BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010464
(510 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis]
gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis]
Length = 586
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/476 (57%), Positives = 337/476 (70%), Gaps = 23/476 (4%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + + RWE LL QGRRIFVVGDLNIAP A+DRCDA PDF KNEFRIWFRSM
Sbjct: 134 RIHFKLLFYNILQKRWESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFEKNEFRIWFRSM 193
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LV+SGG FFDVFRSKHP+RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ+HD Q H
Sbjct: 194 LVKSGGPFFDVFRSKHPDRREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQEHDFQVH 253
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+FV+CH+ +CDILIDYKRWKPG+ + RWKGG T+LEGSDHAPVY L E+P+IPQH T
Sbjct: 254 DFVSCHMKDCDILIDYKRWKPGD--TMRWKGGWGTKLEGSDHAPVYTSLVEIPDIPQHGT 311
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
PSL++RYLP+I G QQTLVSVLMKR+ + Q S G++ ++ C+E++ +
Sbjct: 312 PSLSARYLPMIHGFQQTLVSVLMKRQASTQVSSSFSDGNVTIKA--------CNESI-KG 362
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
L N C+ S + ++S+G + ++C+D ++ + S HI+ H +
Sbjct: 363 LYNNCNISDHSASDSSCATKDSDGAILRMEKHCKDFSDQTCSDSTIMLQSRHINSMHTEG 422
Query: 335 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 394
+KKA+KSQ QLSL+SFF + N T N+ D S SQE V S+
Sbjct: 423 TKKKARKSQCSQLSLRSFFQRTPN-----------TRSGAENTALDISHSQENVSNSNSP 471
Query: 395 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
++ D + G+NSS + DQDE +KE+NNVALLEW+RIQQLM+ SI
Sbjct: 472 PSETASQDDHNNTPGHCGLNSSSGTQDQDEINNGP-SEKEKNNVALLEWQRIQQLMQNSI 530
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
PLCKGHKEPCV+R+VKKPGPT G RF+VCARAEGPASNPEANCGYFKWA SKS+QK
Sbjct: 531 PLCKGHKEPCVSRIVKKPGPTCGHRFYVCARAEGPASNPEANCGYFKWASSKSRQK 586
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
1 [Vitis vinifera]
Length = 625
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/481 (54%), Positives = 333/481 (69%), Gaps = 26/481 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F +F + RWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSM
Sbjct: 166 RIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSM 225
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ
Sbjct: 226 LVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDR 285
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
FVTCHV ECDIL +KRWKPGN P RWKGG S +LEGSDHAPV+M L ++P++ QHST
Sbjct: 286 IFVTCHVKECDILTQFKRWKPGNKP--RWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHST 343
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
PSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS
Sbjct: 344 PSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRS 400
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISP 329
+ C S + G + SSSN +SEG + +I + DS+N + + S I Q S +P
Sbjct: 401 SQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TP 457
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
V +KKA++SQ QLSLKSFF K SNV V+N+ D SL Q +
Sbjct: 458 GTV--TKKKARQSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADES 504
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
+S+ + NK + D ++ ++ S + +Q +++N++AL+EW+RIQQL
Sbjct: 505 KSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQL 564
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQ 509
M+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+
Sbjct: 565 MQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRH 624
Query: 510 K 510
+
Sbjct: 625 R 625
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
2 [Vitis vinifera]
Length = 596
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/481 (54%), Positives = 333/481 (69%), Gaps = 26/481 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F +F + RWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSM
Sbjct: 137 RIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSM 196
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ
Sbjct: 197 LVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDR 256
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
FVTCHV ECDIL +KRWKPGN P RWKGG S +LEGSDHAPV+M L ++P++ QHST
Sbjct: 257 IFVTCHVKECDILTQFKRWKPGNKP--RWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHST 314
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
PSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS
Sbjct: 315 PSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRS 371
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISP 329
+ C S + G + SSSN +SEG + +I + DS+N + + S I Q S +P
Sbjct: 372 SQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TP 428
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
V +KKA++SQ QLSLKSFF K SNV V+N+ D SL Q +
Sbjct: 429 GTV--TKKKARQSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADES 475
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
+S+ + NK + D ++ ++ S + +Q +++N++AL+EW+RIQQL
Sbjct: 476 KSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQL 535
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQ 509
M+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+
Sbjct: 536 MQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRH 595
Query: 510 K 510
+
Sbjct: 596 R 596
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa]
gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/478 (55%), Positives = 321/478 (67%), Gaps = 21/478 (4%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++EF + F + RWE LL +GRR+FVVGDLNIAP A+DRCDA DF KNEFR WFRS+
Sbjct: 159 RIEFKMKFFKILQKRWENLLHEGRRVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSI 218
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L+ SGG F DVFR+KHP+RREAYTCW S+TGAE FN+G+RIDHILCAGPCLHQ+HDLQ H
Sbjct: 219 LMMSGGLFVDVFRAKHPDRREAYTCWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGH 278
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
NF++CHV ECDIL YKRWKPG+ S RWKGG +LEGSDHAPVYM L E+ +IP+HST
Sbjct: 279 NFLSCHVKECDILTQYKRWKPGD--STRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHST 336
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
P L++RYLP+I GVQQTLV++LMKR+ A Q +S S + S+ + CSE++ RS
Sbjct: 337 PPLSARYLPMIHGVQQTLVTLLMKRQAATQIQS---SRISSSFSDGDATIKACSESIKRS 393
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD--SANVASHSTITQGSSNHISPFHV 332
N S CS + +E + +K EN +D N T S H
Sbjct: 394 FNECSVSRPSTSPSCSLT-EEFDSAISKRDENSKDLTDENQGCPDTTMILQSQHTKFVPA 452
Query: 333 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 392
+ +KK +KS+ QLSL+SFF K N+ S NS T+ S SQ E S
Sbjct: 453 EGTKKKPRKSRCSQLSLRSFFQKSPNL-----------STGAENSSTNASPSQAEPNTSS 501
Query: 393 HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 452
+ + D S S +N S S QD K L++E+NNVALLEW+RIQQLM
Sbjct: 502 YSNGSHAPGDKSSSPRHCQ-LNPSAGSQYQD-KGNDGSLEREKNNVALLEWQRIQQLMRN 559
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
SIP+CKGHKEPCVAR+VKKPG TFG RFFVC+RAEGP SNPEANCGYFKWA SKS++K
Sbjct: 560 SIPVCKGHKEPCVARIVKKPGRTFGHRFFVCSRAEGPVSNPEANCGYFKWASSKSQRK 617
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
Length = 611
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/474 (52%), Positives = 315/474 (66%), Gaps = 29/474 (6%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE 97
F L+F + + RWE LL G+R+FVVGDLNIAP ++DRCDAGPDF NEFR W RS++V
Sbjct: 166 FKLNFYNVLQKRWEHLLHMGKRVFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLMVA 225
Query: 98 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
GG F D+FR+KHP+RR+AYTCWP +TGAE FNYGTRIDHILCAGPCLH ++L HN V
Sbjct: 226 CGGRFIDIFRAKHPDRRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHHDNNLPGHNIV 285
Query: 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL 217
CHV ECDIL YKRWK GN SYRWK + +LEGSDHAPV L E+P+ PQHSTPSL
Sbjct: 286 ACHVMECDILSQYKRWKDGN--SYRWKEERTVKLEGSDHAPVCASLLEIPDTPQHSTPSL 343
Query: 218 ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN 277
++RY P I G+QQTLVS+L+KR+ A+ CK S S+S G+ +CS+ + S +N
Sbjct: 344 SARYNPKIHGLQQTLVSMLLKRQAAEDSAPCKKS-----NSSSLGNLGNCSQGFNGSFDN 398
Query: 278 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRAR 336
SG L CS +N E+E +T E S A A+ T+T H + R
Sbjct: 399 GDQSGDLPSESCSLTNLETEDSLLETGECSGGSYAKEAACKTLTTHEPLHAKALPENPTR 458
Query: 337 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 396
K+ ++ Q+SLK+FF K S VS+D ++S D+S++ ++ S+ E+P S+
Sbjct: 459 KRVRR--CSQMSLKAFFQKNSVVSNDADSSNADSSISKGDTSESNSI---EIPRSN---- 509
Query: 397 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 456
T S S +L Q + + +KE++ VA+LEWRRIQQ+M+ SIPL
Sbjct: 510 ----TQISDSGRQLEAY--------QGQSQINATPEKEKSGVAMLEWRRIQQVMQNSIPL 557
Query: 457 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
CKGHKE CVARVVKK GP GRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 558 CKGHKETCVARVVKKQGPNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK 611
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera]
Length = 632
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/459 (53%), Positives = 313/459 (68%), Gaps = 26/459 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F +F + RWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSM
Sbjct: 173 RIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSM 232
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ
Sbjct: 233 LVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDR 292
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
FVTCHV ECDIL +KRWKPGN P RWKGG S +LEGSDHAPV+M L ++P++ QHST
Sbjct: 293 IFVTCHVKECDILTQFKRWKPGNKP--RWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHST 350
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
PSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS
Sbjct: 351 PSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRS 407
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISP 329
+ C S + G + SSSN +SEG + +I + DS+N + + S I Q S +P
Sbjct: 408 SQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TP 464
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
V +KKA++SQ QLSLKSFF K SNV V+N+ D SL Q +
Sbjct: 465 GTV--TKKKARQSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADES 511
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
+S+ + NK + D ++ ++ S + +Q +++N++AL+EW+RIQQL
Sbjct: 512 KSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQL 571
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 488
M+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAE
Sbjct: 572 MQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEA 610
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Glycine max]
Length = 622
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/483 (51%), Positives = 318/483 (65%), Gaps = 30/483 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F F + RWE LL QGRRIFVVGDLNIAP AIDRCDAGPDF NEFR WF+SM
Sbjct: 163 RIQFKQKFYRILQKRWESLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSM 222
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L+E+GG F DVFR+KHP+RREAYTCW NTGAE FN+G+RIDHIL AG CLH+ DLQ H
Sbjct: 223 LIENGGRFSDVFRAKHPDRREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCH 282
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ CHV ECDIL YKR KP + + RWKGG S +LEGSDHAPV M L E+P++ HST
Sbjct: 283 SFIRCHVKECDILTQYKRCKPES--TLRWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHST 340
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
PSL++RY+P++ G+QQTLVSVLMKR+V++ KSC+ + E + T + E V+R+
Sbjct: 341 PSLSARYVPMVHGIQQTLVSVLMKRQVSELMKSCE----MAQEDIAMDGTCEREEPVNRA 396
Query: 275 LNNYCDSGILQGVYCSSSNQ-----ESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 329
G S N+ + E + ++ + S + S GS N S
Sbjct: 397 -----------GSSTRSPNECHFPPSQDFEVSSILKPNKLSGGSSQESVSKSGSENKKST 445
Query: 330 F-HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS-LSQEE 387
+R+ KKA+ Q QLSL+SFF K +N+ D +SI + VN+S TD S +Q E
Sbjct: 446 TRQCNRSNKKARNGQWSQLSLRSFFQKSTNL--DKGSSIKEV---VNDSCTDYSNNNQAE 500
Query: 388 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQ 447
+ +IP + + +++ C D G +E++NVA LEW+RI+
Sbjct: 501 PSQPSPRLQEIPTVCAHNGSPKQYELDTDTCDPDLAGPNGSS-TKEEKSNVASLEWQRIK 559
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507
QLM+ SIP+CKGHKEPC+ARVVKK GP FGRRF+VCARAEGPASNPEANCGYFKWA SKS
Sbjct: 560 QLMQNSIPICKGHKEPCIARVVKKQGPNFGRRFYVCARAEGPASNPEANCGYFKWASSKS 619
Query: 508 KQK 510
+ K
Sbjct: 620 RNK 622
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 613
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/478 (50%), Positives = 318/478 (66%), Gaps = 30/478 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F +F + R E LL QGRRIFVVGDLNIAP A+DRCDAGPDF KNEFR WFRSM
Sbjct: 164 RIQFKKTFYRILQKRLESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSM 223
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L+E+GG F DVFR+KHP++ +AYTCW ++GAE FNYG+RIDHILCAG CLH+ DLQSH
Sbjct: 224 LIENGGRFSDVFRAKHPDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSH 283
Query: 155 NFVTCHVNECDILIDYKRWKP-GNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 213
+F+ CHV EC+IL YKR+KP S+RWKGG S +LEGSDHAPV L +PE+ HS
Sbjct: 284 SFIGCHVKECEILTQYKRFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHS 343
Query: 214 TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDR 273
TPSL+SRY+P++ GVQQ+LVS+LMKR V+ +SCK + + + E E VD+
Sbjct: 344 TPSLSSRYVPMVHGVQQSLVSLLMKRRVS---ESCKMAN---GDILTVSTCERIEEPVDK 397
Query: 274 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH-V 332
++ C+ + NQ+SEG K E SA + S GS S
Sbjct: 398 IGSSTCECDLF-------PNQDSEGSILKPNEL---SAGSSQESVSKSGSVYEKSITQKC 447
Query: 333 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 392
+ ++KKA+ SQ QLS++SFF K +++ +N + D+ ++ +N+ + S ++ E+
Sbjct: 448 NESKKKARNSQSSQLSIRSFFQKSTSL----DNGVKDSCISYSNNEAEPSQPNSQLLET- 502
Query: 393 HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 452
+ D+S + + +N+ VC D E +E++NVA EW+RIQ+LM+
Sbjct: 503 -----CTIIDHSSNPGQ-DEINADVCGQDLAEINNSS-RKEEKSNVASQEWQRIQKLMQN 555
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
SIPLCKGHKEPC+ARVVKK G FGRRF+ CARAEGPASNPEANCGYFKWA SKSK K
Sbjct: 556 SIPLCKGHKEPCIARVVKKQGANFGRRFYTCARAEGPASNPEANCGYFKWATSKSKNK 613
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/458 (50%), Positives = 298/458 (65%), Gaps = 40/458 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++EF F + RWE LL QGR++FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+
Sbjct: 164 RIEFKHRFYDILERRWECLLRQGRKVFVVGDLNIAPFAVDRCEAGPDFEKNEFRKWFRSL 223
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GGSF DVFRSKHPER++A+TCW S+TGAEQFNYG+RIDHIL AG CLHQ D Q H
Sbjct: 224 LVERGGSFSDVFRSKHPERKDAFTCWSSSTGAEQFNYGSRIDHILVAGSCLHQDEDKQGH 283
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ CH+NEC+IL +YKR+K N + RWKGG+ T+L+GSDH PV+ ++P+IP+HST
Sbjct: 284 SFLACHINECEILTEYKRFKNENMAT-RWKGGLGTKLKGSDHVPVFTSFDDLPDIPEHST 342
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
P LASRYLP+I G QQTLVSV MK+ ++ K+ + S S ++SN++ D S
Sbjct: 343 PPLASRYLPMIYGFQQTLVSVFMKKRANEEAKAIEVSCSSSSQSNASSSCGDISTG---P 399
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFT--KTIENCRDSANVASHSTITQGSSNHISPFHV 332
L N GI CS N ES FT +T+ + N ++ G + +IS
Sbjct: 400 LRNCVSMGISLEKSCSFEN-ESTCAFTEAETVASTGSIDNTCDGIRVSSGRAVNISR--- 455
Query: 333 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN---NSVTDTSLSQEEVP 389
D RKKA+K Q QLSLKSFF S V + ++S + S + + S+T+ ++S +E
Sbjct: 456 DGDRKKARKIQSSQLSLKSFFTTNSKVKNGRDSSSSYVSSSPSSQAESITEPNVSSKEDG 515
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
E P T + +QD+ K++N+ AL+EW+RIQ L
Sbjct: 516 E--------PTTS----------------TQEQDQSSSSA---KQKNDAALMEWQRIQNL 548
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
M+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 549 MQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana]
gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana]
Length = 610
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/453 (50%), Positives = 286/453 (63%), Gaps = 30/453 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++EF F + RWE LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+
Sbjct: 164 RIEFKHRFYGVLERRWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSL 223
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H
Sbjct: 224 LVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGH 283
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ CHV ECDIL +YKR+K N P+ RWKGG+ T+ +GSDH PV++ ++P+IP+HST
Sbjct: 284 SFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHST 342
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
P LASRYLP+I G QQTLVSV KR ++ K+ + S S +SN++ D S
Sbjct: 343 PPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---P 399
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
L N GI CS N+ + G E + ++ + S + SS D
Sbjct: 400 LRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDG 457
Query: 335 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 394
RKKA+K Q QLSLKSFF S V N++ D+S + +S + + P
Sbjct: 458 DRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGK 512
Query: 395 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
+ P T S E SS K++N+ AL+EW+RIQ LM+ SI
Sbjct: 513 EDSEPTT----STQEQDQTGSSA---------------KQKNDAALMEWQRIQNLMQNSI 553
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>gi|22329202|ref|NP_195329.2| endonuclease 2 [Arabidopsis thaliana]
gi|17064948|gb|AAL32628.1| putative protein [Arabidopsis thaliana]
gi|20259962|gb|AAM13328.1| putative protein [Arabidopsis thaliana]
gi|332661206|gb|AEE86606.1| endonuclease 2 [Arabidopsis thaliana]
Length = 408
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/438 (50%), Positives = 279/438 (63%), Gaps = 30/438 (6%)
Query: 73 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P+ RWKGG+ T+ +
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFK 119
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S
Sbjct: 120 GSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSC 179
Query: 253 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
S +SN++ D S L N GI CS N+ + G E + +
Sbjct: 180 SSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGS 234
Query: 313 VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 372
+ + S + SS D RKKA+K Q QLSLKSFF S V N++ D+S
Sbjct: 235 IDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSS 289
Query: 373 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 432
+ +S + + P + P T S E SS
Sbjct: 290 SYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA--------------- 330
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+SN
Sbjct: 331 KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSN 390
Query: 493 PEANCGYFKWAFSKSKQK 510
PEANCGYFKWA SK + K
Sbjct: 391 PEANCGYFKWASSKFRDK 408
>gi|170665738|gb|ACB29408.1| endonuclease [Arabidopsis thaliana]
Length = 408
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 275/441 (62%), Gaps = 36/441 (8%)
Query: 73 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR N P+ RWKGG+ T+L+
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRXXNENMPT-RWKGGLVTKLK 119
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV++ ++P+IP+HST L SRYLP+I G QQTLVSV KR ++ K + S
Sbjct: 120 GSDHVPVFISFDDLPDIPEHSTXPLXSRYLPMIYGFQQTLVSVFKKRRANEEAKVIEVSC 179
Query: 253 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
S ++SN++ D S L N GI CS N E T + A
Sbjct: 180 SSSSQSNASSICGDISTG---PLRNCGSMGISLEKSCSFEN-----ESTSVVTEAETVAT 231
Query: 313 VASHSTITQG-SSNHISPFHVDR--ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD 369
S ++ G + + ++ R RKKA+K Q QLSLKSFF S V N++ D
Sbjct: 232 TGSIDNLSDGIRAPSVRAVNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVED 286
Query: 370 TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKR 429
+S + +S + + P + P T S E SS
Sbjct: 287 SSSSYVSSSPSSQVESITEPNVSRKDDSDPTT----STQEQDQTGSSA------------ 330
Query: 430 FLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP
Sbjct: 331 ---KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGP 387
Query: 490 ASNPEANCGYFKWAFSKSKQK 510
+ NPEANCGYFKWA SK + K
Sbjct: 388 SCNPEANCGYFKWASSKFRDK 408
>gi|227202652|dbj|BAH56799.1| AT4G36050 [Arabidopsis thaliana]
Length = 409
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 204/415 (49%), Positives = 259/415 (62%), Gaps = 30/415 (7%)
Query: 73 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P+ RWKGG+ T+ +
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFK 119
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S
Sbjct: 120 GSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSC 179
Query: 253 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
S +SN++ D S L N GI CS N+ + G E + +
Sbjct: 180 SSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGS 234
Query: 313 VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 372
+ + S + SS D RKKA+K Q QLSLKSFF S V N++ D+S
Sbjct: 235 IDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSS 289
Query: 373 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 432
+ +S + + P + P T S E SS
Sbjct: 290 SYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA--------------- 330
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 331 KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 385
>gi|242049990|ref|XP_002462739.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
gi|241926116|gb|EER99260.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
Length = 618
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 210/505 (41%), Positives = 288/505 (57%), Gaps = 54/505 (10%)
Query: 19 ILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 78
+LF +E + ++ F L F + RWE LL G+R+FVVGDLNIAPA+IDRCDA
Sbjct: 153 VLFNIYGPAVEEDDKERVRFKLLFYKILQKRWEHLLALGKRVFVVGDLNIAPASIDRCDA 212
Query: 79 GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
P F K FR+W RSML E GG FFD FRSKHPER AYTC+ GAE++NYG+RIDHI
Sbjct: 213 PPGFEKQMFRVWMRSMLREHGGPFFDAFRSKHPERTGAYTCFNQKIGAEEYNYGSRIDHI 272
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSY-RWKGGMSTRLEGSDHA 197
L +G CLH ++ HN CHV EC+I+ +KR GN+ + +WKGG S +LEGSDH
Sbjct: 273 LISGSCLHHCDSVEYHNIFCCHVEECEIMNHFKR---GNSENLSKWKGGRSNKLEGSDHI 329
Query: 198 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF--SGSLP 255
PVY+ L E+PE+P H+ P A+RYLP +RG QQ++VS L K ++ + + SG +
Sbjct: 330 PVYILLKEIPELPVHNIPPSAARYLPEVRGRQQSIVSFLDKGKIYELQNAANLIQSGDIV 389
Query: 256 AESNSTGDTEDCSENVDRSLNNYCDSGILQGV--YCSSSNQESEGEFTKTIENCRDSANV 313
S CS+N++ G+ G+ + N S ++ + +
Sbjct: 390 GHSY-------CSDNMEN--RTIAKEGLTTGITQFAKGGNLPSLMRKGTDLDQLTNECII 440
Query: 314 A-SHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 371
SHS+ SS P +KK K + Q ++KSFF + S
Sbjct: 441 GISHSSQRASLSSTKFVP------KKKIKSNLSSQPTIKSFFQRPG-------------S 481
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC-----SVHELHGVNSSVCSHDQDEKK 426
VN S + ++L + K+ +T+ +C S+HE +S + DQD
Sbjct: 482 KTVNASTSTSTLVTP--------AEKVDLTNQTCVPNDDSLHENMQCTTSA-AEDQDNTN 532
Query: 427 GKR-FLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
L +++N A LEW+RIQQ M+ ++P CKGH+EPC+ R VKK GP GR F+VCAR
Sbjct: 533 ASSCSLSADKSNGAALEWQRIQQKMKMTLPRCKGHREPCIPRSVKK-GPNIGRLFYVCAR 591
Query: 486 AEGPASNPEANCGYFKWAFSKSKQK 510
A+GPASNPEANCG+F+WA KSK+K
Sbjct: 592 AQGPASNPEANCGHFQWAPGKSKEK 616
>gi|3036809|emb|CAA18499.1| putative protein [Arabidopsis thaliana]
gi|7270557|emb|CAB81514.1| putative protein [Arabidopsis thaliana]
Length = 641
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 204/453 (45%), Positives = 262/453 (57%), Gaps = 57/453 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++EF F + RWE LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNE
Sbjct: 164 RIEFKHRFYGVLERRWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNE-------- 215
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H
Sbjct: 216 -------------------KDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGH 256
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ CHV ECDIL +YKR+K N P+ RWKGG+ T+ +GSDH PV++ ++P+IP+HST
Sbjct: 257 SFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHST 315
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
P LASRYLP+I G QQTLVSV KR ++ K+ + S S +SN++ D S
Sbjct: 316 PPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---P 372
Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
L N GI CS N+ + G E + ++ + S + SS D
Sbjct: 373 LRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDG 430
Query: 335 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 394
RKKA+K Q QLSLKSFF S V N++ D+S + +S + + P
Sbjct: 431 DRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGK 485
Query: 395 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
+ P T S E SS K++N+ AL+EW+RIQ LM+ SI
Sbjct: 486 EDSEPTT----STQEQDQTGSSA---------------KQKNDAALMEWQRIQNLMQNSI 526
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 527 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 559
>gi|357159663|ref|XP_003578519.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Brachypodium distachyon]
Length = 624
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 277/480 (57%), Gaps = 34/480 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + RW+FLL G+R+FVVGD+NIAP +IDRCDA P F K FR W RSM
Sbjct: 169 RVRFKLLFYKILQKRWDFLLALGKRVFVVGDMNIAPGSIDRCDAPPGFEKQMFREWLRSM 228
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L E+GG FFD FRSKHPER AYTC+ GAE++NYG+RIDHIL +G C H + ++ H
Sbjct: 229 LRENGGPFFDAFRSKHPERVGAYTCFNQKVGAEEYNYGSRIDHILISGACFHHCNSMEDH 288
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+ CHV +C+I+ ++R N +WKGG S +LEGSDH PVY+ L +PE+P H+T
Sbjct: 289 SVFHCHVEDCEIMNHFRRGDSENIS--KWKGGRSIKLEGSDHIPVYIILNGIPEVPVHNT 346
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKRE--VAKQGKSCKFSGSLPAESNSTGDTEDCS---E 269
PS A+RYLP IRG QQT+VS L+K + + S ES+ + D E+ S E
Sbjct: 347 PSTAARYLPEIRGRQQTIVSFLLKGKNYELEDATGSNMSKDRIDESSCSDDLENKSISKE 406
Query: 270 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN-VASHSTITQGSSNHIS 328
+ ++ + G L + C N + + + ++ +A S S N +
Sbjct: 407 ELPTAITEFSKGGNLPSLTCKRRNLDHWVNEGSSGNSNNNNPTLLAPQSQKASFSGNKFT 466
Query: 329 PFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 388
+ KK K + Q ++KSFF + + D ++NN V+ S + V
Sbjct: 467 ------SNKKNKHNLSSQPTIKSFFRQPETKTGD---------ADINNPVS----SVDTV 507
Query: 389 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 448
P+ + P D S+ E H ++ DQD ++ NVA LEW+RIQ
Sbjct: 508 PDMDEL--RSPKDD---SLLE-HIHCTAAADEDQDNSDIPCSQSTDKCNVATLEWQRIQL 561
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 508
M+T++PLCKGH+EPC+ R VKK G GR F+VCARA+GP+SNPEANCG+F+WA KSK
Sbjct: 562 RMKTTLPLCKGHREPCIPRSVKK-GSNIGRLFYVCARAQGPSSNPEANCGHFQWASVKSK 620
>gi|414886484|tpg|DAA62498.1| TPA: hypothetical protein ZEAMMB73_437105 [Zea mays]
Length = 621
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 195/482 (40%), Positives = 274/482 (56%), Gaps = 56/482 (11%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + RWE LL G+R+FVVGDLNIAPA+IDRCDA P F K FR W RSM
Sbjct: 169 RVRFKLLFYKILQKRWERLLALGKRVFVVGDLNIAPASIDRCDAAPGFEKQMFREWLRSM 228
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L E GG FFD FRSKHPER AYTC+ GAE++NYG+RIDHIL +G CLH+ ++ H
Sbjct: 229 LREHGGPFFDAFRSKHPERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHRCDSVEDH 288
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSY-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 213
+ CHV EC+I+ +KR GN+ + +WKGG S++LEGSDH PVY+ L E+PE+P H+
Sbjct: 289 SIFCCHVEECEIMNHFKR---GNSENLSKWKGGRSSKLEGSDHIPVYILLKEIPELPVHN 345
Query: 214 TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDR 273
P A+RYLP IRG QQ++VS L K ++ + + + ++ D
Sbjct: 346 IPPSAARYLPEIRGRQQSIVSFLDKGKIYE-----------------LQNAANLIQSEDT 388
Query: 274 SLNNYCDSGILQGVYCSSSNQESEGEFTK-----------TIENCRDSANVASHSTITQG 322
L++YC G+ + EF K T N + + S ++Q
Sbjct: 389 VLDSYCSDGLENTILAKKGLATGITEFAKGGNLPSLMCKGTDLNQWINEGLMGISHVSQK 448
Query: 323 SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 382
S + F +KK K++ Q ++KSFF + + + + + S T +
Sbjct: 449 KSLSSTKF---VPQKKIKRNLSSQPTIKSFFQRPGSKTVNASTSTLVTPAETLDLTNQAC 505
Query: 383 LSQ-EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 441
+S + +PE+ + T + V + ++S CS L +++N A L
Sbjct: 506 VSNGDTLPEN------MQCTTSAAKVQD--NTDASSCS-----------LSTDKSNAAAL 546
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
EW+RIQ+ M+ ++P CKGH EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+
Sbjct: 547 EWQRIQKKMKMTLPRCKGHSEPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQ 605
Query: 502 WA 503
WA
Sbjct: 606 WA 607
>gi|218202527|gb|EEC84954.1| hypothetical protein OsI_32178 [Oryza sativa Indica Group]
Length = 619
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 262/485 (54%), Gaps = 45/485 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSM
Sbjct: 169 RVRFKLLFYKILQRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSM 228
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L E GG FFD FRSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H
Sbjct: 229 LREHGGPFFDAFRSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDH 288
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+ CHV EC+I+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+T
Sbjct: 289 SIFPCHVEECEIMDHFRRGNSKNMS--MWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNT 346
Query: 215 PSLASRYLPIIRGVQQTLVSVLMK---------REVAKQGKSCKFSGSLPAESNSTGDTE 265
PS A+RYLP IRG QQ++VS L K + + +SC G ES + E
Sbjct: 347 PSSAARYLPEIRGRQQSIVSFLRKGMIYEHKDAMSMDRADESCCGGG---LESKAIYKEE 403
Query: 266 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 325
++ S N S I + + N+ S G +S N + TQ
Sbjct: 404 PPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSG----------NSHNSTAALLATQSRKA 453
Query: 326 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 385
S + KK K + Q ++KSFF + + D + NS+ +
Sbjct: 454 SFSCSKT-VSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTL 502
Query: 386 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 445
+ E H N C ++ + DQ L ++ N A LEW+R
Sbjct: 503 HGMDELHDPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQR 553
Query: 446 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 505
IQQ M+ ++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA
Sbjct: 554 IQQRMKMTLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATV 612
Query: 506 KSKQK 510
KSK+K
Sbjct: 613 KSKEK 617
>gi|115480379|ref|NP_001063783.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|50726587|dbj|BAD34221.1| AP endonuclease 2-like [Oryza sativa Japonica Group]
gi|113632016|dbj|BAF25697.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|215736944|dbj|BAG95873.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 619
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 194/493 (39%), Positives = 264/493 (53%), Gaps = 61/493 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSM
Sbjct: 169 RVRFKLLFYKILQRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSM 228
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L E GG FFD FRSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H
Sbjct: 229 LREHGGPFFDAFRSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDH 288
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYR-WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 213
+ CHV EC+I+ ++R GN+ + WKGG S++LEGSDH PVY+ L E+PE+P H+
Sbjct: 289 SIFPCHVEECEIMDHFRR---GNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHN 345
Query: 214 TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDR 273
TPS A+RYLP IRG QQ++VS L K + + + ++DR
Sbjct: 346 TPSSAARYLPEIRGRQQSIVSFLRKGMIYEHKDAM---------------------SMDR 384
Query: 274 SLNNYCDSGILQGVYCSSSNQESEGEFTK--------------TIENCRDSANVASHSTI 319
+ + C G+ + +F+K + N S N + +
Sbjct: 385 ADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAA 444
Query: 320 TQGSSNHISPFHVDRA--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 377
+ + + F +A KK K + Q ++KSFF + + D + NS
Sbjct: 445 LLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNS 494
Query: 378 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 437
+ + + E H N C ++ + DQ L ++ N
Sbjct: 495 IVTPPDTLHGMDELHDPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCN 545
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANC 497
A LEW+RIQQ M+ ++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANC
Sbjct: 546 EATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANC 604
Query: 498 GYFKWAFSKSKQK 510
G+F+WA KSK+K
Sbjct: 605 GHFQWATVKSKEK 617
>gi|222641992|gb|EEE70124.1| hypothetical protein OsJ_30144 [Oryza sativa Japonica Group]
Length = 568
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 194/493 (39%), Positives = 264/493 (53%), Gaps = 61/493 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++ F L F + RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSM
Sbjct: 118 RVRFKLLFYKILQRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSM 177
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L E GG FFD FRSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H
Sbjct: 178 LREHGGPFFDAFRSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDH 237
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYR-WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 213
+ CHV EC+I+ ++R GN+ + WKGG S++LEGSDH PVY+ L E+PE+P H+
Sbjct: 238 SIFPCHVEECEIMDHFRR---GNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHN 294
Query: 214 TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDR 273
TPS A+RYLP IRG QQ++VS L K + + + ++DR
Sbjct: 295 TPSSAARYLPEIRGRQQSIVSFLRKGMIYEHKDAM---------------------SMDR 333
Query: 274 SLNNYCDSGILQGVYCSSSNQESEGEFTK--------------TIENCRDSANVASHSTI 319
+ + C G+ + +F+K + N S N + +
Sbjct: 334 ADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAA 393
Query: 320 TQGSSNHISPFHVDRA--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 377
+ + + F +A KK K + Q ++KSFF + + D + NS
Sbjct: 394 LLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNS 443
Query: 378 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 437
+ + + E H N C ++ + DQ L ++ N
Sbjct: 444 IVTPPDTLHGMDELHDPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCN 494
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANC 497
A LEW+RIQQ M+ ++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANC
Sbjct: 495 EATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANC 553
Query: 498 GYFKWAFSKSKQK 510
G+F+WA KSK+K
Sbjct: 554 GHFQWATVKSKEK 566
>gi|297735011|emb|CBI17373.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/227 (66%), Positives = 181/227 (79%), Gaps = 2/227 (0%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F +F + RWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSM
Sbjct: 166 RIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSM 225
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
LVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ
Sbjct: 226 LVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDR 285
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
FVTCHV ECDIL +KRWKPGN P RWKGG S +LEGSDHAPV+M L ++P++ QHST
Sbjct: 286 IFVTCHVKECDILTQFKRWKPGNKP--RWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHST 343
Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 261
PSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ +T
Sbjct: 344 PSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENITT 390
>gi|168059759|ref|XP_001781868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666675|gb|EDQ53323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 239/477 (50%), Gaps = 66/477 (13%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAKNEFRIWFRSM 94
EF L F ++ RWE LL GRR+ VGD NI+P ID C D+ PDF K+ R WFRS
Sbjct: 165 EFKLRFYRALQNRWEGLLKNGRRVIAVGDFNISPFPIDSCHSDSNPDFDKSSIRQWFRSQ 224
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD---- 150
L +GG F DVFR HP R AYT W +G+E+FNYGTR+D I+ AG C HQ
Sbjct: 225 LRANGGPFVDVFREIHPIREGAYTFWNQMSGSEEFNYGTRLDLIIAAGGCFHQVRSEESN 284
Query: 151 -----LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+SH+F TC V +CDIL+++KR+K + P R G + +L+GSDH PVY+ L
Sbjct: 285 SLLKAEESHHFGTCEVEDCDILLEFKRFKADSVP--RRGGEKTQKLDGSDHVPVYVQLRP 342
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 265
P + QH P LA+R++P IRG QQ++ S L KR SC + A+ +
Sbjct: 343 QPPLEQHDVPPLAARFMPEIRGRQQSIASFLQKR-------SCSLIMDIEAQKETKPRLS 395
Query: 266 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 325
L C N +F K+ + + S + T+G N
Sbjct: 396 ------------------LPTATCVRKNPPKVTKFLKSQNSKQKSLHSFFMLPTTKGKEN 437
Query: 326 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 385
+ A + + L + SL+ N HD ++ +T+ +S +SL Q
Sbjct: 438 TEAANAFKLAFQDSDSETLLKPSLEQSQTFVINSPHDGDSQ--ETNAEPTDSSNTSSLKQ 495
Query: 386 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 445
+ ES +H +P +V + + +EK A +EW+R
Sbjct: 496 DCTCESQNH---VP------------EAVETVETAETNEKLS-----------AKIEWQR 529
Query: 446 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
IQ+ M +P+C GH EPC V+KKPGP GR+F CARA+GP+SNPEA C YFKW
Sbjct: 530 IQKTMMNRVPMCSGHNEPCATYVMKKPGPNHGRKFHCCARAQGPSSNPEAKCKYFKW 586
>gi|356561152|ref|XP_003548849.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase 2-like [Glycine max]
Length = 566
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/282 (49%), Positives = 190/282 (67%), Gaps = 8/282 (2%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+++F F + RW LL QGRRIFVV DLNIAP AIDRCD GPDF KNE WF+SM
Sbjct: 163 RIQFKQIFYRILQKRWGSLLHQGRRIFVVVDLNIAPFAIDRCDIGPDFEKNEXVXWFKSM 222
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L+E+ G F DVFR+KHP+RREAYT W NTGAE FN+G+RIDHIL +G C H+ DLQ H
Sbjct: 223 LIENWGQFSDVFRAKHPDRREAYTSWSQNTGAEVFNFGSRIDHILFSGSCXHE-LDLQCH 281
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
+F+ C V ECDIL YKR KP + RWKGG S +LEGSDHAPV+M L E+P++ HST
Sbjct: 282 SFIRCLVKECDILTQYKRCKP--ESTLRWKGGRSVKLEGSDHAPVFMSLHEIPDVSLHST 339
Query: 215 PSLASRYLPIIRGVQQTL----VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 270
P L++RY+P++ G+QQTL +SVLMKR+V+K+ KS + + A +ST + ++
Sbjct: 340 PPLSARYVPMVHGIQQTLATKHLSVLMKRQVSKKMKSFEMAQEDIA-MDSTCERKEPVNR 398
Query: 271 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
+++ ++ L+ + S+N ++ ++C D +N
Sbjct: 399 AEKAKSSQWSQLSLRSFFQKSANLDNGSSVKVVNDSCTDYSN 440
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 332 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 391
V+RA +KAK SQ QLSL+SFF K +N+ DN S VN+S TD S +Q E +
Sbjct: 396 VNRA-EKAKSSQWSQLSLRSFFQKSANL---DNGSSVKV---VNDSCTDYSNNQAEPSQP 448
Query: 392 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 451
+ P S + +G+++ C D G +E +NVA LEW+RIQQLM+
Sbjct: 449 SPRLQETPTVFAHSSSPKKYGLDTDTCDQDLAGPNGSS-TKEEMSNVASLEWQRIQQLMQ 507
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
SIP+CKG+KEPC+ARVVKK GP FGRRF+VCA AEGPASN EANCGYFKWA SKSK K
Sbjct: 508 NSIPICKGYKEPCIARVVKKQGPNFGRRFYVCAHAEGPASNLEANCGYFKWASSKSKNK 566
>gi|302820698|ref|XP_002992015.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
gi|300140137|gb|EFJ06864.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
Length = 558
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 96
+F L+F + R E +L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV
Sbjct: 168 DFKLNFYQVLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLV 227
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH- 154
GG+F D FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH
Sbjct: 228 SEGGAFSDAFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHG 287
Query: 155 -----NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
F C + CDIL+++KR K P RW GG S +L+GSDHAPV + L +P I
Sbjct: 288 NSSCDGFAKCGTDMCDILLEFKRAKLDTLP--RWSGGRSLKLDGSDHAPVILQLKHLPSI 345
Query: 210 PQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
P H P LA+R++P +RG QQ++VS+ K
Sbjct: 346 PPHEAPQLAARFMPELRGRQQSIVSIFQK 374
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 340 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 397
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N +
Sbjct: 404 KLQRLSQSRLTRFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNCSE 459
Query: 398 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 457
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 458 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|302762180|ref|XP_002964512.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
gi|300168241|gb|EFJ34845.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
Length = 540
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 96
+F L+F + R E +L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV
Sbjct: 168 DFKLNFYKVLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLV 227
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSHN 155
GG+F D FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH+
Sbjct: 228 SEGGAFSDAFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHD 287
Query: 156 ------FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
F C + CDIL+++KR K P RW GG S +L+GSDHAPV + L +P I
Sbjct: 288 NSSCDGFAKCGTDMCDILLEFKRAKLDTLP--RWSGGRSLKLDGSDHAPVILQLKHLPSI 345
Query: 210 PQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
P H P LA+R++P +RG QQ+++S+ K
Sbjct: 346 PPHEAPQLAARFMPELRGRQQSILSIFQK 374
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 340 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 397
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N K
Sbjct: 404 KLQRLSQSRLTGFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNLSK 459
Query: 398 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 457
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 458 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|224134090|ref|XP_002327753.1| predicted protein [Populus trichocarpa]
gi|222836838|gb|EEE75231.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 147/388 (37%), Positives = 187/388 (48%), Gaps = 101/388 (26%)
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
+E FF + + + + CW +TGAEQFN+G+RIDHILCAGPCLHQ+HDLQ +N
Sbjct: 77 IEFKMKFFKILQ------KRSMQCWSLSTGAEQFNFGSRIDHILCAGPCLHQEHDLQGNN 130
Query: 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP 215
++CHV ECDIL +YKRWK G+ + RWKGG RLEGSDHAPVY L E+ +IP HST
Sbjct: 131 SLSCHVKECDILTEYKRWKLGD--TSRWKGGWGIRLEGSDHAPVYTSLEEIHDIPTHSTL 188
Query: 216 SLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 275
L+S R ++ C PA S D V +
Sbjct: 189 PLSS-------------------RYLSANDSWC------PANSWLLHDFNPAGYQVHLQM 223
Query: 276 NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 335
+L G + NQ D N + I Q + P +
Sbjct: 224 EM-----LLYGREFTDENQ--------------DRPNT---TVILQSQHTKLVP--AEGT 259
Query: 336 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 395
+KKA+KS QLSL+SFF + N+S NS T TS ++ P S +HS
Sbjct: 260 QKKARKSWCFQLSLRSFFQRSPNLSTVAENSSTKTS------------PRQAEPNSRNHS 307
Query: 396 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 455
+ SH D+K K +IQQLM+ SIP
Sbjct: 308 SD---------------------SHAMDDKSSSPNYCK-----------KIQQLMQNSIP 335
Query: 456 LCKGHKEPCVARVVKKPGPTFGRRFFVC 483
+CKGHKEPCVAR+VKKPGPT GRRFF C
Sbjct: 336 VCKGHKEPCVARIVKKPGPTLGRRFFAC 363
>gi|260798967|ref|XP_002594471.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
gi|229279705|gb|EEN50482.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
Length = 561
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/520 (28%), Positives = 209/520 (40%), Gaps = 109/520 (20%)
Query: 10 DGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIA 69
DG + VI Y C + + +F L F + R + LL G + V+GD+N +
Sbjct: 132 DGKECSLAVINVY--CPRADPEKEERKDFKLRFYRLLQTRAQALLQAGSHVIVLGDVNTS 189
Query: 70 PAAIDRCDAGPD----FAKNEFRIWFRSMLVES---------------GGSFFDVFRSKH 110
ID CD PD F++N R W L++ GG F D FR H
Sbjct: 190 HKPIDHCD--PDDIEYFSENPGRKWLDQFLLDPHQTGDSGSSESEKGPGGYFVDTFRFFH 247
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
P +R A+TCW + TGA Q NYGTRID+I L+Q D C I+ +
Sbjct: 248 PTQRSAFTCWSTVTGARQTNYGTRIDYIFANRALLNQFQD-------------CTIMPE- 293
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQ 230
+EGSDH PV L + + P+L S+Y+P G QQ
Sbjct: 294 --------------------VEGSDHCPVRGELACIV-VASGKCPALCSKYMPEFVGKQQ 332
Query: 231 TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 290
L + K K+G++ + S + S+S G ++ SE CS
Sbjct: 333 KLSAFFTK---VKKGENGEEKSSQDSVSSSQGTSDGHSE------------------ICS 371
Query: 291 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 350
+ E + + A H R KK K Q Q +L
Sbjct: 372 QQSSSQSWENHSSESEGSSIISTAKHG----------------RGMKKQKTDQGKQGTLL 415
Query: 351 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 410
SFF +++ + D+ + N D + +S H SN D S
Sbjct: 416 SFFGRKTGIEADEKRKANTLDVTQENPERDVACENVVSSQSVHPSNSSVDVDDSVRKESK 475
Query: 411 HGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVK 470
H N K + ++N A W+ + + CKGH+EPCV R VK
Sbjct: 476 HAEND----------KSTVEMKPKQNQAAF--WKTVLKGPPPPP-PCKGHREPCVLRTVK 522
Query: 471 KPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
K GP FG++F+VCAR +G +SNP A C +F+W S+ K K
Sbjct: 523 KQGPNFGKQFYVCARPQGHSSNPAARCDHFQWV-SRGKDK 561
>gi|302820700|ref|XP_002992016.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
gi|300140138|gb|EFJ06865.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
Length = 379
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 102/174 (58%), Gaps = 24/174 (13%)
Query: 49 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF---FDV 105
R E +L QGRRI +VGDLNI+P I+ CD GP+F N R WFRS+LV F F
Sbjct: 219 RLESILKQGRRIIIVGDLNISPYPINSCDPGPEFDTNPSRQWFRSLLVSEVVRFQTRFAC 278
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
F K EAYTCW +GAE+FNYG+RIDH+L AGPC H CD
Sbjct: 279 FILK-----EAYTCWSQASGAEEFNYGSRIDHVLIAGPC-------AGHYM-------CD 319
Query: 166 ILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 219
IL+++KR K P RW GG S +L+GSDHAPV + +P IP H P LA+
Sbjct: 320 ILLEFKRAKLDTLP--RWSGGRSLKLDGSDHAPVILQFKHLPSIPPHEAPQLAA 371
>gi|291239611|ref|XP_002739716.1| PREDICTED: apurinic/apyrimidinic endonuclease 2-like [Saccoglossus
kowalevskii]
Length = 541
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 212/524 (40%), Gaps = 155/524 (29%)
Query: 18 VILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD 77
V++ C E + +L F L F S + R E LL GR + VVGD+N++ AID CD
Sbjct: 138 VVIINVYCPRCEPDDQERLNFKLRFYSLLQTRCEALLSAGRHVIVVGDMNVSHKAIDHCD 197
Query: 78 AGPDFAKNEFRIWFRSMLV---------------------------------ESGGSFFD 104
A + K R W L +S GSF D
Sbjct: 198 AAVNPTKP--RQWMDQFLCKLSDMGEIIDKTSEVNHLIGAVGISPEKVSNYSQSTGSFVD 255
Query: 105 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 164
FR HP+++EA+TCW + TGA Q NYGTRID+IL + ++ V
Sbjct: 256 TFRHFHPQQQEAFTCWRTTTGARQLNYGTRIDYILAS---------------MSLQVELL 300
Query: 165 DILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 224
D +I +EGSDH PV + L E + P+L+++++P
Sbjct: 301 DSII-------------------MPNVEGSDHCPVKVTLRCTCETSK-KIPTLSTKHMPE 340
Query: 225 IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 284
G KQ K F ES+ T + DS I
Sbjct: 341 FAG---------------KQQKLSGFFTKAAIESSHINTTPEI------------DSKI- 372
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
S + T ENC SA+ T + SN A KK K +
Sbjct: 373 -----------SHPKLTNHYENC--SASNLLKRTSSANESN---------ATKKQKTTNR 410
Query: 345 GQL--SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
++ ++ FF K+S D+ SI S+++V IP+ +
Sbjct: 411 PKMHGNISDFFQKKSVSKTSDHPSIQ---------------SKDQV---------IPL-E 445
Query: 403 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 462
+ SV G ++S H + G + E+ VA +W+ + + PLC+GHKE
Sbjct: 446 CAISVAPRAGEDAS---HSIPMQSG---MKDEKKKVAA-KWKNMLSGPKPP-PLCRGHKE 497
Query: 463 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
PCV R V+K G GR+F+VC + EGP SNP A C +F+WA K
Sbjct: 498 PCVLRTVRKTGLNQGRQFYVCTKPEGPKSNPNARCDFFQWADKK 541
>gi|432866619|ref|XP_004070893.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oryzias latipes]
Length = 553
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 186/486 (38%), Gaps = 112/486 (23%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSM 94
+F L F + +R E +L G + V+GD+N + ID CD +F N R W
Sbjct: 155 QFKLQFYKLLQHRAEAVLKAGSHVIVLGDVNTSHRPIDHCDPCETNEFEDNPGRKWLNEF 214
Query: 95 LVE-----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
L + G F D FR HP R A+TCW + TGA Q NYGTRID+
Sbjct: 215 LHNGSPEDVLDEDPKQAPELNSGRFVDTFRLFHPTRTNAFTCWSTLTGARQTNYGTRIDY 274
Query: 138 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHA 197
I F C + E + + +EGSDH
Sbjct: 275 I-----------------FADCKLAEEQFVAT----------------DIMPEVEGSDHC 301
Query: 198 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 257
PV+ L +P P L +RYLP G QQ L L+K V ++ + LP
Sbjct: 302 PVWGKLS-CSVLPSSKPPPLCTRYLPEFVGKQQKLSRFLIK--VDQKSSQPEQKSVLPG- 357
Query: 258 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 317
+ + ++ +ENV+ S N +L A+ S
Sbjct: 358 ---SQEDDERTENVNPSGANSVKKRLL-----------------------------AADS 385
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 377
I +G + K S Q +L SFF + D T TS +
Sbjct: 386 VIPKG-----------KKTKMQSSSSKPQGNLLSFFKPKVANLKDQEKETTFTSSQSDQK 434
Query: 378 VTDTSLSQEEVPESHHHSNKIP-VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 436
+ S P + + + + C+V + ++V K
Sbjct: 435 AKASRDSSTVTPAAAEETERASDASSQRCTVLDADKQKNTVQPTVAQSK----------- 483
Query: 437 NVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN 496
+L W+ + P CK H+EPCV R VKK GP G++FFVCAR +G ASNPEA
Sbjct: 484 GASLGFWKSVLH-GPPPAPSCKVHREPCVLRTVKKEGPNVGKQFFVCARPQGHASNPEAR 542
Query: 497 CGYFKW 502
C +F+W
Sbjct: 543 CNFFEW 548
>gi|302761446|ref|XP_002964145.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
gi|300167874|gb|EFJ34478.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
Length = 589
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 86/137 (62%), Gaps = 7/137 (5%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+L +GRRI +VG LNI+P ID CD GP F + R WFRS+LV GG+F D FR HPE
Sbjct: 269 ILKRGRRIIIVGHLNISPYPIDSCDPGPKFDTDPSRQWFRSLLVSEGGAFSDSFRVFHPE 328
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFVTCHVNECD 165
EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F C + CD
Sbjct: 329 IAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQCPDGSHENSSCDGFAECGTDMCD 388
Query: 166 ILIDYKRWKPGNAPSYR 182
IL+++KR K P R
Sbjct: 389 ILLEFKRAKLDTLPRSR 405
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
W R++ LM ++ CKGH E CV R VKK GP GR F+VC RA+GPAS
Sbjct: 535 WERLKSLMSRNLLSCKGHGETCVVRTVKKAGPNLGRGFYVCTRAKGPAST 584
>gi|410900065|ref|XP_003963517.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Takifugu rubripes]
Length = 558
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/490 (27%), Positives = 190/490 (38%), Gaps = 114/490 (23%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR-- 92
+F L F + R E +L G + V+GD+N + ID CD DF +N R W
Sbjct: 154 QFKLHFYQLLQRRAEAILKDGSHVIVLGDINTSHQRIDHCDPSDKDDFDENPGRKWLNVF 213
Query: 93 --------------------SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
S L SGG F D FR HP R A+TCW + TGA Q NYG
Sbjct: 214 LHGVGQEEEAVEAAEFSEVISTLPGSGGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYG 273
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
TRID+I +H L FV DI+ + +E
Sbjct: 274 TRIDYIFA------DRH-LAKGQFVA-----ADIMPE---------------------VE 300
Query: 193 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GSDH PV+ L +P P L +RYLP G QQ L ++ +
Sbjct: 301 GSDHCPVWGQL-SCSLLPSTKPPPLCTRYLPEFAGKQQKLSHFFVRADQ---------KS 350
Query: 253 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
SLP +S + L G S +E + +
Sbjct: 351 SLPEQSKT-----------------------LPG---SQEEEEKRENLSPVADKTGQKRL 384
Query: 313 VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 372
+ S S + +G + K K + Q SL SFF + V++ + T
Sbjct: 385 LKSDSALPKG-----------KKTKSVKTASNPQGSLLSFF--KPKVTNVIASGDTPVGQ 431
Query: 373 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 432
N D +++ ++ S V+ + EL S CS ++ ++
Sbjct: 432 RENRQKLD-AVAPSQI------SRTADVSATAGGEAELRCNGSQPCSSTEENEQRTPTPQ 484
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
+ + + + W+ + P CK H EPC R VKK GP GR+FFVCAR +G SN
Sbjct: 485 AAKKSSSSVFWKSVLH-GPPPPPSCKVHGEPCALRTVKKEGPNMGRQFFVCARPQGHVSN 543
Query: 493 PEANCGYFKW 502
P+A C +F+W
Sbjct: 544 PDARCNFFEW 553
>gi|297735010|emb|CBI17372.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
+++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASN
Sbjct: 34 RDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASN 93
Query: 493 PEANCGYFKWAFSKSKQK 510
PE NCGYFKWA SKS+ +
Sbjct: 94 PETNCGYFKWAASKSRHR 111
>gi|348503254|ref|XP_003439180.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oreochromis niloticus]
Length = 563
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 193/492 (39%), Gaps = 115/492 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML 95
F L F + + R E +L G + V+GD+N + ID CD DF +N R W L
Sbjct: 155 FKLQFYNLLQSRAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFL 214
Query: 96 VES----------------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
GG F D FR HP R A+TCW + TGA Q NYGT
Sbjct: 215 HRGKQEEESDEEEHDKESEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGT 274
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+I C L FV DI+ + +EG
Sbjct: 275 RIDYIFAD--C-----QLAKEQFVG-----ADIMPE---------------------VEG 301
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 253
SDH PV+ L I P +RYLP G QQ L L+K V ++ + +
Sbjct: 302 SDHCPVWGQL-SCSLISSPKPPPFCTRYLPEFAGKQQKLSRFLVK--VDQKSAQSEQKNA 358
Query: 254 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE-NCRDSAN 312
LP E+ + + +++ S +S + +G+ TKT+ + + N
Sbjct: 359 LPGSQEEEERRENLNPSGAANISGKKRS-------LTSDSVAPKGKKTKTVNASSKPQGN 411
Query: 313 -VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 371
+A + T + +P ++D A K ++ S+TDT
Sbjct: 412 LLAFFKSKTTNINQCENPLNLDEAAKPPITEEV--------------------FSVTDTK 451
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 431
++D Q ++ H N T +S + D KKG
Sbjct: 452 SEGPELISDNLSQQCSTAKTDQHLN----TKHSPPQPTV---------RQSDAKKG---- 494
Query: 432 DKERNNVALLEWRRIQQLMETSIPLC-KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
+ + W+ + L P C K H EPCV R VKK GP G++FFVCAR +G A
Sbjct: 495 ------TSSVFWKSV--LHGPPAPPCCKVHGEPCVLRTVKKEGPNMGKQFFVCARPQGHA 546
Query: 491 SNPEANCGYFKW 502
SNPEA C +F W
Sbjct: 547 SNPEARCNFFAW 558
>gi|241745915|ref|XP_002405543.1| ap endonuclease, putative [Ixodes scapularis]
gi|215505857|gb|EEC15351.1| ap endonuclease, putative [Ixodes scapularis]
Length = 507
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 137/497 (27%), Positives = 190/497 (38%), Gaps = 134/497 (26%)
Query: 13 LLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAA 72
L +I VI Y E R Q++ L F + R LL G + ++GDLN +
Sbjct: 134 LKRIAVINVYCPRADPEKPERGQIK--LDFYELLKRRAMTLLRNGLEVIILGDLNTSHRK 191
Query: 73 IDRCDAG--PDFAKNEFRIWFRSMLVESGGS--FFDVFRSKHPERREAYTCWPSNTGAEQ 128
ID CD DF N RIW L S + F D +R HP +A+TCW + GA Q
Sbjct: 192 IDHCDPSDDEDFDSNPGRIWLSQFLENSTTNTCFHDTYRRLHPTTEKAFTCWNTRLGARQ 251
Query: 129 FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMS 188
NYGTRID++LC+ P L + DIL
Sbjct: 252 TNYGTRIDYVLCS-PAL------------VPFLQTADIL--------------------- 277
Query: 189 TRLEGSDHAPV---YMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG 245
+ GSDH PV + C G +P PS+A+++ P G QQ L + L K+
Sbjct: 278 PHVLGSDHCPVEAIFRCDG----VPSPRCPSMATKFWPEFAGRQQRLSAFLSKKP----- 328
Query: 246 KSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 305
GD E+ + Q SEG +
Sbjct: 329 ----------------GDQEEAERD--------------------RRPQSSEG----WED 348
Query: 306 NCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNN 365
+C S + + + S N AR K + Q +L FF
Sbjct: 349 SCAVSVELRNGGPPVKKSKNVP-------ARTTDKSHKTAQSTLNRFF------------ 389
Query: 366 SITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK 425
V+++ TD +S++ SH + + D V VNS E
Sbjct: 390 --------VSSNKTDVGVSKQSSRSSHGQAK---LGDCGLPV-----VNSGTNVSGAPEP 433
Query: 426 KGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
KR +D W+ + + P CKGH E CV R VKKPGP GR+FFVCAR
Sbjct: 434 APKRAVD------VACAWKSLLKGPPVPPP-CKGHGEQCVLRTVKKPGPNLGRQFFVCAR 486
Query: 486 AEGPASNPEANCGYFKW 502
G + + A+C +F+W
Sbjct: 487 PTGKSGDVNASCEFFQW 503
>gi|402910299|ref|XP_003917823.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Papio
anubis]
Length = 518
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/478 (24%), Positives = 177/478 (37%), Gaps = 138/478 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVSLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 265
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE------------------------- 347
Query: 266 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 325
S +L+ +NQ ++ C++ A V
Sbjct: 348 --------------QSPLLEQSALQHNNQ-------TRVQTCQNKAQV------------ 374
Query: 326 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 385
H R R S GQ +LKS+F N + + + ++L
Sbjct: 375 -----HSTRPRPSQAGSGRGQKNLKSYFQPSPNCPQ------ASPDIELPSPPLMSALMT 423
Query: 386 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 445
+ PE + + + S +DEK+ + W+
Sbjct: 424 PKTPEEEAVAKVV--------------KGRAKASEAKDEKEVRTSF-----------WKS 458
Query: 446 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 459 VLA-GPLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|390359970|ref|XP_784420.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Strongylocentrotus purpuratus]
Length = 621
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 214/554 (38%), Gaps = 150/554 (27%)
Query: 9 RDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI 68
+DG L +++I Y G + R F + F + + R E +L G+ + +VGD+N
Sbjct: 156 KDGALGDLVIINVYCPRAGDDNPER--KSFKMRFYNLLQLRAEAMLQAGKSVVIVGDVNA 213
Query: 69 APAAIDRCDAGPDFAKNEF---RIWFRSML--------VESGGS---------------- 101
+ ID CD ++ K E R W L E+ S
Sbjct: 214 SHRRIDHCDPSGNWGKFESHPSRKWLDGFLKDCSCPETAETSPSSQDDLQKSPQEEQELS 273
Query: 102 -----------------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 274 DEERHVHDDSNIDVEDIPSKDNLFVDSFRYFHPKRENAFTCWSTLTGARQTNYGTRIDYI 333
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
+ + + ECDI+ ++ EGSDH P
Sbjct: 334 IV------------NERLCVDELTECDIMPEF---------------------EGSDHCP 360
Query: 199 VYMCL--GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 256
V L G P H + ++ +P + G QQ L + K V+ K ++
Sbjct: 361 VKATLLGGCSPAEQLHP---MCAKLMPEVAGKQQKLSNFFQK--VSPSKKFEMHEKAMSG 415
Query: 257 ESNSTGDTE-DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 315
E+ G + D + +SL V +++G+ TKT N+AS
Sbjct: 416 ENKQGGRSRLDIGKREGQSL-----------VGKPGKRAKTDGKVTKT-------GNIAS 457
Query: 316 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 375
+KKA Q L+ H+ S+ S+ N + S +
Sbjct: 458 F------------------FKKKADAKLRSQTDLE--IHQSSSSSY--NTRLMPNSQRSD 495
Query: 376 NSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQ--DEKKGKRFLDK 433
+ + S Q + + IPV + G + +V Q E + F DK
Sbjct: 496 GDIDNGSDFQNRLKD-------IPVDS------GISGSDDAVSDASQIVKETSQELFEDK 542
Query: 434 ERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
+ L W+ + + S P+CKGH+EPC+ R VKK GP G++FFVC R EG +N
Sbjct: 543 PKAKQQLASAWKNLFKGPPPS-PMCKGHQEPCLLRTVKKAGPNLGKQFFVCKRPEGHKNN 601
Query: 493 PEANCGYFKWAFSK 506
PEA C +F+W K
Sbjct: 602 PEARCNHFEWVSKK 615
>gi|195996619|ref|XP_002108178.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
gi|190588954|gb|EDV28976.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
Length = 527
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 191/482 (39%), Gaps = 121/482 (25%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI-WFRS 93
+L F L F + R E LL G+ + +VGD+N + ID C+ +N W +
Sbjct: 153 RLNFKLKFYELLQERAEALLIAGKHVVIVGDVNTSHKPIDHCEPDIKAMQNSPSCHWLDN 212
Query: 94 MLV------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L+ +G F D FR +P R+EA+TCW + T A + NYGTRID+I+
Sbjct: 213 LLIPLDSEGKVDSSISAGKKFIDSFRYFYPRRKEAFTCWSTVTSARKTNYGTRIDYIIA- 271
Query: 142 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
+ D+++ SY + + +EGSDH P+Y
Sbjct: 272 ---------------------DKDLVV-----------SYFAESQIQPEIEGSDHCPIYA 299
Query: 202 CLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 261
L + P P L ++Y+ Q L L K GK
Sbjct: 300 DL-KFTINPSDKLPWLCTKYMSEFSKKQSKLTEFL------KLGKE-------------- 338
Query: 262 GDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQ 321
S + SE T I +D+ NV + +
Sbjct: 339 ------------------------------STERSEPTNTTRINKMKDT-NVTVDTKGSN 367
Query: 322 GSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDT 381
+ P ++D R K+ ++ L L FF K SN +H N SI ++
Sbjct: 368 QKRDSTCPVNIDVKRSKSSSNKSCNL-LNYFFTKPSN-THKSNTSIIQPTV--------- 416
Query: 382 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 441
++E E+ + D + ++ +N+S ++ +++K+ + + +
Sbjct: 417 ---EKEPLEA--------IKDKKDNNNDSRELNNSQQNNKENKKEDEAAMVANDKSETTK 465
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
W+ I IPLC GHK P V R VKK GP GRRF+VC EG NP A C +F+
Sbjct: 466 AWKSILS-GPPPIPLCSGHKVPSVMRTVKKSGPNQGRRFYVCTLPEGRRGNPNARCNFFQ 524
Query: 502 WA 503
WA
Sbjct: 525 WA 526
>gi|323508160|emb|CBQ68031.1| related to APN2-AP endonuclease, exonuclease III homolog
[Sporisorium reilianum SRZ2]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 147/584 (25%), Positives = 218/584 (37%), Gaps = 139/584 (23%)
Query: 12 VLLQIMVILFYSMC---TGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI 68
VL + +LF C TG E +LE+ +++ + R L+ GR++ +VGD+NI
Sbjct: 140 VLDLGLFVLFNVYCPNETGPE-----RLEYKMTYYQGLAERAHRLIQAGRQVMIVGDMNI 194
Query: 69 APAAIDRCDA-------GPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 120
ID CDA G D F ++ R WF++ L G F DV R HPER++ +TCW
Sbjct: 195 IRDPIDHCDAEQSMKEYGWDHFHQHPARSWFQTFLAPHG-KFHDVGRLYHPERKKMFTCW 253
Query: 121 PSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 178
+ A NYG R+D+ L L + D+Q + + H C I +D
Sbjct: 254 NTLIDARPANYGVRLDYTLVTEGLLDWIKGADIQPDVYGSDH---CPIYVDLH------- 303
Query: 179 PSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL-M 237
R G +L H G +P P+LA+ + G Q+ L S
Sbjct: 304 -DERQIDGKMVKLADLMH-------GGADRLP----PALAACHYDEFSGKQRKLASFFGA 351
Query: 238 KREVAKQGKSCKFSG-SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQES 296
++ KSC +G SL + +T + + N S + D G +Q S++ ES
Sbjct: 352 SKKAVPTTKSCSPAGTSLADQGKTTAEVKSTLSN-GSSTKDGTDGGAIQ-TSTSTAGIES 409
Query: 297 EGEFTK-------------TIENCRDSANVASHSTITQGSSNHISPFHV----------- 332
EG IE +N A +T + + + P
Sbjct: 410 EGSSLADALFSLHSQQEGLNIEMAASQSNAAPATTSSTPAVEPVPPASAPVATTAVSTPS 469
Query: 333 ------------------------------DRARKKAKKSQLGQLSLKSFFHKRS----- 357
D + K S GQ SL+SFF K
Sbjct: 470 PTKAPASQPSPSGRRDSALAKRAPAATKGKDSGKAKNGASLKGQTSLQSFFAKPKSTSST 529
Query: 358 ---------NVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH 408
++S + S VN+SV T + ++P + + D C H
Sbjct: 530 ASSEPTKVMDLSQETGGSKAPPPAPVNDSVAGT-VPNTDIPAASYDETD----DAICDFH 584
Query: 409 ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARV 468
E ++ + ++ R A L W I PLC+ H EPC A
Sbjct: 585 E--ATTTTFPAPPAEQSAADRV-------GASLAWGAI--FSPIPAPLCRSHSEPCRAWT 633
Query: 469 VKKPGPTFGRRFFVCARAEGPA----------SNPEANCGYFKW 502
V KPGP GR+F++C R GP NPE C +F W
Sbjct: 634 VNKPGPNHGRKFWLCNRPVGPGYEKSGRAKGDVNPEFRCNFFLW 677
>gi|358058458|dbj|GAA95421.1| hypothetical protein E5Q_02075 [Mixia osmundae IAM 14324]
Length = 1197
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 135/510 (26%), Positives = 200/510 (39%), Gaps = 86/510 (16%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--------DFAKNE 86
+L F ++F+ + R L+ GR + VVGDLNI ID CD DF +
Sbjct: 165 RLTFKMAFNHLLDERVRQLIKLGREVIVVGDLNICAQTIDHCDPEKRKAEQNLDDFQAHP 224
Query: 87 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R W S + + G D R HP R YT W + A NYGTR+D+IL L
Sbjct: 225 ARAWL-SAFIGASGVMIDSTRFFHPTRTNMYTHWETKINARVTNYGTRLDYILVTPGLLP 283
Query: 147 --QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
+ D+Q+H + H C + ID+ P G L + + P +
Sbjct: 284 WIKAADIQAHVVGSDH---CPVFIDFH-------PEISLNDGTKQSLWEAVN-PGRERVD 332
Query: 205 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR--EVAKQGKSCKFSGSLPA-ESNST 261
VP+ P+ +A+RY G Q L + +K+ E Q ++ LPA E
Sbjct: 333 PVPDPPR-----MAARYYNSFAGTQSLLKTFFVKKKDESPVQARTVT---PLPAPEMRRD 384
Query: 262 GDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH----- 316
T SE+ ++ L + + + + E T IE+ D +A H
Sbjct: 385 ASTSRVSES--------PEAPTLASAFATIRSSKPERHATIMIEDDDDDDEIAEHPQPRS 436
Query: 317 ---STITQGSSNHIS--PFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSI 367
ST T SS P +R + K QL GQ +L SFF
Sbjct: 437 RSTSTATAQSSRPPDKRPRSDSASRSQPPKKQLNVRNGQSTLASFF-------------A 483
Query: 368 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 427
S +DT + VP S + P SCS +++
Sbjct: 484 DPVSGKTRRPESDTKKRRSTVPGSQSENLDEP----SCSASTSQRASATASETAAQADGY 539
Query: 428 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
+R ++ + A +W + ++PLCK HKEPC V KPGP GR+F++C+R
Sbjct: 540 ERLPLQDSDPQAASQWNAL--FSPLAVPLCKMHKEPCTLWTVNKPGPNKGRKFYLCSRPV 597
Query: 488 GPAS------------NPEANCGYFKWAFS 505
G NP+ C +F+W+ S
Sbjct: 598 GQGHEEAASKNKNVILNPDYRCNHFEWSQS 627
>gi|121704746|ref|XP_001270636.1| ap endonuclease [Aspergillus clavatus NRRL 1]
gi|119398782|gb|EAW09210.1| ap endonuclease [Aspergillus clavatus NRRL 1]
Length = 620
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 125/520 (24%), Positives = 198/520 (38%), Gaps = 119/520 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F +F M R L+ G+R+FV GD+NIA ID A +F
Sbjct: 158 FRHNFIDLMDTRIRNLVAMGKRVFVTGDINIARGEIDAAHATEAIRKGTATEDEFVSTPA 217
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L + + FD+ RS HPERR YTCW A NYG+RID
Sbjct: 218 RRVFNQLLSDGKVLGARDEGREEPALFDICRSFHPERRGMYTCWEQRINARPGNYGSRID 277
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ L + ++ CD + L GSDH
Sbjct: 278 YVLCS---------LNTQDWF------CD-------------------SNIQEGLMGSDH 303
Query: 197 APVYMCLGEVPEIPQHSTPSL------------------ASRYLPIIRGVQQTLVSVLMK 238
PVY + + + L ++YL G L+ K
Sbjct: 304 CPVYAVFKDTVRLEEREVNMLDIVNPPGMFKNGERQQEYTTKYLLPTSG---RLIPEFDK 360
Query: 239 REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS-SNQESE 297
R K S K S ++P ST ++ +G+ + ++ S+Q+ +
Sbjct: 361 RRSIKDMFSRKPSTTMP---TSTPRVPTLEHSMSTQETQVSTAGLGSPIKTAAGSSQQIK 417
Query: 298 GEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLKSFF 353
G K + S I+P V R++ +++ GQ SL+ FF
Sbjct: 418 GVVRKRSQK-----------------SEVIAPVSVKRSKSGTAQQSTPPTAGQTSLRGFF 460
Query: 354 HKRSNVSHDDNNSITDTSLNVNNS-VTDTSL-----SQEEVPESHHHSNKIPVTDYSCSV 407
+++ SI+ +V+N +T+ S+ S E + + + TD +
Sbjct: 461 KPKNDAVGRTGRSISGNPESVSNGIITEQSVAFPIKSTEVATSTSSEAMQAVPTDTATQG 520
Query: 408 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 467
+ N + QD G +D V+ +W ++ + +P C+GH+EPC++
Sbjct: 521 DQPDLSNPIAPASSQD---GGFVIDP---IVSKEDWSKL--FTKRPVPRCEGHQEPCISL 572
Query: 468 VVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
KKPG GR F++C R GP+ N E C F WA
Sbjct: 573 TTKKPGINCGRAFWICPRPLGPSGNKEKGTQWRCPTFIWA 612
>gi|443713485|gb|ELU06313.1| hypothetical protein CAPTEDRAFT_176829 [Capitella teleta]
Length = 486
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1 MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQ-LEFNLSFSSSMYYRWEFLLCQGRR 59
M+ K++ DG +++ VI Y L+ ++ + F L F + R E +L G
Sbjct: 123 MTQHKMLSDDGEEIRLTVINVYCPMAVLDDPDSVERMAFKLKFYDLLQKRAEAILQSGSH 182
Query: 60 IFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERR 114
+ ++GD+N + ID CD +F ++ R W ++L S G F D FR HP++R
Sbjct: 183 VIILGDVNASHRPIDHCDPCDEKEFNQHPSRKWLNNLLRTPTNSNGLFVDSFRHFHPDQR 242
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
EAYTCW + TGA NYGTRID+I + V ++C IL D
Sbjct: 243 EAYTCWQTLTGARATNYGTRIDYI------------IGDTRLVEDSFSDCVILPD----- 285
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 234
+ GSDH PV L IP P L S+YLP G QQ L S
Sbjct: 286 ----------------VRGSDHCPVKAVL-HWECIPAKKYPPLCSKYLPEFVGKQQKLSS 328
Query: 235 VLMKREVAKQG 245
K K G
Sbjct: 329 YFSKGSGPKSG 339
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
+ PLC GHKE C+ R VKK GR F+VC R EG SN EA C +F+W K
Sbjct: 433 TAPLCSGHKEACLLRTVKKDSLNKGRDFWVCNRPEGHKSNKEARCEHFEWVSKK 486
>gi|156398432|ref|XP_001638192.1| predicted protein [Nematostella vectensis]
gi|156225311|gb|EDO46129.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 105/238 (44%), Gaps = 50/238 (21%)
Query: 18 VILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD 77
V++ C ++ +++F L F + R + LL G+ + V+GD+N A ID C+
Sbjct: 133 VVIINVYCPRADMENEDRIQFKLEFHRLLSKRVKALLNSGKHVIVLGDINAAHKPIDHCN 192
Query: 78 AGP--DFAKNEFRIWFRSMLVE--------------SGGSFFDVFRSKHPERREAYTCWP 121
DF+ R W +LV G D FR HP +REAYT W
Sbjct: 193 PCKYEDFSSFPGRAWLDELLVSLPLPDNSCDSSWKCVSGLLIDSFRYFHPLQREAYTNWS 252
Query: 122 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSY 181
++TGA Q NYGTRID+IL P L Q+ FV C +
Sbjct: 253 TSTGARQTNYGTRIDYILVDPPLLQQE-------FVDCVIRP------------------ 287
Query: 182 RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 239
+EGSDH PV +C + + + TP L ++++P G QQ LVS K+
Sbjct: 288 --------EVEGSDHCPV-VCTLKNRFLAANKTPLLCTKFMPEFSGKQQKLVSFFTKK 336
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 346 QLSLKSFFHKRSN----VSHDDNNS--ITDTSLNVNNSV------------------TDT 381
Q L SFF K+++ V D NN I++T L+ +N+ T+
Sbjct: 326 QQKLVSFFTKKTDNAFTVPTDLNNEKVISETELSASNTTKKRAPSSGSAVPNPKRAKTEK 385
Query: 382 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 441
S Q + N + C V + S + +D K + L ++
Sbjct: 386 STRQNTLLNFFGSKNVTKASSPKCIVDIVTDKPSGEVTR-EDTKSNQNMLLNPEPYSSVS 444
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
W+ I + PLC GH EP V R VKK GP +GR+F+ CAR EG ASN EA C +FK
Sbjct: 445 AWKSILK-GPPPAPLCPGHNEPSVLRTVKKKGPNYGRQFYCCARPEGHASNKEARCNFFK 503
Query: 502 W 502
W
Sbjct: 504 W 504
>gi|392589509|gb|EIW78839.1| DNase I-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 638
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 126/538 (23%), Positives = 195/538 (36%), Gaps = 106/538 (19%)
Query: 11 GVLLQI-MVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIA 69
G+++ + + +L C R+ + N F + R L+ +GR++ VVGD+N+
Sbjct: 145 GLVIDLGLFVLINVYCPNETSDTRLPYKMNYHFM--LQERVRKLVAEGRQVMVVGDINVC 202
Query: 70 PAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 124
A ID CD F + R WF++ G DV R PER+ YTCW +
Sbjct: 203 AAPIDHCDGHLPSNVETFYDHPARAWFQNWR-HPQGEMIDVLRQFWPERKGMYTCWNTKI 261
Query: 125 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWK 184
A NYGTRID++L PG P R
Sbjct: 262 SARDTNYGTRIDYVLVT---------------------------------PGLMPWIR-H 287
Query: 185 GGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR-YLPIIRGVQQTLVSVLMKREVAK 243
G + ++GSDH P+Y+ L + EI S + + +P+ Q+ + KR
Sbjct: 288 GDIQASVKGSDHCPIYVDLRD--EITTESGKIIYLKDVMPVDGNAQRVPPRIAAKRWDEF 345
Query: 244 QGKSCKFS------GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESE 297
GK S G PA + ++ ++ V + SG ++ E
Sbjct: 346 SGKQQLLSTFFGKKGKAPATPQADS-SQPAAKEVPPATKTRQSSGTRTASQSATDTIEHP 404
Query: 298 GEFTKTIE---------------NCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKS 342
++I+ N +S S+ + P A K AKK
Sbjct: 405 SSIPESIDVDVGSLKPSPSPTPQPSSTPNNPSSQSSSSTAGQKRKLPRAQSAASKPAKKP 464
Query: 343 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
+ GQ S+ SFF + S N+ TS+ + TD + + V ++ D
Sbjct: 465 KPGQSSIASFFAQPLAPSFSPPNT---TSIASRSQDTDRNPDRGPVTLPISAADPDLDAD 521
Query: 403 YSCSVH-----ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 457
Y ++ E V + S + K W + + + P C
Sbjct: 522 YQLALKLSQELEAEPVPPAATSTKESSKA----------------WSNL--MAPVAAPNC 563
Query: 458 KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKWA 503
H EP V K GP G+ F++C+R GP N E C YFKWA
Sbjct: 564 TVHDEPTKLYTVNKQGPNKGKTFYLCSRPVGPGYDRGRSERLREEVNHEYRCNYFKWA 621
>gi|146399949|gb|ABQ28691.1| apn1 [Neosartorya fischeri]
Length = 581
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/509 (24%), Positives = 192/509 (37%), Gaps = 98/509 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F SF M R L+ G+R+FV GDLNIA ID A K +EF
Sbjct: 120 FRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPA 179
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L + FD+ RS HP RR YTCW A NYG+RID
