Your job contains 1 sequence.
>010464
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRI
FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW
PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPS
YRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE
VAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEF
TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVS
HDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSH
DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF
FVCARAEGPASNPEANCGYFKWAFSKSKQK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010464
(510 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 872 2.9e-87 1
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 195 2.0e-32 5
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 191 2.7e-31 4
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 195 4.2e-30 3
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 190 5.5e-29 3
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 186 3.8e-28 4
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 186 3.8e-28 4
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 179 5.1e-28 3
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 188 5.6e-28 4
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 188 5.6e-28 4
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 190 6.4e-21 3
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 171 7.9e-19 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 127 3.9e-17 5
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 131 4.6e-14 4
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 106 1.1e-06 4
UNIPROTKB|E1C286 - symbol:E1C286 "Uncharacterized protein... 110 5.1e-05 3
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 123 6.9e-05 1
RGD|1310562 - symbol:Neil3 "nei endonuclease VIII-like 3 ... 127 0.00017 2
UNIPROTKB|F1N383 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00019 1
UNIPROTKB|Q3MHN7 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00019 1
ZFIN|ZDB-GENE-041114-18 - symbol:neil3 "nei endonuclease ... 123 0.00029 1
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 182/359 (50%), Positives = 237/359 (66%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++EF F + RWE LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+
Sbjct: 164 RIEFKHRFYGVLERRWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSL 223
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H
Sbjct: 224 LVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGH 283
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ CHV ECDIL +YKR+K N P+ RWKGG+ T+ +GSDH PV++ ++P+IP+HST
Sbjct: 284 SFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHST 342
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
P LASRYLP+I G QQTLVSV KR ++ K+ + S S +SN++ D S
Sbjct: 343 PPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---P 399
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
L N GI CS N+ + G T+ E + ++ + S + SS D
Sbjct: 400 LRNCGSMGISLEKSCSFENKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDG 457
Query: 335 ARKKAKKSQLGQLSLKSFFHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 390
RKKA+K Q QLSLKSFF S V++ D ++S +S + S+T+ ++S +E E
Sbjct: 458 DRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
Score = 264 (98.0 bits), Expect = 9.0e-20, P = 9.0e-20
Identities = 74/213 (34%), Positives = 107/213 (50%)
Query: 287 VYCSSSNQESE----GEF-TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
V CSSS Q + G+ T + NC S ++ + S + S V A A
Sbjct: 378 VSCSSSTQSNTSSICGDISTGPLRNC-GSMGISLEKSC---SFENKSTSGVTEAETVAAT 433
Query: 342 SQLGQLS--LKSFFHKRSNVSHDDNNS----ITDTSLNVNNSVTDTSLSQEEVPESHHHS 395
+ LS +++ + N+S D + I + L++ + T S S +
Sbjct: 434 GSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYV 493
Query: 396 NKIPVTDY-SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
+ P + S + + G S + E+ K++N+ AL+EW+RIQ LM+ SI
Sbjct: 494 SSSPSSQVESITEPNVSGKEDSEPTTSTQEQDQTGSSAKQKNDAALMEWQRIQNLMQNSI 553
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 195 (73.7 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 508
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W K K
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV-EKGK 558
Score = 143 (55.4 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 98 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 239 SGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI 279
Score = 92 (37.4 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 7 IVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDL 66
