTT
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-----------------CCCCChHH
Confidence 00001112234455666666666664 22223445
Q ss_pred CCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 330 LGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+..+++|+.|++++|..... .| ..+..+++|+.|++++|......+. +..+++|++|+|++|.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~-~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGEL-YS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCC-CS-CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCCCCcc-CH-HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 66777888888888877651 24 5667788888888888754333332 6777888888887765
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.9e-28 Score=250.29 Aligned_cols=358 Identities=18% Similarity=0.147 Sum_probs=225.0
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.+...+..+..+|..+. +++++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP------SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLS-------RCEIETIEDKAWH 77 (606)
T ss_dssp TEEECTTSCCSSCCTTSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTT
T ss_pred CceEccCCCcccCCCCCC------CCcCEEECCCCC---cCEeChhhccCCccCcEEeCC-------CCcccccCHHHhh
Confidence 345666666776776543 789999999998 566567679999999999999 9998888 67899
Q ss_pred ccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccc-cccccccCcccc
Q 010462 164 KLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRL 240 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L 240 (510)
++++|++|++++|. +..+ |.+++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|
T Consensus 78 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 78 GLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred chhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 99999999999999 6665 8889999999999999999 55555 779999999999999996544 579999999999
Q ss_pred cccCcEEEeCccCCccCcccccccccCC----CceecCccc--CCC------------------hhhhhHhhccCCCCCC
Q 010462 241 RSVRKFVVGGGYDRACSLGSLKKLNLLR----DCRIRGLGD--VSD------------------AGEARRAELEKKKSLL 296 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~----~l~i~~~~~--~~~------------------~~~~~~~~l~~~~~L~ 296 (510)
++|++..+..... ....+..+.+|+ .+++..... +.. ........+..++.|+
T Consensus 156 ~~L~Ls~n~l~~~---~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 156 VHVDLSYNYIQTI---TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp CEEECCSSCCCEE---CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred CEEEccCCcceec---ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccc
Confidence 9999988766532 222333333333 344433111 000 0112223334444444
Q ss_pred eEEEEecCCCCCCccc----ccCCC------------CcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhh
Q 010462 297 KLGLHFGHSRDGDEER----AGRRE------------NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLT 360 (510)
Q Consensus 297 ~L~l~~~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~ 360 (510)
.+.+..+.+....... ..... .........+. +..+++|+.|+++++.... +| ++..++
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--l~--~l~~~~ 307 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY--LE--DVPKHF 307 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC--CC--CCCTTC
T ss_pred cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh--hh--hccccc
Confidence 4444333211100000 00000 00001111222 4556677777777777655 55 455667
Q ss_pred cccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccc----------
Q 010462 361 NLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMN---------- 430 (510)
Q Consensus 361 ~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------- 430 (510)
+|++|++++|.. +.+|.+ .+++|++|++++|..+..++ +..+++|+.|+++++.
T Consensus 308 ~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--------------KVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--------------CCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred cCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--------------hccCCCCCEEECcCCccCCCcchhhh
Confidence 777777777754 566655 66777777776664333321 1234455555544332
Q ss_pred -----cccccccc----cccccccccCcccceeeeccCcccccCC-cccCCCCCCcEEEEcCCc
Q 010462 431 -----ALEELDFE----TAIKREIIIMPRLSSLTIWSCRKLKALP-DHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 431 -----~L~~~~~~----~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 484 (510)
.|+.+.+. ...|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 11111111 1234455677888888888885544444 466778888888888875
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.6e-27 Score=238.51 Aligned_cols=326 Identities=19% Similarity=0.214 Sum_probs=188.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++. +. .+++|++|++++|. +.. .+. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~----~l~~L~~L~Ls~n~---l~~-~~~-~~~l~~L~~L~l~-------~n~l~~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred ccccEEecCCCCCccCcc-hh----hhcCCCEEECCCCc---cCC-chh-hhccccCCEEECC-------CCccccChh-
Confidence 456777777666654432 33 67777777777776 333 233 6777777777777 777766655
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+.++++|++|++++|. ++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ ...++. ++.+++|+
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~ 180 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLE 180 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCC
Confidence 7777777777777776 666665 6777777777777776 555543 555555555555422 122222 44555555
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChh----------------hhhHhhccCCCCCCeEEEEecCC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAG----------------EARRAELEKKKSLLKLGLHFGHS 305 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~----------------~~~~~~l~~~~~L~~L~l~~~~~ 305 (510)
.|++..+.... +..+..+++|+.|++.+........ -.....+..+++|+.|++++|..
T Consensus 181 ~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred EEECcCCcCCC-----ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc
Confidence 55554443321 1234444444444444321111000 00001233445555555554431
Q ss_pred CCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCcc
Q 010462 306 RDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSL 385 (510)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L 385 (510)
. .. ..+..+++|+.|++++|.... ++ . +..+++|+.|++++|. +..++.++.+++|
T Consensus 256 ~------------------~~-~~~~~l~~L~~L~l~~n~l~~--~~-~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 311 (466)
T 1o6v_A 256 S------------------NL-APLSGLTKLTELKLGANQISN--IS-P-LAGLTALTNLELNENQ-LEDISPISNLKNL 311 (466)
T ss_dssp C------------------CC-GGGTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCSEEECCSSC-CSCCGGGGGCTTC
T ss_pred c------------------cc-hhhhcCCCCCEEECCCCccCc--cc-c-ccCCCccCeEEcCCCc-ccCchhhcCCCCC
Confidence 1 01 114556667777777766655 55 3 5566777777777763 3334446667777
Q ss_pred ceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccC
Q 010462 386 EYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL 465 (510)
Q Consensus 386 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 465 (510)
+.|++++|. +..++. +..+++|+.|++++|. ++.+ ..+..+++|+.|++++|... .+
T Consensus 312 ~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~l~-~~ 368 (466)
T 1o6v_A 312 TYLTLYFNN-ISDISP-------------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQIS-DL 368 (466)
T ss_dssp SEEECCSSC-CSCCGG-------------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSCCC-BC
T ss_pred CEEECcCCc-CCCchh-------------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCccC-cc
Confidence 777777765 222211 3467788888877774 4443 23467888999999888654 44
Q ss_pred CcccCCCCCCcEEEEcCCcc
Q 010462 466 PDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 466 p~~~~~l~~L~~L~l~~c~~ 485 (510)
++ +..+++|+.|++++|+.
T Consensus 369 ~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG-GTTCTTCCEEECCCEEE
T ss_pred ch-hhcCCCCCEEeccCCcc
Confidence 43 77788999999988864
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.5e-27 Score=233.13 Aligned_cols=308 Identities=17% Similarity=0.112 Sum_probs=228.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc-ch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL-PE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-p~ 184 (510)
.+++++.|++.++. +..+.+..|..+++|++|+++ ++.+..++ ..+..+++|++|++++|. +..+ |.
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECC-------CCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 56788888888886 555455667888888888888 88877774 477888888888888888 5555 45
Q ss_pred hhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+.++++|++|++++|. +..+|.. +.++++|++|++++|......|..++.+++|+.|++..+.... . .+..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~---~~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---C---CGGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---c---cccc
Confidence 57888888888888887 6677766 4778888888888886555555667888888888887765543 1 2455
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
+++|+.+++....- ..+.....|+.|++++|... .++. ..+++|+.|++++
T Consensus 185 l~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~------------------~~~~--~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 185 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSIN------------------VVRG--PVNVELTILKLQH 235 (390)
T ss_dssp CTTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCC------------------EEEC--CCCSSCCEEECCS
T ss_pred ccccceeecccccc---------cccCCCCcceEEECCCCeee------------------eccc--cccccccEEECCC
Confidence 56677766654211 12334568999999888621 1111 2357899999999
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLK 422 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 422 (510)
|.... .+ ++..+++|++|++++|......|. ++.+++|++|+|++|. ++.++.. ...+|+|+
T Consensus 236 n~l~~--~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~~l~~L~ 298 (390)
T 3o6n_A 236 NNLTD--TA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLK 298 (390)
T ss_dssp SCCCC--CG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------SSCCTTCC
T ss_pred CCCcc--cH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------cCCCCCCC
Confidence 99876 44 788999999999999976655454 8899999999999987 6555432 23689999
Q ss_pred cccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchHH
Q 010462 423 HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEE 488 (510)
Q Consensus 423 ~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 488 (510)
.|+++++. ++. +|..+..+++|+.|++++|+ +..++ +..+++|+.|++++|+.-.+
T Consensus 299 ~L~L~~n~-l~~------~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 299 VLDLSHNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCc-cee------cCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccch
Confidence 99999985 543 34445689999999999995 56665 66789999999999985443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.9e-27 Score=237.72 Aligned_cols=333 Identities=13% Similarity=0.101 Sum_probs=240.0
Q ss_pred CceeEEEEEeecCCC-c-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGAS-V-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
.+++.|.+.++.... . +..+ ..+++|++|++++|. +....|..|..+++|++|+++ +|.+.. +
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~----~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~ 119 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLT-------QCNLDGAV 119 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTT----TTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECT-------TSCCBTHH
T ss_pred ccccEEECcCCcccceECcccc----cccccCCEEeCCCCc---cCccChhhccCcccCCEEeCC-------CCCCCccc
Confidence 789999999987752 2 2334 489999999999998 556568889999999999999 888775 3
Q ss_pred ccc--ccccCccceEeccCCCCcccc-chh-hhcccccceeccCCCCccccCchhhhcc--ccCceeecCCCcccccccc
Q 010462 159 PTN--IEKLLHLKYLSLFGQKKIEKL-PET-LCELYNLERLNVDHCKNLRELPRGIGKL--RKLMYLHNEGTDSLRYLPA 232 (510)
Q Consensus 159 p~~--i~~l~~L~~L~l~~~~~~~~l-p~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~~p~ 232 (510)
|.. +..+++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+ .+|+.|++++|......+.
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred cCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 444 8899999999999999 5555 665 8899999999999999656667777766 7899999999954332222
Q ss_pred --------cccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCC------hhhhhHhhcc--CCCCCC
Q 010462 233 --------GIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSD------AGEARRAELE--KKKSLL 296 (510)
Q Consensus 233 --------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~------~~~~~~~~l~--~~~~L~ 296 (510)
.+..+++|+.|++..+.........+.......+|+.+.+.+...... ........+. ..++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 133567899998887765431111111122225566666654321110 0000011111 236899
Q ss_pred eEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcC
Q 010462 297 KLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHL 376 (510)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l 376 (510)
.|+++.|. .....+..+..+++|++|++++|.... ++...+..+++|++|++++|......
T Consensus 279 ~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 279 TCDLSKSK-----------------IFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp EEECCSSC-----------------CCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred EEEecCcc-----------------ccccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcC
Confidence 99999987 333456677889999999999999886 43267889999999999999665544
Q ss_pred CC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceee
Q 010462 377 PP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLT 455 (510)
Q Consensus 377 ~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 455 (510)
+. ++.+++|++|+|++|. +..++... +..+++|++|+++++. ++.+. +..+..+++|+.|+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNH-IRALGDQS-----------FLGLPNLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIW 401 (455)
T ss_dssp GGGGTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEE
T ss_pred hhHhcCcccCCEEECCCCc-ccccChhh-----------ccccccccEEECCCCc-cccCC-----HhHhccCCcccEEE
Confidence 54 8899999999999997 55553222 3478999999999875 55432 33456899999999
Q ss_pred eccCcccccCC
Q 010462 456 IWSCRKLKALP 466 (510)
Q Consensus 456 l~~c~~l~~lp 466 (510)
+++|+.....|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 99998766665
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.1e-27 Score=242.16 Aligned_cols=353 Identities=15% Similarity=0.104 Sum_probs=231.6
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTN 161 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~ 161 (510)
..+++++.++.+..+|..+ .++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 95 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-------HNRIRSLDFHV 95 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-------SCCCCEECTTT
T ss_pred CCcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEECC-------CCCCCcCCHHH
Confidence 3478899998888777654 3899999999998 566567789999999999999 9999888 778
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCcccccccccccCccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
|.++++|++|++++|. ++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..++.+++
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~ 168 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAH 168 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTT
T ss_pred hCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhh
Confidence 9999999999999999 8899987 89999999999999 6554 5789999999999999985433 34555666
Q ss_pred c--cccCcEEEeC--ccCCccCccc-----------------------ccccccCCCceecCcc----------------
Q 010462 240 L--RSVRKFVVGG--GYDRACSLGS-----------------------LKKLNLLRDCRIRGLG---------------- 276 (510)
Q Consensus 240 L--~~L~l~~~~~--~~~~~~~~~~-----------------------l~~l~~L~~l~i~~~~---------------- 276 (510)
| +.|++..+.. .......+.. +..+++|+.+++....
T Consensus 169 L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp SCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred ceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 6 8888887765 2211111111 1234445555444311
Q ss_pred ------------cCCChhhhhHhhccCCCCCCeEEEEecCCCCC-CcccccC--CCCc---------------chhhHhh
Q 010462 277 ------------DVSDAGEARRAELEKKKSLLKLGLHFGHSRDG-DEERAGR--RENE---------------EDEDERL 326 (510)
Q Consensus 277 ------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~---------------~~~~~~~ 326 (510)
............ ....+|+.|++++|..... +...+.. .... .......
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 000000000111 1223788888887763311 1100000 0000 0000000
Q ss_pred ----------------hc--cCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC----CCCCCCc
Q 010462 327 ----------------LE--ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP----PLGKLPS 384 (510)
Q Consensus 327 ----------------~~--~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~ 384 (510)
.. ....+++|++|++++|..... .| .++..+++|+.|++++|... .++ .++.+++
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VF-QGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TT-TTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTT
T ss_pred hccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc-hh-hhhcccCCCCEEECCCCCcC-CcccchhhhcCCCC
Confidence 00 004566777777777776652 44 56667777888888777433 332 2677778
Q ss_pred cceeeccCccccEE-ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccC-cccceeeeccCccc
Q 010462 385 LEYLEIEGMKSVKR-VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIM-PRLSSLTIWSCRKL 462 (510)
Q Consensus 385 L~~L~L~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l 462 (510)
|++|++++|. +.. ++... +..+++|+.|+++++. ++ +..|. .+ ++|+.|++++| .+
T Consensus 405 L~~L~l~~N~-l~~~~~~~~-----------~~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N-~l 462 (562)
T 3a79_B 405 LETLDVSLNS-LNSHAYDRT-----------CAWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNN-RI 462 (562)
T ss_dssp CCEEECTTSC-CBSCCSSCC-----------CCCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSS-CC
T ss_pred CCEEECCCCc-CCCccChhh-----------hcCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCC-cC
Confidence 8888887776 322 33322 2356788888887765 32 23333 34 69999999999 67
Q ss_pred ccCCcccCCCCCCcEEEEcCCc
Q 010462 463 KALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 463 ~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
+.+|..+..+++|+.|++++|.
T Consensus 463 ~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 463 MSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCCCTTTTSSCCCSEEECCSSC
T ss_pred cccChhhcCCCCCCEEECCCCC
Confidence 7899888899999999999985
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-27 Score=241.26 Aligned_cols=308 Identities=17% Similarity=0.113 Sum_probs=232.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+++++.+++.+|. +..+.+..|..+++|++|+++ ++.+..++ ..|+.+++|++|++++|. +..+| .
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-------CCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 56788888888886 556566667888899999998 88887774 478888899999999888 55554 4
Q ss_pred hhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.++++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|+.|++..+.... . .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhh
Confidence 56888999999999888 6677766 4788899999998886655556678888888888887766543 1 2455
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
+++|+.+++.+..- ..+....+|+.|++++|... .++. ..+++|+.|++++
T Consensus 191 l~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~------------------~~~~--~~~~~L~~L~L~~ 241 (597)
T 3oja_B 191 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSIN------------------VVRG--PVNVELTILKLQH 241 (597)
T ss_dssp CTTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCC------------------EEEC--SCCSCCCEEECCS
T ss_pred hhhhhhhhcccCcc---------ccccCCchhheeeccCCccc------------------cccc--ccCCCCCEEECCC
Confidence 66677776664211 12344568999999888621 1111 1236899999999
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLK 422 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 422 (510)
|.+.. . .++..+++|+.|++++|......|. ++.+++|+.|+|++|. +..++.. ...+|+|+
T Consensus 242 n~l~~--~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~ 304 (597)
T 3oja_B 242 NNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLK 304 (597)
T ss_dssp SCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCC
T ss_pred CCCCC--C--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCc
Confidence 99876 3 4788999999999999976666564 8899999999999987 6555432 23689999
Q ss_pred cccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchHH
Q 010462 423 HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEE 488 (510)
Q Consensus 423 ~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 488 (510)
.|++++|. +.. +|..+..+++|+.|++++|. +..+| +..+++|+.|++++|+.-.+
T Consensus 305 ~L~Ls~N~-l~~------i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 305 VLDLSHNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCC-CCc------cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999985 443 45555789999999999995 45665 66789999999999986444
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.1e-26 Score=223.51 Aligned_cols=302 Identities=19% Similarity=0.193 Sum_probs=237.2
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|.+.++.+..++. +. .+++|++|++++|. +.. ++. +..+++|++|+++ +|.+..+| .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~----~~~~L~~L~l~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IE----YLTNLEYLNLNGNQ---ITD-ISP-LSNLVKLTNLYIG-------TNKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-hh----hcCCccEEEccCCc---ccc-chh-hhcCCcCCEEEcc-------CCcccCch-H
Confidence 789999999988776543 44 89999999999998 444 344 8999999999999 88888886 5
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+.++++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++|.. ..++. ++.+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCC
Confidence 8999999999999999 888887 89999999999999985666655 99999999999999954 44444 88899999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +..+..+++|+.+++.+.... .. ..+..+++|+.|++++|....
T Consensus 181 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~~L~~L~l~~n~l~~-------------- 235 (347)
T 4fmz_A 181 SLSLNYNQIED-----ISPLASLTSLHYFTAYVNQIT-DI-----TPVANMTRLNSLKIGNNKITD-------------- 235 (347)
T ss_dssp EEECTTSCCCC-----CGGGGGCTTCCEEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCCC--------------
T ss_pred EEEccCCcccc-----cccccCCCccceeecccCCCC-CC-----chhhcCCcCCEEEccCCccCC--------------
Confidence 99988776543 333777888888888764322 11 126788999999999986221
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
.+ .+..+++|+.|++++|.... ++ .+..+++|++|++++|. +..++.+..+++|+.|++++|. +...+.
T Consensus 236 ----~~-~~~~l~~L~~L~l~~n~l~~--~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 236 ----LS-PLANLSQLTWLEIGTNQISD--IN--AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp ----CG-GGTTCTTCCEEECCSSCCCC--CG--GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred ----Cc-chhcCCCCCEEECCCCccCC--Ch--hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCc-CCCcCh
Confidence 11 16788999999999998876 55 57789999999999994 5556778899999999999987 332222
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
.. +..+++|+.|++++|+ ++.+. | +..+++|+.|++++|+.
T Consensus 305 ~~-----------l~~l~~L~~L~L~~n~-l~~~~-----~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 305 EV-----------IGGLTNLTTLFLSQNH-ITDIR-----P--LASLSKMDSADFANQVI 345 (347)
T ss_dssp HH-----------HHTCTTCSEEECCSSS-CCCCG-----G--GGGCTTCSEESSSCC--
T ss_pred hH-----------hhccccCCEEEccCCc-ccccc-----C--hhhhhccceeehhhhcc
Confidence 11 3478999999999986 54432 2 46899999999999964
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=244.10 Aligned_cols=148 Identities=20% Similarity=0.145 Sum_probs=121.5
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~ 164 (510)
.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~~~ 74 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQS 74 (570)
T ss_dssp EEECCSSCCSSCCSSSC------SSCCEEECCSCC---CCEECTTTTTTCSSCCEEECT-------TCCCCEECTTTTTT
T ss_pred EEEeCCCCccccCCCcc------ccccEEEccCCc---cCccChhHhhCCCCceEEECC-------CCcCCccCcccccC
Confidence 34444445555665443 579999999998 555566679999999999999 9988888 467899
Q ss_pred cCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLR 241 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~ 241 (510)
+++|++|++++|. +..+| ..+.++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|+
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 75 LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred chhCCEEeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 9999999999999 66665 679999999999999998 777665 58999999999999996544 4789999999999
Q ss_pred ccCcEEEeCc
Q 010462 242 SVRKFVVGGG 251 (510)
Q Consensus 242 ~L~l~~~~~~ 251 (510)
+|++..+...
T Consensus 153 ~L~l~~n~l~ 162 (570)
T 2z63_A 153 HLDLSSNKIQ 162 (570)
T ss_dssp EEECTTSCCC
T ss_pred EEeCcCCccc
Confidence 9998776554
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7.5e-27 Score=239.09 Aligned_cols=349 Identities=16% Similarity=0.115 Sum_probs=230.9
Q ss_pred EEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccC
Q 010462 88 MLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLL 166 (510)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~ 166 (510)
+..++.+..+|..+ .++|++|++++|. +..+.|..|..+++|++|+++ +|.+..++ ..|++++
T Consensus 11 ~~~~~~l~~ip~~~------~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 11 DGRSRSFTSIPSGL------TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-------SSRINTIEGDAFYSLG 74 (549)
T ss_dssp ECTTSCCSSCCSCC------CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-------TSCCCEECTTTTTTCT
T ss_pred ECCCCccccccccC------CCCccEEECcCCc---cCccChhhhhcCCcccEEECC-------CCCcCccChhhccccc
Confidence 34444555556544 3789999999998 556567779999999999999 99988884 7899999
Q ss_pred ccceEeccCCCCccccch-hhhcccccceeccCCCCccc--cCchhhhccccCceeecCCCccccccc-ccccCcccccc
Q 010462 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR--ELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRS 242 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 242 (510)
+|++|++++|. +..+|. .++++++|++|++++|. +. ..|..++++++|++|++++|.....+| ..++.+++|+.
T Consensus 75 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 75 SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999 666665 59999999999999998 55 456789999999999999997666676 57999999999
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCC------
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRR------ 316 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~------ 316 (510)
|++..+... ......+..+++|+.+++..... ... ....+..+++|+.|++++|.............
T Consensus 153 L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~-~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 153 LEIKALSLR---NYQSQSLKSIRDIHHLTLHLSES-AFL---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEETTCC---EECTTTTTTCSEEEEEEEECSBS-TTH---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred eeccCCccc---ccChhhhhccccCceEecccCcc-ccc---chhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 999988765 33455667777788888775332 111 12223457888888888887544211000000
Q ss_pred --------CCcchhhHhhhccCC------------------------------C--------------------------
Q 010462 317 --------ENEEDEDERLLEALG------------------------------P-------------------------- 332 (510)
Q Consensus 317 --------~~~~~~~~~~~~~l~------------------------------~-------------------------- 332 (510)
...+.....+...+. .
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 000000111111111 1
Q ss_pred ---CCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC----CCCCCCccceeeccCccccEEecccccC
Q 010462 333 ---PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP----PLGKLPSLEYLEIEGMKSVKRVGNEFLG 405 (510)
Q Consensus 333 ---~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 405 (510)
.++|+.|++++|.... +|..++..+++|++|++++|...+.+| .++.+++|++|+|++|. ++.++.. +
T Consensus 306 ~~~~~~L~~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~ 380 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--G 380 (549)
T ss_dssp HHHSTTCCEEEEESSCCCC--CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--H
T ss_pred hhhcccceEEEeccCcccc--CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc--h
Confidence 1346666666666554 662233467777777777775544332 25667777777777765 3333210 0
Q ss_pred CCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 406 VESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
..+..+++|+.|+++++. ++. +|..+..+++|+.|++++|. ++.+|..+ .++|+.|++++|
T Consensus 381 -------~~~~~l~~L~~L~Ls~N~-l~~------lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 381 -------EILLTLKNLTSLDISRNT-FHP------MPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp -------HHGGGCTTCCEEECTTCC-CCC------CCSCCCCCTTCCEEECTTSC-CSCCCTTS--CTTCSEEECCSS
T ss_pred -------hhhhcCCCCCEEECCCCC-Ccc------CChhhcccccccEEECCCCC-cccccchh--cCCceEEECCCC
Confidence 002356777777777763 432 34445667778888887774 55666443 357888888777
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=248.04 Aligned_cols=349 Identities=14% Similarity=0.090 Sum_probs=215.9
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccc-ccccc-cccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTN-FIKKI-PTNI 162 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l-p~~i 162 (510)
+..+..+.....+|. + .+++++|++++|. +..+.|..|..+++|++|+++ +| .+..+ |..|
T Consensus 7 ~~~dcs~~~L~~vP~-l------p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-------~n~~~~~i~~~~f 69 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V------LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-------SQYTPLTIDKEAF 69 (844)
T ss_dssp EEEEESCCCSSCCCS-S------CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-------TTCCCCEECTTTT
T ss_pred eEEEccCCCCCCCCC-C------CCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-------CCCCccccCHHHh
Confidence 345566666666665 3 4789999999998 566567789999999999999 77 46677 7889
Q ss_pred cccCccceEeccCCCCccc-cchhhhcccccceeccCCCCccccCchh--hhccccCceeecCCCccccccc-ccccCcc
Q 010462 163 EKLLHLKYLSLFGQKKIEK-LPETLCELYNLERLNVDHCKNLRELPRG--IGKLRKLMYLHNEGTDSLRYLP-AGIGELI 238 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~ 238 (510)
.++++|++|+|++|. +.. .|.++.++++|++|+|++|......|.. +.++++|++|++++|......+ ..+++++
T Consensus 70 ~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 70 RNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred cCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 999999999999999 555 4889999999999999999955556665 8999999999999996654433 5689999
Q ss_pred cccccCcEEEeCccCCccCccccccc--ccCCCceecCcccCCChhhhhHhhccCCC------CCCeEEEEecCCCCCCc
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKL--NLLRDCRIRGLGDVSDAGEARRAELEKKK------SLLKLGLHFGHSRDGDE 310 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l--~~L~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~ 310 (510)
+|++|++..+.... .....+..+ ++|+.+++........ ....+..+. .|+.|+++.|.......
T Consensus 149 ~L~~L~Ls~N~i~~---~~~~~l~~l~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 149 SLKSIDFSSNQIFL---VCEHELEPLQGKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp SCCEEEEESSCCCC---CCSGGGHHHHHCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCEEECCCCcCCe---eCHHHcccccCCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 99999998776653 234455555 6788888876432211 111222222 48889988875322111
Q ss_pred ccccCCCC-------------------cchhhHhhhccCCC--CCCccEEEEeecCCccCCCchhHHhhhhcccceeccC
Q 010462 311 ERAGRREN-------------------EEDEDERLLEALGP--PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFG 369 (510)
Q Consensus 311 ~~~~~~~~-------------------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 369 (510)
........ ...........+.. +++|+.|++++|..... .| ..+..+++|+.|++++
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NS-RVFETLKDLKVLNLAY 299 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-CS-CCSSSCCCCCEEEEES
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc-Ch-hhhhcCCCCCEEECCC
Confidence 10000000 00000001111111 25666777766665541 23 4555666777777766
Q ss_pred ccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccC
Q 010462 370 WRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIM 448 (510)
Q Consensus 370 ~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 448 (510)
|......+. ++.+++|++|+|++|. +..+.... +..+++|+.|+++++. +..+ .+..+..+
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~l 361 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKNH-IAII-----QDQTFKFL 361 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSCC-CCCC-----CSSCSCSC
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCCC-CCcc-----ChhhhcCC
Confidence 654444443 6666677777776665 22221111 2355666666666553 3222 22334455
Q ss_pred cccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 449 PRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 449 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
++|+.|++++|. ++.++. +++|+.|++++|
T Consensus 362 ~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 362 EKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp CCCCEEEEETCC-SCCCSS----CCSCSEEEEESC
T ss_pred CCCCEEECCCCC-CCcccC----CCCcchhccCCC
Confidence 666666666653 333332 444455554444
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.6e-26 Score=226.02 Aligned_cols=255 Identities=17% Similarity=0.121 Sum_probs=172.8
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|++.++.+...+ .+. .+++|++|++++|. +.. +| +..+++|++|+++ +|.+..+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~----~l~~L~~L~Ls~n~---l~~-~~--~~~l~~L~~L~Ls-------~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIE----KLTGLTKLICTSNN---ITT-LD--LSQNTNLTYLACD-------SNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGG----GCTTCSEEECCSSC---CSC-CC--CTTCTTCSEEECC-------SSCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-hhc----ccCCCCEEEccCCc---CCe-Ec--cccCCCCCEEECc-------CCCCceee--
Confidence 67888888888776554 333 78888888888887 333 23 7778888888888 77777775
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++++|++|++++|. ++.+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7788888888888887 66675 7788888888888887 55564 778888888888888655555 367778888
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +. +..+++|+.+++.+..- ... .+..+++|+.|++++|...