Sbjct: 180 RRVFNQLLSDGRVIGQRDEGREIPVLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRID 239
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ D+Q F ++ E L GSDH
Sbjct: 240 YVLCS-------LDMQDW-FSDSNIQEG--------------------------LMGSDH 265
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPII----RGVQQTLVSVLMK---REVAKQGKSCK 249
PVY +V + + L P + + Q+ L+ R + + K
Sbjct: 266 CPVYAVFKDVVRLGEKEVSILDIMNPPGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRS 325
Query: 250 FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCR 308
+S++ T + R + + V S+++Q + + T+TI+ R
Sbjct: 326 IKDMFSRKSSTNAQTPTTNPPALRRFASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVR 385
Query: 309 DSANVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
+ S P V R++ + + S GQ +LK FF +++ +
Sbjct: 386 KRSQ----------KSETGFPVSVKRSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--Q 433
Query: 365 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG------VNSSVC 418
+I S +V+ T+ S + P + + + L G ++
Sbjct: 434 ATIARDSASVSTVPTNQSAAFPRKPTPVTEPTALEAIPTAPAGEALPGEQPNSATTTTPA 493
Query: 419 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 478
S D+ KE +W ++ + +P C+GH+EPC++ KKPG GR
Sbjct: 494 SSQNDDTVHDPIASKE-------DWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGR 544
Query: 479 RFFVCARAEGPASNPEAN----CGYFKWA 503
F++C R GP+ N E C F WA
Sbjct: 545 SFWICPRPLGPSGNKEKGTQWRCPTFIWA 573
>gi|119493288|ref|XP_001263834.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
gi|119411994|gb|EAW21937.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
Length = 622
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/509 (24%), Positives = 192/509 (37%), Gaps = 98/509 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F SF M R L+ G+R+FV GDLNIA ID A K +EF
Sbjct: 161 FRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPA 220
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L + FD+ RS HP RR YTCW A NYG+RID
Sbjct: 221 RRVFNQLLSDGRVIGQRDEGREIPVLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRID 280
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ D+Q F ++ E L GSDH
Sbjct: 281 YVLCS-------LDMQDW-FSDSNIQEG--------------------------LMGSDH 306
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPII----RGVQQTLVSVLMK---REVAKQGKSCK 249
PVY +V + + L P + + Q+ L+ R + + K
Sbjct: 307 CPVYAVFKDVVRLGEKEVSILDIMNPPGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRS 366
Query: 250 FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCR 308
+S++ T + R + + V S+++Q + + T+TI+ R
Sbjct: 367 IKDMFSRKSSTNAQTPTTNPPALRRFASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVR 426
Query: 309 DSANVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
+ S P V R++ + + S GQ +LK FF +++ +
Sbjct: 427 KRSQ----------KSETGFPVSVKRSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--Q 474
Query: 365 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG------VNSSVC 418
+I S +V+ T+ S + P + + + L G ++
Sbjct: 475 ATIARDSASVSTVPTNQSAAFPRKPTPVTEPTALEAIPTAPAGEALPGEQPNSATTTTPA 534
Query: 419 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 478
S D+ KE +W ++ + +P C+GH+EPC++ KKPG GR
Sbjct: 535 SSQNDDTVHDPIASKE-------DWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGR 585
Query: 479 RFFVCARAEGPASNPEAN----CGYFKWA 503
F++C R GP+ N E C F WA
Sbjct: 586 SFWICPRPLGPSGNKEKGTQWRCPTFIWA 614
>gi|67537132|ref|XP_662340.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
gi|40741588|gb|EAA60778.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
Length = 554
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 120/514 (23%), Positives = 181/514 (35%), Gaps = 123/514 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F +F M R L+ G+R+FV GD+NI+ ID A DF
Sbjct: 108 FRQNFLDLMDARVRNLVALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPA 167
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L++ FD+ RS HP+R+ YTCW A NYG+RID
Sbjct: 168 RRLFNQLLIDGKVVGDRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRID 227
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D K W + + L GSDH
Sbjct: 228 YVLCS--------------------------LDMKDW--------FFDSNIQEGLMGSDH 253
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF- 250
PVY ++ +P+ G Q ++ ++ V K G+ + KF
Sbjct: 254 CPVYAVFKDL---------------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFL 297
Query: 251 ---SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC 307
SG L E + +D + S Q + SN+ES +T N
Sbjct: 298 LPLSGRLIPEFDRRRSIKDMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNT 354
Query: 308 -----RDSANVASHSTITQGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHK 355
D+ S+ T+ +G+ + P + A + +GQ +LK FF
Sbjct: 355 PKPSDADAPASVSNDTLQKGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKP 414
Query: 356 RSNVSHDDNNSITDTSLNVNN--SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 413
+ + DN D ++ E+ ++ K P E G
Sbjct: 415 KCTLEPKDNMLSKDEGQGPAEFPFISSQQDVTEQTSKAALEPEKAPTPMTPVLSKEDAGF 474
Query: 414 NSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 473
V S +W ++ + P C H E C++ KKPG
Sbjct: 475 IDPVASKQ--------------------DWSKL--FTKKPPPKCGEHGEECISLKTKKPG 512
Query: 474 PTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P FGR F++C R GP+ N E C F WA
Sbjct: 513 PNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 546
>gi|259482425|tpe|CBF76897.1| TPA: DNA lyase Apn2 (AFU_orthologue; AFUA_3G06180) [Aspergillus
nidulans FGSC A4]
Length = 612
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 120/514 (23%), Positives = 181/514 (35%), Gaps = 123/514 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F +F M R L+ G+R+FV GD+NI+ ID A DF
Sbjct: 166 FRQNFLDLMDARVRNLVALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPA 225
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L++ FD+ RS HP+R+ YTCW A NYG+RID
Sbjct: 226 RRLFNQLLIDGKVVGDRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRID 285
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D K W + + L GSDH
Sbjct: 286 YVLCS--------------------------LDMKDW--------FFDSNIQEGLMGSDH 311
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF- 250
PVY ++ +P+ G Q ++ ++ V K G+ + KF
Sbjct: 312 CPVYAVFKDL---------------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFL 355
Query: 251 ---SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC 307
SG L E + +D + S Q + SN+ES +T N
Sbjct: 356 LPLSGRLIPEFDRRRSIKDMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNT 412
Query: 308 -----RDSANVASHSTITQGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHK 355
D+ S+ T+ +G+ + P + A + +GQ +LK FF
Sbjct: 413 PKPSDADAPASVSNDTLQKGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKP 472
Query: 356 RSNVSHDDNNSITDTSLNVNN--SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 413
+ + DN D ++ E+ ++ K P E G
Sbjct: 473 KCTLEPKDNMLSKDEGQGPAEFPFISSQQDVTEQTSKAALEPEKAPTPMTPVLSKEDAGF 532
Query: 414 NSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 473
V S +W ++ + P C H E C++ KKPG
Sbjct: 533 IDPVASKQ--------------------DWSKL--FTKKPPPKCGEHGEECISLKTKKPG 570
Query: 474 PTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P FGR F++C R GP+ N E C F WA
Sbjct: 571 PNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
>gi|392565223|gb|EIW58400.1| DNase I-like protein [Trametes versicolor FP-101664 SS1]
Length = 632
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 121/510 (23%), Positives = 188/510 (36%), Gaps = 107/510 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 88
+L F +++ + R L+ + R + V+GD+N+ +D + +++ F R
Sbjct: 166 RLSFKMNYHLMLQERVRKLIEEEHREVIVLGDINVCATPLDHAEGHFASSQDTFYDHPAR 225
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
WF G DV R+ PER+ YTCW + A + NYG RID+IL L
Sbjct: 226 AWFHKWR-SPNGPMIDVIRTFWPERKGLYTCWNTKLQARETNYGGRIDYILVTKGLL--- 281
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL----- 203
SH G + L+GSDH P+Y+ L
Sbjct: 282 -PWISH------------------------------GDIQPSLKGSDHCPIYIDLRDEIV 310
Query: 204 ---GEVPEIPQ--------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK------QGK 246
GE + P LA+++ G Q L + KR V+K Q
Sbjct: 311 LESGETVTLRDAMQQTDVARDPPRLAAKFWDEFSGKQTVLSAFFGKRAVSKDASNNEQQT 370
Query: 247 SCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIEN 306
SGS ++ G++ +VD L S +S E +K I+
Sbjct: 371 PPILSGS--QRADPPGNSSAVM-DVDVQL-----SATQSASQPIASTPAPSPEVSKKIKP 422
Query: 307 CRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNS 366
+ S + +T N P + K +K GQ SL SFF K + S +
Sbjct: 423 PQPSKLAPTSAT------NKRKPLEPTASSSKKRKQVKGQASLASFFSKPAAASPSKSRE 476
Query: 367 ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY--SCSVHELHGVNSSVCSHDQDE 424
+ + + + T ++L+ + P S +++ DY +C + + S S QD
Sbjct: 477 VIEIEDDAPTAST-SALAPDTPPLSQAEQDQL-DADYRLACELAQEDAEPSPTPSSSQDP 534
Query: 425 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
+ K W + P C H EP V KPGP G+ FF+C+
Sbjct: 535 TQKK------------AAWSEL--FAPIQPPHCTVHGEPTKMYTVNKPGPNKGKTFFICS 580
Query: 485 RAEGPASNPEAN------------CGYFKW 502
R GP + + C YFKW
Sbjct: 581 RPVGPGYDKGKSERLREEVDHRYRCNYFKW 610
>gi|115402641|ref|XP_001217397.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
gi|114189243|gb|EAU30943.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
Length = 592
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 122/512 (23%), Positives = 187/512 (36%), Gaps = 112/512 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F SF M R L+ G+R+ V GDLNI+ ID+ A DF
Sbjct: 139 FRQSFLDLMDTRLRNLVAMGKRVVVTGDLNISAREIDQAPAAEAIRKGTLTEDDFVSAPA 198
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L E D+ R HP+R+ YTCW A NYG+RID
Sbjct: 199 RRLFNQLLFEGKVLGQRDEGREQPVLHDICRMFHPDRKGMYTCWEQRINARPGNYGSRID 258
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D + W + + L GSDH
Sbjct: 259 YVLCS--------------------------LDMRDWIEDS--------NIQEGLMGSDH 284
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYL-----------------PIIRGVQQTLVSVLMKR 239
PVY +V +P P + +I L+ KR
Sbjct: 285 CPVYAIFKDV--VPLDGKPVNIRDIMNPPGVFANGERKQEYTTKLILPTSGRLIPEFDKR 342
Query: 240 EVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGE 299
K S K S + A +T TE SG Q + E +
Sbjct: 343 RSIKDMFSRKPSAT--ATKGNTIATEPSP------------SGPQQANAANVCPPEEKPA 388
Query: 300 FTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL-GQLSLKSFFHKRSN 358
T T + + A + S I P ++ + L GQ SLK FF + +
Sbjct: 389 LTPTPSGPQPAQGGARKRS---QRSEPIPPVKRSKSTPTPIQGALGGQKSLKGFFKPKVS 445
Query: 359 VSHDDN---NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNS 415
V+ D + +D+ + + + +TS ++ + +NKI S + +S
Sbjct: 446 VTEQDKVGPSRGSDSPGLIPDPLPETSSNEPDNSADAQSANKIEGNPDSPRKGQPAAPSS 505
Query: 416 SVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
++ + F+D V+ +W ++ + + P C+GH+EPC++ KKPG
Sbjct: 506 ---------QENETFIDP---IVSKEDWSKLFS-KKKAAPKCEGHQEPCISLTTKKPGVN 552
Query: 476 FGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ N E C F WA
Sbjct: 553 CGRSFWICPRPLGPSGNKEKGTQWRCSTFIWA 584
>gi|296804272|ref|XP_002842988.1| ap endonuclease [Arthroderma otae CBS 113480]
gi|238845590|gb|EEQ35252.1| ap endonuclease [Arthroderma otae CBS 113480]
Length = 574
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 117/499 (23%), Positives = 187/499 (37%), Gaps = 105/499 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F L F + + R L+ G+R+ + GDLNI+PA ID A ++ +
Sbjct: 140 FRLGFLNILDARVRNLIKMGKRVVLTGDLNISPAPIDSAPATERIRKSAETEEEYISSPA 199
Query: 88 RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +++ VE+ D+ R HP R YTCW A NYG+RID
Sbjct: 200 RCLFNTLVRRVGSTGDADNVETPPVLRDLCREFHPHRTGMYTCWEQRVNARPGNYGSRID 259
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ D H FV ++ E L GSDH
Sbjct: 260 YILCS--------DDIRHWFVESNIQEG--------------------------LMGSDH 285
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 256
PVY +G+ + L I+ + + R V + SG +
Sbjct: 286 CPVYASIGDRVRLDGKDV-----HILDIMNPIGSFEDGIEQPRPV--KISPLPLSGKMIP 338
Query: 257 ESNSTGDTEDCSENVDRS-LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 315
E + + +D + S N+ Y S +S + +EN +
Sbjct: 339 EFDRRRNIKDMFKKHSLSRTNSEIKVSAETDTYTGSETSDSGSQSKIAMENKNTPLTMNP 398
Query: 316 HSTITQGSSNHISPFHVDRARKKAKKSQL-GQLSLKSFF--HKRSNVSHDDNNSITDTSL 372
+ G +SP + + + S+ GQ +L FF + S V ++N +++ S
Sbjct: 399 PTKRGHGKVAQVSPSKRLKQKSRPVGSRSNGQQTLAGFFKSERTSRVVGEENATVSTIS- 457
Query: 373 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 432
P+ H + TD + E N +V + + K F+D
Sbjct: 458 ----------------PQGSHAETQPNPTDEPSATAE---ANDTVPT-----ETTKTFVD 493
Query: 433 KERNNVALL-----EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
+ VA W ++ + +P C+GH E C++ V KKPG GR F++C+R
Sbjct: 494 ---DYVAFSCSPTESWSKV--FTKKPVPKCEGHDEDCISLVTKKPGMNCGRSFWICSRPL 548
Query: 488 GPASNPEAN----CGYFKW 502
GP+ + E C F W
Sbjct: 549 GPSGDKETGTPWRCPTFIW 567
>gi|83773202|dbj|BAE63329.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 636
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 124/518 (23%), Positives = 189/518 (36%), Gaps = 116/518 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F F M R L+ G+R+FV GDLNI+ ID A K +EF
Sbjct: 178 FRQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPA 237
Query: 88 RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV SG + FD+ RS HP RR YTCW A NYG+RI
Sbjct: 238 RRLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRI 296
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++L C +N D + + L GSD
Sbjct: 297 DYVL-------------------CSLNMQDWFCE---------------SDIQEGLMGSD 322
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS-------- 247
H PVY + + G Q ++ ++ + G+
Sbjct: 323 HCPVYAIFKDSV----------------CLNGQQVNMLDIMNPPGIFDNGERRQEYTTKL 366
Query: 248 -CKFSGSLPAESNSTGDTEDC-SENVDRSLNNYCDSGIL-------QGVYCSSSNQESEG 298
SG L E + +D S D S + L + VY + + S G
Sbjct: 367 LLPTSGRLIPEFDKRRSIKDMFSRKPDMSSQKLPTTSALTACASIREQVYKIDAEENSLG 426
Query: 299 EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFH 354
++ S T+ + S P V R++ +++ Q +LK FF
Sbjct: 427 ASKPSLPIADSSPT--PKGTVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFK 484
Query: 355 KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN 414
+ VS + I++T + V S +P S S D + +H V
Sbjct: 485 PKGVVS----SQISETK-TPDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVP 535
Query: 415 SSVCSHDQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVV 469
++ S+ F+ + V + +W ++ + +P+C+GH+EPC++
Sbjct: 536 AAPTSYMDSSGPAAPFVGQNSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLST 593
Query: 470 KKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
KKPG GR F++C R GP+ N E C F WA
Sbjct: 594 KKPGINCGRSFWICPRPLGPSGNKEKGTQWRCATFIWA 631
>gi|402223533|gb|EJU03597.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 616
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 120/499 (24%), Positives = 181/499 (36%), Gaps = 103/499 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 88
+L F ++F + + R L+ + R + VVGD+NI ID CD ++ + R
Sbjct: 170 RLSFKINFHNMLRERVRILIEEEHREVIVVGDINICSQPIDHCDGRLQSKRSVWWDHPPR 229
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+W R L + G D+ R P+R YTCW + A NYGTRID++LC
Sbjct: 230 VWLRDWL-QPTGKLVDLTRKFWPDRTGMYTCWNTLIDARTANYGTRIDYVLCT------- 281
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
+ + DIL + + GSDH PV++ +
Sbjct: 282 ------EGLIPWIMHSDILPN---------------------VHGSDHCPVFVDFFDEIT 314
Query: 209 IPQHSTPSLAS--RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 266
+P L +Y P + + R + +FS P S+ G T
Sbjct: 315 LPDGKVRRLREEMKYDP----------TRALPRIATRNWD--EFSNKQPLLSSFFGKTA- 361
Query: 267 CSENVDRSLNNYCD---SGILQGVYCSSSNQESEGEFTKTIENC--RDSANVASHSTITQ 321
+ +DR ++ CD + Q + S + N RD+A + + +
Sbjct: 362 ITPPIDRPPSSSCDPKEQPMSQAPETTFETSHSPDSLSDAASNAVSRDTAPLPAQVVVGA 421
Query: 322 GSSNHISPFHV-----DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNN 376
SS S ++ + K+ + QL L SFF +
Sbjct: 422 PSSAPKSQRQATSQDRNKGKDAKKRPKNRQLKLSSFFGAK----------------GAAE 465
Query: 377 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 436
S T S+ + +S S + P S E+ VC + G E +
Sbjct: 466 SSTQAVPSKVKSSKSRTPSQRTPSQSTQNSTSEIEDSEDDVCWEKIIGQSGA----SESS 521
Query: 437 NVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------ 490
A W I L S P C GH P VV KPGPT GR F++C+ G
Sbjct: 522 KAA---WSNI--LTRPSAPKCSGHGLPAKEFVVNKPGPTKGRHFYLCSLPVGTGYDAGHS 576
Query: 491 ------SNPEANCGYFKWA 503
NPE C +F WA
Sbjct: 577 KRLREEVNPEFRCNFFMWA 595
>gi|238505976|ref|XP_002384190.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
gi|220690304|gb|EED46654.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
Length = 630
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 189/512 (36%), Gaps = 111/512 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F F M R L+ G+R+FV GDLNI+ ID A K +EF
Sbjct: 179 FRQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPA 238
Query: 88 RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV SG + FD+ RS HP RR YTCW A NYG+RI
Sbjct: 239 RRLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRI 297
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++L C +N D + + L GSD
Sbjct: 298 DYVL-------------------CSLNMQDWFCE---------------SDIQEGLMGSD 323
Query: 196 HAPVYMCLGE-VPEIPQHSTPSL-------ASRYLPIIRGVQQTLVSVLMKREVAKQGKS 247
H PVY + V + + P + ++ L+ KR K S
Sbjct: 324 HCPVYAIFKDSVNMLDIMNPPGIFDNGERRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFS 383
Query: 248 CK---FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTI 304
K S LP S T C S I + VY + + S G ++
Sbjct: 384 RKPDMSSQKLPTTSALTA----------------CAS-IREQVYKIDAEENSLGASKPSL 426
Query: 305 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVS 360
S T+ + S P V R++ +++ Q +LK FF + VS
Sbjct: 427 PIADSSPT--PKGTVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS 484
Query: 361 HDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSH 420
+ I++T + V S +P S S D + +H V ++ S+
Sbjct: 485 ----SQISETK-TPDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSY 535
Query: 421 DQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
F+ + V + +W ++ + +P+C+GH+EPC++ KKPG
Sbjct: 536 MDSSGPAAPFVGQNSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGIN 593
Query: 476 FGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ N E C F WA
Sbjct: 594 CGRSFWICPRPLGPSGNKEKGTQWRCATFIWA 625
>gi|146323277|ref|XP_754988.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|129558370|gb|EAL92950.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|159128003|gb|EDP53118.1| DNA lyase Apn2 [Aspergillus fumigatus A1163]
Length = 648
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 127/513 (24%), Positives = 186/513 (36%), Gaps = 106/513 (20%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F SF M R L+ G+R+FV GDLNIA +D A K +EF
Sbjct: 187 FRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGELDAAHATEAIRKGAITEDEFISAPA 246
Query: 88 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L + FD+ RS HP RR YTCW A NYG RID
Sbjct: 247 RRVFNQLLSDGRVIGQRDEGRESPVLFDICRSFHPGRRGMYTCWEQRIIARPGNYGARID 306
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ D+Q F ++ E L GSDH
Sbjct: 307 YVLCS-------LDMQDW-FSDSNIQEG--------------------------LMGSDH 332
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF----SG 252
PVY +V + L P + K +Q + K+ SG
Sbjct: 333 CPVYAVFKDVVRLGDKEVNILDIMNPP-----------GMFKDGQRQQEYTTKYLLPTSG 381
Query: 253 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 312
L E + +D S N + + S E+E T E+ +
Sbjct: 382 RLIPEFDKRRSIKDMFSR-KPSTNAQTPATNPPALRRFGSTHETETP-TAVSESTAGRSV 439
Query: 313 VASHSTITQ-------GSSNHISPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSH 361
S ST T+ S SP R++ + + S GQ +LK FF +++ +
Sbjct: 440 AVSDSTQTKQIVRKRSQKSEAGSPVSFKRSKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG 499
Query: 362 DDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 421
+IT S +V+ T+ S++ PVT+ + +
Sbjct: 500 --QATITQDSASVSTVPTNQSVA--------FPRESAPVTELTALEETRTAPAGEALPGE 549
Query: 422 QDEKKGKRFLDKERNN-------VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGP 474
Q RN+ + +W ++ + P C+GH+EPC++ KKPG
Sbjct: 550 QPNSTTTTTPASSRNDDTVHDPIASKEDWSKL--FTKKPAPKCEGHQEPCISLTTKKPGI 607
Query: 475 TFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ N E C F WA
Sbjct: 608 NCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 640
>gi|336366993|gb|EGN95339.1| hypothetical protein SERLA73DRAFT_171084 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379716|gb|EGO20871.1| hypothetical protein SERLADRAFT_477369 [Serpula lacrymans var.
lacrymans S7.9]
Length = 618
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 194/511 (37%), Gaps = 110/511 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRI 89
+L F +++ + R L+ +GR + VVGD+NI +D CD F ++ R
Sbjct: 166 RLPFKMNYHYMLQERVRGLMEEGREVLVVGDINICATPLDHCDGNLASNASYFHEHPARA 225
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
WF S L + G D+ R P+R+ YTCW + A + NYGTR+D+IL
Sbjct: 226 WFHSWL-DPTGHMIDIVRRFWPDRKGMYTCWNTKISARETNYGTRVDYILV--------- 275
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
+H V + G + L+GSDH P+Y+ L + +
Sbjct: 276 ---THGLV----------------------PWVKHGDIQPSLKGSDHCPIYIDLHDSITL 310
Query: 210 ----------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 253
+ P +A++Y G +QTL+S +K+G + SG+
Sbjct: 311 DSGVKLHLRDVMQMNGEKREPPRIAAKYWEEFSG-KQTLLSTFF----SKKGGALP-SGA 364
Query: 254 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 313
P+ + T S + + S LQ N + + S+
Sbjct: 365 SPSPAELTPVVTGPSVTLPAEV-----STTLQVTPVRLPNTSG--ASSTSSSQPPYSSKQ 417
Query: 314 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS---NVSHDDNNSITDT 370
S + +Q P + RK +KK + GQ SL +FF + S + H + S +
Sbjct: 418 TSAPSPSQKRKLLTEP--RESMRKASKKVKKGQTSLSTFFSQPSASQTLPHTPSVSRMED 475
Query: 371 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 430
L + ++ T+ P+ + S DY ++ EL + S
Sbjct: 476 VLVILHADTN--------PDGYIAS------DYRMAL-ELSNSQEKIVSQSCASATSSSS 520
Query: 431 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
+K W Q L P C H EP V KPGP G+ FF+C+R GP
Sbjct: 521 HNKT-------AWS--QLLAPVQPPKCLVHGEPAKEFTVHKPGPNKGKNFFICSRPVGPG 571
Query: 491 SNP------------EANCGYFKWAFSKSKQ 509
+ + C +FKW+ K+
Sbjct: 572 YDKGKAERLREEVDHQYRCNFFKWSSEVKKE 602
>gi|391340727|ref|XP_003744688.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Metaseiulus occidentalis]
Length = 453
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 11 GVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAP 70
G Q++V Y + R Q ++N F++ + ++ L+ +G + + GD+NI+
Sbjct: 138 GQTKQLLVFNLYCPRNDPDRPERAQFKYN--FNAMLEHQAVCLVKKGFHVILTGDMNISH 195
Query: 71 AAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQF 129
ID CD G DF ++ RIW ML + +F DVFR HP+ +E YTCW S A
Sbjct: 196 KRIDNCDPGEDFEESPARIWLTKMLDQQNDVYFVDVFRHMHPDAKEQYTCWNSQKSARLT 255
Query: 130 NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMST 189
N+GTRID+I+C L + CDI D
Sbjct: 256 NFGTRIDYIICDSKLLE-------------YFESCDIHPD-------------------- 282
Query: 190 RLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 239
+ GSDH PV L ++ I +R P G Q +L S L+K+
Sbjct: 283 -VMGSDHCPVSAVL-KLNLISNEKLIRKCTRNWPEFSGKQTSLSSFLVKK 330
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
PLC GH E V R+VKK G G+RF+ CAR EG + N EA C +F W
Sbjct: 405 PLCSGHGELSVLRIVKKDGINKGKRFYCCARPEGRSDNKEARCSFFVW 452
>gi|55741922|ref|NP_001006804.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
gi|49903339|gb|AAH76676.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
Length = 517
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 53/244 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 95
+ L F + R E +L +G + ++GD+N + +D CD F +N R W L
Sbjct: 156 YKLRFYRLLQTRAEAILQKGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFL 215
Query: 96 VE---------------SGGS--FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
+ SGGS F+D FR HP +R A+TCW S +GA Q NYGTRID+I
Sbjct: 216 GDPVPSQKGDSETGTPPSGGSGRFYDSFRYFHPTQRNAFTCWCSASGARQTNYGTRIDYI 275
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
L +L F+ D +I +EGSDH P
Sbjct: 276 L-------GNSELVEREFL-------DSII-------------------MPEVEGSDHCP 302
Query: 199 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAES 258
V + P I + P L ++YLP G QQ L+ LMK+E + + S L ++S
Sbjct: 303 VKAVMKCRP-IAANKCPPLCTKYLPEFAGRQQKLLQFLMKKENTSGNATEESSELLGSQS 361
Query: 259 NSTG 262
++ G
Sbjct: 362 SAEG 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507
P CKGH EPCV R VKK GP GR+F+VCAR EG ++NP+A C +F W K+
Sbjct: 461 PNCKGHGEPCVLRTVKKAGPNCGRQFYVCARPEGHSTNPQARCNFFLWLTKKA 513
>gi|242266565|gb|ACS91130.1| APN2 [Microsporum gypseum]
Length = 596
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/499 (24%), Positives = 186/499 (37%), Gaps = 105/499 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----------EF 87
F L F S + R L+ G+R+ + GDLNI+PAAID A KN
Sbjct: 162 FRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPA 221
Query: 88 RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ +E+ D+ R HP R YTCW A NYG+RID
Sbjct: 222 RRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRID 281
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ D++ FV ++ E L GSDH
Sbjct: 282 YILCS-------DDIRPW-FVESNIQEG--------------------------LMGSDH 307
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLP 255
PVY + + T R + I+ + T +++ + + SG L
Sbjct: 308 CPVYASISD--------TVPFEGRNVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLI 359
Query: 256 AESNSTGDTEDCSENVDRS-LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV- 313
E + + +D N S N+ + I + +EN S +
Sbjct: 360 PEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALENKSPSVTMN 419
Query: 314 ----ASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSIT 368
SHS Q S + P ++R +S GQ +L FF T
Sbjct: 420 PPSKRSHSKAAQTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSER----------T 464
Query: 369 DTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKG 427
+++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 465 SRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPDSSVA 519
Query: 428 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
F E W ++ + +P C+GH E C++ V KKPG GR F++C+R
Sbjct: 520 SLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICSRPL 570
Query: 488 GPASNPEAN----CGYFKW 502
GP+ + E+ C F W
Sbjct: 571 GPSGDKESGTPWRCPTFIW 589
>gi|321477228|gb|EFX88187.1| hypothetical protein DAPPUDRAFT_305561 [Daphnia pulex]
Length = 476
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 37/210 (17%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L + L F ++ R L QG + V+GD+N++ ID C+ F K+ R+W
Sbjct: 153 RLPYKLEFYRALNLRCHDFLSQGYYVIVLGDMNVSHRLIDHCEPEDVSSFPKSPSRLWLD 212
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
L E GG F D FR +P + +A+TCW + A NYGTRID+IL +
Sbjct: 213 GFLHEGGGKFVDSFRHLYPTKEKAFTCWNTKLSARVNNYGTRIDYILLS----------- 261
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 212
N +T + +C I+ D + GSDH PV L + IP
Sbjct: 262 --NQLTDALQDCIIMSD---------------------VYGSDHCPVKSSLA-LDIIPST 297
Query: 213 STPSLASRYLPIIRGVQQTLVSVLMKREVA 242
P+L +++ G Q + + KR +A
Sbjct: 298 KLPALCTKFFKEFSGKQLKMSTFFCKRTLA 327
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+E C R VKK GP R+F+ C+RA G +S+ A C +F WA
Sbjct: 426 PLCSGHQEACTLRTVKKKGPNMNRQFWTCSRATGHSSDLNAQCNFFVWA 474
>gi|393221878|gb|EJD07362.1| DNase I-like protein [Fomitiporia mediterranea MF3/22]
Length = 669
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 136/546 (24%), Positives = 191/546 (34%), Gaps = 139/546 (25%)
Query: 35 QLEFNLSFSSSMYYRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 88
+L + ++F + R L R + VVGD+N+ A ID CD K EF R
Sbjct: 168 RLPYKMNFHLLLQERVRLLTEVDKREVIVVGDINVCAAPIDHCDGELPSNKEEFWVHPAR 227
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ- 147
WF L G +D+ R+ PER+ YTCW A NYGTRID+ L L
Sbjct: 228 KWFHEWL-HPIGPMYDIVRNCWPERKGMYTCWNQKIDARTTNYGTRIDYFLLTKGLLPWF 286
Query: 148 KH-DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL--- 203
KH D+Q+H ++GSDH PVY+ L
Sbjct: 287 KHGDIQAH------------------------------------VKGSDHCPVYIDLHDQ 310
Query: 204 -----GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVA-------- 242
G+ + + P LA+++ G QQ L S K+
Sbjct: 311 ITDEGGDTLYLKDMLKMNGEKRDPPRLATKFWVEYSGKQQVLSSFFGKKAATASESDLAI 370
Query: 243 --------KQGKSCKFSGSLPAESNSTGDTEDCSENVDRS--LNNYCDSGILQGVYCSSS 292
GKS + S PA ++S E S + ++ +Y I
Sbjct: 371 ASTVSIRPASGKSSTVA-STPATTDSGKTREIESREISKADESKSYNQEAIFPPPVPEEK 429
Query: 293 NQESEGEFTKTIENCRD---------SANVASHSTI------TQGSSNHISPFHVDRARK 337
S TI + + SA VA+ + Q SN+ P + K
Sbjct: 430 IARSSTSSNLTIISSTNDPHSNGSLSSATVAAEAAPPLKRKKMQADSNY--PAQAPKKSK 487
Query: 338 --------KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
K K+S Q+ L SFF ++ + S D +EE P
Sbjct: 488 KGNSAPKLKGKESTTAQMKLSSFFSGPTS----------------SQSQADVDDKEEESP 531
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
S I V D + + V S V G +K N+ W +
Sbjct: 532 IRSQKSEVIDV-DALLNDSDALTVQSEVQLSPPVTVPGSSRTEKGNNSHT---WSTLFAR 587
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANC 497
+E P C H E C V KPGP G+ FF+CAR GP N + C
Sbjct: 588 IEP--PKCVVHGEACREFTVNKPGPNKGKAFFICARPVGPGYDAGKDRRLREEVNSQYRC 645
Query: 498 GYFKWA 503
+FKW+
Sbjct: 646 NFFKWS 651
>gi|242266571|gb|ACS91135.1| APN2 [Microsporum gypseum]
Length = 596
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 189/502 (37%), Gaps = 111/502 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----------EF 87
F L F S + R L+ G+R+ + GDLNI+PAAID A KN
Sbjct: 162 FRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPA 221
Query: 88 RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ +E+ D+ R HP R YTCW A NYG+RID
Sbjct: 222 RRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRID 281
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ D++ FV ++ E L GSDH
Sbjct: 282 YILCS-------DDIRPW-FVESNIQEG--------------------------LMGSDH 307
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLP 255
PVY + + T R + I+ + T +++ + + SG L
Sbjct: 308 CPVYASISD--------TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLI 359
Query: 256 AESNSTGDTEDCSEN---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIEN 306
E + + +D N + S+ +G+ ++ E +K+
Sbjct: 360 PEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSV 416
Query: 307 CRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNN 365
+ + SHS Q S + P ++R +S GQ +L FF
Sbjct: 417 TMNPPSKRSHSKAAQTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSER-------- 463
Query: 366 SITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDE 424
T +++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 464 --TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPDS 516
Query: 425 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
F E W ++ + +P C+GH E C++ V KKPG GR F++C+
Sbjct: 517 SVASLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICS 567
Query: 485 RAEGPASNPEAN----CGYFKW 502
R GP+ + E+ C F W
Sbjct: 568 RPLGPSGDKESGTPWRCPTFIW 589
>gi|350297224|gb|EGZ78201.1| DNase I-like protein [Neurospora tetrasperma FGSC 2509]
Length = 654
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 121/553 (21%), Positives = 207/553 (37%), Gaps = 119/553 (21%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E ++EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 149 FVLIGVYSPATRDE----TRIEFRQAFIDAMDARVRNLVSMGKEVFLCGDLNIIRNEMDT 204
Query: 76 CDAGPDFAKNEFRI---------WFRSMLVESG------------GSFFDVFRSKHPERR 114
K + F + +V G +D+ R HP+R
Sbjct: 205 AGLPEQLKKEAMTLDQFISTPSRRFLNQIVVGGRVIGEPDEGREKPVLWDLCREFHPKRP 264
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
YTCW + A N+G+RID++LC+ FV ++ E
Sbjct: 265 GMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDANIQEG---------- 306
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE--------VP------------------E 208
L GSDH PVY + + +P E
Sbjct: 307 ----------------LLGSDHCPVYATISDSVSRDGVIIPITDIMNPEGMFKNGQRQRE 350
Query: 209 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 268
Q ++R +P +Q++ + +K+ K + P + D++D S
Sbjct: 351 WSQKDCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPKSATPAADSQDIS 400
Query: 269 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 328
++ + S + +LQG S+S+ + E + Q +
Sbjct: 401 DSPNTSSITVNATTVLQGTASSASSPRQWLSQSAATEPALSQTSPVPKRQAEQPAPYTRP 460
Query: 329 PFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDT 381
P A K S+ G Q +L FF ++ V+ D+ + + + + + +T
Sbjct: 461 PKKTKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPINGNNHSPATTAET 520
Query: 382 SL------SQEEVPESHHHSNKIPVTDYSCSVHELHGVN-SSVCSHDQDEKKGKRFLDKE 434
+L ++E P+ ++ I D + H+ + + +DE KGK D
Sbjct: 521 ALRNEPSTAKESQPKQSFEADNIEEWDENTVEHKTNPTTYRETSTAMEDEGKGKTIFDPI 580
Query: 435 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 494
+N + W ++ L + +P C+ H E C + V KKPG GR F++CAR GP+ N E
Sbjct: 581 QNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCARPLGPSGNKE 634
Query: 495 AN----CGYFKWA 503
C F W+
Sbjct: 635 TGTEFRCKTFIWS 647
>gi|242266576|gb|ACS91139.1| APN2 [Microsporum gypseum]
Length = 596
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 189/502 (37%), Gaps = 111/502 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----------EF 87
F L F S + R L+ G+R+ + GDLNI+PAAID A KN
Sbjct: 162 FRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPA 221
Query: 88 RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ +E+ D+ R HP R YTCW A NYG+RID
Sbjct: 222 RRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRID 281
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ D++ FV ++ E L GSDH
Sbjct: 282 YILCS-------DDIRPW-FVESNIQEG--------------------------LMGSDH 307
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLP 255
PVY + + T R + I+ + T +++ + + SG L
Sbjct: 308 CPVYASISD--------TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLI 359
Query: 256 AESNSTGDTEDCSEN---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIEN 306
E + + +D N + S+ +G+ ++ E +K+
Sbjct: 360 PEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSV 416
Query: 307 CRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNN 365
+ + SHS Q S + P ++R +S GQ +L FF
Sbjct: 417 TMNPPSKRSHSKAAQTPPSKRLKP----KSRPTGARSN-GQQTLAGFFKSER-------- 463
Query: 366 SITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDE 424
T +++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 464 --TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPDS 516
Query: 425 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
F E W ++ + +P C+GH E C++ V KKPG GR F++C+
Sbjct: 517 SVASLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICS 567
Query: 485 RAEGPASNPEAN----CGYFKW 502
R GP+ + E+ C F W
Sbjct: 568 RPLGPSGDKESGTPWRCPTFIW 589
>gi|315047122|ref|XP_003172936.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
gi|311343322|gb|EFR02525.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
Length = 604
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 189/502 (37%), Gaps = 111/502 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----------EF 87
F L F S + R L+ G+R+ + GDLNI+PAAID A KN
Sbjct: 170 FRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPA 229
Query: 88 RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ +E+ D+ R HP R YTCW A NYG+RID
Sbjct: 230 RRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGSRID 289
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ D++ FV ++ E L GSDH
Sbjct: 290 YILCS-------DDIRPW-FVESNIQEG--------------------------LMGSDH 315
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSLP 255
PVY + + T R + I+ + T +++ + + SG L
Sbjct: 316 CPVYASISD--------TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKLI 367
Query: 256 AESNSTGDTEDCSEN---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIEN 306
E + + +D N + S+ +G+ ++ E +K+
Sbjct: 368 PEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPSV 424
Query: 307 CRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNN 365
+ + SHS Q S + P ++R +S GQ +L FF
Sbjct: 425 TMNPPSKRSHSKAAQTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSER-------- 471
Query: 366 SITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQDE 424
T +++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 472 --TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPDS 524
Query: 425 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
F E W ++ + +P C+GH E C++ V KKPG GR F++C+
Sbjct: 525 SVASLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWICS 575
Query: 485 RAEGPASNPEAN----CGYFKW 502
R GP+ + E+ C F W
Sbjct: 576 RPLGPSGDKESGTPWRCPTFIW 597
>gi|403415135|emb|CCM01835.1| predicted protein [Fibroporia radiculosa]
Length = 576
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 190/508 (37%), Gaps = 110/508 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFR 88
+L F ++F + R L+ + R + V+GD+NIA A +D D F + R
Sbjct: 118 RLPFKMNFHLLLQERVRKLIEEEHREVIVLGDINIAAAPLDHGDGHLPSNVATFWDHPAR 177
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ- 147
WFR L G DV RS P+R+ +TCW A + NYG RID++L L
Sbjct: 178 QWFRQWL-NPNGPMIDVIRSFWPDRKGLFTCWNMKLQARETNYGARIDYVLITRGLLPWI 236
Query: 148 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL---- 203
KH G + L+GSDH P+++ L
Sbjct: 237 KH-----------------------------------GDIQASLKGSDHCPIFVDLHDEI 261
Query: 204 ----GEVPEIPQ-------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK----QGKSC 248
GE+ ++ P L++++ G Q L + KR ++ +
Sbjct: 262 TLESGELIKLSDAMKQKEGMQAPRLSAKFWEEFSGKQTMLSTFFGKRNSSQLQTFDETTA 321
Query: 249 KFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCR 308
FS LP + + ++ +G+ S+SN + T+TI N +
Sbjct: 322 NFSVPLPRSPQFSSSSVPLTD---------------EGMSISTSNSNAS---TETIRNSK 363
Query: 309 DSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVSHDDNNSI 367
+AS + S + K +K++ GQ + SFF K + + S +
Sbjct: 364 PLRLIASAPLKRKPSEKSFT-----SGSTKKRKAEAGQSKIASFFSKPTISKSQPKEVIV 418
Query: 368 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 427
D + + ++V S P S H + DY + EL + + + +
Sbjct: 419 LDEADSFPDAVPSCS-PPSTFPSSDHQLD----ADYRLAC-ELSATQVDLITQSEASQPN 472
Query: 428 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
N + W + ++ P C H EP V K GP G++F++C+R
Sbjct: 473 A----STSQNTSKNAWSDLFAPLQP--PRCVTHGEPAKLYTVNKQGPNKGKKFYICSRPV 526
Query: 488 GPA------------SNPEANCGYFKWA 503
GP N + C +FKWA
Sbjct: 527 GPGYDKGKGERPRDEVNHQYRCNFFKWA 554
>gi|41055919|ref|NP_956440.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Danio rerio]
gi|28278715|gb|AAH44527.1| Zgc:55889 [Danio rerio]
gi|182890762|gb|AAI65311.1| Zgc:55889 protein [Danio rerio]
Length = 558
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 115/282 (40%), Gaps = 68/282 (24%)
Query: 6 LIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGD 65
I +DG L ++ VI Y C + + EF L F + R E +L G + ++GD
Sbjct: 126 FIGQDG-LQKLTVINVY--CPRADPDKPERKEFKLQFYRLLQCRAEAILSSGSHVIILGD 182
Query: 66 LNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE----------------------SG 99
+N + ID CD PD F N R W L E SG
Sbjct: 183 VNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAENSENGNAADEPAEDFQESASG 240
Query: 100 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 159
G F D FR HP+R A+TCW + TGA Q NYGTRID+I +H+ V
Sbjct: 241 GKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI------------FSNHSLVKT 288
Query: 160 HVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG-EVPEIPQHSTPSLA 218
DI+ + +EGSDH PV+ L + P+ P +
Sbjct: 289 FFIGVDIMPE---------------------VEGSDHCPVWAQLSCTLQSSPR--CPPVC 325
Query: 219 SRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 260
+R++P G QQ L L K KQ S SLP ++
Sbjct: 326 TRHMPEFIGRQQKLSRFLFKIP-EKQNISNSSEKSLPGSQDA 366
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 404 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 442
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKAVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 503 A 503
Sbjct: 554 V 554
>gi|141447778|gb|ABO87600.1| DNA lyase [Coccidioides immitis]
Length = 606
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 183/495 (36%), Gaps = 94/495 (18%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEF 87
F +F + + R L G+R+ ++GD+NI+ ID +F +
Sbjct: 169 FRAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHIIEAIRKGKTTETEFLSSPS 228
Query: 88 RIWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
R F + LV GG+ DV R HP+R YTCW A NYG RID+
Sbjct: 229 RRLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDY 287
Query: 138 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHA 197
+LC+ +D + W + + L GSDH
Sbjct: 288 VLCS--------------------------VDMEDWFT--------ESNIQEGLMGSDHC 313
Query: 198 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 257
PVY + + T L P G+ + + R+ S SG L E
Sbjct: 314 PVYGIINDTVSCRNMDTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPE 365
Query: 258 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 317
+ +D + + + + L S + ++ ++++
Sbjct: 366 FHRRRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKG 425
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTS 371
+ N S RA+K + GQ +L SF + R + ++ S
Sbjct: 426 QPKRALENWTSLSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EI 482
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 431
LNV + + + + + PES + N S S++ + ++ + G+R +
Sbjct: 483 LNVPDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAI 531
Query: 432 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS 491
+ + A L +R + P C+GH EPC+ V KKPGP GR F++C R GP+
Sbjct: 532 SSAKESWAKLFTKR-------APPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSG 584
Query: 492 NPEAN----CGYFKW 502
N E C F W
Sbjct: 585 NKEIGTPWRCSTFIW 599
>gi|327261945|ref|XP_003215787.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Anolis
carolinensis]
Length = 530
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 90/212 (42%), Gaps = 42/212 (19%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSM 94
EF L F + R E LL G + ++GD+N A ID CD G F ++ R W
Sbjct: 157 EFKLRFYHLLQARAEALLRAGGHVVIMGDINTAHKPIDHCDPGDLESFQEHPGRNWLDGF 216
Query: 95 LVESGGS------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
L E G F D FR HP ++EAYTCW + TG+ NYGTRID+IL
Sbjct: 217 LWEPGKESPHGELFVDTFRFLHPTQKEAYTCWCNVTGSRHLNYGTRIDYIL--------- 267
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
+ L + K + + + GSDH PV L V
Sbjct: 268 ------------ADRALALSELK------------EAQLRPEVFGSDHCPVQAVLKSVC- 302
Query: 209 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
+ P L +R+LP G QQ L L+K E
Sbjct: 303 LGAPRCPPLCTRFLPEFAGTQQKLSRFLVKVE 334
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSI-TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV 400
SQ GQ+ L+ FF + D+ +DT + + E H +
Sbjct: 365 SQKGQVDLRHFFKGGNRTEGTDSAECQSDTYMGWRATEDSGKEPPGETARVDGHGGEEVA 424
Query: 401 TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE------WRRIQQLMETSI 454
++ V E+ SS+ ++ R +D ++ V L WR +
Sbjct: 425 SETQAPV-EIVREKSSIGVANE------RTVDCRKDGVTLKPTQSAALWRSLLP-GPARP 476
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H EPCV R VKKPG GRRF+VCAR G +S+P A C +F WA
Sbjct: 477 PLCKAHGEPCVLRTVKKPGANCGRRFYVCARPLGKSSDPRARCDFFLWA 525
>gi|303313137|ref|XP_003066580.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240106242|gb|EER24435.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 588
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 195/508 (38%), Gaps = 111/508 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F L F +++ +R L+ G+R+ V GDLNI+ AID A +F +
Sbjct: 141 FRLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPA 200
Query: 88 RIWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
RI F + LVE G +D+ RS P R YTCW A N+G RI
Sbjct: 201 RIIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARI 259
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D+ILC+ L ++++ + +++ GN Y S+ +GSD
Sbjct: 260 DYILCS---------LDMKDWMSIADIQEGLMV-------GNNFQYALYQADSS--QGSD 301
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CK 249
H PVY E + + G Q V+++ + E A+ S
Sbjct: 302 HCPVYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAAENSLSRSHLP 345
Query: 250 FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 309
SG L E N + D + SS+ S GE + +
Sbjct: 346 LSGRLIPEFNRRRNIRD------------------MFLRQSSTQNLSPGEINQNATSMSS 387
Query: 310 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVS 360
N ++ S+ I R +K+ L Q S++ FF+ K+SN++
Sbjct: 388 MTNKGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLA 447
Query: 361 HDDNNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 418
D +I D+ N N+S S P+++ P T + + V S +
Sbjct: 448 K-DCEAINDSVPNERKNDSGPGHRTSGISPPDANPDFEADPQTSQESTT--VSAVPSRIV 504
Query: 419 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 478
+ D D+E W +I + P C+GH+EPCV V KKPG GR
Sbjct: 505 A---DINVMSSIPDQE-------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKPGINRGR 552
Query: 479 RFFVCARAEGPASNPEAN----CGYFKW 502
F++C R GP+ N E C F W
Sbjct: 553 SFWICPRPLGPSGNKETGTQWRCPTFIW 580
>gi|152002960|gb|ABS19616.1| DNA lyase [Coccidioides immitis]
Length = 625
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 183/495 (36%), Gaps = 94/495 (18%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEF 87
F +F + + R L G+R+ ++GD+NI+ ID +F +
Sbjct: 188 FRAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPS 247
Query: 88 RIWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
R F + LV GG+ DV R HP+R YTCW A NYG RID+
Sbjct: 248 RRLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDY 306
Query: 138 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHA 197
+LC+ +D + W + + L GSDH
Sbjct: 307 VLCS--------------------------VDMEDWFT--------ESNIQEGLMGSDHC 332
Query: 198 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 257
PVY + + +T L P G+ + + R+ S SG L E
Sbjct: 333 PVYGIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPE 384
Query: 258 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 317
+ +D + + + + L S + ++ ++++
Sbjct: 385 FHRRRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKG 444
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTS 371
+ N + RA+K + GQ +L SF + R + ++ S
Sbjct: 445 QPKRALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EI 501
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 431
LNV + + + + + PES + N S S++ + ++ + G+R +
Sbjct: 502 LNVPDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAI 550
Query: 432 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS 491
+ + A L + + P C+GH EPC+ V KKPGP GR F++C R GP+
Sbjct: 551 SSAKESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSG 603
Query: 492 NPEAN----CGYFKW 502
N E C F W
Sbjct: 604 NKEIGTPWRCSTFIW 618
>gi|152002965|gb|ABS19620.1| DNA lyase [Coccidioides posadasii]
Length = 606
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 183/495 (36%), Gaps = 94/495 (18%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEF 87
F +F + + R L G+R+ ++GD+NI+ ID +F +
Sbjct: 169 FRAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPS 228
Query: 88 RIWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
R F + LV GG+ DV R HP+R YTCW A NYG RID+
Sbjct: 229 RRLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDY 287
Query: 138 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHA 197
+LC+ +D + W + + L GSDH
Sbjct: 288 VLCS--------------------------VDMEDWFT--------ESNIQEGLMGSDHC 313
Query: 198 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 257
PVY + + +T L P G+ + + R+ S SG L E
Sbjct: 314 PVYGIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPE 365
Query: 258 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 317
+ +D + + + + L S + ++ ++++
Sbjct: 366 FHRRRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKG 425
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTS 371
+ N + RA+K + GQ +L SF + R + ++ S
Sbjct: 426 QPKRALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EI 482
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 431
LNV + + + + + PES + N S S++ + ++ + G+R +
Sbjct: 483 LNVPDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAI 531
Query: 432 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS 491
+ + A L + + P C+GH EPC+ V KKPGP GR F++C R GP+
Sbjct: 532 SSAKESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSG 584
Query: 492 NPEAN----CGYFKW 502
N E C F W
Sbjct: 585 NKEIGTPWRCSTFIW 599
>gi|452825432|gb|EME32429.1| AP endonuclease 2 [Galdieria sulphuraria]
Length = 510
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 130/317 (41%), Gaps = 57/317 (17%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------GPDFAKNE 86
E+ F + R + +L G+ + V GD N A ID CD G F +
Sbjct: 167 FEYKYIFIERLLKRIKMVLEGGKNVVVCGDFNCARERIDHCDPEGIFQNKPRGSLFESDS 226
Query: 87 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R F +++ S G DVFR HPER +AYTCW + TGA + N+GTRID+I
Sbjct: 227 CRQLF-NVICSSEGPLVDVFRYFHPERLDAYTCWNNQTGARKTNFGTRIDYI-------- 277
Query: 147 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206
L + FV + CDI D + GSDH PVY+ +
Sbjct: 278 ----LANRAFVENFITNCDIFND---------------------IYGSDHCPVYIEFRSI 312
Query: 207 PEIPQHS-----TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 261
+ S P ++ P + G QQ+L ++ +++ KS K P +T
Sbjct: 313 VSLSAESLHVERLPPFCCQHFPDLLGSQQSLKDMM---KISIHDKSNKIVEMRPHFVEAT 369
Query: 262 GDTEDC-SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 320
C + D S + S +G Y + ++ F K+ D+ + +S+
Sbjct: 370 AFNRTCITMKSDTSTSEEGHSQ--EGKYDDTIRLPTKRNFEKSTSIEMDTFSNREYSSTV 427
Query: 321 QGSSNHISPFHVDRARK 337
GS N FHV + +K
Sbjct: 428 SGSEN---CFHVTKYQK 441
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
+WR++ ++ +PLC GH EPC+ R VKK G GR+F+VC R G E C +F
Sbjct: 445 DWRKLFHNLQ-KVPLCSGHNEPCLLRTVKKKGANLGRKFYVCGRPIGKGV--EGRCNFFL 501
Query: 502 W 502
W
Sbjct: 502 W 502
>gi|406868502|gb|EKD21539.1| DNA lyase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 633
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 128/526 (24%), Positives = 204/526 (38%), Gaps = 122/526 (23%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
EF + F +++ R L+ G+R+F GDLNI ID +AG K
Sbjct: 163 EFRIGFLNAVEARVRNLVAAGKRVFWTGDLNIIREEIDTANAGEQLRKQGITVEEYLSTP 222
Query: 88 -RIWFRSMLVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R +LV+ G F +D+ RS HP R +TCW A N+G+R
Sbjct: 223 ARRMLNQLLVD-GKVFGERDEGREKPIMWDICRSFHPNRLGMFTCWEQKINARPGNFGSR 281
Query: 135 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGS 194
ID++LC+ D+K W + + L GS
Sbjct: 282 IDYVLCSQ--------------------------DWKDW--------FCESNIQEGLMGS 307
Query: 195 DHAPVYMCLGEVPEIPQ---HSTPSLASRYLPIIRGVQQ-------------TLVSVLMK 238
DH PVY L E EI H ++S G++Q L+
Sbjct: 308 DHCPVYAVLKEKVEIEGKEVHVRDIMSSGMFK--DGLRQREWSAKDLLPMSARLIPEFNH 365
Query: 239 REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL--QGVYCSSSNQES 296
R + + K SL A NS T+ + V +L D G+L +G S S ++
Sbjct: 366 RRSIRDMFTKK--SSLTASDNSLS-TQGAQDEVGTALP---DRGLLTSKGAMASVSTLQA 419
Query: 297 EGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK--------------KS 342
+ E T+ + + V+ ++I + P R + + +S
Sbjct: 420 KPEVTEDLTAV--TTTVSQTTSIQSSAKPPKRPIESPTTRPQKRGKPSTSSKSTTSKAQS 477
Query: 343 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
GQ SL FF K N+SI D S T T +S + +PES + P +
Sbjct: 478 GKGQSSLMGFF-KSKQPQDSQNSSIIDA-----KSDTATMISIDTLPESSDLAP--PAKE 529
Query: 403 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHK 461
+ ++ ++ + D+K + +A+ + W ++ L + +P C+ H
Sbjct: 530 EPPATQSSENLSPNLAFNPADQK-------SVHDPIAVKDSWSKL--LGKRVVPRCE-HD 579
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
+PC++ + KK G GR F++C R GP+ E N CG F W+
Sbjct: 580 DPCISHITKKGGENCGRSFYMCPRPLGPSGKKEKNTEWRCGTFIWS 625
>gi|167555152|ref|NP_001107928.1| uncharacterized protein LOC797209 [Danio rerio]
gi|160773435|gb|AAI55114.1| LOC797209 protein [Danio rerio]
Length = 558
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 102/251 (40%), Gaps = 65/251 (25%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFR 92
EF L F + R E +L G + ++GD+N + ID CD PD F N R W
Sbjct: 154 EFKLQFYRLLQCRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLD 211
Query: 93 SMLVE----------------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN 130
L E SGG F D FR HP+R A TCW + TGA Q N
Sbjct: 212 QFLFETAENSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNALTCWSTLTGARQTN 271
Query: 131 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTR 190
YGTRID+I +H+ V DI+ +
Sbjct: 272 YGTRIDYI------------FSNHSLVKTFFIGVDIMPE--------------------- 298
Query: 191 LEGSDHAPVYMCLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK 249
+EGSDH PV+ L + P+ P + +R++P G QQ L L+K KQ S
Sbjct: 299 VEGSDHCPVWAQLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLVKIP-EKQNISNG 355
Query: 250 FSGSLPAESNS 260
SLP ++
Sbjct: 356 SEKSLPGSQDA 366
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 404 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 442
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKSVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 503 A 503
Sbjct: 554 V 554
>gi|320036533|gb|EFW18472.1| DNA lyase [Coccidioides posadasii str. Silveira]
Length = 600
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 186/508 (36%), Gaps = 127/508 (25%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F L F +++ +R L+ G+R+ V GDLNI+ AID A +F +
Sbjct: 169 FRLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPA 228
Query: 88 RIWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
RI F + LVE G +D+ RS P R YTCW A N+G RI
Sbjct: 229 RIIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARI 287
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D+ILC+ +D K W + L GSD
Sbjct: 288 DYILCS--------------------------LDMKDWMS--------IADIQEGLMGSD 313
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CK 249
H PVY E + + G Q V+++ + E A+ S
Sbjct: 314 HCPVYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAAENSLSRSHLP 357
Query: 250 FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 309
SG L E N + D + SS+ S GE + +
Sbjct: 358 LSGRLIPEFNRRRNIRD------------------MFLRQSSTQNLSPGEINQNATSMSS 399
Query: 310 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVS 360
N ++ S+ I R +K+ L Q S++ FF+ K+SN++
Sbjct: 400 MTNKGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLA 459
Query: 361 HDDNNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 418
D +I D+ N N+S S P+++ P T + + V S +
Sbjct: 460 K-DCEAINDSVPNERKNDSGPGHRTSGISPPDANPDFEADPQTSQESTT--VSAVPSRIV 516
Query: 419 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 478
+ D D+E W +I + P C+GH+EPCV V KKPG GR
Sbjct: 517 A---DINVMSSIPDQE-------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKPGINRGR 564
Query: 479 RFFVCARAEGPASNPEAN----CGYFKW 502
F++C R GP+ N E C F W
Sbjct: 565 SFWICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|449662096|ref|XP_002160726.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Hydra
magnipapillata]
Length = 516
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 119/506 (23%), Positives = 181/506 (35%), Gaps = 129/506 (25%)
Query: 7 IVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDL 66
+ DG L I+ + C ++ + + + + F + R L+ + R I VVGDL
Sbjct: 128 VTSDGQRLCIINV----YCPRADVEEKERFHYKMCFYRLLQMRIISLMREKRNIIVVGDL 183
Query: 67 NIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF----------DVFRSKHPERREA 116
N++ ID CD DF + R W S++ G F D FR HP + A
Sbjct: 184 NVSHKRIDSCDPCEDFEDSPARKWLDSIIDFKGSESFSEKNVNNFLVDTFRIFHPNEQNA 243
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 176
YTCW + T A + N+GTRID IL H T N C IL D
Sbjct: 244 YTCWNTQTRARETNFGTRIDFILA------------DHQLCTVLTN-CVILAD------- 283
Query: 177 NAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL 236
++GSDH PV + + + P + ++P I G Q + S
Sbjct: 284 --------------VQGSDHCPVVADFNILLK-ASNLIPKTCAAFMPEIFGKQSDIKS-- 326
Query: 237 MKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQES 296
F S ES+ G + R LN+ +S Y N +
Sbjct: 327 -------------FFSSKRFESDREG--------IKRKLNDSTESRF----YKKKKNVDQ 361
Query: 297 EGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKR 356
+ K + +++ +HS S+H+ + + ++ S+L L L
Sbjct: 362 DFSIIKYFK----ASDTENHS-----RSSHVEISNFQSSTEEISCSRLSNLELS------ 406
Query: 357 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSS 416
N S + I D S +V + S + V K T+ L G S+
Sbjct: 407 HNSSSSNFAYIIDNSNMNYYAVKEASSFESAVLYESSMKQKTENTNKEIWKKILKGPEST 466
Query: 417 VCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF 476
H EK R + K+ NN F
Sbjct: 467 PLCHGHKEKAVLRTVKKQGNN--------------------------------------F 488
Query: 477 GRRFFVCARAEGPASNPEANCGYFKW 502
GR+F+ C++ G +SN A CG+F W
Sbjct: 489 GRQFYACSKPVGSSSNKNAGCGFFVW 514
>gi|225558763|gb|EEH07047.1| DNA lyase Apn2 [Ajellomyces capsulatus G186AR]
Length = 636
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 125/510 (24%), Positives = 189/510 (37%), Gaps = 98/510 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L G+R+ V GDLNI+ + ID A +F +
Sbjct: 174 FRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEFVSSPV 233
Query: 88 RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV+ G D+ R HP+R YTCW A NYG RI
Sbjct: 234 RRIF-NQLVDGGKVIGDRDHGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARI 292
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC +Q F ++ E L GSD
Sbjct: 293 DYVLC-------DRSMQDW-FSASNIQEG--------------------------LMGSD 318
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 255
H PVY L + + S + L I+ + T + KRE + + SG L
Sbjct: 319 HCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSGRLI 371
Query: 256 AESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVA 314
E +D RS N Y SG GV S Q++ + + + + + +
Sbjct: 372 PEFCQRRSIKDMLFQ-QRSQNGYQGSGNAAGGVGIPISAQKASSDISLSAIGRSNIPSPS 430
Query: 315 SHSTITQGSSNHIS-PFHVDRAR----KKAKKSQ--------LGQLSLKSFFHKRSNVSH 361
S T N P D K+ K+S+ GQ +LK FF ++
Sbjct: 431 STPIATSAEPNTPKRPQKADDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKTT--- 487
Query: 362 DDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS-- 419
+ T S + N + +S + E + K P C H+ +G S +
Sbjct: 488 ---SCTTVASADDENDHSKSSATAEGGSPQKGTAIKPPCPSGDCCDHQENGCQQSQTAGP 544
Query: 420 --HDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 477
+D+D+ R D N + W ++ + P C GH EPC++ V KK G G
Sbjct: 545 PAYDRDDDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKAGINRG 599
Query: 478 RRFFVCARAEGPA----SNPEANCGYFKWA 503
R F++C+R GP + + C F W+
Sbjct: 600 RSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|354476041|ref|XP_003500233.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus
griseus]
gi|344246210|gb|EGW02314.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDAG F ++ R W
Sbjct: 166 RLSFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDAGSMECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP++ +A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGMEAGSQTGLFMDSYRCFHPKQEKAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRTLVIDTFQ-----------TSFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCMPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 424 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 483
E+K K K+ V W+ + + +PLC GH+EPCV R VKK GP GR F++C
Sbjct: 436 EEKAKVSEAKDEKEVRTSFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNLGRHFYMC 494
Query: 484 ARAEGPASNPEANCGYFKWA 503
AR GP S+P + C +F W+
Sbjct: 495 ARPRGPPSDPSSRCNFFLWS 514
>gi|393240732|gb|EJD48257.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 613
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 90/223 (40%), Gaps = 59/223 (26%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRI 89
++ F +F + R L +GR I VVGD+NI +D CD F + E R+
Sbjct: 169 RIPFKANFHRLLGERLRILRTEGREIIVVGDINICSTPLDHCDFTLPSTHETFFERETRV 228
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W R +L E G F DV R HP R+ YTCW + A + NYGTRID+ILC +
Sbjct: 229 WMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARESNYGTRIDYILCTSGLVP--- 284
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM-------- 201
W G G + ++GSDH PVY+
Sbjct: 285 -----------------------WMKG--------GDIQASVKGSDHCPVYVDLHDEIVG 313
Query: 202 ----------CLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 234
+ ++PE P P LA+ Y + Q L S
Sbjct: 314 EDRNVVKLRDAMKQIPE-PHAPPPRLAACYWDVFSTRQTVLGS 355
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 496
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 497 CGYFKWA 503
C YFKW
Sbjct: 583 CDYFKWG 589
>gi|393240753|gb|EJD48278.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 75/174 (43%), Gaps = 40/174 (22%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRI 89
++ F +F + R L +GR I VVGD+NI +D CD F + E R+
Sbjct: 169 RIPFKANFHRLLGERLRILRAEGRGIIVVGDINICSTPLDHCDFTLPSTHETFFERETRV 228
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W R +L E G F DV R HP R+ YTCW + A NYGTRID+ILC L
Sbjct: 229 WMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARDSNYGTRIDYILCTSGLLP--- 284
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
W G G + ++GSDH PVY+ L
Sbjct: 285 -----------------------WMKG--------GDIQASVKGSDHCPVYVDL 307
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 496
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 497 CGYFKW 502
C YFKW
Sbjct: 583 CDYFKW 588
>gi|148227204|ref|NP_001086779.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
laevis]
gi|50415222|gb|AAH77433.1| Apex2-prov protein [Xenopus laevis]
Length = 517
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 95
+ L F + R E +L G + ++GD+N + +D CD F +N R W L
Sbjct: 156 YKLRFYHLLQTRAEAILQNGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFL 215
Query: 96 VE-----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
+ G F+D FR HP ++ A+TCW S +GA Q NYGTRID+I
Sbjct: 216 GDPIPSQKGDSETVMPPSAGSGLFYDSFRYFHPTQKNAFTCWCSASGARQTNYGTRIDYI 275
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
L +L F+ D +I +EGSDH P
Sbjct: 276 L-------GNRELVESEFL-------DSVI-------------------MPEVEGSDHCP 302
Query: 199 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V + P I + P L ++YLP G QQ L+ L+K+E
Sbjct: 303 VKAFMKCQP-IAANKCPPLCTKYLPEFAGRQQKLLQFLVKKE 343
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507
P CKGH EPCV R VKK GP GR+F+VCAR EG +SNP+A C +F W K+
Sbjct: 461 PNCKGHSEPCVLRTVKKAGPNCGRQFYVCARPEGHSSNPQARCNFFLWLTKKA 513
>gi|302664446|ref|XP_003023853.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
gi|291187871|gb|EFE43235.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
Length = 588
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 198/512 (38%), Gaps = 107/512 (20%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F L F + + R L+ G+R+ + GDLN ID A K E+
Sbjct: 133 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYP 192
Query: 88 --RIWFRSML----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
RI+ R + ES D+ R HP R YTCW A NYG+RI
Sbjct: 193 ARRIFNRLVRPVGSTGDTHDTESPPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGSRI 252
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDIL-IDYKRWKPGNAPSYRWKGGMSTRLEGS 194
D+ILC+ +++S FV ++ E I+ + + P + + +GS
Sbjct: 253 DYILCS-------DNIRSW-FVESNIQEGLIVCVKFGLISPS------FNNLLIPNEQGS 298
Query: 195 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR----EVAKQGKSCK- 249
DH PVY +G+ +P G ++ ++ + + +Q +S K
Sbjct: 299 DHCPVYASIGD--RVP--------------FDGKDVHILDIMNPKGTFDDGVEQPRSNKI 342
Query: 250 ----FSGSLPAESNSTGDTEDCSENVDRSLNNY-----CDSGILQGVYCSS-SNQESEGE 299
SG L E + + +D N S NN + L G ++Q +
Sbjct: 343 TPLALSGRLIPEFDRRRNIKDMFRNHSLSRNNSEVKMSTTTDTLAGSEIPGPASQTKSAQ 402
Query: 300 FTKTIENCRDSANVASHSTITQGS-SNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN 358
KT + A SHST Q S + P + R +S GQ +L FF
Sbjct: 403 ENKTARVTMNHAPKRSHSTGVQAPPSKRLKP----KGRPSGARSN-GQQTLVGFFKSERT 457
Query: 359 ---VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNS 415
VS ++ + +D+ V T S E+ + +++ +P T + S NS
Sbjct: 458 SRAVSEENATASSDSPQEAPAEVKITPAS--ELASTAQNNDSVP-TAVTTSPD-----NS 509
Query: 416 SVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
V S E K F K +P C+GH E C++ V KKPG
Sbjct: 510 VVPSCSPTESWSKVFTRK-------------------PVPKCEGHHEDCISLVTKKPGIN 550
Query: 476 FGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ + E+ C F W+
Sbjct: 551 CGRSFWICPRPLGPSGDKESGTPWRCPTFIWS 582
>gi|120586985|ref|NP_001073361.1| uncharacterized protein LOC317628 [Rattus norvegicus]
gi|119850781|gb|AAI27531.1| Similar to apurinic/apyrimidinic endonuclease 2 [Rattus norvegicus]
gi|149031345|gb|EDL86343.1| rCG38932, isoform CRA_a [Rattus norvegicus]
Length = 516
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 166 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRSLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVLN- 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 388
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 373 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 430
Query: 389 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 448
NK+P +DEK+ V W+ +
Sbjct: 431 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 459
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 460 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|392864132|gb|EAS35062.2| exodeoxyribonuclease III (xth) [Coccidioides immitis RS]
Length = 600
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 124/517 (23%), Positives = 182/517 (35%), Gaps = 145/517 (28%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F L F +++ +R L+ G+R+ V GDLNI+ ID A +F +
Sbjct: 169 FRLGFLNALDHRIRNLISLGKRVVVAGDLNISRDEIDSAHALEQIRKSRLTTDEFLSSPA 228
Query: 88 RIWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
RI F + LVE G +D+ RS P R YTCW A N+G RI
Sbjct: 229 RIIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARI 287
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D+ILC+ +D K W + L GSD
Sbjct: 288 DYILCS--------------------------LDMKDWMS--------IADIQEGLMGSD 313
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CK 249
H PVY E + + G Q V+++ + E A S
Sbjct: 314 HCPVYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAADNSLSRSHLP 357
Query: 250 FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD 309
SG L E N + D + SS+ S GE + +
Sbjct: 358 LSGRLIPEFNRRRNIRDMF------------------LRQSSTQNPSPGEINQNATSMSR 399
Query: 310 SANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVS 360
N ++ S+ I R +K+ L Q S++ FF K+SN++
Sbjct: 400 MTNKGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFSPRQPRLKQSNLA 459
Query: 361 HD---DNNSITDTSLNVNN--------SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE 409
D N+S+ + N + S D S E P++ S + +
Sbjct: 460 KDCEAINDSVPNERKNDSGPGHRTSGISPPDASPDFEADPQTSQESTTV----SAVPSRI 515
Query: 410 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 469
+ G+N +Q+ W +I + P C+GH+EPCV V
Sbjct: 516 VAGINVMSSIPEQE------------------SWNKI--FKKRPPPRCEGHEEPCVRLVT 555
Query: 470 KKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
KKPG GR F++C R GP+ N E C F W
Sbjct: 556 KKPGINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|395546227|ref|XP_003774991.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Sarcophilus
harrisii]
Length = 548
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 92/210 (43%), Gaps = 41/210 (19%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD---FAKNEFRIWF 91
+L + L F + R E LL G + ++GD+N + +D CD PD F +N R W
Sbjct: 153 RLTYKLRFYRLLQLRAEALLRTGSHVIILGDVNTSHQPLDHCDP-PDLACFEENPGRQWL 211
Query: 92 RSMLVESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
L G F D FR HP + A+TCW + TGA NYGTR+D+IL
Sbjct: 212 TQFLWRPDGENGLFVDSFRHFHPTKVGAFTCWSTATGARLTNYGTRLDYILG-------- 263
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
+ +L +++ S+ + +EGSDH PV L
Sbjct: 264 -------------DRALVLGEFED-------SF-----LMPEVEGSDHCPVGATL-RAEL 297
Query: 209 IPQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
IP P L +RYLP G QQ L L+K
Sbjct: 298 IPAPRCPPLCTRYLPEFAGRQQKLSRFLVK 327
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
PLCKGH EPCV R V+K GP FGR+F+VC+R G + NP A C +F W
Sbjct: 427 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHSGNPVARCDFFLW 474
>gi|242813026|ref|XP_002486082.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
gi|218714421|gb|EED13844.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
Length = 642
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 182/515 (35%), Gaps = 112/515 (21%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID--------RCDAGPD--FAKNE 86
+F F + + R L+ G+R+ V GDLNI+ ID R G + F +
Sbjct: 185 DFRQGFINLLDARIRNLVSMGKRVIVTGDLNISVGEIDSAHLTEAIRKGTGSEDEFVSSP 244
Query: 87 FRIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F + LVE D+ RS HP RR YTCW + A NYG R
Sbjct: 245 VRRVF-NQLVEGAKVVGQRDPAREVPVLHDICRSFHPGRRGMYTCWETRVNARPGNYGAR 303
Query: 135 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW-KGGMSTRLEG 193
ID+IL + +D K W W + + L G
Sbjct: 304 IDYILSS--------------------------LDMKDW---------WSEANIQEGLMG 328
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPI--IRGVQQTLVSVLMKREVAKQGKSCKFS 251
SDH PVY + SL + I I + + +RE + + S
Sbjct: 329 SDHCPVYATFKD--------KISLEGNEIDIKDIMNPPGVFKNGIRQREYSTK-DLLPLS 379
Query: 252 GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 311
G L E +D S + I V S+ E T + E + +
Sbjct: 380 GRLIPEFTQRRSIKDMFTRKPSSSLKDSVTPITNVVDEESAPTPPESTITNSAEPFQSPS 439
Query: 312 NVA---SHSTITQGSSNHIS-----------PFHVDRARKK--AKKSQLGQLSLKSFFHK 355
+ S + SSN +S P ++R K + GQ SL FF
Sbjct: 440 KPGLYKTQSNASNASSNGLSKRTRKESAPAPPPKRSKSRGKLDTNTTSKGQQSLIGFFKP 499
Query: 356 RSNVSHDDNNS---ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 412
+ + D N+ I+D L+ +++ T + +P H + +
Sbjct: 500 KKTQDNQDTNTTQEISDRGLDGAFTISPTKSISQVLPSPHKPT----------PTSQTTA 549
Query: 413 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
+ + DE + KE W ++ + + P C+ H+EPC+ KKP
Sbjct: 550 QDDGSTTESTDETVIDPIVSKE-------SWSKL--FTKKATPKCEEHQEPCIMLTTKKP 600
Query: 473 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
G GR F++C+R GP E C F WA
Sbjct: 601 GINCGRAFWMCSRPLGPTGQKEKGTQWRCKTFIWA 635
>gi|164429579|ref|XP_964325.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
gi|157073536|gb|EAA35089.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
Length = 630
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 122/553 (22%), Positives = 204/553 (36%), Gaps = 153/553 (27%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----- 89
++EF +F +M R L+ G+ +F+ GDLNI +D K +
Sbjct: 140 RIEFRQAFIDAMDARVRNLVSLGKEVFLCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFIS 199
Query: 90 ----WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F + +V G +D+ R HP+R YTCW + A N+G+
Sbjct: 200 TPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPKRPGMYTCWETRKNARPGNFGS 259
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ FV ++ E L G
Sbjct: 260 RIDYVLCSSGIKDW--------FVDANIQEG--------------------------LLG 285
Query: 194 SDHAPVYMCLGE--------VP------------------EIPQHSTPSLASRYLPIIRG 227
SDH PVY + + +P E Q ++R +P
Sbjct: 286 SDHCPVYATISDSVRRDGVIIPITDIMNPEGMFKNGQRQREWSQKDCLPTSARLIPEF-D 344
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGV 287
+Q++ + +K+ K + P + D++D S++ + S + +LQG
Sbjct: 345 RRQSIKDMFVKK---------KTPSNTPKSATPAADSQDISDSPNTSSITVNATTVLQGT 395
Query: 288 YCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK------- 340
S+S+ S ST T + + SP RA + A
Sbjct: 396 ASSASSPR----------------QWLSQSTATDPALSQTSPVPKRRAEQPAPYTRPPKK 439
Query: 341 ---------KSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDTSLS 384
S+ G Q +L F ++ V+ D+ + + + + + +T+L
Sbjct: 440 AKAALAKQPSSKTGPGPSQSTLMGFIKAKTPTPTVNPDERHGPINGNNHSPVTAAETALR 499
Query: 385 QEEV------PESHHHSNKIPVTDYSCSVHEL----HGVNSSVCSHDQDEKKGKRFLDKE 434
E P+ + + D + H+ +G NS+ +DE KGK D
Sbjct: 500 NEPFTAKGSQPKQAFEAGNVEEWDGNAVEHKTNSTTYGENSTAM---EDEGKGKTIFDPI 556
Query: 435 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 494
+N V+ W ++ L + +P C+ H E C + V KKPG GR F++CAR GP+ N E
Sbjct: 557 QNKVS---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCARPLGPSGNKE 610
Query: 495 AN----CGYFKWA 503
C F W+
Sbjct: 611 TGTEFRCKTFIWS 623