I +DG L ++ VI Y C + + EF L F + R E +L G + ++GD+
Sbjct: 127 IGQDG-LQKLTVINVY--CPRADPDKPERKEFKLQFYRLLQCRAEAILSSGSHVIILGDV 183
Query: 67 NIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES 98
N + ID CD +F N R W L E+
Sbjct: 184 NTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFET 217
Score = 75 (31.5 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 191 LEGSDHAPVYMCLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK 249
+EGSDH PV+ L + P+ P + +R++P G QQ L L K KQ S
Sbjct: 299 VEGSDHCPVWAQLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNS 355
Query: 250 FSGSLPAESNSTGDTED 266
SLP S G+ +
Sbjct: 356 SEKSLPG-SQDAGEIRE 371
Score = 41 (19.5 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 302 KTIENCRDSANVASHSTI 319
K IE+C+D S+S I
Sbjct: 431 KQIESCQDGPGTGSNSKI 448
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 191 (72.3 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 424 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 483
E+K K K+ W+ + + +PLC GH+EPCV R VKK GP FGR+F++C
Sbjct: 435 EEKNKVPESKDEKGERTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMC 493
Query: 484 ARAEGPASNPEANCGYFKWA 503
AR GP S+P + C +F W+
Sbjct: 494 ARPRGPPSDPSSRCNFFLWS 513
Score = 188 (71.2 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 41/114 (35%), Positives = 60/114 (52%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 166 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL 279
Score = 75 (31.5 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 45 (20.9 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 331 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 390
H R RK + Q +L S+F S++S + + +L + +T T + EEV
Sbjct: 374 HSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQ--TSGVELPTLPLVGPLT-TPKTAEEVAT 430
Query: 391 SH--HHSNKIP 399
+ NK+P
Sbjct: 431 ATVLEEKNKVP 441
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 195 (73.7 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 493 PEANCGYFKWA 503
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
Score = 175 (66.7 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 48/144 (33%), Positives = 72/144 (50%)
Query: 5 KLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVG 64
K+ +DG + VI Y C + +L F + F + R E LL G + ++G
Sbjct: 139 KIRTQDGDEKSLTVINVY--CPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILG 196
Query: 65 DLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VESG---GSFFDVFRSKHPERRE 115
DLN A ID DA F ++ R W +L ++G G F D +R P+++
Sbjct: 197 DLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQAGSHMGPFIDSYRYFQPKQKG 256
Query: 116 AYTCWPSNTGAEQFNYGTRIDHIL 139
A+TCW + TGA NYG+RID++L
Sbjct: 257 AFTCWSTVTGARHLNYGSRIDYVL 280
Score = 80 (33.2 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
GSDH PV L P +P P L +R+LP G Q ++ L++ E
Sbjct: 301 GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 190 (71.9 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
Score = 173 (66.0 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 41/114 (35%), Positives = 59/114 (51%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL 280
Score = 77 (32.2 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
GSDH PV L V +P P L +R+LP G Q ++ L+ E
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 186 (70.5 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 165 (63.1 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 40/114 (35%), Positives = 59/114 (51%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 75 (31.5 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 334 RARKKAKKSQLGQLSLKSFFHKRSN 358
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 186 (70.5 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 165 (63.1 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 40/114 (35%), Positives = 59/114 (51%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 75 (31.5 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 334 RARKKAKKSQLGQLSLKSFFHKRSN 358
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 179 (68.1 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GD+N A ID C+AG F ++ R W
Sbjct: 166 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMD 225
Query: 93 SML--VE--SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L +E +G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 226 GLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL 279
Score = 178 (67.7 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 464 MPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