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~--------------- 225 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT--------------- 225 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS---------------
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCccc---------------
Confidence 88877765543 11 55666677777665321 111 3566778888888777511
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhh-------cccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLT-------NLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~-------~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
. ++ +..+++|+.|++++|.... +|...+..++ +|+.|++++|...+.+| .+.+++|+.|++++|.
T Consensus 226 --~-ip--~~~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 226 --E-ID--VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT 297 (457)
T ss_dssp --C-CC--CTTCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred --c-cC--ccccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence 1 22 5667788888888887766 4422222222 34455555555444444 4567777777777777
Q ss_pred ccEEec
Q 010462 395 SVKRVG 400 (510)
Q Consensus 395 ~l~~~~ 400 (510)
.+..++
T Consensus 298 ~l~~l~ 303 (457)
T 3bz5_A 298 QLYLLD 303 (457)
T ss_dssp TCCEEE
T ss_pred ccceec
Confidence 666554
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=5.4e-26 Score=238.74 Aligned_cols=269 Identities=17% Similarity=0.095 Sum_probs=183.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.++..+.....+|..+. +++++|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..++
T Consensus 7 ~~~~cs~~~L~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP------TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVG-------FNTISKLEPELCQ 70 (680)
T ss_dssp SEEECCSSCCSSCCSCSC------TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECC-------SSCCCCCCTTHHH
T ss_pred CeeECCCCCccccccccC------CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECC-------CCccCccCHHHHh
Confidence 345666666666666543 789999999998 556567779999999999999 8888877 67889
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccccccCccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++|++|++++|. +..+|. .+.++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|+
T Consensus 71 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 71 KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred cccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 99999999999998 888886 59999999999999998 55555 6799999999999999977666777889999999
Q ss_pred ccCcEEEeCccCCccCcccc--cccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 242 SVRKFVVGGGYDRACSLGSL--KKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l--~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
.|++..+.... .....+ ..+++|+.+++.+... . ...+..+..+.+|+.+.+..+...
T Consensus 149 ~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~L~~n~l-~---~~~~~~~~~l~~L~~L~l~~~~l~------------- 208 (680)
T 1ziw_A 149 ELLLSNNKIQA---LKSEELDIFANSSLKKLELSSNQI-K---EFSPGCFHAIGRLFGLFLNNVQLG------------- 208 (680)
T ss_dssp EEECCSSCCCC---BCHHHHGGGTTCEESEEECTTCCC-C---CBCTTGGGGSSEECEEECTTCCCH-------------
T ss_pred EEEccCCcccc---cCHHHhhccccccccEEECCCCcc-c---ccChhhhhhhhhhhhhhccccccC-------------
Confidence 99988776543 122222 2346778887775321 1 122334555666777666554310
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhc--ccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTN--LRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~--L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
..........+ ..++|+.|++++|..... .| .++..++. |+.|++++|......+. ++.+++|++|++++|.
T Consensus 209 ~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~-~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 209 PSLTEKLCLEL-ANTSIRNLSLSNSQLSTT-SN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHHHH-TTSCCCEEECTTSCCCEE-CT-TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhhHHHHHHHh-hhccccEEEccCCccccc-Ch-hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 00111111111 235666666666655441 23 45555443 66666666644433333 5666666666666654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5e-26 Score=227.59 Aligned_cols=311 Identities=20% Similarity=0.240 Sum_probs=205.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++++.|.+.++. +.. +|. +..+++|++|+++ ++.+..+|. +.++++|++|++++|. +..++. +
T Consensus 44 ~l~~l~~L~l~~~~---i~~-l~~-~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCC---Ccc-Ccc-hhhhcCCCEEECC-------CCccCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 57899999999997 444 454 8889999999999 999999877 8999999999999999 888877 9
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++++|++|++++|. +..+|. +.++++|++|++++|. +..++ .++.+++|+.|.+.. ... ....+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~-----~~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVT-----DLKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCC-----CCGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-ccc-----CchhhccCCC
Confidence 999999999999998 777776 9999999999999995 45555 488899999998852 222 3344788889
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.|++.+... ... ..+..+++|+.|++++|....... +..+++|+.|++++|..
T Consensus 179 L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~-------------------~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 179 LERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDITP-------------------LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGG-------------------GGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCccccccc-------------------ccccCCCCEEECCCCCc
Confidence 99999887532 221 246778899999998886322111 23344555555555554
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCC----------CCCCCCCccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV----------ESDTDGSSVI 416 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~----------~~~~~~~~~~ 416 (510)
.. ++ .+..+++|+.|++++|... .++.+..+++|++|++++|. +..++. +... ........+.
T Consensus 234 ~~--~~--~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 306 (466)
T 1o6v_A 234 KD--IG--TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPIS 306 (466)
T ss_dssp CC--CG--GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGG
T ss_pred cc--ch--hhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhc
Confidence 43 33 3344555555555555322 22224444445555544443 211111 0000 0000000133
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
.+++|+.|++++|. +... .| +..+++|+.|++++| .+..++ .+..+++|+.|++++|+
T Consensus 307 ~l~~L~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN-ISDI-----SP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCSEEECCSSC-CSCC-----GG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCc-CCCc-----hh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 56666666666653 3322 12 357788888888888 445554 56778888888888885
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=228.37 Aligned_cols=297 Identities=20% Similarity=0.127 Sum_probs=232.0
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|++.++.+...+ ..+. .+++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA----SFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-------SNRLKLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT----TCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCSCCT
T ss_pred CCCcEEECCCCccceECHhHcc----CCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-------CCcCCccCc
Confidence 78999999999887643 3444 99999999999998 666578889999999999999 999999975
Q ss_pred -cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.+.++++|++|++++|.+....|..+.++++|++|++++|......|..+..+++|++|++++|......+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 4788999999999999944445678999999999999999955555678999999999999999554433455889999
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... .....+..+++|+.|++.++...... ........+|+.|++++|....
T Consensus 178 L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~------------ 238 (477)
T 2id5_A 178 LIVLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTA------------ 238 (477)
T ss_dssp CCEEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCS------------
T ss_pred CcEEeCCCCcCcE---eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccc------------
Confidence 9999998876653 23345677888999998875443322 1222334589999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
.....+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......|. +..+++|+.|+|++|. ++.
T Consensus 239 -----~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 310 (477)
T 2id5_A 239 -----VPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310 (477)
T ss_dssp -----CCHHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSC
T ss_pred -----cCHHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Cce
Confidence 112346678999999999999876 5536678899999999999976665554 8899999999999986 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMN 430 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 430 (510)
++... +..+++|+.|++++++
T Consensus 311 ~~~~~-----------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 311 LEESV-----------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCGGG-----------BSCGGGCCEEECCSSC
T ss_pred eCHhH-----------cCCCcccCEEEccCCC
Confidence 55433 2468899999998765
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=7.7e-26 Score=221.07 Aligned_cols=305 Identities=15% Similarity=0.089 Sum_probs=235.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~ 160 (510)
..++++++.++.+..++..+. ..+++|++|++++|. +..+.+..|..+++|++|+++ ++.+..+ |.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-------CCCCCcCCHH
Confidence 788999999998887665532 389999999999998 556566679999999999999 9998888 46
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.++++++|++|++++|. ++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.. ..+ .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccc
Confidence 68899999999999999 8888876 58899999999999994444456689999999999999954 333 3667888
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+... .+.....|+.+++.+... ... .....++|+.|++++|....
T Consensus 188 L~~L~l~~n~l~--------~~~~~~~L~~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~~------------ 240 (390)
T 3o6n_A 188 LFHANVSYNLLS--------TLAIPIAVEELDASHNSI-NVV------RGPVNVELTILKLQHNNLTD------------ 240 (390)
T ss_dssp CSEEECCSSCCS--------EEECCSSCSEEECCSSCC-CEE------ECCCCSSCCEEECCSSCCCC------------
T ss_pred cceeeccccccc--------ccCCCCcceEEECCCCee-eec------cccccccccEEECCCCCCcc------------
Confidence 888887655333 334445677777765321 111 11234789999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
...+..+++|++|++++|..... .| ..+..+++|++|++++|... .++. ...+++|++|+|++|. +..
T Consensus 241 -------~~~l~~l~~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~-l~~ 309 (390)
T 3o6n_A 241 -------TAWLLNYPGLVEVDLSYNELEKI-MY-HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLH 309 (390)
T ss_dssp -------CGGGGGCTTCSEEECCSSCCCEE-ES-GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSC-CCC
T ss_pred -------cHHHcCCCCccEEECCCCcCCCc-Ch-hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCc-cee
Confidence 13567789999999999988762 35 78889999999999999554 4444 6789999999999986 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
++.. +..+++|+.|++++++ ++.+. +..+++|+.|++++|+.-
T Consensus 310 ~~~~------------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 310 VERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CGGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred cCcc------------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 5433 3478999999999986 55543 357899999999999764
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=5.7e-25 Score=229.31 Aligned_cols=371 Identities=16% Similarity=0.089 Sum_probs=237.1
Q ss_pred CCceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 81 ETKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 81 ~~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
+..+++|++.++.+..++. .+. ++++|++|++++|+ +..+.+.+|..+++|++|+|+ +|.+..+|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~----~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-------~N~l~~l~ 116 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLA 116 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEEC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHh----CCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-------CCcCCCCC
Confidence 3789999999999887553 444 99999999999998 666677789999999999999 99999996
Q ss_pred -ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccC
Q 010462 160 -TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 -~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..|.++.+|++|++++|. ++.+|. .++++++|++|++++|.... ..|..++.+++|++|++++|......|..+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 468899999999999999 777775 58999999999999998332 46788899999999999998543333333332
Q ss_pred cccccccCc---------------------------E-------------------------EEeCcc------CCc---
Q 010462 237 LIRLRSVRK---------------------------F-------------------------VVGGGY------DRA--- 255 (510)
Q Consensus 237 l~~L~~L~l---------------------------~-------------------------~~~~~~------~~~--- 255 (510)
+.+++.+.. . ...... ...
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 222211100 0 000000 000
Q ss_pred ---------------------c----------------------CcccccccccCCCceecCccc--CCCh---------
Q 010462 256 ---------------------C----------------------SLGSLKKLNLLRDCRIRGLGD--VSDA--------- 281 (510)
Q Consensus 256 ---------------------~----------------------~~~~l~~l~~L~~l~i~~~~~--~~~~--------- 281 (510)
. .+..+.....++.+.+.++.. +...
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 0 000011111222233222110 0000
Q ss_pred ----hhhhHhhccCCCCCCeEEEEecCCCCCCccc---ccC-----------------------CC-------CcchhhH
Q 010462 282 ----GEARRAELEKKKSLLKLGLHFGHSRDGDEER---AGR-----------------------RE-------NEEDEDE 324 (510)
Q Consensus 282 ----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~-----------------------~~-------~~~~~~~ 324 (510)
..........+++|+.++++.+......... ... .. .......
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 0000011223556666666655432110000 000 00 0000001
Q ss_pred hhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc-CCC-CCCCCccceeeccCccccEEeccc
Q 010462 325 RLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH-LPP-LGKLPSLEYLEIEGMKSVKRVGNE 402 (510)
Q Consensus 325 ~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~-l~~-~~~l~~L~~L~L~~~~~l~~~~~~ 402 (510)
.....+..+++++.++++++.... .+...+..+++|+.|++++|..... .|. +..+++|++|+|++|. ++.++..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~ 512 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 512 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT
T ss_pred cccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH
Confidence 112234556677778877777665 3325666788999999998865553 444 8889999999999987 6666443
Q ss_pred ccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCC-CCCcEEEEc
Q 010462 403 FLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQK-TTLQKLHIR 481 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~ 481 (510)
. +..+++|+.|+++++. ++.+ .+..+..+++|+.|++++|......|..+..+ ++|+.|+++
T Consensus 513 ~-----------f~~l~~L~~L~Ls~N~-l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 513 A-----------FNSLSSLQVLNMSHNN-FFSL-----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp T-----------TTTCTTCCEEECTTSC-CCBC-----CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred H-----------HcCCCCCCEEECCCCc-CCCC-----ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 2 3478999999998874 4443 35556789999999999997655566677777 689999999
Q ss_pred CCcch
Q 010462 482 RCPIL 486 (510)
Q Consensus 482 ~c~~l 486 (510)
+||.-
T Consensus 576 ~Np~~ 580 (635)
T 4g8a_A 576 QNDFA 580 (635)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 98853
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=229.69 Aligned_cols=305 Identities=15% Similarity=0.087 Sum_probs=235.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.+.+.++.+..+|..+. ..+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+| .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-------CCcCCCCCHH
Confidence 678899999888777665542 379999999999998 556567679999999999999 99988885 5
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.|+++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|.. ..++ ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhh
Confidence 57899999999999999 8888876 58999999999999995555566799999999999999954 4443 566788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.. ..+.....|+.|++.+... .... ....++|+.|++++|....
T Consensus 194 L~~L~l~~n~l--------~~l~~~~~L~~L~ls~n~l-~~~~------~~~~~~L~~L~L~~n~l~~------------ 246 (597)
T 3oja_B 194 LFHANVSYNLL--------STLAIPIAVEELDASHNSI-NVVR------GPVNVELTILKLQHNNLTD------------ 246 (597)
T ss_dssp CSEEECCSSCC--------SEEECCTTCSEEECCSSCC-CEEE------CSCCSCCCEEECCSSCCCC------------
T ss_pred hhhhhcccCcc--------ccccCCchhheeeccCCcc-cccc------cccCCCCCEEECCCCCCCC------------
Confidence 88888765433 3344455677777765321 1111 1123689999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
+..+..+++|+.|++++|.+... .| ..+..+++|+.|+|++|.... +|. .+.+++|+.|+|++|. +..
T Consensus 247 -------~~~l~~l~~L~~L~Ls~N~l~~~-~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~ 315 (597)
T 3oja_B 247 -------TAWLLNYPGLVEVDLSYNELEKI-MY-HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLH 315 (597)
T ss_dssp -------CGGGGGCTTCSEEECCSSCCCEE-ES-GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCC
T ss_pred -------ChhhccCCCCCEEECCCCccCCC-CH-HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCc
Confidence 24567789999999999998762 35 788899999999999995544 454 7789999999999987 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
++.. +..+++|+.|+++++. +..+. +..+++|+.|++++|+..
T Consensus 316 i~~~------------~~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 316 VERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CGGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred cCcc------------cccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCC
Confidence 5433 3478999999999986 55442 357899999999999764
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.1e-24 Score=206.97 Aligned_cols=232 Identities=22% Similarity=0.285 Sum_probs=164.0
Q ss_pred cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcc
Q 010462 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKL 213 (510)
Q Consensus 134 ~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 213 (510)
...++++|+++ ++.+..+|..++++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++++
T Consensus 79 ~~~~l~~L~L~-------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR-------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE-------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc-------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 35789999999 88888999889999999999999998 77899889999999999999998 66889889999
Q ss_pred ccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCC
Q 010462 214 RKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
++|++|++++|.....+|..++... .. ..+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~------------------~~----------------------------~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD------------------AS----------------------------GEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-------------------C----------------------------CCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc------------------ch----------------------------hhhccCC
Confidence 9999999999877777776543210 00 0123345
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC 373 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 373 (510)
+|+.|++++|.. . .++..+..+++|++|++++|.+.. +| ..+..+++|++|++++|...
T Consensus 184 ~L~~L~L~~n~l-----------------~-~lp~~l~~l~~L~~L~L~~N~l~~--l~-~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 184 NLQSLRLEWTGI-----------------R-SLPASIANLQNLKSLKIRNSPLSA--LG-PAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp TCCEEEEEEECC-----------------C-CCCGGGGGCTTCCEEEEESSCCCC--CC-GGGGGCTTCCEEECTTCTTC
T ss_pred CCCEEECcCCCc-----------------C-cchHhhcCCCCCCEEEccCCCCCc--Cc-hhhccCCCCCEEECcCCcch
Confidence 566666666641 1 233445556677777777776665 66 55666677777777776666
Q ss_pred CcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 374 EHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 374 ~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
+.+|. ++.+++|++|+|++|.... .+|..+..+++|+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~------------------------------------------~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLL------------------------------------------TLPLDIHRLTQLE 280 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCC------------------------------------------BCCTTGGGCTTCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchh------------------------------------------hcchhhhcCCCCC
Confidence 65554 5556666666666554222 2233345677888
Q ss_pred eeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 453 SLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 453 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
.|+|++|+.++.+|..+.++++|+.+++..+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8888888777888888888888888877643
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.5e-25 Score=217.78 Aligned_cols=299 Identities=20% Similarity=0.184 Sum_probs=228.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
++++|++|++++|. +.+ +| .+..+++|++|+++ ++.+..+| ++.+++|++|++++|. ++.+| +
T Consensus 40 ~l~~L~~L~Ls~n~---l~~-~~-~l~~l~~L~~L~Ls-------~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSS---ITD-MT-GIEKLTGLTKLICT-------SNNITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSC---CCC-CT-TGGGCTTCSEEECC-------SSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCC---ccc-Ch-hhcccCCCCEEEcc-------CCcCCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 89999999999998 444 35 48999999999999 99998886 8899999999999999 77776 8
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
+++++|++|++++|. +..+| ++.+++|++|++++|.. ..++ ++.+++|+.|++..+.... .+ .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccc----cc-ccccCCc
Confidence 899999999999998 66776 89999999999999954 4453 7889999999987774432 11 4667788
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.|++.+..- ... .+..+++|+.|++++|... . . .+..+++|+.|++++|.+
T Consensus 172 L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~-----------------~-~--~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 172 LTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNIT-----------------K-L--DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCS-----------------C-C--CCTTCTTCSEEECCSSCC
T ss_pred CCEEECCCCcc-cee------ccccCCCCCEEECcCCcCC-----------------e-e--ccccCCCCCEEECcCCcc
Confidence 88888876422 221 2677899999999988622 1 1 367789999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceee----------ccCccccEEecccccCCCCCCCCCccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLE----------IEGMKSVKRVGNEFLGVESDTDGSSVI 416 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~----------L~~~~~l~~~~~~~~~~~~~~~~~~~~ 416 (510)
.. +| +..+++|+.|++++|.... +| .+.+++|+.|+ +++|..+..++ ..
T Consensus 225 ~~--ip---~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------~~ 283 (457)
T 3bz5_A 225 TE--ID---VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------AE 283 (457)
T ss_dssp SC--CC---CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------CT
T ss_pred cc--cC---ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------cc
Confidence 87 77 4688999999999995544 43 44555555554 44444333332 34
Q ss_pred cccccccccccccccccccccccc--cccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETA--IKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
.+++|+.|++++|+.+..+..... ..-.+..+++|+.|++++|. ++.++ +..+++|+.|++++|.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 789999999999986655542110 00124567899999999884 56664 7889999999999985
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=8.9e-25 Score=206.32 Aligned_cols=248 Identities=19% Similarity=0.151 Sum_probs=166.4
Q ss_pred CceeEEEEEeecCCC---ccccccccccCCCCccEEEecc-CCcCccccchhHhhhcCCceeEEEeccccccccccccc-
Q 010462 82 TKILHLMLTLHRGAS---VPIPIWDNVKGLRGLRSLLVES-GEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK- 156 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 156 (510)
.++++|++.++.+.. .+..+. ++++|++|++++ |. +...+|..|..+++|++|+++ +|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-------~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-------HTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-------EECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-------CCeeCC
Confidence 467778887777652 344343 778888888874 65 443466667778888888887 77765
Q ss_pred cccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc-cCceeecCCCccccccccccc
Q 010462 157 KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR-KLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 157 ~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l~ 235 (510)
.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.....+|..++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 5677777788888888888873336777777888888888888774447777777777 788888887765556666666
Q ss_pred CcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccC
Q 010462 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGR 315 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 315 (510)
.++ |+.|++..+.... ..+..+..+++|+.|++++|..
T Consensus 196 ~l~-L~~L~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~l---------- 233 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEG-------------------------------DASVLFGSDKNTQKIHLAKNSL---------- 233 (313)
T ss_dssp GCC-CSEEECCSSEEEE-------------------------------CCGGGCCTTSCCSEEECCSSEE----------
T ss_pred CCc-ccEEECcCCcccC-------------------------------cCCHHHhcCCCCCEEECCCCce----------
Confidence 654 6665554433221 1122344556667777766641
Q ss_pred CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccc
Q 010462 316 RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~ 395 (510)
. ..+..+..+++|++|++++|.+... +| .++..+++|++|++++|...+.+|..+.+++|+.|++.+|+.
T Consensus 234 -------~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 234 -------A-FDLGKVGLSKNLNGLDLRNNRIYGT-LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -------C-CBGGGCCCCTTCCEEECCSSCCEEC-CC-GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred -------e-eecCcccccCCCCEEECcCCcccCc-CC-hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 1 1122255667788888888777632 66 677778888888888887666777777777777777777763
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3e-24 Score=204.77 Aligned_cols=243 Identities=19% Similarity=0.172 Sum_probs=137.6
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTN 161 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~ 161 (510)
.++.+.+.++....+|..+ .++++.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILI-------NNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-------SSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECC-------CCcCCeeCHHH
Confidence 3445555555555444433 2566677777766 444344456667777777776 6666665 566
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccc--cccccccCcc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLR--YLPAGIGELI 238 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~ 238 (510)
+.++++|++|++++|. ++.+|..+. ++|++|++++|. +..++ ..+.++++|++|++++|.... ..+..++.++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 6667777777777766 666665443 567777777766 33333 345666777777776664321 3334445555
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|+.|++..+.... ++. .+ .++|+.|++++|.
T Consensus 172 ~L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~-------------- 203 (330)
T 1xku_A 172 KLSYIRIADTNITT-------------------------IPQ-------GL--PPSLTELHLDGNK-------------- 203 (330)
T ss_dssp TCCEEECCSSCCCS-------------------------CCS-------SC--CTTCSEEECTTSC--------------
T ss_pred CcCEEECCCCcccc-------------------------CCc-------cc--cccCCEEECCCCc--------------
Confidence 55555443322211 000 00 1456666666554
Q ss_pred cchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccE
Q 010462 319 EEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~ 397 (510)
.....+..+..+++|+.|++++|.... ++..++..+++|++|++++|... .+|. +..+++|++|++++|. ++
T Consensus 204 ---l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~ 276 (330)
T 1xku_A 204 ---ITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-IS 276 (330)
T ss_dssp ---CCEECTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CC
T ss_pred ---CCccCHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CC
Confidence 112223445566777777777776655 43245667777777777777433 4443 6677777777777765 44
Q ss_pred Eec
Q 010462 398 RVG 400 (510)
Q Consensus 398 ~~~ 400 (510)
.++
T Consensus 277 ~~~ 279 (330)
T 1xku_A 277 AIG 279 (330)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.5e-24 Score=205.48 Aligned_cols=236 Identities=21% Similarity=0.220 Sum_probs=130.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
++.+.+.++.+..+|..+ .++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..+
T Consensus 35 l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI------SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLV-------NNKISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSCC------CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECGGGS
T ss_pred CCEEECCCCCccccCCCC------CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECC-------CCccCccCHhHh
Confidence 455555555555444433 2566777777765 444345556667777777776 6666665 5566
Q ss_pred cccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCccc--ccccccccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSL--RYLPAGIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~ 239 (510)
+++++|++|++++|. ++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..++.+ +
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 667777777777766 666665544 567777777766 444443 3566677777777666432 1333334444 4
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... ++ ..+ .++|+.|++++|..
T Consensus 174 L~~L~l~~n~l~~-------------------------l~-------~~~--~~~L~~L~l~~n~i-------------- 205 (332)
T 2ft3_A 174 LNYLRISEAKLTG-------------------------IP-------KDL--PETLNELHLDHNKI-------------- 205 (332)
T ss_dssp CSCCBCCSSBCSS-------------------------CC-------SSS--CSSCSCCBCCSSCC--------------
T ss_pred cCEEECcCCCCCc-------------------------cC-------ccc--cCCCCEEECCCCcC--------------
Confidence 4544443332221 00 000 13455555555541
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
....+..+..+++|+.|++++|.... ++..++..+++|++|++++|... .+|. ++.+++|++|++++|.
T Consensus 206 ---~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 206 ---QAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp ---CCCCTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred ---CccCHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 11122345556666666666666555 43245566666666766666333 4444 5666666666666654
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=3e-24 Score=223.88 Aligned_cols=146 Identities=21% Similarity=0.143 Sum_probs=121.4
Q ss_pred EEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccC
Q 010462 88 MLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLL 166 (510)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~ 166 (510)
+..+.+...+|..++ +.++.|+|++|. +..+.+..|..+++|++|+|+ +|.+..+| ..|.+++
T Consensus 37 ~c~~~~l~~vP~~lp------~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls-------~N~i~~i~~~~f~~L~ 100 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLS 100 (635)
T ss_dssp ECTTSCCSSCCSSSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTTTCT
T ss_pred ECCCCCcCccCCCCC------cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECC-------CCcCCCcChhHhcCCC
Confidence 333445566676654 589999999998 666667789999999999999 99999995 5689999
Q ss_pred ccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCccccccc
Q 010462 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLRSV 243 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L 243 (510)
+|++|+|++|+ ++.+|. .|.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|
T Consensus 101 ~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 101 HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp TCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 99999999999 888875 58999999999999998 667765 48999999999999996533 467788999999999
Q ss_pred CcEEEeCc
Q 010462 244 RKFVVGGG 251 (510)
Q Consensus 244 ~l~~~~~~ 251 (510)
++..+...
T Consensus 179 ~L~~N~l~ 186 (635)
T 4g8a_A 179 DLSSNKIQ 186 (635)
T ss_dssp ECCSSCCC
T ss_pred cccCcccc
Confidence 98876554
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.6e-24 Score=204.53 Aligned_cols=224 Identities=19% Similarity=0.140 Sum_probs=158.6
Q ss_pred CCccEEEeccCCcCcccc--chhHhhhcCCceeEEEeccccccccc-cccc-cccccccccCccceEeccCCCCccccch
Q 010462 109 RGLRSLLVESGEYSWSNE--ILPQLFDKLTCLRALKLEVREQGLYT-NFIK-KIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
.+++.|++++|. +.. .+|..|..+++|++|+++ + +.+. .+|..++++++|++|++++|.+.+.+|.
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~-------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEE-------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCC-------CCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 689999999998 433 367779999999999998 5 5544 6799999999999999999994448899
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcc-cccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELI-RLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.+. +|+.|++..+.... ...
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---~~~----- 191 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---KIP----- 191 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---ECC-----
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---cCC-----
Confidence 999999999999999995558999999999999999999976668888888877 77777765443321 011
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
..+..+. |+.|++++|. .....+..+..+++|+.|++++
T Consensus 192 -----------------------~~~~~l~-L~~L~Ls~N~-----------------l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 192 -----------------------PTFANLN-LAFVDLSRNM-----------------LEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp -----------------------GGGGGCC-CSEEECCSSE-----------------EEECCGGGCCTTSCCSEEECCS
T ss_pred -----------------------hHHhCCc-ccEEECcCCc-----------------ccCcCCHHHhcCCCCCEEECCC
Confidence 1122222 5666666554 2223344555666666666666
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
|.... .+ ..+..+++|++|++++|...+.+|. ++.+++|++|+|++|.
T Consensus 231 N~l~~--~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 231 NSLAF--DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SEECC--BG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred Cceee--ec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 66554 22 2344566666666666655444544 5666666666666655
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.2e-24 Score=204.86 Aligned_cols=222 Identities=23% Similarity=0.294 Sum_probs=156.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
..++++.|++++|. +.. +|..+..+++|++|+++ +|.+..+|..++++++|++|++++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~---l~~-lp~~l~~l~~L~~L~L~-------~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVP---LPQ-FPDQAFRLSHLQHMTID-------AAGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSC---CSS-CCSCGGGGTTCSEEEEE-------SSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCC---chh-cChhhhhCCCCCEEECC-------CCCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 45788899999887 444 55557778999999998 88888888888889999999999998 77888889
Q ss_pred hcccccceeccCCCCccccCchhhhc---------cccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccC
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGK---------LRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
.++++|++|++++|..+..+|..+.. +++|++|++++|. +..+|..++.+++|+.|++..+.... .