>gi|26354044|dbj|BAC40652.1| unnamed protein product [Mus musculus]
Length = 523
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 173 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 232
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 233 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 286
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 287 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 318
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 319 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 353
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 380 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 438
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P + ++KG+R A W+ +
Sbjct: 439 TMLEEKNKVP---------------------ESKDEKGER--------TAF--WKSMLS- 466
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 467 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 520
>gi|73921677|sp|Q68G58.1|APEX2_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|51259055|gb|AAH78633.1| Apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 516
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 166 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P +DEK ER W+ +
Sbjct: 432 TVLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|148675568|gb|EDL07515.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_c [Mus musculus]
Length = 543
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 193 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 252
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 253 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 306
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 307 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 338
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 339 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 373
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 400 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 458
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P + ++KG+R W+ +
Sbjct: 459 TMLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 486
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 487 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 540
>gi|148675569|gb|EDL07516.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_d [Mus musculus]
Length = 530
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 180 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 239
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 240 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 293
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 294 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 325
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 326 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 360
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 387 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 445
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P + ++KG+R W+ +
Sbjct: 446 TMLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 473
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 474 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 527
>gi|21541818|ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus]
gi|19912820|dbj|BAB88654.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|22830557|dbj|BAC11807.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|26341548|dbj|BAC34436.1| unnamed protein product [Mus musculus]
gi|148675566|gb|EDL07513.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_a [Mus musculus]
Length = 516
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 166 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P +DEK ER W+ +
Sbjct: 432 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|148675567|gb|EDL07514.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_b [Mus musculus]
Length = 402
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 52 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 111
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 112 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 165
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 166 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVLN- 197
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 198 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 232
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 348 SPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 399
>gi|354503214|ref|XP_003513676.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cricetulus griseus]
gi|344248357|gb|EGW04461.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDAG F ++ R W
Sbjct: 166 RLTFKMHFYRLLQIRAEALLAAGCHVIILGDLNTAHRPIDHCDAGSLECFEEDPGRKWLD 225
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ++G G F D +R +P++ A+TCW TGA FNYG R+D++L
Sbjct: 226 GLLSDLECQTGSHIGPFMDSYRYFYPKQEGAFTCWSVITGARHFNYGARLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + ++GSDH PV L
Sbjct: 280 ----------------GDRTLIIDTFQ-----------AAFLLPEVKGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
+ +P P+L +R+LP G Q ++ L+
Sbjct: 312 MSCVPAKQCPALCTRFLPEFSGTQLKILGFLV 343
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
+++ V L W+ + + PLC+GHKEPCV R+VKKPGP GR F++CAR +GP +
Sbjct: 445 EDKKVVQTLFWKSVLS-GPSPAPLCRGHKEPCVMRIVKKPGPNMGRHFYICARPQGPPDD 503
Query: 493 PEANCGYFKW 502
P ++C +F W
Sbjct: 504 PSSSCNFFLW 513
>gi|301114885|ref|XP_002999212.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
gi|262111306|gb|EEY69358.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
Length = 482
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 100/242 (41%), Gaps = 64/242 (26%)
Query: 19 ILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 78
+L + C L R LE+ L F + R L +R+ VVGD+NIA ID CD
Sbjct: 136 VLLNTYCPALASADR--LEYKLQFHGLLEDRVNALRAANKRVIVVGDINIAHREIDHCDP 193
Query: 79 ------GPDFAKNEFRIWFRSMLVESGGSFF------------------DVFRSKHPERR 114
G F + R W S + SG + D +R HP++
Sbjct: 194 HAHRDDGSSFGDHPCRKWMDSFVGVSGEKYLPNPHSDDIVDGEPAVKMIDTYRHFHPDQT 253
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
+AYTCW + TGA Q NYGTRID+IL A P F+ C V+ C ID +R
Sbjct: 254 KAYTCWNTQTGARQTNYGTRIDYIL-ADP-----------TFIEC-VSSCS--IDAERL- 297
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYM-CLGEVPEIPQHS---TPSLASRYLPIIRGVQQ 230
GSDH PV M C E+ + T +L +R G QQ
Sbjct: 298 ------------------GSDHCPVLMSCTVELETSSSTNTGITAALCARNFAEFSGTQQ 339
Query: 231 TL 232
++
Sbjct: 340 SI 341
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 441 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 500
LEW ++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 410 LEWAQVLNGRPPPTPLCHC-GQPTVLRSVIKTNENWGRKFYVCTKPAGEKGNPDARCDFF 468
Query: 501 KWAFSKSKQK 510
KW K +K
Sbjct: 469 KWVDKKGTKK 478
>gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/519 (21%), Positives = 188/519 (36%), Gaps = 130/519 (25%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 157 RIEFRQSFVEALEARIRNLVAAGKQVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQS 216
Query: 91 --FRSML---------------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L G +D+ R HP RR +TCW + N G+
Sbjct: 217 MPTRRILNQLLFDGSVIGPRDKAREDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGS 276
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 277 RIDYILCS--------DGIKDWFVDSNIQEG--------------------------LMG 302
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCK--- 249
SDH PVY + + +++G ++T L +L + + G+ +
Sbjct: 303 SDHCPVYATMRD-----------------KVVKGGKETSLAEILNPANMFRDGQRIRNWE 345
Query: 250 ------FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKT 303
S L E + + D N ++ + D G G + + E + T
Sbjct: 346 QRDALALSAKLIPEFDRRRNIRDMFTN--KAAHASFDRGNKTG--SGARDGEDMTQLGTT 401
Query: 304 IENCRDSANVA-------SHSTITQGSSNHISPFHVD-RARKKAK-------KSQLGQLS 348
+ + +V ++Q + H P V A KK+K K GQ +
Sbjct: 402 MPRLQSEGSVGVERERERERERVSQ-NKRHAGPAQVGIPANKKSKGSSDTKTKVASGQTT 460
Query: 349 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH 408
L+ FF +S + V L+ V S + P + +V
Sbjct: 461 LQGFFKPKSTATAGGQGGPLAGPCQVPGRAQTPPLTTRTV------SRQTPTSSQMVTVK 514
Query: 409 ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARV 468
+ ++ GK F E A W ++ L +P C+ H+EPC++ V
Sbjct: 515 PV-----------EENSSGKVFDPIE----AKESWSKL--LGRRVVPKCE-HEEPCISLV 556
Query: 469 VKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
KKPG GR F++C R GP+ + E + CG F W+
Sbjct: 557 TKKPGVNCGRSFYICPRPVGPSGDKERDTEWRCGTFIWS 595
>gi|12862077|dbj|BAB32346.1| unnamed protein product [Mus musculus]
Length = 385
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F + R W
Sbjct: 166 RLTFKMRFYRLLQMRAEPLLAAGSHVIILGDLNTAHRPIDHCDASSLECFEXDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
>gi|145346298|ref|XP_001417629.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577856|gb|ABO95922.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 474
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 43/207 (20%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPA-AIDRCDAGPDFA--KNEFRIWFRSM 94
F F S++ R++ L +GR + + GD NIAP+ +DR D P+ +N R W +
Sbjct: 143 FKRDFLSALEARYKSLRERGRNVILCGDWNIAPSWKLDRADEDPNAVEPRNPSRDWLAAQ 202
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L +G + DVFR P +A+TCW +GA+ NYG+RID+ L
Sbjct: 203 L--AGDAMVDVFREFFPTLGDAFTCWNVASGAQLSNYGSRIDYFL--------------- 245
Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV---PEIPQ 211
CD + KR + G++ + EGSDHAPVY+ L E Q
Sbjct: 246 ---------CDRAVTLKRVR---------GVGVAQKFEGSDHAPVYLELEESMWRRRDSQ 287
Query: 212 HSTPSLASRYLPIIRGVQQTLVSVLMK 238
+ PSLA L G Q T+ S+ +
Sbjct: 288 QTPPSLAISML--YPGRQTTVDSIFAR 312
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 446 IQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+ + + P CK H E C R VKK P GR FF C R G +NP+ +CG+F W
Sbjct: 411 MNTFAKMAPPKCK-HGETCKVRTVKKKESPHCGRVFFCCPRPAGARTNPDCDCGFFLW 467
>gi|432099379|gb|ELK28619.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 512
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 46/222 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 164 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 223
Query: 93 SMLVE---SGGS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L + GGS F D +R HP++ A+TCW + TGA + NYG+RID++
Sbjct: 224 GLLSKLDCQGGSHVGAFIDTYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------- 276
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L VT + +L + + GSDH PV L
Sbjct: 277 -----LGDRTLVTDTFQDSFLLPE---------------------VMGSDHCPVGAVL-N 309
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM---KREVAKQ 244
V +P P L +R+LP G Q ++ L+ + V+KQ
Sbjct: 310 VSSVPAKQCPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSKQ 351
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+P+C GH EPCV R VKK GP GR F++C+R GP+++P + C +F W+
Sbjct: 460 MPVCGGHGEPCVMRTVKKAGPNQGRHFYMCSRPRGPSTDPSSRCNFFLWS 509
>gi|307752095|gb|ADN93066.1| putative DNA lyase [Arthroderma benhamiae]
Length = 588
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 133/515 (25%), Positives = 200/515 (38%), Gaps = 113/515 (21%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F L F + + R L+ G+R+ + GDLN ID A K E+
Sbjct: 133 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYP 192
Query: 88 --RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
RI+ R LV GS D+ R HP R YTCW A NYG+
Sbjct: 193 ARRIFNR--LVRPVGSTGDTHDTETPPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGS 250
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYR-WKGGMSTRLE 192
RID+ILC+ +++S FV ++ E I+ +YR +K + + +
Sbjct: 251 RIDYILCS-------DNIRSW-FVESNIQEGLIVCVKLEL------TYRSFKNLLISNEQ 296
Query: 193 GSDHAPVYMCLGE-VP------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG 245
GSDH PVY + + VP I P A GV+Q + ++
Sbjct: 297 GSDHCPVYASISDRVPFDGKDVHILDIMNPKGA-----FDDGVEQPRSNKIVP------- 344
Query: 246 KSCKFSGSLPAESNSTGDTED-------CSENVDRSLNNYCDSGILQGVYCSSSNQESEG 298
SG L E + + +D N + ++ D+ + +S +S
Sbjct: 345 --LALSGRLIPEFDRRRNIKDMFRNHSLSQTNSEVKMSTTTDTQAGSEIPGPASQIKSAQ 402
Query: 299 EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK 355
E KT + A SHST Q S+ R ++K + S GQ +L FF
Sbjct: 403 E-NKTAPVTMNHAPKRSHSTGAQAPSSK-------RPKQKGRPSGARSNGQQTLVGFFKS 454
Query: 356 RSN---VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 412
VS ++ + +D+ V T S E+ + +++ IP T + S
Sbjct: 455 EKTSRAVSEENATASSDSPQEAPAEVKITPAS--ELASTAENNDSIP-TAVTASPD---- 507
Query: 413 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
NS V S E K F K +P C+GH E C++ V KKP
Sbjct: 508 -NSIVPSCSPTESWSKVFTRK-------------------PVPKCEGHHEDCISLVTKKP 547
Query: 473 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
G GR F++C R GP+ + E+ C F W+
Sbjct: 548 GINCGRSFWICPRPLGPSGDKESGTPWRCPTFIWS 582
>gi|258573517|ref|XP_002540940.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
gi|237901206|gb|EEP75607.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
Length = 499
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 120/512 (23%), Positives = 186/512 (36%), Gaps = 151/512 (29%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI---------APAAIDRCDAGP-DFAKNEF 87
F F +++ R L+ G+R+ V+GDLN+ A AI +C +F +
Sbjct: 84 FRSDFLNALDMRVRNLIAIGKRVIVMGDLNVSSDILDSAHAIEAIRKCKLTELEFLSSPP 143
Query: 88 RIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R+ F + LV+ G D+ R+ HP R+ YTCW A NYG RID
Sbjct: 144 RLLF-NQLVKGGKPGTHEIEQKPQVLLDLCRNFHPNRQGMYTCWEQRINARPGNYGARID 202
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D + W + W + L GSDH
Sbjct: 203 YVLCS--------------------------MDMEDW-------FVW-SDIQEGLMGSDH 228
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG--------KSC 248
PVY + + RY R +++ ++ V G S
Sbjct: 229 CPVYALIKDT------------VRY----RDADRSIWDIVNPPGVFHAGLRKQPAILTSL 272
Query: 249 KFSGSLPAESNS--------TGDTEDCSENVDRSLNNYCDSGILQGVYCSSS--NQESEG 298
SG L E + + SE + R+ + + LQ + S N +G
Sbjct: 273 PLSGRLIPEFHRRRSLKEMFQAKSTPASELMGRAPDLPHNPRSLQQLKSPDSAWNDGVKG 332
Query: 299 EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN 358
A+ A + T + +N ISP V R+RK
Sbjct: 333 ------------ASTADYQTAKRTPANKISPRPVKRSRK--------------------- 359
Query: 359 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 418
+ DTS N+ S Q+ + H +IP T S + + +N C
Sbjct: 360 --------LVDTSSNL-------SKGQQTL---AHFMEQIPPTQISKAANYDVTLNDPGC 401
Query: 419 S--HDQDEKKGKRFLDKER--NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGP 474
++ K +R + E + A W ++ + P C+GH EPC+ V KK GP
Sbjct: 402 VPLANKSSFKERRTISTENTPDPAAKESWAKL--FTRKAPPRCEGHNEPCIVLVTKKAGP 459
Query: 475 TFGRRFFVCARAEGPASNPEAN----CGYFKW 502
GR F++C R GP+ + E C F W
Sbjct: 460 NCGRSFWICPRPLGPSGDKEIGTPWRCPTFIW 491
>gi|325094515|gb|EGC47825.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 636
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 192/515 (37%), Gaps = 108/515 (20%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L G+R+ V GDLNI+ + ID A +F +
Sbjct: 174 FRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGIRKGTLTDSEFVSSPV 233
Query: 88 RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV+ G D+ R HP+R YTCW A NYG RI
Sbjct: 234 RRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARI 292
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC +Q F ++ E L GSD
Sbjct: 293 DYVLC-------DRSMQDW-FSASNIQEG--------------------------LMGSD 318
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 255
H PVY L + + S + L I+ + T + KRE + + SG L
Sbjct: 319 HCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSGRLI 371
Query: 256 AESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVA 314
E +D RS N SG + GV S Q++ + + + +N+
Sbjct: 372 PEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIG---RSNIP 427
Query: 315 SHSTITQGSSNHISPFHVDRAR----------KKAKKSQ--------LGQLSLKSFFHKR 356
S S+ +S P RA+ K+ K+S+ GQ +LK FF +
Sbjct: 428 SPSSTPIATSAE--PNTPKRAQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPK 485
Query: 357 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSS 416
+ + TD S + N + +S + E + K P + C + +G S
Sbjct: 486 T------TSCTTDASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGCQQS 539
Query: 417 VC----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
++D+ R D N + W ++ + P C GH EPC++ V KK
Sbjct: 540 QTAGPPAYDRHNDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKA 594
Query: 473 GPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 503
G GR F++C+R GP + + C F W+
Sbjct: 595 GINRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|149047282|gb|EDL99951.1| rCG36041 [Rattus norvegicus]
Length = 485
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GD+N A ID C+AG F ++ R W
Sbjct: 166 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMD 225
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L +G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 226 GLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
D++ID + + + GSDH PV L
Sbjct: 280 ----------------GNRDLIIDTLQ-----------DAFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGP 474
+ +PLC GH+EPCV R+VKKPGP
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGP 484
>gi|126342732|ref|XP_001367276.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Monodelphis domestica]
Length = 482
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 88/209 (42%), Gaps = 39/209 (18%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L + L F + R E LL G + ++GD+N + +D CD F +N R W
Sbjct: 153 RLTYKLRFYRLLQLRAEALLQAGSHVIILGDVNTSHRPLDHCDPADLECFEENPGRQWLT 212
Query: 93 SMLVES---GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
L + G F D FR HP A+TCW + TGA NYGTR+D+IL
Sbjct: 213 EFLWQPDRDSGLFVDSFRHFHPTTVGAFTCWSTATGARLTNYGTRLDYILG--------- 263
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
+ +L +++ + +EGSDH P+ L I
Sbjct: 264 ------------DRALVLEEFE------------DSFLMPEVEGSDHCPIGATL-RTELI 298
Query: 210 PQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
P P L +RYLP G QQ L L+K
Sbjct: 299 PAPRCPPLCTRYLPEFAGRQQKLSRFLIK 327
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507
PLCKGH EPCV R V+K GP FGR+F+VC+R G SNP A C +F W K+
Sbjct: 426 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHISNPAARCDFFLWVSGKT 478
>gi|29501194|dbj|BAC67539.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 119/523 (22%), Positives = 187/523 (35%), Gaps = 138/523 (26%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 157 RIEFRQSFVEALEARIRNLIAAGKQVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQS 216
Query: 91 --FRSML---------------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L G +D+ R HP RR +TCW + N G+
Sbjct: 217 MPTRRILNQLLFDGSVIGPRDKAREDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGS 276
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 277 RIDYILCS--------DGIKDWFVDSNIQEG--------------------------LMG 302
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCK--- 249
SDH PVY + + +++G ++T L +L + + G+ +
Sbjct: 303 SDHCPVYATMRD-----------------KVVKGGKETSLAEILNPANMFRDGQRIRNWE 345
Query: 250 ------FSGSLPAESNSTGDTEDCSEN------VDRSLNNYCDSGILQG-----VYCSSS 292
S L E + + D N DR N SG G + +
Sbjct: 346 QRDALALSAKLIPEFDRRRNIRDMFTNKAAHASFDR--GNKTGSGARDGEDMTQLGTAMP 403
Query: 293 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVD-RARKKAK-------KSQL 344
+SEG E R+ V+ + H P V A KK+K K
Sbjct: 404 RLQSEGSVGVERERERERERVSQN-------KRHAGPAQVGIPANKKSKGSSDTKTKVAS 456
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ +L+ FF +S + V L+ V S + P +
Sbjct: 457 GQTTLQGFFKPKSTATAGGQGGPLAGPCQVPGRAQTPPLTTRAV------SRQTPTSSQM 510
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 464
+V + ++ GK F E A W ++ L +P C+ H+EPC
Sbjct: 511 VTVKPV-----------EENSSGKVFDPIE----AKESWSKL--LGRRVVPKCE-HEEPC 552
Query: 465 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
++ V KKPG GR F++C R GP+ + E + CG F W+
Sbjct: 553 ISLVTKKPGVNCGRSFYICPRPVGPSGDKERDTEWRCGTFIWS 595
>gi|109499818|ref|XP_223499.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
gi|109500734|ref|XP_001059968.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
Length = 516
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GD+N A ID C+AG F ++ R W
Sbjct: 166 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMD 225
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L +G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 226 GLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
D++ID + + + GSDH PV L
Sbjct: 280 ----------------GNRDLIIDTLQ-----------DAFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
>gi|16904254|gb|AAL30835.1|AF440398_3 DNA lyase-like protein [Zymoseptoria tritici]
Length = 594
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 113/511 (22%), Positives = 177/511 (34%), Gaps = 128/511 (25%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFA 83
+Q F F ++ R L+ QG+R+ +VGDLN+ ID R D
Sbjct: 162 LQDAFRSGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIV 221
Query: 84 KNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
R F +L + G +D R HP RR YT W + A N G
Sbjct: 222 SGPNRRIFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSG 281
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RID +L A + + V + +I L
Sbjct: 282 SRIDFVLVA-------------DVMQSWVKDANI---------------------QEGLL 307
Query: 193 GSDHAPVYMCLGEVP----------EI--PQHSTPSLASRYLPII---RGVQQTLVSVLM 237
GSDH PVY +V EI P STP+ +++ +P R ++ + +
Sbjct: 308 GSDHCPVYADFHDVVADDGGNVALLEIMNPPGSTPAFSAKRMPEFDKRRSIKSMFAAPPV 367
Query: 238 KREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESE 297
K+ + Q + A++N + D S D++ + D
Sbjct: 368 KKITSSQLERTPSGIDAAAQANVP--SADISPPEDKAAASQSDE---------------- 409
Query: 298 GEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KR 356
A + + S P + + GQ SLK FF K
Sbjct: 410 ----------------ARPPSKRKASIPSKEPLPSKKQKDTKVAPSRGQQSLKGFFSSKA 453
Query: 357 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSS 416
S V D + + L++ + + + + P + S + P S S V +
Sbjct: 454 SPVKPDLKSQESSQKLSIASPPAEVAFPPPQSPSTTFPSQEPPSPIASASPTADQ-VATQ 512
Query: 417 VCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF 476
+ S ++ ++ W + + PLC+GH+EPC KK G
Sbjct: 513 IASAERSQR----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQ 554
Query: 477 GRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++CAR GP+ E CG F WA
Sbjct: 555 GRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 585
>gi|149031346|gb|EDL86344.1| rCG38932, isoform CRA_b [Rattus norvegicus]
Length = 346
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVE 97
+ F + R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSN 60
Query: 98 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 61 PGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL----------- 109
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRSLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVLN-VSCVP 146
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
P+L +R+LP G Q ++ L+ E
Sbjct: 147 AKQCPALCTRFLPEFAGTQLKILRFLVPLE 176
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 388
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 203 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 260
Query: 389 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 448
NK+P +DEK+ V W+ +
Sbjct: 261 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 289
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 290 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 343
>gi|358384928|gb|EHK22525.1| DNA lyase, partial [Trichoderma virens Gv29-8]
Length = 630
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 122/536 (22%), Positives = 201/536 (37%), Gaps = 133/536 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF- 91
++EF + F ++ R L+ +G+++ +VGDLN++ +A D + + K + W
Sbjct: 153 RVEFRMEFLQALDARVRNLVAEGKQVVLVGDLNVSRSAADSTNVVENLRKEGLSMEEWMN 212
Query: 92 ---RSML--VESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R + + GG+ +D+ R HP R TCW + N G+
Sbjct: 213 LPSRRLFNHLVYGGTVQGDRDEGREQPVLWDLCREFHPAREGMNTCWDTKRNTRPANNGS 272
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ H L+ ++VT + + L G
Sbjct: 273 RIDYVLCS-------HGLR--DWVT-------------------------EANIQEGLMG 298
Query: 194 SDHAPVYMCLGEV--------PEIPQHSTPSLASR------------YLPIIRGV----- 228
SDH PV+ L +V P + + P + R LP+ +
Sbjct: 299 SDHCPVFATLADVVTTGSEKVPLLNLVNPPGMVDRDGRRLREWHPKDVLPLSAKLIPEFD 358
Query: 229 -QQTLVSVLMKREVAKQGKSCKFSGSLP-AESNSTGDT----EDCSENVDRSLNNYCDSG 282
+Q++ + K+ AK ES GD E N S+ ++
Sbjct: 359 RRQSIRDMFTKKAGAKLSSQSSSLAPSSATESTPEGDDLARLEQPGANTKTSVADHRLG- 417
Query: 283 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKS 342
+ G S+S+Q ++ R A + + S SP AR ++
Sbjct: 418 -MSGASHSASSQ--------SLTGLRPEAPSTKRAAGSIDRSRPPSPKRNKNARS-SRAG 467
Query: 343 QLGQLSLKSFFHKRS-NVSHDDNNSITDTSLNVNNSVT----DTSLSQEEVPESHHHSNK 397
GQ +L+ FF S N +S T TS N N S T+ E P SH
Sbjct: 468 TKGQKTLQGFFQPSSTNRVVGRRDSDTTTSANANASAPFSCKQTTTQPSEPPLSHQAQLA 527
Query: 398 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV------ALLEWRRIQQLME 451
PV + E+ G +++ ++V A W ++ L +
Sbjct: 528 SPVDNLPL------------------ERSGGDWIEGLPDSVVFDPIQAKESWSKL--LGK 567
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
+P C+ H EPC++ K+PG GR F++CAR GP+ E CG F W+
Sbjct: 568 RMLPRCE-HNEPCISLTTKRPGVNCGRSFYICARPLGPSGEKERGSEWRCGTFIWS 622
>gi|302761410|ref|XP_002964127.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
gi|300167856|gb|EFJ34460.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
Length = 388
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 122 SNTGAEQFNYGTRIDHILCAGPCLHQ------KHDLQS-HNFVTCHVNECDILIDYKRWK 174
S +GAE+FNYG+RIDH+ AGPC HD S F C + CDIL+ +KR K
Sbjct: 101 SASGAEEFNYGSRIDHVRIAGPCAGHCQCPDGSHDNSSCDGFAECGTDMCDILLKFKRAK 160
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP-SLASRYLPIIRGVQQTLV 233
P RW GG S +L+GS HAPV + L +P + H+ P L + + + + ++
Sbjct: 161 LDTLP--RWSGGRSLKLDGSVHAPVILQLKHLPSMKLHNWPLDLCLSFAVVSKVLLISIF 218
Query: 234 SVLMKREVAKQGKSCKFSGSLPAESNSTG 262
L +R A + S PA + TG
Sbjct: 219 RKLNERATANTEPDTSRNVSKPAFTQETG 247
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 444 RRIQQLMETS---IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 487
R QQ +E S +PLCKGH EPCV R VKK GP GR F+VC RA+
Sbjct: 325 RSSQQSLEKSAADLPLCKGHSEPCVVRTVKKAGPKLGRGFYVCDRAK 371
>gi|386780804|ref|NP_001248294.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|380790123|gb|AFE66937.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|383413815|gb|AFH30121.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|384943488|gb|AFI35349.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID R + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFR-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|395819091|ref|XP_003782935.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Otolemur
garnettii]
Length = 518
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLAFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLESFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R P+++ A+TCW TGA NYG+RID++
Sbjct: 227 GLLSNLGCQSGSHVGPFIDSYRYFQPKQKGAFTCWSVVTGARHLNYGSRIDYV------- 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L V +L D + GSDH PV L
Sbjct: 280 -----LGDRTLVIDTFQASFLLPD---------------------VMGSDHCPVGAVLNV 313
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
P +P P L +R+LP G Q ++ L+ E
Sbjct: 314 SP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 505
PLC GH+EPCV R VKKPGP GR F++CAR +GP ++ + C +F W S
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRCFYICARPQGPPTDLSSRCNFFLWKGS 517
>gi|326481851|gb|EGE05861.1| DNA lyase [Trichophyton equinum CBS 127.97]
Length = 592
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 124/520 (23%), Positives = 193/520 (37%), Gaps = 144/520 (27%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F L F + + R L+ G+R+ + GDLN AID A K E+
Sbjct: 158 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGAIDSAPALERIRKGTETEEEYLSYP 217
Query: 88 --RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
RI+ R LV GS D+ R HP R YTCW A NYG+
Sbjct: 218 SRRIFNR--LVRPVGSTGDTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGS 275
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ +++S FV ++ E L G
Sbjct: 276 RIDYILCS-------DNIRSW-FVESNIQEG--------------------------LIG 301
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG-------- 245
SDH PVY + + ++P + G ++ ++ + + + G
Sbjct: 302 SDHCPVYASISD--KVP--------------LDGKDVHILDIMNPKGIFEDGVEQPRSNK 345
Query: 246 -KSCKFSGSLPAESNSTGDTEDCSENVDRSLNN-----YCDSGILQGVYCSSSNQESEGE 299
SG L E + + +D N S NN + I G ++E
Sbjct: 346 ITPLALSGKLIPEFDRRRNIKDMFRNHSLSRNNSEVKVSTTTDIQAGSEIPGPTSQTEST 405
Query: 300 FTK-----TIENCRDSANVASHSTITQGS-SNHISPFHVDRARKKAKKSQLGQLSLKSFF 353
K TI N SHS Q S S + P + R +S GQ +L FF
Sbjct: 406 LEKKGAPVTINN----PPKRSHSKGAQASPSKRLKP----KGRPTGTRSN-GQQTLAGFF 456
Query: 354 H-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 412
+R++ + + N+ T +S S +E P + P ++ S ++
Sbjct: 457 KSERTSRAVSEENA------------TASSDSPQETP---AEAKIAPASELSSMAEKIDS 501
Query: 413 VNSSVCSHDQDEKKGKRFLDKERNNVA-----LLEWRRIQQLMETSIPLCKGHKEPCVAR 467
V + V + N+V W ++ + +P C+GH E C++
Sbjct: 502 VPTGVIASPD-------------NSVVPSCSPTESWSKV--FTKKPVPKCEGHHEDCISL 546
Query: 468 VVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KKPG GR F++C R GP+ + E+ C F W+
Sbjct: 547 VTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCPTFIWS 586
>gi|29420517|dbj|BAC66502.1| DNA lyase [Isaria tenuipes]
Length = 611
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/519 (21%), Positives = 188/519 (36%), Gaps = 126/519 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 87
++EF +F ++ R L+ G+ + + GDLNI + +D + K
Sbjct: 157 RIEFRQNFVEALEARIRNLITAGKEVILTGDLNIIRSEMDSSNIAEGLRKEGMTMDEWQS 216
Query: 88 --------RIWFRSMLV------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
++ F ++ G +D+ R HP RR +TCW + N G+
Sbjct: 217 MPTRRILNQLLFDGTVIGPRDKAREDGVLWDICRCFHPTRRGMHTCWDTKRNTRPANLGS 276
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 277 RIDYILCS--------DGIKDWFVDSNIQEG--------------------------LMG 302
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQ-TLVSVLMKREVAKQGKSCK--- 249
SDH PVY + + +++G ++ L V+ + + GK +
Sbjct: 303 SDHCPVYATMRDT-----------------VVKGGKEIALAEVVNPTNMFRDGKRIRNWE 345
Query: 250 ------FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTK 302
S L E + + D N ++ + D G + V + + G+ T
Sbjct: 346 QRDALALSAKLIPEFDRRRNIRDMFTN--KAAHASFDRGNKTRSVARDAEEMKQLGKTTM 403
Query: 303 TIENCRDSANVASHST-----ITQGSSNHISPFHVD-RARKKAK-------KSQLGQLSL 349
S V ++Q H P V A KK+K K GQ +L
Sbjct: 404 PRLQSEGSVGVEREREREREWVSQ-LKRHAGPVQVGIPANKKSKGSSETKTKVAGGQTTL 462
Query: 350 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EVPESHHHSNKIPVTDYSCSVH 408
+ FF +S + D V L+ +VP + P+ + S+
Sbjct: 463 QGFFKPKSTTTAD---------------VQGGPLAGPCQVPGVPGRAQTPPLPASAASLQ 507
Query: 409 ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARV 468
+ +++ GK F E A W ++ L + +P C+ H EPC++ V
Sbjct: 508 TPASWQTGTVKPVEEKSSGKVFDPIE----AKESWSKL--LGKRVVPKCE-HDEPCISLV 560
Query: 469 VKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
KKPG GR F++C R GP+ + E + CG F W+
Sbjct: 561 TKKPGVNCGRSFYICPRPLGPSGDKERDTEWRCGTFIWS 599
>gi|348551967|ref|XP_003461800.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cavia
porcellus]
Length = 514
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 167 RLTFKMRFCRLLQNRAEALLAAGSHVIILGDLNTAHRRIDHCDAINLKYFEEDPARKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G+F D +R P++ A+TCW +GA NYG+R+D++L G
Sbjct: 227 GLLNNIGCQSRSPVGTFIDTYRYFQPQQEGAFTCWSVVSGARHHNYGSRLDYVL--GDRT 284
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ LQS +F+ V GSDH PV L
Sbjct: 285 LVRDTLQS-SFLLPEVM------------------------------GSDHCPVGAVLN- 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+ P G Q +V L+ E
Sbjct: 313 VSSVPAKHPPPLCTRFFPEFAGTQLKIVHFLVPLE 347
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC+GH+EPC+ R VKKPGP GRRF++CAR +GP S+P + C +F+W+
Sbjct: 462 MPLCRGHREPCIMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWS 511
>gi|398388271|ref|XP_003847597.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
gi|339467470|gb|EGP82573.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
Length = 608
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/525 (21%), Positives = 180/525 (34%), Gaps = 142/525 (27%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFA 83
+Q F F ++ R L+ QG+R+ +VGDLN+ ID R D
Sbjct: 162 LQDAFRSGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIV 221
Query: 84 KNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
R F +L + G +D R HP RR YT W + A N G
Sbjct: 222 SGPNRRIFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSG 281
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RID +L A + + V + +I L
Sbjct: 282 SRIDFVLVA-------------DVMQSWVKDANI---------------------QEGLL 307
Query: 193 GSDHAPVY-------------MCLGEVPEIPQ-------------HSTPSLASRYLPII- 225
GSDH PVY + L E+ P STP+ +++ +P
Sbjct: 308 GSDHCPVYADFHDVVDDHGRNVSLLEIMNPPGVFENGQRKVEWTLQSTPAFSAKRMPEFD 367
Query: 226 --RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 283
R ++ + +K+ + Q + SG PA + + + D S + D++ + D
Sbjct: 368 KRRSIKSMFAAPPVKKFASSQLERTP-SGIDPA-AQANAPSADISPHEDKAAASQSDE-- 423
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
A T + S P + +
Sbjct: 424 ------------------------------ARPPTKRKASIPSKDPLPSKKQKDTKAAPS 453
Query: 344 LGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
GQ SLK FF K S V D + + ++ + + +L + P + S + P
Sbjct: 454 KGQKSLKGFFSSKASPVKPDLQSQESSQKTSITSPPAEVALPPPQSPSTTFPSQEPPSPT 513
Query: 403 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 462
S S V + + S ++ ++ W + + PLC+GH+E
Sbjct: 514 ASASPTADQ-VATQIASAERSQR----------------SWGAL--FTKPPAPLCEGHEE 554
Query: 463 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
PC KK G GR F++CAR GP+ E CG F WA
Sbjct: 555 PCKTLQTKKKGSNQGRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 599
>gi|240275156|gb|EER38671.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 636
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/510 (23%), Positives = 186/510 (36%), Gaps = 98/510 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L G+R+ V GDLNI+ + ID A +F +
Sbjct: 174 FRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEFVSSPV 233
Query: 88 RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV+ G D+ R HP+R YTCW A NYG RI
Sbjct: 234 RRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARI 292
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC +Q F ++ E L GSD
Sbjct: 293 DYVLC-------DRSMQDW-FSASNIQEG--------------------------LMGSD 318
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 255
H PVY L + + S + L I+ + T + KRE + + SG L
Sbjct: 319 HCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSGRLI 371
Query: 256 AESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVA 314
E +D RS N SG + GV S Q++ + + + + + +
Sbjct: 372 PEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIGRSNIPSPS 430
Query: 315 SHSTITQGSSNHIS------------PFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSH 361
S T N P + R+ ++ GQ +LK FF ++
Sbjct: 431 STPIATSAEPNTPKRPQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKT---- 486
Query: 362 DDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC--- 418
+ T S + N + +S + E + K P + C + +G S
Sbjct: 487 --TSCTTVASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGCQQSQTAGP 544
Query: 419 -SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 477
++D+D + D N + W ++ + P C GH EPC++ V KK G G
Sbjct: 545 PAYDRDNDNSGKVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKAGINRG 599
Query: 478 RRFFVCARAEGPA----SNPEANCGYFKWA 503
R F++C+R GP + + C F W+
Sbjct: 600 RSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|71004198|ref|XP_756765.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
gi|46095654|gb|EAK80887.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
Length = 663
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 12 VLLQI-MVILFYSMC---TGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLN 67
VLL + + +LF C TG E +LE+ +++ + R L+ +GR++ +VGD+N
Sbjct: 139 VLLDLGLFVLFNVYCPNETGPE-----RLEYKMTYYQCLAERAHRLIQEGRQVMIVGDMN 193
Query: 68 IAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 119
I ID CDA DF ++ R WF+S L G F DV R H +R++ +TC
Sbjct: 194 IIRDPIDHCDAEQSIKEHGWDDFHQHPARSWFQSFLAPHG-KFHDVGRMYHADRKKMFTC 252
Query: 120 WPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 169
W + A NYG R+D+ L L + D+Q+ + + H C I ID
Sbjct: 253 WNTLIDARPANYGVRLDYTLATEGILPWIKGADIQADVYGSDH---CPIYID 301
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 63/167 (37%), Gaps = 23/167 (13%)
Query: 333 DRARKKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSV 378
D + K + SQ GQ L SFF K +VS D TS + N+V
Sbjct: 504 DSIKAKTRASQRGQTKLHSFFAKPKSLAPVATNETSQPIDVSSSDGMVAPKTSTS-GNTV 562
Query: 379 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 438
+TS H N D C ++E +E+ +
Sbjct: 563 DNTSTDPTRDVTKRHGPNVDEAEDAICDLNEFQATTPPTQPLPPNEQSAADRVGTS---- 618
Query: 439 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
L W I M PLC+ H EPC A V KPGP GR+F++C R
Sbjct: 619 --LAWGAIFSPMPA--PLCRNHSEPCRAWTVNKPGPNHGRKFWLCNR 661
>gi|16904257|gb|AAL30837.1|AF440399_1 DNA lyase, partial [Zymoseptoria tritici]
Length = 491
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 115/525 (21%), Positives = 180/525 (34%), Gaps = 142/525 (27%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFA 83
+Q F F ++ R L+ QG+R+ +VGDLN+ ID R D
Sbjct: 45 LQDAFRSGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIV 104
Query: 84 KNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
R F +L + G +D R HP RR YT W + A N G
Sbjct: 105 SGPNRRIFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSG 164
Query: 133 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 192
+RID +L A + + V + +I L
Sbjct: 165 SRIDFVLVA-------------DVMQSWVKDANI---------------------QEGLL 190
Query: 193 GSDHAPVY-------------MCLGEVPEIPQ-------------HSTPSLASRYLPII- 225
GSDH PVY + L E+ P STP+ +++ +P
Sbjct: 191 GSDHCPVYADFHDVVDDHGRNVSLLEIMNPPGVFENGQRKVEWTLQSTPAFSAKRMPEFD 250
Query: 226 --RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 283
R ++ + +K+ + Q + SG PA + + + D S + D++ + D
Sbjct: 251 KRRSIKSMFAAPPVKKFASSQLERTP-SGIDPA-AQANAPSADISPHEDKAAASQSDE-- 306
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
A T + S P + +
Sbjct: 307 ------------------------------ARPPTKRKASIPSKDPLPSKKQKDTKAAPS 336
Query: 344 LGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
GQ SLK FF K S V D + + ++ + + +L + P + S + P
Sbjct: 337 KGQKSLKGFFSSKASPVKPDLQSQESSQKTSITSPPAEVALPPPQSPSTTFPSQEPPSPT 396
Query: 403 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 462
S S V + + S ++ ++ W + + PLC+GH+E
Sbjct: 397 ASASPTADQ-VATQIASAERSQR----------------SWGAL--FTKPPAPLCEGHEE 437
Query: 463 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
PC KK G GR F++CAR GP+ E CG F WA
Sbjct: 438 PCKTLQTKKKGSNQGRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 482
>gi|351705897|gb|EHB08816.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Heterocephalus glaber]
Length = 518
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC+GH+EPCV R VKKPGP GRRF++CAR +GP S+P + C +F+W
Sbjct: 466 MPLCRGHREPCVMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWT 515
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 90/215 (41%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F +SF + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 167 RLTFKMSFYHLLQIRAEALLAAGSHVIILGDLNTAYRRIDHCDAVNLECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ++G G F D +R P++ A+TCW GA NYG R+D+IL
Sbjct: 227 GLLNNLECQAGSHMGPFIDTYRYFQPQQEGAFTCWSVVNGARHLNYGCRLDYIL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ +++D + + + GSDH PV L
Sbjct: 281 ----------------GDRSLVMDTFQ-----------ASFLLPEIMGSDHCPVGAVLN- 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+ P G Q ++ L+ E
Sbjct: 313 VSSVPAKHCPPLCTRFFPEFAGTQLKILRFLVPLE 347
>gi|311276364|ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa]
Length = 515
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 5 KLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVG 64
K+ +DG + VI Y C + +L F + F + R E LL G + ++G
Sbjct: 139 KIRTQDGDEKSLTVINVY--CPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILG 196
Query: 65 DLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VESG---GSFFDVFRSKHPERRE 115
DLN A ID DA F ++ R W +L ++G G F D +R P+++
Sbjct: 197 DLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQAGSHMGPFIDSYRYFQPKQKG 256
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 175
A+TCW + TGA NYG+RID++L + D +FV V
Sbjct: 257 AFTCWSTVTGARHLNYGSRIDYVLGDRALV---MDTFQSSFVLPEVM------------- 300
Query: 176 GNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV 235
GSDH PV L P +P P L +R+LP G Q ++
Sbjct: 301 -----------------GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRF 342
Query: 236 LMKRE 240
L++ E
Sbjct: 343 LVRLE 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 493 PEANCGYFKWA 503
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
>gi|443896515|dbj|GAC73859.1| apurinic/apyrimidinic endonuclease [Pseudozyma antarctica T-34]
Length = 729
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 17 MVILFYSMC---TGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAI 73
+ +LF C TG E +LE+ +++ + R L+ GR + +VGD+NI I
Sbjct: 145 LFVLFNVYCPNETGPE-----RLEYKMTYYQCLAERAHRLIAAGRDVMIVGDMNIIRDPI 199
Query: 74 DRCDA-------GPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 125
D CD G D F ++ R WF S L G F DV R HPERR+ +TCW +
Sbjct: 200 DHCDPEQSMRENGWDHFHQHPARAWFASFLAPQG-KFHDVGRMFHPERRKMFTCWNTLID 258
Query: 126 AEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 169
A NYG R+D+ L + L + D+Q + + H C I ID
Sbjct: 259 ARPANYGVRLDYTLVSEGLLPWIKGADIQPDIYGSDH---CPIYID 301
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 308 RDSANVASHSTITQGSSNH-ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNS 366
RDS+ AS + GS ++ D AR K GQ +L++FF + ++ S S
Sbjct: 475 RDSSAEASPTKRNGGSPKRAVASKGKDGARGKPAAGLKGQTNLQAFFGRPASSSSTAAGS 534
Query: 367 ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 426
+ T+ S + + V S S D C + + + DQ
Sbjct: 535 DSGTTEQAPPSQPSDQV--DSVGASADAS------DAGCDMPDDDAIQEF---QDQASAS 583
Query: 427 GKRFLDKERNNV----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 482
R E++ A L W I PLC+ H E C A V KPGP GR+F++
Sbjct: 584 PPRPAGSEQSATDRIGASLAWGAI--FSPLPPPLCR-HSEACRAWTVNKPGPNHGRKFWL 640
Query: 483 CARAEGPA----------SNPEANCGYFKW 502
C+R GP NPE C +F W
Sbjct: 641 CSRPVGPGYEKTGRAKGDVNPEYRCNFFLW 670
>gi|410211214|gb|JAA02826.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410247596|gb|JAA11765.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410289688|gb|JAA23444.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410336533|gb|JAA37213.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|5410346|gb|AAD43041.1|AF119046_1 APE2 protein [Homo sapiens]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|326471548|gb|EGD95557.1| DNA lyase [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/520 (23%), Positives = 192/520 (36%), Gaps = 144/520 (27%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F L F + + R L+ G+R+ + GDLN AID A K E+
Sbjct: 158 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGAIDSAPALERIRKGTETEEEYLSYP 217
Query: 88 --RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
RI+ R LV GS D+ R HP R YTCW A NYG+
Sbjct: 218 SRRIFNR--LVRPVGSTGDTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGS 275
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ +++S FV ++ E L G
Sbjct: 276 RIDYILCS-------DNIRSW-FVESNIQEG--------------------------LIG 301
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG-------- 245
SDH PVY + + ++P + G ++ ++ + + + G
Sbjct: 302 SDHCPVYASISD--KVP--------------LDGKDVHILDIMNPKGIFEDGVEQPRSNK 345
Query: 246 -KSCKFSGSLPAESNSTGDTEDCSENVDRSLNN-----YCDSGILQGVYCSSSNQESEGE 299
SG L E + + +D N S NN + I G ++E
Sbjct: 346 ITPLALSGKLIPEFDRRRNIKDMFRNHSLSRNNSEVKVSTTTDIQAGSEIPGPTSQTEST 405
Query: 300 FTK-----TIENCRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFF 353
K TI N SHS Q S + P + R +S GQ +L FF
Sbjct: 406 LEKKGAPVTINN----PPKRSHSKGAQAPPSKRLKP----KGRPTGTRSN-GQQTLAGFF 456
Query: 354 H-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 412
+R++ + + N+ T +S S +E P + P ++ S ++
Sbjct: 457 KSERTSRAVSEENA------------TASSDSPQETP---AEAKIAPASELSSMAEKIDS 501
Query: 413 VNSSVCSHDQDEKKGKRFLDKERNNVA-----LLEWRRIQQLMETSIPLCKGHKEPCVAR 467
V + V + N+V W ++ + +P C+GH E C++
Sbjct: 502 VPTGVIASPD-------------NSVVPSCSPTESWSKV--FTKKPVPKCEGHHEDCISL 546
Query: 468 VVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KKPG GR F++C R GP+ + E+ C F W+
Sbjct: 547 VTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCPTFIWS 586
>gi|311347452|gb|ADP90671.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396092|ref|XP_004064289.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Gorilla gorilla gorilla]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|18375507|ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1 [Homo
sapiens]
gi|73921676|sp|Q9UBZ4.1|APEX2_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease XTH2; AltName: Full=APEX nuclease
2; AltName: Full=APEX nuclease-like 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|4996359|dbj|BAA78422.1| APEX nuclease-like 2 protein [Homo sapiens]
gi|5102658|emb|CAB45242.1| AP endonuclease XTH2, putative [Homo sapiens]
gi|10336529|dbj|BAB13764.1| apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gi|12804203|gb|AAH02959.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57864642|gb|AAW56941.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|119613615|gb|EAW93209.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_b
[Homo sapiens]
gi|123993987|gb|ABM84595.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|123997761|gb|ABM86482.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|208965822|dbj|BAG72925.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|311347418|gb|ADP90654.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347420|gb|ADP90655.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347422|gb|ADP90656.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347424|gb|ADP90657.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347426|gb|ADP90658.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347428|gb|ADP90659.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347430|gb|ADP90660.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347432|gb|ADP90661.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347434|gb|ADP90662.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347436|gb|ADP90663.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347438|gb|ADP90664.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347440|gb|ADP90665.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347442|gb|ADP90666.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347444|gb|ADP90667.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347446|gb|ADP90668.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347448|gb|ADP90669.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347450|gb|ADP90670.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347454|gb|ADP90672.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347456|gb|ADP90673.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347458|gb|ADP90674.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347460|gb|ADP90675.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347462|gb|ADP90676.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347464|gb|ADP90677.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347466|gb|ADP90678.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347468|gb|ADP90679.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347470|gb|ADP90680.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347472|gb|ADP90681.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347474|gb|ADP90682.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347476|gb|ADP90683.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347478|gb|ADP90684.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347480|gb|ADP90685.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347482|gb|ADP90686.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347484|gb|ADP90687.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347488|gb|ADP90689.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347490|gb|ADP90690.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347492|gb|ADP90691.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347494|gb|ADP90692.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347496|gb|ADP90693.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|397471227|ref|XP_003807199.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
paniscus]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMHFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355704840|gb|EHH30765.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355757398|gb|EHH60923.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca fascicularis]
Length = 518
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396094|ref|XP_004064290.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Gorilla gorilla gorilla]
Length = 525
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 174 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 233
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 234 SLLSSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 287
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 288 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 319
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 320 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 354
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 474 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 522
>gi|444520956|gb|ELV13065.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Tupaia chinensis]
Length = 517
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 377 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 436
S +S Q+ + HS+ P + L + + + +E K ++ R
Sbjct: 382 SQVGSSRGQKNLTSYFRHSSSCPQVSPDLELPSLPLMGALITPKTSEETVAKVVEEQARV 441
Query: 437 NVALLEWRRIQQLMETSI-------PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
+ A E + I+ L S+ PLC GH+EPCV R VKKPGP GRRF+VCAR +GP
Sbjct: 442 SGAKDE-KEIRTLFWKSVLSGPLPTPLCGGHREPCVMRTVKKPGPNLGRRFYVCARPQGP 500
Query: 490 ASNPEANCGYFKW 502
S+P + C +F W
Sbjct: 501 PSDPLSRCNFFLW 513
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 86/212 (40%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID +A F ++ R W
Sbjct: 167 RLAFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWNAATLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L GSF D +R PE+ A+TCW +GA NYG+RID++L
Sbjct: 227 RLLSNLSCQADSHIGSFVDTYRCFQPEQEGAFTCWSVVSGARHLNYGSRIDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L F + L+ + GSDH PV L
Sbjct: 281 -GDRTLVRDTF------QASFLL--------------------PEVMGSDHCPVGAVL-N 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P PSL +R+LP G Q + L+
Sbjct: 313 VSCVPAKQCPSLCTRFLPEFAGTQLKIFPFLV 344
>gi|403306456|ref|XP_003943750.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID D+ F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 466 VPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|311347486|gb|ADP90688.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARYLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|297710110|ref|XP_002831748.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pongo
abelii]
Length = 518
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 90/215 (41%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F + R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAITGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|322696797|gb|EFY88584.1| DNA lyase [Metarhizium acridum CQMa 102]
Length = 634
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 110/539 (20%), Positives = 192/539 (35%), Gaps = 150/539 (27%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ +G+ + + GDLN+ + +D + + K I W
Sbjct: 165 RVEFRTSFFEALAARIRNLVAEGKEVILAGDLNVIRSEMDSTNVMENLRKENMTIDEWIS 224
Query: 91 ------FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F ++ E +D+ R HP R TCW + N G+
Sbjct: 225 LPTRRIFNQLIFEGSIVGDRDEGRETPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGS 284
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ F + ++ E L G
Sbjct: 285 RIDYILCSNGIKDW--------FTSANIQEG--------------------------LMG 310
Query: 194 SDHAPVYMCLG--------------------------EVPEIPQHSTPSLASRYLPIIRG 227
SDH PV+ + V ++ Q L+++ +P
Sbjct: 311 SDHCPVFATIAGTVASNGRQVSINDVMNPAGMFENGTRVRDLAQKDILPLSAKLIPEF-D 369
Query: 228 VQQTLVSVLMKREVAKQGKSCKF---SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 284
+Q++ + K+ + + ++ S S AE S D S +D +L +
Sbjct: 370 RRQSIRDMFFKKVTSAERRTTPHNSESSSFKAEDTSQASDNDASSQIDNALQTVNTN--- 426
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA----- 339
+ +N+ + +++ + D + P + R++ A
Sbjct: 427 -----TPTNKPAALPYSQPRKRSPDPIDPV--------------PRQLKRSKSAADPIGS 467
Query: 340 -KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKI 398
+K GQ +LK FF S+V L + D PE+ ++ +
Sbjct: 468 KQKISAGQTTLKGFFKPVSSV------------LPSPAVLAD--------PEAQSNATDL 507
Query: 399 PVTDYSCSV---------HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQ 448
P T S S +E S +HD + D+ + + E W ++
Sbjct: 508 PATKTSPSTKGSSENLTSNEFMPPFSEQPAHDSLVDTSPKSPDRVFDPIQAKESWSKL-- 565
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
L + +P C+ H EPC++ V KKPG GR F++C R GP+ E CG F W+
Sbjct: 566 LGKRVVPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKERGSEWRCGTFIWS 623
>gi|296235588|ref|XP_002762961.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Callithrix
jacchus]
Length = 518
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 93/220 (42%), Gaps = 46/220 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID D+ F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 227 GLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG 245
V +P PSL +R+LP G Q ++ L+ KQG
Sbjct: 313 VSSVPAKQCPSLCTRFLPEFAGTQLKILRFLVP---LKQG 349
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
IPLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 466 IPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
Length = 624
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 116/520 (22%), Positives = 194/520 (37%), Gaps = 111/520 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 157 RIEFRQSFVEALDARIRNLITAGKQVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQS 216
Query: 91 ------FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F ++ E +D+ R HP R +TCW + N G+
Sbjct: 217 LPARRIFNQLVFEGTVIGDRDTGREHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGS 276
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D V ++ E L G
Sbjct: 277 RIDYILCS--------DGIKDWIVDSNIQEG--------------------------LMG 302
Query: 194 SDHAPVYMCL-------GEVPEIPQHSTPSLASRYLPIIRGVQQ--------TLVSVLMK 238
SDH PVY + G + + PS +R +Q L+ +
Sbjct: 303 SDHCPVYATMSDKVTKNGTEMTLAEAMNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDR 362
Query: 239 REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEG 298
R ++ + K S +L G + N D + +SG +SS ES
Sbjct: 363 RRNIREMFTSKASQTLLHPEKFGGQSLQI-RNADMAAYTARNSGT-----TASSGAESTN 416
Query: 299 EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA----RKKAKKS-----QLGQLSL 349
F S ++ + +GS P +A K+ K S + GQ +L
Sbjct: 417 CFGAAAPLV--SVGGTNNVNLQRGSQTKRRPDGPAQAAVPTNKRGKNSSDTKTKTGQTTL 474
Query: 350 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH--HHSNKIPVTDYSCSV 407
+ FF ++ V+ +NNS+T + V + +E P ++ + P S S
Sbjct: 475 QGFFKPKT-VASLENNSVTSVAEQVPAGSGRVPVRAQEAPLANGVRRQTRTPSPIMSGS- 532
Query: 408 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 467
SS+ + K ++ + + W ++ L + +P C+ H EPC++
Sbjct: 533 -------SSITTKGLSPAKVFDPIEAKES------WSKL--LGKRVVPKCE-HDEPCISL 576
Query: 468 VVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KKPG GR F++C R GP+ + E + CG F W+
Sbjct: 577 VTKKPGVNCGRSFYICPRPLGPSGDKERDTEWRCGTFIWS 616
>gi|405960123|gb|EKC26070.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Crassostrea gigas]
Length = 527
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 456 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 508
LCKGH+E CV R VKKPGP G++FFVCAR EG ++NPEA C +FKW K K
Sbjct: 475 LCKGHQEACVLRTVKKPGPNKGKQFFVCARGEGHSTNPEARCDFFKWVDYKKK 527
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 104/263 (39%), Gaps = 66/263 (25%)
Query: 5 KLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVG 64
K+ DGV ++ +I Y C ++ +L + L F + + R E LL G + V+G
Sbjct: 126 KIRKHDGVEAELAIINVY--CPRVDPDREDRLLYKLRFFALLQTRAEALLQSGCNVIVLG 183
Query: 65 DLNIAPAAIDRCDAGP-DFAKNEFRIWFRSML-----------VES------------GG 100
D+N+ +IDR + R+W + VE+ GG
Sbjct: 184 DMNVKHKSIDRSEEDEVGTVTTPSRVWVNQFVWDKDQDPSIAAVENKEDFAGTTSSVRGG 243
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 160
F D FR +P++ AYT W + T A + NYG R+D+I +
Sbjct: 244 LFVDSFRYFYPDQTGAYTNWCTLTSARETNYGRRLDYIFT------------NVELAQSD 291
Query: 161 VNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPV---YMCLGEVPEIPQHSTPSL 217
+ +C IL D +EGSDH PV YM I P L
Sbjct: 292 LKDCVILAD---------------------VEGSDHCPVKAEYM----AEFISAEKCPPL 326
Query: 218 ASRYLPIIRGVQQTLVSVLMKRE 240
++++P G Q L S MKRE
Sbjct: 327 CTKHMPEFCGKQIKLSSFFMKRE 349
>gi|358393553|gb|EHK42954.1| DNA lyase [Trichoderma atroviride IMI 206040]
Length = 598
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 109/502 (21%), Positives = 181/502 (36%), Gaps = 106/502 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR 92
+++F + + ++ R L+ +G+++ ++GDLN++ + D + K I W
Sbjct: 162 RVDFRMEYLQALDARVRNLISEGKQVVLMGDLNVSRSESDSTNVAETLRKEGLSIEEWMN 221
Query: 93 -------SMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ L+ G + +D+ R HP R TCW + N G+
Sbjct: 222 VPSRRLFNHLIYGGTVQGDRDEGREQPALWDLCREFHPTREGMNTCWDTKRNTRPANNGS 281
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ N + E DI L G
Sbjct: 282 RIDYVLCS-------------NGLKDWFTEADI---------------------QEGLMG 307
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLA-SRYLPIIRGVQQTLVSVLMKREVAKQGKSC-KFS 251
SDH PVY + +V P LA ++ Q L MK + K +F
Sbjct: 308 SDHCPVYATIADVVTTDTEQVPLLAVMNPTSMVTRDGQRLREWHMKDVLPLSAKLIPEFD 367
Query: 252 GSLPAESNSTGDTEDCSENVDRS-----LNNYCDSGILQGVYCSSSNQESEGEFTKT-IE 305
T + SE +R+ +++ DS L+ + S S + ++
Sbjct: 368 RRQSIRDMFTKSADQASELSNRAEYRLGMSDASDSSKLKPLTESRSEAPPRAKRAAGFVD 427
Query: 306 NCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNN 365
D ++ S + S AR S GQ +L+ FF S+++ + NN
Sbjct: 428 PLSDGGSLKRSKKSNGAMSVNPSLMAEKNARSTTTVSTKGQKTLQGFFKPVSSLAANRNN 487
Query: 366 SITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK 425
D S S ES N P++ L + + Q ++
Sbjct: 488 DGADWSGKSPGS------------ESQAKQNPRPIS--------LQTETNQIFDPVQAKE 527
Query: 426 KGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
+ L RR+ +P C+ H EPC++ V KKPG G F++CAR
Sbjct: 528 SWSKLLG-----------RRV-------LPRCE-HNEPCISLVTKKPGVNCGASFYICAR 568
Query: 486 AEGPASNPEAN----CGYFKWA 503
GP+ E + CG F W+
Sbjct: 569 PLGPSGEKEKDSEWRCGTFIWS 590
>gi|256086538|ref|XP_002579455.1| ap endonuclease [Schistosoma mansoni]
Length = 426
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 105/256 (41%), Gaps = 54/256 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWF 91
+L + F S++ E LL + + + GD NI ID C + D N FR WF
Sbjct: 167 RLNYKHLFQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWF 225
Query: 92 RSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
+L+E F D+FR HP R+ A+TCW S T A Q NYG R+D+I
Sbjct: 226 DQLLIEEQQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYI 285
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
L D++ +T +++ +I + + + + GSDH P
Sbjct: 286 L---------FDMKLVEIITT-ISDNNI-----------------QADLMSHINGSDHCP 318
Query: 199 VYMCLGEVPE---IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 255
+Y L I +S P S Y P + Q L S +M + +K K
Sbjct: 319 IYADLPYFYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA------- 371
Query: 256 AESNSTGDTEDCSENV 271
S++T + C NV
Sbjct: 372 FTSHNTTTSVSCVRNV 387
>gi|345326277|ref|XP_001510545.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ornithorhynchus anatinus]
Length = 671
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 122/323 (37%), Gaps = 55/323 (17%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-AGPD-FAKNEFRIWFRSML 95
F L F + R E +L G + ++GD+N + ID CD + P+ F +N R W L
Sbjct: 301 FKLRFYHLLKLRAEAILRAGSHVIILGDVNTSHRPIDHCDPSDPEHFDENPGRRWLNEFL 360
Query: 96 VESG-----------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
E G G+F D FR HP + A+TCW GA NYGTRID+I
Sbjct: 361 WEPGKAPGKGEVADPPPGGGGGAFVDSFRYFHPTQTNAFTCWSVPQGARHTNYGTRIDYI 420
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
L VT + +L + +EGSDH P
Sbjct: 421 LG------------DRILVTEEFEDSVLLPE---------------------VEGSDHCP 447
Query: 199 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAES 258
V L + P ++YLP G QQ L L++ + ++G S P +
Sbjct: 448 VRAVLKST-LMAAPKCPPFCTKYLPEFAGKQQKLSQFLVR--LDRRGGSRSSPPDSPESA 504
Query: 259 NSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST 318
+ D + R+ G+ + +S + F K +N AN
Sbjct: 505 EAVEDVAPPNRQEKRNSAEKTKVGVKKNRTSASRGGGTLLRFFKPGDNREGKANPPEKMG 564
Query: 319 ITQGSSNHISPFHVDRARKKAKK 341
+ + + V +A ++AK+
Sbjct: 565 PDRAVQDQQAVIGVPQAAEQAKR 587
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 457 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
CK H EPCV R VKK GP GR+F+VCAR G A+NP A C +F W K
Sbjct: 617 CKVHGEPCVMRTVKKAGPNHGRQFYVCARPVGHATNPAARCDFFLWVPKK 666
>gi|322709548|gb|EFZ01124.1| DNA lyase [Metarhizium anisopliae ARSEF 23]
Length = 608
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 110/514 (21%), Positives = 189/514 (36%), Gaps = 104/514 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ +G+ + + GDLN+ + +D + + K I W
Sbjct: 143 RVEFRTSFFEALDVRIRNLVAEGKEVILTGDLNVIRSEVDSTNVMENLRKENMTIGEWIS 202
Query: 91 ------FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F ++ E +D+ R HP R TCW + N G+
Sbjct: 203 LPTRRIFNQLIFEGNIVGDRDEGRQTPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGS 262
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ + + D+ W + L G
Sbjct: 263 RIDYILCS-----------------------NGIRDWFTW-----------ANIQEGLMG 288
Query: 194 SDHAPVYMCL-GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
SDH PV+ + G + S SL P T V L ++++ S
Sbjct: 289 SDHCPVFATIAGTIAR--NGSQVSLNDVMNPAGMFKNGTRVRELAQKDI------LPLSA 340
Query: 253 SLPAESNSTGDTED-------CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 305
L E + D +E N+ S + +S N S T
Sbjct: 341 KLIPEFDRRQSIRDMFSRKVTSAERSTTPHNSGSSSFPAEDASQASDNDASSQAMVNTNT 400
Query: 306 NCRDSANVASHSTITQGSSNHI--SPFHVDRARKKA------KKSQLGQLSLKSFFHKRS 357
+ D HS + S + I +P + R++ A +K GQ +LK FF
Sbjct: 401 SSTDKPAALPHSQPRKRSPDPIDSTPRQLKRSKSGADPIGSRQKISAGQTTLKGFFKPV- 459
Query: 358 NVSHDDNNSITDTSLNVNNSVTDTSL---SQEEVPESHHHSNKIPVTDYSCSVHELHGVN 414
+++ T++ + ++ + + P + S+K+ ++ + E
Sbjct: 460 ------GSALPSTAVLADPEAQSSAAHLPATKTPPSTKRSSDKLTSKEFVPPISEQP--- 510
Query: 415 SSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPG 473
HD + + D+ + + E W ++ L + +P C+ H EPC++ V KKPG
Sbjct: 511 ----VHDSFIRTAPKSPDRVFDPIQAKESWSKL--LGKRVVPRCE-HDEPCISLVTKKPG 563
Query: 474 PTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ E CG F W+
Sbjct: 564 VNRGRSFYICPRPLGPSGEKETGSEWRCGTFIWS 597
>gi|410988667|ref|XP_004000602.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Felis
catus]
Length = 514
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
S+PLC+GH+EPCV R VKKPGP GR F+VCAR +GP ++P + C +F W+
Sbjct: 461 SMPLCRGHREPCVRRTVKKPGPNLGRHFYVCARPQGPPTDPSSRCNFFLWS 511
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 43/213 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F S + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLAFKMRFYSLLKIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSSLGCQTGSHVGPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------DSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
V +P P L +R+LP G Q + L++
Sbjct: 313 VSSVPAKECPPLCTRFLPEFAGTQLKIRRFLVR 345
>gi|426256950|ref|XP_004022099.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Ovis aries]
Length = 514
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------DSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|390600243|gb|EIN09638.1| DNase I-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 567
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 56/223 (25%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRI 89
+L F +++ + R L+ +GR + VVGD+NI +D CD F + R
Sbjct: 152 RLPFKMNYHLMLEERVRELVGEGREVMVVGDMNICATPLDHCDGHLPSNAATFWDHPARA 211
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
WF + L + G DV R PER+ YT W G + NYGTR+D+IL
Sbjct: 212 WFHNWL-DPNGLMIDVLRRFWPERKGMYTVWNQKIGGRETNYGTRVDYILVT-------- 262
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
PG P + + ++GSDH P+++ L ++ +
Sbjct: 263 -------------------------PGLLPWVK-AADIEASVKGSDHCPIWVDLHDI--L 294
Query: 210 PQHS--------------TPSLASRYLPIIRGVQQTLVSVLMK 238
P TP LA++Y P G Q L S K
Sbjct: 295 PGQDIKLRDSLKMNQFRVTPRLAAKYWPEFSGKQTLLSSFFGK 337
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 447 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPE 494
Q +P C H E V KPGP G+ F++C+R GP NPE
Sbjct: 486 QMFAPIPVPRCTVHNELAKEWTVNKPGPNKGKTFYLCSRPVGPGYDKGRGERLREEVNPE 545
Query: 495 ANCGYFKWA 503
C +FKWA
Sbjct: 546 YRCNFFKWA 554
>gi|385145200|emb|CCD57787.1| putative DNA lyase apn2 protein [Neurospora africana]
Length = 627
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 130/555 (23%), Positives = 204/555 (36%), Gaps = 121/555 (21%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 120 FVLIGVYSPATRDE----TRTEFRQAFIDAMDARVRNLVSMGKEVFLCGDLNIIRNEMDT 175
Query: 76 CDAG-PDFAKNEF----------------RIWF------RSMLVESGGS----FFDVFRS 108
AG P+ K E +I F R + GG +D+ R
Sbjct: 176 --AGLPERLKKEAMTLDDFISIPSRRFLNQIVFGGXXXXRVIGEPDGGREKPVLWDLCRE 233
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 168
HP+R YTCW + A N+G+RID++LC+ FV ++ E
Sbjct: 234 LHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDANIQEG---- 281
Query: 169 DYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 228
L GSDH PVY +G+ + S +PI V
Sbjct: 282 ----------------------LLGSDHCPVYATIGD--------SVSKDGVTIPITDIV 311
Query: 229 QQTLVSVLMKREVAKQGKSC---------KFSG---------------SLPAESNSTGDT 264
+ +R+ K C +F G + P + D+
Sbjct: 312 NPEGMFENGQRQREWSQKDCLPTSAKLIAEFDGRQSIKDMFFKKKTPSTTPPSATPAADS 371
Query: 265 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSS 324
+D + S LQG S+S + + T E + Q SS
Sbjct: 372 QDTFYPPNTSSITVNAIAALQGAASSASLPKQLLSQSTTTEPALSQTSPVPKRRAEQPSS 431
Query: 325 NHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNS 377
P A K S+ G Q +L FF ++ V+ D+ + + + + +
Sbjct: 432 YIRPPKKAKAALAKQPSSKNGPGPSQSTLMGFFKPKTPTPTVNPDERLAPVNGNNHSPAT 491
Query: 378 VTDTSLSQEEVPESH----HHSNKIPVTDYSCSVHELHGVNSSVCSHD-QDEKKGKRFLD 432
+ +T+ E P + ++ I D H+ V + +DE KGK D
Sbjct: 492 IAETTSRNEPSPANQPKRPFEADDIEEWDEDAVEHKTSPTTYRVTNTAMEDEGKGKTVFD 551
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
+N + W ++ L + +P C+ H E C + V KKPG GR F++CAR GP+ +
Sbjct: 552 PIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCARPLGPSGD 605
Query: 493 PEAN----CGYFKWA 503
E C F W+
Sbjct: 606 KETGTEFRCKTFIWS 620
>gi|316994995|gb|ADU79051.1| DNA lyase, partial [Zymoseptoria tritici]
Length = 492
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 179/505 (35%), Gaps = 102/505 (20%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFA 83
+Q F F ++ R L+ QG+R+ +VGDLN+ ID R D
Sbjct: 45 LQDAFRSGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIV 104
Query: 84 KNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
R F +L + G +D R HP RR YT W + A N G
Sbjct: 105 SGPNRRIFNQLLTDGEVIGERDEGREAGVLWDTTRGFHPARRGMYTHWDTKKNARPGNSG 164
Query: 133 TRIDHILCAGPCLHQKHD------LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGG 186
+RID +L A D L + + + D++ D+ GG
Sbjct: 165 SRIDFVLVADVMQSWVKDANIQEGLLGSDHCPVYADFHDVVADH--------------GG 210
Query: 187 MSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAK 243
+ LE + V+ E STP+ +++ +P R ++ + +K+ +
Sbjct: 211 NVSLLEIMNPPGVFENGERKVEWTLQSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKTTSS 270
Query: 244 QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKT 303
Q K A++N + D S D++ + D +
Sbjct: 271 QLKRTPSGIDAAAQANVP--SVDISPMEDKAAASLSD---------------------EA 307
Query: 304 IENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHD 362
+ A++ S + KA S+ GQ SLK FF K S V D
Sbjct: 308 RPPTKRKASIPSKDALPNKKQKDT----------KAAPSK-GQKSLKGFFSSKTSPVKPD 356
Query: 363 DNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQ 422
+ + ++ + + + + P + S + P S S V + + S ++
Sbjct: 357 LKSQESSQKSSITSPPAEVAFPPPQSPSTTFPSQEPPSPTASAS-PTADQVATQIASAER 415
Query: 423 DEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 482
++ W + + PLC+GH+EPC KK G GR F++
Sbjct: 416 SQR----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWM 457
Query: 483 CARAEGPASNPEAN----CGYFKWA 503
CAR GP E CG F WA
Sbjct: 458 CARPLGPTGEKEKGTEWRCGTFIWA 482
>gi|431914762|gb|ELK15800.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Pteropus alecto]
Length = 515
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLAFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R P+++ A+TCW TGA NYG+R+D++L
Sbjct: 227 GLLSNLGCQAGSHVGPFIDSYRCFQPKQKGAFTCWSVVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L +R+LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILHFLV 344
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC+GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCRGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
>gi|449302156|gb|EMC98165.1| hypothetical protein BAUCODRAFT_32166 [Baudoinia compniacensis UAMH
10762]
Length = 642
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/522 (23%), Positives = 186/522 (35%), Gaps = 117/522 (22%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
+F F ++ R L G+R+ +VGDLN++ D A D K
Sbjct: 165 DFRYGFICALDCRIRNLSKAGKRVVLVGDLNVSRDERDTASALEDMRKAGITHEEYISTP 224
Query: 88 -RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F +LV+ G +D R+ HP+R YT W A N+G+RI
Sbjct: 225 NRRIFNQLLVDGEVVGERDDGRESGLLWDTCRAFHPQRERMYTHWEQKINARPGNFGSRI 284
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D +L C + ++ N + L GSD
Sbjct: 285 DFVLV---CEEMQTWVKDAN-------------------------------IQEGLVGSD 310
Query: 196 HAPVY-------MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAK--QGK 246
H PVY MC GE ++ P+ R + + V V + + + + +
Sbjct: 311 HCPVYADFHDDVMCAGETVKLADAMNPAGVFSRGFRAREWRLSDVPVFSAKRLPEFERRR 370
Query: 247 SCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY-------CSSSNQESEGE 299
S K S P SL + + QGV+ S +ESE
Sbjct: 371 SIKSMFSTP------------------SLIKQSSTQVAQGVFDAERSFIPSPPQRESEEP 412
Query: 300 FTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL--------GQLSLKS 351
T T+ ++ A+ A + Q SS + K +K+ +L GQ SLK
Sbjct: 413 HT-TVPLSQEIASTAPTAHDNQSSSGVKRKASMATKLKSSKRQKLDGAAPSLKGQQSLKG 471
Query: 352 FFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP--ESHHHSNKIPVTDYSCSVHE 409
FF S + D + T +S + + E P + N Y + H
Sbjct: 472 FFQ--SGRAEVDTTASTQSSTAIEPDAAGVLTTPETSPIKSTDGGINASATPAYDPTTH- 528
Query: 410 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI-----PLCKGHKEPC 464
L ++S++ Q R + L R Q+ T P+C+GH EPC
Sbjct: 529 LPDLDSNLPPSSQSSTT-----SPSRVSAKLAAVERTQRSWSTLFSRPVAPMCEGHDEPC 583