Score = 75 (31.5 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 188 (71.2 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 173 (66.0 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 41/114 (35%), Positives = 61/114 (53%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 68 (29.0 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 253 SLPAESNST 261
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 334 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 188 (71.2 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 173 (66.0 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 41/114 (35%), Positives = 61/114 (53%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 68 (29.0 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 253 SLPAESNST 261
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 334 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 190 (71.9 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
K+ V W+ + + +PLC GH+EPCV R VKK GP FGR F++CAR GP S+
Sbjct: 449 KDEKEVRTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSD 507
Query: 493 PEANCGYFKWA 503
P + C +F W+
Sbjct: 508 PSSRCNFFLWS 518
Score = 115 (45.5 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 34/113 (30%), Positives = 49/113 (43%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F N R W
Sbjct: 173 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFQSNPLREWLD 232
Query: 93 SMLVESGG-----SFFDVFRSK-HPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+ GG S F V+ HP ++ + W + + Y ID++L
Sbjct: 233 YSRMNPGGEQAPVSLFCVYYIYLHPHQQWVWEEWTPLSSSYHVCYIVSIDYVL 285
Score = 57 (25.1 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 331 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 390
H R RK + Q SL S+F SN+S + + +L + + +T T ++E
Sbjct: 379 HSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAMA 436
Query: 391 SH-HHSNKIP 399
+ NK+P
Sbjct: 437 TVVKEKNKVP 446
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 171 (65.3 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 54/188 (28%), Positives = 82/188 (43%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EF 87
+LE+ +F ++ R E L+ +G R+I +VGD+NI ID D ++ E
Sbjct: 160 RLEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMES 219
Query: 88 RIWFRSMLVESG-GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R W R +L+ S G D+ R +HP R+ +TCW + NYGTRID+ L L
Sbjct: 220 RQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLP 279
Query: 147 --QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
Q D+ + + H C + +D K G S L + H Y
Sbjct: 280 WVQDADIMAEVMGSDH---CPVYLDLKEEYEGKKLSNFLSHSKEPPLLSTAHHSAYRPSK 336
Query: 205 EVPEIPQH 212
+ + QH
Sbjct: 337 NIHSMFQH 344
Score = 133 (51.9 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 413 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
V+ V ++ + G K N A W++I E + PLC+GHKEPC V+KP
Sbjct: 419 VSIEVLDNNNESDIGLTVKKKVENGNA---WKQI--FSERAPPLCEGHKEPCKYLTVRKP 473
Query: 473 GPTFGRRFFVCARAEG 488
G +GR+F++CAR G
Sbjct: 474 GINYGRKFWICARPVG 489
Score = 57 (25.1 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 305 ENCRDSANVASHSTITQGSSN-HISPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNV 359
EN SA+ S T+++ +S + + ++ R+K + L Q K +K +V
Sbjct: 360 ENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDV 419
Query: 360 SHD--DNNSITDTSLNVNNSV 378
S + DNN+ +D L V V
Sbjct: 420 SIEVLDNNNESDIGLTVKKKV 440
Score = 52 (23.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 238 KREVAKQGKSCKFSGSLPAESNSTGDTEDCS-ENVDRSLNNYCDSGI 283
KR +Q K F E T TED S E +D NN D G+
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN--NNESDIGL 434
Score = 39 (18.8 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 283 ILQGVYCSSSNQESEGEFTK 302
IL GVYC ++ E+ E+ +
Sbjct: 146 ILIGVYCPVNSGENRLEYRR 165
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 127 (49.8 bits), Expect = 3.9e-17, Sum P(5) = 3.9e-17
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P C H E C++ KKPGP FGR F++C R GP+ N E C F WA
Sbjct: 552 PKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
Score = 123 (48.4 bits), Expect = 3.9e-17, Sum P(5) = 3.9e-17
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 103 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 252 FDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS 290
Score = 73 (30.8 bits), Expect = 3.9e-17, Sum P(5) = 3.9e-17
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK 84
F +F M R L+ G+R+FV GD+NI+ ID A + K
Sbjct: 166 FRQNFLDLMDARVRNLVALGKRVFVTGDINISRGEIDAAHAAENIKK 212
Score = 44 (20.5 bits), Expect = 3.9e-17, Sum P(5) = 3.9e-17
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 191 LEGSDHAPVY 200