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~----l 221 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA----L 221 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC----C
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc----C
Confidence 99999999999988878888877654 7777777777773 34666666666666666665443321 1
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCcc
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLK 337 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 337 (510)
.. .+..+++|+.|++++|. ....++..+..+++|+
T Consensus 222 ~~----------------------------~l~~l~~L~~L~Ls~n~-----------------~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 222 GP----------------------------AIHHLPKLEELDLRGCT-----------------ALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CG----------------------------GGGGCTTCCEEECTTCT-----------------TCCBCCCCTTCCCCCC
T ss_pred ch----------------------------hhccCCCCCEEECcCCc-----------------chhhhHHHhcCCCCCC
Confidence 11 23334455555555544 2233445566677777
Q ss_pred EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccC
Q 010462 338 KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEG 392 (510)
Q Consensus 338 ~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~ 392 (510)
.|++++|..... +| .++..+++|++|+|++|...+.+|. ++.+++|+.+.+..
T Consensus 257 ~L~L~~n~~~~~-~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 257 RLILKDCSNLLT-LP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCB-CC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECCCCCchhh-cc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777777665543 56 5667777777777777777777766 77777777777664
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.5e-24 Score=203.08 Aligned_cols=291 Identities=16% Similarity=0.176 Sum_probs=195.1
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCcccc-chhhh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+++.++++++. +.. +|..+ .++|++|+++ ++.+..+ |..+.++++|++|++++|. +..+ |..+.
T Consensus 34 ~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLG---LKA-VPKEI--SPDTTLLDLQ-------NNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCC---ccc-cCCCC--CCCCeEEECC-------CCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 68888888876 333 34323 3678888888 8888777 4578888888999988888 5555 67788
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
++++|++|++++|. +..+|..+. ++|++|++++|.. ..+| ..++.+++|+.|++..+..... +...
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-------- 166 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENS-GFEP-------- 166 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGG-GSCT--------
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccC-CCCc--------
Confidence 88889999988887 677887665 7888888888854 3444 3477778888877765544310 0011
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
..+..+ +|+.|++++|... .++..+ .++|++|++++|..
T Consensus 167 --------------------~~~~~l-~L~~L~l~~n~l~------------------~l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 167 --------------------GAFDGL-KLNYLRISEAKLT------------------GIPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp --------------------TSSCSC-CCSCCBCCSSBCS------------------SCCSSS--CSSCSCCBCCSSCC
T ss_pred --------------------ccccCC-ccCEEECcCCCCC------------------ccCccc--cCCCCEEECCCCcC
Confidence 122223 5666666666421 122222 26889999999888
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLT 425 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 425 (510)
.. ++...+..+++|+.|++++|......+. ++.+++|++|++++|. +..+|.. +..+++|+.|+
T Consensus 206 ~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~ 270 (332)
T 2ft3_A 206 QA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVY 270 (332)
T ss_dssp CC--CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEE
T ss_pred Cc--cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEE
Confidence 76 4435677889999999999865554443 7888999999999886 5555443 34788999999
Q ss_pred cccccccccccccccccccc-ccCcccceeeeccCccc--ccCCcccCCCCCCcEEEEcCCc
Q 010462 426 FWVMNALEELDFETAIKREI-IIMPRLSSLTIWSCRKL--KALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 426 l~~~~~L~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
+++++ ++.+......+..+ ..+++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 271 l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88875 55543221111000 12578899999999765 3455567778999999998875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.2e-23 Score=200.54 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=184.4
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccccCccceEeccCCCCcccc-chhhh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+++.++++++. ... +|..+ .+.|++|+++ ++.+..++. .+.++++|++|++++|. +..+ |..+.
T Consensus 32 ~l~~l~~~~~~---l~~-lp~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG---LEK-VPKDL--PPDTALLDLQ-------NNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC---CCS-CCCSC--CTTCCEEECC-------SSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCC---ccc-cCccC--CCCCeEEECC-------CCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 67777777765 333 33222 2577888887 777777754 67778888888888887 5554 66777
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccC
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLL 267 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 267 (510)
++++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|+.|++..+....
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 159 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------------- 159 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---------------
Confidence 88888888888877 667776554 678888887775433333446666666666655433221
Q ss_pred CCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCc
Q 010462 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347 (510)
Q Consensus 268 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (510)
.......+..+++|+.|++++|... .++..+ .++|++|++++|...
T Consensus 160 --------------~~~~~~~~~~l~~L~~L~l~~n~l~------------------~l~~~~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 160 --------------SGIENGAFQGMKKLSYIRIADTNIT------------------TIPQGL--PPSLTELHLDGNKIT 205 (330)
T ss_dssp --------------GGBCTTGGGGCTTCCEEECCSSCCC------------------SCCSSC--CTTCSEEECTTSCCC
T ss_pred --------------cCcChhhccCCCCcCEEECCCCccc------------------cCCccc--cccCCEEECCCCcCC
Confidence 0011234455677777777777522 112222 268888888888876
Q ss_pred cCCCchhHHhhhhcccceeccCccCCCcCC-CCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccc
Q 010462 348 RNVVPISWFMSLTNLRFLFLFGWRNCEHLP-PLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTF 426 (510)
Q Consensus 348 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 426 (510)
. ++...+..+++|++|++++|......+ .++.+++|++|+|++|. +..++.. +..+++|++|++
T Consensus 206 ~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l 270 (330)
T 1xku_A 206 K--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVYL 270 (330)
T ss_dssp E--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEEC
T ss_pred c--cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCEEEC
Confidence 6 432677788888888888886554444 37788888888888876 4444332 236788888888
Q ss_pred ccccccccccccccccc-ccccCcccceeeeccCcccc--cCCcccCCCCCCcEEEEcCC
Q 010462 427 WVMNALEELDFETAIKR-EIIIMPRLSSLTIWSCRKLK--ALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 427 ~~~~~L~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 483 (510)
++++ ++.+......+. .....++|+.|++.+|+... ..|..+..+++++.+++++|
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 8775 554432211100 01134778888888887532 23456666788888888876
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.4e-25 Score=224.62 Aligned_cols=366 Identities=16% Similarity=0.064 Sum_probs=234.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
+++++|++.++.+.... ....+..+++|++|++++|.+.... ..++..+..+++|++|+++ ++.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-------CCcCChHHH
Confidence 67889999888776422 2212348899999999999842211 1256778889999999999 7776553 3
Q ss_pred cccc-ccC----ccceEeccCCCCcc-----ccchhhhcccccceeccCCCCccccCchhhh-----ccccCceeecCCC
Q 010462 160 TNIE-KLL----HLKYLSLFGQKKIE-----KLPETLCELYNLERLNVDHCKNLRELPRGIG-----KLRKLMYLHNEGT 224 (510)
Q Consensus 160 ~~i~-~l~----~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~-----~l~~L~~L~l~~~ 224 (510)
..+. .+. +|++|++++|. ++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 3333 244 69999999998 65 4678888999999999999983333233332 2567999999999
Q ss_pred cccc----cccccccCcccccccCcEEEeCccCCccCccccc-----ccccCCCceecCcccCCChhhhhHhhccCCCCC
Q 010462 225 DSLR----YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLK-----KLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295 (510)
Q Consensus 225 ~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 295 (510)
.... .++..+..+++|++|++..+.... ..+..+. ..++|+.|++.++.-...........+..+++|
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 5543 235556778899999988776542 1122222 244788888887644333333455667788999
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhc-cCCCCCCccEEEEeecCCccCC---CchhHHhhhhcccceeccCcc
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLE-ALGPPPNLKKLRIDEYRGRRNV---VPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~---~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+.|++++|... ......+.. ....+++|++|++++|...... ++ ..+..+++|++|++++|.
T Consensus 230 ~~L~Ls~n~l~-------------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 230 RELALGSNKLG-------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CEEECCSSBCH-------------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCC
T ss_pred cEEeccCCcCC-------------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCC
Confidence 99999988611 111122222 2345789999999998765411 23 445578899999999885
Q ss_pred CCCc----CCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccccccc
Q 010462 372 NCEH----LPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREI 445 (510)
Q Consensus 372 ~~~~----l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 445 (510)
.... +.. ....++|++|++++|. +...+..... ..+..+++|++|+++++. +...... .+...+
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l 365 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNNR-LEDAGVR-ELCQGL 365 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHH
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCCc-cccccHH-HHHHHH
Confidence 4321 111 2234689999999886 3221100000 012356888888888774 4332111 011111
Q ss_pred c-cCcccceeeeccCcccc----cCCcccCCCCCCcEEEEcCCc
Q 010462 446 I-IMPRLSSLTIWSCRKLK----ALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 446 ~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~ 484 (510)
. ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 26789999998885432 567777778889999998885
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=194.23 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=144.9
Q ss_pred ceeEEEeccccccccccccccccc-cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchh-hhcc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRG-IGKL 213 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l 213 (510)
+|++|+++ ++.+..+|. .+.++++|++|++++|. ++.+ |..+.++++|++|++++|. +..+|.. +.++
T Consensus 53 ~L~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (353)
T 2z80_A 53 AVKSLDLS-------NNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL 123 (353)
T ss_dssp TCCEEECT-------TSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC
T ss_pred cCcEEECC-------CCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC
Confidence 56666666 555555543 55566666666666665 4443 3446666666666666665 4445544 5566
Q ss_pred ccCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccC
Q 010462 214 RKLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~ 291 (510)
++|++|++++|. +..+|. .++.+++|+.|++..+.... . .....+..
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~--~----------------------------~~~~~~~~ 172 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT--K----------------------------IQRKDFAG 172 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC--E----------------------------ECTTTTTT
T ss_pred ccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc--c----------------------------cCHHHccC
Confidence 666666666663 234443 45555555555554432110 0 00112334
Q ss_pred CCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc
Q 010462 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+++|+.|++++|. .....+..+..+++|++|++++|.... +|..++..+++|+.|++++|.
T Consensus 173 l~~L~~L~l~~n~-----------------l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 173 LTFLEELEIDASD-----------------LQSYEPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CCEEEEEEEEETT-----------------CCEECTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB
T ss_pred CCCCCEEECCCCC-----------------cCccCHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc
Confidence 4566666666664 222234556677888888888888765 663445568889999998885
Q ss_pred CCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcc
Q 010462 372 NCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPR 450 (510)
Q Consensus 372 ~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 450 (510)
.....+. +.. ....+.++.+++.++. +....+. .+|..+..+++
T Consensus 234 l~~~~~~~l~~---------------------------------~~~~~~l~~l~L~~~~-l~~~~l~-~l~~~l~~l~~ 278 (353)
T 2z80_A 234 LDTFHFSELST---------------------------------GETNSLIKKFTFRNVK-ITDESLF-QVMKLLNQISG 278 (353)
T ss_dssp CTTCCCC---------------------------------------CCCCCCEEEEESCB-CCHHHHH-HHHHHHHTCTT
T ss_pred ccccccccccc---------------------------------ccccchhhcccccccc-ccCcchh-hhHHHHhcccC
Confidence 4432211 110 0012233333333321 2221111 24555678899
Q ss_pred cceeeeccCcccccCCccc-CCCCCCcEEEEcCCcc
Q 010462 451 LSSLTIWSCRKLKALPDHL-LQKTTLQKLHIRRCPI 485 (510)
Q Consensus 451 L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 485 (510)
|+.|++++| .++.+|..+ ..+++|+.|++++|+.
T Consensus 279 L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 279 LLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 999999998 456888764 7889999999998874
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.7e-22 Score=198.84 Aligned_cols=302 Identities=22% Similarity=0.231 Sum_probs=166.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.++.|++.++.+..++. .+++|+.|++++|.+..+.. + .++|++|+++ +|.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~l~~-----~--~~~L~~L~L~-------~n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKALSD-----L--PPLLEYLGVS-------NNQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSCCCS-----C--CTTCCEEECC-------SSCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCcccC-----C--CCCCCEEECc-------CCCCCCCc-c
Confidence 667777777777665432 24677777777776332211 1 1577788887 77777777 4
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++++|++|++++|. ++.+|..+ .+|++|++++|. +..+| .++++++|++|++++|. +..+|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc
Confidence 7777788888887777 66676533 477777887776 55666 47777778888877774 34455432 4667
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +..+..+++|+.+++.+..- .... ...++|+.|++++|....
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l-~~l~-------~~~~~L~~L~l~~N~l~~-------------- 271 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLL-KTLP-------DLPPSLEALNVRDNYLTD-------------- 271 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCC-SSCC-------SCCTTCCEEECCSSCCSC--------------
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcC-Cccc-------ccccccCEEECCCCcccc--------------
Confidence 77666554432 22356666677776665321 1110 013567777777665211
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
++. .+++|+.|++++|.... +| .. .++|+.|++++|... .++.+ .++|++|++++|. +..++.
T Consensus 272 ----l~~---~~~~L~~L~ls~N~l~~--l~-~~---~~~L~~L~l~~N~l~-~i~~~--~~~L~~L~Ls~N~-l~~lp~ 334 (454)
T 1jl5_A 272 ----LPE---LPQSLTFLDVSENIFSG--LS-EL---PPNLYYLNASSNEIR-SLCDL--PPSLEELNVSNNK-LIELPA 334 (454)
T ss_dssp ----CCC---CCTTCCEEECCSSCCSE--ES-CC---CTTCCEEECCSSCCS-EECCC--CTTCCEEECCSSC-CSCCCC
T ss_pred ----cCc---ccCcCCEEECcCCccCc--cc-Cc---CCcCCEEECcCCcCC-cccCC--cCcCCEEECCCCc-cccccc
Confidence 111 12566666766666554 33 11 246666666666332 22211 1366666666654 222221
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccc--cCCcccCCC-------
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLK--ALPDHLLQK------- 472 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l------- 472 (510)
.+++|+.|+++++. ++.+ |. .+++|+.|++++|...+ .+|..+..+
T Consensus 335 ---------------~~~~L~~L~L~~N~-l~~l------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 335 ---------------LPPRLERLIASFNH-LAEV------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp ---------------CCTTCCEEECCSSC-CSCC------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred ---------------cCCcCCEEECCCCc-cccc------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 34667777766653 4332 22 35667777777765444 455555444
Q ss_pred ------CCCcEEEEcCCc
Q 010462 473 ------TTLQKLHIRRCP 484 (510)
Q Consensus 473 ------~~L~~L~l~~c~ 484 (510)
++|+.|++++|+
T Consensus 390 ~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ------------------
T ss_pred ccccccCcCCEEECCCCc
Confidence 667777777664
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=5e-23 Score=204.04 Aligned_cols=326 Identities=19% Similarity=0.149 Sum_probs=150.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCce-------------eEEEeccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCL-------------RALKLEVREQ 148 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~ 148 (510)
..++.+.+.++.+..+|..+. ++++|+.|++++|. +.+..|..+..+.+| ++|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~----~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE----NVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccchhhhcccCchhhCChhHh----cccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec----
Confidence 567777787777765665555 78888888888776 333355556655553 666776
Q ss_pred cccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc
Q 010462 149 GLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR 228 (510)
Q Consensus 149 ~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 228 (510)
++.+..+|.. .++|++|++++|. ++.+|.. +++|++|++++|. +..+|.. .++|++|++++|.. .
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~ 144 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-E 144 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-S
T ss_pred ---CCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-C
Confidence 6666665542 2456666666665 4445542 2445555555544 3333321 13455555554422 2
Q ss_pred cccccccCcccccccCcEEEeCccCCc---------------cCcccccccccCCCceecCcccCCChhhhhHhhccCCC
Q 010462 229 YLPAGIGELIRLRSVRKFVVGGGYDRA---------------CSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 229 ~~p~~l~~l~~L~~L~l~~~~~~~~~~---------------~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
.+| .++.+++|+.|++..+....... ..+..+..+++|+.+++.+..-. ... ....
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~-~l~-------~~~~ 215 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLP-------DLPL 215 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCC-------CCCT
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC-cCC-------CCcC
Confidence 344 24444455554444433221000 00112334444444444332110 000 0012
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC 373 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 373 (510)
+|+.|++++|. . ..++ .+..+++|+.|++++|.... +| . .+++|+.|++++|..
T Consensus 216 ~L~~L~l~~n~-----------------l-~~lp-~~~~l~~L~~L~l~~N~l~~--l~-~---~~~~L~~L~l~~N~l- 269 (454)
T 1jl5_A 216 SLESIVAGNNI-----------------L-EELP-ELQNLPFLTTIYADNNLLKT--LP-D---LPPSLEALNVRDNYL- 269 (454)
T ss_dssp TCCEEECCSSC-----------------C-SSCC-CCTTCTTCCEEECCSSCCSS--CC-S---CCTTCCEEECCSSCC-
T ss_pred cccEEECcCCc-----------------C-Cccc-ccCCCCCCCEEECCCCcCCc--cc-c---cccccCEEECCCCcc-
Confidence 44444444443 1 1222 35566777777777776665 55 3 236677777777643
Q ss_pred CcCCCCCCCCccceeeccCccccEEecccccCC--C--CCCCCCccccc-cccccccccccccccccccccccccccccC
Q 010462 374 EHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV--E--SDTDGSSVIAF-PKLKHLTFWVMNALEELDFETAIKREIIIM 448 (510)
Q Consensus 374 ~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~--~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 448 (510)
..+|.. +++|++|++++|. ++.++.....- . ..-....+..+ ++|+.|+++++. ++. +|. .+
T Consensus 270 ~~l~~~--~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~------lp~---~~ 336 (454)
T 1jl5_A 270 TDLPEL--PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIE------LPA---LP 336 (454)
T ss_dssp SCCCCC--CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSC------CCC---CC
T ss_pred cccCcc--cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccc------ccc---cC
Confidence 334432 3567777777665 33332100000 0 00000001122 356666666543 332 222 46
Q ss_pred cccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 449 PRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 449 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
++|+.|++++| .++.+|. .+++|+.|++++|+.
T Consensus 337 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 88999999988 5667886 478999999998854
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-22 Score=190.91 Aligned_cols=241 Identities=20% Similarity=0.159 Sum_probs=144.1
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc---ccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI---PTNIE 163 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l---p~~i~ 163 (510)
+...+..+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 12 l~c~~~~l~~ip~~~------~~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~~ 75 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------SNGLSFKGCCSQSDF 75 (306)
T ss_dssp EECCSSCCSSCCSCC------CTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCEEEEEEHHHH
T ss_pred EEcCCCCcccCCCCC------CCCCCEEECCCCc---cCccCHhHhhccccCCEEECC-------CCccCcccCcccccc
Confidence 344444444444433 2567777777776 334344446677777777777 6665543 45555
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch--hhhccccCceeecCCCcccccccccccCccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|+
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 66777777777776 66666666677777777777766 444443 566677777777777654444445555555565
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... . ..+..+..+++|+.|++++|.
T Consensus 154 ~L~l~~n~l~~--~----------------------------~~~~~~~~l~~L~~L~Ls~n~----------------- 186 (306)
T 2z66_A 154 VLKMAGNSFQE--N----------------------------FLPDIFTELRNLTFLDLSQCQ----------------- 186 (306)
T ss_dssp EEECTTCEEGG--G----------------------------EECSCCTTCTTCCEEECTTSC-----------------
T ss_pred EEECCCCcccc--c----------------------------cchhHHhhCcCCCEEECCCCC-----------------
Confidence 55544332211 0 011123334455555555554
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCC-ccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLP-SLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~-~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.... ++...+..+++|+.|++++|......+. +..++ +|++|+|++|+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 112223455667778888888877766 5434566778888888888866555554 66664 78888888776
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=188.50 Aligned_cols=267 Identities=17% Similarity=0.071 Sum_probs=199.0
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
.+..++.+..+|..+. ++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..+.++
T Consensus 36 c~~~~~~l~~iP~~~~------~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT------EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLT-------SNGINTIEEDSFSSL 99 (353)
T ss_dssp EECCSTTCSSCCTTCC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred eeCCCCCccccccccc------ccCcEEECCCCc---CcccCHHHhccCCCCCEEECC-------CCccCccCHhhcCCC
Confidence 4555666666666543 589999999998 555456578999999999999 8888887 5678999
Q ss_pred CccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch--hhhccccCceeecCCCcccccc-cccccCccccc
Q 010462 166 LHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYL-PAGIGELIRLR 241 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~ 241 (510)
++|++|++++|. ++.+|.. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999999999999 7788775 8899999999999998 777876 6889999999999998545554 56788999999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... .....+..+++|+.+++.+... .. .....+..+++|+.|++++|........
T Consensus 178 ~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l-~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~---------- 240 (353)
T 2z80_A 178 ELEIDASDLQS---YEPKSLKSIQNVSHLILHMKQH-IL---LLEIFVDVTSSVECLELRDTDLDTFHFS---------- 240 (353)
T ss_dssp EEEEEETTCCE---ECTTTTTTCSEEEEEEEECSCS-TT---HHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred EEECCCCCcCc---cCHHHHhccccCCeecCCCCcc-cc---chhhhhhhcccccEEECCCCcccccccc----------
Confidence 99998877653 3445667778888888876432 22 2223344578999999999874322210
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccC---CCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~ 394 (510)
..........++.+++.++..... .+| .++..+++|+.|++++|... .+|. ++.+++|++|+|++|+
T Consensus 241 ----~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ----ELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ----ccccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 011223456788888887765431 145 67778999999999999554 6665 5889999999999986
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=8.7e-22 Score=183.58 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=105.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.++..+..+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~-------~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECC-------CCccceeCHhhcC
Confidence 45566666666555443 4688888888887 555455668888888888888 8887777 67788
Q ss_pred ccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+++|++|++++|..++.+ |..+..+++|++|++++|......|..+.++++|++|++++|......+..++.+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 8888888888888645655 667888888888888888844444666788888888888888543333334666666666
Q ss_pred cCcEEE
Q 010462 243 VRKFVV 248 (510)
Q Consensus 243 L~l~~~ 248 (510)
|++..+
T Consensus 158 L~l~~n 163 (285)
T 1ozn_A 158 LFLHGN 163 (285)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 665543
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.1e-23 Score=214.28 Aligned_cols=174 Identities=11% Similarity=0.015 Sum_probs=85.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc-----
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----- 180 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----- 180 (510)
|++|++.+|... ....++.....+++|++|+++ +|.+.. ++..+..+++|++|++++|. +.
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~-------~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~ 210 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLME-------ESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPK 210 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECT-------TCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECc-------cccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHH
Confidence 566666555311 111133334456666666666 444321 22223345666666666665 32
Q ss_pred ccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc---ccccccccCcccccccCcEEEeCccCCccC
Q 010462 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL---RYLPAGIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 181 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
.++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..++.+++|+.|.+..... ...
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l 285 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEM 285 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTG
T ss_pred HHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHH
Confidence 234444556666666666665 4456666666666666666542211 12223344444555444332111 122
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEE
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLH 301 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 301 (510)
...+..+++|+.|++.++. +. .......+..+++|+.|++.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEecc
Confidence 3334456667777766543 21 11222334556666666666
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=6.2e-21 Score=194.79 Aligned_cols=262 Identities=19% Similarity=0.160 Sum_probs=155.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|++.++.+..+|..+. ++|+.|++++|. +.. +|. .+++|++|+++ +|.+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~------~~L~~L~L~~N~---l~~-lp~---~l~~L~~L~Ls-------~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC------TTCSEEEECSCC---CSC-CCC---CCTTCCEEEEC-------SCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhhC------CCCcEEEecCCC---CCC-CCC---cCCCCCEEEcC-------CCcCCcCCC-
Confidence 446777887777776665442 678888888886 333 333 46778888888 777777776
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.+++|++|++++|. ++.+|. .+++|+.|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCC
Confidence 56778888888887 777776 56778888888877 6667764 377788888877 33444432 23444
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... + + ..+++|+.|++++|....
T Consensus 165 ~L~L~~N~l~~----------------------l---~----------~~~~~L~~L~Ls~N~l~~-------------- 195 (622)
T 3g06_A 165 KLWAYNNQLTS----------------------L---P----------MLPSGLQELSVSDNQLAS-------------- 195 (622)
T ss_dssp EEECCSSCCSC----------------------C---C----------CCCTTCCEEECCSSCCSC--------------
T ss_pred EEECCCCCCCC----------------------C---c----------ccCCCCcEEECCCCCCCC--------------
Confidence 44433221110 0 0 123556666666664111
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
++ ..+++|+.|++++|.+.. +| . .+++|+.|++++|. +..+| ..+++|+.|+|++|. ++.++.
T Consensus 196 ----l~---~~~~~L~~L~L~~N~l~~--l~-~---~~~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~Ls~N~-L~~lp~ 258 (622)
T 3g06_A 196 ----LP---TLPSELYKLWAYNNRLTS--LP-A---LPSGLKELIVSGNR-LTSLP--VLPSELKELMVSGNR-LTSLPM 258 (622)
T ss_dssp ----CC---CCCTTCCEEECCSSCCSS--CC-C---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC
T ss_pred ----CC---CccchhhEEECcCCcccc--cC-C---CCCCCCEEEccCCc-cCcCC--CCCCcCcEEECCCCC-CCcCCc
Confidence 11 123567777777776665 55 2 24667777777663 33444 445667777776664 333322
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
.+++|+.|++++|. ++. +|..+..+++|+.|+|++|+..+..|
T Consensus 259 ---------------~~~~L~~L~Ls~N~-L~~------lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 ---------------LPSGLLSLSVYRNQ-LTR------LPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp ---------------CCTTCCEEECCSSC-CCS------CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ---------------ccccCcEEeCCCCC-CCc------CCHHHhhccccCEEEecCCCCCCcCH
Confidence 34566666666653 332 23444566666666666665443333
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.4e-21 Score=191.77 Aligned_cols=241 Identities=20% Similarity=0.170 Sum_probs=174.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
.+.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP------SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-------RNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CcEEEECCCCcCccCCCCC------CCccEEECcCCc---CceECHHHcCCCCCCCEEECC-------CCccCCcChhhc
Confidence 3456666666666666543 689999999998 555567778999999999999 8888887 4778
Q ss_pred cccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 889999999999998 7777654 7889999999999998 555554 678899999999999777777665 4777788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... +.. +..+++|+.|++++|.
T Consensus 198 L~~L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~--------------- 229 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-----MPN----------------------------LTPLVGLEELEMSGNH--------------- 229 (452)
T ss_dssp CCEEECTTSCCSS-----CCC----------------------------CTTCTTCCEEECTTSC---------------
T ss_pred CCEEECCCCcccc-----ccc----------------------------ccccccccEEECcCCc---------------
Confidence 8888766544331 111 2344566666666665
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 230 --l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 --FPEIRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CSEECGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CcccCcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 222334556677788888888877765 4325667788888888888854433333 6778888888888775
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.2e-23 Score=210.36 Aligned_cols=368 Identities=14% Similarity=0.068 Sum_probs=238.0
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccc-hhHhhhcCC----ceeEEEecccccccccccc
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEI-LPQLFDKLT----CLRALKLEVREQGLYTNFI 155 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~~~~~~ 155 (510)
+.+++|.+.++.+... ...+...+..+++|++|++++|. +.+. ....+..++ +|++|+++ +|.+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~-------~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQ-------NCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECT-------TSCC
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEcc-------CCCC
Confidence 6789999999887631 11233334588999999999997 3332 233344566 79999999 8876
Q ss_pred c-----cccccccccCccceEeccCCCCcccc-chhhhc-----ccccceeccCCCCccc----cCchhhhccccCceee
Q 010462 156 K-----KIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCE-----LYNLERLNVDHCKNLR----ELPRGIGKLRKLMYLH 220 (510)
Q Consensus 156 ~-----~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~-----l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~ 220 (510)
. .+|..+..+++|++|++++|. ++.. +..+.. .++|++|++++|.... .++..+..+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6 468889999999999999998 5542 333332 5689999999998433 2466678889999999
Q ss_pred cCCCccccccccccc-----CcccccccCcEEEeCccCC-ccCcccccccccCCCceecCcccCCChhhhh-HhhccCCC
Q 010462 221 NEGTDSLRYLPAGIG-----ELIRLRSVRKFVVGGGYDR-ACSLGSLKKLNLLRDCRIRGLGDVSDAGEAR-RAELEKKK 293 (510)
Q Consensus 221 l~~~~~~~~~p~~l~-----~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~-~~~l~~~~ 293 (510)
+++|......+..+. ..++|+.|++..+...... ......+..+++|+.|++.+..-........ ......++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 999964333222232 2558999988877655310 0124456677889999888742111111111 22233588
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhh-----hhcccceecc
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMS-----LTNLRFLFLF 368 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~-----l~~L~~L~L~ 368 (510)
+|+.|++++|... ......++..+..+++|++|++++|.... .+...+.. .++|++|+++
T Consensus 257 ~L~~L~L~~n~l~-------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 257 RLRTLWIWECGIT-------------AKGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp CCCEEECTTSCCC-------------HHHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECT
T ss_pred CceEEECcCCCCC-------------HHHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcC
Confidence 9999999988621 12233456667778999999999998754 22123332 2699999999
Q ss_pred CccCCCc----CCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccccc
Q 010462 369 GWRNCEH----LPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKR 443 (510)
Q Consensus 369 ~~~~~~~----l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 443 (510)
+|..... ++. +..+++|++|+|++|. +...+.......- ....++|++|++++|. ++.... ..+|.