Query: 465 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
+ + KK G GR F++CAR GP+ N E C F W
Sbjct: 584 KSMLTKKKGSNQGRSFWMCARPLGPSGNKEKGTQWRCPTFIW 625
>gi|388855206|emb|CCF51100.1| related to APN2-AP endonuclease, exonuclease III homolog [Ustilago
hordei]
Length = 760
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 26/173 (15%)
Query: 12 VLLQIMVILFYSMC---TGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI 68
VL + +LF C TG E +L++ +++ + R L+ GR++ +VGD+NI
Sbjct: 140 VLDLGLFVLFNVYCPNETGPE-----RLKYKMTYYQCLAERAHRLIQSGRQVMIVGDMNI 194
Query: 69 APAAIDRCDAGPD----------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 118
ID CD P+ F ++ R WF+S L G F DV R HP+RR+ +T
Sbjct: 195 IRDPIDHCD--PEQSMKEHGWEHFHQHPARSWFQSFLAPQG-KFHDVGRMYHPDRRKMFT 251
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILID 169
CW + A NYG R+D+ L L + D+Q+ + + H C + +D
Sbjct: 252 CWNTLIDARPANYGVRLDYTLVTEGLLPWIKGADIQADVYGSDH---CPVYVD 301
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 47/197 (23%)
Query: 333 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 392
+ ++ K+ S GQ SLK FF K ++ S + T T+ + S+ L++ + P S
Sbjct: 512 ETSKGKSAASLKGQTSLKGFFAKPTSSS-----TATPTASSTKTSI---DLAEADEPPSQ 563
Query: 393 HHSNKIPVTDYSCSVHELHG-----------------VNSSVCSHDQDEKKGKRFLDKER 435
S +I + S H+L + S+ S +E KR
Sbjct: 564 PKSIEITIVTDS---HQLEAHPSYSQQGEEEVSNQDLIESATESQAPEESAAKRV----- 615
Query: 436 NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----- 490
A L W I T PLC+ H E C A V KPGP GR+F++C+R GP
Sbjct: 616 --GAFLAWGAI--FSPTPAPLCRNHSEACRAWTVNKPGPNHGRKFWLCSRPVGPGYEKSG 671
Query: 491 -----SNPEANCGYFKW 502
NPE C +F W
Sbjct: 672 RAKGDVNPEYRCNFFLW 688
>gi|385145211|emb|CCD57796.1| putative DNA lyase apn2 protein [Neurospora sublineolata]
Length = 616
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 128/545 (23%), Positives = 195/545 (35%), Gaps = 112/545 (20%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 120 FVLIGVYSPATRDE----TRTEFRQAFIDAMDARVRNLVSMGKEVFLCGDLNIIRNEMDT 175
Query: 76 CDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFFDVFRSKHPE 112
AG P+ K E F + +V G +D+ R HP
Sbjct: 176 --AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPR 233
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R YTCW + A N+G+RID++LC+ FV ++ E
Sbjct: 234 RPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKGW--------FVDANIQEG-------- 277
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 232
L GSDH PVY +G+ T S +PI V
Sbjct: 278 ------------------LLGSDHCPVYATIGD--------TVSKDGTTIPITDIVNPEG 311
Query: 233 VSVLMKREVAKQGKSC-KFSGSLPAE--------------SNSTGDTEDCSENVDRSLNN 277
+ +R+ K C S L E D +D S+ + S
Sbjct: 312 MFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKRKTPAADNQDTSDPPNTSSTT 371
Query: 278 YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARK 337
S LQ S+ + + + T E + Q +S+ V A
Sbjct: 372 AHTSTALQEAASSAPSPKQSLSQSTTTEPALSQTSPGPKRRAEQPASSIRPQKKVKAALS 431
Query: 338 KAKKSQLG----QLSLKSFFHKRSNVSHDDNNSITDTSLNVNN----SVTDTSLSQEEVP 389
K S+ G Q +L FF ++ N + +N NN ++ +T+ E P
Sbjct: 432 KQPSSKTGPGPSQSTLMGFFKPKTPTPTL-NPEERPSPINGNNHSLATIAETATRNEPSP 490
Query: 390 ESHHHSNK-IPVTDYSCSVHELHGVNSSVCSHD------QDEKKGKRFLDKERNNVALLE 442
+ D + +S H +DE KGK D +N +
Sbjct: 491 AKGSQPKRSFEADDIEERDEDAVEPKTSPAKHKATDTAMEDEGKGKTVFDSIQNKES--- 547
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W ++ L + +P C+ H + C + V KKPG GR F++CAR GP+ + E C
Sbjct: 548 WSKL--LGKRVVPKCE-HGDDCQSLVTKKPGINCGRSFYMCARPLGPSGDKETGTEFRCK 604
Query: 499 YFKWA 503
F W+
Sbjct: 605 TFIWS 609
>gi|379047284|gb|AEI30104.2| apurinic/apyrimidinic endonuclease, partial [Camelus dromedarius]
Length = 488
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAANLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G GSF D +R P+++ A+TC + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCQAGSYTGSFIDSYRCFQPKQKGAFTCRSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ + L+ + GSDH PV L
Sbjct: 281 -------GDRTLVIXTFQASFLLP--------------------EVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L +R+LP G Q T++ L+
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLTILRFLV 344
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRF 480
+ +PLC+GH+EPCV R VKKPGP GR F
Sbjct: 460 SPMPLCEGHREPCVMRTVKKPGPNLGRHF 488
>gi|325180868|emb|CCA15278.1| DNA(apurinic or apyrimidinic site) lyase putative [Albugo laibachii
Nc14]
Length = 475
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIW 90
+LE+ ++F + R + L +R+ +VGDLN+A ID C+ +F + R W
Sbjct: 149 RLEYKIAFHELLTRRIQTLRKASKRVVLVGDLNVASKRIDHCEPKASEFGEFEAHPCRKW 208
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
L+ S D++R +P++++A+TCW + T A + NYGTRID+IL Q
Sbjct: 209 LHR-LISSPAPLRDIYRKLYPDKKKAFTCWNTATMARKNNYGTRIDYILVDEKL--QDSV 265
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE----GSDHAPVYMCLGEV 206
L +F + E +W ++ RL+ GSDH PV+ + +
Sbjct: 266 LSCRSFAFKSILE--------KWL-----------TLAIRLDPERLGSDHCPVFAEIDIL 306
Query: 207 PEIPQHSTPSLASRY 221
+ TP+LAS++
Sbjct: 307 FQTACTLTPALASKH 321
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 421 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 480
D+DE KR D+ +W+++ + P+C + +P VAR V K GRRF
Sbjct: 395 DRDEIPKKRKQDQ-------TDWKKVLTGQISPTPMCYCN-QPSVARAVVKKNENCGRRF 446
Query: 481 FVCARAEGPASNPEANCGYFKWAFSKSK 508
+VC + G A +P A C YF+WA S K
Sbjct: 447 YVCTKPAGEAGDPNARCNYFQWANSSRK 474
>gi|194228591|ref|XP_001494126.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Equus
caballus]
Length = 512
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F + R W
Sbjct: 166 RLAFKMRFYRLLQTRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW +GA NYG R+D++L
Sbjct: 226 SLLSNPGCQAESHVGPFIDSYRCFQPKQEGAFTCWSVVSGARPLNYGCRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L++ E
Sbjct: 312 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 346
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 458 SPMPLCGGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPASRCNFFLWS 509
>gi|47206818|emb|CAF91198.1| unnamed protein product [Tetraodon nigroviridis]
Length = 506
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 63/142 (44%), Gaps = 34/142 (23%)
Query: 99 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 158
GG F D FR HP R A+TCW + TGA Q NYGTRID+I H L S FV
Sbjct: 185 GGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYGTRIDYIFA-------DHRLASEQFVA 237
Query: 159 CHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 218
DI+ + +EGSDH PV+ L +P P L
Sbjct: 238 A-----DIMPE---------------------VEGSDHCPVWGQLS-CSLVPSTKPPPLC 270
Query: 219 SRYLPIIRGVQQTLVSVLMKRE 240
+RYLP G QQ L +K E
Sbjct: 271 TRYLPEFAGKQQKLSHFFVKAE 292
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 37/48 (77%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
P CK HKEPCV R VKK GP GR+FFVCAR +G ASNP+A C +F+W
Sbjct: 458 PSCKVHKEPCVLRTVKKDGPNMGRQFFVCARPQGHASNPDARCNFFEW 505
>gi|336463554|gb|EGO51794.1| hypothetical protein NEUTE1DRAFT_149501 [Neurospora tetrasperma
FGSC 2508]
Length = 654
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 128/554 (23%), Positives = 200/554 (36%), Gaps = 121/554 (21%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E ++EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 149 FVLIGVYSPATRDE----TRIEFRQAFIDAMDARVRNLVSMGKEVFLCGDLNIIRNEMDT 204
Query: 76 CDAGPDFAKNEFRI---------WFRSMLVESG------------GSFFDVFRSKHPERR 114
K + F + +V G +D+ R HP+R
Sbjct: 205 AGLPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPKRP 264
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
YTCW + A N+G+RID++L C D FV ++ E
Sbjct: 265 GMYTCWETRKNARPGNFGSRIDYVL----CSSGIKDW----FVDANIQEG---------- 306
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 234
L GSDH PVY + + + S +PI + +
Sbjct: 307 ----------------LLGSDHCPVYATISD--------SVSRDGVIIPITDIMNPEGMF 342
Query: 235 VLMKREVAKQGKSC-KFSGSLPAESNSTGDTED------CSENVDRSLNNYCDSG-ILQG 286
+R+ K C S L E + +D N +S DS I
Sbjct: 343 KNGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSNTPKSATPAADSQEIPDS 402
Query: 287 VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK------ 340
SS + +T S S T+ + + SP RA + A
Sbjct: 403 PNTSSITVNATTVLQETASFASSPKQWLSQSAATEPALSQTSPVPKRRAEQPAPYIRPPK 462
Query: 341 ----------KSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDTSL 383
S+ G Q +L FF ++ V+ D+ + + + + + +T+L
Sbjct: 463 KAKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPINGNNHSPATTAETAL 522
Query: 384 SQEEV------PESHHHSNKIPVTDYSCSVHEL----HGVNSSVCSHDQDEKKGKRFLDK 433
E P+ + D H+ +G NS+V +DE KGK D
Sbjct: 523 RNEPFTAKGSQPKQSFEVDNFEERDEHAVEHKTNPTPYGENSTVM---EDEGKGKTIFDP 579
Query: 434 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 493
+N + W ++ L + +P C+ H E C + V KKPG GR F++CAR GP+ N
Sbjct: 580 IQNRES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCARPLGPSGNK 633
Query: 494 EAN----CGYFKWA 503
E C F W+
Sbjct: 634 ETGTEFRCKTFIWS 647
>gi|336264660|ref|XP_003347106.1| hypothetical protein SMAC_05405 [Sordaria macrospora k-hell]
gi|380093801|emb|CCC08765.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 641
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 125/561 (22%), Positives = 207/561 (36%), Gaps = 138/561 (24%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 137 FVLIGVYSPATRDE----TRTEFRQAFIDAMDARVRNLIAMGKEVFLCGDLNIIRNEMDT 192
Query: 76 CDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFFDVFRSKHPE 112
AG P+ K E F + +V G +D+ R HP
Sbjct: 193 --AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPR 250
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R YTCW + A NYG+RID++LC+ FV ++ E
Sbjct: 251 RPGMYTCWETRKNARPGNYGSRIDYVLCSSGI--------KDWFVDANIQEG-------- 294
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE--------VP----------------- 207
L GSDH PVY + + +P
Sbjct: 295 ------------------LLGSDHCPVYATISDTVTRDGITIPITDLMNPEGMFKDGQRQ 336
Query: 208 -EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 266
E Q ++++ +P +Q++ + K+ K + P + + D +D
Sbjct: 337 REWSQKDCLPISAKLIPEF-DRRQSIKDMFFKK---------KTPSTTPKSATAAADGQD 386
Query: 267 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 326
+ + S + LQ S+ + ++ + T E ++ S I + +
Sbjct: 387 TIDPTNTSSTTANATNALQEAASSAPSLKTSLSQSTTTEPA-----LSRTSPIPKRRAEQ 441
Query: 327 ISPFHVDRARKKAKKSQLGQLSLKS-----------FFHKR---SNVSHDDNNSITDTSL 372
+P R KKAK + Q S KS FF + +V ++ + D +
Sbjct: 442 PAP--AARPSKKAKATLSKQPSSKSVPGPSQSTLMGFFKPKIPTPSVKAEERPATADVNN 499
Query: 373 NVNNSVTDTSLSQEEVPE------SHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 426
++ DT+ PE S ++ I D + + DE+
Sbjct: 500 YSPETIADTTTGDRLFPEKAGQPSSSFQTDDIEDWDEDAVASKTSPTTHKTTTAAMDEE- 558
Query: 427 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 486
GK F D +N + W ++ L + +P C+ H + C++ V KKPG GR F++CAR
Sbjct: 559 GKVF-DPIQNKES---WSKL--LGKRVVPKCE-HGDDCMSLVTKKPGINCGRSFYMCARP 611
Query: 487 EGPASNPEAN----CGYFKWA 503
GP+ + E C F W+
Sbjct: 612 LGPSGDKETGTEFRCKMFIWS 632
>gi|414144888|ref|NP_001258677.1| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2 [Homo
sapiens]
gi|119613616|gb|EAW93210.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_c
[Homo sapiens]
gi|221045760|dbj|BAH14557.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 97
+ F + R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 98 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-SVSSVP 146
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
P L +R+LP G Q ++ L+ E
Sbjct: 147 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|426396096|ref|XP_004064291.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 3
[Gorilla gorilla gorilla]
Length = 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 97
+ F + R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSS 60
Query: 98 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-SVSSVP 146
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
P L +R+LP G Q ++ L+ E
Sbjct: 147 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|194376980|dbj|BAG63051.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 97
+ F + R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRTEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 98 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-SVSSVP 146
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
P L +R+LP G Q ++ L+ E
Sbjct: 147 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|350645665|emb|CCD59640.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 518
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 106/256 (41%), Gaps = 54/256 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWF 91
+L + F S++ E LL + + + GD NI ID C + D N FR WF
Sbjct: 167 RLNYKHLFQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWF 225
Query: 92 RSMLV-----------ESGG--SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
+L+ S G F D+FR HP R+ A+TCW S T A Q NYG R+D+I
Sbjct: 226 DQLLIGEQQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYI 285
Query: 139 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
L D++ +T +++ +I D + + + GSDH P
Sbjct: 286 L---------FDMKLVEIITT-ISDNNIQAD-----------------LMSHINGSDHCP 318
Query: 199 VYMCLGEVPE---IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 255
+Y L I +S P S Y P + Q L S +M + +K K
Sbjct: 319 IYADLPYFYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA------- 371
Query: 256 AESNSTGDTEDCSENV 271
S++T + C NV
Sbjct: 372 FTSHNTTTSVSCVRNV 387
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 343 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 402
Q Q+ L+SF +S+ + +T + +N+ T S V H +
Sbjct: 349 QKKQMDLESFVMSKSH------SKVTKQAFTSHNTTTSVSC----VRNVHSKEKRPAFRQ 398
Query: 403 YSCSVHELHGVNSSVCSHDQD-------EKKGKRFLDKERNNVALLEWRRIQQLMETSIP 455
+ E + +S C +DQ E ++ D + + WR + + P
Sbjct: 399 TKITFREYIPIETSTCIYDQSSSIENTTETLQRKIYDPSKTAQSTEAWRSLFSGPKKP-P 457
Query: 456 LCKGHKEPCVARVVKK----PGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+C GHKEPCV R VKK G GRRF+VCAR +G + N A C F W
Sbjct: 458 VCLGHKEPCVMRTVKKLKTTKGSRLGRRFWVCARPQGASDNQAARCSTFFW 508
>gi|301792507|ref|XP_002931219.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ailuropoda melanoleuca]
gi|281349729|gb|EFB25313.1| hypothetical protein PANDA_022064 [Ailuropoda melanoleuca]
Length = 516
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 43/213 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLSFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + S+R M GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ------DSFRLPEVM-----GSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK 238
V +P P L +R+LP G Q ++ L++
Sbjct: 313 VSSMPAKQCPPLCTRFLPEFAGTQLKILRFLVR 345
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 513
>gi|332860859|ref|XP_003317535.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
troglodytes]
Length = 466
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 415 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 463
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 43/190 (22%)
Query: 60 IFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-------GSFFDVFRSKH 110
+ ++GDLN A ID DA F ++ R W S+L G G F D +R
Sbjct: 140 VIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQ 199
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
P++ A+TCW + TGA NYG+R+D++L + ++ID
Sbjct: 200 PKQEGAFTCWSAVTGARHLNYGSRLDYVL----------------------GDRTLVIDT 237
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQ 230
+ + + GSDH PV L V +P P L +R+LP G Q
Sbjct: 238 FQ-----------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCTRFLPEFAGTQL 285
Query: 231 TLVSVLMKRE 240
++ L+ E
Sbjct: 286 KILRFLVPLE 295
>gi|441675724|ref|XP_003276345.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nomascus
leucogenys]
Length = 479
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 428 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 476
>gi|348683853|gb|EGZ23668.1| hypothetical protein PHYSODRAFT_481346 [Phytophthora sojae]
Length = 476
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 19 ILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 78
+L + C L R LE+ L F + + R L +R+ VVGD+NIA ID CD
Sbjct: 136 VLLNTYCPALASADR--LEYKLQFHALLEDRVRALRRANKRVVVVGDINIAHREIDHCDP 193
Query: 79 ------GPDFAKNEFRIWFRSML-------------VESGGSF--FDVFRSKHPERREAY 117
G FA + R W + +SG F D FR +P + +A+
Sbjct: 194 DTHRADGSSFADHPCRRWMDGFVGKPEEQDCNFYSEPKSGYEFKMVDAFRHFYPTQTKAF 253
Query: 118 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 177
TCW + TGA Q NYGTRID+IL P LQS V C I D
Sbjct: 254 TCWNTQTGARQTNYGTRIDYIL-VDPAF-----LQS-------VTACSIEAD-------- 292
Query: 178 APSYRWKGGMSTRLEGSDHAPVYM-CLGEV---PEIPQHSTPSLASRYLPIIRGVQQTLV 233
RL GSDH PV + C E+ I + T +L+++ G QQ++
Sbjct: 293 ------------RL-GSDHCPVVISCTVELETDSSINRGITAALSAKNFVEFSGTQQSIK 339
Query: 234 S 234
S
Sbjct: 340 S 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 441 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 500
LEW+++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 404 LEWQQVLSGRPPPTPLCYC-GQPTVLRSVVKANENWGRKFYVCTKPAGERGNPDARCEFF 462
Query: 501 KWAFSKSKQK 510
KWA +K +K
Sbjct: 463 KWADNKGPKK 472
>gi|225685280|gb|EEH23564.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb03]
Length = 510
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 123/521 (23%), Positives = 186/521 (35%), Gaps = 130/521 (24%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F +F +++ R L+ G+R+ + GDLNI+ + ID A +F
Sbjct: 58 FRKAFVNAVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPV 117
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ SGG D+ R HP+RR YTCW A NYG+R
Sbjct: 118 RRIFNQLV--SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSR 175
Query: 135 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGS 194
I ++V C + I+ D+ + L GS
Sbjct: 176 I-------------------DYVLCSL----IMRDW-----------FCASNIQEGLMGS 201
Query: 195 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 254
DH PVY + + + S + L I+ V+ KRE + SG L
Sbjct: 202 DHCPVYADIKD-----KVSLDDMEVHILDILN-PDGMFVNGERKREYSS-ANVLPLSGRL 254
Query: 255 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEF-TKTIENCR----- 308
E C R + ++ SS S+G+ + + N R
Sbjct: 255 IPEF--------CQRRSIRDM-----------LFRQSSKGASQGDVNSAGVTNPRVPQKD 295
Query: 309 ----DSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ---------LGQLSLKSFFHK 355
+ + AS ST T + K+ K+SQ GQ SLK FF
Sbjct: 296 TLGTNISGPASPSTSTTPKRSQQGDDGTTSRSKRLKRSQSSAIATARTKGQKSLKGFFGL 355
Query: 356 RSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV-TDYSCSVHELHGVN 414
+ + S D+ + S V++ V V + K P+ YSC + G
Sbjct: 356 KGSGSTADDQT---NSPKVSDPVA--------VGNEQQEAAKSPLDITYSCPPGDGCGPE 404
Query: 415 SSVCSHDQDEKKGKRFLDKERNNVALL--------EWRRIQQLMETSIPLCKGHKEPCVA 466
Q E + N+ ++ W RI + P C GH EPC++
Sbjct: 405 DDETQGQQQEAAEPLANGGDSNDDCIVHDPIANKESWSRI--FTKKPAPRCSGHHEPCIS 462
Query: 467 RVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 503
V KK G GR F++CAR GP+ + + C F W+
Sbjct: 463 LVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 503
>gi|320163021|gb|EFW39920.1| apurinic/apyrimidinic endonuclease 2 [Capsaspora owczarzaki ATCC
30864]
Length = 734
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 85/226 (37%), Gaps = 47/226 (20%)
Query: 19 ILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD- 77
+LF C + ++ F F + R L GR + V GD N+ ID CD
Sbjct: 329 VLFNLYCPRADSAEGERMTFKQEFYRVLQLRVNALRTAGRCVIVAGDFNLTHRRIDHCDP 388
Query: 78 -------AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN 130
DF + R W S L E D FR HP YTCW +T A + N
Sbjct: 389 ENYTTDDGSVDFEAHPSRRWMESFLAEG---RVDCFRHFHPLLSSRYTCWRVDTRARETN 445
Query: 131 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTR 190
YGTRID+I+ + + ++ C L TR
Sbjct: 446 YGTRIDYIV-------------TDQALLPDISGCYHL---------------------TR 471
Query: 191 LEGSDHAPVYMCLGEVPE--IPQHSTPSLASRYLPIIRGVQQTLVS 234
GSDH PV + IPQ + P L +RYLP + G L S
Sbjct: 472 FPGSDHCPVVITAAPTLRLTIPQRNPPKLCARYLPGMGGKTVQLTS 517
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 455 PLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
P C GH EPCV R VK GR+F+VC R +G +NPEA+C +FKW
Sbjct: 685 PRCTGHGEPCVERTVKNGSAQNIGRKFYVCGRPKGHTNNPEASCNFFKW 733
>gi|119613614|gb|EAW93208.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_a
[Homo sapiens]
Length = 294
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 243 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 34/141 (24%)
Query: 100 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 159
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 17 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL-------------------- 56
Query: 160 HVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 219
+ ++ID + + + GSDH PV L V +P P L +
Sbjct: 57 --GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCT 102
Query: 220 RYLPIIRGVQQTLVSVLMKRE 240
R+LP G Q ++ L+ E
Sbjct: 103 RFLPEFAGTQLKILRFLVPLE 123
>gi|62751813|ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
gi|73921675|sp|Q5E9N9.1|APEX2_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|59858127|gb|AAX08898.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 514
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------SSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|296470685|tpg|DAA12800.1| TPA: DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
Length = 514
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------SSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|440907085|gb|ELR57275.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos grunniens mutus]
Length = 514
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------SSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|426256952|ref|XP_004022100.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Ovis aries]
Length = 343
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 289 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 340
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 43/207 (20%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML-- 95
+ F + R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSN 60
Query: 96 --VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 61 LGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL----------- 109
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ-----------DSFLLPEVMGSDHCPVGAVL-SVSSVP 146
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLM 237
P L + +LP G Q ++ L+
Sbjct: 147 AKQCPPLCTCFLPEFAGTQLKILRFLV 173
>gi|61554419|gb|AAX46554.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 407
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------SSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 114/509 (22%), Positives = 188/509 (36%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R YTCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMYTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V ++E P +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQVP----ARERTPLQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|359324281|ref|XP_003640323.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Canis
lupus familiaris]
Length = 517
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 169 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMD 228
Query: 93 SMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 229 GLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL------ 282
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 283 ----------------GDRTLVIDTFQ-----------DSFLLPEVMGSDHCPVGAVL-S 314
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L +R+LP G Q ++ L+
Sbjct: 315 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 346
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 465 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 514
>gi|344297470|ref|XP_003420421.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Loxodonta
africana]
Length = 516
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 364 NNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD 423
N + S S +S Q+ + S+ P + L GV + + +Q+
Sbjct: 369 QNKASVRSTRPRPSQAGSSRGQKNLMSYFQPSSSHPQASPDLELPSLMGVPVTPVTPEQE 428
Query: 424 ------EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFG 477
E + K K V L W+ + + +PLC GH EPCV R VKKPGP G
Sbjct: 429 AAAKMVEVQAKASETKYEKEVRTLCWKSVLA-GPSPMPLCWGHGEPCVIRTVKKPGPNLG 487
Query: 478 RRFFVCARAEGPASNPEANCGYFKW 502
R F++CAR GP ++P A C +F W
Sbjct: 488 RCFYICARPRGPPTDPSARCNFFLW 512
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLAFKMHFYRLLQIRAEALLEAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R P++ A+TCW +GA NYG+R+D++L
Sbjct: 227 GLLSVLGCQAGAHIGPFIDSYRCFQPKKEGAFTCWSVVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRALVIDTFQ-----------DSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q + L++ E
Sbjct: 313 VSSVPTKQCPPLCTRFLPEFAGTQLKIRHFLIRLE 347
>gi|255089412|ref|XP_002506628.1| predicted protein [Micromonas sp. RCC299]
gi|226521900|gb|ACO67886.1| predicted protein [Micromonas sp. RCC299]
Length = 583
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 48/180 (26%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF-------AKNEFRIW 90
F L F ++ R+ LL GRR+ + GD N++ ID A + +N+ R W
Sbjct: 219 FKLDFLVAVEIRYRALLDAGRRVVLCGDWNVSYGVIDSAVAIEERLMDEALCERNQSRQW 278
Query: 91 FRSMLVESGGS-------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
R + G+ DVFR +P R AYTCW + GA+ NYG+RID+ LC
Sbjct: 279 LRRQVSGGEGAKGAERDPLVDVFRRDYPAARGAYTCWNVSAGAQLTNYGSRIDYFLC--- 335
Query: 144 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
V C G++ + EGSDHAPV++ +
Sbjct: 336 ----------DEVTAASVARC---------------------GIAPKHEGSDHAPVFIIV 364
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
+ W+ IQ+ M + P C+GH PC R VK+ G GR FF C + +G + A+CG+
Sbjct: 518 VAAWKAIQKRM--APPKCRGHGLPCKVRTVKE-GANKGRGFFCCPKPKGMKGDKNADCGF 574
Query: 500 FKW 502
F+W
Sbjct: 575 FQW 577
>gi|355668896|gb|AER94341.1| APEX nuclease 2 [Mustela putorius furo]
Length = 259
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 208 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 257
>gi|295663072|ref|XP_002792089.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279264|gb|EEH34830.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
Length = 570
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 119/527 (22%), Positives = 186/527 (35%), Gaps = 136/527 (25%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F +F +++ R L+ G+R+ + GDLNI+ + ID A +F
Sbjct: 112 FRKAFVNAVDARVRNLVDMGKRVILTGDLNISGSEIDSARALEEIRKSTTTNSEFVSAPV 171
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ SGG D+ R HP+RR YTCW A NYG+R
Sbjct: 172 RRIFNQLV--SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSR 229
Query: 135 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGS 194
I ++V C + I+ D+ + L GS
Sbjct: 230 I-------------------DYVLCSL----IMRDW-----------FCASNIQEGLMGS 255
Query: 195 DHAPVYMCLGEVPEIP-----------------------QHSTPS---LASRYLPIIRGV 228
DH PVY + + + ++ST L+ R +P
Sbjct: 256 DHCPVYADIKDKVSLDNMEVHILDILNPEGMFVNGERKREYSTADVLPLSGRLIPEF--C 313
Query: 229 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 288
Q+ + ++ R+ +K G+ + NS G T D N + G
Sbjct: 314 QRRSIKDMLFRQSSK--------GASQGDVNSAGVTNPPVPQKDTLGTN------ISGPA 359
Query: 289 CSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLS 348
S++ G T D + + + S+ I+ AR K GQ S
Sbjct: 360 SPSTSTTPWGPSTPKRSQQGDDGTTSRSKRLKRSQSSAIA-----TARTK------GQKS 408
Query: 349 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH 408
LK FF + + S D+ + + V+D + E E+ I YSC
Sbjct: 409 LKGFFGLKGSGSTADDQTNSP-------KVSDPAAVGNEQQEAAKSPLDI---TYSCPPG 458
Query: 409 ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE--------WRRIQQLMETSIPLCKGH 460
+ G Q E + N+ ++ W RI + P C GH
Sbjct: 459 DGCGPEDDGTQGQQQETAEPLANGGDSNDDCIVHDPIANKELWSRI--FTKKPAPRCSGH 516
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 503
EPC++ V KK G GR F++CAR GP+ + + C F W+
Sbjct: 517 HEPCISLVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 563
>gi|401883940|gb|EJT48120.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 2479]
gi|406696085|gb|EKC99381.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 8904]
Length = 635
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRS 93
+ L+F + + R E L+ GR + + GD+N+ ID + G + + R+ F S
Sbjct: 183 YKLNFLTVLRARVEALMAAGREVILAGDMNVIRQPIDFGEGTIVPGTHYLDHPDRLLFES 242
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH---QKHD 150
G DV R P+R YTCW + A NYG+RID+ILC P L + D
Sbjct: 243 W-CHPKGPLIDVVRESFPDREGMYTCWNTKIDARPANYGSRIDYILCT-PGLRKWIKGGD 300
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 210
+QS F + H C + ID N + R K ++ AP + +VP
Sbjct: 301 IQSKVFGSDH---CPVYIDLHDEIEENGRTIRLKDVLNPANRPQSTAPKFPS--DVPRT- 354
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSV 235
P A+++ G Q+TL S+
Sbjct: 355 APEPPRFATKFFDEFSGKQRTLKSL 379
>gi|339236551|ref|XP_003379830.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
gi|316977461|gb|EFV60557.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
Length = 462
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE 97
F L+F + + E LL G + ++GD+N+ ID CD +F +E RIW L +
Sbjct: 152 FRLAFLKLLQHCTECLLNSGNYVLILGDMNLCHKRIDHCDPDQEFDTDEARIWLCEFLYD 211
Query: 98 S----GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+ G D++R +P + +TCW S A N+GTRID+IL
Sbjct: 212 TDKNADGKMVDLYRIHYPNKGRMFTCWNSQKRARILNFGTRIDYIL 257
>gi|388579621|gb|EIM19943.1| DNase I-like protein [Wallemia sebi CBS 633.66]
Length = 510
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEF--- 87
+++F SF ++ R L GR+I ++GD+NIA AID CD D K EF
Sbjct: 164 RVKFKKSFHELLFERIRILKEGGRQIILLGDINIAHRAIDHCDGLELTRTDIGKMEFETK 223
Query: 88 --RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
R W ++ + D+ R HP R +TCW A NYGTRID++L
Sbjct: 224 YTRQWMDKLVSDDNSPLVDIMRLFHPTREGMFTCWNQLINARPSNYGTRIDYVL 277
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN------------CGYFK 501
+P CK H E C V KPGP G++F++C+R GP + + C +F
Sbjct: 431 VPKCKVHNEDCREYTVNKPGPNKGKKFWLCSRNVGPGYDAGGSKRNRADVDSRYRCNFFV 490
Query: 502 WA 503
W+
Sbjct: 491 WS 492
>gi|62085788|gb|AAX63285.1| DNA lyase [Beauveria bassiana]
gi|62085830|gb|AAX63306.1| DNA lyase [Beauveria bassiana]
gi|62085840|gb|AAX63311.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/509 (22%), Positives = 188/509 (36%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V ++E P +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQVP----ARERTPLQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|213405473|ref|XP_002173508.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
gi|212001555|gb|EEB07215.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
Length = 554
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/486 (22%), Positives = 174/486 (35%), Gaps = 120/486 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAGPDFAKNEF------ 87
+L+F F +++ R L + +R + ++GD+NI +D D D K +F
Sbjct: 160 RLKFRRLFYNALRDRIIRLTQEAKRNVILLGDINILRDELDTAD-NKDIQKEQFDESIRE 218
Query: 88 -RIWFRSML-VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
R W R ML G D R +HP RR +TCW + N+GTR
Sbjct: 219 SREWVRGMLQPHPEGLLIDTTRHRHPVRRGMFTCWNTRLNTRPTNFGTR----------- 267
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
IDY P P + + + GSDH PV++ E
Sbjct: 268 ----------------------IDYICISPALLP-WMQDANIMPEIMGSDHCPVFLDFKE 304
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 265
+ G TL L E + P S G+
Sbjct: 305 T------------------VDGC--TLYDRLSHSE------------TFPLLSVLRGERY 332
Query: 266 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 325
S+N+ S++N ++ KT DS + + + + +
Sbjct: 333 RRSKNIHDMFKR-----------VSTNNSATKKSSPKT----EDSPSESEQHESNKRTRS 377
Query: 326 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 385
+P ++ KK+K L + LK+ + D N++ TS T Q
Sbjct: 378 SDTPQTTEKVTKKSKNQTLLSMFLKTPKEASARKDSSDKNALLRTSSEHTQEEVSTENFQ 437
Query: 386 EEVPESHHHSNKIPVTDYSCSVH-ELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 444
+E S + + +S S + E V S S + D N +L +R
Sbjct: 438 DE-----EESYAVSQSTFSSSTYTENEQVKCSTLSSNVD-------------NESLRLFR 479
Query: 445 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR-----AEGPASNPEAN--- 496
+ + +PLC GH EPC VKKPG +GR+F+ C+R E ++ E N
Sbjct: 480 KA--FSKPRVPLCTGHMEPCKKLDVKKPGVNYGRKFWCCSRPVGEVVENSSATNEKNPYQ 537
Query: 497 CGYFKW 502
C +F W
Sbjct: 538 CRFFLW 543
>gi|432091224|gb|ELK24429.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 607
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---SGGS----FFD 104
L G + ++GDLN A ID DA F ++ R W +L + GGS F D
Sbjct: 278 LPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKLDCQGGSQVGAFID 337
Query: 105 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 164
+R HP++ A+TCW + TGA + NYG+RID++ L VT +
Sbjct: 338 AYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------LGDRTLVTDTFQDS 385
Query: 165 DILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 224
+L + + GSDH PV L V +P P L +R+LP
Sbjct: 386 FLLPE---------------------VMGSDHCPVGAVL-NVSSVPAKQCPPLCTRFLPE 423
Query: 225 IRGVQQTLVSVLM 237
G Q ++ L+
Sbjct: 424 FSGTQLKILHFLV 436
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+PLC GH EPCV R VKK GP G F+VC+R GP+++P + C +F W+
Sbjct: 555 MPLCGGHGEPCVMRTVKKAGPNQGHHFYVCSRPRGPSTDPSSRCNFFLWS 604
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 164 RLTFKMRFYRLLQIRAEALLPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMD 223
Query: 93 SMLVE---SGGS----FFDVFRSKHPERREAYTCW 120
+L + GGS F D +R HP++ A+TCW
Sbjct: 224 GLLSKLDCQGGSQVGAFIDAYRCFHPKQERAFTCW 258
>gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
Length = 580
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 104/505 (20%), Positives = 177/505 (35%), Gaps = 113/505 (22%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVILAGDLNIIRSEMDSSNIAESLRKEGILMDEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGSVIGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRSWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGV 287
++ + + R ++ G + G + + G T D + ++ R ++ + V
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGGDVLQIENRGTTSDTAASLSRKMSGAGGTACANNV 402
Query: 288 YCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQL 347
+ + G +E R + T G +N S D A+ KA GQ
Sbjct: 403 GAAVALAPPRG--NTGLERGRQTKRDGEQPTELGGPANKKSKSSSD-AKVKASN---GQR 456
Query: 348 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 407
+L+ FF + V+ D S + V + + P+++ S++ P+
Sbjct: 457 TLQGFFKPKV-VASDTATSAGGLAPADRKQV---PVRERTPPQANGGSSQAPIPSPKTPT 512
Query: 408 HELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 464
+ S V D E K W ++ L + +P C+ H E C
Sbjct: 513 EPIVAATKLFSPVKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-HDESC 555
Query: 465 VARVVKKPGPTFGRRFFVCARAEGP 489
++ V KKPG GR F++C R GP
Sbjct: 556 ISLVTKKPGVNCGRSFYICPRPLGP 580
>gi|62085798|gb|AAX63290.1| DNA lyase [Beauveria bassiana]
gi|62085850|gb|AAX63316.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 113/509 (22%), Positives = 187/509 (36%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
+ EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RFEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V ++E P +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQVP----ARERTPLQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|378734461|gb|EHY60920.1| AP endonuclease 2 [Exophiala dermatitidis NIH/UT8656]
Length = 635
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 196/520 (37%), Gaps = 118/520 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF---- 91
F SF + + R L+ G+R+ VGD+NI+ ID A K+ W
Sbjct: 169 FRTSFLNVLDARIRNLVKMGKRVVWVGDMNISREEIDTAAAEESMRKHGIDAAEWISTPA 228
Query: 92 RSMLVE--SGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R ML + GG +DV R+ H RR YTCW + A NYG+RID
Sbjct: 229 RRMLNQLLVGGKVRGERDEGRETAIMWDVCRAFHEGRRGMYTCWETKVNARPGNYGSRID 288
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+I+C+ HD++ D+ W N + L GSDH
Sbjct: 289 YIICS-------HDMR----------------DW--WSDAN---------IQEGLLGSDH 314
Query: 197 APVYMCLGEVPEIPQHSTPSLASRYLP--IIRGVQQTLVSVLMKREVAKQGKSC--KFSG 252
PVY L + I T L P + GV+Q RE + C SG
Sbjct: 315 CPVYAVLKDKVLINGKETHVLDLMNPPGMFVEGVRQ--------REWTTK---CLLPLSG 363
Query: 253 SLPAE---SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS-----SNQESEGEFTKTI 304
L E S D + +S + ++ QGV + S +E T +
Sbjct: 364 KLIQEFYKRQSIKDMLTRQPTLQKSKSTIDEA---QGVSTTPPSVQVSATGTEPTTTPSQ 420
Query: 305 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
+ R++ + ST ++++ A++KAK ++ +S K +++S +
Sbjct: 421 SDEREAVSKTDFSTCPSSTTSY--------AKRKAKTNETLSSVKRS---KSASISTPNG 469
Query: 365 NSITDTSLN----VNNSVTDTSLSQEEVPESHHHSNKI-PVTDYSCSVHELHGVNSS--- 416
+ SL S TD+ ++Q PE S + P + S E V +S
Sbjct: 470 SGKGQQSLKGFFAAKPSTTDSKMTQP--PEHSPQSGVLRPASIISNGGAEATNVLTSMAT 527
Query: 417 --------VCSHD-QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 467
+ S D E G F+ + W ++ P C+ H EPC
Sbjct: 528 AADATTEALSSKDGMTEGSGPEFISTPAPSKTKHTWGKL--FSRPVAPKCE-HDEPCKIM 584
Query: 468 VVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KKPG GR F++C R GP+ E C F WA
Sbjct: 585 VTKKPGVNCGRSFWMCNRPLGPSGKQEKGTQWRCNTFIWA 624
>gi|62085874|gb|AAX63328.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 113/509 (22%), Positives = 188/509 (36%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP-ESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V ++E P +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQVP----ARERTPLQANGVSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|340372931|ref|XP_003384997.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Amphimedon queenslandica]
Length = 438
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
+W+++ + PLC GHKEP V RVVKKPGP R+F+VC R +G +P A+C +FK
Sbjct: 377 DWQKVFK-APPKAPLCSGHKEPAVLRVVKKPGPNHNRKFYVCGRPDGSKHDPNASCNFFK 435
Query: 502 W 502
W
Sbjct: 436 W 436
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAK----NEFR 88
+L + + F S ++ R + L G+ + + GD N ID + P F K E
Sbjct: 152 RLPYKIHFLSVLHERTKRLQAGGKDVLICGDFNCVLDIIDSAAMEDMPTFTKEPKTKELL 211
Query: 89 IWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ F S + D +R HP R +YTCW + TG+ Q NYG RID+IL +
Sbjct: 212 LSFISKTPPITNEVLLDTYRYLHPTERGSYTCWCTATGSRQLNYGQRIDYILAS 265
>gi|353237115|emb|CCA69095.1| related to APN2-AP endonuclease, exonuclease III homolog
[Piriformospora indica DSM 11827]
Length = 715
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 79/193 (40%), Gaps = 43/193 (22%)
Query: 17 MVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQ-GRRIFVVGDLNIAPAAIDR 75
M +L C VR + N F + R L+ + GR + V+GDLN A ID
Sbjct: 112 MFVLINVYCVADSADVRYHYKMN--FYYLLQERVRILIEEEGREVIVLGDLNSTAAPIDH 169
Query: 76 CDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN 130
+AG ++ F R W R + G D+ R + P R YTCW + A + N
Sbjct: 170 VEAGLPKYRDVFYEPLHRSWLRDW-ISPVGPLVDIVRERFPTREGMYTCWNTKINAREGN 228
Query: 131 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTR 190
YGTRID IL P L Q V E DI PS
Sbjct: 229 YGTRIDLILIT-PGLRQ------------WVKEADI-----------QPS---------- 254
Query: 191 LEGSDHAPVYMCL 203
++GSDH PV++ L
Sbjct: 255 IKGSDHCPVFIDL 267
>gi|170102771|ref|XP_001882601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642498|gb|EDR06754.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 650
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----------- 85
++ + F + R L+ +GR + VVGDLN A ID C+ AK
Sbjct: 167 KYKMDFHRLLEMRVVGLIKEGREVMVVGDLNACAAIIDHCEGHLMVAKGLAEGLQGEEGF 226
Query: 86 ---EFRIWFRSMLVES-----GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
+ R W R LV GG D+ R PER+ YTCW + A NYGTRID+
Sbjct: 227 WGKDSRRWMRGFLVPEDEGMPGGFMIDIVRKLWPERKGMYTCWNTKISARDSNYGTRIDY 286
Query: 138 IL 139
IL
Sbjct: 287 IL 288
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------- 490
EW + L P C H E V K G G+RFF+CAR GP
Sbjct: 559 EWTNL--LAPIQPPKCIVHGELAKELTVTKQGANKGKRFFICARPVGPGYDKGRGERLRE 616
Query: 491 -SNPEANCGYFKWA 503
+P C +FKW+
Sbjct: 617 HVDPHWKCDFFKWS 630
>gi|62085786|gb|AAX63284.1| DNA lyase [Beauveria bassiana]
gi|62085844|gb|AAX63313.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 108/509 (21%), Positives = 181/509 (35%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVIGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGI 283
++ + + R ++ G + G P N G T D + + ++ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNV 401
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
V + + +E R + + T +N S D KAK S
Sbjct: 402 GAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN 452
Query: 344 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 453 -GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S + D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPIKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085822|gb|AAX63302.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/508 (21%), Positives = 186/508 (36%), Gaps = 120/508 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ +L+ FF ++ V+ D S + + V + + +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTLLQANGVSSQAPVPSPK 508
Query: 405 CSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHK 461
+ S D E K W ++ L + +P C+ H
Sbjct: 509 TPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-HD 551
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 552 EPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085808|gb|AAX63295.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/508 (21%), Positives = 186/508 (36%), Gaps = 120/508 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEFR- 88
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE++
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 89 IWFRSMLVES--GGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ R +L + GG+ F D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS--TGDTEDCS-ENVDRSLNNYCDSGIL 284
++ + + R ++ G + G P N T DT S + R+ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENRGVTSDTAASSGTTMSRAGGMACTNNVG 402
Query: 285 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 344
V + + +E R + + T + +N S D KAK S
Sbjct: 403 AAVALAPPRANT------GLERGRQTKRDSEQPTESGAPANKKSKSFSD---AKAKASN- 452
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ +L+ FF ++ V+ D S + + V + + +++ S++ PV
Sbjct: 453 GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTLLQANGVSSQAPVPSPK 508
Query: 405 CSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHK 461
+ S D E K W ++ L + +P C+ H
Sbjct: 509 TPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPKCE-HD 551
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 552 EPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085890|gb|AAX63336.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 110/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDLRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q SL+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALSLSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QVESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085790|gb|AAX63286.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 108/509 (21%), Positives = 183/509 (35%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVIGDRDDDRECAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLG----------EVPEI----------------PQHSTPSLASRYLPIIRG 227
SDH PVY + ++ E+ Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRARNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGI 283
++ + + R ++ G + G P N G T D + + ++ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNV 401
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
V + + +E R + + T +N S D KAK S
Sbjct: 402 GAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN 452
Query: 344 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V + +P+++ S++ PV
Sbjct: 453 -GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTLPQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|395331650|gb|EJF64030.1| DNase I-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 686
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 91/240 (37%), Gaps = 57/240 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAG-----PDFAKNEFR 88
+L F ++F + R L+ RR + V+GD+N+ A ID CD F + R
Sbjct: 166 RLPFKMNFHLLLQERVRRLVEDERREVVVLGDINVCAAPIDHCDGHLPSTVAAFYDHPAR 225
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
WFR + G DV R HP+R+ +TCW + T A + NYG RID++L L
Sbjct: 226 AWFRRW-IGPDGPLTDVIRQCHPDRKGLFTCWDTRTQARETNYGARIDYVLVTRGLL--- 281
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL----- 203
+ G + L GSDH PVY+ L
Sbjct: 282 -------------------------------PWIAAGDIQPALRGSDHCPVYVDLRDEIT 310
Query: 204 ---GEVPEI--PQHSTPSL------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 252
GE + TP L A+RY G Q L + K AK + G
Sbjct: 311 LASGETIALRDAMKQTPGLRDPPRTAARYWDEFAGRQMVLSAFFGKGAAAKTKTKTETDG 370
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 502
P C H EP V KPGP G+ F++CAR GP + C YFKW
Sbjct: 606 PRCTVHDEPARLYTVNKPGPNRGKTFYLCARPVGPGYDKGRGERLREEVDHRYRCNYFKW 665
Query: 503 A 503
A
Sbjct: 666 A 666
>gi|62085852|gb|AAX63317.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085854|gb|AAX63318.1| DNA lyase [Beauveria bassiana]
gi|62085856|gb|AAX63319.1| DNA lyase [Beauveria bassiana]
gi|62085858|gb|AAX63320.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085860|gb|AAX63321.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085862|gb|AAX63322.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085864|gb|AAX63323.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085866|gb|AAX63324.1| DNA lyase [Beauveria bassiana]
gi|62085868|gb|AAX63325.1| DNA lyase [Beauveria bassiana]
gi|62085870|gb|AAX63326.1| DNA lyase [Beauveria bassiana]
gi|62085872|gb|AAX63327.1| DNA lyase [Beauveria bassiana]
gi|62085876|gb|AAX63329.1| DNA lyase [Beauveria bassiana]
gi|62085878|gb|AAX63330.1| DNA lyase [Beauveria bassiana]
gi|62085880|gb|AAX63331.1| DNA lyase [Beauveria bassiana]
gi|62085882|gb|AAX63332.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q SL+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALSLSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QVESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|384246641|gb|EIE20130.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML 95
F L F + +R + L GR + ++GDLNI+ A ID CD GP F R +L
Sbjct: 107 FKLRFYEGLLHRIQTLRASGRCVILLGDLNISLAPIDSCDPGPIDAFTSRTDRRLLTRLL 166
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+GG F D AYTCW + +GA NYGTRID IL
Sbjct: 167 TSNGGPFLD-----------AYTCWSTASGARINNYGTRIDLIL 199
>gi|164657069|ref|XP_001729661.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
gi|159103554|gb|EDP42447.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
Length = 317
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----PDFAKNEFRIWFRSML 95
++F ++ R L+ +GR + VVGD+N+ + D C++ +F+ + R WF+++L
Sbjct: 1 MAFYHALEERVRSLINEGRHVIVVGDMNVVASPRDHCESARVPAAEFSAHPARQWFQAIL 60
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQ 152
G D+ R PER YTCW + A NYGTR+D+ L P + Q D+Q
Sbjct: 61 APQG-PLMDMTRHFFPERDRMYTCWNTLIDARASNYGTRLDYTLVTQGLEPWI-QHADIQ 118
Query: 153 SHNFVTCHVNECDILIDYK 171
+ H C I +D +
Sbjct: 119 PQVHGSDH---CPIYLDLR 134
>gi|62085834|gb|AAX63308.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 110/511 (21%), Positives = 182/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDNDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDS 281
++ + + R ++ G + G P N G T D + + ++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085794|gb|AAX63288.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 110/511 (21%), Positives = 182/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDNDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDS 281
++ + + R ++ G + G P N G T D + + ++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|302686738|ref|XP_003033049.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
gi|300106743|gb|EFI98146.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
Length = 697
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 89/245 (36%), Gaps = 60/245 (24%)
Query: 17 MVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC 76
+ +L C + ++++ + F + R L+ +GR + VVGDLN D C
Sbjct: 148 LFVLINVYCPNDGSEAQERMKYKMDFHRMLSVRVRGLIDEGREVIVVGDLNAVSDVGDHC 207
Query: 77 DA------------------GPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPE 112
+ G A+ F R W R LVE GG DV + PE
Sbjct: 208 EGALTVRKIIDEARKEGQEVGEKEAEEMFYDTMPARRWLRDSLVEHGGPLVDVCKRFWPE 267
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R+ YTCW + A NYG RID IL ++ + DI D K
Sbjct: 268 RKGMYTCWNTKISARASNYGARIDFILVT-------------PYLLPLIKHADIQPDVK- 313
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 232
GSDH PV + + E+ ++ PS L + G +
Sbjct: 314 --------------------GSDHCPVIVEFHD--EVDVNAIPSSVKANLSLPTGATRVS 351
Query: 233 VSVLM 237
+ LM
Sbjct: 352 LQALM 356
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 496
L P C H EP V K G GR F+VC+R GP +P+
Sbjct: 617 LAAPPPPRCYVHDEPAREFTVNKKGENKGRAFYVCSRPVGPGYDKGRAERRREDVDPQYK 676
Query: 497 CGYFKW 502
C +F+W
Sbjct: 677 CDFFRW 682
>gi|62085838|gb|AAX63310.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 180/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V + Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRKWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDS 281
++ + + R ++ G + G P N G T D + + ++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ S +S T + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKAVAS----DSATSAGELAPADRKQLPTRERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085886|gb|AAX63334.1| DNA lyase [Beauveria bassiana]
gi|62085888|gb|AAX63335.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QIESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085820|gb|AAX63301.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 111/511 (21%), Positives = 186/511 (36%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V + Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRKWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQ 285
++ + + R ++ G + G P N G T D + + ++ +G
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGMTM---IGAG--- 393
Query: 286 GVYCSSS----NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
G+ C+++ + +E R + + T +N S D KAK
Sbjct: 394 GMACTNNVGAAAALAPPRANTGLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SRKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085836|gb|AAX63309.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 111/511 (21%), Positives = 186/511 (36%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V + Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRKWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQ 285
++ + + R ++ G + G P N G T D + + ++ +G
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGMTM---IGAG--- 393
Query: 286 GVYCSSS----NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
G+ C+++ + +E R + + T +N S D KAK
Sbjct: 394 GMACTNNVGAAAALAPPRANTGLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVL 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SRKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085800|gb|AAX63291.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QIESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|340519815|gb|EGR50053.1| DNA lyase [Trichoderma reesei QM6a]
Length = 567
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 176/497 (35%), Gaps = 117/497 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF- 91
++EF + F ++ R L+ +G+ + + GDLN++ A D + + K + W
Sbjct: 152 RVEFRMEFLQALDARVRNLVAEGKEVILAGDLNVSRAEADSTNIVENLRKEGLSMEEWMN 211
Query: 92 ---RSML--VESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R + + GG+ +D+ R HP R TCW + N G+
Sbjct: 212 LPSRRLFNHLVFGGTVQGERDVGREQPVLWDLCREFHPAREGMNTCWDTKRNTRPANNGS 271
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ H L+ F ++ E L G
Sbjct: 272 RIDYVLCS-------HGLRDW-FTEANIQEG--------------------------LMG 297
Query: 194 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 253
SDH PV+ L +V +T + L ++ V RE + S
Sbjct: 298 SDHCPVFATLADV-----VTTGNEKVSLLHLVNPVGMFDRDGRRLREWHPK-DVLPLSAK 351
Query: 254 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 313
L E + D +G+ Y SS GE T E DSA
Sbjct: 352 LIPEFDRRQSIRDMFTK---------KAGVRPSSYSSSLGA---GEPTPEGEPAGDSARS 399
Query: 314 ASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHKRSNVSHDDNNSITDT 370
+ T+ S + AR A+ + L GQ +L+ FF +S
Sbjct: 400 EQLESKTKTSHAADHGLGLSDARHSARSNPLLAQGQTTLQGFFQP---------SSAKRV 450
Query: 371 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 430
+ + T T+ + P +SC ++ + D
Sbjct: 451 TKGRDGDATTTASANTSAP-------------FSC-----EQTTAAAAALPSDRLVFDPI 492
Query: 431 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
L KE W ++ L + +P C+ H EPC++ V K+PG G F++CAR GP+
Sbjct: 493 LAKE-------SWSKL--LGKRKLPRCE-HNEPCISLVTKRPGVNCGMSFYICARPLGPS 542
Query: 491 SNPEAN----CGYFKWA 503
E CG F W+
Sbjct: 543 GEKERGSEWRCGTFIWS 559
>gi|367041942|ref|XP_003651351.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
gi|346998613|gb|AEO65015.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
Length = 640
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 125/557 (22%), Positives = 202/557 (36%), Gaps = 141/557 (25%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF ++ ++ R L+ G+++F+ GDLNI + +D
Sbjct: 150 FVLIGVYSPATRDE----TRTEFREAYIDAIDVRVRNLVAMGKQVFLCGDLNIVRSPLDT 205
Query: 76 CDAGPDFAK-----NEF----------RIWFRSMLVESGGS--------FFDVFRSKHPE 112
K +EF + F +V GG +D+ R HP
Sbjct: 206 AGLAERLRKEGMTLDEFMSTPPRRLLNHLVFGGTVV--GGRDEGREEPVLWDLCREFHPT 263
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R +TCW + A N+G+RID++LC+ F+ ++ E
Sbjct: 264 RAGMFTCWETKKNARPGNFGSRIDYVLCSSGIKDW--------FIDANIQEG-------- 307
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP--IIRGVQQ 230
L GSDH PVY +G+ + P + P + +G ++
Sbjct: 308 ------------------LLGSDHCPVYATIGDAVSFGDTNVP-IEDVMNPAGMFKGGKR 348
Query: 231 -----------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTG---DTEDCSENVDRSLN 276
T ++ + + + + F S P+ ST D +D +D + N
Sbjct: 349 LREWSSKDLLPTSAKLIPEFDRRQSIREMFFKKSAPSAKTSTQAQMDNQDGRGVLD-AAN 407
Query: 277 NYCDSGILQ--------------GVYCSSSNQESEGEFTKTIENCRDS-ANVASHSTITQ 321
+GIL+ V SS+ S K++ R + ++ A +
Sbjct: 408 GVKTTGILENNTTPGSDRNPTIASVSVSSTTPNSAASPQKSVPTKRQAESSTAVRRPQKK 467
Query: 322 GSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDT 381
G N ++RA + Q +LK FF ++ V +D T
Sbjct: 468 GKGN------LNRAGSTNSTTGSSQSTLKGFFKPKTPVPDED-------------PPTPA 508
Query: 382 SLSQEEVPESHHHSNKIPVTDYSC-SVHELHGV--NSSVCSHD-------QDEKKGKRFL 431
E PE D C V G NS + D Q +K
Sbjct: 509 QGVDESSPELK--------ADRDCPGVQTASGAESNSGTSTGDDVDNTLEQSQKPEGSSS 560
Query: 432 DKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
+K + + E W ++ L + +P C+ H E C V KKPG GR FF+CAR GP+
Sbjct: 561 EKVFDPIQAKESWGKL--LGKRVVPKCE-HGEDCQMLVTKKPGINCGRSFFMCARPLGPS 617
Query: 491 SNPEAN----CGYFKWA 503
+ E C F W+
Sbjct: 618 GDKEQGTEFRCRTFIWS 634
>gi|298706356|emb|CBJ29365.1| potential endonuclease [Ectocarpus siliculosus]
Length = 696
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML 95
F F +++ R + +GR + +VGDLN + +D D F + + W R ML
Sbjct: 183 FKRDFLATLEARIFEIRSRGRGVVLVGDLNACASQLDHGFTMTDSEFYASNWSKWIRGML 242
Query: 96 VESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
D FR HP+R+ A+TCW + TGA NYGTRID+I+
Sbjct: 243 GLGSPEPPRLVDCFRHLHPDRKSAFTCWNTQTGARDNNYGTRIDYIIAG----------- 291
Query: 153 SHNFVTCHVNECDILIDY 170
+F + CDI+ D+
Sbjct: 292 -TDFADRALRACDIMPDF 308
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP-ASNPEANCGYFKW 502
S P C+ H EP + R V KPGP RRF+ CAR+ G ++ A C +F+W
Sbjct: 620 SAPTCE-HGEPSIQRTVLKPGPNHNRRFYTCARSAGNWPTDRNARCTFFQW 669
>gi|62085812|gb|AAX63297.1| DNA lyase [Beauveria bassiana]
gi|62085814|gb|AAX63298.1| DNA lyase [Beauveria bassiana]
gi|62085824|gb|AAX63303.1| DNA lyase [Beauveria bassiana]
gi|62085826|gb|AAX63304.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGQRVRNWDQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QVESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 KVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|384498310|gb|EIE88801.1| hypothetical protein RO3G_13512 [Rhizopus delemar RA 99-880]
Length = 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 78/194 (40%), Gaps = 43/194 (22%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFR 88
EF + + + R E L +G+++ +VGD+N ID CD DF R
Sbjct: 96 EFIMDYYGCVQKRIEDYLAKGQQVVLVGDVNAVHDTIDHCDPKESMRQHGLKDFKDLPHR 155
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
W L+ GS D+ R HP+R+ +TCW + A NYGTRID++L +
Sbjct: 156 RWV-DRLIGPQGSMIDMARYYHPDRKGMFTCWNTRINARPANYGTRIDYVLAS------- 207
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
H LQ FV + ++ GSDH PVY PE
Sbjct: 208 HGLQP-RFVYADIQ--------------------------PQIIGSDHCPVYADFAIDPE 240
Query: 209 IPQHSTPSLASRYL 222
+ + P S L
Sbjct: 241 QMRCAQPDTTSPLL 254
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 434 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 493
E + + W + Q E P C GH PC+ R V K G GR F+VC++ GP P
Sbjct: 288 EIKDKQVTAWSALFQAPER--PRCSGHDAPCLERTVTKKGKNLGRTFYVCSKPVGPQDGP 345
Query: 494 EAN--CGYFKW 502
+ + C +F W
Sbjct: 346 KEHYSCHHFSW 356
>gi|440633305|gb|ELR03224.1| hypothetical protein GMDG_01207 [Geomyces destructans 20631-21]
Length = 657
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 116/538 (21%), Positives = 187/538 (34%), Gaps = 129/538 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF------AKNEFRIWF 91
F L F + + R L+ G+R+ + GDLN+ ID +A A+ F
Sbjct: 169 FRLGFLNVLDARIRNLVNAGKRVILAGDLNVIREEIDTANAQERMRKEGVTAEEFFSAPA 228
Query: 92 RSM---LVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R + LVE G + D+ R H RR +TCW A N+G+RID
Sbjct: 229 RRLINHLVEHGNVYGERDECRARPVLTDICRKFHNRRRGMFTCWDQKKNARPGNFGSRID 288
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+I CA +D K W + + L GSDH
Sbjct: 289 YI-CAS-------------------------LDCKDWFA--------ESNIQEGLMGSDH 314
Query: 197 APVYMCLGEVPEIPQHSTP--------------------------SLASRYLPII---RG 227
PVY + + ++ T +++ LP R
Sbjct: 315 CPVYAVISDKVQLDGRETDIKDVMNAVGMFQDGFRQRDWTIKDLLPTSAKLLPEFDRRRN 374
Query: 228 VQQTLVSVLMKREVAKQGKS----CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 283
++ + + + QG+S K ES +TGD +E R L + +
Sbjct: 375 IRDMFIKMPPATPLT-QGESLTSLAKVGSEPRPESPTTGDGCGVAE---RGLRDSFSTSP 430
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
GV S K + + ++ S Q P + +A +
Sbjct: 431 QPGVVKEKEGDTSSCGTGKVVNSTSSKGKRSAESLHLQRDQKRTKPANA-KALTSKNRQG 489
Query: 344 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
+ Q +L+ FF ++ + N +N N + ++ S+H + P +
Sbjct: 490 MAQSTLQGFFTPKTQIPRGQPN------VNANTPPSSST-------GSNHSPSPYPRKEL 536
Query: 404 SCSVHELHGVNSSVCSHDQDE-----KKGKRF-----LDKERNNVALL----EWRRIQQL 449
+ + + SH+ E K+ K +D E + + + W RI L
Sbjct: 537 ALGPDQ--DTQEDLSSHNASEGYNAPKEAKYLSTPVDIDNEEDIIDPIITKESWSRI--L 592
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P C+ H +PC KKPG GR F++CAR GP+ E CG F W+
Sbjct: 593 GTRIAPRCE-HNQPCRMLSTKKPGMNCGRSFYICARPLGPSGEKERGTQWRCGTFIWS 649
>gi|62085806|gb|AAX63294.1| DNA lyase [Beauveria bassiana]
gi|62085816|gb|AAX63299.1| DNA lyase [Beauveria bassiana]
gi|62085818|gb|AAX63300.1| DNA lyase [Beauveria bassiana]
gi|62085828|gb|AAX63305.1| DNA lyase [Beauveria bassiana]
gi|62085832|gb|AAX63307.1| DNA lyase [Beauveria bassiana]
gi|62085842|gb|AAX63312.1| DNA lyase [Beauveria bassiana]
gi|62085848|gb|AAX63315.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q SL+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALSLSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QVESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D A+ KA
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD-AKVKASN 452
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 453 ---GQRTLQGFFKPKA-VASDTATSAGELAPADREQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|308803490|ref|XP_003079058.1| APEX nuclease (ISS) [Ostreococcus tauri]
gi|116057512|emb|CAL51939.1| APEX nuclease (ISS) [Ostreococcus tauri]
Length = 524
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPA-AIDRCDAGPDFA--KNEFRIWF 91
+++F F ++ R L +GRR+ + GD NIAP +DR P KNE R W
Sbjct: 216 RIDFKRDFLRALEERLTSLRSRGRRVIMCGDWNIAPNWKLDRAHDDPRAVEPKNESREWL 275
Query: 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+L + G DVFR HP + A+TCW +GA+ +YG+RID+ LC
Sbjct: 276 TRVLGQDG--MCDVFREVHPNVK-AFTCWNVASGAQINDYGSRIDYFLC 321
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 449 LMETSIPLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
L + + P C GH E C RVVKK P F R FF C R GP +NP +CG+F W
Sbjct: 463 LAKMAPPKCAGHGETCKVRVVKKRESPHFARVFFCCPRPAGPRTNPACDCGFFAW 517
>gi|367021856|ref|XP_003660213.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
gi|347007480|gb|AEO54968.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
Length = 644
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/548 (22%), Positives = 200/548 (36%), Gaps = 120/548 (21%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + E+ +F +M R L+ G+++F+ GDLNI +D
Sbjct: 150 FVLIGVYSPATRDE----TRTEYREAFIDAMDARVRNLVAMGKQVFLCGDLNIIRDELDA 205
Query: 76 CDAGPDFAKN-----EF-----RIWFRSMLVESGGS-------------FFDVFRSKHPE 112
K EF R + +L GG +D+ R HP
Sbjct: 206 AGLPERLRKEGVTLEEFFATHSRRFLNQLLF--GGRVIGERQEGREQPVLWDLCREFHPT 263
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R YTCW + A N+G RID++LC+ F+ ++ E
Sbjct: 264 RAGMYTCWETRKNARPGNFGNRIDYVLCSSGIKDW--------FIDSNIQEG-------- 307
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI-------------PQHSTPSLAS 219
L GSDH PVY + + ++ P +
Sbjct: 308 ------------------LLGSDHCPVYATIADTVDVGGSQVHIEDIMNPPGMFKDGVRQ 349
Query: 220 R------YLPIIRGV------QQTLVSVLMKREVAKQGKSCK----FSGSLPAESNSTGD 263
R LPI + +Q++ + K+ A + S S P ++ G
Sbjct: 350 REWCQKDLLPISAKLIPEFDRRQSIKDMFFKKASASAKTTSSPNTISSQSTPTDTVPGGG 409
Query: 264 TEDCSENVDRSLNNYCDS-GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 322
+++ ++ S++ D + ++SN + K I R +A+ S + +
Sbjct: 410 SDETQKDSTVSMSQAIDQPASTTTLPNTASNNITSVPPQKPIPQKRQAASSTSPNRPQKK 469
Query: 323 SSNHISPFHVDRARKKAKKSQLG--QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTD 380
+S R+ + K+ G Q SLK FF ++ ++ + + N ++T
Sbjct: 470 GKLALS-------RESSSKTTAGFSQSSLKGFFKPKTPTAN--ATAAIEAGDTTNPAITP 520
Query: 381 TSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV-A 439
E PES T S NSS S + + F DK + + A
Sbjct: 521 DPNPSE--PESKQD------TSASQGNSSQSTKNSSGDSVGESPRTESSFTDKVFDPIQA 572
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 496
W ++ L + +P C+ H E C V KK G GR FF+CAR GP+ E
Sbjct: 573 KDSWSKL--LGKRVVPKCE-HGEDCQMLVTKKAGVNCGRAFFMCARPLGPSGEKEQGTEF 629
Query: 497 -CGYFKWA 503
C F W+
Sbjct: 630 RCRTFIWS 637
>gi|452987163|gb|EME86919.1| hypothetical protein MYCFIDRAFT_194837 [Pseudocercospora fijiensis
CIRAD86]
Length = 622
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 106/499 (21%), Positives = 182/499 (36%), Gaps = 106/499 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAK 84
F F ++ +R L+ G+ + +VGDLN+ ID +GP DF
Sbjct: 167 FRHGFVCALDHRIRNLIKAGKNVILVGDLNVTRHEID---SGPTLEEMRKGLITHEDFIS 223
Query: 85 NEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F L++ G F+D R HP+R+ YT W + A N+G+
Sbjct: 224 GPNRRIFNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGS 283
Query: 134 RIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
RID +L + + ++Q + H C + ID++ G L
Sbjct: 284 RIDFVLVSEALRSWVKYGNIQEGLLGSDH---CPVYIDFEN-------EVTVNDGKIALL 333
Query: 192 EGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFS 251
+ + V++ E STP +++ +P ++T+ S+ + K +
Sbjct: 334 DIMNPPAVFVGGERKQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ----- 387
Query: 252 GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 311
P S +D V E+EG +
Sbjct: 388 ---PTPPGSVAQADDSQPAV-----------------------ETEG------------S 409
Query: 312 NVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTS 371
+ I+ ++ PF ++ K ++ GQ SLK FF +S +
Sbjct: 410 TAPAKRKISVSTTPKEYPFKKQKSDIKTAPTK-GQQSLKGFFQAKS----------VPIT 458
Query: 372 LNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL 431
++ D E+ + ++ + + S + ++S + D D ++F
Sbjct: 459 AAAQSAEKDLKNETEDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSP-RKFA 517
Query: 432 DKERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 488
K +A E + Q S P+ C+GH EPC + KK G GR F++CAR G
Sbjct: 518 SK----LASAEKSQHQWGALFSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLG 573
Query: 489 PASNPEAN----CGYFKWA 503
P+ E CG F W+
Sbjct: 574 PSGEKERGTQWRCGTFIWS 592
>gi|346320505|gb|EGX90105.1| DNA lyase [Cordyceps militaris CM01]
Length = 613
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 117/529 (22%), Positives = 188/529 (35%), Gaps = 140/529 (26%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 157 RIEFRQSFVEALDARIRNLITAGKQVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQS 216
Query: 91 ------FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F ++ E +D+ R HP R +TCW + N G+
Sbjct: 217 LPARRIFNQLVFEGTVIGDRDTGREHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGS 276
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D V ++ E L G
Sbjct: 277 RIDYILCS--------DGIKDWIVDSNIQEG--------------------------LMG 302
Query: 194 SDHAPVYMCL-------GEVPEIPQHSTPSLASRYLPIIRGVQQ--------TLVSVLMK 238
SDH PVY + G + + PS +R +Q L+ +
Sbjct: 303 SDHCPVYATMSDKVTKNGTEMTLAEAMNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDR 362
Query: 239 REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEG 298
R ++ + K S +L G + N D + +SG +SS ES
Sbjct: 363 RRNIREMFTSKASQTLLHPEKIGGQSLQI-RNADMAAYTARNSGT-----TASSGAES-- 414
Query: 299 EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN 358
NC + A+ ++ G +N++ ++ R + K+ G +KR
Sbjct: 415 ------TNCFE----AAAPLVSVGGTNNV---NLQRGSQTKKRRPDGPAQAALPTNKRGK 461
Query: 359 VSHDDNNSITDTSLN-----------VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 407
S D T+L NNSVT + E+VP S ++PV +
Sbjct: 462 NSRDTKTKTGQTTLQGFFKPKTVASLENNSVTSVA---EQVPAG---SGRVPVRAQEAPL 515
Query: 408 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 467
+G S D E K W ++ L + +P C+ H EPC++
Sbjct: 516 A--NGGLSPAKVFDPIEAKDS--------------WSKL--LGKRVVPKCE-HDEPCISL 556
Query: 468 VVKKPGPTF---------GRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KKPG R F++C R GP+ + E + CG F W+
Sbjct: 557 VTKKPGVNCVLAGEAVDQRRSFYICPRPLGPSGDKERDTEWRCGTFIWS 605
>gi|62085802|gb|AAX63292.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 183/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+ILC+ D FV ++ E L
Sbjct: 257 GSRIDYILCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V + Q +L+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVAKDGRKIDLAEVMNPANMFQDGRRVRKWEQRDALALSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDS 281
++ + + R ++ G + G P N G T D + + ++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + + + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDFATSAGELAPADRKQL---PTRERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++C R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|409040708|gb|EKM50195.1| hypothetical protein PHACADRAFT_153651 [Phanerochaete carnosa
HHB-10118-sp]
Length = 496
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RI 89
+L F +++ + R + +GR + V+GD+NI D CD + F R
Sbjct: 148 RLPFKMNYHLLVAERVRRFIDEGREVIVMGDMNICATPQDHCDGHLTSVREVFWDHPARA 207
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-K 148
WFR L + G D R+ P R+ +TCW T A + NYGTR+D+IL L K
Sbjct: 208 WFRHWL-DPDGPMVDAVRTFWPARKGMFTCWNLRTQARETNYGTRVDYILVTKGLLKWVK 266
Query: 149 H-DLQSHNFVTCHVNECDILID 169
H D+Q + H C I ID
Sbjct: 267 HGDIQPSVKGSDH---CPIYID 285
>gi|169850286|ref|XP_001831840.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
gi|116507128|gb|EAU90023.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
Length = 609
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCDA-------------GPD-FAKNEFRIWFRSMLVE---S 98
+ R + VVGDLN A ID C+ G + F E+R W R LV+ +
Sbjct: 191 EKREVIVVGDLNACAAVIDHCEGELMIKKGQAMGLEGEEGFWGKEYRRWIRDWLVKEDGT 250
Query: 99 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
GG+ D+ R P+R YTCW + A + NYGTRID IL
Sbjct: 251 GGTLVDITRKLWPDREGMYTCWNTKISARETNYGTRIDFILV 292
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 424 EKKGKRFLDKERNNVALLEWRRIQQ----LMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E+ + FL +++ + R QQ L P CK H EP V KPGP G+R
Sbjct: 537 EQGQEPFLPSSQSSQPETQERSKQQWTSLLAPIQPPKCKAHGEPAKEYTVNKPGPNKGKR 596
Query: 480 FFVCAR 485
FF+C+R
Sbjct: 597 FFICSR 602
>gi|62085792|gb|AAX63287.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 107/509 (21%), Positives = 183/509 (35%), Gaps = 122/509 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E+ +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEATVIGDRDDDRECAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
ID+ILC+ D FV ++ E L G
Sbjct: 259 PIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLG----------EVPEI----------------PQHSTPSLASRYLPIIRG 227
SDH PVY + ++ E+ Q +L+++ +P
Sbjct: 285 SDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRARNWEQRDALALSAKLIPEFD- 343
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGI 283
++ + + R ++ G + G P N G T D + + ++ C + +
Sbjct: 344 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNV 401
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
V + + +E R + + T +N S D KAK S
Sbjct: 402 GAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN 452
Query: 344 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V + +P+++ S++ PV
Sbjct: 453 -GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTLPQANGGSSQAPVPSP 507
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S D E K W ++ L + +P C+ H
Sbjct: 508 KTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 550
Query: 461 KEPCVARVVKKPGPTFGRRFFVCARAEGP 489
EPC++ V KKPG GR F++C R GP
Sbjct: 551 DEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|307105550|gb|EFN53799.1| hypothetical protein CHLNCDRAFT_136485 [Chlorella variabilis]
Length = 1072
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 51/175 (29%)
Query: 19 ILF--YSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC 76
+LF Y + + ++++ L F S++ RW LL QGR + VGDLNI P +D
Sbjct: 158 VLFNIYGPAITKQEVAEDRMQYKLRFFSALELRWRDLLRQGRAVVAVGDLNICPTPLDYP 217
Query: 77 DAGPDFAK--NEFRIWFRSML---------------------------VESGGS------ 101
A F + R+W R +L S G+
Sbjct: 218 VADLQFFRPSRPDRLWLRRLLHGSTTTGGSNSGGGGGDQSPPAAAAAAAGSNGNGVAGIY 277
Query: 102 --------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
D FR+ HP R+ A+TCW + T A NYG+RID +L AG
Sbjct: 278 GAGASSSNGGSGGILVDTFRAFHPTRQNAFTCWSTATSARVNNYGSRIDLVLTAG 332
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGP----TFGRRFFVCARAEGPASNPEANCG 498
WR IQQ + +P C GH+EP V + V K GP GR F+ CAR +GP P C
Sbjct: 564 WRTIQQRFQ--VPQCPGHREPAVLKKVNKSGPNKGNAAGRYFYTCARPDGP--KPHGKCE 619
Query: 499 YFK 501
+FK
Sbjct: 620 FFK 622
>gi|168008755|ref|XP_001757072.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 41/190 (21%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID---RCDAGPDFAKNEFRI 89
R +L+F + + ++ + L+ G+ I +VGD N+A ID R ++ E R
Sbjct: 215 RPRLDFKMRYLKALEQTCDDLVRSGKHIVIVGDFNVAHKDIDVHSRWKVEEIYSLEE-RE 273
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W L + D++R HP+ + ++ W + A N G RID+ +C
Sbjct: 274 WLDGFL----SRYIDLYRHFHPDEKNIFSVWDQKSDARTRNEGLRIDYAIC--------- 320
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEI 209
+ F+T V E DI+ K+W SDHA V + L E P +
Sbjct: 321 ---NEGFLT-EVLETDIVKMQKQW--------------------SDHAAVVVTLKEQPNL 356
Query: 210 PQHSTPSLAS 219
P H P+L+S
Sbjct: 357 PPHPAPALSS 366
>gi|387192399|gb|AFJ68655.1| AP endonuclease 2 [Nannochloropsis gaditana CCMP526]
Length = 523
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/518 (22%), Positives = 184/518 (35%), Gaps = 118/518 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD--AGPDFAKNEFRIWFRSML 95