L GSDH PVY
Sbjct: 306 LMGSDHCPVY 315
Score = 44 (20.5 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 283 ILQGVYCSSSNQESEGEFTKTIENCRDS 310
+L G+YC ++ ES F + + D+
Sbjct: 149 VLIGLYCPANRDESRDAFRQNFLDLMDA 176
Score = 42 (19.8 bits), Expect = 3.9e-17, Sum P(5) = 3.9e-17
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 344 LGQLSLKSFFHKRSNVSHDDN 364
+GQ +LK FF + + DN
Sbjct: 461 IGQSTLKGFFKPKCTLEPKDN 481
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 131 (51.2 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 308 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 367
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 368 TDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS----CSVHELHGVNSSVCSHDQ 422
TS+ S T S S ++P + ++K S L+G S +
Sbjct: 475 ERTSIRTTPSPTKCSNASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGGRSFNSGKED 534
Query: 423 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 481
D K + + E W ++ L + +P C+ H EPC++ KKPG GR F+
Sbjct: 535 DTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKPGINCGRSFY 591
Query: 482 VCARAEGPASNPEAN----CGYFKWA 503
+C R GP+ E CG F W+
Sbjct: 592 ICGRPLGPSGEKEKGTEWRCGTFIWS 617
Score = 106 (42.4 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 103 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+D+ R HP+R YTCW + A N+G+RID++LC+
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCS 262
Score = 59 (25.8 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI 89
+F +F +M R L+ G+++ + GDLNI +D K E I
Sbjct: 137 DFRQAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDTAGILERLRKEEMTI 189
Score = 47 (21.6 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 191 LEGSDHAPVYMCLGE 205
L GSDH PVY L +
Sbjct: 278 LLGSDHCPVYATLSD 292
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 283 ILQGVYCSSSNQESEGEFTKTIENCRDS 310
+L GVY ++ E+ +F + D+
Sbjct: 121 VLIGVYSPATRDETRTDFRQAFHKAMDA 148
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
PLC+ H E + + K GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCR-HGEESMLKT-SKTSANPGRKFWICKRSRGDSNNTESSCGFFQW 519
Score = 56 (24.8 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHIL 139
R + YT W NYG+RID IL
Sbjct: 305 RLKMYTVWNMLKNLRPSNYGSRIDFIL 331
Score = 53 (23.7 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 193 GSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 247
GSDH PVY L + P Q P +RY +R ++ + K++ K+
Sbjct: 351 GSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMFAKKDTNKESNK 408
Query: 248 CKF 250
K+
Sbjct: 409 QKY 411
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 83
F L F + R L G++I ++GD+N+ ID D F+
Sbjct: 195 FRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFS 240
Score = 43 (20.2 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 320 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 363
T SN + V + K S + SL SFF K N DD
Sbjct: 402 TNKESNK-QKYCVSKVMNTKKNSNIKNKSLDSFFQK-VNGEKDD 443
>UNIPROTKB|E1C286 [details] [associations]
symbol:E1C286 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831 Pfam:PF06839
PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51066
PROSITE:PS51068 SMART:SM00547 SMART:SM00898 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:TKDLICF
GeneTree:ENSGT00510000048146 EMBL:AADN02008928 IPI:IPI00592615
Ensembl:ENSGALT00000017443 ArrayExpress:E1C286 Uniprot:E1C286
Length = 600
Score = 110 (43.8 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
Q + S P C H + CV ++V K GP GR FFVC P E CG+F+WA +K
Sbjct: 542 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVC-----PLQK-EKQCGFFQWAENK 593
Score = 64 (27.6 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 351 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 410
+F H +SNV H S+ + VT + S + P S H K T + SVH+
Sbjct: 422 NFSHNQSNVYH----SVISIDKYCSTDVTSAASSSCQEPLSFKHIKKKQKTHHVPSVHQY 477
Query: 411 HG 412
+G
Sbjct: 478 NG 479
Score = 42 (19.8 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 257 ESNSTGDTEDCSENVDRSLN--NY-CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 313
E +S+ TE+ ++ D ++N Y C+ + + + G T + + + A +
Sbjct: 344 EVSSSLKTENVEDSADFNINLIKYPCNEFRKPSTEIKINRKAAFGNTTLVLTDLGNKAVL 403
Query: 314 ASHSTITQGSSNHISP 329
++ G S++++P
Sbjct: 404 KGDIQVSDGCSDYVAP 419
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 123 (48.4 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 37/109 (33%), Positives = 51/109 (46%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVG-DLNIAPAAIDRCDAGPDFAKNEFRIWFRS 93
+ E+ + F ++ R L I ++G D+N AP ID D F I RS