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l------~~~~~~L~~L~L~~n~-i~~~~~-~~l~~ 392 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGL------GQPGSVLRVLWLADCD-VSDSSC-SSLAA 392 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHH------TSTTCCCCEEECTTSC-CCHHHH-HHHHH
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHH------cCCCCceEEEECCCCC-CChhhH-HHHHH
Confidence 9965433 222 5678999999999986 4322111110000 0125799999999885 432111 14566
Q ss_pred ccccCcccceeeeccCccccc----CCccc-CCCCCCcEEEEcCCc
Q 010462 444 EIIIMPRLSSLTIWSCRKLKA----LPDHL-LQKTTLQKLHIRRCP 484 (510)
Q Consensus 444 ~~~~l~~L~~L~l~~c~~l~~----lp~~~-~~l~~L~~L~l~~c~ 484 (510)
.+..+++|++|++++|+.... +...+ ....+|+.|.+.++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 667899999999999965322 11111 123467777776654
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=9.8e-23 Score=210.54 Aligned_cols=353 Identities=15% Similarity=0.054 Sum_probs=224.2
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccc-----c
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIK-----K 157 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~ 157 (510)
+++|.+.++... ....+...+..+++|++|++++|.+.... .+++..+..+++|++|+++ ++.+. .
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~-------~n~~~~~~~~~ 211 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY-------MTEFAKISPKD 211 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT-------TCCCSSCCHHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee-------ccCCCccCHHH
Confidence 777777665411 01112112237899999999999732211 1155667889999999999 77664 4
Q ss_pred ccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCcc---ccCchhhhccccCceeecCCCcccccccccc
Q 010462 158 IPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNL---RELPRGIGKLRKLMYLHNEGTDSLRYLPAGI 234 (510)
Q Consensus 158 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l 234 (510)
++..+.++++|++|++++|. +..+|..+..+++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH
Confidence 45556779999999999998 7889998999999999999864422 234455778888999988876 446677777
Q ss_pred cCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEe----------cC
Q 010462 235 GELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHF----------GH 304 (510)
Q Consensus 235 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~ 304 (510)
..+++|+.|++..+.... ......+..+++|+.|++.. .+ ...........+++|++|++.. +.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred hhcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 888889998887766332 11223356677888887762 11 1233334445678899999984 22
Q ss_pred CCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh-hhhcccceeccC---ccCCCcCCC--
Q 010462 305 SRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-SLTNLRFLFLFG---WRNCEHLPP-- 378 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~-~l~~L~~L~L~~---~~~~~~l~~-- 378 (510)
. . ....+......+++|++|++..+..... .+ ..+. .+++|+.|++++ |..++..|.
T Consensus 364 ~------------~---~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 364 L------------V---SQRGLIALAQGCQELEYMAVYVSDITNE-SL-ESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp C------------C---CHHHHHHHHHHCTTCSEEEEEESCCCHH-HH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred c------------c---CHHHHHHHHhhCccCeEEEeecCCccHH-HH-HHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 0 0 1112222233468888888866665442 22 2333 488899988874 334444321
Q ss_pred -----CCCCCccceeeccCccc-cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 379 -----LGKLPSLEYLEIEGMKS-VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 379 -----~~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
+..+++|++|+|+.|.+ +........ ...+++|+.|++++|. +... ..+..+..+++|+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQ 491 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCC-CCHH----HHHHHHhcCcccC
Confidence 34578888888876553 111100000 1247788888888765 3321 2233345678888
Q ss_pred eeeeccCccccc-CCcccCCCCCCcEEEEcCCc
Q 010462 453 SLTIWSCRKLKA-LPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 453 ~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~ 484 (510)
+|+|++|+.... ++.....+++|+.|++++|+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 888888873211 34444567888888888887
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.9e-20 Score=186.28 Aligned_cols=109 Identities=25% Similarity=0.295 Sum_probs=54.5
Q ss_pred HhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccc
Q 010462 356 FMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEEL 435 (510)
Q Consensus 356 ~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 435 (510)
+..+++|++|++++| .+..+|.+..+++|++|+|++|. +..++... +..+++|+.|+++++. ++
T Consensus 192 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n~-l~-- 255 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNSQ-VS-- 255 (452)
T ss_dssp TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTSC-CC--
T ss_pred ccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCCc-Cc--
Confidence 334445555555555 23334445555555555555554 32222111 2245555555555543 22
Q ss_pred ccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCc
Q 010462 436 DFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 436 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 484 (510)
...+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++++||
T Consensus 256 ---~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 256 ---LIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ---eECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 2223344556666666766663 344443 34556667777776665
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=185.11 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=39.8
Q ss_pred CceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCch-hhhc
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPR-GIGK 212 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~ 212 (510)
+++++|+|+ ++.+..++ ..|.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+..
T Consensus 64 ~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLH-------ENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECC-------SCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCcEEEcc-------CCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 345555555 55554442 445555555555555555 33332 345555555555555554 333333 3445
Q ss_pred cccCceeecCCC
Q 010462 213 LRKLMYLHNEGT 224 (510)
Q Consensus 213 l~~L~~L~l~~~ 224 (510)
+++|++|++++|
T Consensus 135 l~~L~~L~L~~N 146 (440)
T 3zyj_A 135 LSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSC
T ss_pred cccCceeeCCCC
Confidence 555555555554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=190.82 Aligned_cols=241 Identities=19% Similarity=0.183 Sum_probs=171.0
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i 162 (510)
.+.+...+..+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+|+ +|.+..++ ..|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS------TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLS-------RNHIRTIEIGAF 108 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC------TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECC-------SSCCCEECGGGG
T ss_pred CCEEEeCCCCcCcCCCCCC------CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECC-------CCcCCccChhhc
Confidence 3456666666776676553 688999999998 555566778999999999999 88888874 678
Q ss_pred cccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp TTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred cCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 889999999999998 777765 58889999999999998 555554 678899999999998766666664 4777788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... +.. +..+++|+.|++++|.
T Consensus 187 L~~L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~--------------- 218 (440)
T 3zyj_A 187 LRYLNLAMCNLRE-----IPN----------------------------LTPLIKLDELDLSGNH--------------- 218 (440)
T ss_dssp CCEEECTTSCCSS-----CCC----------------------------CTTCSSCCEEECTTSC---------------
T ss_pred cCeecCCCCcCcc-----ccc----------------------------cCCCcccCEEECCCCc---------------
Confidence 8888766553331 111 2334556666666664
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 219 --l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 --LSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CCEECTTTTTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --cCccChhhhccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 222234456667777777777777665 4325666777888888887744433333 6677888888887765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1e-21 Score=185.94 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=121.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..++. +..+++|++|++++|. ++.+|.
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~-- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-------TSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-------CCcCCcchh-hhhcCCCCEEECcCCc-cccccC--
Confidence 55677777777776 444455667777777777777 666665544 6667777777777776 555552
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++|++|++++|. +..++. ..+++|++|++++|......|..++.+++|+.|++..+....
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------- 158 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-------------- 158 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------------
T ss_pred --CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------------
Confidence 3677777777776 444443 235667777777764433334445555555555544332221
Q ss_pred CCCceecCcccCCChhhhhHhh-ccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAE-LEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
..... ...+++|+.|++++|... .+ .....+++|+.|++++|.
T Consensus 159 -----------------~~~~~~~~~l~~L~~L~L~~N~l~------------------~~-~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 159 -----------------VNFAELAASSDTLEHLNLQYNFIY------------------DV-KGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp -----------------EEGGGGGGGTTTCCEEECTTSCCC------------------EE-ECCCCCTTCCEEECCSSC
T ss_pred -----------------ccHHHHhhccCcCCEEECCCCcCc------------------cc-ccccccccCCEEECCCCc
Confidence 00011 123455666666555411 00 122235667777777666
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
... +| ..+..+++|+.|++++|... .+|. +..+++|+.|++++|+
T Consensus 203 l~~--l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 203 LAF--MG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCE--EC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred CCc--ch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 665 55 44556666666666666433 3333 5556666666666654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=3.8e-22 Score=188.81 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=173.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchhhhcc
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
++..++..+. +.......+..+++|++|+++ ++.+..++ ..+.++++|++|++++|. +..++. +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECT-------TSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECc-------CCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 3444455554 444455666777889999998 88888774 678889999999999998 666655 8888
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCC
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRD 269 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 269 (510)
++|++|++++|. +..+| ..++|++|++++|.. ..++. ..+++|+.|++..+....
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~----------------- 134 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITM----------------- 134 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCS-----------------
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCC-----------------
Confidence 999999999987 66555 348889999988844 33332 124555555554333221
Q ss_pred ceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC-CCCCCccEEEEeecCCcc
Q 010462 270 CRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL-GPPPNLKKLRIDEYRGRR 348 (510)
Q Consensus 270 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 348 (510)
.....+..+++|+.|++++|... ...+..+ ..+++|+.|++++|.+..
T Consensus 135 --------------~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 135 --------------LRDLDEGCRSRVQYLDLKLNEID-----------------TVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp --------------GGGBCTGGGSSEEEEECTTSCCC-----------------EEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred --------------ccchhhhccCCCCEEECCCCCCC-----------------cccHHHHhhccCcCCEEECCCCcCcc
Confidence 01112334466666776666511 1112222 245677777777777665
Q ss_pred CCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccc
Q 010462 349 NVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWV 428 (510)
Q Consensus 349 ~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 428 (510)
++ .. ..+++|++|++++|......+.+..+++|++|+|++|. ++.++..+ ..+++|+.|++++
T Consensus 184 --~~-~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~ 246 (317)
T 3o53_A 184 --VK-GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRG 246 (317)
T ss_dssp --EE-CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTT
T ss_pred --cc-cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccC
Confidence 44 22 24677777777777544333346677777777777775 55554432 2567777777776
Q ss_pred cccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchH
Q 010462 429 MNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILE 487 (510)
Q Consensus 429 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 487 (510)
++ +.. +..+..+..+++|+.|++.+|..++..+......+.+....-..|..+.
T Consensus 247 N~-~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 247 NG-FHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CC-CBH----HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CC-ccC----cCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 65 220 2344555667777777777666665543332223333333333454443
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-20 Score=177.31 Aligned_cols=231 Identities=19% Similarity=0.125 Sum_probs=168.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+..++... +.++++|+.|++++|.+..... .+..+..+++|++|+++ ++.+..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls-------~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS-------FNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC-------SCSEEEEEEE
T ss_pred CCCCEEECCCCccCccCHhH---hhccccCCEEECCCCccCcccC-cccccccccccCEEECC-------CCccccChhh
Confidence 78999999999888666542 2389999999999998433322 35557889999999999 9999999999
Q ss_pred ccccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc-cccccccCcc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR-YLPAGIGELI 238 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~ 238 (510)
+..+++|++|++++|. +..++. .+..+++|++|++++|......|..+..+++|++|++++|.... .+|..++.++
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 9999999999999999 777764 68899999999999999556667778999999999999996544 5788899999
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|+.|++..+.... .....+..+++|+.|++.+..-. ......+..+++|+.|++++|.
T Consensus 176 ~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~-------------- 234 (306)
T 2z66_A 176 NLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNSLQVLDYSLNH-------------- 234 (306)
T ss_dssp TCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCS----BCCSGGGTTCTTCCEEECTTSC--------------
T ss_pred CCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccC----ccChhhccCcccCCEeECCCCC--------------
Confidence 99999887765542 22344555666666666553211 1111234556666666666665
Q ss_pred cchhhHhhhccCCCC-CCccEEEEeecCCcc
Q 010462 319 EEDEDERLLEALGPP-PNLKKLRIDEYRGRR 348 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 348 (510)
.....+..+..+ ++|+.|++++|.+..
T Consensus 235 ---l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 235 ---IMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ---CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ---CcccCHHHHHhhhccCCEEEccCCCeec
Confidence 112223334444 366666666666543
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=5.5e-20 Score=187.78 Aligned_cols=257 Identities=21% Similarity=0.242 Sum_probs=171.8
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhc
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCE 188 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 188 (510)
.+++.|++++|. +.. +|..+. ++|++|+++ +|.+..+|. .+++|++|++++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~---L~~-lp~~l~--~~L~~L~L~-------~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSC---CSC-CCSCCC--TTCSEEEEC-------SCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCC---cCc-cChhhC--CCCcEEEec-------CCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 457888888887 333 343333 678888888 788877776 46788888888887 777776 6
Q ss_pred ccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCC
Q 010462 189 LYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 268 (510)
+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|+.|++..+.... ++
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~--------l~------ 157 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS--------LP------ 157 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC--------CC------
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCC--------cC------
Confidence 7888888888887 667776 56778888888873 4556653 3566666555432221 00
Q ss_pred CceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCcc
Q 010462 269 DCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRR 348 (510)
Q Consensus 269 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 348 (510)
....+|+.|++++|... .++ ..+++|+.|++++|.+..
T Consensus 158 ---------------------~~~~~L~~L~L~~N~l~------------------~l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 158 ---------------------ALPSELCKLWAYNNQLT------------------SLP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ---------------------CCCTTCCEEECCSSCCS------------------CCC---CCCTTCCEEECCSSCCSC
T ss_pred ---------------------CccCCCCEEECCCCCCC------------------CCc---ccCCCCcEEECCCCCCCC
Confidence 01245666766666411 111 345778888888888776
Q ss_pred CCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccc
Q 010462 349 NVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWV 428 (510)
Q Consensus 349 ~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 428 (510)
+| . .+++|+.|++++|. +..+|. .+++|+.|+|++|. ++.++ ..+++|+.|++++
T Consensus 196 --l~-~---~~~~L~~L~L~~N~-l~~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 196 --LP-T---LPSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSG 250 (622)
T ss_dssp --CC-C---CCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCS
T ss_pred --CC-C---ccchhhEEECcCCc-ccccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCC
Confidence 66 3 34788888888874 444553 34778888888775 44333 1467888888887
Q ss_pred cccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 429 MNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 429 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
+. ++.+. . .+++|+.|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 251 N~-L~~lp------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 251 NR-LTSLP------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SC-CSCCC------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CC-CCcCC------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 63 54432 2 4678888888888 4567887788888888888888864
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=6.4e-21 Score=179.96 Aligned_cols=201 Identities=18% Similarity=0.102 Sum_probs=119.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc--cccccc-------ccCccceEeccCCC
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--IPTNIE-------KLLHLKYLSLFGQK 177 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--lp~~i~-------~l~~L~~L~l~~~~ 177 (510)
..++|+.|++.+|.+ . +|..+... |++|+++ ++.+.. +|..+. ++.+|++|++++|.
T Consensus 41 ~~~~L~~l~l~~n~l----~-~p~~~~~~--L~~L~L~-------~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE----A-DLGQFTDI--IKSLSLK-------RLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEECTTHHHHCCTT----C-CCHHHHHH--HHHCCCC-------EEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred cCCCceeEeeccccc----c-cHHHHHHH--Hhhcccc-------cccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 455666667777762 2 34333333 6777777 666533 454444 56777777777777
Q ss_pred Cccccchhh--hcccccceeccCCCCccccCchhhhcc-----ccCceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 178 KIEKLPETL--CELYNLERLNVDHCKNLRELPRGIGKL-----RKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 178 ~~~~lp~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
+.+.+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|......|..++.+++|++|++.++..
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 333566655 667777777777776 44456666665 6777777777744333334444444444444332211
Q ss_pred ccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 251 GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 251 ~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
. .....+..+
T Consensus 186 ~----------------------------------------------------------------------~~~~~~~~~ 195 (312)
T 1wwl_A 186 L----------------------------------------------------------------------GERGLISAL 195 (312)
T ss_dssp C----------------------------------------------------------------------HHHHHHHHS
T ss_pred C----------------------------------------------------------------------cchHHHHHH
Confidence 1 001112222
Q ss_pred --CCCCCccEEEEeecCCccCCCc---hhHHhhhhcccceeccCccCCCcCC--CCCCCCccceeeccCcc
Q 010462 331 --GPPPNLKKLRIDEYRGRRNVVP---ISWFMSLTNLRFLFLFGWRNCEHLP--PLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 331 --~~~~~L~~L~l~~~~~~~~~~p---~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~ 394 (510)
..+++|++|++++|.+.. ++ ...+..+++|++|++++|......| .+..+++|++|+|++|.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCC--HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HhccCCCCCEEECCCCcCcc--hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 566788888888887763 32 1233467899999999986655443 35667888888888775
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.7e-21 Score=201.43 Aligned_cols=366 Identities=14% Similarity=0.071 Sum_probs=164.1
Q ss_pred CceeEEEEEeecCCCccccccccc-cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc---
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNV-KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--- 157 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 157 (510)
+.+++|.+.++.+... ....+ ..+++|++|++.+|.... ...++..+..+++|++|+++ +|.+..
T Consensus 105 ~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~-------~~~i~~~~~ 173 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDD---CLELIAKSFKNFKVLVLSSCEGFS-TDGLAAIAATCRNLKELDLR-------ESDVDDVSG 173 (594)
T ss_dssp TTCCEEEEESCBCCHH---HHHHHHHHCTTCCEEEEESCEEEE-HHHHHHHHHHCTTCCEEECT-------TCEEECCCG
T ss_pred CCCCeEEeeCcEEcHH---HHHHHHHhCCCCcEEeCCCcCCCC-HHHHHHHHHhCCCCCEEeCc-------CCccCCcch
Confidence 4566666666554321 11111 146677777777663111 11144444567777777776 554332
Q ss_pred --ccccccccCccceEeccCCC-Cc--cccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcc------
Q 010462 158 --IPTNIEKLLHLKYLSLFGQK-KI--EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDS------ 226 (510)
Q Consensus 158 --lp~~i~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------ 226 (510)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+.++++|++|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 22222345667777776664 01 11222234457777777777654555666666677777776554421
Q ss_pred cccccccccCcccccccC-cEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCC
Q 010462 227 LRYLPAGIGELIRLRSVR-KFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHS 305 (510)
Q Consensus 227 ~~~~p~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 305 (510)
+..++..+.++++|+.|. +..... ......+..+++|+.|++.++. +. .......+..+++|+.|++.++.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~- 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVP----AYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI- 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCG----GGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-
T ss_pred HHHHHHHHhcCCCcccccCCcccch----hhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-
Confidence 111222233334444331 110000 0111112234555555555443 21 11122223444555555555442
Q ss_pred CCCCcc----------cccC--------CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceec
Q 010462 306 RDGDEE----------RAGR--------RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFL 367 (510)
Q Consensus 306 ~~~~~~----------~~~~--------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L 367 (510)
...... .... .................+++|+.|.+..+......+. .....+++|+.|++
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEe
Confidence 000000 0000 0000000000111111245555554444443321011 11124566666666
Q ss_pred c-----CccCCCcCCC-------CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccc
Q 010462 368 F-----GWRNCEHLPP-------LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEEL 435 (510)
Q Consensus 368 ~-----~~~~~~~l~~-------~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 435 (510)
+ +|...+..|. +..+++|+.|+|++ .+...+.... ...+++|+.|++++|. +..
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l----------~~~~~~L~~L~L~~~~-i~~- 470 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI----------GTYAKKMEMLSVAFAG-DSD- 470 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH----------HHHCTTCCEEEEESCC-SSH-
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH----------HHhchhccEeeccCCC-CcH-
Confidence 6 2333332221 23455666666644 1111100000 0125677777777664 222
Q ss_pred cccccccccc-ccCcccceeeeccCcccccC-CcccCCCCCCcEEEEcCCcc
Q 010462 436 DFETAIKREI-IIMPRLSSLTIWSCRKLKAL-PDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 436 ~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~ 485 (510)
..+..+ ..+++|+.|+|++|+..... ...+..+++|+.|++++|+.
T Consensus 471 ----~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 471 ----LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ----HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ----HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 112112 46899999999999763222 22345578999999999976
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=4.1e-21 Score=181.30 Aligned_cols=244 Identities=18% Similarity=0.137 Sum_probs=168.4
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhh-------cCCceeEEEeccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-------KLTCLRALKLEVREQGLYTNFIK 156 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 156 (510)
++.+.+.++.+ ..|..+. .. |+.|++++|.+... .+|..+. .+++|++|+++ ++.+.
T Consensus 45 L~~l~l~~n~l-~~p~~~~----~~--L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~-------~n~l~ 108 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFT----DI--IKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLE-------NLEVT 108 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHH----HH--HHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEE-------EEBCB
T ss_pred ceeEeeccccc-ccHHHHH----HH--HhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEcc-------CCccc
Confidence 34444444444 3455444 33 88888888873221 2444343 79999999999 88887
Q ss_pred -cccccc--cccCccceEeccCCCCccccchhhhcc-----cccceeccCCCCccccCchhhhccccCceeecCCCcccc
Q 010462 157 -KIPTNI--EKLLHLKYLSLFGQKKIEKLPETLCEL-----YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR 228 (510)
Q Consensus 157 -~lp~~i--~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 228 (510)
.+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......|..++++++|++|++++|....
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 578876 889999999999999 77778888888 999999999999444444789999999999999996543
Q ss_pred c--ccccc--cCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 229 Y--LPAGI--GELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 229 ~--~p~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
. +|..+ +.+++|+.|++..+... .........+..+++|+.|++++|.
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGME----------------------------TPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCC----------------------------CHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCc----------------------------chHHHHHHHHhcCCCCCEEECCCCc
Confidence 3 23333 66666666665433221 1111222334466788888888876
Q ss_pred CCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCc
Q 010462 305 SRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPS 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~ 384 (510)
..... ....+..+++|+.|++++|.+.. +| .++. ++|++|++++|.. ..+|.+..+++
T Consensus 240 l~~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~--ip-~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~ 297 (312)
T 1wwl_A 240 LRDAA----------------GAPSCDWPSQLNSLNLSFTGLKQ--VP-KGLP--AKLSVLDLSYNRL-DRNPSPDELPQ 297 (312)
T ss_dssp CCSSC----------------CCSCCCCCTTCCEEECTTSCCSS--CC-SSCC--SEEEEEECCSSCC-CSCCCTTTSCE
T ss_pred CCccc----------------chhhhhhcCCCCEEECCCCccCh--hh-hhcc--CCceEEECCCCCC-CCChhHhhCCC
Confidence 22111 01234456788999999888876 77 5444 7888999988854 44466888888
Q ss_pred cceeeccCcc
Q 010462 385 LEYLEIEGMK 394 (510)
Q Consensus 385 L~~L~L~~~~ 394 (510)
|++|+|++|+
T Consensus 298 L~~L~L~~N~ 307 (312)
T 1wwl_A 298 VGNLSLKGNP 307 (312)
T ss_dssp EEEEECTTCT
T ss_pred CCEEeccCCC
Confidence 8888888876
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=2.7e-20 Score=186.29 Aligned_cols=234 Identities=14% Similarity=0.115 Sum_probs=118.6
Q ss_pred ceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
+|++|+++ +|.+..+ |..|+.+++|++|+|++|. +...+. +..+++|++|++++|. +..+|. .++
T Consensus 35 ~L~~L~Ls-------~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~ 100 (487)
T 3oja_A 35 NVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPS 100 (487)
T ss_dssp GCCEEECC-------SSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTT
T ss_pred CccEEEee-------CCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCC
Confidence 66666666 6666555 3556666666666666666 444443 6666666666666665 444443 256
Q ss_pred CceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCC
Q 010462 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 295 (510)
|++|++++|......+. .+++|+.|++..+.... ..+..+..+++|
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-------------------------------~~~~~~~~l~~L 146 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------------------------LRDLDEGCRSRV 146 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------------------------GGGBCGGGGSSE
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------------------------CCchhhcCCCCC
Confidence 66666666633222111 22334444333222111 001112233444
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhccCC-CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCC
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALG-PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCE 374 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 374 (510)
+.|++++|.. ....+..+. .+++|+.|++++|.+.. +| . ...+++|+.|++++|....
T Consensus 147 ~~L~Ls~N~l-----------------~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~-~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 147 QYLDLKLNEI-----------------DTVNFAELAASSDTLEHLNLQYNFIYD--VK-G-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp EEEECTTSCC-----------------CEEEGGGGGGGTTTCCEEECTTSCCCE--EE-C-CCCCTTCCEEECCSSCCCE
T ss_pred CEEECCCCCC-----------------CCcChHHHhhhCCcccEEecCCCcccc--cc-c-cccCCCCCEEECCCCCCCC
Confidence 4555544431 111222222 45666667766666554 44 2 1246666666666664443
Q ss_pred cCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCccccee
Q 010462 375 HLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSL 454 (510)
Q Consensus 375 ~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 454 (510)
..|.++.+++|+.|+|++|. +..+|.. +..+++|+.|++++++ +.. +..|..+..++.|+.|
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~------------l~~l~~L~~L~l~~N~-l~c----~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNK-LVLIEKA------------LRFSQNLEHFDLRGNG-FHC----GTLRDFFSKNQRVQTV 267 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSC-CCEECTT------------CCCCTTCCEEECTTCC-BCH----HHHHHHHTTCHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCc-Ccccchh------------hccCCCCCEEEcCCCC-CcC----cchHHHHHhCCCCcEE
Confidence 33346666666666666665 4444432 1245666666666554 110 2234444556666666
Q ss_pred eec
Q 010462 455 TIW 457 (510)
Q Consensus 455 ~l~ 457 (510)
++.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 665
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.6e-19 Score=165.79 Aligned_cols=152 Identities=23% Similarity=0.276 Sum_probs=123.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l-p 159 (510)
..+++|.+.++.+...+.. .+..+++|++|++++|. +..+.+..|..+++|++|+++ ++. +..+ |
T Consensus 32 ~~l~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS-------DNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHH---HcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC-------CCCCccccCH
Confidence 7899999999988765432 23389999999999998 556567789999999999999 886 8888 7
Q ss_pred ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~ 236 (510)
..+..+++|++|++++|. +..+ |..+.++++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|. .+..
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~ 175 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRG 175 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTT
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc-cccCHHHhcC
Confidence 789999999999999999 5555 6778999999999999999 666664 488999999999999954 44443 4677
Q ss_pred cccccccCcEEEe
Q 010462 237 LIRLRSVRKFVVG 249 (510)
Q Consensus 237 l~~L~~L~l~~~~ 249 (510)
+++|+.|++..+.