F +F++++ R GR + + GDLN A D + + + A + W R++L
Sbjct: 43 FKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLL 102
Query: 96 ---------VESGGS------------------------FFDVFRSKHPERREAYTCWPS 122
+ GG D FR HP R +A++CW +
Sbjct: 103 GSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCN 162
Query: 123 NTGAEQFNYGTRIDHILCA-GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSY 181
T A NYG RID+IL + G C + + + H+ E + + +
Sbjct: 163 QTAARHTNYGRRIDYILASPGLCGYAEGP-----GIVAHLEEAAVRQEVR---------- 207
Query: 182 RWKGGMSTRLEGSDHAPVY--MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 239
GSDH PV ++ + S PS S RG + L+ L
Sbjct: 208 -----------GSDHCPVTARFSFSKLTDGSYLSLPSPFSE-----RGSGRILLPPLCTG 251
Query: 240 EVAK-QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN--------YCD--SGILQGVY 288
+ + + L S T S VD+S +N CD S ++
Sbjct: 252 NYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLH 311
Query: 289 CSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLS 348
S + +G ++ C ++ + T ++ S+ + KSQ+ L+
Sbjct: 312 ASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVP-----------TKSQM-TLT 359
Query: 349 LKSFFHKRSNVSHDDNNSITDTSLNVNNS---VTDTSLSQEEVPESHHHSNKIPVTDYSC 405
R+ D++ T+ + S V+ +L++E+ HS+ + T S
Sbjct: 360 HYGIASTRAK-GGDESREATEEKMTTGTSASFVSSKALAREQ------HSSTLYATKSSS 412
Query: 406 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCV 465
L+ R V L +R + + P C+GH EP V
Sbjct: 413 LSSSTMSAPQPGV-----------MLEATRREVFLSAFRSQRD----NTPRCQGHNEPMV 457
Query: 466 ARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFKW 502
R VKK GR FF CAR G + EA C F W
Sbjct: 458 RRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 495
>gi|159469514|ref|XP_001692908.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277710|gb|EDP03477.1| predicted protein [Chlamydomonas reinhardtii]
Length = 264
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 24/105 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE 97
F ++F ++ +R + L GRR+ V+GD NI+PAA DR A P
Sbjct: 108 FKMTFFRALQHRLDGFLAAGRRLVVLGDFNISPAAADRAGATP----------------- 150
Query: 98 SGGSFFDVFRSKHPER-REAYTCWPSNTGAEQFNYGTRIDHILCA 141
F P+R R+AYTCW +++GA N+G+RID IL A
Sbjct: 151 ------RTFEPHRPDRLRDAYTCWNTSSGARVNNFGSRIDLILAA 189
>gi|391868669|gb|EIT77879.1| apyrimidinic endonuclease [Aspergillus oryzae 3.042]
Length = 627
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 87
F F M R L+ G+R+FV GDLNI+ ID A K +EF
Sbjct: 169 FRQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPA 228
Query: 88 RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LV SG + FD+ RS HP RR YTCW A NYG+RI
Sbjct: 229 RRLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRI 287
Query: 136 DHILCA 141
D++LC+
Sbjct: 288 DYVLCS 293
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 497
+W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 559 DWSKL--FTKKPVPKCEGHQEPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRC 616
Query: 498 GYFKWA 503
F WA
Sbjct: 617 PTFIWA 622
>gi|396469847|ref|XP_003838506.1| similar to DNA lyase [Leptosphaeria maculans JN3]
gi|312215074|emb|CBX95027.1| similar to DNA lyase [Leptosphaeria maculans JN3]
Length = 650
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 109/536 (20%), Positives = 175/536 (32%), Gaps = 149/536 (27%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNE 86
+F L F + R L G+ + + GDLN++ ID A ++
Sbjct: 189 DFRLGFLMMLDARIRNLKKMGKNLILTGDLNVSRDLIDTAKADDHMRAEGMTHEEYLSTP 248
Query: 87 FRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F +L +D+ R HP+R +T W A N+G+RI
Sbjct: 249 NRRIFNQLLFNGKVPGKRDKGREEPVLYDLCREYHPDREGMFTHWEQKINARPGNFGSRI 308
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D ILC+ I+ K W + + L GSD
Sbjct: 309 DFILCS--------------------------IEIKDW--------FMEANIQEGLMGSD 334
Query: 196 HAPVYMCLGEVPEI---------------------------------------PQHSTPS 216
H PVY + + P P+
Sbjct: 335 HCPVYAVTKDKVSVGRSQEAAAEAEHPEEEKHILDSMNPTGMFQGGVRLREYDPSRDMPA 394
Query: 217 LASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDR 273
L+ + LP R ++ + A +S G+ P+ + + + ++
Sbjct: 395 LSGKRLPEFTKRRNIRDMFSKKPALSKSASTTRSTLNEGTAPSSAMIADPSSTATTEANK 454
Query: 274 SLNNYCDSGILQGVYCSSSNQESEGEFT--KTIENCRDSANVASHSTITQGSSNHISPFH 331
+L S++N + T + E R SA+ + T+ + SN+ P
Sbjct: 455 AL----------APPTSTANGDKAPLVTPLNSPEKRRASASASPGKTLKRSKSNN--PVA 502
Query: 332 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 391
K GQ SLK FF RS T+ S +++E P S
Sbjct: 503 GSNPTK-------GQQSLKGFFLTRSKP-------------------TEPSPTKDEAPLS 536
Query: 392 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 451
+ +P D S G S + +E + + W ++ +
Sbjct: 537 VPSTPAVPTGDPSS--QSATGAPDLSVSQTSETYDPDPLATQEASRES---WSKL--FSK 589
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P C+ H EPC+ KKPG GR+F++C R GP+ E CG F W+
Sbjct: 590 KPTPRCE-HGEPCITLTTKKPGMNCGRQFYMCPRPIGPSGQKETGTQWRCGTFIWS 644
>gi|62085884|gb|AAX63333.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 182/511 (35%), Gaps = 126/511 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNY 131
R +L E G+ F D+ R HP R +TCW + N
Sbjct: 199 MPTRRILNQLLFE--GTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANV 256
Query: 132 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 191
G+RID+I C+ D FV ++ E L
Sbjct: 257 GSRIDYIFCS--------DGLKSWFVDSNIQEG--------------------------L 282
Query: 192 EGSDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPII 225
GSDH PVY + + V Q SL+++ +P
Sbjct: 283 MGSDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALSLSAKLIPEF 342
Query: 226 RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNN----YCDS 281
++ + + R ++ G + G P + S G T D + + +++ C +
Sbjct: 343 D--RRRNIKDMFSRTASQTGSQAEKIGDSP-QVESRGVTPDTAASSGTTMSGAGGMACTN 399
Query: 282 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 341
+ V + + +E R + + T +N S D KAK
Sbjct: 400 NVGAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKA 450
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 451 SN-GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVP 505
Query: 402 DYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCK 458
+ S D E K W ++ L + +P C+
Sbjct: 506 SPKTPTEPIVAATKLFSPTKVFDPIEAKE--------------SWSKL--LGKRVVPRCE 549
Query: 459 GHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
H EPC++ V KKPG GR F++ R GP
Sbjct: 550 -HDEPCISLVTKKPGVNCGRSFYISPRPLGP 579
>gi|400595545|gb|EJP63340.1| DNA lyase [Beauveria bassiana ARSEF 2860]
Length = 654
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 113/546 (20%), Positives = 189/546 (34%), Gaps = 145/546 (26%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 165 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 224
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 225 MPTRRILNQLLFEGTVIGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 284
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 285 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 310
Query: 194 SDHAPVYMCLGE--------------------------VPEIPQHSTPSLASRYLPIIRG 227
SDH PVY + + V Q +L+++ +P
Sbjct: 311 SDHCPVYATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD- 369
Query: 228 VQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGI 283
++ + + R ++ G + G P N G T D + + ++ C + +
Sbjct: 370 -RRRNIKDMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNV 427
Query: 284 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 343
V + + +E R + + T +N S D KAK S
Sbjct: 428 GAAVALAPPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN 478
Query: 344 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
GQ +L+ FF ++ V+ D S + + V + P+++ S++ PV
Sbjct: 479 -GQRTLQGFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVPSP 533
Query: 404 SCSVHELHGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 460
+ S + D E K W ++ L + +P C+ H
Sbjct: 534 KTPTEPIVAATKLFSPIKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-H 576
Query: 461 KEPCVARVVKKPGPT-------------------FGRRFFVCARAEGPASNPEAN----C 497
EPC++ V KKPG GR F++C R GP+ E + C
Sbjct: 577 DEPCISLVTKKPGVNCGGCLPRGGKADDSMIGNPAGRSFYICPRPLGPSGEKERDTEWRC 636
Query: 498 GYFKWA 503
G F W+
Sbjct: 637 GTFIWS 642
>gi|242215539|ref|XP_002473584.1| predicted protein [Postia placenta Mad-698-R]
gi|220727304|gb|EED81227.1| predicted protein [Postia placenta Mad-698-R]
Length = 475
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 118/333 (35%), Gaps = 79/333 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFR 88
+L F ++F + R L+ + R + VVGD+NIA +D + F + R
Sbjct: 147 RLPFKMNFHLLLQERIRKLIEKEHREVIVVGDINIAATPLDHAEGNLPSSIATFWDHPAR 206
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ- 147
WFR+ L + G DV R PER+ YTCW A + NYG RID++L L
Sbjct: 207 EWFRNWL-DPNGPMVDVIRMFWPERKGLYTCWNMKLQARETNYGARIDYVLVTKGLLPWI 265
Query: 148 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207
KH G + L+GSDH P+Y+ L +
Sbjct: 266 KH-----------------------------------GDIQASLKGSDHCPIYIDLHD-- 288
Query: 208 EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSC-----KFSGSLPAESNSTG 262
L + G L + + EV + + C +FSG S G
Sbjct: 289 -------------ELLLENGETIKLRDAMKQNEVTQPPRLCAKFWDEFSGKQTVLSTFFG 335
Query: 263 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 322
E+ + S +L SS K+I S+ + T Q
Sbjct: 336 KREEMPSQTPSA------SPVLVTTIPSS----------KSITRSFSSSRINDQRTSGQS 379
Query: 323 SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHK 355
+ S + K K GQ L SFF K
Sbjct: 380 AKRKPSDKGLSSGSNKKNKVDPGQAKLASFFSK 412
>gi|358369104|dbj|GAA85719.1| DNA lyase Apn2 [Aspergillus kawachii IFO 4308]
Length = 626
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 73/190 (38%), Gaps = 55/190 (28%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F +F M R L+ G+R+FV GDLNI+ ID AG +F
Sbjct: 169 FRRNFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHA 228
Query: 88 RIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L E G D+ RS HP+R+ YTCW A NYG+RID
Sbjct: 229 RRVFNQLLSDGKVIGEREEGREQPVLHDICRSFHPDRKGMYTCWEQRINARPGNYGSRID 288
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ D+Q F ++ E L GSDH
Sbjct: 289 YVLCS-------LDMQDW-FCDSNIQEG--------------------------LMGSDH 314
Query: 197 APVYMCLGEV 206
PVY E
Sbjct: 315 CPVYATFKET 324
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 497
+W ++ + PLC+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 555 DWSKL--FTKKRAPLCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRC 612
Query: 498 GYFKWA 503
F WA
Sbjct: 613 PTFIWA 618
>gi|358337780|dbj|GAA56104.1| AP endonuclease 2 [Clonorchis sinensis]
Length = 350
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 21/99 (21%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNE-----FRIWFRSMLVESG--------------G 100
+ + GDLN+ +D C+ PD E +R W S+L G
Sbjct: 11 VVISGDLNVYHTILDHCE--PDIVTLETHTTAYRQWLNSLLTPHSRDPQIPASDDYPLPG 68
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
+F D+FR HP R++ +TCW + TGA + NYG R+D+IL
Sbjct: 69 NFVDIFRHVHPTRKDGFTCWSARTGARETNYGVRLDYIL 107
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKP----GPTFGRRFFVCARAEGPASNPEANCG 498
W+R+ + + P C+GH EPCV R VK+ G GRRF+VCAR +G NP A C
Sbjct: 282 WQRLLSGPKKA-PRCRGHDEPCVLRSVKQASTNSGSRRGRRFWVCARPQGSKDNPVARCS 340
Query: 499 YFKW 502
F W
Sbjct: 341 TFIW 344
>gi|389745395|gb|EIM86576.1| DNase I-like protein [Stereum hirsutum FP-91666 SS1]
Length = 677
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 71/175 (40%), Gaps = 41/175 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 88
+L F L++ + R L+ + R + VVGD+N+ ID D K F R
Sbjct: 180 RLPFKLNYHRMLEERVRILVEREEREVIVVGDINVCAEPIDHGDGHLPSCKEGFWEPPCR 239
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
WF L + G DV R P+R+ YTCW G + NYG+RID+IL
Sbjct: 240 AWFYEWL-DPKGKMIDVVRRFWPDRKGMYTCWNQKIGGRESNYGSRIDYILVT------- 291
Query: 149 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
PG P + G + ++GSDH PVY+ L
Sbjct: 292 --------------------------PGLMPWIK-HGDIEPTIKGSDHCPVYVDL 319
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 502
P C H EP V KPGP G+ FF+C+R GP + + C +FKW
Sbjct: 598 PKCIVHGEPTKELRVNKPGPNKGKTFFICSRPVGPGYDKGRMERLRDEVDHQWRCNFFKW 657
Query: 503 A 503
+
Sbjct: 658 S 658
>gi|451997504|gb|EMD89969.1| hypothetical protein COCHEDRAFT_1178143 [Cochliobolus
heterostrophus C5]
Length = 632
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 106/503 (21%), Positives = 181/503 (35%), Gaps = 85/503 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F + F ++ R L G+++ + GDLN++ ID A ++
Sbjct: 170 FRIGFLIALETRIRNLTKMGKKVILTGDLNVSRDLIDTARAEEHIRTEGMTHDEYLNTPN 229
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L+ +D+ R HP+R +T W A N+G+RID
Sbjct: 230 RRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFGSRID 289
Query: 137 HILCAGPC--LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGS 194
ILC+ Q ++Q + H +L D P R G S +E
Sbjct: 290 FILCSITIKDWFQDANIQEGLMGSDHCPVYAVLKD-------KVPVLRTSG--SDSVEEE 340
Query: 195 DHA-----PVYMCLGEVPE---IPQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAK 243
H P M V + P P+L+ + L R ++ +
Sbjct: 341 VHILDLMNPAGMFKDGVRQRDYDPAKDIPALSGKLLSEFTKRRNIRDMFSKKPAPPKPNP 400
Query: 244 QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKT 303
+ + A++ E +DR L ++ + + + + K+
Sbjct: 401 KPTPAVARPDVTAKAEVASTASTVEEQMDRDLALAIEASKADMLANTENKLTNSQSPLKS 460
Query: 304 IENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 363
E R SA+ + I +G ++ K GQ SLK FF S +
Sbjct: 461 AEKRRASASASPGKPIKRGKPGALA---------VPTKGNKGQQSLKGFFQTHSKPAD-- 509
Query: 364 NNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD 423
S+ N++V S+S E ++ + TD + H +++ S D D
Sbjct: 510 -------SVEPNDAVP--SMSSFEATDTASQN----ATDMA---HPSSPSSTANKSFDSD 553
Query: 424 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 483
+ + + W ++ + + P C+ H E C+ R KKPG GR+F++C
Sbjct: 554 PRASQ--------ETSREGWTKL--FSKKAAPRCE-HGEHCITRTTKKPGVNCGRQFWIC 602
Query: 484 ARAEGPASNPEAN----CGYFKW 502
R GP+ + E CG F W
Sbjct: 603 PRPIGPSGHKEVGTQWRCGTFIW 625
>gi|451852174|gb|EMD65469.1| hypothetical protein COCSADRAFT_169947 [Cochliobolus sativus
ND90Pr]
Length = 632
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/530 (21%), Positives = 178/530 (33%), Gaps = 139/530 (26%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F + F ++ R L G+ + + GDLN++ ID A ++
Sbjct: 170 FRIGFLIALETRIRNLTKMGKNVVLTGDLNVSRDLIDTARADEHIRSEGMTHEEYLSTPN 229
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L+ +D+ R HP+R +T W A N+G+RID
Sbjct: 230 RRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFGSRID 289
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
ILC+ I K W + L GSDH
Sbjct: 290 FILCS--------------------------ITIKDW--------FQDANIQEGLMGSDH 315
Query: 197 APVYMCLGE-VPEI----------------------------------PQHSTPSLASRY 221
PVY L + VP + P P+L+ +
Sbjct: 316 CPVYAVLKDKVPVLRTSGPDSVEEEVHILDLMNPAGMFKDGVRQRDYDPAKDVPALSGKL 375
Query: 222 LPII---RGVQQTLV--SVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 276
LP R ++ S K + + A+ ST T + E +DR L
Sbjct: 376 LPEFTKRRNIRDMFSKKSTPPKPNPNPTPAVAQLDVTTKADVASTASTAE--EQMDRDLA 433
Query: 277 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 336
++ + + + K+ E R SA+ + I +G ++
Sbjct: 434 LAIEASKADMLADTENKTTFSQSPLKSAEKRRASASASPGKPIKRGKPGALA-------- 485
Query: 337 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 396
+ K GQ SLK FF S + D + D + +V++ T + SQ H S
Sbjct: 486 -VSTKGNKGQQSLKGFFQTHSKST--DPITPNDAAPSVSSLKTTDTPSQNATEMPHPPSP 542
Query: 397 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 456
P T N S S + ++ R W ++ + + P
Sbjct: 543 --PST-----------ANESFDSDPRASQEASR-----------EGWTKL--FSKKAAPR 576
Query: 457 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
C+ H E C+ KKPG GR+F+VC R GP+ + E CG F W
Sbjct: 577 CE-HGEHCITLTTKKPGVNCGRQFWVCPRPIGPSGHKEVGTQWRCGTFIW 625
>gi|326368806|gb|ADZ55472.1| DNA lyase [Sclerotinia homoeocarpa]
Length = 654
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 59/190 (31%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
EF L F +++ R L+ +G+R+F+ GDLNI ID +A K
Sbjct: 179 EFRLGFLNALDTRVRNLVAEGKRVFLAGDLNIIRDEIDTANAEEQLKKQGITVEQYVSTP 238
Query: 88 -RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F ++V GG +D+ R HPER+ +TCW + N+G+
Sbjct: 239 ARRLFNHLVV--GGRVVGERDEGRETEIMWDLCRGFHPERKGMFTCWDTKLNTRPGNFGS 296
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ K WK + + L G
Sbjct: 297 RIDYVLCS-----------------------------KEWK-----DWFQDANIQEGLMG 322
Query: 194 SDHAPVYMCL 203
SDH PVY L
Sbjct: 323 SDHCPVYATL 332
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 412 GVNSSVCSHDQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVA 466
G N++ S+D+ +F+ E+ +V A W ++ L + P C+ H +PC++
Sbjct: 549 GGNTTTSSNDEASAMNAKFVLDEQKDVIDPIVAKESWSKL--LKKRVAPKCE-HNDPCIS 605
Query: 467 RVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
V KK G GR F++CAR GP+ E N CG F W+
Sbjct: 606 HVTKKQGINCGRSFYMCARPLGPSGQQEKNTEWRCGTFIWS 646
>gi|342878043|gb|EGU79454.1| hypothetical protein FOXB_10039 [Fusarium oxysporum Fo5176]
Length = 593
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/512 (21%), Positives = 172/512 (33%), Gaps = 108/512 (21%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNE 86
+F F ++ R L+ G+++ + GDLN+ + +D + D+
Sbjct: 139 DFRTGFFQALEVRIRNLVAAGKQVILTGDLNVVRSELDSTNVSETLRKEGIDLSDWMNAP 198
Query: 87 FRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F ++ E +D+ R HPER TCW + N G+RI
Sbjct: 199 VRRIFNQLIFEGSVLGERDQGREKPVLWDLCRCFHPERVGMNTCWDTKRNTRPANNGSRI 258
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D +V C + +Y + G L GSD
Sbjct: 259 D-------------------YVLCS-DGIKSWFNYSNIQEG--------------LMGSD 284
Query: 196 HAPVYMCLGEVPEIPQHSTPSLASRYLP-IIRGVQQ----------TLVSVLMKREVAKQ 244
H PV+ L + + L P + G ++ L S L+ +Q
Sbjct: 285 HCPVFANLSDKVTVGDKECALLEMMNPPGMFNGDERLRDWSPKDHLPLSSKLIPEFDRRQ 344
Query: 245 GKSCKFS--GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTK 302
F+ + P E T + LNN S S +N S +
Sbjct: 345 SIRDMFTKKAAPPREPTRT-------DTPAEPLNNGNSS-----ASGSPTNASSTPRLGE 392
Query: 303 TIENCRDSANVASHSTITQGSSNHISPFHVDR----ARKKAKKSQLGQLSLKSFFHKRSN 358
T + + SA+ S + PF + A K GQ +L+ FF ++
Sbjct: 393 TTNSTKLSASQPSSKRPGTAADTTSRPFKKTKSFTGANDTKSKVAQGQRTLQGFFKPKAP 452
Query: 359 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP---VTDYSCSVHELHGVNS 415
+ D + + N S T + P S + P T+ S L G
Sbjct: 453 AAQDGKAELV--AANSTPSTTKKPAGSGKAPASAQRLSNTPQATPTEKSSPTVPLRG--- 507
Query: 416 SVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
+D R D A W ++ L + P C+ H EPC++ KKPG
Sbjct: 508 ------KDPDPSDRVFDPIE---AKESWSKL--LGKRVAPRCE-HDEPCISFTTKKPGVN 555
Query: 476 FGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++C R GP+ E N C F W+
Sbjct: 556 CGRMFYICPRPLGPSGEKERNSEWRCSTFIWS 587
>gi|134079677|emb|CAK97103.1| unnamed protein product [Aspergillus niger]
Length = 572
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 70/193 (36%), Gaps = 55/193 (28%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F SF M R L+ G+R+FV GDLNI+ ID AG +F
Sbjct: 158 FRRSFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHA 217
Query: 88 RIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R +L E G D+ RS HP R+ YTCW A NYG+RID
Sbjct: 218 RRVLNQLLSDGKVIGEREEGREQPVLHDICRSFHPGRKGMYTCWEQRINARPGNYGSRID 277
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D + W + L GSDH
Sbjct: 278 YVLCS--------------------------LDMQEWF--------CDSNIQEGLMGSDH 303
Query: 197 APVYMCLGEVPEI 209
PVY E I
Sbjct: 304 CPVYAMFKETVNI 316
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
PLC+GH+EPC++ KKPG GR F++C R GP+ N E +
Sbjct: 480 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKASAF 524
>gi|345565933|gb|EGX48880.1| hypothetical protein AOL_s00079g101 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 33/245 (13%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------GPDFAKNEFRI 89
+F +++ ++ R L G+R+ VGD+NIAP ID DA GPD +E
Sbjct: 136 DFRMAWLKALDERIRNLTKMGKRVVTVGDINIAPEPIDSADAWEMQKRLGPD--SSEMLE 193
Query: 90 W--------FRSMLVESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
W RS+ S + DV R P+R YT W + A NYG+RID+++
Sbjct: 194 WNETPAKKLLRSLCEPSEEAVMVDVVRQFFPDRVAMYTHWETKINARPGNYGSRIDYVVA 253
Query: 141 AGPC--LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAP 198
+ + D+Q+ + H C + K P G L+ + A
Sbjct: 254 SSSMKDWFESADIQNGLHGSDH---CPVYAVLK-------PEIELDGEKRVLLDLVNPAG 303
Query: 199 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAES 258
V++ E+P P +++R +P RG ++++ + ++ VAK S PAE
Sbjct: 304 VFVGGERKQELP--PPPKMSARLIPHFRG-RRSIKDMFQRKTVAKVVSIAGSSTQEPAEP 360
Query: 259 NSTGD 263
+ D
Sbjct: 361 SGEND 365
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA--------SNPE 494
W ++ + S PLC GH EP +KPG GR F++CAR GP+ SN E
Sbjct: 502 WNKL--FAKPSAPLCDGHSEPAKKMQTRKPGLNNGRWFWMCARPVGPSGPKERSRRSNDE 559
Query: 495 ANCGYFKW 502
C YFKW
Sbjct: 560 WRCDYFKW 567
>gi|350631687|gb|EHA20058.1| Hypothetical protein ASPNIDRAFT_48146 [Aspergillus niger ATCC 1015]
Length = 575
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 87
F SF M R L+ G+R+FV GDLNI+ ID AG +F
Sbjct: 118 FRRSFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHA 177
Query: 88 RIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R +L E G D+ RS HP R+ YTCW A NYG+RID
Sbjct: 178 RRVLNQLLSDGKVIGEREEGREQPVLHDICRSFHPGRKGMYTCWEQRINARPGNYGSRID 237
Query: 137 HILCA 141
++LC+
Sbjct: 238 YVLCS 242
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 515 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 567
>gi|392578943|gb|EIW72070.1| hypothetical protein TREMEDRAFT_41480 [Tremella mesenterica DSM
1558]
Length = 668
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 38/200 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRIWFRSMLV 96
+ ++F ++ R L GR + + GD+NI A ID + G A+ ++ R +L
Sbjct: 175 YKMNFFHALQARVRALQAAGREVIIAGDINIMRAPIDSGEGGIRTSAEQHYQHPARVILN 234
Query: 97 E---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQS 153
+ G DV R P+R + +TCW A NYG+RID ILC
Sbjct: 235 DWCAPKGPMIDVVRESWPDRDDMFTCWNQKLDARPSNYGSRIDLILCT------------ 282
Query: 154 HNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 213
PG P + G + ++ GSDH PVY+ L E +P
Sbjct: 283 ---------------------PGLRPWIK-GGDIVPKVYGSDHCPVYIDLHESISLPSGQ 320
Query: 214 TPSLASRYLPIIRGVQQTLV 233
+L P+ R T +
Sbjct: 321 ILTLHDALNPLDRPPTTTTI 340
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCA----------RAEGPAS--NPEANCGYFKW 502
PLC H++PC +VK PGP G+RF++C+ R++ P N + C YF W
Sbjct: 595 PLCTVHQQPCKDFIVKIPGPNKGKRFWLCSLPVGAGYDTGRSKRPREDVNRDFRCDYFLW 654
Query: 503 AFSKSKQK 510
S ++QK
Sbjct: 655 D-SANRQK 661
>gi|212544628|ref|XP_002152468.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
gi|210065437|gb|EEA19531.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
Length = 607
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID--------RCDAGPD--FAKNEF 87
F F + + R L+ G+R+ V GDLNI+ ID R G + F
Sbjct: 158 FRQGFITLLDARIRNLVAMGKRVIVTGDLNISAGEIDSAHLTEAIRKGTGSEDEFVSGPV 217
Query: 88 RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F + LVE D+ RS HP+RR YTCW + A NYG RI
Sbjct: 218 RRVF-NQLVEGAKVIGKRDSGREVPVLHDICRSFHPDRRGMYTCWETRVNARPGNYGARI 276
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW-KGGMSTRLEGS 194
D+IL + +D K W W +G + L GS
Sbjct: 277 DYILSS--------------------------LDIKDW---------WSEGNIQEGLMGS 301
Query: 195 DHAPVYMCLGE 205
DH PVY E
Sbjct: 302 DHCPVYAVFKE 312
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W ++ + ++P C+ H+EPC+ KK G GR F++C+R GP E C
Sbjct: 538 WSKL--FTKKAMPRCEDHQEPCIMLTTKKAGINCGRSFWMCSRPLGPTGQSEKGTQWRCK 595
Query: 499 YFKWA 503
F WA
Sbjct: 596 TFIWA 600
>gi|449019372|dbj|BAM82774.1| similar to dna-(apurinic or apyrimidinic site) lyase
[Cyanidioschyzon merolae strain 10D]
Length = 952
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 82 FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC- 140
F + R+W ML S F D+FR K P RR+AY+CW + T A NYGTRID+IL
Sbjct: 371 FETHPSRVWLHRML--SDDLFRDLFREKWPNRRDAYSCWNTQTQARLTNYGTRIDYILLS 428
Query: 141 --AGPCLH-QKHDLQSHNFVTCH---VNECDILIDYKRW 173
AGP L DL + + H V E +ID ++W
Sbjct: 429 CNAGPYLRCTACDLLPNVMGSDHCPCVAELAPVIDTEKW 467
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
P C GH+EP V R VK+ GP GR+F+VC R GP C +F+W
Sbjct: 875 PRCHGHQEPAVLRTVKQ-GPHRGRQFYVCRRPAGPIER-GGRCNFFQW 920
>gi|385145223|emb|CCD57806.1| putative DNA lyase apn2 protein [Neurospora terricola]
Length = 589
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 112/519 (21%), Positives = 182/519 (35%), Gaps = 115/519 (22%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 120 FVLIGVYSPATRDE----TRTEFRQAFIDAMDARVRNLVAMGKEVFLCGDLNIIRNEMDT 175
Query: 76 CDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFFDVFRSKHPE 112
AG P+ K E F + +V G +D+ R HP
Sbjct: 176 --AGLPERLKKEAMTLDDFISTPSRRFLNQVVFGGRVLGEPDEGREKPVLWDLCREFHPR 233
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R YTCW + A N+G+RID++LC FV ++ E
Sbjct: 234 RPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQEG-------- 277
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 232
L GSDH PVY +G+ T S +PI +
Sbjct: 278 ------------------LLGSDHCPVYATIGD--------TVSKDGTTIPITDIMNPEG 311
Query: 233 VSVLMKREVAKQGKSC------------------------KFSGSLPAESNSTGDTEDCS 268
+ +R+ K C K + P ++ D +D S
Sbjct: 312 MFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSTTPKSASPAADGQDTS 371
Query: 269 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 328
+ + S LQ S+ + + + E + Q +S+
Sbjct: 372 DPTNTSYTTAHAIAALQEAASSAPSPKQPLSQSTPTEPALSQTSPLPKRRAEQPASSIRP 431
Query: 329 PFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNVNNSVTDT 381
P V A K S++G Q +L FF ++ V+ D+ + S + ++ +T
Sbjct: 432 PKKVKAAFTKQPSSKIGPGPSQSTLMGFFKPKTPTPTVNPDERPGPLNGSNHYTAAIAET 491
Query: 382 SLSQEEV------PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD-QDEKKGKRFLDKE 434
+ E P+ ++ I D + V S ++E KGK D
Sbjct: 492 TTRNEPSPAKGSQPKRSFEADDIEEWDEDAVESKTSPVTYKATSAAMEEEGKGKTIFDPI 551
Query: 435 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 473
+N + W ++ L + +P C+ H + C + V KKPG
Sbjct: 552 QNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPG 584
>gi|302843683|ref|XP_002953383.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
gi|300261480|gb|EFJ45693.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
Length = 705
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 439 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 498
A L WR+IQ M+ P C GHKEPC R VKK G GR+F+ CAR +G P C
Sbjct: 616 AALAWRQIQDQMKP--PRCSGHKEPCAVRTVKKRGDNNGRQFWCCARPDG--LPPNGRCD 671
Query: 499 YFKWA 503
+F+WA
Sbjct: 672 FFQWA 676
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR+ HP+R+ AYTCW +++GA NYG+RIDH+L A
Sbjct: 301 FVDAFRAFHPKRQHAYTCWNTSSGARVNNYGSRIDHVLVA 340
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-DF-AKNEFRIWFR 92
++ + L F ++ R + L +GRR+ +VGDLNIAP +D C A P DF A R W R
Sbjct: 153 RMSYKLQFYRALQLRLDGFLAEGRRVLLVGDLNIAPDYMDVCGATPRDFNACRADRAWLR 212
Query: 93 SML 95
+L
Sbjct: 213 GLL 215
>gi|58271540|ref|XP_572926.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134115276|ref|XP_773936.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256564|gb|EAL19289.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229185|gb|AAW45619.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 654
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 44/184 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML 95
+ +++ ++ R + L GR + +VGD+NI +D + GP A+ + R +L
Sbjct: 181 YKMNYLHALQERVQLLQAAGREVMLVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRIL 239
Query: 96 VE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ G DV R P+R + +TCW A NYG+RID++LC
Sbjct: 240 DDWCAPKGPMIDVVRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT----------- 288
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRW-KGG-MSTRLEGSDHAPVYMCLGEVPEIP 210
PG P W KGG + ++ GSDH PVY+ L E P
Sbjct: 289 ----------------------PGLRP---WIKGGDILPKVYGSDHCPVYVDLHESIVTP 323
Query: 211 QHST 214
+ T
Sbjct: 324 EGET 327
>gi|156056543|ref|XP_001594195.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980]
gi|154701788|gb|EDO01527.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF---- 87
EF L+F +++ R L+ G+ + +VGDLN+ ID + K NE+
Sbjct: 142 EFRLAFLNALDTRIRNLVALGKSVLLVGDLNVIGDEIDTANLEEQLKKQKLTLNEYISTP 201
Query: 88 -RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F +L+ GG +DV R HP R++ +TCW A N+G+
Sbjct: 202 ARRLFNHLLI--GGKVVGERDEGREPQVMWDVCRGFHPARKKMFTCWEQKKNARPGNFGS 259
Query: 134 RIDHILCA 141
RID+ILC+
Sbjct: 260 RIDYILCS 267
>gi|226294616|gb|EEH50036.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb18]
Length = 621
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F +F +++ R L+ G+R+ + GDLNI+ + ID A +F
Sbjct: 169 FRKAFVNAVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPV 228
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ SGG D+ R HP+RR YTCW A NYG+R
Sbjct: 229 RRIFNQLV--SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSR 286
Query: 135 IDHILCA 141
ID++LC+
Sbjct: 287 IDYVLCS 293
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV-TDY 403
GQ SLK FF + + S D+ + S V++ V V + K P+ Y
Sbjct: 456 GQKSLKGFFGLKGSGSTADDQT---NSPKVSDPVA--------VGNEQQEAAKSPLDITY 504
Query: 404 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL--------EWRRIQQLMETSIP 455
SC + G Q E + N+ ++ W RI + P
Sbjct: 505 SCPPGDGCGPEDDETQGQQQEAAEPLANGGDSNDDCIVHDPIANKESWSRI--FTKKPAP 562
Query: 456 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 503
C GH EPC++ V KK G GR F++CAR GP+ + + C F W+
Sbjct: 563 RCSGHHEPCISLVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 614
>gi|402536547|gb|AFQ62784.1| APN2, partial [Hymenoscyphus albidus]
gi|402536555|gb|AFQ62789.1| APN2, partial [Hymenoscyphus albidus]
Length = 488
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 59/196 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 86
EF + F ++ R L+ G+R+F+ GDLNI +D G ++
Sbjct: 42 EFRIGFLDALDARVRNLVAMGKRVFLTGDLNIIREKMDTAYGDEQLKKHGMTGEEYLSTP 101
Query: 87 FRIWFRSMLV-----------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
+LV E +D+ R+ HP R +TCW + A N+G+RI
Sbjct: 102 AMRMLNQLLVGGRVIGQKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRI 161
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW--KGGMSTRLEG 193
D++LC+ C Y W + + L G
Sbjct: 162 DYVLCSLDC------------------------------------YNWFRESNIQEGLMG 185
Query: 194 SDHAPVYMCLGEVPEI 209
SDH PVY L E EI
Sbjct: 186 SDHCPVYAILKEKVEI 201
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 419 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 475
Query: 499 YFKWA 503
F W+
Sbjct: 476 TFIWS 480
>gi|169595280|ref|XP_001791064.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
gi|111070752|gb|EAT91872.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
Length = 635
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 49/173 (28%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ SLK FF R+N S D+ QEE P +P TD +
Sbjct: 493 GQQSLKGFFQSRTNAS-------------------DSKPGQEETP-------LVPFTDAA 526
Query: 405 CSVHE----------LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
E G +SS +H Q + + KE W ++ +
Sbjct: 527 VETAENRTSLSQTSNTKGPSSSPPAHVQTDPLASQEASKE-------GWTKL--FSKKPS 577
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
P C+GH EPC+ KKPG GR+F++C+R GP+ E C F WA
Sbjct: 578 PRCEGHAEPCIMLTTKKPGVNCGRQFWMCSRPIGPSGQKETGTQWRCATFIWA 630
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNE 86
+F F +++ R L G+ + + GDLN++ ID A ++
Sbjct: 167 DFRYGFLTALDTRIRNLNNMGKNVILTGDLNVSRDLIDTARAEDSMRSEGMTHTEYLSTP 226
Query: 87 FRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F +L+ +D+ R HP+R YT W A N+G+RI
Sbjct: 227 NRRVFNQLLMNGQVPGERDEGREAPVLYDLCREFHPDREGMYTHWEQKINARPGNFGSRI 286
Query: 136 DHILCA 141
D +LC+
Sbjct: 287 DFVLCS 292
>gi|321262100|ref|XP_003195769.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317462243|gb|ADV23982.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 651
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 40/173 (23%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML 95
+ +++ ++ R L GR + +VGD+NI +D + GP A+ + R +L
Sbjct: 153 YKMNYLHALQERVHLLQAAGREVIIVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRIL 211
Query: 96 ---VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
G DV R P+R + +TCW A NYG+RID++LC H L+
Sbjct: 212 DNWCAPKGPMVDVIRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT-------HGLR 264
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
W G G + +++ GSDH PVY+ L E
Sbjct: 265 P-------------------WIKG--------GDILSKVYGSDHCPVYVDLHE 290
>gi|384253850|gb|EIE27324.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 211
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R WFR L + GG D+FR HP ++AYT W T A + N+G+R+D +L P
Sbjct: 79 RAWFRRWLHQEGGPLVDLFRKMHPSEQKAYTVWNMATLARKRNHGSRVDFLLAGRPDPAM 138
Query: 148 K-HDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
K H D+ D + W + EGSDHAPV+ L
Sbjct: 139 KDHTAAPEEKELAGEPFEDLFTDVRIW---------------STFEGSDHAPVWADL 180
>gi|402695438|gb|AFQ90567.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695442|gb|AFQ90570.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 456
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 71/196 (36%), Gaps = 59/196 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 86
EF + F +++ R L+ G+R+F+ GDLNI +D G ++
Sbjct: 94 EFRIGFLNALDARVRNLVAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTP 153
Query: 87 FRIWFRSMLV-----------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
+LV E +D+ R+ HP R +TCW + A N+G+RI
Sbjct: 154 AMRMLNQLLVGGRVIGQKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRI 213
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW--KGGMSTRLEG 193
D++LC+ C Y W + L G
Sbjct: 214 DYVLCSLDC------------------------------------YNWFRDSNIQEGLMG 237
Query: 194 SDHAPVYMCLGEVPEI 209
SDH PVY E EI
Sbjct: 238 SDHCPVYAVFKEKVEI 253
>gi|402695428|gb|AFQ90560.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695431|gb|AFQ90562.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 511
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 71/196 (36%), Gaps = 59/196 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 86
EF + F +++ R L+ G+R+F+ GDLNI +D G ++
Sbjct: 65 EFRIGFLNALDARVRNLVAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTP 124
Query: 87 FRIWFRSMLV-----------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
+LV E +D+ R+ HP R +TCW + A N+G+RI
Sbjct: 125 AMRMLNQLLVGGRVIGQKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRI 184
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW--KGGMSTRLEG 193
D++LC+ C Y W + L G
Sbjct: 185 DYVLCSLDC------------------------------------YNWFRDSNIQEGLMG 208
Query: 194 SDHAPVYMCLGEVPEI 209
SDH PVY E EI
Sbjct: 209 SDHCPVYAVFKEKVEI 224
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 442 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 498
Query: 499 YFKWA 503
F W+
Sbjct: 499 TFIWS 503
>gi|405122231|gb|AFR96998.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. grubii H99]
Length = 671
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 44/175 (25%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML 95
+ +++ ++ R L GR + +VGD+NI +D + GP A+ + R +L
Sbjct: 153 YKMNYLHALQERVHLLQAAGREVILVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRIL 211
Query: 96 VE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ G DV R P+R + +TCW A NYG+RID++LC
Sbjct: 212 DDWCAPKGPMIDVVRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT----------- 260
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRW-KGG-MSTRLEGSDHAPVYMCLGE 205
PG P W KGG + ++ GSDH PVY+ L E
Sbjct: 261 ----------------------PGLRP---WIKGGDILPKVYGSDHCPVYVDLHE 290
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 434 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
E+N A +W + + PLC H +PC +V KPGP G+RF++C+
Sbjct: 593 EKNAKAAPQWSSL--FAKKLPPLCTVHHKPCKDFIVMKPGPNKGKRFWLCS 641
>gi|347840170|emb|CCD54742.1| similar to DNA lyase [Botryotinia fuckeliana]
Length = 651
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
EF + F +++ R L+ G+ +F+ GDLNI ID +A K
Sbjct: 178 EFRIGFLNALDTRVRNLVALGKSVFLTGDLNIIREEIDTANAEEKLKKEGLTVEQYISTP 237
Query: 88 -RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F +LV GG +D+ R HP R+ +TCW A N+G+
Sbjct: 238 ARRLFNHLLV--GGKVIGDRDEGKEPQVMWDICRGFHPTRKGMFTCWDQKMNARPGNFGS 295
Query: 134 RIDHILCA 141
RID++LC+
Sbjct: 296 RIDYVLCS 303
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 424 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 481
EK K DKE ++ VA W +L+ IP HKEPC++ + KK G GR F+
Sbjct: 561 EKTCKSRQDKEVHDPIVAKESW---SKLLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 617
Query: 482 VCARAEGPASNPEAN----CGYFKWA 503
+C R GP+ E N C F W+
Sbjct: 618 MCPRPLGPSGQQEKNTEWRCNTFIWS 643
>gi|19112314|ref|NP_595522.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe 972h-]
gi|48427993|sp|P87175.1|APN2_SCHPO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|2117306|emb|CAB09119.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe]
gi|40287246|gb|AAR83752.1| AP-endonuclease-like protein [Schizosaccharomyces pombe]
Length = 523
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 42/179 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EF 87
+LE+ +F ++ R E L+ +G R+I +VGD+NI ID D ++ E
Sbjct: 160 RLEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMES 219
Query: 88 RIWFRSMLVESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R W R +L+ S D+ R +HP R+ +TCW + NYGTRID+ L L
Sbjct: 220 RQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLP 279
Query: 147 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
V + DI+ + + GSDH PVY+ L E
Sbjct: 280 -------------WVQDADIMAE---------------------VMGSDHCPVYLDLKE 304
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 488
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>gi|430813001|emb|CCJ29604.1| unnamed protein product [Pneumocystis jirovecii]
Length = 545
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------EFR 88
+F ++ ++ +R L GR I ++GD+N + AID A +F +N + R
Sbjct: 161 KFRRAWMETLDHRIRNLKKMGRNIIIMGDINASRDAIDTSYALEEFQENNTNGLEDLDQR 220
Query: 89 IWFRSMLV-ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
W +L+ G D+ R HP R+ +TCW + A N+GTRID+IL
Sbjct: 221 AWLNKILLPHPEGFMIDLCRHFHPNRKGMFTCWNAKINARPCNFGTRIDYIL 272
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
S PLC H++PC+ KKPG F R F++C++
Sbjct: 455 SPPLCNVHQKPCIELQSKKPGINFKRYFWICSK 487
>gi|307109978|gb|EFN58215.1| hypothetical protein CHLNCDRAFT_142087 [Chlorella variabilis]
Length = 483
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-RCDAGPDFAKNE-FRIW 90
R +L + L F +++ + E L GR + +VGD N+ A D D P + +E +
Sbjct: 131 RPRLHYKLRFLAALRRKCEELAVAGRELLLVGDFNVPAEARDVHPDLLPGGSLDELYGQE 190
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
R+ L ++ DV+R HP+ Y+ W T A FN G RID++LC
Sbjct: 191 ERAALHALTAAYPDVWRRLHPQEAATYSVWNEKTSARAFNRGLRIDYVLC 240
>gi|317151124|ref|XP_001824462.2| DNA lyase [Aspergillus oryzae RIB40]
Length = 556
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLN 373
T+ + S P V R++ +++ Q +LK FF + VS + I++T
Sbjct: 364 TVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-T 418
Query: 374 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 433
+ V S +P S S D + +H V ++ S+ F+ +
Sbjct: 419 PDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQ 474
Query: 434 ERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 488
V + +W ++ + +P+C+GH+EPC++ KKPG GR F++C R G
Sbjct: 475 NSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLG 532
Query: 489 PASNPEAN----CGYFKWA 503
P+ N E C F WA
Sbjct: 533 PSGNKEKGTQWRCATFIWA 551
>gi|302837660|ref|XP_002950389.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
Length = 1732
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIW 90
R +L + L+F ++ + + L GR++ +VGDLNIA +R D P DF ++
Sbjct: 150 RARLPYKLAFLRALRTKMDELTALGRQVVLVGDLNIAA---ERRDVHPTLDFDS----MY 202
Query: 91 FRSMLVESGG---SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ L E G ++ DV+R HP+ +YT W T A FN G RID++L +
Sbjct: 203 DKQELAELSGLIAAYPDVWRHLHPDTEGSYTVWDERTSARAFNTGLRIDYVLVS 256
>gi|302505072|ref|XP_003014757.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
gi|291178063|gb|EFE33854.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
Length = 601
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F L F + + R L+ G+R+ + GDLN ID A K E+
Sbjct: 133 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYP 192
Query: 88 --RIWFRSMLVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
RI+ R LV GS D+ R HP R YTCW A NYG+
Sbjct: 193 ARRIFNR--LVRPVGSTGDTHDTETLPVLRDLCREFHPSRTGMYTCWNQKVNARPGNYGS 250
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYR-WKGGMSTRLE 192
RID+ILC+ +++S FV ++ E I+ YR +K + + +
Sbjct: 251 RIDYILCS-------DNIRSW-FVESNIQEGLIVCVKLELI------YRSFKNLLISNEQ 296
Query: 193 GSDHAPVYMCLGE 205
GSDH PVY + +
Sbjct: 297 GSDHCPVYASISD 309
>gi|124441686|gb|ABN11482.1| DNA lyase [Ascosphaera apis]
Length = 533
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEF---- 87
+F L F R L+ G+RI V GDLNI+ D A G ++ ++
Sbjct: 118 DFRLGFLRVFECRVRNLIALGKRIIVAGDLNISRDVQDSASALADVLGERLSREQYISTP 177
Query: 88 -RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ +S +D+ R HP R+ +TCW T A N+G+R
Sbjct: 178 SRALFNELVTDSSDYDSSEPNNNAQCVLWDICRDFHPSRKGMFTCWDMKTNARPGNFGSR 237
Query: 135 IDHILCA 141
ID+ILC+
Sbjct: 238 IDYILCS 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 427 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 486
G+++ +++ + W I P C+GH EPC++ V KK G GR F++C R
Sbjct: 441 GEKYDRYSKDDDTIKAWANI--FTPQQAPSCEGHGEPCISLVTKKAGLNQGRSFWMCPRP 498
Query: 487 EGPASNPEAN----CGYFKW 502
GP+ + E C F W
Sbjct: 499 LGPSGSAEKGTQWRCATFIW 518
>gi|303288135|ref|XP_003063356.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455188|gb|EEH52492.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 573
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFK 501
W+RI M + P C+GH E C R VKK FGR FF C R G N +A+CG+F+
Sbjct: 511 WKRIHDRM--APPKCRGHGETCKVRSVKKKESANFGRTFFCCPRPAGARGNKDADCGFFQ 568
Query: 502 WAFSK 506
WA +
Sbjct: 569 WAAGR 573
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 36/165 (21%)
Query: 6 LIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGD 65
L+ G +L + + + +G E + + F F ++ R + L+ GRR+ GD
Sbjct: 165 LVDFGGFVLVNVYVPATTGGSGSEDVDIARDAFKRDFLLAVETRVDALVDAGRRVVACGD 224
Query: 66 LNIAPAAID----RCDAGPDFAK---------NEF------RIWFRSMLVESGGS----- 101
N+A +D R G +K EF R W L G
Sbjct: 225 WNVARGTMDAAAARTSTGTTGSKLGSSSAAREREFVRACPHRAWLDRQLQRDDGGGDDDD 284
Query: 102 ----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
D R +P+ +A+TCW +GA+ NYG RID
Sbjct: 285 ADGGGRRRPRLIDARR--YPKTSDAFTCWHVASGAQLTNYGARID 327
>gi|452836974|gb|EME38917.1| hypothetical protein DOTSEDRAFT_180911 [Dothistroma septosporum
NZE10]
Length = 661
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF---- 87
+F F +++ R L+ +G+ + +VGDLN++ ID D K E+
Sbjct: 165 DFRFGFINALDCRIRNLVKEGKNVVLVGDLNVSRHEIDSAPTLEDIRKGLGTREEYLMSP 224
Query: 88 -RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F MLV+ G +D R HP+R+ YTCW + T A NYG RI
Sbjct: 225 NRRIFNQMLVDGEVLDERDVGREKGVLWDTSRLFHPDRKGMYTCWETKTNARPGNYGARI 284
Query: 136 DHILCA 141
D +L +
Sbjct: 285 DFVLVS 290
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
PLC+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 574 PLCEGHSEPCKSMQTKKKGSNQGRSFWMCARPLGPSGEKEKGTQWRCGTFIW 625
>gi|346977469|gb|EGY20921.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium dahliae
VdLs.17]
Length = 550
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 55/194 (28%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
EF L + S++ R L+ G+++ + GDLN++ + ID + K +
Sbjct: 166 EFRLGYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIP 225
Query: 88 -RIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F +L E +D+ R HP+R+ +TCW + N G RI
Sbjct: 226 SRRLFNQLLFEGQVQGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARI 285
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC+ F+ ++ E L GSD
Sbjct: 286 DYLLCSAGI--------KDWFIDSNIQEG--------------------------LHGSD 311
Query: 196 HAPVYMCLGEVPEI 209
H PVY LG+ ++
Sbjct: 312 HCPVYGTLGDTVKV 325
>gi|409081894|gb|EKM82253.1| hypothetical protein AGABI1DRAFT_70906 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 641
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 58/172 (33%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCDAGPDFAK---------------------NEFRIWFRSM 94
+ R++ V+GD+N A ID C+ ++ E R W
Sbjct: 204 ENRQVIVLGDINACAAVIDHCEGDIMVSRARKANNLEKGDESGFWDCEGTGEGRRWLSDW 263
Query: 95 LVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
L +GG D+ R PER+ YTCW + A + NYGTRID+IL
Sbjct: 264 LQRHDGAGGPMVDIVRRFWPERKGMYTCWNTKLSARETNYGTRIDYILVT---------- 313
Query: 152 QSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
PG P + + ++GSDH PVY+ L
Sbjct: 314 -----------------------PGLIP-WIEAANIQPEIKGSDHCPVYIDL 341
>gi|426197032|gb|EKV46960.1| hypothetical protein AGABI2DRAFT_179106 [Agaricus bisporus var.
bisporus H97]
Length = 776
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 58/172 (33%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCDAGPDFAK---------------------NEFRIWFRSM 94
+ R++ V+GD+N A ID C+ ++ E R W
Sbjct: 234 ENRQVIVLGDINACAAVIDHCEGDIMVSRARKANNLEKGDESGFWDCEGTGEGRRWLSDW 293
Query: 95 LVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
L +GG D+ R PER+ YTCW + A + NYGTRID+IL
Sbjct: 294 LQRHDGTGGPMVDIVRRFWPERKGMYTCWNTKLSARETNYGTRIDYILVT---------- 343
Query: 152 QSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
PG P + ++GSDH PVY+ L
Sbjct: 344 -----------------------PGLIPWIE-AANIQPEIKGSDHCPVYIDL 371
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 502
P C H EP V K G G++F++CAR GP +P+ C +FKW
Sbjct: 696 PKCVAHGEPAKEYTVNKQGANKGKKFWICARPVGPGYDKGRTERLREEVDPQYRCNFFKW 755
Query: 503 AFSKSKQ 509
+ KQ
Sbjct: 756 STDWWKQ 762
>gi|46129427|ref|XP_389065.1| hypothetical protein FG08889.1 [Gibberella zeae PH-1]
Length = 609
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 94/479 (19%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W---- 90
+F L F ++ R L+ G+++ + GDLNI + +D + K F + W
Sbjct: 168 DFRLGFLQALDVRIRNLVAAGKQVVLTGDLNIVRSEVDSTNVSETLRKGNFDLNEWMNIP 227
Query: 91 ----FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F ++ E +D+ R HPER TCW + N G+RI
Sbjct: 228 ARRIFNQLIFEGSVLGERDQGRKAPVLWDLCRCFHPERAGMNTCWDTKRNTRPANNGSRI 287
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC+ D F ++ E L GSD
Sbjct: 288 DYVLCS--------DGIKSWFNFSNIQEG--------------------------LMGSD 313
Query: 196 HAPVY-------MCLGEVPEIPQHSTPSL------------ASRYLPIIRGVQQTLVSVL 236
H PV+ + GE +P+ P A LP+ + +
Sbjct: 314 HCPVFAIFSDKVIVRGEERALPEMMNPPGMFHGERRLRDWNAKDLLPL---SAKLIPEFD 370
Query: 237 MKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCD-SGILQGVYCSSSNQE 295
+R + S + P E + G S N D + + SG G S+ +
Sbjct: 371 RRRSIRDMFTKKAASAAPPQEPANPGAATKSSMNGDSNSEGIKEKSGGASGPETSAISIP 430
Query: 296 SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK-KSQLGQLSLKSFFH 354
GE + + N ++T +S + K K K GQ +L+ FF
Sbjct: 431 KLGETLGSTKQSVSPLNAKRPGSVTDTTSRPLKKTKSLVGAKDLKSKVAPGQRTLQGFFK 490
Query: 355 KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN 414
++ + D S V S T + + V S + P T + + E +
Sbjct: 491 PKAPAAQDGK------SERVAASSTPSPTKKPTVATRGAASPQQPNTPEAM-LTERSPLR 543
Query: 415 SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 473
S ++ D G+ F E A W ++ L + P C+ H EPC++ KKPG
Sbjct: 544 ISQRRNEPDS-SGRVFDPIE----AKESWSKL--LGKRVAPRCE-HDEPCISLTTKKPG 594
>gi|302419937|ref|XP_003007799.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
gi|261353450|gb|EEY15878.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
Length = 334
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 55/200 (27%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
EF L + S++ R L+ G+++ + GDLN++ + ID + K +
Sbjct: 167 EFRLGYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIP 226
Query: 88 -RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R F +L E +D+ R HP+R+ +TCW + N G RI
Sbjct: 227 SRRLFNQLLFEGQVRGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARI 286
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC+ F+ ++ E L GSD
Sbjct: 287 DYLLCSAGI--------KDWFIDSNIQEG--------------------------LHGSD 312
Query: 196 HAPVYMCLGEVPEIPQHSTP 215
H PVY LG+ ++ P
Sbjct: 313 HCPVYGTLGDTVKVDGQGCP 332
>gi|385145207|emb|CCD57793.1| putative DNA lyase apn2 protein [Neurospora pannonica]
Length = 643
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 121/580 (20%), Positives = 199/580 (34%), Gaps = 166/580 (28%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + EF +F +M R L+ G+ +F+ GDLNI +D
Sbjct: 120 FVLIGVYSPATRDE----TRTEFRQAFIDAMDARVRNLVAMGKEVFLCGDLNIIRNEMDT 175
Query: 76 CDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFFDVFRSKHPE 112
AG P+ K E F + +V G +D+ R HP
Sbjct: 176 --AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGRENPVLWDLCREFHPR 233
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
R YTCW + A N+G+RID++LC FV ++ E
Sbjct: 234 RPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQEG-------- 277
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE--------VP----------------- 207
L GSDH PVY +G+ +P
Sbjct: 278 ------------------LLGSDHCPVYATIGDSVNKDGATIPITDIMNPEGMFKDGQRQ 319
Query: 208 -EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 266
E Q +++ +P +Q++ + KR K + ++ + D +D
Sbjct: 320 REWSQKDCLPTSAKLIPEF-DRRQSIKDMFFKR---------KTTSTITKSAAPAADGQD 369
Query: 267 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 326
S+ + S + LQ S+ + + S ST T+ + +
Sbjct: 370 TSDPTNISSATVNATAALQEAASSAPSPKQS----------------LSQSTTTEPALSQ 413
Query: 327 ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 386
SP RA + A + + +K+ K+ + S + +L+ E
Sbjct: 414 TSPVPKRRAEQPASSIRPSK-KVKAALTKQPSSKTGPGPSQSTLMGFFKPKTPTPTLNPE 472
Query: 387 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRR 445
E P S + +N P T + S Q ++ + +E ++ A E W +
Sbjct: 473 ERPASTNGNNHSPAT----IAETITRAEPSPAKGSQPKRPFQTDDIEEWDDDANKESWSK 528
Query: 446 IQQLMETSIPLCKGHKEPCVARVVKKPG--------------------PT---------- 475
+ L + +P C+ H E C + V KKPG P+
Sbjct: 529 L--LGKRVVPKCE-HGEDCQSLVTKKPGINCGMLLLLFFSFLLSDALRPSPPSTTPDDLK 585
Query: 476 --------FGRRFFVCARAEGPASNPEAN----CGYFKWA 503
GR F++CAR GP+ + E C F W+
Sbjct: 586 LTLDSRLVTGRSFYMCARPLGPSGDKETGTEFRCKTFIWS 625
>gi|255089617|ref|XP_002506730.1| predicted protein [Micromonas sp. RCC299]
gi|226522003|gb|ACO67988.1| predicted protein [Micromonas sp. RCC299]
Length = 310
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
WR++Q+ E + P C GH E C RVVKK GP FGR FF C R + + +C +F+W
Sbjct: 189 WRKVQR--EITPPKCTGHDEVCKVRVVKKSGPNFGRLFFTCPRTK------DDSCDFFQW 240
>gi|373486776|ref|ZP_09577448.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
gi|372011200|gb|EHP11799.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
Length = 258
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 14 LQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAI 73
L ++ F + +GL ++L + F+ + R +L QGR++ V GD+N+AP I
Sbjct: 106 LTLLAGYFPNASSGL-----VRLPYKRQFALDLAERVRQVLAQGRQLIVTGDMNVAPEEI 160
Query: 74 DRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 128
D P F E R FR L DV R ++P YT W GA
Sbjct: 161 DLARPKDNRMSPGFTDEE-REDFRGYLAS---GLRDVLREQNPGTPGLYTWWSQRGGARA 216
Query: 129 FNYGTRIDHILCAGPCLHQKHDLQSH 154
N G RID L + + + D + H
Sbjct: 217 KNVGWRIDLFLVSEGLMGRVKDTRIH 242
>gi|402222945|gb|EJU03010.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 54/227 (23%)
Query: 32 VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFR--- 88
V+ + + +F + R L + + +VGDLN+ + +D + P+ K +
Sbjct: 165 VKDRFSYKFNFHRLLQERVRLLQEENCEVIIVGDLNMCASRMDDGEPVPESKKRNWNEEP 224
Query: 89 -IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
W + V+ G DV R HP+R + YT W S N+G R+D+ILC L
Sbjct: 225 WDWLKKW-VQPNGRLVDVTRRFHPDRTKMYTFWESKKDGRTANFGLRLDYILCTEGLLP- 282
Query: 148 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM------ 201
+ DIL ++ GSDH PVY+
Sbjct: 283 ------------WLKGSDIL---------------------PQVLGSDHCPVYVDLHDEI 309
Query: 202 --------CL-GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 239
CL E+ + P A+R+ P + G Q + S + +
Sbjct: 310 ILEDGTKKCLRDEMKQTEITPWPRFATRFWPELSGKQTKISSFFVTK 356
>gi|239613861|gb|EEQ90848.1| DNA lyase Apn2 [Ajellomyces dermatitidis ER-3]
Length = 633
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L+ G+R+ V+GDLNI + ID A +F
Sbjct: 165 FRTGFVNILDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPV 224
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ GG D+ R HP+R YTCW A NYG+R
Sbjct: 225 RRVFNQLVY--GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSR 282
Query: 135 IDHILC 140
ID++LC
Sbjct: 283 IDYVLC 288
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 339 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 393
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 459 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 508
Query: 394 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 444
N P + +SC + G + S++ D R D N + W
Sbjct: 509 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 565
Query: 445 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 500
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 566 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 623
Query: 501 KWA 503
W+
Sbjct: 624 IWS 626
>gi|406912418|gb|EKD52031.1| hypothetical protein ACD_62C00127G0006 [uncultured bacterium]
Length = 289
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRI 89
++ + + ++ + + E L + + I V GD+N+A ID + + F K E R
Sbjct: 153 RIPYKMQYNEFLLQKLESLREEHKHIVVCGDMNVAHTEIDIKNPKANENNSGFTKTE-RD 211
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
WF L + DVFR K+P+ R AYT W G Q N G RID+ + L
Sbjct: 212 WFSQFL---SHKYVDVFRHKNPDARHAYTWWSYRPGVRQNNIGWRIDYFVVTEEML 264
>gi|327349957|gb|EGE78814.1| DNA lyase Apn2 [Ajellomyces dermatitidis ATCC 18188]
Length = 642
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L+ G+R+ V+GDLNI + ID A +F
Sbjct: 174 FRTGFVNILDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPV 233
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ GG D+ R HP+R YTCW A NYG+R
Sbjct: 234 RRVFNQLVY--GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSR 291
Query: 135 IDHILC 140
ID++LC
Sbjct: 292 IDYVLC 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 339 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 393
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 468 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 517
Query: 394 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 444
N P + +SC + G + S++ D R D N + W
Sbjct: 518 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 574
Query: 445 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 500
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 575 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 632
Query: 501 KWA 503
W+
Sbjct: 633 IWS 635
>gi|449548040|gb|EMD39007.1| hypothetical protein CERSUDRAFT_47445 [Ceriporiopsis subvermispora
B]
Length = 537
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 64/239 (26%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF 91
F +++ + R L+ + RR + V+GD+NI I+ + F ++ R+WF
Sbjct: 169 FKMNYHLMLQERVRKLIEEERREVIVLGDVNICANPIEHAEGNQPSFLAAFYEHPARLWF 228
Query: 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KHD 150
+ L + G D+ R P+R+ +TCW A + NYG+R+D+IL L KH
Sbjct: 229 KQWL-DPVGPMVDIVRHFWPDRKGMFTCWNMKIMARESNYGSRVDYILVTKGLLPWIKH- 286
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL------- 203
G ++GSDH P+Y+ L
Sbjct: 287 ----------------------------------GDTQPSIKGSDHCPLYIDLHEEITSE 312
Query: 204 -GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 253
GEV ++ + P +A+++ G +QT++S KQG K S S
Sbjct: 313 TGEVMKLRDAMKQDDLRREPPRIAAKFWEEYSG-KQTVLSAFF----GKQGDKAKISPS 366
>gi|261193611|ref|XP_002623211.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
gi|239588816|gb|EEQ71459.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
Length = 629
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F F + + R L+ G+R+ V GDLNI + ID A +F
Sbjct: 161 FRTGFVNILDARVRNLVAMGKRVIVTGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPV 220
Query: 88 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 134
R F ++ GG D+ R HP+R YTCW A NYG+R
Sbjct: 221 RRVFNQLVY--GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSR 278
Query: 135 IDHILC 140
ID++LC
Sbjct: 279 IDYVLC 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 339 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 393
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 455 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 504
Query: 394 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 444
N P + +SC + G + S++ D R D N + W
Sbjct: 505 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 561
Query: 445 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 500
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 562 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 619
Query: 501 KWA 503
W+
Sbjct: 620 IWS 622
>gi|298708328|emb|CBJ48391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 462
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 15 QIMVILFYSMCTGLELIVRIQL---EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPA 71
+ V+ Y +G E +VR+ E++++ + + E L QG+ + + GDLN+A
Sbjct: 269 KFFVVTVYVPNSG-EKLVRLDYRTKEWDVALKAYV----ESLEAQGKPVVLNGDLNVAHL 323
Query: 72 AIDRCDAGPD-FAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 125
+D + G KN E R F S + +GG D FR HP+ AYT W TG
Sbjct: 324 DLDIYNRGAKHLPKNAATTKEERDSFDSWV--NGGKVSDAFRRLHPDAEGAYTYWSVRTG 381
Query: 126 AEQFNYGTRIDHILCA 141
A N G R+D+ +C+
Sbjct: 382 ARPVNRGLRLDYFVCS 397
>gi|425906911|gb|AFY11135.1| DNA lyase [Penicillium roqueforti]
Length = 658
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F + F + + R L+ G+ + V GD+NI+ ID +F
Sbjct: 191 FRMDFLNVLDSRIRNLIAMGKNVVVAGDINISKQGIDAAHGIEAIRKGTMTEEEFISAPS 250
Query: 88 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ + FDV RS HP R YTCW A NYG+RID
Sbjct: 251 RRLFNHLISDGVVIGERDKGREDPVLFDVCRSFHPGRAGMYTCWDQKLNARPGNYGSRID 310
Query: 137 HILCA 141
++LC+
Sbjct: 311 YVLCS 315
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 342 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 401
S GQ L FF R+ +S T + + ++ S T SL+ E +S ++
Sbjct: 489 SAAGQKMLTGFFKPRAVISE-----TTQSPIPLSGSST-PSLNPEPSGQSQEKGKYPEIS 542
Query: 402 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKG 459
S + E + S + ++F+D + V+ +W ++ + +P C G
Sbjct: 543 LQSPGLQEESIREEADISTEG--PTARKFIDDTIIDPIVSKEDWSKL--FTKKPVPPCDG 598
Query: 460 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
H+EPC+ KKPG GR F++C R GP+ E C F WA
Sbjct: 599 HQEPCIRLTTKKPGMNRGRSFWICPRPLGPSGEKEKGTQWRCPTFIWA 646
>gi|194333003|ref|YP_002014863.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
gi|194310821|gb|ACF45216.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
Length = 258
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSK 109
LL +GR I + GD+N+A A+D + R RS L ++ G D+ R +
Sbjct: 137 LLDEGREIILTGDMNVAHTALDVHHSQNKPGAVGLRAEERSALDRQLQLG--LHDIMRER 194
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
HP R YT WP GA + N G RID +G L Q D+
Sbjct: 195 HPGREGLYTWWPYWKGARERNLGWRIDCFYLSGGLLSQVQDV 236
>gi|86196713|gb|EAQ71351.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|440468556|gb|ELQ37712.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
Y34]
gi|440481166|gb|ELQ61780.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
P131]
Length = 626
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 59/211 (27%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + +F +F +M R L+ G+++ + GDLNI +D
Sbjct: 120 FVLIGVYSPATRDE----TRTDFRQAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDT 175
Query: 76 CDAGPDFAKNEFRI---------WFRSMLVESGGS------------FFDVFRSKHPERR 114
K E I F + +V G +D+ R HP+R
Sbjct: 176 AGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVMYDLGREFHPDRI 235
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
YTCW + A N+G+RID++LC+ F+ ++ E
Sbjct: 236 GMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQEG---------- 277
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L GSDH PVY L +
Sbjct: 278 ----------------LLGSDHCPVYATLSD 292
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 308 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 367
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 474
Query: 368 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 427
TS+ S T S + + KIP S + G + + + G
Sbjct: 475 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 525
Query: 428 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 526 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 582
Query: 473 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
G GR F++C R GP+ E CG F W+
Sbjct: 583 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 617
>gi|327306001|ref|XP_003237692.1| DNA lyase [Trichophyton rubrum CBS 118892]
gi|326460690|gb|EGD86143.1| DNA lyase [Trichophyton rubrum CBS 118892]
Length = 603
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 55/190 (28%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 86
+F L F + + R L+ G+R+ + GDLN ID A ++
Sbjct: 169 DFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLSYP 228
Query: 87 FRIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R+ F ++ G + D+ R HP R YTCW A NYG+RI
Sbjct: 229 ARLIFNRLVRPVGSTADTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGSRI 288
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D+ILC+ +++S FV ++ E L GSD
Sbjct: 289 DYILCS-------DNIRSW-FVESNIQEG--------------------------LMGSD 314
Query: 196 HAPVYMCLGE 205
H PVY + +
Sbjct: 315 HCPVYASISD 324
>gi|171676121|ref|XP_001903014.1| hypothetical protein [Podospora anserina S mat+]
gi|170936126|emb|CAP60786.1| unnamed protein product [Podospora anserina S mat+]
Length = 645
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 55/191 (28%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI------- 89
EF +F+ +M R L+ G+ + + GDLNI + +D K E +
Sbjct: 168 EFRHAFTEAMDVRVRNLVAMGKEVVLTGDLNIIRSELDTAGLVEQLRKEEVSLDDFFSSP 227
Query: 90 --WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F + +V G +D+ R HP R YTCW + N+G+RI
Sbjct: 228 SRRFLNQIVFGGRVVGTRDEGREEAVLWDLCREFHPTRTGMYTCWDTRKNCRPGNFGSRI 287
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++LC+ F+ ++ E L GSD
Sbjct: 288 DYVLCSSGI--------KDWFIDANIQEG--------------------------LLGSD 313
Query: 196 HAPVYMCLGEV 206
H PVY +G+
Sbjct: 314 HCPVYATMGDT 324
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 346 QLSLKSFFHKRSNV-SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
Q +LKSFF ++ V S + TD N ++ D S + E +P + P
Sbjct: 483 QGTLKSFFKPKTPVPSPSQEPTGTD---NTASATADISTASELLPAELPPEIQSPNQSLK 539
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 464
S E + + + D+K D N + W ++ L + +P C+ H E C
Sbjct: 540 GSA-ESSAKETPLTTVPTDDK----VFDPIENKAS---WSKL--LGKRVVPKCE-HGEDC 588
Query: 465 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN-----CGYFKWA 503
V+R+ KKPG GR FF+CAR GP+ E C F W+
Sbjct: 589 VSRITKKPGVNCGRSFFMCARPTGPSGKKEDGTTEFCCKTFIWS 632
>gi|317032475|ref|XP_001394977.2| DNA lyase [Aspergillus niger CBS 513.88]
Length = 555
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 495 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 547
>gi|389646177|ref|XP_003720720.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
gi|351638112|gb|EHA45977.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
Length = 656
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 59/211 (27%)
Query: 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDR 75
++I YS T E + +F +F +M R L+ G+++ + GDLNI +D
Sbjct: 150 FVLIGVYSPATRDE----TRTDFRQAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDT 205
Query: 76 CDAGPDFAKNEFRI---------WFRSMLVESGGS------------FFDVFRSKHPERR 114
K E I F + +V G +D+ R HP+R
Sbjct: 206 AGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVMYDLGREFHPDRI 265
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174
YTCW + A N+G+RID++LC+ F+ ++ E
Sbjct: 266 GMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQEG---------- 307
Query: 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L GSDH PVY L +
Sbjct: 308 ----------------LLGSDHCPVYATLSD 322
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 308 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 367
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 454 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 504
Query: 368 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 427
TS+ S T S + + KIP S + G + + + G
Sbjct: 505 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 555
Query: 428 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 472
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 556 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 612
Query: 473 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
G GR F++C R GP+ E CG F W+
Sbjct: 613 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 647
>gi|166208515|gb|ABY84902.1| DNA lyase [Beauveria sp. GN-2004a]
Length = 576
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 55/190 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + G K
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQS 198
Query: 88 --------RIWFRSMLV------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
++ F +V +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVVGDRDDDRGRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCL 203
SDH PVY +
Sbjct: 285 SDHCPVYATM 294
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ +L+ FF ++ S ++ T S + + P+++ S++ PV
Sbjct: 454 GQRTLQGFFKPKAVAS----DTATSAGGLAPASRKQVPVRERTPPQANGRSSQAPVPSPK 509
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 464
++ + + K F E A W ++ L + +P C+ H EPC
Sbjct: 510 TPTE-------TIVTATELFSPAKVFDPIE----AKESWSKL--LGKRVVPRCE-HDEPC 555
Query: 465 VARVVKKPGPTFGRRFFVCAR 485
++ V KKPG GR F++C R
Sbjct: 556 ISLVTKKPGVNCGRSFYICPR 576
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AYT
Sbjct: 138 VILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYT 197
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 178
W + + N G RID+ L + D Q H V
Sbjct: 198 WWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL-------------------- 237
Query: 179 PSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
GSDH PV + L EVP+
Sbjct: 238 --------------GSDHCPVVLTLAEVPQ 253
>gi|380487093|emb|CCF38266.1| DNA lyase [Colletotrichum higginsianum]
Length = 621
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 55/190 (28%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFRSM- 94
F L + +++ R L+ G+++ + GDLN+ ID C+ K + W S
Sbjct: 150 FRLGYLNALDARVRNLVAAGKQVILAGDLNVTRNEIDTCNVREALRKEGMSVEEWMGSPS 209
Query: 95 ------LVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
LV G +D+ R HP R++ +TCW + N G+RID
Sbjct: 210 RRLFNHLVFDGQVAGHRDEGRETPVLYDLTRVFHPTRQDMFTCWDTKRNMRPANNGSRID 269
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
+ILC+ F ++ E L GSDH
Sbjct: 270 YILCSAGI--------KGWFTDSNIQEG--------------------------LMGSDH 295
Query: 197 APVYMCLGEV 206
PVY LG+
Sbjct: 296 CPVYAVLGDT 305
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSKQ 509
+P C+ H EPC+ KKPG GR F++C R G + E CG F W+ K+
Sbjct: 561 VPRCE-HGEPCIIFQTKKPGVNCGRSFYICPRPLGRSGEKEKGTEWRCGTFIWSSDWKKE 619
Query: 510 K 510
+
Sbjct: 620 Q 620
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AYT
Sbjct: 138 VILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYT 197
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 178
W + + N G RID+ L + D Q H V
Sbjct: 198 WWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL-------------------- 237
Query: 179 PSYRWKGGMSTRLEGSDHAPVYMCLGEVPE 208
GSDH PV + L EVP+
Sbjct: 238 --------------GSDHCPVVLTLAEVPQ 253
>gi|429862835|gb|ELA37442.1| DNA lyase [Colletotrichum gloeosporioides Nara gc5]
Length = 605
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 59/193 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W---- 90
+F L + +++ R L+ QG+ + + GDLN+ +D C+ K + W
Sbjct: 152 DFRLGYLNALDVRVRNLVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMP 211
Query: 91 ----FRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
F ++V GG+ D+ R HP+R+ +TCW + N G+
Sbjct: 212 SRRIFNQLVV--GGNVTGARDEGREEPVLHDLTRIFHPDRQGMFTCWDTKRNTRPANNGS 269
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ F ++ E L G
Sbjct: 270 RIDYVLCSSGIKDW--------FTDSNIQEG--------------------------LMG 295
Query: 194 SDHAPVYMCLGEV 206
SDH PVY +G+V
Sbjct: 296 SDHCPVYAIIGDV 308
>gi|325191461|emb|CCA26234.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2356
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|325191457|emb|CCA26230.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2383
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|325191458|emb|CCA26231.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2417
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|325191452|emb|CCA26225.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2419
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|325191454|emb|CCA26227.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2412
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 824 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 876
Query: 500 FKW 502
F+W
Sbjct: 877 FEW 879
>gi|325191455|emb|CCA26228.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2390
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|325191453|emb|CCA26226.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2414
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 824 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 876
Query: 500 FKW 502
F+W
Sbjct: 877 FEW 879
>gi|325191459|emb|CCA26232.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2392
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 829 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 881
Query: 500 FKW 502
F+W
Sbjct: 882 FEW 884
>gi|255945069|ref|XP_002563302.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588037|emb|CAP86108.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 655
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 496
V+ +W +I + +P C+GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 577 VSKEDWSKI--FTKKPVPTCEGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 634
Query: 497 ---CGYFKWA 503
C F WA
Sbjct: 635 QWRCPTFIWA 644
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 66/189 (34%), Gaps = 55/189 (29%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEF 87
F + F +++ R L G+ + V GD+NI+ ID +F
Sbjct: 191 FRMDFLNALDARIRNLTAMGKNVVVAGDINISKQGIDAAHGIEAIRKGTTTEEEFISAPP 250
Query: 88 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ + D+ RS HP R YTCW A NYG+RID
Sbjct: 251 RRLFNHLMSDGVVIGERDKGREDPVLLDLCRSFHPHRTGMYTCWDQKLNARPGNYGSRID 310
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ LH + N + L GSDH
Sbjct: 311 YVLCS---LHMQDWFSDSN-------------------------------IQEGLMGSDH 336
Query: 197 APVYMCLGE 205
PVY + E
Sbjct: 337 CPVYAVIKE 345
>gi|325191460|emb|CCA26233.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2385
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 824 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 876
Query: 500 FKW 502
F+W
Sbjct: 877 FEW 879
>gi|325191456|emb|CCA26229.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2387
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 440 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 499
EW+ + + I C H E C R VKK GP GR+F+ CARA P NCG+
Sbjct: 824 FFEWKDAASSISSGIK-CPVHGEACAERTVKKNGPNVGRQFYTCARA------PVDNCGF 876