Sbjct: 123 RFEYKMQFHDALARRIHGYLLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERS 182
Query: 94 MLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
L E FD FR K+P ++E ++ W G Q N G RIDHIL +
Sbjct: 183 KLRELLNLGLFDTFRMKYPTKQE-FSWWDYRGGGLQRNEGMRIDHILAS 230
>RGD|1310562 [details] [associations]
symbol:Neil3 "nei endonuclease VIII-like 3 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006284 "base-excision
repair" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISO] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 RGD:1310562
GO:GO:0005634 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946
OrthoDB:EOG48GW30 GeneTree:ENSGT00510000048146 IPI:IPI00358506
Ensembl:ENSRNOT00000015623 Uniprot:D3ZKJ8
Length = 607
Score = 127 (49.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 502 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 549
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 338 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 397
K + +LG+ S ++F + + I + N N ++ T Q+ +S ++
Sbjct: 261 KIRVCRLGENSRMTYFCPHCQKENPQHVQICQQTANKNAEISWTPKGQDCFTDSVARKSE 320
Query: 398 IPVTDYSCSVHEL-HGVNSSVCSHDQDEKKGKRFLDKERNNVA 439
+SC V L + +++ C + L E N++A
Sbjct: 321 ---EQWSCMVCTLINKPSATACDACLTTRPVDSVLKNEENSIA 360
>UNIPROTKB|F1N383 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0000405 "bubble DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 IPI:IPI00706576
UniGene:Bt.37835 OMA:TKDLICF GeneTree:ENSGT00510000048146
EMBL:DAAA02060028 Ensembl:ENSBTAT00000007661 Uniprot:F1N383
Length = 606
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 330 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 381
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 382 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 441
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 442 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 500
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 501 KWA 503
+WA
Sbjct: 546 EWA 548
>UNIPROTKB|Q3MHN7 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0000405
"bubble DNA binding" evidence=ISS] [GO:0006284 "base-excision
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 eggNOG:COG0266 SUPFAM:SSF81624
SUPFAM:SSF46946 EMBL:BC105168 IPI:IPI00706576 RefSeq:NP_001029662.1
UniGene:Bt.37835 ProteinModelPortal:Q3MHN7 STRING:Q3MHN7
PRIDE:Q3MHN7 GeneID:515343 KEGG:bta:515343 CTD:55247
HOGENOM:HOG000113754 HOVERGEN:HBG052594 InParanoid:Q3MHN7 KO:K10569
OrthoDB:EOG48GW30 NextBio:20871781 Uniprot:Q3MHN7
Length = 606
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 330 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 381
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 382 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 441
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 442 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 500
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 501 KWA 503
+WA
Sbjct: 546 EWA 548
>ZFIN|ZDB-GENE-041114-18 [details] [associations]
symbol:neil3 "nei endonuclease VIII-like 3 (E.
coli)" species:7955 "Danio rerio" [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF00641 Pfam:PF01149 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 SMART:SM00898
ZFIN:ZDB-GENE-041114-18 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0005622 GO:GO:0003906 GO:GO:0006289 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0016799 GeneTree:ENSGT00510000048146
EMBL:CR853287 IPI:IPI00837209 Ensembl:ENSDART00000123343
ArrayExpress:F1Q570 Bgee:F1Q570 Uniprot:F1Q570
Length = 577
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 44/149 (29%), Positives = 63/149 (42%)
Query: 370 TSLNVN-NSVTDTSLSQEEVPESHH----HSN---KIP---VTDYSCSVHELHGVNSSVC 418
TSL+ +S + ++SQ PE+ H N K P V+ +E + S
Sbjct: 378 TSLSAKPDSPSSPAISQAHTPETMRGLSTHGNWQRKSPSNGVSGMQFKGNEPYK-RESPT 436
Query: 419 SHDQDEKKGKRFLDK-ERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGP 474
H Q K+ K N+ + R QQ + S+P CK H PC RVV K G
Sbjct: 437 DHSQPNKRMKTTNGTFSGGNIKHISSRGTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGE 496
Query: 475 TFGRRFFVCARAEGPASNPEANCGYFKWA 503
GR+F+ C+ E C +F+WA
Sbjct: 497 NKGRQFYTCSLPR------ETQCNFFEWA 519
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 510 510 0.00087 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 623 (66 KB)
Total size of DFA: 339 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.31u 0.86s 44.17t Elapsed: 00:00:03
Total cpu time: 43.32u 0.86s 44.18t Elapsed: 00:00:03
Start: Fri May 10 06:52:43 2013 End: Fri May 10 06:52:46 2013