T Consensus 176 l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 176 LHSLDRLLLHQNR 188 (285)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEECCCCc
Confidence 7777777665443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.5e-19 Score=179.31 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=174.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..++. ++.+++|++|++++|. ++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (487)
T ss_dssp TGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-------TSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-------CCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC--
Confidence 55689999999998 555567789999999999999 888877655 8889999999999998 777764
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++|++|++++|. +..+|. ..+++|+.|++++|......|..++.+++|+.|++..+.... ..+..+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~l----- 164 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---VNFAEL----- 164 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE---EEGGGG-----
T ss_pred --CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC---cChHHH-----
Confidence 3899999999998 555554 356889999999997666667778888888888776554432 011111
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
...+++|+.|++++|.+. .. .....+++|+.|++++|.+
T Consensus 165 ----------------------~~~l~~L~~L~Ls~N~l~------------------~~-~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 165 ----------------------AASSDTLEHLNLQYNFIY------------------DV-KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ----------------------GGGTTTCCEEECTTSCCC------------------EE-ECCCCCTTCCEEECCSSCC
T ss_pred ----------------------hhhCCcccEEecCCCccc------------------cc-cccccCCCCCEEECCCCCC
Confidence 113466777777766511 01 2234578999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcccc-EEecccccCCCCCCCCCccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSV-KRVGNEFLGVESDTDGSSVIAFPKLKHL 424 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L 424 (510)
.. +| ..+..+++|+.|++++|... .+|. ++.+++|+.|++++|+.. ..++.. +..++.|+.+
T Consensus 204 ~~--~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~------------~~~l~~L~~l 267 (487)
T 3oja_A 204 AF--MG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF------------FSKNQRVQTV 267 (487)
T ss_dssp CE--EC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH------------HTTCHHHHHH
T ss_pred CC--CC-HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH------------HHhCCCCcEE
Confidence 87 77 56788999999999999655 4554 888999999999998722 112111 2356777777
Q ss_pred ccccc
Q 010462 425 TFWVM 429 (510)
Q Consensus 425 ~l~~~ 429 (510)
.+..+
T Consensus 268 ~~~~~ 272 (487)
T 3oja_A 268 AKQTV 272 (487)
T ss_dssp HHHHH
T ss_pred ecccc
Confidence 77543
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.3e-21 Score=197.63 Aligned_cols=254 Identities=16% Similarity=0.086 Sum_probs=157.0
Q ss_pred CceeEEEEEeecCCC----cccc--------ccccccCCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEeccccc
Q 010462 82 TKILHLMLTLHRGAS----VPIP--------IWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQ 148 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~----~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~ 148 (510)
+.++.+.+.++.... .+.. +......+++|+.|++++|. +.+..+..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~---- 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLS---- 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEE----
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCC----
Confidence 568888888764211 1110 01112378899999999987 3332344453 78999999999
Q ss_pred ccccc-cccc--ccccccccCccceEeccCCCCccc-----cchhhhcccccceeccCCCC-cc--ccCchhhhccccCc
Q 010462 149 GLYTN-FIKK--IPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNLERLNVDHCK-NL--RELPRGIGKLRKLM 217 (510)
Q Consensus 149 ~~~~~-~~~~--lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~-~~--~~lp~~~~~l~~L~ 217 (510)
++ .+.. ++..+.++++|++|++++|. +.. ++.....+++|+.|++++|. .+ ..++..+..+++|+
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 139 ---SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp ---SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred ---CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 66 4444 45555579999999999998 444 22223367799999999886 11 12233345679999
Q ss_pred eeecCCCcccccccccccCcccccccCcEEEeCcc---CCccCcccccccccCCCc-eecCcccCCChhhhhHhhccCCC
Q 010462 218 YLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGY---DRACSLGSLKKLNLLRDC-RIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 218 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~---~~~~~~~~l~~l~~L~~l-~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
+|++++|.....+|..+..+++|+.|.+..+...- ........+.++++|+.+ .+.. .. .......+..++
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~---~~--~~~l~~~~~~~~ 289 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD---AV--PAYLPAVYSVCS 289 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT---CC--GGGGGGGHHHHT
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc---cc--hhhHHHHHHhhC
Confidence 99999986666677778888899988765432100 001122244555666655 2222 11 123333444678
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFG 369 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 369 (510)
+|++|++++|.. ........+..+++|++|++.+| .....++ .....+++|++|++.+
T Consensus 290 ~L~~L~L~~~~l----------------~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~-~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 290 RLTTLNLSYATV----------------QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE-VLASTCKDLRELRVFP 347 (594)
T ss_dssp TCCEEECTTCCC----------------CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH-HHHHHCTTCCEEEEEC
T ss_pred CCCEEEccCCCC----------------CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH-HHHHhCCCCCEEEEec
Confidence 999999998861 11223334566788888888887 2221122 3344678888888844
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=2.9e-18 Score=161.17 Aligned_cols=194 Identities=18% Similarity=0.274 Sum_probs=119.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
++++|+.|++.+|. +.. ++. +..+++|++|+++ +|.+..++. +..+++|++|++++|. ++.+| .+
T Consensus 39 ~l~~L~~L~l~~~~---i~~-l~~-~~~l~~L~~L~L~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTG---VTT-IEG-VQYLNNLIGLELK-------DNQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCC---ccC-chh-hhccCCCCEEEcc-------CCcCCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 56677777777776 333 332 6667777777777 677766655 6677777777777777 66665 36
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
..+++|++|++++|. +..+|. +..+++|++|++++|.. ..++. ++.+++|+
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~------------------------- 154 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQ------------------------- 154 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCC-------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCcc-------------------------
Confidence 677777777777776 555554 66777777777776632 22222 33333333
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
.|++++|... .++ .+..+++|+.|++++|..
T Consensus 155 ------------------------------~L~l~~n~l~------------------~~~-~l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 155 ------------------------------YLSIGNAQVS------------------DLT-PLANLSKLTTLKADDNKI 185 (308)
T ss_dssp ------------------------------EEECCSSCCC------------------CCG-GGTTCTTCCEEECCSSCC
T ss_pred ------------------------------EEEccCCcCC------------------CCh-hhcCCCCCCEEECCCCcc
Confidence 3333333200 001 144566777777777776
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEe
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRV 399 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~ 399 (510)
.. ++ . +..+++|++|++++|.. ..++.+..+++|+.|++++|+ +...
T Consensus 186 ~~--~~-~-l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 186 SD--IS-P-LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp CC--CG-G-GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE-EECC
T ss_pred Cc--Ch-h-hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe-eecC
Confidence 65 55 3 56777888888888743 344457778888888888776 4433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=2.4e-18 Score=159.43 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-hhh
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-ETL 186 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~~ 186 (510)
++|++|++++|. +..+.+..|..+++|++|+++ ++.+..++ ..+.++++|++|++++|. ++.++ ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECT-------TCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECC-------CCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 468888888887 444445567788888888888 77777774 467778888888888887 55544 567
Q ss_pred hcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCcccccccCcEEEeC
Q 010462 187 CELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
.++++|++|++++|. +..++. .++.+++|++|++++|.... .+|..++.+++|+.|++..+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 788888888888887 444443 57778888888888875433 2566677777777776665543
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.9e-19 Score=172.01 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=152.1
Q ss_pred CCccEEEeccCCcCccccchhHhhhcC--CceeEEEeccccccccccccccccccccccCccceEeccCCCCccc--cch
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKL--TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK--LPE 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~ 184 (510)
..++.++++++. + .+..+..+ +++++|+++ ++.+...+..+..+++|++|++++|. +.. +|.
T Consensus 47 ~~~~~l~l~~~~---~---~~~~~~~~~~~~l~~L~l~-------~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~ 112 (336)
T 2ast_B 47 SLWQTLDLTGKN---L---HPDVTGRLLSQGVIAFRCP-------RSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHG 112 (336)
T ss_dssp TTSSEEECTTCB---C---CHHHHHHHHHTTCSEEECT-------TCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHH
T ss_pred hhheeecccccc---C---CHHHHHhhhhccceEEEcC-------CccccccchhhccCCCCCEEEccCCC-cCHHHHHH
Confidence 346778888775 2 24446666 788999998 88877776667788999999999988 543 777
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc--cccccccCcccccccCcEEEeCccCCccCccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR--YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLK 262 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 262 (510)
.+..+++|++|++++|......|..++++++|++|++++|..+. .++..+..+++|++|+
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~------------------ 174 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN------------------ 174 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE------------------
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc------------------
Confidence 78889999999999988555677778888899999988883222 1333233333333333
Q ss_pred ccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEec-CCCCCCcccccCCCCcchhhHhhhccCCCCC-CccEEE
Q 010462 263 KLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG-HSRDGDEERAGRRENEEDEDERLLEALGPPP-NLKKLR 340 (510)
Q Consensus 263 ~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~ 340 (510)
+++| .. ....++..+..++ +|++|+
T Consensus 175 -------------------------------------l~~~~~l----------------~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 175 -------------------------------------LSWCFDF----------------TEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp -------------------------------------CCCCTTC----------------CHHHHHHHHHHSCTTCCEEE
T ss_pred -------------------------------------CCCCCCc----------------ChHHHHHHHHhcccCCCEEE
Confidence 3332 10 0011222233345 666666
Q ss_pred EeecC--CccCCCchhHHhhhhcccceeccCccCCC--cCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccc
Q 010462 341 IDEYR--GRRNVVPISWFMSLTNLRFLFLFGWRNCE--HLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVI 416 (510)
Q Consensus 341 l~~~~--~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 416 (510)
+++|. .....+| ..+..+++|++|++++|...+ .++.++.+++|++|++++|..+.. ..+ . .+.
T Consensus 202 l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~-~--------~l~ 269 (336)
T 2ast_B 202 LSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETL-L--------ELG 269 (336)
T ss_dssp CCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGG-G--------GGG
T ss_pred eCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHH-H--------HHh
Confidence 66663 2211144 455667777777777775332 233466677777777777752211 100 0 133
Q ss_pred cccccccccccccccccccccccccccccccC-cccceeeeccCcccccCCcccC
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIM-PRLSSLTIWSCRKLKALPDHLL 470 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 470 (510)
.+++|+.|++++| +..-.+ ..+ .+|+.|++++|...+..|..+.
T Consensus 270 ~~~~L~~L~l~~~--i~~~~~--------~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 270 EIPTLKTLQVFGI--VPDGTL--------QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GCTTCCEEECTTS--SCTTCH--------HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCCCCCEEeccCc--cCHHHH--------HHHHhhCcceEEecccCccccCCccc
Confidence 5777777777776 222111 122 3466667777755455555443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=9.8e-18 Score=155.97 Aligned_cols=197 Identities=19% Similarity=0.133 Sum_probs=108.3
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
++++++.+++.++. +.. +|..+ .+.+++|+++ +|.+..+ |..+..+++|++|++++|. ++.+|..
T Consensus 8 ~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLS-------ENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECT-------TSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcC-------CCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 55666666666665 333 22212 1456666666 6666555 3456666666666666666 5555553
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
..+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|+.|++..+....
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------------- 138 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------------- 138 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-------------
Confidence 566666666666666 55666666666666666666663322222334444444444332211110
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
..+..+..+++|+.|++++|.
T Consensus 139 -----------------------------------------------------------~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 139 -----------------------------------------------------------LPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp -----------------------------------------------------------CCTTTTTTCTTCCEEECTTSC
T ss_pred -----------------------------------------------------------cChhhcccccCCCEEECCCCc
Confidence 001123345566666666666
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+.. +|...+..+++|+.|++++|... .+|. +..+++|+.|+|++|+
T Consensus 160 l~~--l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTE--LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSC--CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCc--cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 655 55344556777777777777433 4443 5666677777777765
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3e-17 Score=151.49 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 332 PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.+++|+.|++++|.+.. ++...+..+++|+.|++++|......+. ++.+++|+.|++++|+
T Consensus 155 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 34555566666555554 4424445666677777766644433333 5666677777776654
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.5e-17 Score=151.88 Aligned_cols=196 Identities=24% Similarity=0.285 Sum_probs=114.5
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchh-hh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPET-LC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-~~ 187 (510)
..++++++++. +.. +|..+. +++++|+++ ++.+..+| ..+.++++|++|++++|. +..+|.. +.
T Consensus 17 ~~~~l~~~~~~---l~~-ip~~~~--~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKK---LTA-IPSNIP--ADTKKLDLQ-------SNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCC---CCc-cCCCCC--CCCCEEECc-------CCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 45667777766 333 232222 467777777 66666664 356677777777777776 5666554 35
Q ss_pred cccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
++++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------------------- 138 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL----------------------- 138 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------------------
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE-----------------------
Confidence 67777777777776 444443 34667777777777663322222223333333333
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
++++|... ......+..+++|+.|++++|.+
T Consensus 139 --------------------------------~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 139 --------------------------------SLGYNELQ-----------------SLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp --------------------------------ECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------ECCCCcCC-----------------ccCHhHccCCcccceeEecCCcC
Confidence 33333210 00112244566777777777776
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.. ++...+..+++|++|++++|......+. +..+++|+.|+|++|+
T Consensus 170 ~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KR--VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cE--eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 65 5534566778888888888744432222 6777888888888765
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=156.09 Aligned_cols=229 Identities=17% Similarity=0.067 Sum_probs=149.5
Q ss_pred CCCCccEEEeccCCcCcccc-chhHhhhcCCceeEEEecccccccccccccc-ccccc--cccCccceEeccCCCCcccc
Q 010462 107 GLRGLRSLLVESGEYSWSNE-ILPQLFDKLTCLRALKLEVREQGLYTNFIKK-IPTNI--EKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-lp~~i--~~l~~L~~L~l~~~~~~~~l 182 (510)
....++.+.+.++......- .+.. +..+++|++|+++ +|.+.. .|..+ ..+++|++|++++|.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~-------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE-------DLKITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE-------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee-------CCEeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 44567888888876321100 0112 3345679999999 888664 47776 88999999999999833333
Q ss_pred c----hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccc--cc--ccccCcccccccCcEEEeCccCC
Q 010462 183 P----ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRY--LP--AGIGELIRLRSVRKFVVGGGYDR 254 (510)
Q Consensus 183 p----~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l~~~~~~~~~ 254 (510)
| ..+..+++|++|++++|......|..++.+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--- 210 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--- 210 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---
Confidence 3 3345789999999999995444556788999999999999954321 22 22356666666665544322
Q ss_pred ccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCC--
Q 010462 255 ACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGP-- 332 (510)
Q Consensus 255 ~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 332 (510)
.........+..+++|+.|++++|... ...+..+..
T Consensus 211 -------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~-----------------~~~p~~~~~~~ 248 (310)
T 4glp_A 211 -------------------------TPTGVCAALAAAGVQPHSLDLSHNSLR-----------------ATVNPSAPRCM 248 (310)
T ss_dssp -------------------------CHHHHHHHHHHHTCCCSSEECTTSCCC-----------------CCCCSCCSSCC
T ss_pred -------------------------chHHHHHHHHhcCCCCCEEECCCCCCC-----------------ccchhhHHhcc
Confidence 111111122355677788888777622 112223333
Q ss_pred -CCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 333 -PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 333 -~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
+++|++|++++|.+.. +| ..+ +++|+.|++++|. +..+|.+..+++|+.|+|++|+
T Consensus 249 ~~~~L~~L~Ls~N~l~~--lp-~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ--VP-KGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCCS--CC-SCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCCc--hh-hhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 3688888888888876 77 443 3788888888884 4455667778888888888876
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=3.4e-17 Score=152.30 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=122.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ ++.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~------~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC------CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECC-------CCccCcccCC
Confidence 668888888888887776553 789999999998 555567789999999999999 9999888764
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCccccccc-ccccCccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIR 239 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~ 239 (510)
+.+++|++|++++|. ++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+| ..+..+++
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccC
Confidence 789999999999999 88999999999999999999999 66666 5689999999999999955 4444 44567777
Q ss_pred ccccCcEEE
Q 010462 240 LRSVRKFVV 248 (510)
Q Consensus 240 L~~L~l~~~ 248 (510)
|+.|++..+
T Consensus 150 L~~L~L~~N 158 (290)
T 1p9a_G 150 LEKLSLANN 158 (290)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 777766543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=2.3e-17 Score=149.30 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=75.4
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccccc-cccccCccceEeccC-CCCccccc-h
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKIPT-NIEKLLHLKYLSLFG-QKKIEKLP-E 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~~lp-~ 184 (510)
++|+.|++++|. +..+.+..|..+++|++|+++ ++. +..++. .+.++++|++|++++ |. ++.+| .
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~-------~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVS-------IDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEE-------CCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTT
T ss_pred CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCC-------CCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHH
Confidence 378888888887 455455567788888888888 775 777754 677788888888887 66 66665 3
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCc---eeecCCC
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLM---YLHNEGT 224 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~---~L~l~~~ 224 (510)
.+.++++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 56778888888888877 666776 66677776 7777776
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.2e-18 Score=163.53 Aligned_cols=252 Identities=17% Similarity=0.074 Sum_probs=142.4
Q ss_pred ceeEEEEEeecCCCccccccccccCC--CCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc--c
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGL--RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--I 158 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--l 158 (510)
..+++++.++.+. +..+. .+ ++++.|++.+|. +....+. +..+++|++|+++ ++.+.. +
T Consensus 48 ~~~~l~l~~~~~~--~~~~~----~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~-------~~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTG----RLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLS-------NSVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC--HHHHH----HHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECT-------TCEECHHHH
T ss_pred hheeeccccccCC--HHHHH----hhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEcc-------CCCcCHHHH
Confidence 3556666555443 22222 44 777788887776 3332333 4567778888887 666543 5
Q ss_pred cccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccc--cCchhhhccccCceeecCCC-ccccc-ccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR--ELPRGIGKLRKLMYLHNEGT-DSLRY-LPAGI 234 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~p~~l 234 (510)
|..+..+++|++|++++|......|..+..+++|++|++++|..+. .+|..+..+++|++|++++| ..... ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 6667777888888888777333566677777888888888774344 35666777788888888777 33221 45556
Q ss_pred cCcc-cccccCcEEEe--CccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcc
Q 010462 235 GELI-RLRSVRKFVVG--GGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEE 311 (510)
Q Consensus 235 ~~l~-~L~~L~l~~~~--~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 311 (510)
..++ +|+.|++.++. ... ......+..+++|+.|++.++..+.. .....+..+++|+.|++++|. .
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~-~----- 259 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCY-D----- 259 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCT-T-----
T ss_pred HhcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCC-C-----
Confidence 6666 77777666552 111 11222334455566666655432221 122344555666666666653 0
Q ss_pred cccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhh-hcccceeccCccCCCcCCC
Q 010462 312 RAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSL-TNLRFLFLFGWRNCEHLPP 378 (510)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l-~~L~~L~L~~~~~~~~l~~ 378 (510)
........+..+++|+.|++++| ... ..+..+ .++..|++++|...+..|.
T Consensus 260 ----------~~~~~~~~l~~~~~L~~L~l~~~-i~~-----~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 260 ----------IIPETLLELGEIPTLKTLQVFGI-VPD-----GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp ----------CCGGGGGGGGGCTTCCEEECTTS-SCT-----TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ----------CCHHHHHHHhcCCCCCEEeccCc-cCH-----HHHHHHHhhCcceEEecccCccccCC
Confidence 11112233445667777777766 221 223333 3466666666655544443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=9.3e-19 Score=170.48 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred cCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEecccccccccccccc----ccccc-------cccCccceEec
Q 010462 106 KGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKK----IPTNI-------EKLLHLKYLSL 173 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----lp~~i-------~~l~~L~~L~l 173 (510)
..+++|+.|++++|.+.... ..++..+..+++|++|+++ ++.+.. +|..+ ..+++|++|++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 36777777777777621110 0123335677777777777 543332 23333 56777777777
Q ss_pred cCCCCccc-----cchhhhcccccceeccCCCCcccc----Cchhhhcc---------ccCceeecCCCcc
Q 010462 174 FGQKKIEK-----LPETLCELYNLERLNVDHCKNLRE----LPRGIGKL---------RKLMYLHNEGTDS 226 (510)
Q Consensus 174 ~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~ 226 (510)
++|. ++. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|..
T Consensus 102 s~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 7777 444 666677777777777777763221 22333334 6777777777643
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.8e-17 Score=151.72 Aligned_cols=125 Identities=23% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-T 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~ 185 (510)
.+++|+.|.+.+|. +.. ++. +..+++|++|+++ +|.+..++ .+..+++|++|++++|. ++.+|. .
T Consensus 39 ~l~~L~~L~l~~~~---i~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVRYLALG-------GNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECT-------TSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCC---ccc-ccc-cccCCCCcEEECC-------CCCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 56677777777765 222 222 6667777777777 66666653 56667777777777776 555543 3
Q ss_pred hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 186 LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
+.++++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|+.|++.
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 5667777777777776 444443 35667777777777763322222224455555555444
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=2.6e-18 Score=167.37 Aligned_cols=245 Identities=19% Similarity=0.093 Sum_probs=129.4
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc----ccchhh-------hcccc
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----KLPETL-------CELYN 191 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~-------~~l~~ 191 (510)
++..+..+++|++|+++ +|.+.. ++..+..+++|++|++++|. +. .+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~-------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECT-------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECC-------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 34446666667777776 555443 33345566677777776653 22 233333 45667
Q ss_pred cceeccCCCCccc----cCchhhhccccCceeecCCCccccc----ccccccCc---------ccccccCcEEEeCcc-C
Q 010462 192 LERLNVDHCKNLR----ELPRGIGKLRKLMYLHNEGTDSLRY----LPAGIGEL---------IRLRSVRKFVVGGGY-D 253 (510)
Q Consensus 192 L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~-~ 253 (510)
|++|+|++|.... .+|..+.++++|++|++++|..... ++..+..+ ++|++|++..+.... .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 7777777666332 2555666667777777776643221 22223333 566666666555432 0
Q ss_pred CccCcccccccccCCCceecCcccCCChhhhhHh-hccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCC
Q 010462 254 RACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRA-ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGP 332 (510)
Q Consensus 254 ~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (510)
.......+..+++|+.|++.++.-.......... .+..+++|+.|++++|.. .......++..+..
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-------------~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------------THLGSSALAIALKS 242 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-------------HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-------------CcHHHHHHHHHHcc
Confidence 0111123445556666666653211101111222 555666777777776651 00112445556666
Q ss_pred CCCccEEEEeecCCccCC---CchhHHhh--hhcccceeccCccCCC----cCCC-C-CCCCccceeeccCcc
Q 010462 333 PPNLKKLRIDEYRGRRNV---VPISWFMS--LTNLRFLFLFGWRNCE----HLPP-L-GKLPSLEYLEIEGMK 394 (510)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~---~p~~~~~~--l~~L~~L~L~~~~~~~----~l~~-~-~~l~~L~~L~L~~~~ 394 (510)
+++|++|++++|.+.... ++ .++.. +++|++|+|++|.... .+|. + .++++|++|+|++|+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 677777777777654310 12 23322 6677777777775444 2443 3 456777777777765
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=4.7e-17 Score=150.66 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=151.8
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP- 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp- 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.+..|..+++|++|+++ +|.+..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~----~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred CCccEEECCCCcccccCHhHhc----cccCCcEEECCCCc---CCccCHHHccCCcCCCEEECC-------CCccCccCh
Confidence 779999999998876544 344 89999999999998 556566679999999999999 99988875
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCcccc--CchhhhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..+.++++|++|++++|. +..++. .+..+++|++|++++|. +.. +|..+..+++|++|++++|......+..+..
T Consensus 94 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 678999999999999999 666655 68999999999999998 544 7899999999999999999655555566777
Q ss_pred ccccc----ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 237 LIRLR----SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 237 l~~L~----~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
+.+|+ .|++..+.... .........+|+.|++.+.. +. ......+..+++|+.|++++|.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~----~~~~~~~~~~L~~L~L~~n~-l~---~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNF----IQPGAFKEIRLKELALDTNQ-LK---SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCE----ECTTSSCSCCEEEEECCSSC-CS---CCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccc----cCccccCCCcccEEECCCCc-ee---ecCHhHhcccccccEEEccCCc
Confidence 77777 44454444432 11112222357777777532 22 1223346778999999999886
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1e-16 Score=147.77 Aligned_cols=195 Identities=23% Similarity=0.307 Sum_probs=124.8
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc-c
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-I 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~-i 162 (510)
.+.+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ ++.+..+|.. +
T Consensus 18 ~~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~i~~~~~ 81 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP------ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLN-------DNKLQTLPAGIF 81 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECC-------SSCCSCCCTTTT
T ss_pred CCEEEccCCCCCccCCCCC------CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECC-------CCccCeeChhhh
Confidence 4556666666665554432 567777777776 444445557777778888877 7777777544 4
Q ss_pred cccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|++++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .++.+++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcc
Confidence 667778888887777 666554 35677778888887777 44443 4467777788888777743 44443 3677777
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
|+.|++..+.... .....+..+++|+.|++.+..- . ......+..+++|+.|++++|.
T Consensus 159 L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l-~---~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 159 LKELRLYNNQLKR---VPEGAFDKLTELKTLKLDNNQL-K---RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCC-S---CCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCcCcE---eChhHhccCCCcCEEECCCCcC-C---cCCHHHhccccCCCEEEecCCC
Confidence 7777776665542 1223355666777777765321 1 1122345677889999998886
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=4.2e-17 Score=147.53 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=33.6
Q ss_pred CCCCCCcc-EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCC-CccceeeccCcc
Q 010462 330 LGPPPNLK-KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKL-PSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~~~~L~-~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l-~~L~~L~L~~~~ 394 (510)
+..+++|+ .|++++|.... +|...+.. ++|+.|++++|+.+..++. +..+ ++|+.|++++|.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred ccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 44455666 66666666554 55222223 5666666666643333332 5556 666666666654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.9e-16 Score=146.64 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=155.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+...+ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~----~l~~L~~L~L~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQ----YLNNLIGLELKDNQ---ITD-LAP-LKNLTKITELELS-------GNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCCSCCEEECC-------SCCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-hhh----ccCCCCEEEccCCc---CCC-Chh-HccCCCCCEEEcc-------CCcCCCch-h
Confidence 67899999988877654 344 89999999999998 445 344 8999999999999 99988886 5
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. ++.+|. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCC
Confidence 8899999999999999 888886 9999999999999998 777776 8999999999999994 455655 88999999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.|++..+.... +..+..+++|+.|++.+..- .... .+..+++|+.|++++|.
T Consensus 177 ~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISD-----ISPLASLPNLIEVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCCEEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCc-----ChhhcCCCCCCEEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence 99998876653 23377888899999887432 2111 37789999999999997
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.7e-16 Score=152.17 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred CccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 335 NLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 335 ~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
.++.|++++|.+.. +| .......+|+.|.+.++..++.+|. ++.+++|++|+|++|. ++.+|..
T Consensus 155 ~l~~L~L~~N~i~~--i~-~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---------- 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--IH-NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---------- 220 (350)
T ss_dssp SCEEEECCSSCCCE--EC-TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------
T ss_pred hhhhhccccccccC--CC-hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------
Confidence 45555566555554 44 2223345566666655545555553 5566666666666654 4444321
Q ss_pred CccccccccccccccccccccccccccccccccccCcccceeeecc
Q 010462 413 SSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWS 458 (510)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 458 (510)
.|.+|+.|.+.++.+++.+.. +..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 344445554444444444321 23455666666543
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=2.7e-17 Score=158.54 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCccEEEeccCCcCccccchh----HhhhcCC-ceeEEEeccccccccccccccc-ccccccc-----CccceEeccCCC
Q 010462 109 RGLRSLLVESGEYSWSNEILP----QLFDKLT-CLRALKLEVREQGLYTNFIKKI-PTNIEKL-----LHLKYLSLFGQK 177 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~ 177 (510)
++|+.|++++|. +....+ ..|..++ +|++|+++ +|.+... +..+..+ ++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLS-------GNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSC---GGGSCHHHHHHHHHTCCTTCCEEECC-------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCC---CChHHHHHHHHHHHhCCCceeEEECc-------CCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 346666666665 222222 4455555 56666666 5555443 3334443 566666666666
Q ss_pred Ccccc-chhh----hcc-cccceeccCCCCccccCc-hhhh----c-cccCceeecCCCc
Q 010462 178 KIEKL-PETL----CEL-YNLERLNVDHCKNLRELP-RGIG----K-LRKLMYLHNEGTD 225 (510)
Q Consensus 178 ~~~~l-p~~~----~~l-~~L~~L~L~~~~~~~~lp-~~~~----~-l~~L~~L~l~~~~ 225 (510)
++.. +..+ ..+ ++|++|++++|. +...+ ..+. . .++|++|++++|.
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 4332 2222 223 566666666666 33332 2222 2 2456666666653
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=6.8e-16 Score=147.90 Aligned_cols=238 Identities=16% Similarity=0.129 Sum_probs=156.4
Q ss_pred eEEEeccccccccccccccccccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccC
Q 010462 139 RALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKL 216 (510)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L 216 (510)
++++.+ ++.+..+|..+ ..++++|+|++|. ++.+|. +|.++++|++|+|++|...+.+|. .+.++++|
T Consensus 12 ~~v~C~-------~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQ-------ESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp TEEEEE-------STTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CEEEec-------CCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 456666 77777787766 3578888888887 777775 467788888888888875555654 35667776
Q ss_pred ceeec-CCCcccccc-cccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 217 MYLHN-EGTDSLRYL-PAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 217 ~~L~l-~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
+.+.. .+| .+..+ |..++.+++|+.|++..+....