Query: 500 FKW 502
F+W
Sbjct: 877 FEW 879
>gi|283135488|gb|ADB11116.1| DNA lyase [Pseudocercospora musae]
Length = 307
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 345 GQLSLKSFFHKRS---NVSHDDNN-SITDTSLNVNNSVTDT----SLSQEEVPESHHHSN 396
GQ SLK FF ++ +V+++ + D ++ N + T S E PE+
Sbjct: 123 GQQSLKGFFQTKAVPVSVANESTEMGVKDETVETNKTAPTTGGVESHEDNEKPETLTEPP 182
Query: 397 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL---DKERNNVALLEWRRIQQLMETS 453
+ P S ++ + + D +K L +K +N L R +
Sbjct: 183 QTP------SASQMTANTARAETPDPSPRKFASKLASAEKSQNQWGALFSRPV------- 229
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
P+C+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 230 APICEGHNEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQWRCGTFIW 282
>gi|283135495|gb|ADB11122.1| DNA lyase [Pseudocercospora musae]
Length = 324
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 345 GQLSLKSFFHKRS---NVSHDDNN-SITDTSLNVNNSVTDT----SLSQEEVPESHHHSN 396
GQ SLK FF ++ +V+++ + D ++ N + T S E PE+
Sbjct: 140 GQQSLKGFFQTKAVPVSVANESTEMGVKDETVETNKTAPTTGGVESHEDNEKPETLTEPP 199
Query: 397 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFL---DKERNNVALLEWRRIQQLMETS 453
+ P S ++ + + D +K L +K +N L R +
Sbjct: 200 QTP------SASQMTANTARAETPDPSPRKFASKLASAEKSQNQWGALFSRPV------- 246
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
P+C+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 247 APICEGHNEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQWRCGTFIW 299
>gi|119493739|ref|XP_001263956.1| DNA lyase-like protein, putative [Neosartorya fischeri NRRL 181]
gi|119412117|gb|EAW22059.1| DNA lyase-like protein, putative [Neosartorya fischeri NRRL 181]
Length = 247
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
GQ +LK FF +S ++ + +++ + + + P + + + +T +
Sbjct: 82 GQRTLKGFFKLKSGLASQMAIAQDPATVSTMPTKQPAASPTKSTPVTEPPALEALLTAPA 141
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 464
NS+ + + +D V+ +W ++ + IP C+GH+EPC
Sbjct: 142 GEASPGEQPNSATPTAPASPQSNDTIIDP---IVSKEDWSKL--FTKKPIPKCEGHQEPC 196
Query: 465 VARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY----FKWA 503
+ KKPG GR F++C R GP+ N E + F WA
Sbjct: 197 FSLTTKKPGINCGRSFWICLRPLGPSGNKEKGIQWRFPTFIWA 239
>gi|165874703|gb|ABY68234.1| DNA lyase [Beauveria bassiana]
Length = 576
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 87
++EF SF ++ R L+ G++ + GDLNI + +D + G K
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQAILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQS 198
Query: 88 --------RIWFRSMLV------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
++ F +V +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVVGDRDDDRGRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISFVTKKPGVNCGRSFYICPR 576
>gi|425778482|gb|EKV16607.1| DNA lyase Apn2 [Penicillium digitatum PHI26]
gi|425784222|gb|EKV22013.1| DNA lyase Apn2 [Penicillium digitatum Pd1]
Length = 595
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 55/187 (29%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEF 87
F + F +++ R L G+ + V GD+NI+ +ID +F
Sbjct: 127 FRMDFLNALDSRIRNLTAMGKNVIVAGDINISKQSIDAAHGIEAIRKGTMTEEEFVSAPS 186
Query: 88 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F ++ + FDV RS H +R YTCW NYG+RID
Sbjct: 187 RRLFNHLMSDGVVIGERDKGRENPVLFDVCRSFHLDRTGMYTCWDQKLNTRPGNYGSRID 246
Query: 137 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 196
++LC+ +D + W + + L GSDH
Sbjct: 247 YVLCS--------------------------LDLRNWFSDS--------NIQEGLMGSDH 272
Query: 197 APVYMCL 203
PVY+ +
Sbjct: 273 CPVYVVI 279
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 496
V+ +W ++ + +P C GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 516 VSKEDWSKL--FAKKPVPPCDGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 573
Query: 497 ---CGYFKWA 503
C F WA
Sbjct: 574 QWRCSTFIWA 583
>gi|62085846|gb|AAX63314.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|408392228|gb|EKJ71586.1| hypothetical protein FPSE_08225 [Fusarium pseudograminearum CS3096]
Length = 600
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W---- 90
+F L F ++ R L+ G+++ + GDLNI + +D + K F + W
Sbjct: 167 DFRLGFLQALDVRIRNLVAAGKQVVLTGDLNIVRSEVDSTNVSETLRKGNFDLSEWMNMP 226
Query: 91 ----FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F ++ E +D+ R HPER TCW + N G+RI
Sbjct: 227 ARRIFNQLIFEGSVLGERDQGRQAPVLWDLCRYFHPERAGMNTCWDTKRNTRPANNGSRI 286
Query: 136 DHILCA 141
D++LC+
Sbjct: 287 DYVLCS 292
>gi|165874707|gb|ABY68236.1| DNA lyase [Beauveria caledonica]
Length = 559
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ V GDLNI +D + K + W
Sbjct: 131 RIEFRQSFVEALDVRIRNLIAAGKQVIVAGDLNIIRNEMDSSNIAESLQKEGISMDEWQS 190
Query: 91 ------FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+L E +D+ R HP R +TCW + N G+
Sbjct: 191 MPTRRILNQLLFEGTVVGDRDDDRERAVLWDICRCFHPTRLGMHTCWDAKRKTRPANVGS 250
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 251 RIDYILCS--------DGLKSWFVESNIQEG--------------------------LMG 276
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 277 SDHCPVYATMSD 288
>gi|62085782|gb|AAX63282.1| DNA lyase [Beauveria bassiana]
gi|62085784|gb|AAX63283.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ G+++ + GDLNI +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAVGKQVVLAGDLNIIRGEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|154286664|ref|XP_001544127.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
gi|150407768|gb|EDN03309.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
Length = 616
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 329 PFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 387
P + R+ A ++ GQ +LK FF ++ T S + N + +S + E
Sbjct: 339 PKRLKRSESSATTTKAKGQKTLKGFFGPKTTPC------TTVASADDENDHSKSSATTEG 392
Query: 388 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS----HDQDEKKGKRFLDKERNNVALLEW 443
+ K P + C + +G S + +D+D R D N + W
Sbjct: 393 GSPQKGTAIKPPCSSGGCCDSQENGCQQSQTAGPPAYDKDNDNSGRVHDPIANKES---W 449
Query: 444 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGY 499
++ + P C GH EPC++ V KK G GR F++C+R GP + + C
Sbjct: 450 SKL--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDT 507
Query: 500 FKWA 503
F W+
Sbjct: 508 FIWS 511
>gi|62085804|gb|AAX63293.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQS 198
Query: 91 -----FRSMLVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ L+ G F +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFKGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085780|gb|AAX63281.1| DNA lyase [Beauveria sp. ARSEF 32]
Length = 579
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-- 90
++EF SF ++ R L+ G+++ + GDLNI + +D + K + W
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQS 198
Query: 91 -----FRSMLVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ L+ G F +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|422292922|gb|EKU20223.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526]
gi|422294015|gb|EKU21315.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526]
Length = 617
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 36/143 (25%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD--AGPDFAKNEFRIWFRSML 95
F +F++++ R GR + + GDLN A D + + + A + W R++L
Sbjct: 137 FKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLL 196
Query: 96 ---------VESGGS------------------------FFDVFRSKHPERREAYTCWPS 122
+ GG D FR HP R +A++CW +
Sbjct: 197 GSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCN 256
Query: 123 NTGAEQFNYGTRIDHILCAGPCL 145
T A NYG RID+IL A P L
Sbjct: 257 QTAARHTNYGRRIDYIL-ASPGL 278
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 430 FLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEG 488
L+ R V L +R + + P C+GH EP V R VKK GR FF CAR G
Sbjct: 520 MLEATRREVFLSAFRSQRD----NTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVG 575
Query: 489 PASNPEANCGYFKW 502
+ EA C F W
Sbjct: 576 TDGDKEARCRDFLW 589
>gi|116193731|ref|XP_001222678.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
gi|88182496|gb|EAQ89964.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
Length = 646
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI------- 89
EF ++ +++ R L+ G+++F+ GDLNI + D K E +
Sbjct: 165 EFRQAYINAIDVRVRNLVAMGKQVFLCGDLNIIRSEQDTAGLAERLRKEEMTLDDFFSTP 224
Query: 90 --WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F + +V G +D+ R HP R YTCW + A N+G+RI
Sbjct: 225 SRCFLNHIVFGGHVAGEREEGREEPVLWDLCREFHPTRPGMYTCWDTRKNARPGNFGSRI 284
Query: 136 DHILCA 141
D++LC+
Sbjct: 285 DYVLCS 290
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 344 LGQLSLKSFFHKRSNVSHD----DNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 399
GQ SLK FF ++ +N+S+ T N S T + + P+ + +
Sbjct: 488 FGQSSLKGFFKPKTPTPDTTPTVENHSVVGTPTASNKSATARTSGERRGPDEPSSTAAL- 546
Query: 400 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 459
D + E S D + K W ++ L + +P C+
Sbjct: 547 ENDTQNPIEESPKPQSFSPEKVFDPIEAKE------------SWSKL--LGKRVLPRCE- 591
Query: 460 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
H + C V KKPG GR FF+CAR GP+ + E C F W+
Sbjct: 592 HGDKCQTLVTKKPGVNCGRSFFMCARPLGPSGDKEQGTEFRCRTFIWS 639
>gi|149021478|gb|EDL78941.1| nei like 3 (E. coli) (predicted) [Rattus norvegicus]
Length = 316
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 211 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 258
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 424 EKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 480
E KG++F EW + S P C GH + + + V K GP G+ F
Sbjct: 235 ENKGRQFYACSLPRGAQCGFFEW------ADLSFPFC-GHGKRSIMKTVLKIGPNNGKNF 287
Query: 481 FVCARAEGPASNPEANCGYFKWAFS 505
FVC + E C +F+WA S
Sbjct: 288 FVCPLEK------EKQCNFFQWAES 306
>gi|254796778|ref|YP_003081615.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590017|gb|ACT69379.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
Length = 260
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 35 QLEFNLSFSSSMYYRWE-FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 93
+ E+ + F ++ R +LL I + GD+N AP ID D F I RS
Sbjct: 118 RFEYKMQFHDALARRIHCYLLNNNDIILLGGDMNAAPEDIDVYDHVKLDGCTGFHIEERS 177
Query: 94 MLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
L E FD FR K+P ++E ++ W G Q N G RIDHIL +
Sbjct: 178 KLRELLNLGLFDTFRMKYPTKQE-FSWWDYRGGGLQRNEGMRIDHILASA 226
>gi|348689657|gb|EGZ29471.1| hypothetical protein PHYSODRAFT_470148 [Phytophthora sojae]
Length = 916
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
S+ C GH EPC R V+K GP GR+F+ C R S + +CGYF+W
Sbjct: 732 SVVKCPGHGEPCAERTVRKEGPNKGRQFYTCRR-----SQTDNSCGYFQW 776
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
+ PLC GH C+ R ++PGP R F+ C+ +G S CGYF+W Q+
Sbjct: 803 AAPLCSGHNVSCILRTTRRPGPNQNREFYSCS-FQGADS-----CGYFEWKDEMGSQR 854
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
M + +P C H PC R V + GP GR F VC +G C +F W
Sbjct: 680 MTSDVPRCGDHGLPCAEREVSRDGPNKGRMFHVCPLPQG------EQCDFFAW 726
>gi|319790081|ref|YP_004151714.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
gi|317114583|gb|ADU97073.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
Length = 259
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 37/143 (25%)
Query: 62 VVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 116
VVGD N+A + +D D P F ++E R F +L FD+FR HP+
Sbjct: 143 VVGDFNVARSELDVYDPAVWRGRPGFMEDE-RQAFEELL---SFGLFDLFRELHPDE-PG 197
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 176
YT W TG N G RID+IL P L + EC +L + +R G
Sbjct: 198 YTWWDIETGGFARNRGLRIDYILVTEPLLKR-------------AQECRVLREARRKLGG 244
Query: 177 NAPSYRWKGGMSTRLEGSDHAPV 199
P SDHAP+
Sbjct: 245 LLP--------------SDHAPL 253
>gi|281332206|ref|NP_001163817.1| endonuclease VIII-like 3 [Rattus norvegicus]
Length = 606
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 501 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 548
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 326 HISPFHVDRARKKAKKSQL-----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTD 380
HIS V+ + + K + Q L + HK+ +H + + ++NS
Sbjct: 432 HISKEGVNYITQPSNKVNMSSTVGAQSKLFTSAHKKLKTAHSLATELKSYNSGLSNSELQ 491
Query: 381 TSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNN 437
T++ + P S H S C H V V E KG++F
Sbjct: 492 TNIRSD--PCSLHASRP------QCKTHSRPCVLRVV--RKDGENKGRQFYACSLPRGAQ 541
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANC 497
EW + S P C GH + + + V K GP G+ FFVC + E C
Sbjct: 542 CGFFEW------ADLSFPFC-GHGKRSIMKTVLKIGPNNGKNFFVCPLEK------EKQC 588
Query: 498 GYFKWAFS 505
+F+WA S
Sbjct: 589 NFFQWAES 596
>gi|374341885|emb|CBX60085.1| DNA lyase, partial [Colletotrichum gloeosporioides]
Length = 215
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 59/195 (30%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRS 93
+++ R L+ QG+ + + GDLN+ +D C+ K + W F
Sbjct: 2 NALDVRVRNLVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQ 61
Query: 94 MLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
++V GG+ D+ R HP+R+ +TCW + N G+RID+ILC
Sbjct: 62 LVV--GGNVTGARDEGREKSVLHDLTRIFHPDRQGMFTCWDTKRNTRPANNGSRIDYILC 119
Query: 141 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
F ++ E L GSDH PVY
Sbjct: 120 TSGI--------KDWFTDSNIQEG--------------------------LMGSDHCPVY 145
Query: 201 MCLGEVPEIPQHSTP 215
+G+V + P
Sbjct: 146 AIIGDVVKKDDQEVP 160
>gi|339500619|ref|YP_004698654.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
gi|338834968|gb|AEJ20146.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
Length = 258
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRI 89
+L++ L+F +M L+ G+ I + GD NIA ID + P + E R
Sbjct: 122 RLDYKLAFCDAMLETCNKLVQSGKNIILCGDYNIAHTPIDLARPEDNEENPGYLPEE-RA 180
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
W L + D FR++HP YT W T A + N G RID+
Sbjct: 181 WMTKFLF---AGYVDTFRAEHPGEGGHYTWWSYRTRARERNIGWRIDY 225
>gi|50308837|ref|XP_454423.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643558|emb|CAG99510.1| KLLA0E10473p [Kluyveromyces lactis]
Length = 499
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
M P+C+ H E V RV K +FG++F+VC R++G +PEA+CG+F+W
Sbjct: 448 MLGKAPVCE-HGEEAVLRV-SKTDKSFGKKFWVCNRSKGEKDDPEASCGFFQW 498
>gi|407918296|gb|EKG11567.1| Exodeoxyribonuclease III xth [Macrophomina phaseolina MS6]
Length = 1051
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 69/192 (35%), Gaps = 59/192 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--------- 87
+F +F S + R L +G+R+ + GDLN++ + ID +A + K
Sbjct: 170 DFRHAFFSCLDARIRNLTKEGKRVILCGDLNVSRSEIDTANAEDNMRKEGITHEEYISVG 229
Query: 88 -RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F ML GG +D R HP R+ +T W A N+G+
Sbjct: 230 NRRIFNQML--EGGDVVPPRDSGREVPVLWDTCREFHPNRKGMFTHWEQKINARPGNFGS 287
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID +LC+ I K W + L G
Sbjct: 288 RIDFVLCS--------------------------ISMKEWVES--------ADIQEGLMG 313
Query: 194 SDHAPVYMCLGE 205
SDH PVY L E
Sbjct: 314 SDHCPVYAILKE 325
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 396 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 455
N P D +V ++ +S+ D F+D V+ W ++ + S P
Sbjct: 584 NNPPNADDPIAVADITPADST--DLDTSTPASPPFIDP---IVSKESWDKL--FTKPSPP 636
Query: 456 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 485
C+ H EPC+ KKPG GR F++C R
Sbjct: 637 RCEDHNEPCITLTTKKPGVNCGRAFWICPR 666
>gi|374341899|emb|CBX60092.1| DNA lyase, partial [Colletotrichum kahawae]
Length = 215
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 59/195 (30%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRS 93
+++ R L+ QG+ + + GDLN+ +D C+ K + W F
Sbjct: 2 NALDVRVRNLVTQGKEVILTGDLNVILEEVDTCNLREMLRKEGMTVEDWKGMPSRRIFNQ 61
Query: 94 MLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
++V GG+ D+ R HP R+ +TCW + N G+RID+ILC
Sbjct: 62 LVV--GGNVTGARDEGREKPVLHDLTRIFHPARQGMFTCWDTKRNTRPANNGSRIDYILC 119
Query: 141 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
+ F ++ E L GSDH PVY
Sbjct: 120 SSGI--------KEWFTDSNIQEG--------------------------LMGSDHCPVY 145
Query: 201 MCLGEVPEIPQHSTP 215
+G+V + + P
Sbjct: 146 ATIGDVVKKDEKEIP 160
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPD-------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID A PD F E R F +L S + D +R +P+
Sbjct: 206 VIVCGDLNVAHEEIDL--ARPDTNHKTAGFTDQE-RSGFTKLL--SSANLIDTYRHFYPD 260
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
RREAY+ W TGA N G R+D+ L + L D + + C V D
Sbjct: 261 RREAYSFWSYRTGARLINNGWRLDYFLVSQRILANVGDQE----IRCGVTGSD 309
>gi|88608769|ref|YP_506301.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600938|gb|ABD46406.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 265
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 35 QLEFNLSFSSSMYYRWE-FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 93
+ E+ + F ++ R +LL + + GD+N AP ID D F I RS
Sbjct: 123 RFEYKMQFHDALARRIHGYLLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERS 182
Query: 94 MLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
L E FD FR K+P ++E ++ W G Q N G RIDHIL + + D
Sbjct: 183 KLRELLNLGLFDTFRMKYPTKQE-FSWWDYRGGGLQRNEGMRIDHILASAEGMDHLLD 239
>gi|374341889|emb|CBX60087.1| DNA lyase, partial [Colletotrichum gloeosporioides]
Length = 215
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 59/186 (31%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRS 93
+++ R L+ QG+ + + GDLN+ +D C+ K + W F
Sbjct: 2 NALDVRVRNLVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQ 61
Query: 94 MLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
++V GG+ D+ R HP+R+ +TCW + N G+RID+ILC
Sbjct: 62 LVV--GGNVTGARDEGREKPVLHDLTRIFHPDRQGMFTCWDTKRNTRPANNGSRIDYILC 119
Query: 141 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
+ F ++ E L GSDH PVY
Sbjct: 120 SSGI--------KDWFTDSNIQEG--------------------------LMGSDHCPVY 145
Query: 201 MCLGEV 206
+G+V
Sbjct: 146 AIIGDV 151
>gi|402084596|gb|EJT79614.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 550
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 59/193 (30%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD----------AGPDFAKNE 86
+F L F +M R L+ G+ + + GDLNI +D + DF
Sbjct: 168 DFRLGFQEAMDVRVRNLVAMGKHVVLTGDLNIIRGELDTAGLVDWLRKANMSLDDFLSTP 227
Query: 87 FRIWFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
+ ++ GG D+ R HP R+ YTCW + A N+G+
Sbjct: 228 SQRLLNHLVF--GGVVIGKRDHGRETPVMCDLGREFHPIRQGMYTCWETRRNARPSNFGS 285
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID++LC+ S+ G+ L G
Sbjct: 286 RIDYVLCS----------------------------------AGIRSWFVDAGIQEGLLG 311
Query: 194 SDHAPVYMCLGEV 206
SDH PVY L ++
Sbjct: 312 SDHCPVYATLSDI 324
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W +I L + P C+ H EPC + V KKPG GR F++CAR GP+ E + CG
Sbjct: 482 WSKI--LGKRVAPNCE-HGEPCTSLVTKKPGINCGRSFYMCARPLGPSGEKEKDTEWRCG 538
Query: 499 YFKWAFSKSKQK 510
F W+ K K
Sbjct: 539 TFIWSSDWGKSK 550
>gi|301092946|ref|XP_002997323.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 907
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 457 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
C GH EPC R VKK GP GR+F++C R + + +CG+F W
Sbjct: 741 CPGHNEPCAERTVKKDGPNKGRQFYICRRGQT-----DNSCGFFLW 781
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 444 RRIQQL--METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501
RRI + + + IP C H PCV + V + GP GR F+ C+ +G C +F
Sbjct: 676 RRILRAPSLTSDIPRCDDHGLPCVEKEVTRDGPNTGRMFYKCSLPQG------EQCDFFA 729
Query: 502 W 502
W
Sbjct: 730 W 730
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+S P C GH C R +KPGP R F+ C+ + P + CG+ +W
Sbjct: 805 SSAPKCSGHNTLCAVRKTRKPGPNQYREFYACS-FQAPDT-----CGFVEW 849
>gi|390939744|ref|YP_006403481.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
gi|390192851|gb|AFL67906.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
Length = 254
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + F S E L +G+ I + GD+N A ID + + + F R W
Sbjct: 117 RLSHKMKFYSDFLAHTEALRQKGKGIIICGDVNTAHREIDLANPKANENTSGFLPIERAW 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
++L E G + D FR H + ++AY+ W +GA + N G RID+ +
Sbjct: 177 MDTLL-EKG--YLDTFREVHGDVKDAYSWWSYRSGARERNVGWRIDYFFIS 224
>gi|62085810|gb|AAX63296.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-- 87
++EF SF ++ R L+ +++ + GDLNI + +D + K NE+
Sbjct: 139 RIEFRQSFVEALDVRIRNLIAASKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQS 198
Query: 88 ---RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R +L E +D+ R HP R +TCW + N G+
Sbjct: 199 MPTRRILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGS 258
Query: 134 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 193
RID+ILC+ D FV ++ E L G
Sbjct: 259 RIDYILCS--------DGLKSWFVDSNIQEG--------------------------LMG 284
Query: 194 SDHAPVYMCLGE 205
SDH PVY + +
Sbjct: 285 SDHCPVYATMSD 296
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 50/171 (29%)
Query: 42 FSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK---------NEFRIWFR 92
F Y+ + L + I VGDLN+A ID + ++ K N+F
Sbjct: 182 FWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAGFTDQERNDF----- 236
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ L+++G F DVFR +PE+ YT W + A + N G R+D+ + + +++
Sbjct: 237 TRLLDAG--FVDVFRRLNPEKEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNK----- 289
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
V ECDIL K GSDH P+ + +
Sbjct: 290 --------VKECDILCSVK---------------------GSDHCPLSLTI 311
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 50/171 (29%)
Query: 42 FSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK---------NEFRIWFR 92
F Y+ + L + I VGDLN+A ID + ++ K N+F
Sbjct: 175 FWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAGFTDQERNDF----- 229
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ L+++G F DVFR +PE+ YT W + A + N G R+D+ + + +++
Sbjct: 230 TRLLDAG--FVDVFRRLNPEKEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNK----- 282
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
V ECDIL K GSDH P+ + +
Sbjct: 283 --------VKECDILCSVK---------------------GSDHCPLSLTI 304
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSK 109
L + + + + GDLN A ID P++ K+ + I LV +G + D FR
Sbjct: 136 LEEKKPVVICGDLNAAHRDIDLARPKPNYNKSAGYTQQEIDGIDNLVAAG--YVDTFRYV 193
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
HPE+ + Y+ W GA + N G RID+ L + Q HD + HN
Sbjct: 194 HPEKVK-YSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHN 238
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 114
+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 136 KAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQE 193
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
EAYT W + N G RID+ + +
Sbjct: 194 EAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|374341887|emb|CBX60086.1| DNA lyase, partial [Colletotrichum gloeosporioides]
gi|374341891|emb|CBX60088.1| DNA lyase, partial [Colletotrichum asianum]
gi|374341895|emb|CBX60090.1| DNA lyase, partial [Colletotrichum siamense]
gi|374341897|emb|CBX60091.1| DNA lyase, partial [Colletotrichum gloeosporioides]
Length = 215
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 59/186 (31%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRS 93
+++ R L+ QG+ + + GDLN+ +D C+ K + W F
Sbjct: 2 NALDVRVRNLVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQ 61
Query: 94 MLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
++V GG+ D+ R HP R+ +TCW + N G+RID+ILC
Sbjct: 62 LVV--GGNVTGARDEGREKPVLHDLTRIFHPTRQGMFTCWDTKRNTRPANNGSRIDYILC 119
Query: 141 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
+ F+ ++ E L GSDH PVY
Sbjct: 120 SSGI--------KDWFMDSNIQEG--------------------------LMGSDHCPVY 145
Query: 201 MCLGEV 206
+G+V
Sbjct: 146 AIIGDV 151
>gi|406990745|gb|EKE10369.1| Exonuclease III [uncultured bacterium]
Length = 257
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 37/166 (22%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFRS 93
+ L F +Y + LL + + GD NI P+ D D + R RS
Sbjct: 119 YKLDFLKHLYAHAQTLLTYDEALILGGDFNITPSDEDVYDPQEWHEQILCSTQEREALRS 178
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQS 153
++ DV R+ H +E YT W GA Q N+G RIDH+L + Q D
Sbjct: 179 IIYLG---VTDVLRASHQNAKELYTWWDYRGGAFQNNFGLRIDHLLLSS----QAAD--- 228
Query: 154 HNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPV 199
HV C++ K+W+ + SDHAP+
Sbjct: 229 ------HVKSCEV---DKKWRAVE--------------KASDHAPI 251
>gi|67606491|ref|XP_666752.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis
TU502]
gi|54657802|gb|EAL36520.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis]
Length = 498
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 73/214 (34%), Gaps = 61/214 (28%)
Query: 58 RRIFVVGDLNIAPAAID---------RCDAGPDFAKNEFRIW-----------FRSMLVE 97
R + + GD NI ID C P KN I R M +E
Sbjct: 238 RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCVLKNTKEILETSSFAKAYMHMRRMNIE 297
Query: 98 --SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
G D +R +P YTCW + N GTRID L + + +
Sbjct: 298 MIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLVSKGLISESI------ 351
Query: 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL--GEVPEI---P 210
+C+IL + GSDH P+ + L GE +
Sbjct: 352 -------KCEIL---------------------DHIYGSDHCPILLILKTGEFESLYNNE 383
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 244
+ PS+ S+YLP + Q T+ L ++ Q
Sbjct: 384 KRKPPSICSKYLPQCKQRQSTISQFLTLSKIEGQ 417
>gi|190335077|gb|ACE74242.1| putative DNA lyase [Aspergillus alliaceus]
Length = 78
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 438 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 496
V+ +W ++ + P C+GH+EPC+ KKPG GR F++C R GP+ N E
Sbjct: 6 VSKEDWSKL--FTKKPAPKCEGHQEPCITLSTKKPGINCGRSFWICPRPLGPSGNKERGT 63
Query: 497 ---CGYFKWA 503
C F WA
Sbjct: 64 QWRCSTFIWA 73
>gi|111054099|gb|ABH04240.1| DNA lyase-like protein [Pseudocercospora fijiensis]
Length = 622
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
PLC+GH EPC + KK G GR F++CAR GP+ E CG F W+
Sbjct: 540 PLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQWRCGTFIWS 592
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 27/128 (21%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAK 84
F F ++ +R L+ G+ + +VGDLN+ ID +GP +F
Sbjct: 167 FRHGFVCALDHRIRNLIKAGKSVILVGDLNVTRHEID---SGPTLEEMRKGLITHEEFIS 223
Query: 85 NEFRIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 133
R F L++ G F+D R HP+R+ YT W + A N+G+
Sbjct: 224 GPNRRIFNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGS 283
Query: 134 RIDHILCA 141
RID +L +
Sbjct: 284 RIDFVLVS 291
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ V GDLN+A ID +A ++ F R S+L+++G F D FR+ +P+R +
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAG--FIDTFRTFYPDRTDV 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 169
Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 197 YSWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + GDLN+A ID R AG F+ E R F ++L+E+G F D F
Sbjct: 135 LAETKPVVFCGDLNVAHEEIDIARPKENRFSAG--FSDQE-RAGF-TLLLEAG--FTDTF 188
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 158
R+ HPE Y+ W GA N G RID+ + P + D H VT
Sbjct: 189 RALHPEEPGWYSWWSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIHPDVT 240
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 41/154 (26%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 109
L + + + + GDLN+A ID +A + + F R F +L G F D FR
Sbjct: 134 LDEKKPVIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNELL---GAGFLDSFREL 190
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 169
+P+R +AYT W + N G RID+ L + + H+ E
Sbjct: 191 YPDRTDAYTWWSFMPKVRERNIGWRIDYFLISEK-------------LRPHLKEA----- 232
Query: 170 YKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
G+ + + GSDH PVY+ L
Sbjct: 233 ----------------GIDSHIMGSDHCPVYVEL 250
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSK 109
L CQ + + GDLN+A ID +A + + F R S L+ESG F D FR K
Sbjct: 133 LNCQ-KPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESG--FVDSFRYK 189
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
HPE + YT W + N G RID+ + + Q
Sbjct: 190 HPEETDHYTWWSYMNKVRERNIGWRIDYFVVSNQLKEQ 227
>gi|268679182|ref|YP_003303613.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268617213|gb|ACZ11578.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 254
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + F S E L G+ I + GD+N A ID + + + F R W
Sbjct: 117 RLRHKMQFYSDFLAHTEALRTMGKGIIICGDVNTAHREIDLANPKANEDISGFLPIERAW 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
++L + + D FR H ++AY+ W +GA + N G RID+ +
Sbjct: 177 IDTLLAKG---YLDTFREVHGNVKDAYSWWSYRSGARERNVGWRIDYFFIS 224
>gi|354508526|gb|AER26938.1| DNA lyase-like protein, partial [Peyronellaea pinodes]
Length = 152
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 346 QLSLKSFFHK--RSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 403
Q SL+ FF RS + D +IT S T + + S S + VT
Sbjct: 1 QQSLRGFFQSQTRSKATGPDPATIT-----TPQSTPQTRTNGDARTSSLSASTSVHVTPG 55
Query: 404 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEP 463
+ ++ C ++ K EW ++ + P C+GH +P
Sbjct: 56 TTPPAAPALQTTTSCDPGAAQQASKE------------EWTKL--FSKRPPPRCEGHAKP 101
Query: 464 CVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
C++ KKP GR F++C R GP+ E+ CG F WA
Sbjct: 102 CISLTTKKPSVNRGRHFWICPRPIGPSGQKESGTQWRCGTFIWA 145
>gi|302919090|ref|XP_003052788.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
gi|256733728|gb|EEU47075.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
Length = 653
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W---- 90
+F F ++ R L+ G+++ + GDLN+ +A+D + K + + W
Sbjct: 185 DFRSGFFQALDVRIRNLVADGKQVILTGDLNVVRSAMDSTNVAEMLRKEDISLDDWLNMP 244
Query: 91 ----FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F ++ E +D+ R HPER TCW + N G+RI
Sbjct: 245 VRRIFNQLIFEGKVVGERDEGREEPVLWDLCRCFHPERAGMNTCWDTKRNTRPANNGSRI 304
Query: 136 DHILCA 141
D+ILC+
Sbjct: 305 DYILCS 310
>gi|91763300|ref|ZP_01265264.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|91717713|gb|EAS84364.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 258
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + I + GD NI P+A D + + E R FR M+ F D +R
Sbjct: 137 LSKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFREMI---NLGFHDAYRH 193
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
H E+ E YT W GA Q N G RIDH L + L+
Sbjct: 194 IHGEK-EGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLN 230
>gi|71083659|ref|YP_266379.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|71062772|gb|AAZ21775.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
Length = 258
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + I + GD NI P+A D + + E R FR M+ F D +R
Sbjct: 137 LSKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFREMI---NLGFHDAYRH 193
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
H E+ E YT W GA Q N G RIDH L + L+
Sbjct: 194 IHGEK-EGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLN 230
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 40/176 (22%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-- 92
+LE+ L + + R+ L + + V GDLN+A ID +A + + F R
Sbjct: 115 RLEYRLEWEER-FRRYLQELDAHKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERDK 173
Query: 93 -SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
+ L+E+G F D FR ++P+R +AYT W + N G RID+ L
Sbjct: 174 MTRLLEAG--FIDTFRHRYPDRTDAYTWWSFMPKVRERNIGWRIDYFL------------ 219
Query: 152 QSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207
V+ +N D + D K + + GSDH PV + + ++P
Sbjct: 220 -----VSARLN--DFIKDAK---------------IDAAITGSDHCPVILEMEDIP 253
>gi|337734384|gb|AEI72618.1| DNA lyase [Epichloe festucae]
Length = 642
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 498
W ++ L + +P C+ H+EPC++ V KKPG GR F++C R GP+ E CG
Sbjct: 572 WSKL--LGKRVVPRCE-HEEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKEKGSEWRCG 628
Query: 499 YFKWA 503
F W+
Sbjct: 629 TFIWS 633
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W----- 90
F SF ++ R L+ G+ + + GDLN+ + +D + K + + W
Sbjct: 169 FRTSFFEALDVRIRNLVSMGKEVILTGDLNVIRSEMDSTNVLETLRKEDMTLEEWVSLPT 228
Query: 91 ---FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
F ++ E +D+ R+ HP R TCW + N G+RID
Sbjct: 229 RRIFNQLIFEGSIVGERDEERQEPVLWDLCRNFHPTRLGMNTCWDTKRNTRPANNGSRID 288
Query: 137 HILCA 141
+ILC+
Sbjct: 289 YILCS 293
>gi|70671461|emb|CAI59779.2| putative DNA lyase [Xanthoria elegans]
Length = 167
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 406 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE---WRRIQQLMETSIPLCKGHKE 462
S + G S + KKG D ++ + + W ++ + + P C+GH E
Sbjct: 54 SATQDSGSTESQSAQASPSKKGAEAEDSDKVHDPIQSKESWSKL--FTKPAAPRCEGHDE 111
Query: 463 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
PC + KK G GR F++CAR GP+ E N C F W
Sbjct: 112 PCKTMLTKKSGMNCGRSFWMCARPLGPSGAKEKNTQWRCATFIW 155
>gi|238573567|ref|XP_002387395.1| hypothetical protein MPER_13896 [Moniliophthora perniciosa FA553]
gi|215442551|gb|EEB88325.1| hypothetical protein MPER_13896 [Moniliophthora perniciosa FA553]
Length = 118
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------ 490
W+ + M+ P C H EP V KPG G++FFVC+R GP
Sbjct: 36 WKTLMAPMQP--PRCTVHDEPAKEFTVNKPGANKGKKFFVCSRPVGPGYDMGRGERLRED 93
Query: 491 SNPEANCGYFKWA 503
NPE C +FKW+
Sbjct: 94 VNPEYKCNFFKWS 106
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 169
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 199 WWSYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARNKNIGWRIDYFLCSNP 223
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|410914313|ref|XP_003970632.1| PREDICTED: endonuclease 8-like 3-like isoform 2 [Takifugu rubripes]
Length = 571
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 36/146 (24%)
Query: 364 NNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD 423
+N+ + SLN + T++S + SHH + V H Q
Sbjct: 448 SNNAQNGSLNSCSQQTESSGAGAPCCTSHHRPATLRVV------------------HKQG 489
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+RF L +E N EW + + P C H + C+ R V K GP GR
Sbjct: 490 ENKGRRFYACSLPRE-NKCNFFEW------ADMNFPFCH-HGKRCLMRTVLKLGPNNGRN 541
Query: 480 FFVCARAEGPASNPEANCGYFKWAFS 505
FF C+ +G C +F+WA S
Sbjct: 542 FFTCSFQKG------KQCDFFQWAHS 561
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 416 SVCSHDQDEKKGK----RFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKK 471
SV S+ Q KK + F N +L + + P C H P RVV K
Sbjct: 428 SVASYSQPSKKMRIDHSPFPSNNAQNGSLNSCSQQTESSGAGAPCCTSHHRPATLRVVHK 487
Query: 472 PGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
G GRRF+ C+ E C +F+WA
Sbjct: 488 QGENKGRRFYACSLPR------ENKCNFFEWA 513
>gi|348617561|ref|ZP_08884098.1| Exodeoxyribonuclease III Xth [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347817038|emb|CCD28702.1| Exodeoxyribonuclease III Xth [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 259
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+ + L + ++Y + + ++ ++GD NIAPAA D CD A+N F R+
Sbjct: 119 KFAYKLKWIDALYDWLTEEMARYPKLALLGDYNIAPAATDVCDPCLWEARNLFSPDERAA 178
Query: 95 LVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
D FR E + AYT W GA + N G RIDHIL + P
Sbjct: 179 FARLCALGLTDAFRLFAQEEK-AYTWWDYRAGAFRRNAGLRIDHILLSAP 227
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNTG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 51 EFLLC--QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFR 107
E+LL Q + + + GDLN+A ID +A + + F R + GS F D FR
Sbjct: 128 EYLLGLDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGFVDAFR 187
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 167
K+PE AYT W + N G RID+ + + + D Q H CDI+
Sbjct: 188 YKYPEAEGAYTWWSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIH---------CDIM 238
>gi|66356394|ref|XP_625375.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226387|gb|EAK87392.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 500
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 61/216 (28%)
Query: 58 RRIFVVGDLNIAPAAID---------RCDAGP-------------DFAKNEFRIWFRSML 95
R + + GD NI ID C P FAK + ++
Sbjct: 238 RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCMLTSPKEIFETSSFAKAYMHMRRMNIE 297
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
+ G D +R +P YTCW + N GTRID L + + +
Sbjct: 298 MIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLISKGLISESI------ 351
Query: 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL--GEVPEI---P 210
+C+IL + GSDH P+ + L GE +
Sbjct: 352 -------KCEIL---------------------DHIYGSDHCPILLILKTGEFESLYNNE 383
Query: 211 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK 246
+ PS+ S+YLP + Q T+ L +V +G+
Sbjct: 384 KRKPPSICSKYLPQCKQRQSTISQFLTLSKVEVKGQ 419
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 112
L Q + + GDLN+A ID +A + + F RS + + F D FR HP+
Sbjct: 101 LDQNKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERSKMTQLLDAGFTDTFRYLHPD 160
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +AYT W + + N G RID+ L +
Sbjct: 161 RADAYTWWSNMPKVRERNIGWRIDYFLIS 189
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|302877288|ref|YP_003845852.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580077|gb|ADL54088.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 254
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR + V GD NIA ID + + + F R W + E G F DVFR
Sbjct: 136 LRASGREVIVCGDWNIAHKEIDLKNWRGNKKNSGFLPEERAWLTQLFDEVG--FVDVFRR 193
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDH 137
HPE EAYT W + A N G RID+
Sbjct: 194 VHPE-LEAYTWWSNRGQAWAKNVGWRIDY 221
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|167521904|ref|XP_001745290.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776248|gb|EDQ89868.1| predicted protein [Monosiga brevicollis MX1]
Length = 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + VVGDLN+A +D +AG K+ + R F L + F D FR +PE
Sbjct: 148 KPVLVVGDLNVAHLDLDIYNAG-HLVKSAGCTPQERTAFTEFLDQG---FTDTFRKLYPE 203
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
A+T W + TG Q + G R+D+ +C+ L L+
Sbjct: 204 HTGAFTYWSARTGGRQDSKGLRLDYAVCSNALLEANSPLR 243
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNVGWRIDYFLCSNP 223
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|114775670|ref|ZP_01451238.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
gi|114553781|gb|EAU56162.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
Length = 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 56 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
QGR + + GD+NIA ID R ++G F E R WF L F D+FR
Sbjct: 145 QGRELIICGDINIAHRNIDLKNWRGNRKNSG--FLPEE-RAWFDQCL---NAGFVDLFRQ 198
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+PER E Y+ W + A N G RID+ LC
Sbjct: 199 LYPER-EQYSWWSNRGQARANNVGWRIDYHLC 229
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|374341881|emb|CBX60083.1| DNA lyase, partial [Colletotrichum fragariae]
Length = 215
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 67/184 (36%), Gaps = 55/184 (29%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR-------SM 94
+++ R L+ QG+ + + GDLN+ D C+ K + W R S
Sbjct: 2 NALDVRVRNLVAQGKEVILTGDLNVIFEEADTCNLREMLRKEGMTVEDWKRMPSRRIYSQ 61
Query: 95 LVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
LV G D+ R HP R+ +TCW + N G+RID+ILC
Sbjct: 62 LVFGGNVTGARDEGREKPVLHDLTRIFHPTRQGMFTCWDTKRNTRPANNGSRIDYILCT- 120
Query: 143 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMC 202
P + F ++ E L GSDH PVY
Sbjct: 121 PGIKDW-------FTDSNIQEG--------------------------LMGSDHCPVYAT 147
Query: 203 LGEV 206
+G+V
Sbjct: 148 IGDV 151
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|426405404|ref|YP_007024375.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862072|gb|AFY03108.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 271
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 60/155 (38%), Gaps = 43/155 (27%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L GR+I VVGD N+A AID R F E R WF S V+ G F D FR
Sbjct: 153 LATGRQIVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRY 208
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 168
P + Y+ W A N G RID+I C L + ++ DIL
Sbjct: 209 FKPSEAKRYSWWDYRQMARISNRGWRIDYI-CISKGLEK------------YLASADIL- 254
Query: 169 DYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
++EGSDH PV L
Sbjct: 255 --------------------DQVEGSDHCPVVATL 269
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
Length = 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + + F + L+ +GR I + GD+N A ID P+ + F R W
Sbjct: 121 RLSYKMRFYDLFLDLMDRLVAEGRDIVICGDVNTAHKEIDLARPKPNEKISGFLPEERAW 180
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
L+E G F D FR HPE E Y+ W T A + N G RID+ +
Sbjct: 181 I-DRLIEHG--FLDTFRLFHPE-GEKYSFWDMKTRARERNVGWRIDYFFVS 227
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|374341883|emb|CBX60084.1| DNA lyase, partial [Colletotrichum fragariae]
Length = 215
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 65/184 (35%), Gaps = 55/184 (29%)
Query: 44 SSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR-------SM 94
+++ R L+ QG+ + + GDLN+ D C+ K + W R S
Sbjct: 2 NALDVRVRNLVAQGKEVILTGDLNVIFEEADTCNLREMLRKEGMTVEDWKRMPSRRIYSQ 61
Query: 95 LVESGGS------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
LV G D+ R HP R+ +TCW + N G+RID+ILC
Sbjct: 62 LVFGGNVTGARDEGREKPVLHDLTRIFHPTRQGMFTCWDTKRNTRPANNGSRIDYILCTS 121
Query: 143 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMC 202
F ++ E L GSDH PVY
Sbjct: 122 GI--------KDWFTDSNIQEG--------------------------LMGSDHCPVYAT 147
Query: 203 LGEV 206
+G+V
Sbjct: 148 IGDV 151
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|154291711|ref|XP_001546436.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
Length = 578
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 424 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 481
EK K DKE ++ VA W + L+ IP HKEPC++ + KK G GR F+
Sbjct: 480 EKTCKSRQDKEVHDPIVAKESWSK---LLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 536
Query: 482 VCARAEGPASNPEAN----CGYFKWA-FSKSK 508
+C R GP+ E N C F W+ SKS+
Sbjct: 537 MCPRPLGPSGQQEKNTEWRCNTFIWSTLSKSE 568
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+D+ R HP R+ +TCW A N+G+RID++LC+
Sbjct: 183 MWDISRGFHPTRKGMFTCWDQKMNARPGNFGSRIDYVLCS 222
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+
Sbjct: 139 VIICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 169
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 199 WWSYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|261416712|ref|YP_003250395.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791552|ref|YP_005822675.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373168|gb|ACX75913.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325662|gb|ADL24863.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 265
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L++ L F + + L G+ + VGD N ID + + F R W
Sbjct: 118 RLDYKLRFYDAFLENSKQWLADGKHVVTVGDYNTCHKEIDIARPKENENVSGFLPIERAW 177
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
VE+G F D FR+ HP+ R+AY+ W + GA + N G R+D+
Sbjct: 178 M-DKYVENG--FVDTFRTLHPDTRDAYSWWSNRFGARERNVGWRLDY 221
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|357402971|ref|YP_004914896.1| exodeoxyribonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386359051|ref|YP_006057297.1| exodeoxyribonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337769380|emb|CCB78093.1| putative exodeoxyribonuclease [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365809559|gb|AEW97775.1| exodeoxyribonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 266
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 55 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 110
GR + V GD NIAPA D + + K+ F R W + E+G + DV R+ H
Sbjct: 143 ADGREVLVCGDWNIAPAPADLKNWKANTEKSGFLPEERAWLARVFDEAG--YVDVVRALH 200
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
P Y+ W A + G RID ++CA P +
Sbjct: 201 PATEGPYSWWSYRGKAFDNDAGWRID-LVCASPGI 234
>gi|310794037|gb|EFQ29498.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 635
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 55/202 (27%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W---- 90
+F L + +++ R L+ G+++ + GDLN+ +D C+ K + W
Sbjct: 156 DFRLGYLNALDARVRNLVAAGKQVVLTGDLNVIREEMDTCNVREALRKEGMSVEEWMGMP 215
Query: 91 ----FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
F ++ + +D+ R HP R +TCW + N G+RI
Sbjct: 216 SRRLFNHLVFDGRVTGERDEGREAPVLYDLTRIFHPTRLGMFTCWETKRNMRPANNGSRI 275
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D+ILC+ K W G+ + L GSD
Sbjct: 276 DYILCSA--------------------------GIKDWFTGS--------DIQEGLMGSD 301
Query: 196 HAPVYMCLGEVPEIPQHSTPSL 217
H PVY L + ++ T L
Sbjct: 302 HCPVYANLADTVKVDGRDTSVL 323
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 503
+P C+ H EPC+ KKPG GR F++CAR G + E CG F W+
Sbjct: 575 VPRCE-HGEPCIILQTKKPGVNCGRSFYICARPLGQSGQKEKGTEWRCGTFIWS 627
>gi|19353217|gb|AAH24921.1| Nei like 3 (E. coli) [Mus musculus]
Length = 606
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H CV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 506 PLCKMHHRRCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 548
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
Q L S HK+ +H + + N+ ++++ L H S+ P+
Sbjct: 456 AQSKLFSSAHKKFKPAHTSATELK----SYNSGLSNSELQTNRTRGHHSKSDGSPL---- 507
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHK 461
C +H V V E KG++F EW + S P CK H
Sbjct: 508 CKMHHRRCVLRVV--RKDGENKGRQFYACSLPRGAQCGFFEW------ADLSFPFCK-HG 558
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ + + V K GP G+ FFVC + E C +F+WA
Sbjct: 559 KRSIMKTVLKIGPNNGKNFFVCPLEK------EKQCNFFQWA 594
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ AYT W A N G RID+ LC+ P
Sbjct: 192 NKERAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|377552391|gb|AFB69794.1| DNA lyase, partial [Aspergillus flavus]
Length = 162
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF----- 87
F F M R L+ G+R+FV GDLNI+ ID A K EF
Sbjct: 49 FRQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEGEFISAPA 108
Query: 88 RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 130
R F + LV SG + FD+ RS HP RR YTCW A N
Sbjct: 109 RRLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGN 162
>gi|405976356|gb|EKC40864.1| Endonuclease VIII-like 3 [Crassostrea gigas]
Length = 455
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 35/145 (24%)
Query: 369 DTSLNVNNSVTDTS--LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 426
D +NV S +SQ+ ++K+P+ C H S CS Q KK
Sbjct: 331 DVKMNVKAGAPTVSKKMSQDS---KGQGASKVPL----CPGH------SKPCSMTQTRKK 377
Query: 427 GKRFLD--------KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 478
G FL +W + P+C H +P R V K GP GR
Sbjct: 378 GDNFLRWFFSCGVYPRSKQCKFFQW------ADEKFPICPNHGKPAAFRTVMKEGPNNGR 431
Query: 479 RFFVCARAEGPASNPEANCGYFKWA 503
+FF C + + CG+F+WA
Sbjct: 432 KFFACPLPK------QKQCGFFEWA 450
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
+ +PLC GH +PC +K G F R FF C P S C +F+WA K
Sbjct: 357 SKVPLCPGHSKPCSMTQTRKKGDNFLRWFFSCGVY--PRSK---QCKFFQWADEK 406
>gi|22122759|ref|NP_666320.1| endonuclease 8-like 3 [Mus musculus]
gi|56404613|sp|Q8K203.1|NEIL3_MOUSE RecName: Full=Endonuclease 8-like 3; AltName: Full=DNA glycosylase
FPG2; AltName: Full=DNA glycosylase/AP lyase Neil3;
AltName: Full=Endonuclease VIII-like 3; AltName:
Full=Nei-like protein 3
gi|21961370|gb|AAH34753.1| Nei like 3 (E. coli) [Mus musculus]
gi|24475412|dbj|BAC22661.1| putative DNA glycosylase [Mus musculus]
gi|148703690|gb|EDL35637.1| nei like 3 (E. coli) [Mus musculus]
Length = 606
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H CV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 506 PLCKMHHRRCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 548
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
Q L S HK+ +H + + N+ ++++ L H S+ P+
Sbjct: 456 AQSKLFSSAHKKFKPAHTSATELK----SYNSGLSNSELQTNRTRGHHSKSDGSPL---- 507
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHK 461
C +H V V E KG++F EW + S P C+ H
Sbjct: 508 CKMHHRRCVLRVV--RKDGENKGRQFYACSLPRGAQCGFFEW------ADLSFPFCR-HG 558
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ + + V K GP G+ FFVC + + C +F+WA
Sbjct: 559 KRSIMKTVLKIGPNNGKNFFVCPLEK------KKQCNFFQWA 594
>gi|42524876|ref|NP_970256.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|39577087|emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 285
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 60/155 (38%), Gaps = 43/155 (27%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L GR++ VVGD N+A AID R F E R WF S V+ G F D FR
Sbjct: 167 LATGRQVVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRY 222
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 168
P + Y+ W A N G RID+I C L + ++ DIL
Sbjct: 223 FKPSEAKRYSWWDYRQMARISNRGWRIDYI-CVSKGLEK------------YLASADIL- 268
Query: 169 DYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
++EGSDH PV L
Sbjct: 269 --------------------DQVEGSDHCPVVATL 283
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + V GDLN+A ID R +AG F+ E R F ++L E F D +
Sbjct: 133 LVAHKGVLVCGDLNVAHTEIDLTNPQANRYNAG--FSDPE-RHAFSALLQEG---FIDTY 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +PE++EAYT W A + N G RID+ L +
Sbjct: 187 RHFYPEQKEAYTWWSYIGQARERNVGWRIDYFLAS 221
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 112
L + + + V GDLN+A ID +A + + F + R + + F D FR +P+
Sbjct: 133 LDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
R + Y+ W + N G RID+ L + + D + + CHV
Sbjct: 193 RTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNDG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|334132309|ref|ZP_08506067.1| Putative Nuclease [Methyloversatilis universalis FAM5]
gi|333442619|gb|EGK70588.1| Putative Nuclease [Methyloversatilis universalis FAM5]
Length = 260
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR I V GD NIA ID + + + F R W ++L E G + DV+R+
Sbjct: 136 LRASGREIVVCGDWNIAHQEIDLKNWKGNLKNSGFLPEERAWMTALLGEGG--WVDVYRT 193
Query: 109 KHPERRE-AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
HP+ E YT W + A N G RID+ + A P + K
Sbjct: 194 LHPDATEDCYTWWSNRGQARAKNVGWRIDYQI-ATPGIAAK 233
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 112
L + + + V GDLN+A ID +A + + F + R + + F D FR +P+
Sbjct: 133 LDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
R + Y+ W + N G RID+ L + + D + + CHV
Sbjct: 193 RTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---DAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|58584986|ref|YP_198559.1| exonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58419302|gb|AAW71317.1| Exonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 260
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R + LL I + GD N+AP ID D + F I R L
Sbjct: 121 FEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKL 180
Query: 96 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR HP ++ ++ W + + N G RIDH+L +
Sbjct: 181 KAILNLGFKDAFRMSHPNLQQ-FSWWRYQGNSLRNNQGMRIDHMLLS 226
>gi|296472464|tpg|DAA14579.1| TPA: endonuclease VIII-like 3 [Bos taurus]
Length = 606
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
L+ P C H PC RVV+K G GR F+ C A EA CG+F+WA
Sbjct: 500 LLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 525 ENKGRHFYACPLAREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 51 EFLLCQGRRIFVV--GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDV 105
E+LL R VV GDLN+A A +D +A + + F + R + L+ESG F D
Sbjct: 128 EYLLDLDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESG--FIDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +PER +A+T W N G RID+ + +
Sbjct: 186 FRYLYPERTDAFTWWSYMRDVRARNIGWRIDYFIVS 221
>gi|77735931|ref|NP_001029662.1| endonuclease 8-like 3 [Bos taurus]
gi|114152087|sp|Q3MHN7.1|NEIL3_BOVIN RecName: Full=Endonuclease 8-like 3; AltName: Full=DNA
glycosylase/AP lyase Neil3; AltName: Full=Endonuclease
VIII-like 3; AltName: Full=Nei-like protein 3
gi|75775280|gb|AAI05169.1| Nei endonuclease VIII-like 3 (E. coli) [Bos taurus]
Length = 606
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
L+ P C H PC RVV+K G GR F+ C A EA CG+F+WA
Sbjct: 500 LLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 525 ENKGRHFYACPLAREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERREA 116
+ V GDLN+A ID +A + + F R L+ESG F D FR HPER +A
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESG--FIDTFRHLHPERDDA 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAG 142
++ W + N G RID+ L +
Sbjct: 197 FSWWSFMPKVRERNIGWRIDYFLASA 222
>gi|401626731|gb|EJS44656.1| apn2p [Saccharomyces arboricola H-6]
Length = 524
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H E C+ + K P G++F++C R+ G + N E++CG+F+W
Sbjct: 478 PLCK-HGEQCILKTSKTPSNP-GKKFWICNRSRGDSGNTESSCGFFQWV 524
>gi|372279172|ref|ZP_09515208.1| exodeoxyribonuclease III [Oceanicola sp. S124]
Length = 269
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRS 93
+ L + + R E LL Q ++GD NI P A D + G + E R ++
Sbjct: 132 YKLGWMERLKTRAEALLAQEEPAVMLGDYNIIPQAQDAANPKKWEGDALYRPESRAAWQR 191
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144
+L F ++FR++H YT W GA Q N G RIDH+L C
Sbjct: 192 IL---NLGFTEIFRTRHAAPGH-YTFWDYQAGAWQKNDGIRIDHMLMTPQC 238
>gi|354546880|emb|CCE43612.1| hypothetical protein CPAR2_212560 [Candida parapsilosis]
Length = 481
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 39/146 (26%)
Query: 37 EFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAK--------N 85
EF L F + R L +G+ + ++GD+N+ ID + + AK N
Sbjct: 191 EFRLQFLQQLMKRCHNLKFNEGKDVIIMGDINVCLDLIDSAEGINERIMAKQITDVSDGN 250
Query: 86 EFRIW----------------------FRSMLVE------SGGSFFDVFRSKHPERREAY 117
+F + RSM+ E + +D R RR+ Y
Sbjct: 251 QFEVANYDECCKFKQSKRARELMNEYVIRSMIQECTSQTLTNQFLYDTTRYIQGRRRKMY 310
Query: 118 TCWPSNTGAEQFNYGTRIDHILCAGP 143
T W + T + Q NYG+RID ILC+ P
Sbjct: 311 TVWNTLTNSRQVNYGSRIDLILCSSP 336
>gi|339482626|ref|YP_004694412.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
gi|338804771|gb|AEJ01013.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
Length = 257
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 53 LLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L+ GR I + GD NIA ID R + E R+W ++L + G F DVFR
Sbjct: 136 LMASGREIILCGDWNIAHKEIDLKNWRSNQKNSGFLPEERMWLSNVLDDVG--FVDVFRQ 193
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+PE + YT W + A N G RID+ A P + QK
Sbjct: 194 LNPE-PDQYTWWSNRGQAWTKNVGWRIDY-QVATPVIAQK 231
>gi|440913159|gb|ELR62644.1| Endonuclease 8-like 3, partial [Bos grunniens mutus]
Length = 590
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
L+ P C H PC RVV+K G GR F+ C A EA CG+F+WA
Sbjct: 484 LLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFFEWA 532
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 509 ENKGRHFYACPLAREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 560
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 561 FFVCPLGK------EKQCNFFQWA 578
>gi|83311632|ref|YP_421896.1| exonuclease III [Magnetospirillum magneticum AMB-1]
gi|82946473|dbj|BAE51337.1| Exonuclease III [Magnetospirillum magneticum AMB-1]
Length = 440
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+ ++ L++ + + + LL QG + GD NI P D R DA + +
Sbjct: 300 KFDYKLAWMARLRTHAQALLAQGIPFVLGGDFNICPTDDDVYDPPKWRDDA---LCRPDS 356
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC---AGPC 144
R +RS +V G + FR+ HP + Y+ W GA Q + G RIDH L A C
Sbjct: 357 RAAWRS-IVNLG--LTEAFRALHPGEKGRYSFWDYQAGAWQRDEGLRIDHFLLSPQAADC 413
Query: 145 LH 146
LH
Sbjct: 414 LH 415
>gi|410914311|ref|XP_003970631.1| PREDICTED: endonuclease 8-like 3-like isoform 1 [Takifugu rubripes]
Length = 555
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 18/90 (20%)
Query: 420 HDQDEKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
H Q E KG+RF L +E N EW + + P C H + C+ R V K GP
Sbjct: 470 HKQGENKGRRFYACSLPRE-NKCNFFEW------ADMNFPFCH-HGKRCLMRTVLKLGPN 521
Query: 476 FGRRFFVCARAEGPASNPEANCGYFKWAFS 505
GR FF C+ +G C +F+WA S
Sbjct: 522 NGRNFFTCSFQKG------KQCDFFQWAHS 545
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + + GDLN+A ID + + F +E + + S L+E+G F D FR
Sbjct: 136 LTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRY 191
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
+P++++AY+ W + + N G RID+ L + ++ D + H
Sbjct: 192 LYPDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 114
+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 136 KAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQE 193
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AYT W + N G RID+ + +
Sbjct: 194 GAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + + GDLN+A ID + + F +E + + S L+E+G F D FR
Sbjct: 136 LTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRY 191
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
+P++++AY+ W + + N G RID+ L + ++ D + H
Sbjct: 192 LYPDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID +A + + F + R + + F D FR +P+R + Y+
Sbjct: 139 VIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLLAAGFIDSFRFFYPDRTDVYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
W + N G RID+ L + + D + + CHV
Sbjct: 199 WWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAE----IDCHV 237
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ GDLN+A ID C+ ++ + F R + L++SG F D FR HP + A
Sbjct: 125 VIYCGDLNVAHEEIDICNVKSNYGNSGFTKEERAKMTRLLDSG--FIDTFRYLHPNQEGA 182
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCA 141
YT W N G RID++L +
Sbjct: 183 YTWWSYMRDVRARNIGWRIDYLLIS 207
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 47/149 (31%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID R +AG F E +ML++SG F D FR +P+
Sbjct: 139 VIICGDLNVAHREIDIKNPEANRRNAG--FTDEEREK--MTMLIQSG--FTDSFRYLYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
+ +AYT W A + N G RID+ L + + D
Sbjct: 193 KTDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRD---------------------- 230
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
GM + + GSDH PV++
Sbjct: 231 ------------AGMYSEIYGSDHCPVFL 247
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES--GGSFFDVFRSKHP 111
L Q + + V GDLN+APA ID + F R+ + G F D FR+++P
Sbjct: 253 LEQHKPVVVTGDLNVAPAEIDIHSPKTNLKSAGFTPQERASFAANLLGQGFVDCFRTQYP 312
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
E AYT W A N G R+DH L + HD
Sbjct: 313 E-AVAYTYWGYRFNARGNNKGWRLDHFLVSQQLHSSLHD 350
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID +A ++ F R + + G F D FR +P+R + Y+
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTDVYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 169
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 199 WWSYMPKVRERNIGWRIDYFLVS----DRLRPLLIDASIDCHITGSDHCPVILD 248
>gi|383791011|ref|YP_005475585.1| exodeoxyribonuclease III [Spirochaeta africana DSM 8902]
gi|383107545|gb|AFG37878.1| exodeoxyribonuclease III [Spirochaeta africana DSM 8902]
Length = 260
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRI 89
+L++ L+F ++M + GR + + GD NIA ID R P + E R
Sbjct: 124 RLDYKLAFCAAMLDICNEITASGRNLVLCGDYNIAHTPIDLANPERNTENPGYLPEE-RA 182
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
W S L + D FR P+ YT W GA + N G RID+ C P L +
Sbjct: 183 WMDSFL---AAGYIDTFRLFTPDGGH-YTWWSYRFGARERNIGWRIDY-HCVNPSLRDR 236
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 125 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 178
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 179 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 125 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFSELL---NAGFIDTFRYFYPN 178
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 179 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|351713237|gb|EHB16156.1| Endonuclease VIII-like 3 [Heterocephalus glaber]
Length = 606
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GRRF+ C EA CG+FKWA
Sbjct: 506 PRCSKHSRLCVVRVVRKDGENKGRRFYACPLPR------EAQCGFFKWA 548
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+RF L +E +W + S P C H + + R V K GP G+
Sbjct: 525 ENKGRRFYACPLPREAQ-CGFFKW------ADLSFPFC-NHGKRSIMRTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPFEK------EKQCNFFQWA 594
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 114
+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 136 KAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQE 193
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AYT W + N G RID+ + +
Sbjct: 194 GAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 125 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 178
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 179 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPE 112
L + + + + GDLN+A ID +A + F R L E S F D FR +P+
Sbjct: 133 LDEKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGKLTELLASGFLDSFRELYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
AYT W A Q N G RID+ L +
Sbjct: 193 LTGAYTWWSYMFKARQNNAGWRIDYFLIS 221
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|224159467|ref|XP_002199909.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like, partial
[Taeniopygia guttata]
Length = 235
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 26 TGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGP 80
LE +R+ F L F + R LLC GDLN+A A ID C A P
Sbjct: 98 VALEPRLRLDAAF-LQFLRRLDARKPVLLC--------GDLNVAHADIDLCHPRANRASP 148
Query: 81 DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
F E R F +L F D FR +P R A+T W GA N G R+D+ +
Sbjct: 149 GFTPQE-RDGFSRLL---AAGFVDSFRHLYPAARGAFTFWTYLGGARARNVGWRLDYAVV 204
Query: 141 AGPCLHQKHDLQSHNFV 157
+ L D + N V
Sbjct: 205 SQRLLGALCDSKIRNTV 221
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 50/153 (32%)
Query: 60 IFVVGDLNIAPAAIDRCD--------AG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
+ VGDLN+A ID + AG D +N+F + L+++G F DVFR +
Sbjct: 201 VVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQERNDF-----TRLLDAG--FVDVFRRLN 253
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
P++ AYT W + A + N G R+D+ + + +++ V +CDIL
Sbjct: 254 PDKEGAYTFWSNMHNAREKNVGWRLDYFVVSERIMNK-------------VKKCDIL--- 297
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
++GSDH P+ + +
Sbjct: 298 ------------------HSIKGSDHCPLSLTI 312
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|84500937|ref|ZP_00999172.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
gi|84391004|gb|EAQ03422.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
Length = 260
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID--RCDAGPDFA--KNEFRIW 90
+ ++ L++ + R L+ Q + GD NI P D R DA D A + + R
Sbjct: 120 KYDYKLAWMERLRERARQLIAQEEPALMAGDYNIIPQPEDVARPDAWRDDALFRLDSRDA 179
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+R +L F + FR++HP Y+ W GA Q N G RIDHIL C D
Sbjct: 180 YRRVL---NLGFTEAFRTRHPAPGH-YSFWDYQAGAWQRNNGIRIDHILMTPQCADLMQD 235
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|225024988|ref|ZP_03714180.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
gi|224942218|gb|EEG23427.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----R 88
R QL+F F ++ Y L QGR I + GD NIA ID + + + F R
Sbjct: 118 RQQLKFR--FLAAFYPMLRELKTQGRDIVICGDWNIAHQNIDLKNWKGNLKNSGFLPEER 175
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
W ++VE G + D++R+ +PE YT W A + G RID+ + A P L ++
Sbjct: 176 EWIGKVIVELG--WVDIWRTLYPE-MPGYTWWSQRGQAYAKDVGWRIDYQM-ATPALAER 231
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFSELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 125 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFSELL---NAGFIDTFRYFYPN 178
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 179 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 209
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|302761444|ref|XP_002964144.1| hypothetical protein SELMODRAFT_405853 [Selaginella moellendorffii]
gi|300167873|gb|EFJ34477.1| hypothetical protein SELMODRAFT_405853 [Selaginella moellendorffii]
Length = 330
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN 85
+F L F + + R E +L +GRRI +VG LNI+P ID CD F N
Sbjct: 281 DFKLKFETVLQCRLESILKRGRRIIIVGHLNISPYPIDSCDTDQKFDTN 329
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + + GDLN+A ID + P F E R F +L E+G F D FR
Sbjct: 134 LNKEKPVIICGDLNVAHTEIDLKNPKTNRRNPGFTDEE-REKFTELL-EAG--FTDTFRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
K+P++ AYT W A + N G RID+ L + + D +
Sbjct: 190 KYPDKEGAYTWWSYRFNARKNNAGWRIDYFLVSNDVKDKIEDAK 233
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 137 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYP 189
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 190 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 221
>gi|114778638|ref|ZP_01453454.1| exodeoxyribonuclease III xth [Mariprofundus ferrooxydans PV-1]
gi|114551103|gb|EAU53664.1| exodeoxyribonuclease III xth [Mariprofundus ferrooxydans PV-1]
Length = 252
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 49 RWEFLLC--------QGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLV 96
RW LC Q R+ ++GD NIAPA ID D G R +F S L+
Sbjct: 121 RWLQALCDFLQEELKQHDRLVLLGDFNIAPADIDVHDPTRWQGKILCSEPEREFF-STLL 179
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+ G D RS HPE +E ++ W A + +G RIDH+L
Sbjct: 180 QLG--LIDGVRSLHPE-KEMFSWWDYRMSAYRRGWGVRIDHLLV 220
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 9 RDGVLLQIMVILFYSMC-----TGLELI-VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFV 62
+DG LL FY +C G +L+ + +L +N F Y R L + + +
Sbjct: 442 QDGRLLTAEYEKFYLVCVYVPNAGRKLVTLPKRLRWNEKFH--QYLR---DLDAKKPVIL 496
Query: 63 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--SGGSFFDVFRSKHPERREAYTCW 120
GD+N+A ID + + F R + E S G F D FR +P+R AYT W
Sbjct: 497 CGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTELLSYG-FVDTFRKLYPDRTGAYTFW 555
Query: 121 PSNTGAEQFNYGTRIDHILCA 141
GA N G R+D+ + +
Sbjct: 556 TYMGGARAKNVGWRLDYFITS 576
>gi|71905765|ref|YP_283352.1| AP endonuclease [Dechloromonas aromatica RCB]
gi|71845386|gb|AAZ44882.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Dechloromonas aromatica RCB]
Length = 259
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L +GR I + GD NIA AID + + + F R W + E G + DV+R
Sbjct: 137 LRAEGREIVLCGDWNIAHQAIDLKNWKSNQKNSGFLPEERAWLSRLFEEQG--WVDVYRR 194
Query: 109 KHPERREA-YTCWPSNTGAEQFNYGTRIDH 137
HPE +A YT W + A N G RID+
Sbjct: 195 LHPETTDACYTWWSNRGQAWAKNVGWRIDY 224
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 50/153 (32%)
Query: 60 IFVVGDLNIAPAAIDRCD--------AG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
+ VGDLN+A ID + AG D +N+F + L+++G F DVFR +
Sbjct: 201 VVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQERNDF-----TRLLDAG--FVDVFRRLN 253
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
P++ AYT W + A + N G R+D+ + + +++ V +CDIL
Sbjct: 254 PDKEGAYTFWSNMHNAREKNVGWRLDYFVVSERIMNK-------------VKKCDIL--- 297
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
++GSDH P+ + +
Sbjct: 298 ------------------HSIKGSDHCPLSLTI 312
>gi|39722391|emb|CAE84424.1| DNA lyase [Yarrowia lipolytica]
Length = 412
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 70/190 (36%)
Query: 49 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF-- 106
R L+ GR + V+GDLN+A D + K + I ++ + G F +VF
Sbjct: 15 RVNLLVEAGREVVVMGDLNVARELYDSAEGMQALHKAK-HITLPTLGDKEEGRFVEVFEK 73
Query: 107 -------------------------------RSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R+KHP R + YTCW N+G+RI
Sbjct: 74 LNPGQCKSWREAKVGRRVFHRLVPDLLQDSCRNKHPNRPDMYTCWNVMMNYRPGNFGSRI 133
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++L + V + DIL LEGSD
Sbjct: 134 DYVLASK---------------GLKVEDADIL---------------------PHLEGSD 157
Query: 196 HAPVYMCLGE 205
H PVY + E
Sbjct: 158 HCPVYAEVRE 167
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 21/79 (26%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR---------------- 485
+W +I + + P+C H P V R +K GP G+ F+VC +
Sbjct: 336 QWSKI--MTKKPAPVC-AHNLPAVLRTTRKKGPNQGKHFWVCGQNHSLQLVGDSYKASAD 392
Query: 486 --AEGPASNPEANCGYFKW 502
A+G + A C +F+W
Sbjct: 393 PDAKGSQDDTSARCNFFQW 411
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 132 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFSELL---NAGFIDTFRYFYPN 185
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 186 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 216
>gi|319956878|ref|YP_004168141.1| exodeoxyribonuclease iii [Nitratifractor salsuginis DSM 16511]
gi|319419282|gb|ADV46392.1| exodeoxyribonuclease III [Nitratifractor salsuginis DSM 16511]
Length = 258
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + L F + E L +G I GD+N A ID + + F R W
Sbjct: 121 RLAYKLEFYDRFFEHIEGLRKKGMSIIFCGDVNTAHRPIDLARPKENEGISGFLPVERAW 180
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
L+E G + D FR H + E Y+ W T A + N G RID+ + D
Sbjct: 181 I-DKLIEHG--YIDTFRYIHGDEPERYSWWSMRTKARERNVGWRIDYFFVS-------KD 230
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
L+ + + DIL +EGSDHAPV + L +
Sbjct: 231 LKE------RILDADIL---------------------AEIEGSDHAPVSLRLAK 258
>gi|50548171|ref|XP_501555.1| YALI0C07436p [Yarrowia lipolytica]
gi|49647422|emb|CAG81858.1| YALI0C07436p [Yarrowia lipolytica CLIB122]
Length = 582
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 63/185 (34%), Gaps = 70/185 (37%)
Query: 49 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF-- 106
R L+ GR + V+GDLN+A D + K + I ++ + G F +VF
Sbjct: 185 RVNLLVEAGREVVVMGDLNVARELYDSAEGMQALHKAK-HITLPTLGDKEEGRFVEVFEK 243
Query: 107 -------------------------------RSKHPERREAYTCWPSNTGAEQFNYGTRI 135
R+KHP R + YTCW N+G+RI
Sbjct: 244 LNPGQCKSWREAKVGRRVFHRLVPDLLQDSCRNKHPNRPDMYTCWNVMMNYRPGNFGSRI 303
Query: 136 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 195
D++L + V + DIL LEGSD
Sbjct: 304 DYVLASK---------------GLKVEDADIL---------------------PHLEGSD 327
Query: 196 HAPVY 200
H PVY
Sbjct: 328 HCPVY 332
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 21/79 (26%)
Query: 442 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR---------------- 485
+W +I + + P+C H P V R +K GP G+ F+VC +
Sbjct: 506 QWSKI--MTKKPAPVC-AHNLPAVLRTTRKKGPNQGKHFWVCGQNHSLQLVGDSYKASAD 562
Query: 486 --AEGPASNPEANCGYFKW 502
A+G + A C +F+W
Sbjct: 563 PDAKGSQDDTSARCNFFQW 581
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 35/145 (24%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID + GP+ F R L E F D FR HP+ Y+
Sbjct: 139 VILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGFTDTFRHLHPDATGIYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 178
W A + N G RID+ L + N + + + DIL+D
Sbjct: 199 WWSMRFRARERNAGWRIDYFLVS-------------NRLAPQIRKADILMD--------- 236
Query: 179 PSYRWKGGMSTRLEGSDHAPVYMCL 203
+ GSDH PV + L
Sbjct: 237 ------------ILGSDHCPVTLEL 249
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFSELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSDP 223
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 49 RWE-----FLLCQGRR--IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVES 98
RWE +LL R + V GD+N+A ID + + F R + L+E+
Sbjct: 121 RWEDAFRAYLLTLNRDKPVVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQKMTDLLEA 180
Query: 99 GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G F D FR+ +PE+++AYT W A + N G RID+ L + Q D
Sbjct: 181 G--FIDTFRALYPEQKDAYTWWSYMRKARERNAGWRIDYFLVSDRLRGQVED 230
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L Q + + V GDLN+A ID R +AG D + +F+ +L+++G F D
Sbjct: 134 LDQSKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG--FIDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
FR +PE+ Y+ W A + N G RID+ L + + + + H
Sbjct: 187 FRYFYPEQTNIYSWWSYRFKAREKNAGWRIDYFLASASLADKLKEAKIH 235
>gi|330920551|ref|XP_003299056.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
gi|311327471|gb|EFQ92889.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
Length = 634
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNEF 87
F L F +++ R L G+ + + GDLN++ ID A ++
Sbjct: 170 FRLGFLTALETRIRNLTKMGKNVILTGDLNVSRDLIDTAKAEDNMRAEGMTHAEYLSTPN 229