T Consensus 82 ~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~------------------------------------------ 118 (350)
T 4ay9_X 82 HEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKH------------------------------------------ 118 (350)
T ss_dssp CEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSS------------------------------------------
T ss_pred hhhhcccCC-cccccCchhhhhcccccccccccccccc------------------------------------------
Confidence 65433 334 33333 3445666666666665554331
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhh-hcccceeccCccCC
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSL-TNLRFLFLFGWRNC 373 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l-~~L~~L~L~~~~~~ 373 (510)
. ....+....++..|++.++..... ++...+..+ ..++.|++++|...
T Consensus 119 -------------~-----------------~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 119 -------------L-----------------PDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp -------------C-----------------CCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCC
T ss_pred -------------C-----------------Cchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccccc
Confidence 0 000111223345555544332221 332333333 46889999999544
Q ss_pred CcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 374 EHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 374 ~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
.++. ....++|++|.+.++..++.++.+.+ ..+++|+.|+++++. ++.+.. ..+.+|+
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-----------~~l~~L~~LdLs~N~-l~~lp~--------~~~~~L~ 226 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----------HGASGPVILDISRTR-IHSLPS--------YGLENLK 226 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTT-----------TTEECCSEEECTTSC-CCCCCS--------SSCTTCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHh-----------ccCcccchhhcCCCC-cCccCh--------hhhccch
Confidence 4544 56678999999998877888876543 378999999999985 766542 2578889
Q ss_pred eeeeccCcccccCCcccCCCCCCcEEEEcC
Q 010462 453 SLTIWSCRKLKALPDHLLQKTTLQKLHIRR 482 (510)
Q Consensus 453 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 482 (510)
.|.+.+|..++.+| .+..+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 99999999999999 477899999999975
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=8.9e-17 Score=154.89 Aligned_cols=254 Identities=13% Similarity=0.042 Sum_probs=136.6
Q ss_pred EeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-----ccccccC-ccceEeccCCCCcccc-chhhh
Q 010462 115 LVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-----TNIEKLL-HLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
.++.|. +.+.+|.++...++|++|+++ +|.+...+ ..+.+++ +|++|++++|. ++.. +..+.
T Consensus 4 ~ls~n~---~~~~~~~~~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 72 (362)
T 3goz_A 4 KLTLHP---GSNPVEEFTSIPHGVTSLDLS-------LNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELV 72 (362)
T ss_dssp ECCCCT---TCCHHHHHHTSCTTCCEEECT-------TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred cccccc---chHHHHHHHhCCCCceEEEcc-------CCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHH
Confidence 445554 344456655555557777777 66666553 4555666 67777777776 4443 44455
Q ss_pred cc-----cccceeccCCCCccccCchhhh----cc-ccCceeecCCCccccccccc----ccC-cccccccCcEEEeCcc
Q 010462 188 EL-----YNLERLNVDHCKNLRELPRGIG----KL-RKLMYLHNEGTDSLRYLPAG----IGE-LIRLRSVRKFVVGGGY 252 (510)
Q Consensus 188 ~l-----~~L~~L~L~~~~~~~~lp~~~~----~l-~~L~~L~l~~~~~~~~~p~~----l~~-l~~L~~L~l~~~~~~~ 252 (510)
.+ ++|++|++++|......+..+. .+ ++|++|++++|......+.. +.. .++|++|++..+....
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 54 6777777777773333333333 33 67777777777543322222 222 2467777666655442
Q ss_pred CCc-cCcccccccc-cCCCceecCcccCCChhhhhHhhccCC-CCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhcc
Q 010462 253 DRA-CSLGSLKKLN-LLRDCRIRGLGDVSDAGEARRAELEKK-KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEA 329 (510)
Q Consensus 253 ~~~-~~~~~l~~l~-~L~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (510)
... .....+..++ +|+.|++.++.-...........+... ++|+.|++++|.... .....++..
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------------~~~~~l~~~ 219 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-------------KSYAELAYI 219 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------------SCHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-------------hHHHHHHHH
Confidence 100 1112223333 666666665432222222333344445 477777777775111 112233444
Q ss_pred CCC-CCCccEEEEeecCCccCCCchh----HHhhhhcccceeccCccCCC-------cCC-CCCCCCccceeeccCcc
Q 010462 330 LGP-PPNLKKLRIDEYRGRRNVVPIS----WFMSLTNLRFLFLFGWRNCE-------HLP-PLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~-~~~L~~L~l~~~~~~~~~~p~~----~~~~l~~L~~L~L~~~~~~~-------~l~-~~~~l~~L~~L~L~~~~ 394 (510)
+.. .++|+.|++++|.+.. .+.. .+..+++|+.|++++|.... .++ .+..+++|+.|++++|.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 433 3577788887777665 3311 22356778888887775211 112 25677888888888876
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=143.92 Aligned_cols=202 Identities=19% Similarity=0.090 Sum_probs=113.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhh--hcCCceeEEEeccccccccccccccc-c----ccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLF--DKLTCLRALKLEVREQGLYTNFIKKI-P----TNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l-p----~~i~~l~~L~~L~l~~~~~~ 179 (510)
.+++|+.|++++|. +....|..+ ..+++|++|+++ +|.+... + ..+..+++|++|++++|. +
T Consensus 89 ~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls-------~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l 157 (310)
T 4glp_A 89 AYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLR-------NVSWATGRSWLAELQQWLKPGLKVLSIAQAH-S 157 (310)
T ss_dssp HHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEE-------SCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-S
T ss_pred ccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEee-------cccccchhhhhHHHHhhhccCCCEEEeeCCC-c
Confidence 34567777777776 333344444 667777777777 6665532 1 233456777777777777 4
Q ss_pred ccc-chhhhcccccceeccCCCCcccc--Cc--hhhhccccCceeecCCCccccccccc----ccCcccccccCcEEEeC
Q 010462 180 EKL-PETLCELYNLERLNVDHCKNLRE--LP--RGIGKLRKLMYLHNEGTDSLRYLPAG----IGELIRLRSVRKFVVGG 250 (510)
Q Consensus 180 ~~l-p~~~~~l~~L~~L~L~~~~~~~~--lp--~~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~ 250 (510)
..+ |..+..+++|++|++++|..... ++ ..++.+++|++|++++|.. ..+|.. ++.+++|++|+++++..
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 443 35566777777777777763221 22 2235667777777777733 333331 35566777776665544
Q ss_pred ccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 251 GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 251 ~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
... .+..+..+ ..+++|+.|++++|... .++..+
T Consensus 237 ~~~---~p~~~~~~-------------------------~~~~~L~~L~Ls~N~l~------------------~lp~~~ 270 (310)
T 4glp_A 237 RAT---VNPSAPRC-------------------------MWSSALNSLNLSFAGLE------------------QVPKGL 270 (310)
T ss_dssp CCC---CCSCCSSC-------------------------CCCTTCCCEECCSSCCC------------------SCCSCC
T ss_pred Ccc---chhhHHhc-------------------------cCcCcCCEEECCCCCCC------------------chhhhh
Confidence 320 01111111 11235555555555411 122223
Q ss_pred CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccC
Q 010462 331 GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRN 372 (510)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 372 (510)
+++|+.|++++|.+.. +| . +..+++|+.|++++|..
T Consensus 271 --~~~L~~L~Ls~N~l~~--~~-~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 --PAKLRVLDLSSNRLNR--AP-Q-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp --CSCCSCEECCSCCCCS--CC-C-TTSCCCCSCEECSSTTT
T ss_pred --cCCCCEEECCCCcCCC--Cc-h-hhhCCCccEEECcCCCC
Confidence 2678888888887776 56 3 46778888888888754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=2.5e-15 Score=136.81 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=95.2
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i 162 (510)
.+++++.++....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..++ ..+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~ 79 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLD-------YNQLQTLSAGVF 79 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC------TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTTTT
T ss_pred CeEEecCCCCccccCCCCC------CCCCEEEccCCC---cCccCHhHhcCcccCCEEECC-------CCcCCccCHhHh
Confidence 3455666666665555443 567777777776 444455557777777777777 77766663 446
Q ss_pred cccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|. .++.+++
T Consensus 80 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 156 (251)
T 3m19_A 80 DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156 (251)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred ccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcC
Confidence 677777777777777 55554 345677777777777776 5555544 46677777777777743 34443 4666677
Q ss_pred ccccCcEEEeC
Q 010462 240 LRSVRKFVVGG 250 (510)
Q Consensus 240 L~~L~l~~~~~ 250 (510)
|+.|++..+..
T Consensus 157 L~~L~L~~N~l 167 (251)
T 3m19_A 157 LQTLSLSTNQL 167 (251)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcC
Confidence 77776655433
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=5.8e-15 Score=129.00 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=115.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-IPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-lp~ 160 (510)
..+++|.+.++.+..++ .+. .+++|+.|++++|. +.. ++ .+..+++|++|+++ +|.+.. .|.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~l~~n~---~~~-~~-~l~~l~~L~~L~l~-------~n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE----YAHNIKDLTINNIH---ATN-YN-PISGLSNLERLRIM-------GKDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG----GCTTCSEEEEESCC---CSC-CG-GGTTCTTCCEEEEE-------CTTCBGGGSC
T ss_pred CCccEEeccCCCccChH-HHh----cCCCCCEEEccCCC---CCc-ch-hhhcCCCCCEEEeE-------CCccCcccCh
Confidence 67888999888877555 444 88999999999986 333 33 37888999999998 888775 577
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
.++.+++|++|++++|.+....|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKL 183 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence 88889999999999998433467778899999999999987677777 58889999999999884 44455 67778888
Q ss_pred cccCcEEEeC
Q 010462 241 RSVRKFVVGG 250 (510)
Q Consensus 241 ~~L~l~~~~~ 250 (510)
+.|++.++.+
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 8888776554
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=4.8e-15 Score=134.96 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=129.2
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.|.+.++.+...+.. .+..+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+| .
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLA-------NNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECC-------CCcccccChh
Confidence 7899999999988764432 23489999999999998 555577778999999999999 99998886 5
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
.+..+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 67889999999999999 7777765 6889999999999998 667766 588999999999999965544445788899
Q ss_pred cccccCcEEEeCc
Q 010462 239 RLRSVRKFVVGGG 251 (510)
Q Consensus 239 ~L~~L~l~~~~~~ 251 (510)
+|+.|++.++...
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999988776553
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=2.8e-15 Score=152.89 Aligned_cols=173 Identities=23% Similarity=0.243 Sum_probs=89.7
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
+..+++|+.|+++ ++.+..+| .+..+++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+.
T Consensus 39 ~~~L~~L~~L~l~-------~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIAN-------NSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCT-------TCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hhcCCCCCEEECc-------CCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 3445555555555 55555554 35555555555555555 444544 5555555555555555 44444 355
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~ 291 (510)
.+++|++|++++|.. ..++ .+..+++|+.|++..+.... + ..+..
T Consensus 107 ~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~ 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITD-----I----------------------------TVLSR 151 (605)
T ss_dssp TCTTCCEEECTTSCC-CCCG-GGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGS
T ss_pred cCCCCCEEEecCCCC-CCCc-cccCCCccCEEECCCCccCC-----c----------------------------hhhcc
Confidence 555555555555532 2222 23344444444333221110 0 12233
Q ss_pred CCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc
Q 010462 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+++|+.|+++.|... . .+. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.
T Consensus 152 l~~L~~L~Ls~N~l~-----------------~-~~~-l~~l~~L~~L~Ls~N~i~~--l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQIS-----------------D-IVP-LAGLTKLQNLYLSKNHISD--LR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCC-----------------C-CGG-GTTCTTCCEEECCSSCCCB--CG--GGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCC-----------------C-chh-hccCCCCCEEECcCCCCCC--Ch--HHccCCCCCEEEccCCc
Confidence 445555555555411 1 111 5566777778887777665 55 35677777777777775
Q ss_pred CCC
Q 010462 372 NCE 374 (510)
Q Consensus 372 ~~~ 374 (510)
...
T Consensus 209 l~~ 211 (605)
T 1m9s_A 209 CLN 211 (605)
T ss_dssp EEC
T ss_pred CcC
Confidence 443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=9.6e-15 Score=135.87 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=66.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+...+ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..+|.
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~----~l~~L~~L~L~~n~---l~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGGG-
T ss_pred CcccEEEccCCCcccCh-hHh----cCCCCCEEEccCCc---cCC-Ccc-cccCCCCCEEECC-------CCcCCCChh-
Confidence 34455555554444332 122 45555555555554 222 122 4555555555555 555544433
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|++|++++|.. ..++. +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccC
Confidence 4555555555555555 44443 25555555555555555 3333 2355555555555555522 22222 44444444
Q ss_pred ccCcE
Q 010462 242 SVRKF 246 (510)
Q Consensus 242 ~L~l~ 246 (510)
.|++.
T Consensus 182 ~L~L~ 186 (291)
T 1h6t_A 182 NLYLS 186 (291)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 44443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=3.6e-15 Score=130.30 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +.. +| .+..+++|++|+++ +|.+..++ .+..+++|++|++++|.+....|..+
T Consensus 42 ~l~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~l~-------~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANIN---VTD-LT-GIEYAHNIKDLTIN-------NIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSC---CSC-CT-TGGGCTTCSEEEEE-------SCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCC---ccC-hH-HHhcCCCCCEEEcc-------CCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 78899999999997 444 45 38899999999999 88776664 68889999999999998333467789
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
..+++|++|++++|......|..+..+++|++|++++|..+..+| .++.+++|+.|++..+...
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 999999999999999555678889999999999999996566666 5777888888877655443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=9e-15 Score=130.04 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=89.9
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.++
T Consensus 16 v~c~~~~l~~iP~~l~------~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls-------~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP------ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLS-------NNQISELAPDAFQGL 79 (220)
T ss_dssp EECTTSCCSSCCSSCC------TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECC-------SSCCCEECTTTTTTC
T ss_pred EEcCCCCcCcCCCccC------cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECC-------CCcCCCcCHHHhhCC
Confidence 3444444444444332 567777777776 444445556777777777777 6766666 5667777
Q ss_pred CccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccC
Q 010462 166 LHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVR 244 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 244 (510)
++|++|+|++|. ++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 777777777777 6666654 46677777777777773333355566777777777777744333334466666666666
Q ss_pred cEEE
Q 010462 245 KFVV 248 (510)
Q Consensus 245 l~~~ 248 (510)
+..+
T Consensus 159 L~~N 162 (220)
T 2v9t_B 159 LAQN 162 (220)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 5544
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.2e-15 Score=136.03 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=97.4
Q ss_pred CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+..+..++++ ++.+..++ .+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +.+++
T Consensus 18 l~~l~~l~l~-------~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLG-------KQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHT-------CSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHhc-------CCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 4445555555 55555554 45556666666666665 55565 36666666666666665 555554 66666
Q ss_pred cCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
+|++|++++|. +..+|... . ++
T Consensus 86 ~L~~L~L~~N~-l~~l~~~~-~--------------------------------------------------------~~ 107 (263)
T 1xeu_A 86 KLEELSVNRNR-LKNLNGIP-S--------------------------------------------------------AC 107 (263)
T ss_dssp SCCEEECCSSC-CSCCTTCC-C--------------------------------------------------------SS
T ss_pred CCCEEECCCCc-cCCcCccc-c--------------------------------------------------------Cc
Confidence 66666666652 22222110 0 22
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCC
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCE 374 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 374 (510)
|+.|++++|... . ...+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|...
T Consensus 108 L~~L~L~~N~l~------------------~-~~~l~~l~~L~~L~Ls~N~i~~--~~--~l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 108 LSRLFLDNNELR------------------D-TDSLIHLKNLEILSIRNNKLKS--IV--MLGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp CCEEECCSSCCS------------------B-SGGGTTCTTCCEEECTTSCCCB--CG--GGGGCTTCCEEECTTSCCC-
T ss_pred ccEEEccCCccC------------------C-ChhhcCcccccEEECCCCcCCC--Ch--HHccCCCCCEEECCCCcCc-
Confidence 333333333200 0 1224556677777777777665 55 4667888888888888543
Q ss_pred cCCCCCCCCccceeeccCcc
Q 010462 375 HLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 375 ~l~~~~~l~~L~~L~L~~~~ 394 (510)
.++.+..+++|+.|++++|+
T Consensus 164 ~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BCTTSTTCCCCCEEEEEEEE
T ss_pred chHHhccCCCCCEEeCCCCc
Confidence 34668888889999988876
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.5e-14 Score=129.52 Aligned_cols=145 Identities=28% Similarity=0.373 Sum_probs=104.3
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~ 164 (510)
.+...++....+|..+ .++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+|. .+..
T Consensus 23 ~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-------~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI------PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-------SNQLGALPVGVFDS 86 (229)
T ss_dssp EEECTTSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EeEccCCCcCccCCCC------CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-------CCCCCCcChhhccc
Confidence 3455555555555543 3778888888887 455456677888888888888 888877764 4577
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRS 242 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 242 (510)
+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.
T Consensus 87 l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 87 LTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTH 163 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCE
Confidence 8888888888887 6666554 5778888888888887 668888888888888888888844 4444 44677777777
Q ss_pred cCcEEEe
Q 010462 243 VRKFVVG 249 (510)
Q Consensus 243 L~l~~~~ 249 (510)
|++.++.
T Consensus 164 L~l~~N~ 170 (229)
T 3e6j_A 164 AYLFGNP 170 (229)
T ss_dssp EECTTSC
T ss_pred EEeeCCC
Confidence 7766544
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1e-13 Score=128.95 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=126.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+...+. +. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..++ .
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~----~l~~L~~L~l~~n~---l~~-~~~-l~~l~~L~~L~L~-------~n~i~~~~-~ 129 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LA----NLKNLGWLFLDENK---VKD-LSS-LKDLKKLKSLSLE-------HNGISDIN-G 129 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GT----TCTTCCEEECCSSC---CCC-GGG-GTTCTTCCEEECT-------TSCCCCCG-G
T ss_pred CCCCEEEccCCccCCCcc-cc----cCCCCCEEECCCCc---CCC-Chh-hccCCCCCEEECC-------CCcCCCCh-h
Confidence 789999999998876554 44 99999999999998 444 444 8999999999999 99988874 6
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 130 l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLD 203 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCS
T ss_pred hcCCCCCCEEEccCCc-CCcch-hhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc-CCCChh-hccCCCCC
Confidence 8899999999999999 88884 59999999999999998 777776 9999999999999994 456664 88999999
Q ss_pred ccCcEEEeCcc
Q 010462 242 SVRKFVVGGGY 252 (510)
Q Consensus 242 ~L~l~~~~~~~ 252 (510)
.|++..+....
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 99999987654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=127.18 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccch-hHhhhcCCceeEEEeccccccccccccccccc-ccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEIL-PQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIE 163 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~ 163 (510)
.+.+.++.+..+|..+. +.++.|++++|. +..+. +..|..+++|++|+++ +|.+..++. .|.
T Consensus 15 ~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP------QYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFS-------NNKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCCC------CCCCEEEcCCCc---CCccCchhhhccCCCCCEEECC-------CCcCCEECHHHhC
Confidence 56666666666665443 456788888887 43432 2347788888888888 888777753 677
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 88888888888888 555544 4778888888888888844444667788888888888888554555677777888887
Q ss_pred cCcEEEeC
Q 010462 243 VRKFVVGG 250 (510)
Q Consensus 243 L~l~~~~~ 250 (510)
|++..+..
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 77765543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=7.6e-14 Score=127.64 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=120.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~L~~N~---i~~-~~~-l~~l~~L~~L~L~-------~N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQ----FFTNLKELHLSHNQ---ISD-LSP-LKDLTKLEELSVN-------RNRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCSSCCEEECC-------SSCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-HHh----hCCCCCEEECCCCc---cCC-Chh-hccCCCCCEEECC-------CCccCCcCcc
Confidence 77899999998877655 344 89999999999998 445 333 8899999999999 9998888764
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.. .+|++|++++|. ++.+|. +..+++|+.|++++|. +..+| .+..+++|++|++++|.. ..+ ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCC
Confidence 33 899999999998 888775 8999999999999998 77776 588999999999999954 444 5688899999
Q ss_pred ccCcEEEeCcc
Q 010462 242 SVRKFVVGGGY 252 (510)
Q Consensus 242 ~L~l~~~~~~~ 252 (510)
.|++.++....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99999887654
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=3.9e-14 Score=120.31 Aligned_cols=131 Identities=24% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccc-cch
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~ 184 (510)
..++|+.|++++|. +. ..+|..+..+++|++|+++ +|.+..+ ..+..+++|++|++++|. +.. +|.
T Consensus 22 ~~~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLI-------NVGLISV-SNLPKLPKLKKLELSENR-IFGGLDM 89 (168)
T ss_dssp CTTSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEE-------SSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCH
T ss_pred CcccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCc-------CCCCCCh-hhhccCCCCCEEECcCCc-CchHHHH
Confidence 34667777777776 32 1245546677777777777 6666666 566677777777777777 444 666
Q ss_pred hhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCcccccccc----cccCcccccccCcEEEeCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLPA----GIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~~~~~~ 251 (510)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66667777777777776 55554 5566777777777777733 34443 5666777777776665443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.3e-14 Score=145.02 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=80.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++ .+. .+++|+.|+|++|. +.. ++. +..+++|+.|+|+ +|.+..+| .
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~Ls-------~N~l~~l~-~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LTNLKNLGWLFLD-------ENKIKDLS-S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGG----GCTTCCEEECTTSC---CCC-CGG-GGGCTTCCEEECC-------SSCCCCCT-T
T ss_pred CCCCEEECcCCCCCCCh-HHc----cCCCCCEEEeeCCC---CCC-Chh-hccCCCCCEEECc-------CCCCCCCh-h
Confidence 34445555554444332 122 55555555555555 222 122 5555555555555 55555544 3
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+ ..+..+++|+.|++++|.. ..++. +..+++|+
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQ 178 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCC
T ss_pred hccCCCCCEEEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCC
Confidence 5555555555555555 444433 5555555555555555 4444 2355555555555555533 22222 55555555
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRG 274 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~ 274 (510)
.|++..+.... +..+..+++|+.|++.+
T Consensus 179 ~L~Ls~N~i~~-----l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 179 NLYLSKNHISD-----LRALAGLKNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCCB-----CGGGTTCTTCSEEECCS
T ss_pred EEECcCCCCCC-----ChHHccCCCCCEEEccC
Confidence 55555444332 12344444444444443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=4.4e-14 Score=142.48 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=75.4
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i 162 (510)
+++.|++.++.+..+|..+ +++|+.|++++|. +.. +| ..+++|++|+++ +|.+..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l------~~~L~~L~Ls~N~---l~~-ip---~~l~~L~~L~Ls-------~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL------PPQITVLEITQNA---LIS-LP---ELPASLEYLDAC-------DNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC------CTTCSEEECCSSC---CSC-CC---CCCTTCCEEECC-------SSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhH------cCCCCEEECcCCC---Ccc-cc---cccCCCCEEEcc-------CCCCCCcch-h
Confidence 4666666666655444332 2556666666665 222 33 335666666666 666666665 4
Q ss_pred cccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+ +|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++|. +..+|. +. ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCE
Confidence 44 66666666666 555665 45666666666666 555655 45666666666663 333555 43 55555
Q ss_pred cCcEEE
Q 010462 243 VRKFVV 248 (510)
Q Consensus 243 L~l~~~ 248 (510)
|++..+
T Consensus 185 L~Ls~N 190 (571)
T 3cvr_A 185 LDVSTN 190 (571)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.2e-13 Score=121.71 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=85.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+...+... +..+++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLS-------TNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChhh---hcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECC-------CCcCCccCHh
Confidence 55666666666655433321 2266667777777665 334344445666677777776 6666666433
Q ss_pred -ccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcc
Q 010462 162 -IEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 162 -i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
+..+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|... +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4566677777777666 5555443 5666677777777666 4444443 556667777777666322 2344
Q ss_pred cccccCcEEEeC
Q 010462 239 RLRSVRKFVVGG 250 (510)
Q Consensus 239 ~L~~L~l~~~~~ 250 (510)
+|+.|.++.+..
T Consensus 166 ~l~~L~~~~n~~ 177 (208)
T 2o6s_A 166 GIRYLSEWINKH 177 (208)
T ss_dssp TTHHHHHHHHHC
T ss_pred CHHHHHHHHHhC
Confidence 555555544433
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=5.3e-14 Score=119.50 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=111.9
Q ss_pred CceeEEEEEeecCC--CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGA--SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
..+++|.+.++.+. .++..+. .+++|+.|++++|. +..+ ..+..+++|++|+++ +|.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELS-------ENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEE-------SCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECc-------CCcCchHH
Confidence 78999999999887 4555544 89999999999998 4442 448899999999999 999888 6
Q ss_pred cccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCch----hhhccccCceeecCCCcccccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNEGTDSLRYLPA 232 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~ 232 (510)
|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. ...+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 7777789999999999998 88876 678999999999999998 777776 78899999999999994 455554
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=3.2e-14 Score=143.48 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=34.3
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL 216 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 216 (510)
+|++|+++ ++.+..+|..+. ++|++|++++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 60 ~L~~L~Ls-------~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN-------RLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC-------SSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC-------CCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 45555555 444444544332 445555555554 44444 234455555555554 333444 333 55
Q ss_pred ceeecCCC
Q 010462 217 MYLHNEGT 224 (510)
Q Consensus 217 ~~L~l~~~ 224 (510)
++|++++|
T Consensus 123 ~~L~Ls~N 130 (571)
T 3cvr_A 123 KHLDVDNN 130 (571)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555555
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=4.2e-14 Score=117.49 Aligned_cols=125 Identities=24% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccc-cch
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~ 184 (510)
..++|+.|++++|. +. ..+|..+..+++|++|+++ +|.+..+ ..++.+++|++|++++|. +.. +|.
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTI-------NVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECT-------TSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CCccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECc-------CCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 34667777777776 32 2245556777777777777 6666666 556677777777777777 444 666
Q ss_pred hhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCcccccccc----cccCcccccccCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLPA----GIGELIRLRSVRK 245 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l 245 (510)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .++.+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 66667777777777777 55543 5677777777777777733 33443 4666666666654
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.6e-13 Score=121.05 Aligned_cols=146 Identities=25% Similarity=0.296 Sum_probs=113.8
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~ 164 (510)
.+...++....++..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+|. .+..
T Consensus 11 ~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI------PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLG-------GNKLQSLPNGVFNK 74 (208)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEecCCCccCCCCCC------CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECC-------CCccCccChhhcCC
Confidence 3445555555555443 4689999999998 455566678999999999999 999988865 4678
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|+.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 9999999999999 7777654 6899999999999998 6666654 788999999999999554333344778888888
Q ss_pred cCcEEEe
Q 010462 243 VRKFVVG 249 (510)
Q Consensus 243 L~l~~~~ 249 (510)
|++..+.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8877653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.7e-13 Score=119.74 Aligned_cols=130 Identities=27% Similarity=0.351 Sum_probs=112.7
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|.+.++.+... +..+. .+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+|.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls-------~N~l~~l~~ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD----SLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLG-------TNQLTVLPS 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCCEEEcCCCccCccCHHHhh----CccCCcEEECCCCC---CCCcChhhcccCCCcCEEECC-------CCcCCccCh
Confidence 8899999999998864 33344 89999999999998 556566778999999999999 999999865
Q ss_pred -cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCccc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 227 (510)
.+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|+.|++++|...
T Consensus 106 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 46889999999999999 88999999999999999999998 667764 5888999999999999643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.5e-15 Score=153.93 Aligned_cols=193 Identities=17% Similarity=0.084 Sum_probs=113.2
Q ss_pred hcCCceeEEEeccccccccccccccccccccccCccceEeccCCC-------------Cccccchhhhcccccceec-cC
Q 010462 133 DKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQK-------------KIEKLPETLCELYNLERLN-VD 198 (510)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~~lp~~~~~l~~L~~L~-L~ 198 (510)
..+++|+.|+|+ ++.+..+|..++++.+|+.|++++|. ..+..|..++.+++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls-------~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELS-------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCC-------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCC-------hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 456777777777 77777777777777777777776553 2445566777788888877 55
Q ss_pred CCCccccCch------hhhc--cccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCc
Q 010462 199 HCKNLRELPR------GIGK--LRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDC 270 (510)
Q Consensus 199 ~~~~~~~lp~------~~~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l 270 (510)
.+. +..++. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++..+.... .+.