Query: 88 RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L+ +D+ R HP+R +T W A N+G+RID
Sbjct: 230 RRIFNQLLLNGNVPGERDQGREEPVLYDLCREFHPDREGMFTHWEQKINARPGNFGSRID 289
Query: 137 HILCA 141
ILC+
Sbjct: 290 FILCS 294
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
P C+ H EPC KK G FGR F+VC R GP+ E C F W
Sbjct: 577 PRCE-HGEPCTLYKTKKKGQNFGREFWVCPRPIGPSGVKETGTQWRCPTFTW 627
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ + GD N+A ID + GP+ F R + L+++G F D FR HP+ A
Sbjct: 173 VVMCGDFNVAHQEIDLKNPGPNRGNAGFSDEEREKFTRLLDAG--FVDTFRVLHPDEAGA 230
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
Y+ W A + N G RID+ L + HD + H
Sbjct: 231 YSWWSYRFNARKNNAGWRIDYFLVSESLRDAIHDARMH 268
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERR 114
+ + + GD N+A ID + GP+ K F R L+E+G F D FR HP+
Sbjct: 171 KPVVMCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEAG--FVDTFRRLHPDVT 228
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A Q N G RID+ L +
Sbjct: 229 GAYSWWSYRFKARQNNAGWRIDYFLVS 255
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNDG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 109
L + + + V GDLN+A ID + + F R F+ L F D FRS
Sbjct: 133 LARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQFLDHG---FVDSFRSL 189
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 169
+P++ AYT W A + N G RID+ L + + D+ HN V + C + ++
Sbjct: 190 YPDKEGAYTWWSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVMGS-DHCPVELE 248
Query: 170 YK 171
+K
Sbjct: 249 WK 250
>gi|42520813|ref|NP_966728.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410553|gb|AAS14662.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 259
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R LL + GD NIAP ID D+ + F I R L
Sbjct: 121 FEYKLKFFDNLYERMSTLLKNEELTIIAGDYNIAPDEIDVFDSNLLNGQVCFHIREREKL 180
Query: 96 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR HP ++ +T W + + N G RID++L +
Sbjct: 181 RAILNLGFKDAFRISHPNLQQ-FTWWHYQGNSLRNNQGMRIDYMLLS 226
>gi|209964343|ref|YP_002297258.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
gi|209957809|gb|ACI98445.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
Length = 257
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
LL + + GD N+ PA D D +G + E R FR +L + FR+
Sbjct: 134 LLAREVPFVLGGDYNVIPAPEDVYDPEGWSGDALFRRETREKFREIL---NLGLTEAFRA 190
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
HP R AYT W GA + G RIDH L +
Sbjct: 191 LHPAARHAYTFWDYQAGAWPRDLGLRIDHFLLS 223
>gi|114707219|ref|ZP_01440117.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114537415|gb|EAU40541.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS- 93
+ E+ L++ + E LL R+ + GD N+ P D D F+ R
Sbjct: 120 KFEYKLAWMDRLERHAEALLAHEERLILAGDYNVIPQPKDVHDPAAWLNDALFQPESRGN 179
Query: 94 --MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
LV G F D R +R E YT W GA Q N G RIDH+L +
Sbjct: 180 LRRLVHLG--FADALRMTD-DRAELYTFWDYQAGAWQKNNGIRIDHLLLS 226
>gi|99035972|ref|ZP_01315016.1| hypothetical protein Wendoof_01000152 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 259
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R LL + GD NIAP ID D+ + F I R L
Sbjct: 121 FEYKLKFFDNLYERMSTLLKNEELTIIAGDYNIAPDEIDVFDSNLLNGQVCFHIREREKL 180
Query: 96 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR HP ++ +T W + + N G RID++L +
Sbjct: 181 RAILNLGFKDAFRISHPNLQQ-FTWWHYQGNSLRNNQGMRIDYMLLS 226
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-SMLVESGGSFFDVFRSKHPE 112
L + + + GDLN+A ID + P+ F I R +M F D FR + +
Sbjct: 133 LATKKPVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTALLARGFTDTFRHIYLD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ AY+ W A N G RID+ +C+ L Q D Q
Sbjct: 193 KTGAYSWWSYRFNARARNAGWRIDYFICSNALLPQVKDSQ 232
>gi|426256516|ref|XP_004021886.1| PREDICTED: endonuclease 8-like 3 [Ovis aries]
Length = 696
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+L+ P C H PC RVV+K G GR F+ C EA CG+F+WA
Sbjct: 589 RLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLPR------EAQCGFFEWA 638
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 615 ENKGRHFYACPLPREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 666
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 667 FFVCPLGK------EKQCNFFQWA 684
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + V GDLN+A ID R +AG F E S+L++SG F D +
Sbjct: 133 LEQYKPVIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FIDSY 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL---CAGPCLHQKH 149
R +P++ AYT W A Q N G RID+ L C L + H
Sbjct: 187 RYFYPDKEHAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAH 232
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSHP 223
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 40/172 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-- 92
+L+F L++ M+ + L + + + V GDLN+A ID +A + + F R
Sbjct: 116 RLDFRLAWEE-MFRGYLIKLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREK 174
Query: 93 -SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
+ L+++G F D FR +P+R +AYT W + N G RID+ L +
Sbjct: 175 MTRLLDAG--FIDSFRYLYPDRTDAYTWWSFMPKIRERNVGWRIDYFLASARL------- 225
Query: 152 QSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
AP+ + G+ +++ GSDH PV + L
Sbjct: 226 --------------------------APAIV-EAGIDSQILGSDHCPVVLTL 250
>gi|420496775|ref|ZP_14995336.1| exodeoxyribonuclease III family protein [Helicobacter pylori Hp
P-25]
gi|393114472|gb|EJC14987.1| exodeoxyribonuclease III family protein [Helicobacter pylori Hp
P-25]
Length = 116
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 5 VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYP 57
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ +AYT W A + G RID+ LC+ P
Sbjct: 58 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 89
>gi|311272274|ref|XP_001926185.2| PREDICTED: endonuclease 8-like 3 [Sus scrofa]
Length = 596
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H PC+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 496 PRCSKHGRPCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 538
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + R V K GP G+
Sbjct: 515 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 566
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 567 FFVCPLGK------EKQCNFFQWA 584
>gi|407893404|ref|ZP_11152434.1| exodeoxyribonuclease III [Diplorickettsia massiliensis 20B]
Length = 261
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
L R + VVGD NIAP D D AG R F+ L++ G D FR
Sbjct: 138 LATQRSVIVVGDFNIAPEDRDVYDPSRWAGHVLVSQPERQAFQQ-LIDLG--LVDTFRLF 194
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
HPE Y+ W A + N+G RIDHIL
Sbjct: 195 HPEANH-YSWWDYRAAAFRRNHGLRIDHIL 223
>gi|337288259|ref|YP_004627731.1| exodeoxyribonuclease III [Thermodesulfobacterium sp. OPB45]
gi|334901997|gb|AEH22803.1| exodeoxyribonuclease III [Thermodesulfobacterium geofontis OPF15]
Length = 267
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPER 113
+ ++GD N+AP ID D P+ + R F+++L G D R K+PE+
Sbjct: 151 LIIMGDFNVAPEEIDVYD--PEILRESICFTERERKAFKALL---GFGLVDALRLKYPEK 205
Query: 114 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
+T W A N G R+DHIL + +
Sbjct: 206 SGIFTWWDYQFSAFNKNQGMRLDHILITSVLIDK 239
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 15 QIMVILFYSMCTGLELI-VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAI 73
+ VI Y G +L+ + +LE+N F + L Q + + + GD+N+A I
Sbjct: 203 EFFVINVYVPNAGQKLVTLPKRLEWNKLFKKHIEE-----LDQKKPVIICGDMNVAHQEI 257
Query: 74 DRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 132
D + + F R+ + + F D FRS +PE AYT W A N G
Sbjct: 258 DLKNPKTNTKNAGFTKEERNDMTDFLAAGFIDTFRSLYPEIEGAYTFWSYFANARSKNIG 317
Query: 133 TRIDHILCA 141
R+D+ L +
Sbjct: 318 WRLDYFLIS 326
>gi|21674945|ref|NP_663010.1| AP Xth family endonuclease [Chlorobium tepidum TLS]
gi|21648175|gb|AAM73352.1| AP (apurinic or apyrimidinic) endonuclease, xth family [Chlorobium
tepidum TLS]
Length = 253
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 53 LLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
LL +GR + ++GD+N+A ID + G + E R + L G D+ R
Sbjct: 134 LLTEGREVILLGDINVALRDIDVHRSQNKPGAIGLRPEERAAIEAHL---GLGLLDIVRE 190
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+P++++ +T WP+ A + N G RID I P L +K
Sbjct: 191 LNPDKKDLFTWWPNWKFARERNLGWRIDCIYLT-PALARK 229
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ + GDLN+A ID +A ++ F R S L+ +G F D FR +P+R +
Sbjct: 139 VIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAG--FIDTFRYFYPDRTDV 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 169
Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 197 YSWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + + + V GDLN+A ID + + F I R S L++SG F D FR +
Sbjct: 133 LNETKPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTLLDSG--FIDTFRFFY 190
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
PE AY+ W A + N G RID+ L + D + H
Sbjct: 191 PELEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIH 234
>gi|103487661|ref|YP_617222.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
gi|98977738|gb|ABF53889.1| Exodeoxyribonuclease III [Sphingopyxis alaskensis RB2256]
Length = 256
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFR-I 89
+ ++ L + + + R LL + GD N+ P D R A + E R
Sbjct: 117 KFDYKLRWMARLRERARMLLAAEIPTVLAGDYNVIPHDDDVWDPRAMATDALMQPESRDA 176
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
WFR + G + D RS+HP +T W GA Q ++G RIDH+L + P L +
Sbjct: 177 WFRLL----GDGWTDALRSRHPAG-HVWTYWDYQAGAWQRDHGFRIDHLLLS-PALADR 229
>gi|291612503|ref|YP_003522660.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
gi|291582615|gb|ADE10273.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
Length = 288
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 57 GRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
GR + V GD NIA D R + E R W +L E G F DVFR HPE
Sbjct: 173 GRDVIVCGDWNIAHTEKDLRNWRGNKKNSGFLPEERAWLTELLGEVG--FVDVFRKLHPE 230
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 171
EAYT W + A + G RID+ + A P + K + +++DYK
Sbjct: 231 -LEAYTWWSNRGQAWAKDVGWRIDYQI-ATPGMAAKAVSTGIYKEQRFSDHAPLMVDYK 287
>gi|160774311|gb|AAI55158.1| Neil3 protein [Danio rerio]
Length = 568
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 437 NVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 493
N+ + R QQ + S+P CK H PC RVV K G GR+F+ C+
Sbjct: 447 NMKHISSRTTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGENKGRQFYTCSLPR------ 500
Query: 494 EANCGYFKWA 503
E C +F+WA
Sbjct: 501 ETQCNFFEWA 510
>gi|269958811|ref|YP_003328599.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848641|gb|ACZ49285.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
Length = 295
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
+ L+F S+ R LL I V GD N+AP +D DA K F R R+
Sbjct: 145 YKLNFLRSLKARMLKLLEGEEWIVVGGDYNVAPECMDVYDAQALDGKLCFHPEERARLRA 204
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR H ++E ++ W G+ Q N G RIDHIL +
Sbjct: 205 ILY---SGFTDAFRVLHGGKQE-FSWWNYREGSWQRNRGMRIDHILLS 248
>gi|333994968|ref|YP_004527581.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
gi|333734315|gb|AEF80264.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
Length = 259
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFR 88
+L++ L F ++ + + QGR + GD NIA ID A P + E R
Sbjct: 122 RLDYKLRFCDAIMKLCKKFVTQGRHFVLCGDYNIAHTPIDL--AHPKANEENAGYLPEER 179
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
W M + F D FR +P +++ YT W A + N G RID+ C P
Sbjct: 180 AW---MDAYTKAGFVDTFRHFYPGKKDQYTWWSYRMNARERNVGWRIDY-HCVDPAF 232
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRI 89
+L+F F+ + +Y + L Q + I GDLN+A ID + P F E R
Sbjct: 116 RLDFRHGFNEA-FYEYVNQLSQQKSIVWCGDLNVAHQEIDLKNPQSNHHHPGFTDEE-RF 173
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
F S L++SG F D FR +P++ +Y+ W A Q N G RID+ + + Q
Sbjct: 174 DF-SKLLKSG--FTDTFRYFYPDQEHSYSWWSYRFHARQRNAGWRIDYFVASADLDSQLV 230
Query: 150 DLQSHN 155
D + H+
Sbjct: 231 DAKIHD 236
>gi|268569472|ref|XP_002640531.1| C. briggsae CBR-EXO-3 protein [Caenorhabditis briggsae]
Length = 290
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 50/165 (30%)
Query: 49 RWEFLLCQGRR-------IFVVGDLNIAPAAIDRCDAGPDFAK-----NEFRIWFRSMLV 96
RWE LL + + + GDLN+A ID + + K ++ R WF ML
Sbjct: 160 RWEALLTEKLKSMTMTKPVIYGGDLNVAHEEIDLKNPESNRNKTAGFTDQERGWFTEML- 218
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 156
E G F D FR HPE ++ YT W A + + G R+D+ + + + +
Sbjct: 219 EMG--FTDTFRKMHPEEKK-YTFWSYLANAREKDVGWRLDYYVVSDRIMEK--------- 266
Query: 157 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
V + +I+ D K GSDHAP+ +
Sbjct: 267 ----VKKSEIMSDVK---------------------GSDHAPIVL 286
>gi|448513794|ref|XP_003867011.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
gi|380351349|emb|CCG21573.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
Length = 473
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 61/188 (32%)
Query: 37 EFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI---- 89
EF L F + R L QG+ + ++GD+N+ ID + D AK I
Sbjct: 191 EFRLRFLQQLLKRCHNLKFKQGKDVIIMGDINVCLDLIDSAEGINDRLVAKQITDISDGC 250
Query: 90 --------------------------WFRSMLVE-----SGGSF-FDVFRSKHPERREAY 117
RSM+ E SG F +D R R++ Y
Sbjct: 251 SFELANYNECCKFKQSRRARELMNAYVIRSMVQERIDATSGDQFLYDTTRYIQGRRKKMY 310
Query: 118 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE-----------CDI 166
T W + T + Q NYG+RID ILC+ S + + C N C +
Sbjct: 311 TVWNTLTSSRQVNYGSRIDLILCS-----------SQDMLKCVSNADIWPFILGSDHCPV 359
Query: 167 LIDYKRWK 174
D+ WK
Sbjct: 360 FTDFDPWK 367
>gi|335060582|gb|AEH27626.1| DNA lyase [Ophiocordyceps sinensis]
Length = 269
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEA----NCG 498
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ E CG
Sbjct: 200 WSKL--LGKRQLPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGEKERGSEWQCG 256
Query: 499 YFKWA 503
F W+
Sbjct: 257 TFIWS 261
>gi|429216366|ref|YP_007174356.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
gi|429132895|gb|AFZ69907.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
Length = 245
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 47/174 (27%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRI 89
+L++ LSF+S M +FL + + GD N+A ID P F + E R
Sbjct: 113 RLDYKLSFNSQME---KFLSSLKKPKIICGDFNVAHKEIDIARPKDNVNNPGFTQQE-RD 168
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W L E G + D FR H E Y+ W A + N G RID+ + + + +
Sbjct: 169 WMTHFL-ELG--YIDAFRIFHKEPNR-YSWWSYRFHAREKNIGWRIDYCVVSSDIVKR-- 222
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
V +CDI+ ++ GSDHAPVY+ +
Sbjct: 223 -----------VKDCDIM---------------------DKIMGSDHAPVYLII 244
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 28 LELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK--- 84
LE + E++++ SS + L + + + + GDLN A ID D +
Sbjct: 224 LERLAYRTQEWDVALSSHLRE-----LEKKKPVILTGDLNCAHEDIDINDPAGNRKSAGF 278
Query: 85 -NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+E R F++ ++ G F D FR +HP AYT W T + N G R+D+ L +G
Sbjct: 279 TDEERESFKTNFLDHG--FVDTFRKQHPNAV-AYTYWGYRTASRPKNKGWRLDYFLVSGS 335
Query: 144 CLHQKHD 150
HD
Sbjct: 336 LSENVHD 342
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 52 FLLCQGRR--IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGS 101
+LL +R + + GDLN+A + ID +AG D + F + L++SG
Sbjct: 129 YLLKLNKRKPVIICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENF-----TTLLDSG-- 181
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D +R +P+++E Y+ W T A + N G RID+ L +
Sbjct: 182 FIDTYRYFYPDKKEKYSWWSYRTKAREVNSGWRIDYFLAS 221
>gi|19074386|ref|NP_585892.1| CLASS II (DNA LYASE) APURINIC APYRIMIDIC ENDONUCLEASE
[Encephalitozoon cuniculi GB-M1]
gi|449329427|gb|AGE95699.1| DNA lyase apurinic apyrimidic endonuclease [Encephalitozoon
cuniculi]
Length = 338
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 37/117 (31%)
Query: 84 KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ E R W RS++ GG + D +R+ +R E+YTCW + N GTRID+IL
Sbjct: 231 ETEQRKWLRSLI--DGGEYIDAYRAL-CKRPESYTCWNTMLNLRPRNLGTRIDYILIPAR 287
Query: 144 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
L++ D CDI + GSDH PVY
Sbjct: 288 FLNRLKD-------------CDI---------------------QPEIHGSDHCPVY 310
>gi|260426641|ref|ZP_05780620.1| exodeoxyribonuclease III [Citreicella sp. SE45]
gi|260421133|gb|EEX14384.1| exodeoxyribonuclease III [Citreicella sp. SE45]
Length = 260
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD------FAKNEFR 88
+ ++ L++ + R LL + GD N+ P A D A P+ + R
Sbjct: 120 KYDYKLAWMERLEARARALLADEMPAMMAGDYNVIPQAEDA--AKPESWTEDALYLPQTR 177
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
FR +L F + FR++HPE Y+ W GA Q N G RIDHIL
Sbjct: 178 AAFRRIL---NLGFTEAFRTRHPEPGH-YSFWDYQAGAWQRNNGIRIDHILLTPQAADLM 233
Query: 149 HDLQ 152
D+Q
Sbjct: 234 RDVQ 237
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN A ID R AG NE R F + ++ G F D F
Sbjct: 383 LEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTF 437
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R KHP+ YT W G + N G R+D+ L + + HD
Sbjct: 438 RQKHPDV-VGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|47227488|emb|CAG04636.1| unnamed protein product [Tetraodon nigroviridis]
Length = 533
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 420 HDQDEKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 475
H Q E KG++F L +E N EW + P C H + C+ R V K GP
Sbjct: 448 HKQGENKGRQFYVCSLPRE-NQCNFFEWADLH------FPTCH-HGKRCLMRTVLKLGPN 499
Query: 476 FGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507
GR FF C+ +G C +F+WA S++
Sbjct: 500 NGRNFFTCSFQKG------KQCDFFQWAHSEA 525
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H P RVV K G GR+F+VC+ E C +F+WA
Sbjct: 433 PCCTSHHRPAALRVVHKQGENKGRQFYVCSLPR------ENQCNFFEWA 475
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNE 86
++L++ L++ + ++ L + + + + GDLN+A ID + +AG F + E
Sbjct: 211 VRLDYRLTWDRD-FRKYLVGLKKKKSVILTGDLNVAHNEIDLKNPKTNKKNAG--FTEEE 267
Query: 87 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +L E F D FR +PER AYT W A N G R+D+ + +
Sbjct: 268 -RQGLTDLLEEG---FVDTFRKLYPEREGAYTFWTYMMNARAKNVGWRLDYFIVS 318
>gi|297561147|ref|YP_003680121.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296845595|gb|ADH67615.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 267
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 56 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
+GR + V GD NIA A +D R +AG F E R W +L E+G F DV RS
Sbjct: 145 RGRELVVCGDWNIAHAEVDLKNWRANRKNAG--FLPEE-REWLSRVLDEAG--FVDVVRS 199
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
HP++ YT W A + G RID + A P L
Sbjct: 200 LHPDQEGPYTWWSYRGRAFDNDAGWRID-LQVATPGL 235
>gi|392512723|emb|CAD25496.2| CLASS II (DNA LYASE) APURINIC APYRIMIDIC ENDONUCLEASE
[Encephalitozoon cuniculi GB-M1]
Length = 321
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 41/119 (34%)
Query: 84 KNEFRIWFRSMLVESGGSFFDVFRS--KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ E R W RS++ GG + D +R+ K PE +YTCW + N GTRID+IL
Sbjct: 214 ETEQRKWLRSLI--DGGEYIDAYRALCKRPE---SYTCWNTMLNLRPRNLGTRIDYILIP 268
Query: 142 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
L++ D CDI + GSDH PVY
Sbjct: 269 ARFLNRLKD-------------CDI---------------------QPEIHGSDHCPVY 293
>gi|452960534|gb|EME65854.1| exodeoxyribonuclease [Rhodococcus ruber BKS 20-38]
Length = 270
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
F SF++ + +R GR + V GD NIA D + + K+ F R W +
Sbjct: 132 FMASFAAHLNHRAAEAEAAGRHMVVCGDWNIAHTERDIKNWKGNVKKSGFLPGERAWLDA 191
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID-HILCAGPCLHQK 148
+L + G + DV R+ HP+ Y+ W A + G RID H+ AG K
Sbjct: 192 LLAD--GRWVDVVRALHPDVDGPYSWWSYRGKAFDTDAGWRIDYHLATAGLAARAK 245
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN A ID R AG NE R F + ++ G F D F
Sbjct: 383 LEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTF 437
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R KHP+ YT W G + N G R+D+ L + + HD
Sbjct: 438 RQKHPDV-VGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|453080166|gb|EMF08218.1| DNA lyase-like protein [Mycosphaerella populorum SO2202]
Length = 659
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 498
PLC+GH EPC + + KK G GR F++CAR GP + G
Sbjct: 581 PLCEGHSEPCKSMLTKKKGYNQGRSFWMCARPLGPTGEKDRTTG 624
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF----- 87
F F ++ R L+ G+ + +VGDLNI D + K EF
Sbjct: 171 FRYGFLCALDCRIRNLIKSGKNVVLVGDLNITRHESDSASTLEEIRKKQATREEFLAGSN 230
Query: 88 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R F +L++ +D R HP+R+ YT W + A NYG+RID
Sbjct: 231 RRIFNQLLLDGEVLGERDEGRETAVLWDTTRGFHPDRKGMYTHWDTKINARPGNYGSRID 290
Query: 137 HILCA 141
+L A
Sbjct: 291 FVLVA 295
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L Q + + GDLN+A AID +A P+ + F R ++L+ SG F D FR+ +
Sbjct: 133 LDQQKPVIYCGDLNVAHEAIDLKNAKPNVGNSGFTNEERGKMTLLLNSG--FTDTFRAMY 190
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
P+ +T W + N G RID+ + +
Sbjct: 191 PQEDNRFTWWSYMNKVRERNIGWRIDYFIVS 221
>gi|300176314|emb|CBK23625.2| unnamed protein product [Blastocystis hominis]
Length = 252
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143
+ M+ + G D FR+ +P R AY+C+ + N+GTRID+I+C P
Sbjct: 139 FYLAFMIRDGGCGMIDCFRALYPSERNAYSCFNTKLKGRINNFGTRIDYIVCTRP 193
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + + GDLN+A ID + + F K E R F S+L ++ D FR
Sbjct: 253 LDENKPVVLCGDLNVAHKEIDIANPKTNQRSAGFTKEE-RESFSSLLEDN--KLIDSFRD 309
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P+++EAY+ W + A + N G R+D+ L +
Sbjct: 310 LYPDKKEAYSYWSYRSNARKNNKGWRLDYFLVS 342
>gi|392966891|ref|ZP_10332310.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
gi|387845955|emb|CCH54356.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
Length = 258
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 14 LQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGR-RIFVVGDLNIAPAA 72
L ++ F S TG E+ +++EF F Y + L Q R ++ VVGD NIA A
Sbjct: 102 LTLLNCYFPSGTTG-EVRQGVKMEFLDDF-----YNYVQRLRQERPKLIVVGDYNIAHNA 155
Query: 73 IDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGA 126
ID D P KN E R W G D FR KHP+ AY+ W GA
Sbjct: 156 IDIHD--PIRNKNTTGFLPEERAWMNKWF---GSGMTDAFRYKHPD-EVAYSWWSYRAGA 209
Query: 127 EQFNYGTRIDHI 138
N G RID++
Sbjct: 210 RTNNKGWRIDYV 221
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 112
L + + + + GD+N+A ID + + F I R + + F D FR+ +P+
Sbjct: 228 LDEKKPVIICGDMNVAHKEIDLRNPKTNIKNAGFTIEERDGMTDFLATGFVDTFRALYPD 287
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ +AYT W A N G R+D+ L +
Sbjct: 288 KTDAYTFWSYFANARSKNIGWRLDYFLVS 316
>gi|58697046|ref|ZP_00372507.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
simulans]
gi|225630665|ref|YP_002727456.1| exodeoxyribonuclease III [Wolbachia sp. wRi]
gi|58536687|gb|EAL59975.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
simulans]
gi|225592646|gb|ACN95665.1| exodeoxyribonuclease III [Wolbachia sp. wRi]
Length = 259
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R LL + GD N+AP ID D+ + F I R L
Sbjct: 121 FEYKLKFFDNLYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKL 180
Query: 96 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR HP ++ +T W + + N G RID++L +
Sbjct: 181 RAILNLGFKDAFRISHPNLQQ-FTWWHYQGNSLRNNQGMRIDYMLLS 226
>gi|225631175|ref|ZP_03787879.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591132|gb|EEH12310.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 259
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R LL + GD N+AP ID D+ + F I R L
Sbjct: 121 FEYKLKFFDNLYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKL 180
Query: 96 -VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FR HP ++ +T W + + N G RID++L +
Sbjct: 181 RAILNLGFKDAFRISHPNLQQ-FTWWHYQGNSLRNNQGMRIDYMLLS 226
>gi|399020091|ref|ZP_10722231.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
gi|398096101|gb|EJL86430.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
Length = 258
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 112
GR I + GD NIA ID + + + F R W + E G DV+R+ HPE
Sbjct: 141 GREIVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTRVFDELG--LVDVYRTIHPE 198
Query: 113 RR-EAYTCWPSNTGAEQFNYGTRID-HILCAG 142
+AYT W + A N G RID HI AG
Sbjct: 199 TTGDAYTWWSNRGQAWANNVGWRIDYHIATAG 230
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG +E R F +L F D FR+ +P+
Sbjct: 139 VVVCGDLNVAHKEIDLKNPKSNRHNAG---FTDEERGKFGELL---AAGFVDTFRALYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
RR AYT W A + N G RID+ L +
Sbjct: 193 RRGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|294083994|ref|YP_003550751.1| exodeoxyribonuclease III [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663566|gb|ADE38667.1| exodeoxyribonuclease III [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 256
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIW 90
+ ++ LS+ + +Y R LL + + GD N+ P +D D G ++ R
Sbjct: 116 KFDYKLSWMARLYDRAVELLATEMPVVLGGDYNVLPQDVDCYDPAAWVGDALTHDDSRAA 175
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F +L + D R+ HP YT W GA Q + G RIDH+L +
Sbjct: 176 FFKIL---HAGYMDALRALHPSGVH-YTYWDYQAGAWQRDNGLRIDHLLLS 222
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
I + GDLN+A ID R +AG F E +ML+ SG F D FR +P
Sbjct: 142 IILCGDLNVAHKEIDIKNPSANRRNAG--FTDEEREK--MTMLLNSG--FIDTFRYFYPH 195
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+++AYT W A + N G RID+ + +
Sbjct: 196 KKDAYTWWSYMRNAREKNIGWRIDYFIVS 224
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-- 92
+LE+ L + + R+ L + + V GDLN+A +D +A + + F R
Sbjct: 115 RLEYRLEWEER-FRRYLQELDARKPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDK 173
Query: 93 -SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
+ L+++G F D FR ++P+R +AYT W + N G RID+ L +
Sbjct: 174 MTRLLDAG--FTDTFRHRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSA 222
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF-----SELLNAG--FIDTFRHFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ +AYT W A N G RID+ LC+
Sbjct: 192 TKEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
I + GDLN+A ID R +AG F E +ML+ SG F D FR +P
Sbjct: 142 IILCGDLNVAHKEIDIKNPSANRRNAG--FTDEEREK--MTMLLNSG--FIDTFRYFYPH 195
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+++AYT W A + N G RID+ + +
Sbjct: 196 KKDAYTWWSYMRNAREKNIGWRIDYFIVS 224
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 114
+ + GDLN+A ID + + F K E R F ++L G F D FR +P+++
Sbjct: 145 VILCGDLNVAHKDIDLANPKTNTRTAGFTKEE-RADFTTLL---GEGFKDTFRELYPDKK 200
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AYT W GA N G R+D+ + +
Sbjct: 201 SAYTFWSYMGGARAKNVGWRLDYFVVS 227
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 71/199 (35%), Gaps = 62/199 (31%)
Query: 34 IQLEFNLSFSSSMY------------YR--WE-------FLLCQGRRIFVVGDLNIAPAA 72
I LEF + +MY YR WE LL + + GDLN+A
Sbjct: 92 ITLEFETYYVVTMYTPNAKRDLSRLPYRLQWEKAAREYLTLLATQKPVVFCGDLNVAHQP 151
Query: 73 ID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 128
ID R + G +E R F +L E+G F D FR +P+ +A+T W
Sbjct: 152 IDVRNDRANVGNSGFTDEERAEFGKLL-EAG--FVDTFRHFYPDDEDAFTWWSYMANVRA 208
Query: 129 FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMS 188
N G RID+ L + + D H+ V
Sbjct: 209 RNIGWRIDYFLISRALMPYLVDASIHSSVL------------------------------ 238
Query: 189 TRLEGSDHAPVYMCLGEVP 207
GSDH P+ +CL P
Sbjct: 239 ----GSDHCPIELCLDLQP 253
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
L Q + + + GDLN+A ID R + G +E R S+L E F D FR
Sbjct: 133 LEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSEG---FVDSFRYL 189
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 167
+PE+ AYT W + N G RID+ + + ++H L S + CDI+
Sbjct: 190 YPEQEGAYTWWSYMAKVRERNIGWRIDYFIVSDKL--KEHILDSKIY-------CDIM 238
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 118
I + GDLN+A + ID +A + + F R + + S F D FR +P+ + YT
Sbjct: 139 IVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDLLNSGFIDSFRYFYPDMTDKYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
W + N G RID+ + + H+ D Q H+ V
Sbjct: 199 WWSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHV 237
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ V GD+N+A ID +A + + F R + L+ SG F D FR +PER A
Sbjct: 139 VIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGLLNSG--FIDSFRYFYPEREGA 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCA 141
YT W + N G RID+ L +
Sbjct: 197 YTWWSYMNKVRERNIGWRIDYFLVS 221
>gi|224007765|ref|XP_002292842.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971704|gb|EED90038.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 193
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPD-FAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 113
I VGDLN+A D + G AK+ E R F L G + D FR HPE
Sbjct: 70 IIWVGDLNVAFDEKDTWNEGAKHLAKSAGTTAEERASFAEQL---GAGYIDAFRHLHPEG 126
Query: 114 REAYTCWPSNTGAEQFNYGTRIDHILCA 141
R Y+ W G + N G R+D+ +C+
Sbjct: 127 RGHYSYWSQRAGNREPNKGLRLDYFVCS 154
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 49/158 (31%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F L++SG F D
Sbjct: 134 LNKAKPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF-----GELLKSG--FIDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
+R +P++ AY+ W A N G RID+ L + D + D
Sbjct: 187 YRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE------------D 227
Query: 166 ILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
L+D K + T++EGSDH PV + +
Sbjct: 228 RLVDAK---------------IHTQIEGSDHCPVELII 250
>gi|383647890|ref|ZP_09958296.1| exodeoxyribonuclease III [Sphingomonas elodea ATCC 31461]
Length = 256
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 38/173 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+ ++ L + +Y R LL + R + GD N+ P D R A + E R
Sbjct: 117 KFDYKLRWMDRLYDRAAQLLAEERPAILAGDFNVIPNDDDTFSIRAMAEDALMQPESRER 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+R +L + + D R++ P + +T W GA Q + G RIDH+L +
Sbjct: 177 YRKLLAQG---WTDALRTRFP-KGGVWTFWDYQAGAWQRDAGFRIDHLLLSPQA------ 226
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ F V++ DY+ R + SDHAP ++ L
Sbjct: 227 --ADRFTGAGVDK-----DYR-----------------GREKASDHAPTWVTL 255
>gi|374814956|ref|ZP_09718693.1| exodeoxyribonuclease III [Treponema primitia ZAS-1]
Length = 258
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+L++ L F +++ L+ GR + + GD NIA ID + + G E R W
Sbjct: 122 RLDYKLGFCAAILECCNKLVAAGRHLVLCGDYNIAHTPIDLARPKENEGNAGYLPEERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
+ + + D FR KHP Y+ W A + N G RID+
Sbjct: 182 MDTF---TSAGYADTFRDKHPGETGHYSWWSYRMSARERNVGWRIDY 225
>gi|361123868|gb|EHK96014.1| putative DNA-(apurinic or apyrimidinic site) lyase 2 [Glarea
lozoyensis 74030]
Length = 396
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144
+ G +D+ R HP R+ +TCW A N+G+RID++LC C
Sbjct: 46 KEGAVMWDICRGFHPTRKGMFTCWEQKINARPGNFGSRIDYVLCNWKC 93
>gi|225023438|ref|ZP_03712630.1| hypothetical protein EIKCOROL_00296 [Eikenella corrodens ATCC
23834]
gi|224943787|gb|EEG24996.1| hypothetical protein EIKCOROL_00296 [Eikenella corrodens ATCC
23834]
Length = 255
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
L Q + ++GD NIAPA +D D G E R WF+++L D R
Sbjct: 135 LAQYPELVLLGDFNIAPADLDVYDPEKWQGKILCSAEERAWFQTLL---DLGLTDSLRRL 191
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
HP YT W + G RIDHIL + L
Sbjct: 192 HPA-EPLYTWWDYRMNMFRRKLGLRIDHILASQALL 226
>gi|410670052|ref|YP_006922423.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
gi|409169180|gb|AFV23055.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
Length = 261
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 111
QGR++ + GD+N A ID + + F R W L + + D FRS HP
Sbjct: 146 QGRKLIICGDVNTAHREIDLARPKENETISGFLPEERAWIDRFLSQG---YVDTFRSLHP 202
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
E + YT W +GA N G RID+ +
Sbjct: 203 EPGQ-YTWWSMRSGARTRNVGWRIDYFYVS 231
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 37/149 (24%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNE--FRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ + + GDLN+A AID + ++ K +I M F D FR HPE
Sbjct: 140 KSVILCGDLNVAHQAIDLKNDKANYNKTAGYTQIEIDGMDNFLNEGFVDTFRHFHPETV- 198
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 175
AYT W + + N G RID+ L + P + + VN+ +IL +Y
Sbjct: 199 AYTYWSYRFKSRERNTGWRIDYFLVSNPLVEK-------------VNKVEILSEYF---- 241
Query: 176 GNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
GSDH P+ + +G
Sbjct: 242 -----------------GSDHCPIKLEIG 253
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|288917707|ref|ZP_06412070.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
gi|288350922|gb|EFC85136.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
Length = 263
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 42 FSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVE 97
F +++ R L GR + V GDLNI ID + + K F R W + +
Sbjct: 128 FLAAIRERMAKLAADGRHVLVCGDLNICHREIDLKNWKGNLKKAGFLPQERAWLDQLFTD 187
Query: 98 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
G F D+ R+ E+ YT W A + G RID+++ G + +
Sbjct: 188 DG--FVDLVRNFAGEQPGPYTWWSWRGRAYDTDAGWRIDYLISTGQL--------AERLL 237
Query: 158 TCHVNECDILIDYKRWKPGNAPSY--RWKGGMSTRLEGSDHAPVY 200
+ V+ AP+Y RW SDHAPVY
Sbjct: 238 SAAVDR--------------APAYDQRW----------SDHAPVY 258
>gi|372487554|ref|YP_005027119.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
gi|359354107|gb|AEV25278.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
Length = 261
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L +GR + + GD NIA ID + + + F R W + G + DV+R
Sbjct: 137 LQAEGREVVLCGDWNIAHREIDLKNWKGNLKNSGFLPEERAWIGDLFEHKG--WVDVYRR 194
Query: 109 KHPERR-EAYTCWPSNTGAEQFNYGTRID-HILCAG 142
HPE EAYT W + A N G RID HI G
Sbjct: 195 LHPEATGEAYTWWSNRGQARAKNVGWRIDYHIATPG 230
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF-----SELLNAG--FIDTFRHFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ +AYT W + + N G RID+ LC+
Sbjct: 192 TKEKAYTWWSYMQQSRERNIGWRIDYFLCS 221
>gi|257460806|ref|ZP_05625907.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
gi|257442137|gb|EEV17279.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
Length = 252
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + + F + L QG + GD+N A ID + + + F R W
Sbjct: 115 RLAYKMEFYAKFLAYARSLAEQGLGVIFCGDVNTAHREIDLANPKANSKTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
VE+ G F D FR+ H E R+AY+ W A N G RID+ + Q D
Sbjct: 175 LDE--VEAAG-FVDTFRAVHGELRDAYSWWSYRFNARAKNVGWRIDYFFISANLRSQLKD 231
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|189242136|ref|XP_001815293.1| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 130
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREA 116
+ + + GD+N+A ID + + F + R M G + D++R +PE+ +A
Sbjct: 16 KPVIICGDMNVAHKEIDLANPKTNTKNAGFTVEERDGMTAFLGNGYVDIYRHLYPEKEKA 75
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCA 141
YT W A N G R+D+ L +
Sbjct: 76 YTFWTYMGNARAKNVGWRLDYFLVS 100
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 44/156 (28%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE---FRIWFR---SMLVESGGSFFDVFR 107
L + + GDLN+A ID A P +N+ F R + L+++G F DV+R
Sbjct: 259 LDASKAVIYAGDLNVAHEEIDL--ANPKTNRNKTAGFTDQERGDFTRLLQAG--FVDVYR 314
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 167
S HP++ AYT W + A N G R+D+ + + + + V C +N
Sbjct: 315 SLHPDKTGAYTFWSTMHNARATNIGWRLDYFVVSERLMDK--------VVKCEIN----- 361
Query: 168 IDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+R+ GSDH P+ + +
Sbjct: 362 ---------------------SRVMGSDHCPLTLQI 376
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F E S L++SG F D +R +PE
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSALLDSG--FTDTYRHFYPE 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
++ AYT W A N G RID+ LC+
Sbjct: 193 KQGAYTWWSYMGKARANNTGWRIDYFLCS 221
>gi|257092320|ref|YP_003165961.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044844|gb|ACV34032.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 266
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR + V GD NIA ID + + + F R W +L E G + DV+R
Sbjct: 137 LAASGRDVVVCGDWNIAHQEIDLKNWRSNRRNSGFLPEERAWVSRLLNEGG--WCDVYRR 194
Query: 109 KHPE-RREAYTCWPSNTGAEQFNYGTRIDHILC 140
HPE E+YT W + A N G R+D+ L
Sbjct: 195 LHPESTEESYTWWSNRGQAWAKNVGWRLDYQLA 227
>gi|297539760|ref|YP_003675529.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
gi|297259107|gb|ADI30952.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
Length = 262
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
F S + + L+ GR I + GD NIA D + + + F R W +
Sbjct: 126 FKFSVMTRFMLHMQALIKSGREIIICGDWNIAHKEADLKNYKGNKKNSGFLPEERAWLTT 185
Query: 94 MLVESGGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+ E G + DV+R+ HP E YT W + A N G RID+ + A P + K
Sbjct: 186 LFDEVG--WVDVYRTLHPNTTDECYTWWSNRGQAYAKNVGWRIDYQI-ATPAIAAK 238
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 39/151 (25%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + + + V GD+N+A ID +A + + F R + L+ SG F D FR +
Sbjct: 133 LDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNSG--FIDSFRYFY 190
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
PER AYT W + N G RID+ L + + D
Sbjct: 191 PEREGAYTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKD-------------------- 230
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
GM + GSDH PV++
Sbjct: 231 --------------AGMYPEIMGSDHCPVFL 247
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F+ E R F +L F D FR +P
Sbjct: 139 VIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NTGFIDTFRYFYPN 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ +AYT W A N G RID+ LC+
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E R F ++L F D F
Sbjct: 134 LDRKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDTF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P+R AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|260941766|ref|XP_002615049.1| hypothetical protein CLUG_05065 [Clavispora lusitaniae ATCC 42720]
gi|238851472|gb|EEQ40936.1| hypothetical protein CLUG_05065 [Clavispora lusitaniae ATCC 42720]
Length = 404
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 75/200 (37%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESG 99
++F S + R L G+ + ++GD+N++ ID + G D A E R+ + L E
Sbjct: 1 MAFLSVLLKRCRKLHEMGKNVVLMGDINVSMDLIDNAE-GIDVAIKEKRVV--NNLREGA 57
Query: 100 GSFFD-------VFRSKHP-------------------------------ERREA-YTCW 120
+F + +FR+ P +RR A YT W
Sbjct: 58 AAFEETNKSECLLFRNSQPHRTLLNSYVIPSLEGVSKKEQIFCDTTRLIQKRRLAMYTVW 117
Query: 121 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPS 180
+ TGA Q N+G+RID IL +G F+ VN DIL
Sbjct: 118 NTRTGARQANFGSRIDLILASG-----------GEFIRNVVN-ADIL------------- 152
Query: 181 YRWKGGMSTRLEGSDHAPVY 200
L GSDHAPV+
Sbjct: 153 --------PFLYGSDHAPVF 164
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 329 PFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD---NNSITDTSLNVNNSVTDTSLSQ 385
P +V R + K + GQ S+ +FF K + V+ DD +NS + N N +
Sbjct: 222 PQYVSRKKPKTQ----GQQSIGNFFFKDNKVNEDDRLNHNSNIKATQNSTNEGQGGEVGN 277
Query: 386 EEVPESHH-------HSNKIPVTDYSCSVHE-LHGVNSSVCSHDQDEKKGKRFLDKERNN 437
E+ E + HSN + T ++ + LH N + S + D+
Sbjct: 278 EKSGEVTNNNVEGDLHSNAVESTVHNTKNKDILHQKNGHLSSEE----------DQPPQT 327
Query: 438 VALLEWRRIQQLMET---SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE--GPASN 492
++ +Q LM + + P CK HKEPC+ + T G+RF+ C + G
Sbjct: 328 PKTIKINSVQSLMLSMYGNPPYCK-HKEPCILKTSLTKA-TKGKRFWCCPKENKGGYGEM 385
Query: 493 PEANCGYFKWA 503
+ C YF+WA
Sbjct: 386 GDHRCDYFEWA 396
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 49/158 (31%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F L++SG F D
Sbjct: 134 LNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF-----DELLKSG--FIDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
+R +P++ AY+ W A N G RID+ L + D + D
Sbjct: 187 YRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE------------D 227
Query: 166 ILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
L+D + T++EGSDH PV + +
Sbjct: 228 RLVD---------------ANIHTQIEGSDHCPVELII 250
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + + F +E R F S L++ G + D FR
Sbjct: 135 LEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDE-RAKF-SRLLDCG--YLDSFRF 190
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
HPE R+AY+ W T A + N G RID+ + +
Sbjct: 191 LHPEERDAYSWWSYRTKARERNVGWRIDYFVVS 223
>gi|418056913|ref|ZP_12694963.1| exodeoxyribonuclease III Xth [Hyphomicrobium denitrificans 1NES1]
gi|353207449|gb|EHB72857.1| exodeoxyribonuclease III Xth [Hyphomicrobium denitrificans 1NES1]
Length = 260
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID--RCDAGPDFA--KNEFRIW 90
+ + L++ + M R E LL + + GD N+ P ++D R A + A ++E R
Sbjct: 120 KFAYKLAWMTRMRRRAEQLLEDEMPLVLAGDFNVIPESVDAKRPAAWVNDALFQSESRAA 179
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+R+++ E F D R+ HP YT W GA Q + G RIDHIL +
Sbjct: 180 WRTLVNEG---FTDATRACHPGP-GVYTFWDYQAGAFQKDDGIRIDHILLS 226
>gi|354481799|ref|XP_003503088.1| PREDICTED: endonuclease 8-like 3 [Cricetulus griseus]
gi|344236141|gb|EGV92244.1| Endonuclease VIII-like 3 [Cricetulus griseus]
Length = 606
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P CK H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 506 PRCKKHNRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 548
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S PLCK H + + R V K GP G+
Sbjct: 525 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPLCK-HGKRSIMRTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWAFS 505
FFVC + E C +F+WA S
Sbjct: 577 FFVCPLEK------EKQCNFFQWAES 596
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERR 114
+ + + GD N+A ID + GP+ K F R L+E G F D FR HP+
Sbjct: 171 KPVVMCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEVG--FVDSFRHLHPDVT 228
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A Q N G RID+ L +
Sbjct: 229 GAYSWWSYRFKARQTNAGWRIDYFLVS 255
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ + GDLN+A ID + + F R + E G F D FR +P++ +AYT
Sbjct: 139 VILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTELLGTGFIDTFRYFYPDKEDAYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
W A N G RID+ + + + D Q H
Sbjct: 199 WWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIH 234
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + I ++GDLN+A ID R + F ++E R F L E+ D FR
Sbjct: 187 LQMKKPIVLLGDLNVAHQDIDVYAPERLGSKAGFVQSE-RNNFSKFLEET--KMVDSFRY 243
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDH 137
+P R+EAY+ W TG N G RID+
Sbjct: 244 LYPHRKEAYSFWDYKTGGRLRNQGWRIDY 272
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 54 LCQGRRIFVVGDLNIAPAAID----RCDAG-PDFAKNEFRIWFRSMLVES-GGSFFDVFR 107
L + + + + GDLN+A ID + + G P F+ E R+ + E G F D FR
Sbjct: 131 LAKKKHVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEE-----RAKMTELLGAGFTDTFR 185
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+PE+ AY+ W A + N G RID+ +
Sbjct: 186 HLYPEQEGAYSWWSYRGNARKNNTGWRIDYFVV 218
>gi|302801299|ref|XP_002982406.1| hypothetical protein SELMODRAFT_421761 [Selaginella moellendorffii]
gi|300149998|gb|EFJ16651.1| hypothetical protein SELMODRAFT_421761 [Selaginella moellendorffii]
Length = 219
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 164 CDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
CDIL+++KR K P RW GG S +L+GSDHAP + L
Sbjct: 87 CDILLEFKRAKLDTLP--RWSGGRSLKLDGSDHAPAILQL 124
>gi|397641752|gb|EJK74832.1| hypothetical protein THAOC_03468, partial [Thalassiosira oceanica]
Length = 599
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAG----PDFAKN--EFRIWFRSMLVESGGSFFDVFRSKH 110
G+ + +GDLN+A D + G P A E R F L G F D FR H
Sbjct: 475 GKPVIWLGDLNVAFNEKDTWNEGAKHLPKSAGTTPEERASFDRQL---GAGFVDAFRHLH 531
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
PE R Y+ W G N G R+D+ +C+
Sbjct: 532 PEGRGHYSYWSQRAGNRGPNKGLRLDYFICS 562
>gi|401840624|gb|EJT43369.1| APN2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 520
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H E + R K G++F++C R+ G +SN E++CG+F+W
Sbjct: 474 PLCK-HGEESILRT-SKTSTNPGKKFWICKRSRGDSSNTESSCGFFQWV 520
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 44 SSMYYR--WEFLLC-------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
S + YR WE C + + + GDLN+A ID +A + + F R+
Sbjct: 115 SRLPYRLEWEDAFCAYLCALDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAK 174
Query: 95 LVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ E F D FR+ HP + YT W + G + N G RID+ L +
Sbjct: 175 MTELLAAGFVDTFRALHPNVTDKYTWWSNMPGVRERNIGWRIDYFLVS 222
>gi|414177214|ref|ZP_11431326.1| exodeoxyribonuclease III [Afipia broomeae ATCC 49717]
gi|410885140|gb|EKS32957.1| exodeoxyribonuclease III [Afipia broomeae ATCC 49717]
Length = 276
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 40/158 (25%)
Query: 53 LLCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 107
LL G+ + + GD N+ P +D R FA +FR L+E G + D R
Sbjct: 135 LLATGQPVMLAGDFNVMPTDLDVYKPERWLDDALFAPEARAAYFR--LLEQG--WTDALR 190
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 167
+ HP+ YT W A N G RIDH+L + P + D Q D+
Sbjct: 191 TLHPDE-AIYTFWDYFRNAFARNAGLRIDHLLLSPPLAERLVDAQ-----------VDVA 238
Query: 168 IDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ + W+ + SDHAPV++ L +
Sbjct: 239 V--RGWE-----------------KSSDHAPVWIELAD 257
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERR 114
+ + + GD N+A ID + GP+ K F R L+++G F D FR HP+
Sbjct: 171 KPVVMCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLDAG--FVDSFRHLHPDVT 228
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A Q N G RID+ L +
Sbjct: 229 GAYSWWSYRFKARQTNAGWRIDYFLVS 255
>gi|254564561|ref|XP_002489391.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|238029187|emb|CAY67107.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|328349821|emb|CCA36221.1| AP endonuclease 2 [Komagataella pastoris CBS 7435]
Length = 520
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP----EANCGYFKW 502
PLC H EPCV RV KK GR+F+ C+RA P N E C F+W
Sbjct: 469 PLC-DHNEPCVLRVCKKESKNKGRKFWCCSRAPRPDENSNKLDEYRCNTFQW 519
>gi|395542367|ref|XP_003773104.1| PREDICTED: endonuclease 8-like 3 [Sarcophilus harrisii]
Length = 608
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
T P C HK CV RVV+K G GR+F+ C G + CG+F+WA
Sbjct: 505 TDSPRCNVHKRLCVLRVVRKDGENKGRQFYACPLPRG------SQCGFFEWA 550
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHK 461
C+VH+ V V E KG++F + EW + S P C H
Sbjct: 510 CNVHKRLCVLRVV--RKDGENKGRQFYACPLPRGSQCGFFEW------ADLSFPFC-NHG 560
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ + R V K GP GR FFVC + + C +F+WA
Sbjct: 561 KRSIMRTVLKVGPNNGRNFFVCPLGK------DKQCNFFQWA 596
>gi|390959739|ref|YP_006423496.1| exodeoxyribonuclease III [Terriglobus roseus DSM 18391]
gi|390414657|gb|AFL90161.1| exodeoxyribonuclease III [Terriglobus roseus DSM 18391]
Length = 257
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 118
GD N+ P ID CD ++ ++ E R +R+M F D FR+ +P+ +A+T
Sbjct: 146 GDFNVIPEEID-CDKPANWVRDALFQPEPRERYRAM---KAMGFVDAFRTLYPDTADAFT 201
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
W A + N G RIDH L + P L +
Sbjct: 202 YWDYFRQAFERNRGIRIDHFLLS-PALAPR 230
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID ++ + + F R M + F D FR +P++ +AYT
Sbjct: 139 VIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMTILQDAGFTDTFRHFYPDQTDAYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCA 141
W + N G RID+ L +
Sbjct: 199 WWSYMPKVRERNIGWRIDYFLVS 221
>gi|365983476|ref|XP_003668571.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
gi|343767338|emb|CCD23328.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
Length = 556
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
PLCK H E + R K G+RF++C + G +NP+A+CG+F+W
Sbjct: 510 PLCK-HGEESILRT-SKTSSNPGKRFWICKKPRGDLNNPDASCGFFQW 555
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ + GDLN A ID D + F R F + L++ G F D FR K+P+
Sbjct: 130 VILTGDLNCAHQEIDIHDPKRNLKSAGFTEEERKSFSAQLLQRG--FKDTFREKYPDV-V 186
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
YT W TGA N G R+D+ L + + HD+
Sbjct: 187 GYTYWNYRTGARVRNRGWRLDYFLVSEALAERVHDI 222
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+LE+ L++ + R+ L + + GDLN+A ID R +AG +E
Sbjct: 115 RLEYRLTWEED-FRRYVQTLNSHKPVIFCGDLNVAHQEIDLKNPQANRRNAG---FTDEE 170
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R+ F S L+ESG F D FR +PE++++Y+ W A N G RID+ C L
Sbjct: 171 RLKF-SELLESG--FIDTFRYLYPEQKDSYSWWSYRFNARVRNAGWRIDY-FCMSERL-- 224
Query: 148 KHDLQSHNFVT 158
K LQS T
Sbjct: 225 KDSLQSAEIYT 235
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 10 DGVLLQIMVILFYSMCT-----GLELI-VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVV 63
+G ++ FY +CT G +L+ + +L++N F + L + + + +
Sbjct: 460 EGRIITAEYEQFYLICTYVPNAGRKLVSLPKRLKWNDEFREHVK-----ALDEKKPVIIC 514
Query: 64 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTCWPS 122
GD+N+A ID + + F R+ + E G F D FR HPE+ AYT W
Sbjct: 515 GDMNVAHNEIDLTNPKTNKKNAGFTEEERAGMTELLGDGFVDTFRHFHPEKV-AYTFWSY 573
Query: 123 NTGAEQFNYGTRIDHILCAGPCL 145
+ N G R+D+ + + L
Sbjct: 574 MANSRAKNVGWRLDYFIVSERLL 596
>gi|320592520|gb|EFX04950.1| DNA lyase [Grosmannia clavigera kw1407]
Length = 795
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 33/102 (32%)
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
D R HP+RR YTCW + N+G+RID +LC S + V
Sbjct: 268 LHDACRELHPQRRGMYTCWDTRKNHRPANFGSRIDFVLC------------SPRLMQLLV 315
Query: 162 NECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ DI +L GSDH PVY+ L
Sbjct: 316 IQADI---------------------QPQLLGSDHCPVYVVL 336
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 434 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 493
E N+ A+ W + L + P+C+ H EPC V +KPG GR F++CAR GP
Sbjct: 713 EINDGAMAGWSALG-LGQRQSPMCE-HGEPCKIFVTRKPGVNSGRSFYMCARPPGPLGRR 770
Query: 494 EA----NCGYFKW 502
E C F W
Sbjct: 771 EKGTAWQCTTFFW 783
>gi|333982708|ref|YP_004511918.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333806749|gb|AEF99418.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 266
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L+ GR + V GD NIA D + + + F R WF +L G + DV+R
Sbjct: 136 LMASGREVVVCGDWNIAHQQADLKNWRGNRKNSGFLPEERAWFGQVLQTQG--WVDVYRK 193
Query: 109 KHPERREA-YTCWPSNTGAEQFNYGTRIDH 137
HP+ +A YT W + A N G RID+
Sbjct: 194 LHPDATDACYTWWSNRGQAWDKNVGWRIDY 223
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 64 GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 116
GD N+A ID R +AG F E + + L+ SG F D FR +P++++A
Sbjct: 143 GDKNVAHQEIDLKNPKSNRKNAG--FTDEERQK--MTELLNSG--FIDAFRYLYPDKKDA 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 169
YT W A + N G RID+ + + + D++ H+ V + C +L+D
Sbjct: 197 YTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVMGS-DHCPVLLD 248
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F E S+L++SG F D FR HP
Sbjct: 143 VIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FTDTFRYFHPT 196
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A + N G RID+ LC+
Sbjct: 197 LEGAYSWWSYMGKARENNTGWRIDYFLCS 225
>gi|149248308|ref|XP_001528541.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448495|gb|EDK42883.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 503
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 40/143 (27%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD-FAKN----------- 85
F + F + + R + L G+++ V+GD+N++ ID + D KN
Sbjct: 206 FRMKFLTHLLLRCQNLDRIGKKVVVMGDINVSLDLIDSAEGINDRLMKNLITDCRDGHTF 265
Query: 86 ------------------------EFRIWFRSMLVES----GGSFFDVFRSKHPERREAY 117
F + S+L ES +D R RR+ Y
Sbjct: 266 EVQNYEECCGFKTSRLFRQLLNSYVFSSMWHSLLPESEKMNNQFLYDTTRYIQGRRRKMY 325
Query: 118 TCWPSNTGAEQFNYGTRIDHILC 140
T W + T + Q NYG+RID ILC
Sbjct: 326 TVWNTLTSSRQINYGSRIDLILC 348
>gi|408678728|ref|YP_006878555.1| Exodeoxyribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328883057|emb|CCA56296.1| Exodeoxyribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 276
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 55 CQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 107
GR + V GD NIA D + +AG F E R W +L E+ G++ DV R
Sbjct: 152 ADGREVVVCGDWNIAHREADLKNWRANKKNAG--FLPEE-REWLGRVLDEADGAYVDVVR 208
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+ HPE+ Y+ W A + G RID+ + A P L K
Sbjct: 209 ALHPEQEGPYSWWSYRGRAFDNDTGWRIDYQI-ATPGLAAK 248
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRI 89
+L + L+F ++ E L + + + ++GDLN+A ID + F E R
Sbjct: 116 RLGYKLAFDQAIENYLEGLRAR-KGVVLMGDLNVAHREIDIARPKQNQKSAGFTPEE-RA 173
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W + L + + D FR HP+ AYT W A N G RID+IL + L
Sbjct: 174 WIDAFLKKG---WIDTFRHLHPDATGAYTWWTYRFNARAKNIGWRIDYILISEDLLPHLM 230
Query: 150 D--LQSHNFVTCHVNECDIL 167
D + + + HV +L
Sbjct: 231 DAYIYYDAYASDHVPVVAVL 250
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 64 GDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
GDLN+A ID R +AG D + F ++E+G F D FR +P+R E
Sbjct: 154 GDLNVAHTEIDLANPKTNRKNAGFTDEERGRF-----DAIIEAG--FIDTFRHLYPDRTE 206
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
Y+ W A Q N G RID+ + +Q D
Sbjct: 207 QYSWWSYRAAARQRNIGWRIDYFCVSDAVKNQIRD 241
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|171060718|ref|YP_001793067.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
gi|170778163|gb|ACB36302.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
Length = 262
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 109
L GR ++GD+NIA ID + + + F R W +L ++G DV+R
Sbjct: 140 LKAGREFVLMGDVNIAHQEIDLKNWKGNLKNSGFLPEERAWMTRLLGDTG--LVDVYRRL 197
Query: 110 HPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
P+ EAYT W + A N G RID+ L A P L
Sbjct: 198 RPDATDEAYTWWSNRGQARAKNVGWRIDYHL-ATPGL 233
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E R F ++L F D F
Sbjct: 134 LDRKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P+R AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 15/91 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F + L+++G F D FR+ +P
Sbjct: 139 VVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF-----TELLQAG--FIDTFRALYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
+R AYT W A + N G RID+ L +
Sbjct: 192 DRTGAYTWWSYLRHARETNAGWRIDYFLVSA 222
>gi|46201885|ref|ZP_00208288.1| COG0708: Exonuclease III [Magnetospirillum magnetotacticum MS-1]
Length = 258
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 39/174 (22%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RI 89
+ ++ L++ + + + LL Q + GD NI P D D P++ + R
Sbjct: 118 KYDYKLAWMARLRAHAQSLLTQDIPFVLGGDFNICPTDDDVYDP-PNWQNDALCRPDSRA 176
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
FR+ +V G + FR+ HPE + Y+ W GA Q + G RIDH L +
Sbjct: 177 AFRA-IVNLG--LTEAFRALHPEEKGRYSFWDYQAGAWQRDEGLRIDHFLLS-------- 225
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
H+ CDI AP + K SDH PV++ L
Sbjct: 226 -----PRAADHLQACDI---------DRAPRGKEK--------ASDHTPVWIEL 257
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GD+N+A ID R +AG +E R F +L F D F
Sbjct: 133 LNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAG---FTDEERTKFTELL---KAGFTDSF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
R +P+R AY+ W A + N G RID+ + + Q + + H
Sbjct: 187 RYLYPDRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 18 VILFYSMCTGLELI-VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC 76
V+ Y G L+ + +L++N F + L + + + GD+N+A ID
Sbjct: 1096 VVNVYVPHAGRNLVTLPKRLDWNEQFEKFIKN-----LDSQKPVIICGDMNVAHKEIDLA 1150
Query: 77 DAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 135
+ + F + R M G + D++R +PE+ +AYT W A N G R+
Sbjct: 1151 NPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYMRNARPNNVGWRL 1210
Query: 136 DHILCA 141
D+ L +
Sbjct: 1211 DYFLVS 1216
>gi|333997681|ref|YP_004530293.1| exodeoxyribonuclease III [Treponema primitia ZAS-2]
gi|333741451|gb|AEF86941.1| exodeoxyribonuclease III [Treponema primitia ZAS-2]
Length = 260
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+L + L F ++M L+ GR + + GD NIA ID + + G E R W
Sbjct: 122 RLGYKLDFCAAMLECCNKLVSAGRHLVLCGDYNIAHTPIDLARPKENEGNAGYLPEERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
+ + + D FRS HP Y+ W A + N G R+D+
Sbjct: 182 MDTFI---AAGYVDTFRSFHPGETGCYSWWSYRMSARERNVGWRLDY 225
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 44/172 (25%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRI 89
+L++ + F + E G+ + + GD NIA ID + P + E R
Sbjct: 117 RLDYKIDFCDEILNYLEERKKSGKAVIITGDYNIAHKPIDLARPKDNEENPGYLPEE-RE 175
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
W + +E+G + D FR +PE + YT W T A + N G RID+ C++++
Sbjct: 176 WM-TKFIEAG--YVDSFRKFYPEEVK-YTWWSYRTRAREKNIGWRIDYF-----CINKES 226
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
+ ILID G+ + GSDH P+Y+
Sbjct: 227 E--------------GILID---------------SGIRNDVFGSDHCPIYI 249
>gi|290959716|ref|YP_003490898.1| exodeoxyribonuclease III [Streptomyces scabiei 87.22]
gi|260649242|emb|CBG72356.1| putative exodeoxyribonuclease III [Streptomyces scabiei 87.22]
Length = 267
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 51 EFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
E GR + V GD NIA D R + E R W +L E G + DV
Sbjct: 139 ERAAADGREVVVCGDWNIAHQQADLKNWRANQKNSGFLPEEREWLGRVLDEGDGGYVDVV 198
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
R+ HPE Y+ W A + + G RID + A P L K
Sbjct: 199 RALHPEVEGPYSWWSYRGRAFERDTGWRID-LAVATPGLASK 239
>gi|406963318|gb|EKD89414.1| hypothetical protein ACD_34C00070G0007 [uncultured bacterium]
Length = 256
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 55 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 110
+G+ I + GD N A ID + + + F R W + L E+G F D FR +
Sbjct: 140 AKGKNIIITGDFNTAHKEIDLANPKENSKISGFLPEERAWIDTYL-ENG--FTDAFRLLY 196
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
PE+ + YT W A G R+D+ L + P + + D+
Sbjct: 197 PEKVQ-YTWWTYRVNARARGIGWRLDYYLVSNPFMQRVKDV 236
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L+F + F L+ QG+++ + GD+N A +D + + ++ F R W
Sbjct: 118 RLQFKMDFYDCFLKDVNALVAQGKKVIICGDVNTAHTEMDLKNPKSNAKRSGFLPMEREW 177
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
E+G + D +R HP+ E Y+ W A N G RID+ + + D
Sbjct: 178 LDHFF-ENG--YVDTYRHLHPDTVE-YSWWSYRFNARANNAGWRIDYFFVSDNAIDMVKD 233
Query: 151 LQSHNFVTCHVNECDILIDYK 171
H VT + C + I+ K
Sbjct: 234 AAIHTEVTGS-DHCPVSIEIK 253
>gi|78186003|ref|YP_374046.1| AP endonuclease [Chlorobium luteolum DSM 273]
gi|78165905|gb|ABB23003.1| AP endonuclease, family 1 [Chlorobium luteolum DSM 273]
Length = 267
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 38 FNLSFSSSMY-YRWEFLLCQGRRIFVVGDLNIAPAAID--RCDAGPDFAKNEFRIWFRSM 94
L + +M+ Y E L C GR+I V GD+N+A +D R + P R RS
Sbjct: 120 LKLGYLEAMHEYVRELLAC-GRQILVTGDMNVAHRQVDLHRSENRP--GATGIRPEERSA 176
Query: 95 ---LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
L+ G S DV R +PER + +T WP A + N G RID +G
Sbjct: 177 IDRLIALGLS--DVMRELNPERDDLFTWWPYWRMARERNIGWRIDCFYLSG 225
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F +L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEEG---FIDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 158
+PE+ AY+ W GA N G R+D+ + + H+ D + ++ VT
Sbjct: 190 LYPEQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVT 239
>gi|357418867|ref|YP_004931859.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
gi|355396333|gb|AER65762.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
Length = 262
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 112
+I VVGDLN+AP +D + PD +N + + F S+L E G F DVFR P
Sbjct: 145 KIIVVGDLNVAPTDMDVTN--PDNKRNHVCFHEDVKKAFNSLL-EWG--FVDVFRKHRPG 199
Query: 113 RREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHD 150
E ++ W A + N G RIDH+L P + D
Sbjct: 200 EGE-FSFWDYRVKNALERNIGWRIDHLLATKPVAERSKD 237
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E R F ++L F D F
Sbjct: 134 LDRKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P+R AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F+I L+++G F D
Sbjct: 133 LDKKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQI-----LLDAG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +PE+ Y+ W A + N G RID+ L +
Sbjct: 186 FRYFYPEQTGIYSWWSYRFKAREKNAGWRIDYFLAS 221
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHP 111
+L + + + V GDLN+A ID + + F RS E F D FR +P
Sbjct: 132 VLDEKKPVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGFVDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
+ AY+ W A N G RID+ L + + D + H+ V
Sbjct: 192 DEVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEV 237
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GD+N+A ID R +AG D +++F + L+++G F D
Sbjct: 133 LNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKF-----TELLKAG--FTDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
FR +P+R AY+ W A + N G RID+ + + Q + + H
Sbjct: 186 FRYLYPDRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + S+L+ +G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SVLLNAG--FTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P++ AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|406706210|ref|YP_006756563.1| exodeoxyribonuclease III [alpha proteobacterium HIMB5]
gi|406651986|gb|AFS47386.1| exodeoxyribonuclease III [alpha proteobacterium HIMB5]
Length = 258
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 60 IFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
I + GD NI P+A D + + E R +R ML DV+R + E +E
Sbjct: 144 IILAGDFNIIPSAEDVYNPKSFEDDALFRLEIRKKYREML---NLGLNDVYRHFY-EDKE 199
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
YT W GA Q N G RIDH L + +
Sbjct: 200 GYTFWDYMRGAWQKNNGMRIDHFLVSNSLI 229
>gi|410026269|gb|AFV52292.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 131
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
PLC+GH EPC + KK G GR F++CAR GP+
Sbjct: 95 PLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPS 130
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 48 YRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFD 104
Y EFL L + + + GD+N+A ID + + + F R + E F D
Sbjct: 125 YLREFLQELDTKKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTELLNNGFVD 184
Query: 105 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 164
FR +PE+ YT W + N G RID+ L + D Q H+ + + C
Sbjct: 185 TFRHLNPEKENVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHSDIMGS-DHC 243
Query: 165 DILID 169
+L++
Sbjct: 244 PVLLE 248
>gi|410026259|gb|AFV52286.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 130
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
PLC+GH EPC + KK G GR F++CAR GP+
Sbjct: 95 PLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPS 130
>gi|441144079|ref|ZP_20963170.1| exodeoxyribonuclease [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440621688|gb|ELQ84647.1| exodeoxyribonuclease [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 261
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 112
GR + V GD NIA D + + K F R W +L E G + DV R+ HPE
Sbjct: 139 GREVLVCGDWNIAHQEADLKNWKANQKKAGFLPEERAWLSRVLDEHDGGYTDVIRTLHPE 198
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILC 140
Y+ W A + G RID+ +
Sbjct: 199 TEGPYSWWSYRGRAFDNDAGWRIDYHMA 226
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-- 92
+LE+ +F+ M L + + + GDLN+A AID + + F I R
Sbjct: 120 RLEWGAAFTDYMK-----RLDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEERED 174
Query: 93 -SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+ L+ +G F D FR +PER +AY+ W A + N G RID+ + + CL
Sbjct: 175 FTALLNNG--FVDSFRHLYPERTDAYSWWSFLFNARERNIGWRIDYFVLS-KCL 225
>gi|288941776|ref|YP_003444016.1| exodeoxyribonuclease III [Allochromatium vinosum DSM 180]
gi|288897148|gb|ADC62984.1| exodeoxyribonuclease III [Allochromatium vinosum DSM 180]
Length = 278
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKN-----------EFRIWFRSMLVESGGSFFDVFRS 108
I ++GD+N+AP +D G D AK E R WF+++L D +R+
Sbjct: 148 IVLLGDMNVAPLDLD-IGIGADNAKRWLRTGKCAFLPEEREWFQALL---DWGLIDAYRT 203
Query: 109 KHPERREAYTC--WPSNTGAEQFNYGTRIDHILCAGPC 144
+HPE + ++ + S + +G RIDHIL + P
Sbjct: 204 RHPETADRFSWFDYRSRGFEREPKHGLRIDHILISAPL 241
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 49 RWE-------FLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRS 93
RWE L Q + + + GD+N+A ID R +AG D +++ +
Sbjct: 121 RWEDEFRTYLITLNQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----T 175
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
L+E+G F D FR +P++ +AYT W A N G RID+ L +
Sbjct: 176 ALLEAG--FTDTFRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 92
+L + +++ +M E++ L + + + GDLN+A ID + + F R
Sbjct: 118 RLSYRMTWEKAMK---EYMTKLAAEKPVILCGDLNVAHEDIDIANPASNHKNAGFTDEER 174
Query: 93 SMLVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ + F D FR HP+ ++AY+ W A + N G RID+ L +
Sbjct: 175 GRMTDLLAAGFTDSFRHLHPDEKDAYSWWSYFAKARERNVGWRIDYFLVS 224
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 39/153 (25%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + + + V GDLN+A ID + + F I R + L+E+G F D FR +
Sbjct: 134 LEEKKPVIVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFTELIENG--FIDTFRYFY 191
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
P++ AY+ W A + N G RID+ C L D L+D
Sbjct: 192 PDKIHAYSWWSYRGNARKNNTGWRIDY-FCVSSSLK------------------DRLVD- 231
Query: 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ ++EGSDH PV + +
Sbjct: 232 --------------AEIHDKVEGSDHCPVVLYI 250
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 114
+ + GDLN+A ID + P F E R F+++L F D FR +PE+
Sbjct: 140 VIICGDLNVAHREIDLKNPAANRKNPGFTDEE-RAEFQTLL---DAGFVDTFRYFYPEKP 195
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
E Y+ W A N G RID+ L +
Sbjct: 196 EEYSWWSYRFNARSRNAGWRIDYFLVS 222
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-------FAKNEFRIWFRSMLVESGGSFFDVF 106
L + + I + GDLN+A ID A PD F+ E R F +L + D F
Sbjct: 133 LDKNKPIVLCGDLNVAHNEIDL--ANPDTNHKSAGFSDEE-RAKFTELL---ASGYVDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
R +P+R + Y+ W + A + N G RID+ + + L + D + H V
Sbjct: 187 RHFYPDRADEYSWWSNFNKARERNIGWRIDYFVVSERFLDRIEDSKIHQSV 237
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
IFV DLN+A ID + P+ + +E R+ F+ L F D FR +P++
Sbjct: 143 IFVCWDLNVAHKEIDLTNPKPNRWNAWFTDEERMGFQKFL---DAGFIDTFRFFYPDKAG 199
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAG 142
Y+ W + A N G RID+ L +
Sbjct: 200 EYSWWSNFANARSRNIGWRIDYFLASW 226
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFR 92
+L+F L F++ + + L + + + + GD NIA ID + P + R WF
Sbjct: 115 RLDFKLKFNNEIE-NFVLKLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFS 173
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
L F D FR HP R+ Y+ W A + N G R+D+ + + +L+
Sbjct: 174 HFL---SLGFIDTFRYLHPNVRK-YSWWSYMGKAREKNLGLRLDYCIVS-------EELK 222
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ DILID ++GSDHAP+ + L
Sbjct: 223 DR------IKMADILID---------------------IQGSDHAPIILEL 246
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNE 86
+L++ +++ S +R L + ++ VV GDLN+A ID R +AG +E
Sbjct: 115 RLDYRMAWEDS--FRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDE 169
Query: 87 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
R F +L F D FR+ +P+R AYT W A + N G RID+ L +
Sbjct: 170 ERGKFGELL---AAGFVDTFRALYPDRTGAYTWWSYLRHARETNAGWRIDYFLVSA 222
>gi|170740918|ref|YP_001769573.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
gi|168195192|gb|ACA17139.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
Length = 270
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 60 IFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ + GD N+ P +D D G + E R FR++L E F D R+ ER
Sbjct: 147 LVLAGDYNVIPEPVDVADPAAWLGDALFRPESRAAFRALLNEG---FADALRACD-ERPG 202
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
YT W GA N G RIDH+L + L +
Sbjct: 203 LYTFWDYQAGAWPRNLGIRIDHLLLSPQALDR 234
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 51 EFLLCQGRR--IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGG 100
++LL R+ + V GDLN+A ID R +AG D + +F+ +L+++G
Sbjct: 130 KYLLQLDRQKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG- 183
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
F D FR +P + Y+ W A + N G RID+ L + + D + H
Sbjct: 184 -FIDTFRHFYPTQENIYSWWSYRFKAREKNAGWRIDYFLASSRIADKLQDAKIH 236
>gi|162456399|ref|YP_001618766.1| exodeoxyribonuclease III [Sorangium cellulosum So ce56]
gi|161166981|emb|CAN98286.1| exodeoxyribonuclease III [Sorangium cellulosum So ce56]
Length = 269
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-------SMLVESGGSFFDVFRSKH 110
++I + GD N+AP AID + K E ++ F L+E G D FR+ H
Sbjct: 141 QQIMICGDFNVAPEAIDVAEP----KKWEGQVLFHPDERAALGRLMEWG--LVDAFRACH 194
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
P + EAY+ W GA + N G RID L P + D+
Sbjct: 195 PAK-EAYSWWDYRMGAFRRNKGLRIDLALVTRPLAARCTDV 234
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFR 92
+L+F L F++ + + L + + + + GD NIA ID + P + R WF
Sbjct: 115 RLDFKLKFNNEIE-NFVLKLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFS 173
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
L F D FR HP R+ Y+ W A + N G R+D+ + + +L+
Sbjct: 174 HFL---SLGFIDTFRYLHPNVRK-YSWWSYMGKAREKNLGLRLDYCIVS-------EELK 222
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ DILID ++GSDHAP+ + L
Sbjct: 223 DR------IKMADILID---------------------IQGSDHAPIILEL 246
>gi|410026264|gb|AFV52289.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 130
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 489
PLC+GH EPC + KK G GR F++CAR GP
Sbjct: 95 PLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGP 129
>gi|373449820|ref|ZP_09541917.1| Exodeoxyribonuclease III [Wolbachia pipientis wAlbB]
gi|371932965|emb|CCE76903.1| Exodeoxyribonuclease III [Wolbachia pipientis wAlbB]
Length = 275
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 36 LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 95
E+ L F ++Y R LL + GD N+A ID D+ + F I R L
Sbjct: 121 FEYKLKFFDNLYERMGTLLKNEELTIIAGDYNVALDEIDVFDSNLLNGQVCFHIKEREKL 180
Query: 96 --VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ + G F D FR HP ++ +T W + + N G RIDH+L +
Sbjct: 181 RGILNLG-FKDAFRISHPNLQQ-FTWWNYQGNSLRNNQGMRIDHMLLS 226
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 25/125 (20%)
Query: 27 GLELI-VRIQLEFNLSFSSSMYYRWEFL--LCQGRRIFVVGDLNIAPAAID-------RC 76
GLE I R+Q E + E+L L + + + + GDLN+A ID R
Sbjct: 113 GLERIDYRLQWEADFK---------EYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRK 163
Query: 77 DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
+AG F+ E + S L+ +G F D FR +P+R AY+ W T A + N G R+D
Sbjct: 164 NAG--FSDQEREAF--SALLNTG--FTDSFRYLYPDREGAYSWWSYRTNAREKNIGWRLD 217
Query: 137 HILCA 141
+++ +
Sbjct: 218 YVIVS 222
>gi|319945181|ref|ZP_08019443.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
gi|319741751|gb|EFV94176.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
Length = 162
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 57 GRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
GR I + GD N+A ID R + E R W S+L E G F DVFR P
Sbjct: 44 GREIILCGDWNVAHKEIDLKNWRSNQKNSGFLPEERQWLSSLLDEIG--FVDVFRQLDP- 100
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILC 140
R E YT W + A N G RID+ +
Sbjct: 101 RPEQYTWWSNRGQAWAKNVGWRIDYQIA 128
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D +N+ S+L++SG F D
Sbjct: 133 LNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERNKM-----SVLLDSG--FIDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+R +PE+ Y+ W A + N G RID+ L +
Sbjct: 186 YRYLYPEQEGVYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|389877363|ref|YP_006370928.1| exodeoxyribonuclease III Xth [Tistrella mobilis KA081020-065]
gi|388528147|gb|AFK53344.1| exodeoxyribonuclease III Xth [Tistrella mobilis KA081020-065]
Length = 277
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVG-DLNIAPAAIDRCD----AGPDFAKNEFRI 89