T Consensus 419 ~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~----lp~----------- 480 (567)
T 1dce_A 419 AAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRA----LPP----------- 480 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCC----CCG-----------
T ss_pred hcc-cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccc----cch-----------
Confidence 443 333332 1221 125778888887 4455665 7777777777766543321 111
Q ss_pred eecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCC
Q 010462 271 RIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNV 350 (510)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 350 (510)
.+..+++|+.|++++|... .++ .+..+++|+.|++++|.+..
T Consensus 481 -----------------~~~~l~~L~~L~Ls~N~l~------------------~lp-~l~~l~~L~~L~Ls~N~l~~-- 522 (567)
T 1dce_A 481 -----------------ALAALRCLEVLQASDNALE------------------NVD-GVANLPRLQELLLCNNRLQQ-- 522 (567)
T ss_dssp -----------------GGGGCTTCCEEECCSSCCC------------------CCG-GGTTCSSCCEEECCSSCCCS--
T ss_pred -----------------hhhcCCCCCEEECCCCCCC------------------CCc-ccCCCCCCcEEECCCCCCCC--
Confidence 2233444555555555311 122 45566677777777776665
Q ss_pred C--chhHHhhhhcccceeccCccCCCcCCCC----CCCCccceee
Q 010462 351 V--PISWFMSLTNLRFLFLFGWRNCEHLPPL----GKLPSLEYLE 389 (510)
Q Consensus 351 ~--p~~~~~~l~~L~~L~L~~~~~~~~l~~~----~~l~~L~~L~ 389 (510)
+ | ..+..+++|+.|++++|......|.. ..+|+|+.|+
T Consensus 523 ~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 5 56666777777777777544333322 1255666554
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.4e-13 Score=117.77 Aligned_cols=129 Identities=22% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|.+ .. ++......++|++|+++ +|.+..+ ..+..+++|++|++++|. +..+|..+
T Consensus 17 ~~~~L~~L~l~~n~l---~~-i~~~~~~~~~L~~L~Ls-------~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI---PV-IENLGATLDQFDAIDFS-------DNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCC---CS-CCCGGGGTTCCSEEECC-------SSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCCC---ch-hHHhhhcCCCCCEEECC-------CCCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 778888888888873 33 34423333488888888 8887777 567888888888888888 77777544
Q ss_pred -hcccccceeccCCCCccccCch--hhhccccCceeecCCCccccccccc----ccCcccccccCcEEEeC
Q 010462 187 -CELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLPAG----IGELIRLRSVRKFVVGG 250 (510)
Q Consensus 187 -~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~ 250 (510)
..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 788888888888887 677776 678888888888888843 455653 67777888887766543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=4.2e-13 Score=119.20 Aligned_cols=130 Identities=25% Similarity=0.346 Sum_probs=111.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++.. .|..+++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-------GNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-------SSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-------CCcCCccCHh
Confidence 7899999999988765542 23489999999999998 566578889999999999999 9999999765
Q ss_pred -ccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcc
Q 010462 162 -IEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 162 -i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 226 (510)
+..+++|++|++++|. +..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5789999999999999 6665 6679999999999999999 666654 588899999999999954
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.3e-13 Score=132.44 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEecccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQGLYTNFIKKIP-TNIE 163 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~ 163 (510)
.+.+.++.+..+|..+. +.++.|++++|. +..+.+..|. .+++|++|+|+ +|.+..++ ..|.
T Consensus 22 ~l~c~~~~l~~iP~~~~------~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~ 85 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP------SYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLS-------HNHLNFISSEAFV 85 (361)
T ss_dssp EEECCSSCCSSCCSSCC------TTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred EEEeCCCCcCccCccCC------CCCCEEECCCCC---CCccChhhhhhcccccCEEECC-------CCcCCccChhhcc
Confidence 44555555555554432 346667777766 4443444454 66677777776 66666664 4566
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccc----cCcc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGI----GELI 238 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l----~~l~ 238 (510)
++++|++|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|++++| .+..+|..+ ..++
T Consensus 86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLP 163 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CT
T ss_pred CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCC
Confidence 66777777777766 555543 4566677777777776633333555666777777777766 334444432 3455
Q ss_pred cccccCcEEEeC
Q 010462 239 RLRSVRKFVVGG 250 (510)
Q Consensus 239 ~L~~L~l~~~~~ 250 (510)
+|+.|++..+..
T Consensus 164 ~L~~L~L~~N~l 175 (361)
T 2xot_A 164 KLMLLDLSSNKL 175 (361)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 666665554433
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2e-13 Score=113.33 Aligned_cols=124 Identities=27% Similarity=0.293 Sum_probs=105.8
Q ss_pred CceeEEEEEeecCC--CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGA--SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
..+++|.+.++.+. ..+..+. .+++|+.|++++|. +..+ ..+..+++|++|+++ +|.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD----EFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELS-------DNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT----TCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECC-------SSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHHHh----hcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECC-------CCcccchH
Confidence 77999999999887 4555444 89999999999998 4442 448899999999999 999888 7
Q ss_pred cccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCch----hhhccccCceeecCC
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNEG 223 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~~ 223 (510)
|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 8878889999999999999 78765 779999999999999998 666665 688999999999863
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.3e-13 Score=144.31 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=82.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCc-cccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSW-SNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++++.+..+.+...+.... ....|+.+.+....... .-...+..|..++.|++|+|+ +|.+..+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls-------~n~l~~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS-------NLQIFNISA 241 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECT-------TSCCSCCCG
T ss_pred CccceEEeeCCCCCcchhhHh----hcCccCcccccCccccccceecChhhhccCCCCcEEECC-------CCCCCCCCh
Confidence 557777777766654333332 33333333332211000 001245667777778888887 777777777
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
.+.++.+|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..++.+++|++|+|++| .+..+|..++.+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 77777788888888877 66777777778888888888877 5577777777888888888777 445777777777777
Q ss_pred cccCcEEEeCc
Q 010462 241 RSVRKFVVGGG 251 (510)
Q Consensus 241 ~~L~l~~~~~~ 251 (510)
+.|++..+...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 77777666554
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.7e-13 Score=118.35 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=111.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.|.+.++.+...+.. ..+..+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..++ .
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLT-------SNRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECC-------CCccCccCHh
Confidence 6788999999988765321 113489999999999998 556567679999999999999 99998885 4
Q ss_pred cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 227 (510)
.+..+++|++|++++|. +..+ |..+..+++|++|+|++|......|..+..+++|++|++++|...
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 58899999999999999 6665 778999999999999999944444788999999999999999653
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=4.3e-13 Score=128.91 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=120.5
Q ss_pred CceeEEEEEeecCCCcccccccccc-CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVK-GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|++.++.+...+... +. .+++|+.|++++|. +..+.+..|..+++|++|+|+ +|.+..++.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~---~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEW---TPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS-------SNHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTS---SSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECT
T ss_pred CCCCEEECCCCCCCccChhh---hhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC-------CCcCCcCCH
Confidence 67899999999887655433 33 78999999999998 566566779999999999999 999998854
Q ss_pred -cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhh----hccccCceeecCCCccccccc-cc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGI----GKLRKLMYLHNEGTDSLRYLP-AG 233 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~p-~~ 233 (510)
.|..+.+|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|..+ ..+++|++|++++|.. ..+| ..
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~ 182 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTD 182 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHH
T ss_pred HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHH
Confidence 68889999999999999 6665 6789999999999999998 88888775 5799999999999954 4555 34
Q ss_pred ccCcccc--cccCcEEE
Q 010462 234 IGELIRL--RSVRKFVV 248 (510)
Q Consensus 234 l~~l~~L--~~L~l~~~ 248 (510)
+..++.+ +.|++..+
T Consensus 183 ~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHSCHHHHTTEECCSS
T ss_pred hhhccHhhcceEEecCC
Confidence 5555543 55555443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=9.2e-14 Score=145.38 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=104.7
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
+..++.|+.|+|++|. +.. +|..+..+++|++|+|+ +|.+..+|..|+++++|++|+|++|. +..+|.
T Consensus 220 ~~~l~~L~~L~Ls~n~---l~~-l~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ---IFN-ISANIFKYDFLTRLYLN-------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp --CCCCCCEEECTTSC---CSC-CCGGGGGCCSCSCCBCT-------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hccCCCCcEEECCCCC---CCC-CChhhcCCCCCCEEEee-------CCcCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 4489999999999998 444 45446699999999999 99999999999999999999999999 889999
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccC
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
.+++|++|++|+|++|. +..+|..|+.+++|++|+|++|.....+|..+..
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999999998 7899999999999999999999776666665544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7.1e-13 Score=113.36 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=107.6
Q ss_pred CceeEEEEEeecCCCccccccccccCC-CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGL-RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|.+.++.+..++. +. .+ ++|+.|++++|.+ ..+ ..|..+++|++|+++ +|.+..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~----~~~~~L~~L~Ls~N~l---~~~--~~l~~l~~L~~L~Ls-------~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNEI---RKL--DGFPLLRRLKTLLVN-------NNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSCC---CEE--CCCCCCSSCCEEECC-------SSCCCEECS
T ss_pred CCceEEEeeCCCCchhHH-hh----hcCCCCCEEECCCCCC---Ccc--cccccCCCCCEEECC-------CCcccccCc
Confidence 779999999998886543 32 44 4999999999984 442 348899999999999 999999976
Q ss_pred cc-cccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchh----hhccccCceeecCCCcc
Q 010462 161 NI-EKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRG----IGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 161 ~i-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~ 226 (510)
.+ ..+++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55 889999999999999 888887 78999999999999999 7788875 89999999999998853
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.6e-12 Score=112.74 Aligned_cols=126 Identities=24% Similarity=0.248 Sum_probs=95.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhH-hhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQ-LFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
+.+++.++.+..+|..+. ++++.|++++|. +..+.+. .|..+++|++|+++ +|.+..+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCC------CCCCEEECCCCc---CCccCCccccccCCCCCEEECC-------CCCCCCcCHhHc
Confidence 456677777766666543 388888998887 4443332 47888889999998 8888777 6778
Q ss_pred cccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 227 (510)
.++++|++|++++|. ++.++ ..+.++++|++|++++|......|..+..+++|++|++++|...
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888899999999888 55554 45788888999999988855556777888888999998888543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.5e-12 Score=110.59 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=91.5
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~ 164 (510)
.+.+.++.+..+|..+. ++|+.|++++|. +.. +|..|..+++|++|+++ +|.+..++ ..|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~------~~l~~L~L~~n~---i~~-ip~~~~~l~~L~~L~Ls-------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP------RDVTELYLDGNQ---FTL-VPKELSNYKHLTLIDLS-------NNRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCCC------TTCCEEECCSSC---CCS-CCGGGGGCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCCC------CCCCEEECCCCc---Cch-hHHHhhcccCCCEEECC-------CCcCCEeCHhHccC
Confidence 45566666666665442 578888888887 444 45668888888888888 88888874 56788
Q ss_pred cCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcc
Q 010462 165 LLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 226 (510)
+++|++|++++|. +..+| ..+..+++|++|+|++|. +..+|.. +..+++|++|++++|..
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888888888 66655 468888888888888888 6666654 67788888888888754
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=2.8e-12 Score=129.99 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=111.8
Q ss_pred ccCCCCccEEE-eccCCcCccccc--hhHhhhc--CCceeEEEeccccccccccccccccccccccCccceEeccCCCCc
Q 010462 105 VKGLRGLRSLL-VESGEYSWSNEI--LPQLFDK--LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 105 ~~~~~~L~~L~-l~~~~~~~~~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
+..+++|+.|+ +..|.+...... ....+.. ...|++|+++ +|.+..+|. ++.+++|++|++++|. +
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls-------~n~l~~lp~-~~~l~~L~~L~Ls~N~-l 475 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-------HKDLTVLCH-LEQLLLVTHLDLSHNR-L 475 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECT-------TSCCSSCCC-GGGGTTCCEEECCSSC-C
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEec-------CCCCCCCcC-ccccccCcEeecCccc-c
Confidence 44778888887 555542111100 0000111 1358999999 888888987 8999999999999998 7
Q ss_pred cccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc-cccccCcccccccCcEEEeCccCCccCc
Q 010462 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL-PAGIGELIRLRSVRKFVVGGGYDRACSL 258 (510)
Q Consensus 180 ~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 258 (510)
+.+|..++.+++|++|+|++|. +..+| .++++++|++|++++|...... |..++.+++|+.|++.++..........
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred cccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 8999999999999999999998 77788 7999999999999999554443 8889999999999988877664222222
Q ss_pred ccccccccCCCce
Q 010462 259 GSLKKLNLLRDCR 271 (510)
Q Consensus 259 ~~l~~l~~L~~l~ 271 (510)
..+..+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 2233456666553
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1.2e-11 Score=117.31 Aligned_cols=290 Identities=11% Similarity=0.091 Sum_probs=161.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhc-CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDK-LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+.+++.|.+.++- ....-..+.. +++|++|||+ ++.+......-+.++.++++.+..+. +| .
T Consensus 23 ~~~~l~~L~l~g~i----~~~~~~~l~~~l~~L~~LdLs-------~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKL----NAEDFRHLRDEFPSLKVLDIS-------NAEIKMYSGKAGTYPNGKFYIYMANF----VPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEE----CHHHHHHHHHSCTTCCEEEEE-------EEEECCEEESSSSSGGGCCEEECTTE----ECTT
T ss_pred hhCceeEEEEeccc----cHHHHHHHHHhhccCeEEecC-------cceeEEecCccccccccccccccccc----cCHH
Confidence 35677888887752 1111122444 7888899998 77776221111223334555555442 33 3
Q ss_pred hhhc--------ccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCc
Q 010462 185 TLCE--------LYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRA 255 (510)
Q Consensus 185 ~~~~--------l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 255 (510)
.|.+ +++|+.|++.+ . +..++. .|..+++|+.+++.+|......+..+..+.++..+......
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~------ 159 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD------ 159 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH------
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh------
Confidence 4556 88888888887 4 555554 47788888888888874433333445444444333221100
Q ss_pred cCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCC-eEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCC
Q 010462 256 CSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLL-KLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPP 334 (510)
Q Consensus 256 ~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 334 (510)
.......+.. ..+..+..|+ .+.+.... .........-..+.
T Consensus 160 ----~~~~~~~i~~-----------------~~f~~~~~L~~~i~~~~~~----------------~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 160 ----AYRFKNRWEH-----------------FAFIEGEPLETTIQVGAMG----------------KLEDEIMKAGLQPR 202 (329)
T ss_dssp ----HHHTSTTTTT-----------------SCEEESCCCEEEEEECTTC----------------CHHHHHHHTTCCGG
T ss_pred ----hhhccccccc-----------------cccccccccceeEEecCCC----------------cHHHHHhhcccCcc
Confidence 0000000000 1122223333 22222111 01222222233455
Q ss_pred CccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 335 NLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 335 ~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
++..+.+.+.-...+ +. .....+++|+.|+|.+|. +..++. +..+++|+.|+|.++ ++.++...+
T Consensus 203 ~~~~l~~~~~l~~~~-~~-~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-------- 269 (329)
T 3sb4_A 203 DINFLTIEGKLDNAD-FK-LIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-------- 269 (329)
T ss_dssp GCSEEEEEECCCHHH-HH-HHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT--------
T ss_pred ccceEEEeeeecHHH-HH-HHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHh--------
Confidence 677777776533220 11 122257889999998874 455554 888889999999875 777766543
Q ss_pred Cccccccccc-cccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEE
Q 010462 413 SSVIAFPKLK-HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHI 480 (510)
Q Consensus 413 ~~~~~~~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 480 (510)
.++++|+ .+.+.+ .++.+ .+.+|..+++|+.|++.++ .++.++. .+.++++|+.|+.
T Consensus 270 ---~~~~~L~~~l~l~~--~l~~I-----~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 ---SNCGRLAGTLELPA--SVTAI-----EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTCTTCCEEEEECT--TCCEE-----CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred ---hCChhccEEEEEcc--cceEE-----chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 3677888 887766 34433 3455678899999999777 4566655 6778889988863
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=2.1e-12 Score=111.98 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=100.8
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc--ccccCccceEeccCCCCcccc-chhhhc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN--IEKLLHLKYLSLFGQKKIEKL-PETLCE 188 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~l-p~~~~~ 188 (510)
++++++++. +.. +|..+. .+|++|+++ ++.+..++.. +..+++|++|++++|. ++.+ |..+.+
T Consensus 11 ~~l~~s~~~---l~~-ip~~~~--~~l~~L~l~-------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRG---LKE-IPRDIP--LHTTELLLN-------DNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCC---cCc-CccCCC--CCCCEEECC-------CCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 688999887 444 343232 389999999 9999888653 8899999999999999 5555 778999
Q ss_pred ccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCc
Q 010462 189 LYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.|++..+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999944444555889999999999999766666888888999999887766543
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=8.2e-14 Score=121.75 Aligned_cols=110 Identities=23% Similarity=0.231 Sum_probs=80.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +.. +| .+..+++|++|+++ +|.+..+|..+..+++|++|++++|. +..+| .+
T Consensus 46 ~l~~L~~L~ls~n~---l~~-l~-~~~~l~~L~~L~l~-------~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 46 TLKACKHLALSTNN---IEK-IS-SLSGMENLRILSLG-------RNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HTTTCSEEECSEEE---ESC-CC-CHHHHTTCCEEEEE-------EEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cCCCCCEEECCCCC---Ccc-cc-ccccCCCCCEEECC-------CCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 77888888888876 333 44 47777888888888 77777777777777788888888887 67776 47
Q ss_pred hcccccceeccCCCCccccCch--hhhccccCceeecCCCccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLP 231 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p 231 (510)
..+++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 778888888888877 555543 57778888888888875433333
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=1.3e-11 Score=105.63 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=96.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-ccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~ 163 (510)
+.+.+.++.+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+|. .+.
T Consensus 10 ~~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFD 73 (177)
T ss_dssp TEEECCSSCCSSCCTTC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTT
T ss_pred CEEEecCCCCccCCCCC------CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECC-------CCcceEeChhHcc
Confidence 34566666666555433 4689999999987 445456667889999999999 888888865 467
Q ss_pred ccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 227 (510)
.+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 89999999999998 6776654 6789999999999998 6677765 467899999999998543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=7.6e-12 Score=108.47 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=97.1
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc-hhhhccc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP-ETLCELY 190 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 190 (510)
++++++++. +.. +|..+ .++|++|+++ ++.+..+|..+.++++|++|++++|. ++.++ ..|.+++
T Consensus 13 ~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG---LKV-LPKGI--PRDVTELYLD-------GNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCCEEECC-------SSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCC---CCc-CCCCC--CCCCCEEECC-------CCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 567888887 444 33323 2589999999 99999999999999999999999999 66665 5689999
Q ss_pred ccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCcccccccCcEEEeC
Q 010462 191 NLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~ 250 (510)
+|++|+|++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+..
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence 99999999999 55554 5688999999999999954 45554 577888888887765543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=3.2e-14 Score=124.39 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP 207 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp 207 (510)
+|..|..+++|++|+++ +|.+..+| .+..+++|++|++++|. ++.+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-------~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-------EEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-------CCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 45578999999999999 88888888 88889999999999998 88899888888999999999998 67777
Q ss_pred hhhhccccCceeecCCCccccccc--ccccCcccccccCcEEEeC
Q 010462 208 RGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 208 ~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~ 250 (510)
.+..+++|++|++++|. +..++ ..+..+++|+.|++..+..
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 58899999999999984 34433 3567777788777765543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.8e-11 Score=116.00 Aligned_cols=266 Identities=11% Similarity=0.044 Sum_probs=144.0
Q ss_pred CCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGK 212 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 212 (510)
+.+++.|.++ +.--..-...+.. +++|++|+|++|. +......-+.++.++.+.+..+. +| ..|.+
T Consensus 24 ~~~l~~L~l~-------g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLT-------GKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANF----VPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEE-------EEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTE----ECTTTTEE
T ss_pred hCceeEEEEe-------ccccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccc----cCHHHhcc
Confidence 5577888887 4321110122333 7889999999988 55221111222334444444442 33 23556
Q ss_pred --------cccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhh
Q 010462 213 --------LRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGE 283 (510)
Q Consensus 213 --------l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~ 283 (510)
+++|+.|++.+ .+..++ ..+..+++|+.+.+..+........
T Consensus 92 ~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~--------------------------- 142 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE--------------------------- 142 (329)
T ss_dssp EETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT---------------------------
T ss_pred cccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchh---------------------------
Confidence 89999999987 234444 4577888888887765433221111
Q ss_pred hhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCcc-EEEEeecCCccCCCchhHHh---hh
Q 010462 284 ARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLK-KLRIDEYRGRRNVVPISWFM---SL 359 (510)
Q Consensus 284 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~p~~~~~---~l 359 (510)
.|..+.++..+...... .... ........+..+..|+ .+.+..... ++...+. ..
T Consensus 143 ----aF~~~~~l~~l~~~~~~------~~~~-------~~~i~~~~f~~~~~L~~~i~~~~~~~----l~~~~~~~~~~~ 201 (329)
T 3sb4_A 143 ----ALADSVTAIFIPLGSSD------AYRF-------KNRWEHFAFIEGEPLETTIQVGAMGK----LEDEIMKAGLQP 201 (329)
T ss_dssp ----SSCTTTCEEEECTTCTH------HHHT-------STTTTTSCEEESCCCEEEEEECTTCC----HHHHHHHTTCCG
T ss_pred ----hhcCCCceEEecCcchh------hhhc-------cccccccccccccccceeEEecCCCc----HHHHHhhcccCc
Confidence 11111222211111100 0000 0000011122344555 444443222 3312222 35
Q ss_pred hcccceeccCccCCCcCCCC-CCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccc
Q 010462 360 TNLRFLFLFGWRNCEHLPPL-GKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFE 438 (510)
Q Consensus 360 ~~L~~L~L~~~~~~~~l~~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 438 (510)
.++..+.+.+.-.......+ ..+++|+.|+|.++. ++.++...+ .++++|++|++.+. ++.+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-----------~~~~~L~~l~l~~n--i~~I--- 264 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-----------AQKKYLLKIKLPHN--LKTI--- 264 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-----------TTCTTCCEEECCTT--CCEE---
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-----------hCCCCCCEEECCcc--ccee---
Confidence 66777777654211111111 237899999999876 778876544 37889999998773 4443
Q ss_pred cccccccccCcccc-eeeeccCcccccCC-cccCCCCCCcEEEEcCC
Q 010462 439 TAIKREIIIMPRLS-SLTIWSCRKLKALP-DHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 439 ~~~~~~~~~l~~L~-~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 483 (510)
.+.+|..+++|+ .+.+.+ .++.++ ..+..+++|+.|++.++
T Consensus 265 --~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 265 --GQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp --CTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred --hHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 345567899999 999987 466665 46788999999999765
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=1.3e-10 Score=99.26 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=97.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccccCccceEeccCCCCccccchh-hhc
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKLPET-LCE 188 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-~~~ 188 (510)
.+.+++.++. +.. +|.. ..++|++|+++ ++.+..+|. .+..+++|++|++++|. ++.+|.. +..
T Consensus 9 ~~~l~~~~~~---l~~-~p~~--~~~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKG---LTS-VPTG--IPSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSC---CSS-CCTT--CCTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCC---Ccc-CCCC--CCCCCcEEEeC-------CCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 4678888876 444 3322 23689999999 888888865 46889999999999998 7777654 689
Q ss_pred ccccceeccCCCCccccCchh-hhccccCceeecCCCccccccccc-ccCcccccccCcEEEeCc
Q 010462 189 LYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAG-IGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~ 251 (510)
+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|.. +..+++|+.|++..+...
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence 9999999999998 6666654 68899999999999954 556654 577888998888766443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=7.3e-11 Score=100.30 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=64.7
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh-hhcc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET-LCEL 189 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 189 (510)
+.++++++. +.. +|..+ .++|++|+++ +|.+..+ |..|.++++|++|+|++|. +..+|.. +.++
T Consensus 15 ~~l~~~~n~---l~~-iP~~~--~~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIR---LAS-VPAGI--PTDKQRLWLN-------NNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCC---CCc-cCCCc--CCCCcEEEeC-------CCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 556666665 333 33322 2667777777 7777666 4566677777777777776 6666654 4667
Q ss_pred cccceeccCCCCccccCchh-hhccccCceeecCCCc
Q 010462 190 YNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 225 (510)
++|++|+|++|. +..+|.. +..+++|++|++++|.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 777777777776 5566654 6677777777777773
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=1.1e-10 Score=99.09 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=91.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc-cc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-IE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~-i~ 163 (510)
+.+.+.++.+..+|..+ .++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..+|.. +.
T Consensus 15 ~~l~~~~n~l~~iP~~~------~~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI------PTDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFN-------SNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred cEEEeCCCCCCccCCCc------CCCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECC-------CCCCCccChhHhC
Confidence 46777777777677654 3899999999998 666568889999999999999 9999999765 57
Q ss_pred ccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGK 212 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~ 212 (510)
++++|++|++++|. ++.+|.. +..+++|++|++++|. +...|..+..
T Consensus 79 ~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~ 126 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMY 126 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred CcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC-cccccccHHH
Confidence 89999999999999 8888875 8899999999999998 6655554443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=2.7e-10 Score=96.40 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=61.2
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh-hhcc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET-LCEL 189 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 189 (510)
+.+++++|. +.. +|..+ .++|++|+++ +|.+..+ |..|.++++|++|++++|. +..+|.. +.++
T Consensus 12 ~~l~~s~n~---l~~-ip~~~--~~~l~~L~L~-------~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKS---LAS-VPTGI--PTTTQVLYLY-------DNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKL 77 (170)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEeCCCC---cCc-cCccC--CCCCcEEEcC-------CCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCC
Confidence 556666665 333 23222 2566777777 6666666 4556667777777777776 5555543 4667
Q ss_pred cccceeccCCCCccccCch-hhhccccCceeecCCCc
Q 010462 190 YNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 225 (510)
++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 78 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777777776 555554 36667777777777764
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=2.4e-09 Score=104.02 Aligned_cols=305 Identities=15% Similarity=0.086 Sum_probs=160.8
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.+|.+|+.+.+..+ +..+-..+|..|.+|+.+++. ++ +..++ ..|.++..|+.+.+..+ +..+
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp-------~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP-------DS-VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC-------TT-CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC-------CC-ceEccchhhcccccchhhcccCc--eeee
Confidence 3458899999999754 555556779999999999996 43 55553 45777888888777654 3333
Q ss_pred c-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCccc
Q 010462 183 P-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGS 260 (510)
Q Consensus 183 p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 260 (510)
+ .++.++..++.........+ -...+..+++|+.+.+.++ . ..++ ..+..+.+|+.+.+... .. ......
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~-~~I~~~~F~~c~~L~~i~l~~~-~~---~I~~~~ 203 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS-M-ETLHNGLFSGCGKLKSIKLPRN-LK---IIRDYC 203 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCBCCCCTT-CC---EECTTT
T ss_pred cceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc-c-ceeccccccCCCCceEEEcCCC-ce---EeCchh
Confidence 3 33444444443333332211 1234667777777777654 1 2232 34556666776654321 00 001112
Q ss_pred ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEE
Q 010462 261 LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLR 340 (510)
Q Consensus 261 l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 340 (510)
+..+..|+.+.+..- .. ...........|+.+.+.... .......+..+..++.+.
T Consensus 204 F~~~~~L~~i~~~~~--~~----~i~~~~~~~~~l~~i~ip~~~------------------~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 204 FAECILLENMEFPNS--LY----YLGDFALSKTGVKNIIIPDSF------------------TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTTCTTCCBCCCCTT--CC----EECTTTTTTCCCCEEEECTTC------------------CEECSSTTTTCSSCCEEE
T ss_pred hccccccceeecCCC--ce----EeehhhcccCCCceEEECCCc------------------eecccccccccccceeEE
Confidence 223333333332210 00 000112233566666654321 001112344566777777
Q ss_pred EeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc
Q 010462 341 IDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF 418 (510)
Q Consensus 341 l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (510)
+..+... ++...+..+..++.+...... ++. +..+.+|+.+.+... ++.++... +..+
T Consensus 260 ~~~~~~~---i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~--i~~I~~~a-----------F~~c 319 (394)
T 4fs7_A 260 IQNNKLR---IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS--VKFIGEEA-----------FESC 319 (394)
T ss_dssp ECCTTCE---ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT--CCEECTTT-----------TTTC
T ss_pred cCCCcce---eeccccccccccceeccCcee----eccccccccccccccccccc--cceechhh-----------hcCC
Confidence 7654322 222445566666666554432 222 556777777777542 55554433 2356
Q ss_pred cccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCC
Q 010462 419 PKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRC 483 (510)
Q Consensus 419 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 483 (510)
.+|+.+.+.+ .++.+ ...+|..+.+|+.+.+..+ ++.+.. .+..+++|+.+++..+
T Consensus 320 ~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 6777776643 13222 2334556777777777554 445543 4566778888877543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=5.3e-10 Score=94.64 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=86.3
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchh-hhccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRG-IGKLR 214 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~ 214 (510)
..++++++ ++.+..+|..+. .+|++|++++|. +..+ |..+.++++|++|+|++|. +..+|.. +..++
T Consensus 10 ~~~~l~~s-------~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCS-------GKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECT-------TSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCEEEeC-------CCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 35789999 999999998774 899999999999 6666 6679999999999999999 6677765 58999
Q ss_pred cCceeecCCCcccccccc-cccCcccccccCcEEEeCc
Q 010462 215 KLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~ 251 (510)
+|++|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 79 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999999954 55554 5889999999988876543
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=2.7e-09 Score=103.31 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+..++.+.+.++ +..+-..+|..+ +|+.+.+. ++ +..++ ..|.+ .+|+.+.+.. . ++.++ .
T Consensus 111 ~~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~-------~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~ 174 (401)
T 4fdw_A 111 ILKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLN-------EG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKED 174 (401)
T ss_dssp ECSSCSEEECCTT----CCEECTTTTTTC-CCSEEECC-------TT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSS
T ss_pred ecCCccEEEECCc----cCEehHhhcccC-CccEEEeC-------CC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHH
Confidence 4577777777765 555556667775 68888886 44 66674 45555 4788888876 3 66665 4
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRK 245 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l 245 (510)
+|.++++|+.+++.+|. +..+|.......+|+.+.+..+ +..++ ..+..+.+|+.+.+
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 68888999999998877 7777776666788888888754 33333 34666666766654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=1.4e-08 Score=98.26 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=145.8
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.++ +|+.+.+..+ +..+-..+|..+ .|+.+.+. + .+..+ +..|.++.+|+.+++..|. +..+
T Consensus 131 aF~~~-~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp-------~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I 195 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFP-------S-TLEQLKEDIFYYCYNLKKADLSKTK-ITKL 195 (401)
T ss_dssp TTTTC-CCSEEECCTT----CCEECTTTTTTC-CCCEEECC-------T-TCCEECSSTTTTCTTCCEEECTTSC-CSEE
T ss_pred hcccC-CccEEEeCCC----ccEECHHhcCCC-CceEEEeC-------C-CccEehHHHhhCcccCCeeecCCCc-ceEe
Confidence 34465 7999999876 555566678885 69999997 5 56777 4678889999999999988 8888
Q ss_pred chhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCcccccccCcEEEeCccCCccCccc
Q 010462 183 PETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGGGYDRACSLGS 260 (510)
Q Consensus 183 p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 260 (510)
|.......+|+.+.+..+ +..++ ..|.++++|+.+++..+ +..++. .+.. .+|+.+.+
T Consensus 196 ~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l--------------- 255 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL--------------- 255 (401)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE---------------
T ss_pred chhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe---------------
Confidence 876555799999999854 55554 45778999999999865 233332 2332 34444433
Q ss_pred ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEE
Q 010462 261 LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLR 340 (510)
Q Consensus 261 l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 340 (510)
.. . ........|.++++|+.+.+..+...... ........+..+++|+.+.
T Consensus 256 ------------p~--~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------------~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 256 ------------PN--G---VTNIASRAFYYCPELAEVTTYGSTFNDDP------------EAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp ------------ET--T---CCEECTTTTTTCTTCCEEEEESSCCCCCT------------TCEECTTTTTTCTTCCEEC
T ss_pred ------------CC--C---ccEEChhHhhCCCCCCEEEeCCccccCCc------------ccEECHHHhhCCccCCeEE
Confidence 11 0 00111235666777888877765411000 0011234566778888888
Q ss_pred EeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCcc
Q 010462 341 IDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 341 l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~ 394 (510)
+.+ .... ++...|.+|++|+.+.|..+ +..++. +.++ +|+.+.+.++.
T Consensus 307 l~~-~i~~--I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 307 IPE-SIRI--LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCT-TCCE--ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred eCC-ceEE--EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 874 3333 44466778888998888655 444443 7777 89999988775
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=1.4e-08 Score=96.82 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred hhcCCceeEEEeccccccccc-ccccccc-ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch
Q 010462 132 FDKLTCLRALKLEVREQGLYT-NFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR 208 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~ 208 (510)
+..+.+|++|+|+ + |.+..+| ..|.++.+|++|+|++|. +..+ |..|.+|++|+.|+|++|. +..+|.
T Consensus 27 l~~~~~L~~L~l~-------~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIE-------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp SCSCSCCSEEECC-------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCCCCCeeEEEcc-------CCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 4445555555554 4 4455443 344555555555555555 3333 2234555555555555554 444444
Q ss_pred hhhccccCceeecCCC
Q 010462 209 GIGKLRKLMYLHNEGT 224 (510)
Q Consensus 209 ~~~~l~~L~~L~l~~~ 224 (510)
.+.....|+.|++.+|
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 3333223555555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=2.9e-08 Score=94.59 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=82.2
Q ss_pred EEEEee-cCCCccccccccccCCCCccEEEecc-CCcCccccchhHhhhcCCceeEEEecccccccccccccccc-cccc
Q 010462 87 LMLTLH-RGASVPIPIWDNVKGLRGLRSLLVES-GEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIE 163 (510)
Q Consensus 87 L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~ 163 (510)
+.+.++ .+..+|. +. .+++|+.|+|++ |. +..+.+..|..+++|++|+|+ +|.+..+| ..|.
T Consensus 13 v~~~~~n~l~~ip~-l~----~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LP----GAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAFH 77 (347)
T ss_dssp EECCSSCCCTTTTT-SC----SCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGGG
T ss_pred EEcCCCCCCCccCC-CC----CCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECC-------CCccceeCHHHhc
Confidence 455555 5666666 65 899999999996 87 666567789999999999999 99998884 5789
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKN 202 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 202 (510)
++++|++|+|++|. +..+|..+.....|+.|+|.+|..
T Consensus 78 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 78 FTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 99999999999999 888887655544599999999983
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=2.8e-09 Score=102.09 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCCccEEEeccCCcCccc-cchhHhhh-cCCceeEEEeccccccccccccccc-cccc-cccCccceEeccCCCCccccc
Q 010462 108 LRGLRSLLVESGEYSWSN-EILPQLFD-KLTCLRALKLEVREQGLYTNFIKKI-PTNI-EKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i-~~l~~L~~L~l~~~~~~~~lp 183 (510)
.++|+.|++++|.+.... ..+...+. ..++|++|+|+ +|.+... ...+ ..+.+|++|+|++|. ++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-------SCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-------TCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-------CCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 466778888887632111 01222222 23678888887 6665432 1222 235677888888887 54422
Q ss_pred -hhh-----hcccccceeccCCCCccc-----cCchhhhccccCceeecCCCc
Q 010462 184 -ETL-----CELYNLERLNVDHCKNLR-----ELPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 184 -~~~-----~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~ 225 (510)
..+ ...++|++|+|++|. ++ .++..+..+++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 222 235678888888877 33 244555667778888888774
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=4.2e-07 Score=88.09 Aligned_cols=289 Identities=11% Similarity=0.044 Sum_probs=164.6
Q ss_pred ccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCc
Q 010462 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKN 202 (510)
Q Consensus 125 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~ 202 (510)
..+-..+|..|.+|+.+.+. .+ +..+ ..+|.++.+|+.+++..+ ++.++. ++.++.+|+.+.+..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp-------~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-- 127 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIP-------ST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-- 127 (394)
T ss_dssp EEECTTTTTTCTTEEEEECC-------TT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--
T ss_pred eEhHHHHhhCCCCceEEEeC-------CC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--
Confidence 34445669999999999996 43 6677 456888999999999765 566654 5778889988877654
Q ss_pred cccCc-hhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCCh
Q 010462 203 LRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA 281 (510)
Q Consensus 203 ~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~ 281 (510)
+..+. ..+..+..+......... ..-...+..+++|+.+.+.... . ......+..+.+|+.+.+.. .+
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~---~I~~~~F~~c~~L~~i~l~~--~~--- 196 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-E---TLHNGLFSGCGKLKSIKLPR--NL--- 196 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-C---EECTTTTTTCTTCCBCCCCT--TC---
T ss_pred eeeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-c---eeccccccCCCCceEEEcCC--Cc---
Confidence 33332 334444433333332221 1112346677777777653111 0 11122344445555555432 11
Q ss_pred hhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhc
Q 010462 282 GEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTN 361 (510)
Q Consensus 282 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~ 361 (510)
.......+.++..|+.+.+..+. ..+........+|+.+.+.... .. ++...+..+.+
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~-------------------~~i~~~~~~~~~l~~i~ip~~~-~~--i~~~~f~~~~~ 254 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSL-------------------YYLGDFALSKTGVKNIIIPDSF-TE--LGKSVFYGCTD 254 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTC-------------------CEECTTTTTTCCCCEEEECTTC-CE--ECSSTTTTCSS
T ss_pred eEeCchhhccccccceeecCCCc-------------------eEeehhhcccCCCceEEECCCc-ee--ccccccccccc
Confidence 11122345566677766554332 1111223344678888775432 11 23245567788
Q ss_pred ccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccc
Q 010462 362 LRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAI 441 (510)
Q Consensus 362 L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 441 (510)
|+.+.+..+...-....+..++.++.+...... ++... +..+.+|+.+.+.+ .++.+ .
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~-----------F~~~~~L~~i~l~~--~i~~I-----~ 312 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKT-----------FYGCSSLTEVKLLD--SVKFI-----G 312 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTT-----------TTTCTTCCEEEECT--TCCEE-----C
T ss_pred ceeEEcCCCcceeeccccccccccceeccCcee----ecccc-----------cccccccccccccc--cccee-----c
Confidence 888888765221122236677778777765422 33222 23567788777644 23332 2
Q ss_pred ccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcC
Q 010462 442 KREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRR 482 (510)
Q Consensus 442 ~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 482 (510)
..+|..+.+|+.++|..+ ++.+.. .+.++++|+.+.+..
T Consensus 313 ~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred hhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 344567899999999654 556644 566788999988854
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=6.1e-09 Score=99.78 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=106.4
Q ss_pred CceeEEEEEeecCCCc-ccccccccc-CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVK-GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI- 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l- 158 (510)
..++.|++.++.+... ...+...+. ..++|+.|++++|.+. ..........+++|+.|+|+ +|.+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls-------~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQ-------LNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECC-------SSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcC-------CCCCCHHH
Confidence 6688999988877641 122221222 3379999999999732 12133334566789999999 8876543
Q ss_pred ----cccc-cccCccceEeccCCCCccc-----cchhhhcccccceeccCCCCcccc-----CchhhhccccCceeecCC
Q 010462 159 ----PTNI-EKLLHLKYLSLFGQKKIEK-----LPETLCELYNLERLNVDHCKNLRE-----LPRGIGKLRKLMYLHNEG 223 (510)
Q Consensus 159 ----p~~i-~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~ 223 (510)
...+ ...++|++|+|++|. ++. ++..+..+++|++|+|++|. +.. ++..+...++|+.|++++
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 2222 246789999999998 654 55566788999999999998 432 455677788999999999
Q ss_pred Ccccc----cccccccCcccccccCcEEEeCc
Q 010462 224 TDSLR----YLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 224 ~~~~~----~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
|.... .++..+...++|++|++..|.+.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 95432 23333445566777766655443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=5.9e-06 Score=80.00 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=73.0
Q ss_pred ccCCC-CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc---cccc-cccccccCccceEeccCCCCc
Q 010462 105 VKGLR-GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF---IKKI-PTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 105 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~l-p~~i~~l~~L~~L~l~~~~~~ 179 (510)
|.+++ .|+.+.+..+ +..+-..+|..|.+|+.+.+. .+. +..+ ...|..+.+|+.+.+..+ +
T Consensus 59 F~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~ 125 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-------DNKPSCVKKIGRQAFMFCSELTDIPILDS--V 125 (394)
T ss_dssp TTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-------GGCCCCCCEECTTTTTTCTTCCBCGGGTT--C
T ss_pred ccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-------CCCCCeeeEechhhchhcccceeeccCCc--c
Confidence 34674 5899988765 555566779999999999987 543 5566 356777888888887665 4
Q ss_pred cccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCC
Q 010462 180 EKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 224 (510)
+.++. .+..+.+|+.+.+..+. ..++ ..+..+.+|+.+.+..+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT
T ss_pred ceehhhhhhhhccccccccccee--eeecccceecccccccccccce
Confidence 55543 56788889888886542 3333 34667778888877654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=8.4e-07 Score=85.98 Aligned_cols=302 Identities=11% Similarity=0.102 Sum_probs=162.2
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.+|.+|+.+.+..+....+..+-..+|..|..|+.+.+. .+ +..++ ..+..+.+|+.+.+..+ +..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-------~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-------DS-VTEIDSEAFHHCEELDTVTIPEG--VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-------TT-CSEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-------Cc-cceehhhhhhhhcccccccccce--eeee
Confidence 45599999999998764333555556679999999988875 33 55563 56778999999999765 4555
Q ss_pred c-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccc
Q 010462 183 P-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSL 261 (510)
Q Consensus 183 p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 261 (510)
+ ..+..+.+|+.+.+..+ +..+........+|+.+.+..+. ...-...+..+.++............. ....
T Consensus 152 ~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~--- 224 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI-DNVL--- 224 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS-SSCE---
T ss_pred cccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccceecccccccccc-ccee---
Confidence 4 45778999999998764 45554444445678888876541 112223344444444332211100000 0000
Q ss_pred cccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEE
Q 010462 262 KKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRI 341 (510)
Q Consensus 262 ~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 341 (510)
-.-.......+. .......+..+.+... ....-...+..+..|+.+.+
T Consensus 225 ~~~~~~~~~~~~--------------~~~~~~~~~~~~ip~~------------------v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 225 YEKSANGDYALI--------------RYPSQREDPAFKIPNG------------------VARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp EEECTTSCEEEE--------------ECCTTCCCSEEECCTT------------------EEEECTTTTTTCSSCCEEEC
T ss_pred eccccccccccc--------------ccccccccceEEcCCc------------------ceEcccceeeecccccEEec
Confidence 000000000000 0001111222221110 00011223455667777776
Q ss_pred eecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccc
Q 010462 342 DEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFP 419 (510)
Q Consensus 342 ~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 419 (510)
.+.... ++...+.++++|+.+.+.. .+..++. +..+.+|+.+.|.. .++.++... +.++.
T Consensus 273 p~~~~~---I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-----------F~~C~ 334 (394)
T 4gt6_A 273 PDSVVS---IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDA-----------FAGCE 334 (394)
T ss_dssp CTTCCE---ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-----------TTTCT
T ss_pred ccccce---ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhH-----------hhCCC
Confidence 543221 3324556778888887754 3444443 77788888888864 266665543 23667
Q ss_pred ccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcC
Q 010462 420 KLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRR 482 (510)
Q Consensus 420 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 482 (510)
+|+++.|-. +++.+ ...+|..+++|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 335 ~L~~i~ip~--sv~~I-----~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPS--SVTKI-----PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECT--TCCBC-----CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred CCCEEEECc--ccCEE-----hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 888887743 23332 23456678899999988764321 2445567788777754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=8.5e-08 Score=91.04 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=19.7
Q ss_pred CCCCccEEEEeecCCccCC---CchhHHhhhhcccceeccCcc
Q 010462 332 PPPNLKKLRIDEYRGRRNV---VPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~---~p~~~~~~l~~L~~L~L~~~~ 371 (510)
.+++|++|+|+.|.+.... ++ ..+..+++|+.|++++|.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~-~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLL-DHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHH-TTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCCCCCChHHHHHHH-hhcccCCcceEEECCCCc
Confidence 3456666666655543210 11 122345666666666663
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=2.2e-07 Score=88.16 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=76.1
Q ss_pred CceeEEEEEeecCC-Cc----cccccccccCCCCccEEEeccCCc-----Cccc-cchhHhhhcCCceeEEEeccccccc
Q 010462 82 TKILHLMLTLHRGA-SV----PIPIWDNVKGLRGLRSLLVESGEY-----SWSN-EILPQLFDKLTCLRALKLEVREQGL 150 (510)
Q Consensus 82 ~~~~~L~l~~~~~~-~~----~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 150 (510)
.+++.|.+...... .. ...+..++..+++|+.|.+..... .+.. ..+...+..+++|+.|+++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~------ 180 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK------ 180 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE------
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe------
Confidence 55777777654432 00 011222334778999998865431 1111 1255667888899999998
Q ss_pred cccccccccccccccCccceEeccCCCCccc-cchhhh--cccccceeccCCCCc-------cccCchhh--hccccCce
Q 010462 151 YTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPETLC--ELYNLERLNVDHCKN-------LRELPRGI--GKLRKLMY 218 (510)
Q Consensus 151 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~~~--~l~~L~~L~L~~~~~-------~~~lp~~~--~~l~~L~~ 218 (510)
++.-..++. + .+++|+.|++..|. +.. ....+. .+++|+.|+|+.+.. +..+...+ ..+++|++
T Consensus 181 -g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 181 -GTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp -CCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred -CCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 553223443 3 37888999988776 332 222333 688888888853210 11121112 24677777
Q ss_pred eecCCCcc
Q 010462 219 LHNEGTDS 226 (510)
Q Consensus 219 L~l~~~~~ 226 (510)
|++.+|..
T Consensus 257 L~L~~~~i 264 (362)
T 2ra8_A 257 LGIVDAEE 264 (362)
T ss_dssp EEEESCTT
T ss_pred EeCCCCCC
Confidence 77777643
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=6.9e-07 Score=76.39 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=76.9
Q ss_pred cccCCCCccEEEeccC-CcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCC
Q 010462 104 NVKGLRGLRSLLVESG-EYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQ 176 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~ 176 (510)
.+...+.|++|++++| .+... ...+...+...+.|++|+|+ +|.+.. +...+...+.|++|+|++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-------~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-------CCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3447888888888888 63211 01144456777888888888 666543 4455566678888888888
Q ss_pred CCccc-----cchhhhcccccceecc--CCCCcccc----CchhhhccccCceeecCCCc
Q 010462 177 KKIEK-----LPETLCELYNLERLNV--DHCKNLRE----LPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 177 ~~~~~-----lp~~~~~l~~L~~L~L--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 225 (510)
. ++. +...+...+.|++|+| ++|..... +...+...++|++|++++|.
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8 655 4555677788888888 66763222 34445566788888888874
No 154
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.20 E-value=2.8e-07 Score=93.29 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCC--CCcCCCC-CCCHHHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCCeE
Q 010462 1 MAQ--DYLSEKG-PKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCL 64 (510)
Q Consensus 1 iae--g~i~~~~-~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e~~ 64 (510)
+|| ||+...+ +.+++++++ ||++|+++||++.+..+ ...+|+|||++|++|++++.+++.
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 467 9999877 678899999 99999999999987653 345699999999999999877653
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=5.1e-07 Score=81.20 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=27.6
Q ss_pred hcCCceeEEEeccccccccccccccc---cccccccCccceEeccCCCCccccchhhhccc--ccceeccCCCC
Q 010462 133 DKLTCLRALKLEVREQGLYTNFIKKI---PTNIEKLLHLKYLSLFGQKKIEKLPETLCELY--NLERLNVDHCK 201 (510)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~L~~~~ 201 (510)
..+++|+.|+|+ +|.+..+ |..+..+++|++|+|++|. +..+.. +..+. +|++|+|++|+
T Consensus 167 ~~l~~L~~L~Ls-------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECT-------TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECC-------CCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCc
Confidence 344555555555 4444433 2333445555555555555 443321 33333 45555555555
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=1.3e-06 Score=74.64 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=83.0
Q ss_pred cccchhHhhhcCCceeEEEecccccccccc-ccc-----cccccccccCccceEeccCCCCccc-----cchhhhccccc
Q 010462 124 SNEILPQLFDKLTCLRALKLEVREQGLYTN-FIK-----KIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNL 192 (510)
Q Consensus 124 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L 192 (510)
....+...+...+.|++|+|+ ++ .+. .+...+...++|++|+|++|. ++. +...+...++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~-------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCCEEEec-------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCc
Confidence 334466678889999999999 76 554 355667778899999999998 654 44556677899
Q ss_pred ceeccCCCCcccc-----CchhhhccccCceeec--CCCccccc----ccccccCcccccccCcEEEe
Q 010462 193 ERLNVDHCKNLRE-----LPRGIGKLRKLMYLHN--EGTDSLRY----LPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 193 ~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~ 249 (510)
++|+|++|. +.. +...+...++|++|++ ++|..... +...+...++|+.|++..+.
T Consensus 96 ~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 96 KSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 999999998 433 4566777889999999 77744322 22334445666666665443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=8.5e-06 Score=73.23 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=63.1
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC--ccceEeccCCCCccccch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL--HLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~ 184 (510)
.+++|++|+|++|.+..+.. ++..+..+++|++|+|+ +|.+..+ ..+..+. +|++|+|++|.+...+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls-------~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLS-------GNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECT-------TSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECC-------CCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 68999999999999655544 56778899999999999 9998877 3355555 999999999994444542
Q ss_pred -------hhhcccccceecc
Q 010462 185 -------TLCELYNLERLNV 197 (510)
Q Consensus 185 -------~~~~l~~L~~L~L 197 (510)
.+..+++|+.||=
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 3556777777763
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.97 E-value=6.4e-05 Score=72.25 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
...+|+.+.+... +..+-..+|..|.+|+.+.+. .+ +..+. .+|.++ .|+.+.+..+ ++.++..
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp-------~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~ 108 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVA-------ST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDY 108 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEEC-------TT-CCEECTTTTTTC-CCCEEEECTT--CCEECTT
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeC-------Cc-ceEechhhhcCC-CCceEECCce--eeEeccc
Confidence 4456666666554 444445556666777776664 32 44443 334443 4555555433 4444443
Q ss_pred hhcccccceeccCC
Q 010462 186 LCELYNLERLNVDH 199 (510)
Q Consensus 186 ~~~l~~L~~L~L~~ 199 (510)
.....+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 22223566666644
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=3.5e-06 Score=70.15 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.0
Q ss_pred cccccccccccccccccc
Q 010462 417 AFPKLKHLTFWVMNALEE 434 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~ 434 (510)
.+++|++|++++|+.++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 445555555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=2.3e-06 Score=71.27 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=42.8
Q ss_pred cccccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccC-chhhhcc----ccCceeecCCCcc
Q 010462 157 KIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLREL-PRGIGKL----RKLMYLHNEGTDS 226 (510)
Q Consensus 157 ~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~ 226 (510)
.+|.....-.+|+.|++++|. ++.. -..+.++++|+.|+|++|..++.- -..+..+ ++|++|++++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 345433334578888888887 5542 233677888888888888755431 1223443 3678888877743
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.79 E-value=0.00024 Score=68.14 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=62.4
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
+|.+|.+|+.+.+..+ +..+-..+|..+ .|+.+.+. . .+..+.+......+|+.+.+..+ +..+.
T Consensus 64 aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~-------~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~ 128 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGM-------E-RVKKFGDYVFQGTDLDDFEFPGA--TTEIG 128 (379)
T ss_dssp TTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEEC-------T-TCCEECTTTTTTCCCSEEECCTT--CCEEC
T ss_pred HhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECC-------c-eeeEeccceeccCCcccccCCCc--ccccc
Confidence 3459999999999765 455556678887 57777664 3 35566443333458999998765 44554
Q ss_pred hhhhcccccceeccCCCCccccC-chhhhccccCceeecCCC
Q 010462 184 ETLCELYNLERLNVDHCKNLREL-PRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 184 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~ 224 (510)
.....-.+|+...+..+ +..+ ...+..+.+++...+...
T Consensus 129 ~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 129 NYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 43322235655555443 2222 233556677777666544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.74 E-value=0.0081 Score=50.84 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCCCccEEEeccC-CcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESG-EYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
.-+.|+.|+|+++ .+... ...+..++..-..|+.|+|+ +|.++. +.+.+..-..|++|+|++|. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 5567777777764 42110 01134445566677777777 665542 33444445667777777777 5
Q ss_pred cc-----cchhhhcccccceeccCCCCc--cc-----cCchhhhccccCceeecCCC
Q 010462 180 EK-----LPETLCELYNLERLNVDHCKN--LR-----ELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~-----lp~~~~~l~~L~~L~L~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 224 (510)
+. +-..+..-+.|+.|+|+++.. +. .+...+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 53 223344445577777765431 11 12233444556666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.03 Score=44.01 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccccc--cccccccccCccceEeccCCCCccccchh-hhcccccceeccCCCC
Q 010462 152 TNFIK--KIPTNIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCK 201 (510)
Q Consensus 152 ~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 201 (510)
+..+. .+|..+. .+|++|+|++|. ++.+|.. |..+++|++|+|++|.
T Consensus 17 ~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 17 RRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 44554 5554332 346666666666 5555543 4456666666666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.96 E-value=0.022 Score=48.17 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=62.2
Q ss_pred cccchhHhhhcCCceeEEEecccccccccc-ccc-----cccccccccCccceEeccCCCCccc-----cchhhhccccc
Q 010462 124 SNEILPQLFDKLTCLRALKLEVREQGLYTN-FIK-----KIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNL 192 (510)
Q Consensus 124 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L 192 (510)
....+...+..-+.|+.|+|+ ++ .+. .+.+.+..-..|+.|+|++|. +++ +...+..-+.|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~-------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCccEEECC-------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCcc
Confidence 333355556677889999998 64 443 245566667789999999998 654 34445666789
Q ss_pred ceeccCCCCcccc----CchhhhccccCceeecCCC
Q 010462 193 ERLNVDHCKNLRE----LPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 193 ~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 224 (510)
++|+|++|.+... +-..+..-+.|++|+++++
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 9999998883221 2333445566888888764
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.75 E-value=0.12 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=23.2
Q ss_pred ceeEEEeccccccccccccccccc-cccccCccceEeccCCC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQK 177 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 177 (510)
+|++|+|+ +|.+..+|. .|..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls-------~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLT-------GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECT-------TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECC-------CCcCCccChhhhhhccccCEEEecCCC
Confidence 46777777 777777753 34557777777777776
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.63 E-value=0.1 Score=58.21 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCC
Q 010462 15 GDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNG 62 (510)
Q Consensus 15 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e 62 (510)
++.++.++++|+++||++.... ++..+|+|||++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 5788999999999999997543 44456999999999999987654
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.07 E-value=0.62 Score=49.76 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHH
Q 010462 16 DIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQ 56 (510)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~ 56 (510)
+.++.+|++|+++|||+... ...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 46899999999999999742 2246899999999653
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.47 E-value=1.1 Score=45.20 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHh
Q 010462 16 DIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLC 59 (510)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 59 (510)
+.++.++++|+++||++.... +....|+|||++|++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 467899999999999986543 33456899999999999874
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.99 E-value=20 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEec
Q 010462 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLE 144 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 144 (510)
.+|..|+.+.+-.+ +..+-..+|..|.+|+.+.+.
T Consensus 17 ~~c~~L~~i~iP~~----v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 17 AGNTVIREITVQPN----IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEECTT----SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCCCCCcEEEcCCc----hheEcHHHHhccCCccEEEEc
Confidence 36666666666554 333334445666666666655
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.80 E-value=83 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=18.6
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDH 199 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~ 199 (510)
..|.++..|+.+.+..+ ++.+.. +|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34455555555555443 333322 345555555555543
Done!