+ + L+F + +L R V+G D NIAP A D D AG E R
Sbjct: 119 KFPYKLAFLDAFVSHARSMLGDASRPAVIGGDFNIAPEAGDLYDPKGWAGDVLFHPEERR 178
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR++L + + D FR+ H E Y+ W G Q ++G RIDH+L +
Sbjct: 179 RFRAVLHQG---WTDAFRALHAEAGR-YSWWDYRAGMWQKDHGLRIDHLLLS 226
>gi|345781721|ref|XP_532852.3| PREDICTED: endonuclease 8-like 3 [Canis lupus familiaris]
Length = 604
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
++ P C H C R+V+K G GRRF+ C+ EA CG+F+WA
Sbjct: 498 VLNADSPRCSKHNRLCALRIVRKDGDNKGRRFYACSLPR------EAQCGFFQWA 546
>gi|398785237|ref|ZP_10548273.1| exodeoxyribonuclease III [Streptomyces auratus AGR0001]
gi|396994602|gb|EJJ05635.1| exodeoxyribonuclease III [Streptomyces auratus AGR0001]
Length = 267
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 55 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 110
GR + V GD NIA D + + K+ F R W +L E G + DV R+ H
Sbjct: 143 ADGREVVVCGDWNIAHQEADLKNWKANQKKSGFLPEERAWLTEVLDEHHGGYVDVVRTLH 202
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
P+ Y+ W A + G RID+ + A P L +
Sbjct: 203 PDTAGPYSWWSYRGRAFDNDAGWRIDYAM-ATPGLAAR 239
>gi|381204263|ref|ZP_09911334.1| exodeoxyribonuclease III Xth, partial [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 186
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 9 RDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYR-WEF-LLCQGRRIFVVGDL 66
++G L + Y + L R + N + + ++R W L+ G+++ V GDL
Sbjct: 18 KEGRFLMLEFQDLYVLSLYLPSGTRSEERQNFKYETLAWFRRWSSSLVHSGKQVLVCGDL 77
Query: 67 NIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 122
NIA ID + + + F R W + G F DVFRS +P+ + YT W +
Sbjct: 78 NIAHQEIDLKNWKGNRKNSGFLPEEREWMTKLF--GIGGFCDVFRSLYPDLK-IYTWWSN 134
Query: 123 NTGAEQFNYGTRIDHILCA 141
A + N G RID+ +
Sbjct: 135 RGRAWEKNVGWRIDYQIAT 153
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L Q + + GDLN+A ID + P F+ E R F ++L ESG F D FR
Sbjct: 133 LDQEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEE-RGKFTTVL-ESG--FVDTFRH 188
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
+PE+ AY+ W A N G RID+ + + + D + H
Sbjct: 189 FYPEKEGAYSWWSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIH 234
>gi|357976842|ref|ZP_09140813.1| exodeoxyribonuclease III [Sphingomonas sp. KC8]
Length = 258
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID------RCDAGPDFAKNEFR 88
+ ++ L++ + L R + + GD N+ P + R A A+ E R
Sbjct: 117 KFDYKLAWMDQLRLHAAGLFASERDVVLAGDYNVIPTDLKDDIFSARAMADDALAQPESR 176
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FRS+L + + D R+ HP YT W GA + G RIDH+L +
Sbjct: 177 AAFRSLLAQG---WTDAIRAIHPSG-PIYTFWDYQAGAWARDAGFRIDHLLLS 225
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 47/154 (30%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID + AG F+K E R+ F S L+++G F D FR +P+
Sbjct: 139 VILCGDLNVAHENIDLKNWKTNQLSAG--FSKEE-RMKF-SALLDAG--FIDTFRYFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172
AYT W A + N G RID+ C L H+ E IL D
Sbjct: 193 LEGAYTWWNYRFNARKTNAGWRIDY-FCVSTRLQD------------HLQEARILDD--- 236
Query: 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206
+ GSDH PV + L E
Sbjct: 237 ------------------IVGSDHCPVELILKET 252
>gi|392408199|ref|YP_006444807.1| exodeoxyribonuclease III [Anaerobaculum mobile DSM 13181]
gi|390621335|gb|AFM22482.1| exodeoxyribonuclease III [Anaerobaculum mobile DSM 13181]
Length = 262
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 112
+I VGD+N+AP D+ P+ +N E R F + V+S G F DVFR HPE
Sbjct: 144 KILWVGDMNVAPE--DKDVTNPETKRNHVCFHEEIRDLFDT--VKSWG-FVDVFRKHHPE 198
Query: 113 RREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHD 150
+ +T W A + N G R+DHIL P + D
Sbjct: 199 EGQ-FTFWDYRVKNALERNIGWRVDHILATNPVAERSVD 236
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFR 92
+L+F L F++ + + L + + + + GD NIA ID + P + R WF
Sbjct: 115 RLDFKLKFNNEIE-NFVLKLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFS 173
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
L F D FR HP R+ Y+ W A + N G R+D+ + + +L+
Sbjct: 174 HFL---SLGFIDTFRYLHPNVRK-YSWWSYMGKAREKNLGLRLDYCIVS-------EELK 222
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ DILID ++GSDHAP+ + L
Sbjct: 223 DR------IKMADILID---------------------IQGSDHAPIILEL 246
>gi|329941236|ref|ZP_08290515.1| exodeoxyribonuclease [Streptomyces griseoaurantiacus M045]
gi|329299767|gb|EGG43666.1| exodeoxyribonuclease [Streptomyces griseoaurantiacus M045]
Length = 267
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 55 CQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
+GR + V GD NIA D R + E R W +L G + DV R+ H
Sbjct: 143 AEGREVVVCGDWNIAHHEADLKNWRANTKNAGFLPEERAWLSRVLDAEDGGYVDVMRALH 202
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
PE YT W A + G RID + A P L ++
Sbjct: 203 PEVEGPYTWWSYRGRAFDNDSGWRID-LAVATPGLARR 239
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--FLEAG--FIDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKDQIED 231
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 47/174 (27%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRR---IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRI 89
+L+F L F++ + E + + RR + + GD NIA ID + P + R
Sbjct: 115 RLDFKLKFNNEI----ENFVLKLRRAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERS 170
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
WF L F D FR HP R+ Y+ W A + N G R+D+ + +
Sbjct: 171 WFSHFL---SLGFIDTFRYLHPNVRK-YSWWSYMGKAREKNLGLRLDYCIVS-------E 219
Query: 150 DLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+L+ + DILID ++GSDHAP+ + L
Sbjct: 220 ELKDR------IKMADILID---------------------IQGSDHAPIILEL 246
>gi|431902312|gb|ELK08813.1| Endonuclease VIII-like 3 [Pteropus alecto]
Length = 603
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|389757270|ref|ZP_10191635.1| exodeoxyribonuclease III [Rhodanobacter sp. 115]
gi|388430955|gb|EIL88070.1| exodeoxyribonuclease III [Rhodanobacter sp. 115]
Length = 256
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 14 LQIMVILFYSMCTGLELIVRIQLEFN-LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAA 72
L ++ + F S +G E R Q +F + + + ++ +W GR + GD NI +
Sbjct: 103 LSVVSLYFPSGSSGDE---RQQFKFRAMEWIAPVFEKWR---KSGRDYVICGDWNIVRSE 156
Query: 73 IDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE 127
D + + KN E R WF M+ G + D +R+ HPE E YT W + A
Sbjct: 157 KDIKNWKSN-QKNSGCLPEERAWFNGMI--DGRGWVDSYRTLHPEG-EDYTWWSNRGRAR 212
Query: 128 QFNYGTRIDHILCAGPCLHQK 148
+ + G R+D+ +C P L ++
Sbjct: 213 ENDVGWRLDYQICT-PSLRER 232
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRI 89
+L++ L++ ++ R L+ +GR + V GD NIA ID + P F E R
Sbjct: 123 RLDYKLAYCDAILKRCNSLVGEGRHVVVCGDYNIAHKPIDLARPKENEGNPGFLPEE-RA 181
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 138
W S L + D FR + E YT W T + N G R+D+
Sbjct: 182 WMSSFL---DAGYTDTFRIFNNEGGN-YTWWSYRTKGRERNVGWRLDYF 226
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GDLN+A ID R +AG +E R F+ +L F D F
Sbjct: 133 LDKKKPVIVCGDLNVAHQEIDLKNPKSNRRNAG---FTDEERGKFQELL---DAGFIDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R HP++R+ Y+ W A + N G RID+ + +
Sbjct: 187 RYFHPDQRDIYSWWSYRFKARERNSGWRIDYFVTS 221
>gi|70671415|emb|CAI59775.1| putative DNA lyase [Xanthoria parietina]
Length = 298
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 406 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE---WRRIQQLMETSIPLCKGHKE 462
+ + G ++ + KKG D ++ + + W ++ + + P C+ H E
Sbjct: 179 ATQDPDGSTDTLSAQTSPFKKGVDMEDSDKVHDPIQSKECWSKL--FTKPAAPRCESHDE 236
Query: 463 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
PC + KK G GR F++CAR GP+ E N C F W
Sbjct: 237 PCKTMLTKKSGMNCGRSFWMCARPLGPSGAKEKNTQWRCPTFIW 280
>gi|392401590|ref|YP_006438202.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
gi|390609544|gb|AFM10696.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
Length = 270
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 113
+R+ GDLN+A ID + F R W ++ ++ + DVFRS++PE
Sbjct: 157 KRVLFTGDLNVAHNPIDLARPKENEKHVGFLPEERAWVDRLVADN---WVDVFRSRYPET 213
Query: 114 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
+YT W + A + N G RID+ + P + +++ N
Sbjct: 214 -VSYTWWQMQSRARERNIGWRIDYFIVDKPLYPKVREIRHLN 254
>gi|71989536|ref|NP_001021584.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3879014|emb|CAB03235.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3941298|gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans]
Length = 288
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 50/167 (29%)
Query: 49 RWEFLLCQGRR-------IFVVGDLNIAPAAIDRCDAGPDFAK-----NEFRIWFRSMLV 96
RWE LL + + + GDLN+A ID + + K ++ R WF ML
Sbjct: 158 RWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWFSEML- 216
Query: 97 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 156
E G F D FR+ HP+ ++ Y+ W + Q + G R+D+ + + N
Sbjct: 217 ELG--FTDTFRAMHPDEKK-YSFWSYLANSRQKDVGWRLDYYVVS-------------NR 260
Query: 157 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ V DI+ + + GSDHAPV M +
Sbjct: 261 IMNKVKRSDIM---------------------SSVMGSDHAPVVMQI 286
>gi|410026255|gb|AFV52283.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 190
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 490
PLC+GH EPC + KK G GR F++CAR GP+
Sbjct: 155 PLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPS 190
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 48 YRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGS 101
YR EFL L + + GD N+A ID + + F R F S+L G
Sbjct: 134 YR-EFLVGLDAQKPVITCGDFNVAHQEIDLKNPASNHENAGFSDEERAGFSSLL---GAG 189
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
F D FRS HP AY+ W + + N G RID+ L +
Sbjct: 190 FTDTFRSAHPTLEGAYSWWSYRMRSRERNAGWRIDYFLVS 229
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSK 109
L + + + + GDLN A ID D D NE R F + + G F D FR +
Sbjct: 375 LEKSKPVILTGDLNCAHQEIDIHDPAGDRRSAGFTNEERESFGTNFLSKG--FVDTFRKQ 432
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
HP AY+ W A + N G R+D+ L + + HD
Sbjct: 433 HPNVV-AYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 472
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+L++N +F S + L + + + + GD+N+A ID + + F R
Sbjct: 204 RLQWNEAFKSYVKQ-----LDEKKPVIICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREG 258
Query: 95 LVE-SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ + F D FRS +P++ AYT W A N G R+D+ L +
Sbjct: 259 MTDFLAAGFVDTFRSLYPDKTGAYTFWSYFANARSKNIGWRLDYFLVS 306
>gi|30171182|gb|AAO37758.1| DNA lyase [Leptosphaeria maculans]
gi|30171187|gb|AAO37762.1| DNA lyase [Leptosphaeria maculans]
Length = 337
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 40/200 (20%)
Query: 305 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 364
E R SA+ + T+ + SN+ P K GQ SLK FF RS
Sbjct: 165 EKRRASASASPGKTLKRSKSNN--PVAGSNPTK-------GQQSLKGFFLTRSKP----- 210
Query: 365 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 424
T+ S +++E P S + +P D S G S +
Sbjct: 211 --------------TEPSPTKDEAPLSVPSTPAVPTGDPSS--QSATGAPDLSVSQTSET 254
Query: 425 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 484
+E + + W ++ + P C+ H EPC+ KKPG GR+F++C
Sbjct: 255 YDPDPLATQEASRES---WSKL--FSKKPTPRCE-HGEPCITLTTKKPGMNCGRQFYMCP 308
Query: 485 RAEGPASNPEAN----CGYF 500
R GP+ E CG
Sbjct: 309 RPIGPSGQKETGTQWRCGTI 328
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ + GDLN+A ID R +AG D +N+ + L+ESG F D FR +P
Sbjct: 139 VILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKM-----TELLESG--FTDSFRYLYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
E+ +Y+ W A + N G RID+ + + + D Q H
Sbjct: 192 EKEGSYSWWSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIH 234
>gi|114596997|ref|XP_526741.2| PREDICTED: endonuclease 8-like 3 [Pan troglodytes]
gi|410220682|gb|JAA07560.1| nei endonuclease VIII-like 3 [Pan troglodytes]
gi|410352469|gb|JAA42838.1| nei endonuclease VIII-like 3 [Pan troglodytes]
Length = 606
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 506 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + + V K GP G+
Sbjct: 525 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRSIMKTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>gi|393774029|ref|ZP_10362409.1| exodeoxyribonuclease III Xth [Novosphingobium sp. Rr 2-17]
gi|392720530|gb|EIZ78015.1| exodeoxyribonuclease III Xth [Novosphingobium sp. Rr 2-17]
Length = 270
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 40/158 (25%)
Query: 53 LLCQGRRIFVVGDLNIAPAAID--RCDAGPD---FAKNEFRIWFRSMLVESGGSFFDVFR 107
LL G + ++GD N+ P D R + D FA +FR L++ G + D R
Sbjct: 135 LLATGMPVMIIGDFNVMPTEQDVRRPERWLDDALFAPEVRAAYFR--LIDQG--WTDALR 190
Query: 108 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 167
+ HP+ YT W GA + N G RIDH+L + + D Q V HV
Sbjct: 191 TVHPDE-TIYTFWKYFRGAFERNDGLRIDHLLLSPSLADRLVDAQ----VDRHV------ 239
Query: 168 IDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+G T SDHAPV++ L +
Sbjct: 240 ----------------RGWEKT----SDHAPVWVALAD 257
>gi|422431651|ref|ZP_16508523.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA2]
gi|422509801|ref|ZP_16585955.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA1]
gi|313816882|gb|EFS54596.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA1]
gi|315100096|gb|EFT72072.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA2]
Length = 317
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 175 KMAFLTGFRDHLVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQW 234
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 235 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 289
>gi|444721734|gb|ELW62452.1| Endonuclease 8-like 3 [Tupaia chinensis]
Length = 416
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C + EA CG+F+WA
Sbjct: 316 PRCSKHNRLCVLRVVRKDGENKGRQFYACPLPK------EAQCGFFEWA 358
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L KE EW + S P C H + + R V K GP G+
Sbjct: 335 ENKGRQFYACPLPKEAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 386
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 387 FFVCPLGK------EKQCNFFQWA 404
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GDLN+A ID R +AG +E R F ++L ESG F D F
Sbjct: 134 LEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAG---FTDEERAKFTTLL-ESG--FTDTF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
R +PE+ Y+ W A + N G RID+ L + + Q H
Sbjct: 188 RYFYPEQEGIYSWWSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIH 235
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 134 LEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKF-----TTLLESG--FTDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +PE+ Y+ W A + N G RID+ L +
Sbjct: 187 FRYFYPEQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|421852672|ref|ZP_16285358.1| exodeoxyribonuclease III [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479176|dbj|GAB30561.1| exodeoxyribonuclease III [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 261
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSML 95
L F S++ R LL + + GD NI PA ID GP+ + + R +R +L
Sbjct: 120 LEFLSALTARARLLLAEETDFALAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLL 179
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
D R+ HP AYT W A + + G RIDH+L +
Sbjct: 180 WL---GLTDALRALHPT-GAAYTFWDYQARAWERDCGLRIDHMLLS 221
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 112
L + + + + GDLN+A ID + + + F R+ + E F D FR +PE
Sbjct: 133 LDKDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSELLNAGFIDTFRYFYPE 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A + N G RID+ + +
Sbjct: 193 KEGAYTWWSYINKARERNIGWRIDYFIAS 221
>gi|222823091|ref|YP_002574664.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
gi|222538312|gb|ACM63413.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
Length = 252
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL +G+ I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYNDFLVYLDKLLKEGKEIIICGDVNTAHREIDLTHPKANEKTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L E G F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL-ELG--FVDTFRYVNGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID + + F R+ L E F D FR +P+ AYT
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTELLNAGFIDTFRYFYPDTEGAYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
W T A + N G RID+ L + + D + H
Sbjct: 199 WWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIH 234
>gi|384918580|ref|ZP_10018651.1| exodeoxyribonuclease III [Citreicella sp. 357]
gi|384467500|gb|EIE51974.1| exodeoxyribonuclease III [Citreicella sp. 357]
Length = 259
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFR 92
++ L++ + R LL + GD N+ P A D + R FR
Sbjct: 121 DYKLAWMRRLETRARLLLADEMPAIMAGDYNVIPQAEDAAKPAAWTEDALYLPQTRAAFR 180
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+L F D FR++HP Y+ W GA Q N G RIDH+L
Sbjct: 181 RIL---NLGFTDAFRTRHPGAGH-YSFWDYQAGAWQRNNGIRIDHLLL 224
>gi|294677951|ref|YP_003578566.1| exodeoxyribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294476771|gb|ADE86159.1| exodeoxyribonuclease III-1 [Rhodobacter capsulatus SB 1003]
Length = 259
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+ ++ L++ + M R E LL + GD N+ P D R DA A E
Sbjct: 119 KYDYKLAWMARMQARVETLLRSEEPLVFAGDYNVIPQDEDAAKPESWRADA---LALPET 175
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R FR +V G D FR++ P + Y+ W GA Q N G RIDH+L +
Sbjct: 176 RAAFRR-IVNLG--LTDAFRARVPGPGQ-YSFWDYQAGAWQKNNGIRIDHLLLS 225
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 38/174 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVV-GDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 93
+L++ L + +R L G++ VV GDLN+A ID +A + + F R
Sbjct: 115 RLDYRLEWEDR--FRNYLLQLDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEERE 172
Query: 94 MLVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ F D +R +P++ +AYT W + N G RID+ L +
Sbjct: 173 KMTSLLAAGFVDTYRYFYPDQTDAYTWWSFMPKVRERNIGWRIDYFLAS----------- 221
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206
+R P + G+ +++ GSDH PV + LG +
Sbjct: 222 ------------------ERLAPALL-----RAGIDSQVMGSDHCPVVLELGTI 252
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 40/172 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
+L + L F +++ + L + ++I + GD NIA ID +A + + F R +
Sbjct: 118 RLNYKLEFYDALFEYLDKLKIEDKKIIICGDYNIAHREIDIKNAKANEKISGFLPIERKL 177
Query: 95 L---VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
+ + G + D FRS H E + Y+ W A + N G RID+ L L
Sbjct: 178 IDKFISKG--YVDTFRSIHREEIK-YSWWSYRFKARERNAGWRIDYFLVTENLLE----- 229
Query: 152 QSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+V E DIL D + GSDH PV + L
Sbjct: 230 --------NVKEADILND---------------------VMGSDHCPVSILL 252
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + + S+L+ESG F D
Sbjct: 133 LNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SVLLESG--FIDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +PE+ Y+ W A + N G RID+ L +
Sbjct: 186 FRYLYPEQEGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|332285653|ref|YP_004417564.1| catabolite repression control protein [Pusillimonas sp. T7-7]
gi|330429606|gb|AEC20940.1| catabolite repression control protein [Pusillimonas sp. T7-7]
Length = 260
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 112
GR++ + GD NIA ID + + + F R W + E G + DV+RS +P+
Sbjct: 141 GRQVVLCGDWNIAHQEIDLKNWKGNLKNSGFLPEERAWLTRVFDEIG--WVDVYRSLYPD 198
Query: 113 RR-EAYTCWPSNTGAEQFNYGTRIDHILCA 141
EAYT W + A N G RID+ + +
Sbjct: 199 ATGEAYTWWSNRGQAWAKNVGWRIDYQIAS 228
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LEKKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 118
+ V GD+N+A ID + + F R+ + E S F D FR+ +PE ++AY+
Sbjct: 141 VIVCGDMNVAHEEIDIKNPSANRRNAGFTDEERAKMTELLASGFIDTFRTLNPELKDAYS 200
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
W A + N G RID+ L + + D + H
Sbjct: 201 WWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIH 236
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 60 IFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 114
+ + GDLN+A ID + P F + E R F ++L G F D FR +P+
Sbjct: 188 VVLCGDLNVAHREIDLRNPKSNRRSPGFTQEE-RDAFGALL---DGGFLDSFRLLYPDVP 243
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AYT W GA + N G R+D+ L +
Sbjct: 244 NAYTFWTYMGGARERNVGWRLDYFLLS 270
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 41/171 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFR 92
+L+F L F++ + + L + + + + GD NIA ID + P + R WF
Sbjct: 115 RLDFKLKFNNEIE-NFVLKLRKAKPVILCGDFNIAHQNIDGAFSNPTIPGLTPQERSWFS 173
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
L F D FR HP R+ Y+ W A N G R+D+ + + +L+
Sbjct: 174 HFL---SLGFIDTFRYLHPNVRK-YSWWSYMGKARDKNLGLRLDYCIVS-------EELK 222
Query: 153 SHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
+ DILID ++GSDHAP+ + L
Sbjct: 223 DR------IKMADILID---------------------IQGSDHAPIILEL 246
>gi|393719244|ref|ZP_10339171.1| exodeoxyribonuclease III Xth [Sphingomonas echinoides ATCC 14820]
Length = 256
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+ ++ L + + R LL + + + GD N+ P D R + E R
Sbjct: 117 KFDYKLRWIDRLAARARDLLAEETPVVLAGDYNVIPNDDDTYSVRAMQDDALMQPESRAG 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR++L + + D R++HP +T W GA Q + G RIDH+L +
Sbjct: 177 FRALLAQG---WTDALRTRHPGG-GVWTFWDYQAGAWQRDAGFRIDHLLLS 223
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ GDLN+A ID R +AG D + +F S+L+E+G F D FR +P
Sbjct: 139 VIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKF-----SVLLENG--FIDTFRYFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+ ++AY+ W A + N G RID+ L + P L ++
Sbjct: 192 DLKDAYSWWSYRFHAREKNAGWRIDYFLVS-PQLKER 227
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
FR +P+ AY+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH 234
>gi|19684059|gb|AAH25954.1| Nei endonuclease VIII-like 3 (E. coli) [Homo sapiens]
Length = 605
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|348511841|ref|XP_003443452.1| PREDICTED: endonuclease 8-like 3-like [Oreochromis niloticus]
Length = 578
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 29/191 (15%)
Query: 318 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 377
++ QG++ SP + +K + SL S+ H + I + NN+
Sbjct: 400 SVCQGTT---SPNYASGGWQKQRAELSDGESLASYSHPSKKMR------IDHSPFPSNNA 450
Query: 378 VTDTSLSQEEVPESHHHSNKIPVTDYS--CSVHELHGVNSSVCSHDQDEKKGKRFLD--- 432
T S E+ + IP++ + C+ H V V H + E KG++F
Sbjct: 451 QNGTPNSSTHKMEATSRATSIPLSPSAPRCASHRRPAVLRVV--HKEGENKGRQFYSCSL 508
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
EW + P C H + C+ R V K GP GR F+ C+ +G
Sbjct: 509 PRDTKCNFFEWADLH------FPFCH-HGKRCLMRTVLKLGPNNGRNFYTCSFQKG---- 557
Query: 493 PEANCGYFKWA 503
C +F+WA
Sbjct: 558 --KQCDFFQWA 566
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID + + F R L E G F D FR+ +P+ AYT
Sbjct: 144 VVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKLTELLGAGFIDTFRALYPDLTGAYT 203
Query: 119 CWPSNTGAEQFNYGTRIDHILCA 141
W A + N G RID+ L +
Sbjct: 204 WWSYLRHARETNAGWRIDYFLVS 226
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHP 111
+L Q + + V GDLN+A A ID + + + F R + G F D FR +P
Sbjct: 135 MLDQQKSVIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEERGKMTRLLGEGFSDTFRHFYP 194
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
E + YT W + N G RID+ + + D + H
Sbjct: 195 ELTDKYTWWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIH 237
>gi|282855240|ref|ZP_06264572.1| exodeoxyribonuclease III [Propionibacterium acnes J139]
gi|422391207|ref|ZP_16471300.1| exodeoxyribonuclease III [Propionibacterium acnes HL103PA1]
gi|422464136|ref|ZP_16540747.1| exodeoxyribonuclease III [Propionibacterium acnes HL060PA1]
gi|422467379|ref|ZP_16543932.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA4]
gi|422468113|ref|ZP_16544648.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA3]
gi|422566436|ref|ZP_16642070.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA2]
gi|422575155|ref|ZP_16650699.1| exodeoxyribonuclease III [Propionibacterium acnes HL001PA1]
gi|282581828|gb|EFB87213.1| exodeoxyribonuclease III [Propionibacterium acnes J139]
gi|314924052|gb|EFS87883.1| exodeoxyribonuclease III [Propionibacterium acnes HL001PA1]
gi|314965024|gb|EFT09123.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA2]
gi|314983099|gb|EFT27191.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090643|gb|EFT62619.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA4]
gi|315093843|gb|EFT65819.1| exodeoxyribonuclease III [Propionibacterium acnes HL060PA1]
gi|327326466|gb|EGE68255.1| exodeoxyribonuclease III [Propionibacterium acnes HL103PA1]
Length = 297
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
++ F F + R + QGR V+GD NIA D + + + E R W
Sbjct: 155 KMAFLAGFRDHLVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQHNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|109076256|ref|XP_001090459.1| PREDICTED: nei endonuclease VIII-like 3 [Macaca mulatta]
Length = 602
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 502 PRCSKHSRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 544
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+LE+ +++ + + ++ L + + + GDLN+A ID R +AG F E
Sbjct: 123 RLEYRMTWEDA-FLKYILELEKNKPVIFCGDLNVAHTEIDLKNPKTNRKNAG--FTDEER 179
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
M V F D FR +P++ +AY+ W GA N G RID+ + + +
Sbjct: 180 A----KMDVILSSGFVDSFRVLYPDKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDR 235
Query: 148 KHDLQSHN 155
+ + H+
Sbjct: 236 IKEAKIHS 243
>gi|332255198|ref|XP_003276719.1| PREDICTED: endonuclease 8-like 3 [Nomascus leucogenys]
Length = 606
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 506 PRCSKHNHLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + + V K GP G+
Sbjct: 525 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRSIMKTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>gi|83699625|gb|ABC40719.1| nei endonuclease VIII-like 3 (E. coli) [Homo sapiens]
Length = 606
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 506 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 548
>gi|426346069|ref|XP_004040711.1| PREDICTED: endonuclease 8-like 3 [Gorilla gorilla gorilla]
Length = 606
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 506 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + + V K GP G+
Sbjct: 525 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRSIMKTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>gi|383419663|gb|AFH33045.1| endonuclease 8-like 3 [Macaca mulatta]
Length = 602
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 502 PRCSKHSRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 544
>gi|22004059|dbj|BAC06479.1| hypothetical protein [Homo sapiens]
gi|119625121|gb|EAX04716.1| nei endonuclease VIII-like 3 (E. coli) [Homo sapiens]
Length = 605
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L Q + + + GD+N+A ID R +AG D +++ + L+E+G F D
Sbjct: 133 LDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P++ +AYT W A N G RID+ L +
Sbjct: 186 FRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|419419784|ref|ZP_13960017.1| exodeoxyribonuclease III [Propionibacterium acnes PRP-38]
gi|422395681|ref|ZP_16475714.1| exodeoxyribonuclease III [Propionibacterium acnes HL097PA1]
gi|327333158|gb|EGE74885.1| exodeoxyribonuclease III [Propionibacterium acnes HL097PA1]
gi|379979505|gb|EIA12825.1| exodeoxyribonuclease III [Propionibacterium acnes PRP-38]
Length = 297
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 155 KMAFLTGFRDHLVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|422458913|ref|ZP_16535562.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA2]
gi|315104061|gb|EFT76037.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA2]
Length = 297
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
++ F F + R + QGR V+GD NIA D + + + E R W
Sbjct: 155 KMAFLAGFRDHLVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQHNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|422439016|ref|ZP_16515853.1| exodeoxyribonuclease III [Propionibacterium acnes HL092PA1]
gi|422525097|ref|ZP_16601105.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA2]
gi|422530381|ref|ZP_16606341.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA1]
gi|313794091|gb|EFS42113.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA1]
gi|315077107|gb|EFT49182.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA2]
gi|327451399|gb|EGE98053.1| exodeoxyribonuclease III [Propionibacterium acnes HL092PA1]
Length = 297
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 155 KMAFLTGFRDHLVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GD+N+A ID R +AG D +N+F + L+++G F D
Sbjct: 133 LNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNKF-----TELLQAG--FTDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
FR +P+ AY+ W A + N G RID+ + + Q + + H
Sbjct: 186 FRYLYPDTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|344288267|ref|XP_003415872.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease 8-like 3-like
[Loxodonta africana]
Length = 601
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 501 PRCSKHNRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 543
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + R V K GP GR
Sbjct: 520 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGRN 571
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 572 FFVCPLGK------EKQCNFFQWA 589
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID R +AG F+ E R F ML E F D FR HP+
Sbjct: 140 VVLCGDLNVAHQEIDLKNPKANRKNAG--FSDQE-RERFSQMLEEG---FIDTFRYLHPD 193
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AY+ W A N G R+D+ + +
Sbjct: 194 QEGAYSWWSYRMNARAKNVGWRLDYFIVS 222
>gi|42525008|ref|NP_970388.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
gi|39577219|emb|CAE81042.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
Length = 257
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F L F ++ R + L +GR + + GD NIA ID + + F R W
Sbjct: 120 RLPFKLEFCAAAEKRLQALRKKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAW 179
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
L + D FR K + E YT W G + N G R+D+ L
Sbjct: 180 MTRFL--DKLEWVDSFR-KFEQGPEHYTWWSYRPGVREKNIGWRLDYFLV 226
>gi|393722627|ref|ZP_10342554.1| exodeoxyribonuclease III Xth [Sphingomonas sp. PAMC 26605]
Length = 256
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 38/173 (21%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+ ++ L + + R LL + + + GD N+ P D R + E R
Sbjct: 117 KFDYKLRWIDRLAKRARDLLAEELPVVLAGDYNVIPNDDDTYSVRAMQTDALMQPESRAG 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
FR++L + + D R++HP +T W GA Q + G RIDH+L + P
Sbjct: 177 FRTLLAQG---WTDALRTRHPGG-GVWTFWDYQAGAWQRDAGFRIDHLLLS-PI------ 225
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
D LID G YR R + SDHAP + L
Sbjct: 226 ------------AADRLID-----AGVDKDYR------AREKASDHAPTWATL 255
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + V GDLN+A ID R +AG F+ E R FR +L D F
Sbjct: 184 LMQKKAVVVCGDLNVAHNEIDLTNPQSNRYNAG--FSDPE-RDAFRQLL---NLGLIDTF 237
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P + E+YT W A N G RID+ L +
Sbjct: 238 RHFYPTKAESYTWWSYINQARAKNIGWRIDYFLTS 272
>gi|7023157|dbj|BAA91860.1| unnamed protein product [Homo sapiens]
Length = 605
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 46 MYYRWEFL-----LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRS 93
M + EFL L + + + + GDLN+A ID R +AG +E R F
Sbjct: 120 MIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAG---FTDEERAKFSE 176
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L F D FR +P+++EAYT W A N G RID+ C L
Sbjct: 177 LL---KNGFIDTFRHFNPDKKEAYTWWSYMFNARANNAGWRIDY-FCVSESL 224
>gi|395735518|ref|XP_003776598.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease 8-like 3 [Pongo
abelii]
Length = 585
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 485 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 527
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + C+ R V K GP G+
Sbjct: 504 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRCIMRTVLKIGPNNGKN 555
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 556 FFVCPFGK------EKQCNFFQWA 573
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L Q + + + GD+N+A ID R +AG D +++ + L+E+G F D
Sbjct: 133 LDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P++ +AYT W A N G RID+ L +
Sbjct: 186 FRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|157388969|ref|NP_060718.2| endonuclease 8-like 3 [Homo sapiens]
Length = 605
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|159044435|ref|YP_001533229.1| putative Exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
gi|157912195|gb|ABV93628.1| putative Exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
Length = 259
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD------FAKNEFR 88
+ ++ L++ + + R LL + GD NI P +D A P+ A R
Sbjct: 119 KYDYKLAWMARLKTRAAELLAAEEPALMAGDYNIIP--LDEDAARPEAWRKDALALPASR 176
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
FR +L F D FR++ P Y+ W GA Q N G RIDHIL C
Sbjct: 177 AAFREIL---NLGFTDAFRTRVPGPGH-YSFWDYQAGAWQRNDGIRIDHILMTPDCADLM 232
Query: 149 HD 150
D
Sbjct: 233 RD 234
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 46 MYYRWEFL-----LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRS 93
M + EFL L + + + + GDLN+A ID R +AG +E R F
Sbjct: 120 MIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAG---FTDEERAKFSE 176
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L F D FR +P+++EAYT W A N G RID+ C L
Sbjct: 177 LL---KNGFIDTFRHFNPDKKEAYTWWSYMFNARANNAGWRIDY-FCVSESL 224
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 47/155 (30%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GDLN+A ID R +AG F E S+L++SG F D F
Sbjct: 133 LNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDQEREK--MSILLDSG--FTDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 166
R +P++ Y+ W + + N G RID+ L + + D Q H
Sbjct: 187 RYFYPDKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQ----------- 235
Query: 167 LIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
R+ GSDH PVY+
Sbjct: 236 -----------------------RILGSDHCPVYL 247
>gi|258543182|ref|YP_003188615.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|384043104|ref|YP_005481848.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-12]
gi|384051621|ref|YP_005478684.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-03]
gi|384054728|ref|YP_005487822.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-07]
gi|384057963|ref|YP_005490630.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-22]
gi|384060604|ref|YP_005499732.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-26]
gi|384063896|ref|YP_005484538.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-32]
gi|384119905|ref|YP_005502529.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634260|dbj|BAI00236.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|256637320|dbj|BAI03289.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-03]
gi|256640372|dbj|BAI06334.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-07]
gi|256643429|dbj|BAI09384.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-22]
gi|256646484|dbj|BAI12432.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-26]
gi|256649537|dbj|BAI15478.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-32]
gi|256652523|dbj|BAI18457.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655581|dbj|BAI21508.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-12]
Length = 261
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSML 95
L F S++ R LL + + GD NI PA ID GP+ + + R +R +L
Sbjct: 120 LEFLSALTGRARLLLAEETDFALAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLL 179
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
D R+ HP AYT W A + + G RIDH+L +
Sbjct: 180 WL---GLTDALRALHPT-GAAYTFWDYQARAWERDCGLRIDHMLLS 221
>gi|394989998|ref|ZP_10382830.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
gi|393790263|dbj|GAB72469.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
Length = 259
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L +G+ + + GD NIA ID + + + F R W + E G + D++R
Sbjct: 136 LKAEGQEVVLCGDWNIAHKEIDLKNWKSNQKNSGFLPAERTWMTKVFDELG--WVDIYRQ 193
Query: 109 KHPERR-EAYTCWPSNTGAEQFNYGTRIDHILC 140
HPE EAYT W + A N G RID+ +
Sbjct: 194 LHPEATGEAYTWWSNRGQAWAKNVGWRIDYQIA 226
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D + F S L+E+G + D
Sbjct: 134 LDKKKPVILCGDLNVAHQEIDLKNPKANRKNAGFSDQERGAF-----SRLLEAG--YVDS 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
FR +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 187 FRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>gi|289424786|ref|ZP_06426568.1| exodeoxyribonuclease III [Propionibacterium acnes SK187]
gi|289427574|ref|ZP_06429286.1| exodeoxyribonuclease III [Propionibacterium acnes J165]
gi|295131421|ref|YP_003582084.1| exodeoxyribonuclease III [Propionibacterium acnes SK137]
gi|342213286|ref|ZP_08706011.1| putative exodeoxyribonuclease III [Propionibacterium sp. CC003-HC2]
gi|354607610|ref|ZP_09025579.1| exodeoxyribonuclease III [Propionibacterium sp. 5_U_42AFAA]
gi|365963537|ref|YP_004945103.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965781|ref|YP_004947346.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974716|ref|YP_004956275.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024831|ref|YP_005943136.1| exodeoxyribonuclease III [Propionibacterium acnes 266]
gi|407936277|ref|YP_006851919.1| exodeoxyribonuclease III [Propionibacterium acnes C1]
gi|417929912|ref|ZP_12573292.1| putative exodeoxyribonuclease III [Propionibacterium acnes SK182]
gi|422385746|ref|ZP_16465873.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA3]
gi|422388765|ref|ZP_16468865.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA2]
gi|422391571|ref|ZP_16471654.1| exodeoxyribonuclease III [Propionibacterium acnes HL099PA1]
gi|422425349|ref|ZP_16502285.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA1]
gi|422428779|ref|ZP_16505689.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA1]
gi|422429553|ref|ZP_16506456.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA2]
gi|422434394|ref|ZP_16511253.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA2]
gi|422443869|ref|ZP_16520666.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA1]
gi|422444696|ref|ZP_16521477.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA1]
gi|422448549|ref|ZP_16525275.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA3]
gi|422450990|ref|ZP_16527696.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA2]
gi|422453659|ref|ZP_16530349.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA3]
gi|422461135|ref|ZP_16537768.1| exodeoxyribonuclease III [Propionibacterium acnes HL038PA1]
gi|422475030|ref|ZP_16551493.1| exodeoxyribonuclease III [Propionibacterium acnes HL056PA1]
gi|422477451|ref|ZP_16553879.1| exodeoxyribonuclease III [Propionibacterium acnes HL007PA1]
gi|422478738|ref|ZP_16555153.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA1]
gi|422483727|ref|ZP_16560115.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA1]
gi|422484798|ref|ZP_16561167.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA2]
gi|422486952|ref|ZP_16563294.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA2]
gi|422489976|ref|ZP_16566300.1| exodeoxyribonuclease III [Propionibacterium acnes HL020PA1]
gi|422493811|ref|ZP_16570108.1| exodeoxyribonuclease III [Propionibacterium acnes HL086PA1]
gi|422496588|ref|ZP_16572872.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA1]
gi|422496916|ref|ZP_16573194.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA3]
gi|422500553|ref|ZP_16576808.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA2]
gi|422501883|ref|ZP_16578131.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA2]
gi|422505243|ref|ZP_16581475.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA2]
gi|422507426|ref|ZP_16583624.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA2]
gi|422513039|ref|ZP_16589164.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA2]
gi|422515731|ref|ZP_16591841.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA2]
gi|422517812|ref|ZP_16593887.1| exodeoxyribonuclease III [Propionibacterium acnes HL074PA1]
gi|422520947|ref|ZP_16596987.1| exodeoxyribonuclease III [Propionibacterium acnes HL045PA1]
gi|422525180|ref|ZP_16601184.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA1]
gi|422528771|ref|ZP_16604747.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA1]
gi|422534009|ref|ZP_16609937.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA1]
gi|422538153|ref|ZP_16614032.1| exodeoxyribonuclease III [Propionibacterium acnes HL078PA1]
gi|422540738|ref|ZP_16616603.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA1]
gi|422540974|ref|ZP_16616833.1| exodeoxyribonuclease III [Propionibacterium acnes HL037PA1]
gi|422544841|ref|ZP_16620676.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA1]
gi|422547288|ref|ZP_16623109.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA3]
gi|422548734|ref|ZP_16624544.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA1]
gi|422553242|ref|ZP_16629028.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA3]
gi|422553675|ref|ZP_16629451.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA2]
gi|422556672|ref|ZP_16632423.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA2]
gi|422558900|ref|ZP_16634630.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA1]
gi|422563779|ref|ZP_16639454.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA1]
gi|422568226|ref|ZP_16643845.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA2]
gi|422570255|ref|ZP_16645859.1| exodeoxyribonuclease III [Propionibacterium acnes HL067PA1]
gi|422579590|ref|ZP_16655109.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA4]
gi|289154749|gb|EFD03432.1| exodeoxyribonuclease III [Propionibacterium acnes SK187]
gi|289159065|gb|EFD07257.1| exodeoxyribonuclease III [Propionibacterium acnes J165]
gi|291377273|gb|ADE01128.1| exodeoxyribonuclease III [Propionibacterium acnes SK137]
gi|313763084|gb|EFS34448.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA1]
gi|313773022|gb|EFS38988.1| exodeoxyribonuclease III [Propionibacterium acnes HL074PA1]
gi|313802417|gb|EFS43642.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA2]
gi|313807850|gb|EFS46334.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA2]
gi|313812037|gb|EFS49751.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA1]
gi|313812136|gb|EFS49850.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA1]
gi|313819198|gb|EFS56912.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA2]
gi|313819763|gb|EFS57477.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA1]
gi|313823880|gb|EFS61594.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA2]
gi|313827241|gb|EFS64955.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA1]
gi|313828429|gb|EFS66143.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA2]
gi|313831114|gb|EFS68828.1| exodeoxyribonuclease III [Propionibacterium acnes HL007PA1]
gi|313833483|gb|EFS71197.1| exodeoxyribonuclease III [Propionibacterium acnes HL056PA1]
gi|313838117|gb|EFS75831.1| exodeoxyribonuclease III [Propionibacterium acnes HL086PA1]
gi|314914557|gb|EFS78388.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA4]
gi|314919199|gb|EFS83030.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA1]
gi|314920633|gb|EFS84464.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA3]
gi|314925728|gb|EFS89559.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA3]
gi|314931457|gb|EFS95288.1| exodeoxyribonuclease III [Propionibacterium acnes HL067PA1]
gi|314957017|gb|EFT01123.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA1]
gi|314957831|gb|EFT01934.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA1]
gi|314960672|gb|EFT04773.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA2]
gi|314963372|gb|EFT07472.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA1]
gi|314969733|gb|EFT13831.1| exodeoxyribonuclease III [Propionibacterium acnes HL037PA1]
gi|314974296|gb|EFT18392.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA1]
gi|314976933|gb|EFT21028.1| exodeoxyribonuclease III [Propionibacterium acnes HL045PA1]
gi|314979892|gb|EFT23986.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA2]
gi|314985810|gb|EFT29902.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA1]
gi|314988407|gb|EFT32498.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA2]
gi|314988831|gb|EFT32922.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA3]
gi|315079798|gb|EFT51774.1| exodeoxyribonuclease III [Propionibacterium acnes HL078PA1]
gi|315084894|gb|EFT56870.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA2]
gi|315087238|gb|EFT59214.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA3]
gi|315088971|gb|EFT60947.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA1]
gi|315096818|gb|EFT68794.1| exodeoxyribonuclease III [Propionibacterium acnes HL038PA1]
gi|315100579|gb|EFT72555.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA1]
gi|315109351|gb|EFT81327.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA2]
gi|327325640|gb|EGE67438.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA2]
gi|327328234|gb|EGE70001.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA3]
gi|327445310|gb|EGE91964.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA1]
gi|327446951|gb|EGE93605.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA2]
gi|327449053|gb|EGE95707.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA2]
gi|327452601|gb|EGE99255.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA3]
gi|327457644|gb|EGF04299.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA2]
gi|328751915|gb|EGF65531.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA1]
gi|328756939|gb|EGF70555.1| exodeoxyribonuclease III [Propionibacterium acnes HL020PA1]
gi|328759048|gb|EGF72664.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA2]
gi|328762251|gb|EGF75743.1| exodeoxyribonuclease III [Propionibacterium acnes HL099PA1]
gi|332676289|gb|AEE73105.1| exodeoxyribonuclease III [Propionibacterium acnes 266]
gi|340768830|gb|EGR91355.1| putative exodeoxyribonuclease III [Propionibacterium sp. CC003-HC2]
gi|340772599|gb|EGR95100.1| putative exodeoxyribonuclease III [Propionibacterium acnes SK182]
gi|353556629|gb|EHC25999.1| exodeoxyribonuclease III [Propionibacterium sp. 5_U_42AFAA]
gi|365740218|gb|AEW84420.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742462|gb|AEW82156.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744715|gb|AEW79912.1| exodeoxyribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904858|gb|AFU41688.1| exodeoxyribonuclease III [Propionibacterium acnes C1]
gi|456738981|gb|EMF63548.1| exodeoxyribonuclease III [Propionibacterium acnes FZ1/2/0]
Length = 297
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 155 KMAFLTGFRDHLVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + GDLN+A ID R +AG F E R + F D F
Sbjct: 136 LDQKKPLIYCGDLNVAHEEIDLKNPSTNRRNAG--FTDEEREKMTRVLT----NGFVDSF 189
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R HPE ++AY+ W A + N G RID+ + +
Sbjct: 190 RYLHPEEKDAYSWWSYRMKARERNVGWRIDYFIVS 224
>gi|89902688|ref|YP_525159.1| exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
gi|89347425|gb|ABD71628.1| exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
Length = 263
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 109
L GR + GD+NIA ID + + + F R W +L E+G DV+R
Sbjct: 141 LKNGREFILCGDVNIAHQEIDLKNWKGNRKNSGFLPEERAWMTKLLTEAG--LVDVYRQL 198
Query: 110 HPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
P EAYT W + A N G R+D+ L A P +
Sbjct: 199 QPTATDEAYTWWSNRGQAYAKNVGWRLDYHL-ATPAM 234
>gi|358639330|dbj|BAL26627.1| exodeoxyribonuclease III [Azoarcus sp. KH32C]
Length = 263
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----R 88
R+Q++F F L GR + V GD NIA +D + + + F R
Sbjct: 119 RLQIKFG--FMERFLPHMAALRASGREVIVCGDWNIAHKEVDLKNWKSNQKNSGFLPEER 176
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREA-YTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
W ++ E G + DV+R HP+ +A YT W + A N G R+D+ + H
Sbjct: 177 AWLTRVIDEQG--WVDVYRRLHPDTTDACYTWWSNRGQAWAKNVGWRLDYQIATPGVAH 233
>gi|301778739|ref|XP_002924787.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease VIII-like 3-like
[Ailuropoda melanoleuca]
Length = 603
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H CV RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 503 PRCNKHNRLCVLRVVRKDGENKGRQFYACPLPR------EAQCGFFQWA 545
>gi|118090127|ref|XP_426306.2| PREDICTED: endonuclease 8-like 3 [Gallus gallus]
Length = 611
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
Q + S P C H + CV ++V K GP GR FFVC + E CG+F+WA +K
Sbjct: 553 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVCPLQK------EKQCGFFQWAENK 604
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
T P C H C R+V+K G GR F+ C PE C YF+WA
Sbjct: 510 TGPPHCSKHGHLCKLRIVRKDGENKGRMFYSCPLP------PETQCNYFQWA 555
>gi|374584780|ref|ZP_09657872.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
gi|373873641|gb|EHQ05635.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
Length = 346
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
++E+ L+F W+ +G+RI + GD N A ID + F R+
Sbjct: 209 RVEYKLAFYEHCLDLWQKTRSEGKRIIITGDYNTAHKEIDLARPKENSKVTGFLPEERAF 268
Query: 95 L--VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
L +ES G + D+FR ++ E YT W T A + N G RID+ + L
Sbjct: 269 LDKMESLG-YIDIFR-RYDASPEKYTYWDQFTRARERNAGWRIDYFWISEETL 319
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID R +AG F E ++L+ SG F D FR +P+
Sbjct: 142 VILCGDLNVAHQEIDIKNPAANRRNAG--FTDEEREK--MTILLNSG--FIDTFRYFYPD 195
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
+++AYT W A + N G R+D+ + + D Q H+ V
Sbjct: 196 KKDAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEV 240
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+LE+ +SF + L +G+R+ + GD+N A +D + + F R W
Sbjct: 122 RLEYKMSFYEAFLDYANSLKAEGKRLVICGDVNTAHKELDLARPKQNETISGFLPEERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
L + D FR +PE Y+ W TGA + N G R+D+ +
Sbjct: 182 MDKFLA---AGYLDTFRMFNPEGGN-YSWWSMRTGARKRNVGWRLDYFFVS 228
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID R +AG F E ++L+ SG F D FR +P+
Sbjct: 142 VILCGDLNVAHQEIDIKNPAANRRNAG--FTDEEREK--MTILLNSG--FIDTFRYFYPD 195
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
+++AYT W A + N G R+D+ + + D Q H+ V
Sbjct: 196 KKDAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEV 240
>gi|50843350|ref|YP_056577.1| exodeoxyribonuclease III [Propionibacterium acnes KPA171202]
gi|335054616|ref|ZP_08547422.1| exodeoxyribonuclease III [Propionibacterium sp. 434-HC2]
gi|387504259|ref|YP_005945488.1| exodeoxyribonuclease III [Propionibacterium acnes 6609]
gi|422456936|ref|ZP_16533599.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA1]
gi|50840952|gb|AAT83619.1| exodeoxyribonuclease III [Propionibacterium acnes KPA171202]
gi|315106020|gb|EFT77996.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA1]
gi|333764012|gb|EGL41422.1| exodeoxyribonuclease III [Propionibacterium sp. 434-HC2]
gi|335278304|gb|AEH30209.1| exodeoxyribonuclease III [Propionibacterium acnes 6609]
Length = 297
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 155 KMAFLTGFRDHLVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L K
Sbjct: 215 FDTIL--SPDTLIDVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELASK 269
>gi|312140778|ref|YP_004008114.1| exodeoxyribonuclease iii [Rhodococcus equi 103S]
gi|325675582|ref|ZP_08155266.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
gi|311890117|emb|CBH49435.1| exodeoxyribonuclease III [Rhodococcus equi 103S]
gi|325553553|gb|EGD23231.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
Length = 275
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
F SF++ + E + GR + V GD NIA D + + K+ F R W +
Sbjct: 137 FMASFAAHLSASAEAAVAAGRDVLVCGDWNIAHTERDIKNWKGNVKKSGFLPGERDWVGA 196
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+L +GG++ DV R HP+ Y+ W A + G RID+ L
Sbjct: 197 LL--AGGAWVDVVRELHPDVDGPYSWWSYRGKAFDTDAGWRIDYHLT 241
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+L++ L + + Y+ E L Q + + V GDLN+A ID + +AG F E
Sbjct: 115 RLDYRLQWEEAFYHYLEELKKQ-KPVIVCGDLNVAHQEIDLKNWKTNQKNAG--FTMEE- 170
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R F +L F D FR +PE+ Y+ W A + N G RID+ L + +
Sbjct: 171 RTAFSHLL---ANGFIDTFRYFYPEQTGIYSWWSYRFNARKNNAGWRIDYFLTSDELKPR 227
Query: 148 KHDLQSHNFVTCHVNECDILIDYK 171
D + H + + C + +D K
Sbjct: 228 LIDAKIHTSIMGS-DHCPVELDLK 250
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPS 122
GDLN+A ID +A + + F R+ E S F D FR KHP + +T W
Sbjct: 143 GDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGFVDSFRYKHPNETDHFTWWSY 202
Query: 123 NTGAEQFNYGTRIDHILCA 141
+ N G RID+ + +
Sbjct: 203 MNKVRERNIGWRIDYFIVS 221
>gi|329114100|ref|ZP_08242864.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
gi|326696639|gb|EGE48316.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
Length = 261
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSML 95
L F +++ R LL + + GD NI PA ID GP+ + + R +R +L
Sbjct: 120 LEFLNALTARARLLLAEETDFVLAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLL 179
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
D R+ HP AYT W A + + G RIDH+L +
Sbjct: 180 WL---GLTDALRAVHPT-GAAYTFWDYQARAWERDCGLRIDHMLLS 221
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L++ L F + L QG+ + + GDLN A ID + + F R W
Sbjct: 121 RLQYKLDFYDAFLDYANDLRDQGKNLVICGDLNTAHKEIDLARPKQNEDVSGFLPIEREW 180
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
L + D FR H +E YT W T A + N G R+D+
Sbjct: 181 VSKFL---DNGYVDTFRMLHENEKEKYTWWSYRTRARERNVGWRLDYFFV 227
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 49/158 (31%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F L++SG F D
Sbjct: 134 LNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF-----GELLKSG--FIDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
+R +P + AY+ W A N G RID+ L + D + D
Sbjct: 187 YRYFYPGKEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE------------D 227
Query: 166 ILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
L+D + T++EGSDH PV + +
Sbjct: 228 RLVD---------------ANIHTQIEGSDHCPVELII 250
>gi|395772804|ref|ZP_10453319.1| exodeoxyribonuclease [Streptomyces acidiscabies 84-104]
Length = 267
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 55 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 110
+GR + V GD NIA D + + + F R W + E G + DV R+ H
Sbjct: 143 AEGREVLVCGDWNIAHQQADLKNWRGNTKNSGFLPEEREWLGEVFGEGNGGYVDVMRTLH 202
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
P+ YT W A + G RID+ + A P L K
Sbjct: 203 PDVEGPYTWWSYRGRAFDNDTGWRIDYHV-ATPGLAGK 239
>gi|334331042|ref|XP_001371089.2| PREDICTED: endonuclease 8-like 3 [Monodelphis domestica]
Length = 630
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK-----WAFSK 506
T P C H CV RVV+K G + GR+F+ C +G + CG+FK WAF++
Sbjct: 505 TDSPRCNKHNRLCVLRVVRKDGESKGRQFYACPLPKG------SQCGFFKEAYRYWAFNQ 558
Query: 507 SKQK 510
+K
Sbjct: 559 YWKK 562
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F S+L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSSILEEG---FIDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P++ AY+ W GA N G R+D+ + +
Sbjct: 190 LYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 118
+ V GDLN+A ID +A + + + + R + E S F D FR +P+R Y+
Sbjct: 139 VIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTELLASGFIDTFRHFYPDREGVYS 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
W + N G RID+ L + + D + CH+
Sbjct: 199 WWSYMPKIRERNIGWRIDYFLASSRLAPKLQDAG----IDCHI 237
>gi|419594012|ref|ZP_14129203.1| exodeoxyribonuclease III [Campylobacter coli LMG 9854]
gi|380567977|gb|EIA90467.1| exodeoxyribonuclease III [Campylobacter coli LMG 9854]
Length = 252
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + E LL G I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYAKFLVYLEKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|330814067|ref|YP_004358306.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
gi|327487162|gb|AEA81567.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
Length = 247
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ + I + GD N+ P+ D + K E R FRS+L F D FR +
Sbjct: 129 KNKNIIITGDFNVIPSEEDVGNPEDWTNDALFKLEIRKKFRSLL---NLGFKDGFRLFNK 185
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 156
E +E YT W G+ Q N G RIDH L + + ++ F
Sbjct: 186 EPKE-YTFWDYQQGSWQRNKGLRIDHYLVSDSMIQDLKTIEIDKF 229
>gi|347736249|ref|ZP_08868938.1| exodeoxyribonuclease III [Azospirillum amazonense Y2]
gi|346920322|gb|EGY01471.1| exodeoxyribonuclease III [Azospirillum amazonense Y2]
Length = 261
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR++ + GD NIA ID + + + F R W + E G + DV+R
Sbjct: 141 LAQAGRQVILCGDWNIAHKEIDLKNWKGNLKNSGFLPEERAWLTRLFDEQG--WVDVYRR 198
Query: 109 KHPE-RREAYTCWPSNTGAEQFNYGTRIDHILC 140
+PE E YT W + A N G RID+ +
Sbjct: 199 LYPEVGEEGYTWWSNRGQAWAKNVGWRIDYQIA 231
>gi|299472085|emb|CBN79670.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Ectocarpus
siliculosus]
Length = 321
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 456 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
LC GH E C R KK GP GR F+ CAR P + C F WA K
Sbjct: 209 LCSGHGEECALRTTKKEGPNKGRHFYNCAR---PGNQ---RCSSFTWADKK 253
>gi|283955677|ref|ZP_06373170.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|283792902|gb|EFC31678.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
Length = 252
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLAYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANVNTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|402870902|ref|XP_003899436.1| PREDICTED: endonuclease 8-like 3 [Papio anubis]
Length = 602
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 502 PRCSKHSRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 544
>gi|57168378|ref|ZP_00367512.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|305432793|ref|ZP_07401952.1| exodeoxyribonuclease III [Campylobacter coli JV20]
gi|419537619|ref|ZP_14077023.1| exodeoxyribonuclease III [Campylobacter coli 111-3]
gi|419539254|ref|ZP_14078594.1| exodeoxyribonuclease III [Campylobacter coli 90-3]
gi|419541394|ref|ZP_14080602.1| exodeoxyribonuclease III [Campylobacter coli Z163]
gi|419542601|ref|ZP_14081721.1| exodeoxyribonuclease III [Campylobacter coli 2548]
gi|419544998|ref|ZP_14083933.1| exodeoxyribonuclease III [Campylobacter coli 2553]
gi|419547518|ref|ZP_14086232.1| exodeoxyribonuclease III [Campylobacter coli 2680]
gi|419549499|ref|ZP_14088088.1| exodeoxyribonuclease III [Campylobacter coli 2685]
gi|419550710|ref|ZP_14089200.1| exodeoxyribonuclease III [Campylobacter coli 2688]
gi|419555182|ref|ZP_14093283.1| exodeoxyribonuclease III [Campylobacter coli 2698]
gi|419557883|ref|ZP_14095777.1| exodeoxyribonuclease III [Campylobacter coli 80352]
gi|419561482|ref|ZP_14099084.1| exodeoxyribonuclease III [Campylobacter coli 86119]
gi|419561787|ref|ZP_14099317.1| exodeoxyribonuclease III [Campylobacter coli 1091]
gi|419565000|ref|ZP_14102360.1| exodeoxyribonuclease III [Campylobacter coli 1098]
gi|419567103|ref|ZP_14104338.1| exodeoxyribonuclease III [Campylobacter coli 1148]
gi|419569086|ref|ZP_14106205.1| exodeoxyribonuclease III [Campylobacter coli 1417]
gi|419570878|ref|ZP_14107904.1| exodeoxyribonuclease III [Campylobacter coli 7--1]
gi|419571123|ref|ZP_14108084.1| exodeoxyribonuclease III [Campylobacter coli 132-6]
gi|419574147|ref|ZP_14110914.1| exodeoxyribonuclease III [Campylobacter coli 1891]
gi|419575404|ref|ZP_14112095.1| exodeoxyribonuclease III [Campylobacter coli 1909]
gi|419578203|ref|ZP_14114730.1| exodeoxyribonuclease III [Campylobacter coli 59-2]
gi|419580139|ref|ZP_14116520.1| exodeoxyribonuclease III [Campylobacter coli 1948]
gi|419581318|ref|ZP_14117623.1| exodeoxyribonuclease III [Campylobacter coli 1957]
gi|419583258|ref|ZP_14119443.1| exodeoxyribonuclease III [Campylobacter coli 1961]
gi|419586004|ref|ZP_14122031.1| exodeoxyribonuclease III [Campylobacter coli 202/04]
gi|419587704|ref|ZP_14123611.1| exodeoxyribonuclease III [Campylobacter coli 67-8]
gi|419592104|ref|ZP_14127423.1| exodeoxyribonuclease III [Campylobacter coli 37/05]
gi|419595728|ref|ZP_14130824.1| exodeoxyribonuclease III [Campylobacter coli LMG 23336]
gi|419597634|ref|ZP_14132602.1| exodeoxyribonuclease III [Campylobacter coli LMG 23341]
gi|419599416|ref|ZP_14134275.1| exodeoxyribonuclease III [Campylobacter coli LMG 23342]
gi|419600412|ref|ZP_14135171.1| exodeoxyribonuclease III [Campylobacter coli LMG 23344]
gi|419603134|ref|ZP_14137696.1| exodeoxyribonuclease III [Campylobacter coli 151-9]
gi|419605160|ref|ZP_14139608.1| exodeoxyribonuclease III [Campylobacter coli LMG 9853]
gi|419609408|ref|ZP_14143556.1| exodeoxyribonuclease III [Campylobacter coli H6]
gi|419613482|ref|ZP_14147315.1| exodeoxyribonuclease III [Campylobacter coli H9]
gi|419615214|ref|ZP_14148965.1| exodeoxyribonuclease III [Campylobacter coli H56]
gi|419616775|ref|ZP_14150413.1| exodeoxyribonuclease III [Campylobacter coli Z156]
gi|57020186|gb|EAL56860.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|304444190|gb|EFM36844.1| exodeoxyribonuclease III [Campylobacter coli JV20]
gi|380514162|gb|EIA40483.1| exodeoxyribonuclease III [Campylobacter coli 111-3]
gi|380514591|gb|EIA40810.1| exodeoxyribonuclease III [Campylobacter coli Z163]
gi|380515539|gb|EIA41699.1| exodeoxyribonuclease III [Campylobacter coli 90-3]
gi|380520481|gb|EIA46308.1| exodeoxyribonuclease III [Campylobacter coli 2680]
gi|380522637|gb|EIA48309.1| exodeoxyribonuclease III [Campylobacter coli 2548]
gi|380524295|gb|EIA49912.1| exodeoxyribonuclease III [Campylobacter coli 2553]
gi|380525632|gb|EIA51141.1| exodeoxyribonuclease III [Campylobacter coli 2685]
gi|380529866|gb|EIA54984.1| exodeoxyribonuclease III [Campylobacter coli 2688]
gi|380530475|gb|EIA55552.1| exodeoxyribonuclease III [Campylobacter coli 2698]
gi|380535443|gb|EIA60151.1| exodeoxyribonuclease III [Campylobacter coli 86119]
gi|380540757|gb|EIA65053.1| exodeoxyribonuclease III [Campylobacter coli 1098]
gi|380540969|gb|EIA65258.1| exodeoxyribonuclease III [Campylobacter coli 80352]
gi|380542764|gb|EIA66991.1| exodeoxyribonuclease III [Campylobacter coli 1091]
gi|380544320|gb|EIA68363.1| exodeoxyribonuclease III [Campylobacter coli 1417]
gi|380544553|gb|EIA68575.1| exodeoxyribonuclease III [Campylobacter coli 1148]
gi|380545549|gb|EIA69522.1| exodeoxyribonuclease III [Campylobacter coli 7--1]
gi|380550100|gb|EIA73800.1| exodeoxyribonuclease III [Campylobacter coli 1891]
gi|380553657|gb|EIA77160.1| exodeoxyribonuclease III [Campylobacter coli 1909]
gi|380554267|gb|EIA77747.1| exodeoxyribonuclease III [Campylobacter coli 132-6]
gi|380555530|gb|EIA78840.1| exodeoxyribonuclease III [Campylobacter coli 1948]
gi|380555577|gb|EIA78886.1| exodeoxyribonuclease III [Campylobacter coli 59-2]
gi|380559678|gb|EIA82824.1| exodeoxyribonuclease III [Campylobacter coli 1957]
gi|380561037|gb|EIA84020.1| exodeoxyribonuclease III [Campylobacter coli 202/04]
gi|380563208|gb|EIA86049.1| exodeoxyribonuclease III [Campylobacter coli 67-8]
gi|380563590|gb|EIA86423.1| exodeoxyribonuclease III [Campylobacter coli 1961]
gi|380566769|gb|EIA89343.1| exodeoxyribonuclease III [Campylobacter coli 37/05]
gi|380573018|gb|EIA95182.1| exodeoxyribonuclease III [Campylobacter coli LMG 23336]
gi|380573033|gb|EIA95195.1| exodeoxyribonuclease III [Campylobacter coli LMG 23341]
gi|380574857|gb|EIA96949.1| exodeoxyribonuclease III [Campylobacter coli LMG 23342]
gi|380578644|gb|EIB00478.1| exodeoxyribonuclease III [Campylobacter coli LMG 9853]
gi|380579637|gb|EIB01424.1| exodeoxyribonuclease III [Campylobacter coli 151-9]
gi|380583058|gb|EIB04641.1| exodeoxyribonuclease III [Campylobacter coli LMG 23344]
gi|380584037|gb|EIB05530.1| exodeoxyribonuclease III [Campylobacter coli H6]
gi|380587643|gb|EIB08826.1| exodeoxyribonuclease III [Campylobacter coli H9]
gi|380591796|gb|EIB12758.1| exodeoxyribonuclease III [Campylobacter coli H56]
gi|380595035|gb|EIB15797.1| exodeoxyribonuclease III [Campylobacter coli Z156]
Length = 252
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + E LL G I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYAKFLVYLEKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|419552755|ref|ZP_14091047.1| exodeoxyribonuclease III [Campylobacter coli 2692]
gi|380530631|gb|EIA55697.1| exodeoxyribonuclease III [Campylobacter coli 2692]
Length = 252
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|358635972|dbj|BAL23269.1| exodeoxyribonuclease III [Azoarcus sp. KH32C]
Length = 253
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS---FFDVFRS-KHPERR 114
R+ + GD NIAP DR DA PD+ K+E + + +G + D FR + PER
Sbjct: 139 RLVLGGDFNIAPE--DR-DAHPDW-KDEIHVSPQERAAFAGLTALGLIDAFRLFEQPER- 193
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
+++ W GA + N+G RIDH+L + L Q
Sbjct: 194 -SFSWWDYRMGAFRRNFGLRIDHLLLSSGLLDQ 225
>gi|355687737|gb|EHH26321.1| hypothetical protein EGK_16257 [Macaca mulatta]
Length = 602
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 502 PRCSKHSRLCILRVVRKDGENKGRQFYACPLPR------EAQCGFFEWA 544
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GDLN+A ID R +AG +E R F ++L ESG F D F
Sbjct: 134 LEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAG---FTDEERAKFTTLL-ESG--FTDTF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +PE+ Y+ W A + N G RID+ L +
Sbjct: 188 RYFYPEQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|375093546|ref|ZP_09739811.1| exodeoxyribonuclease III [Saccharomonospora marina XMU15]
gi|374654279|gb|EHR49112.1| exodeoxyribonuclease III [Saccharomonospora marina XMU15]
Length = 288
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 56 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
QG + VVGD NIA A ID R ++G F +E R W + E+G + DV R
Sbjct: 162 QGCEVLVVGDWNIAHAEIDLKNWKGNRKNSG--FLPHE-REWLGRVFDEAG--YVDVQRR 216
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
PE YT W A + G RID ++CA P + +K
Sbjct: 217 LDPEGPGPYTWWSYRGKAFDNDSGWRID-LICATPGIAEK 255
>gi|205356520|ref|ZP_03223283.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
gi|205345525|gb|EDZ32165.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
Length = 259
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 122 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 182 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 229
>gi|57237312|ref|YP_178325.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|148926400|ref|ZP_01810084.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
gi|57166116|gb|AAW34895.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|145844792|gb|EDK21897.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
Length = 259
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 122 RLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 182 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 229
>gi|373458129|ref|ZP_09549896.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
gi|371719793|gb|EHO41564.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
Length = 255
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ + L F + + L G ++ + GD N A ID + + + F R W
Sbjct: 118 RVAYKLEFYAELLKMANALRDAGNKVIITGDFNTAHREIDLKNPKSNQKTSGFLPEERAW 177
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
L E + D FR +P+ ++ YT W A Q N G RID+ + + L
Sbjct: 178 IDRYLQEG---WIDTFRHFYPQLKDQYTWWSYRFNARQRNIGWRIDYFMNSENLL 229
>gi|82703533|ref|YP_413099.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82411598|gb|ABB75707.1| Exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 277
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFR 92
++ L + +++ +L + R++ V+GD NIAP D D+ K F R FR
Sbjct: 117 QYKLRWLAALREWLREMLSRHRKLVVLGDFNIAPEDCDVHDSKLWEGKVLFSELERAAFR 176
Query: 93 SMLVESGGSFFDVFRS-KHPERREAYTCWPSNTGAEQFNYGTRIDHIL----CAGPC 144
+L F D FR PE+ ++T W A + N G RIDHIL AG C
Sbjct: 177 EVL---DLGFIDSFRLFDQPEK--SFTWWDYRMMAFRRNMGLRIDHILLSRELAGMC 228
>gi|288817830|ref|YP_003432177.1| exodeoxyribonuclease III [Hydrogenobacter thermophilus TK-6]
gi|384128591|ref|YP_005511204.1| exodeoxyribonuclease III Xth [Hydrogenobacter thermophilus TK-6]
gi|288787229|dbj|BAI68976.1| exodeoxyribonuclease III [Hydrogenobacter thermophilus TK-6]
gi|308751428|gb|ADO44911.1| exodeoxyribonuclease III Xth [Hydrogenobacter thermophilus TK-6]
Length = 268
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 112
+I +VGD+N+A ID D P K+ E R + ++ F D FR +PE
Sbjct: 150 KIVLVGDMNVAMEDIDVYD--PVLLKDTIGTMKEERDALKKLI---SWGFVDAFRYLYPE 204
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 151
+R+ +T W G + G RID+IL P L D+
Sbjct: 205 KRQ-FTWWDYIGGMVWKDQGMRIDYILITKPLLAYLRDV 242
>gi|121613613|ref|YP_999970.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504268|gb|EAQ73304.2| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
Length = 259
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 122 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 182 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 229
>gi|419555879|ref|ZP_14093881.1| exodeoxyribonuclease III [Campylobacter coli 84-2]
gi|419607406|ref|ZP_14141728.1| exodeoxyribonuclease III [Campylobacter coli LMG 9860]
gi|380535456|gb|EIA60163.1| exodeoxyribonuclease III [Campylobacter coli 84-2]
gi|380584746|gb|EIB06146.1| exodeoxyribonuclease III [Campylobacter coli LMG 9860]
Length = 252
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + E LL G I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYAKFLVYLEKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 58 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
+ + + GDLN+A ID R +AG D +N+ S L+++G F D FR
Sbjct: 137 KSVIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKM-----SALLDAG--FIDTFRYF 189
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P AY+ W A + N G RID+ LC+
Sbjct: 190 YPTLTGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ + GDLN+A ID R +AG F E + L+E+G F D FR +P+
Sbjct: 139 LIICGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MTTLLENG--FIDTFRYFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A Q N G RID+ LC+
Sbjct: 193 LEGAYSWWSYMGRARQNNTGWRIDYFLCS 221
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + + + V GDLN+A ID + + F I R S L+E+G F D FR +
Sbjct: 133 LEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELLEAG--FIDTFRYFY 190
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
P+ + Y+ W A + N G RID+ L +
Sbjct: 191 PDAMDMYSWWSYRFKAREKNTGWRIDYFLAS 221
>gi|308274119|emb|CBX30718.1| Exodeoxyribonuclease [uncultured Desulfobacterium sp.]
Length = 263
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L++ L+F + + + L QG+ + + GD N A ID P+ + F R W
Sbjct: 125 RLQYKLNFYNDFFAYTDSLKNQGKNLIISGDYNTAHNEIDLTHPKPNEKYSGFLRVERDW 184
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
++ + D FR +PE+ + Y+ W A + N G R+D+I +
Sbjct: 185 MDEIIKR---GYVDTFRYFYPEKVK-YSWWSYRANARKKNVGWRVDYIFVS 231
>gi|74316272|ref|YP_314012.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
gi|74055767|gb|AAZ96207.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
Length = 259
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 33 RIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----R 88
R Q +F F + + E L+ GR I + GD NIA ID + + + F R
Sbjct: 118 RQQAKFR--FLDAFFPHLEKLVKCGREIIICGDWNIAHQEIDLKNWKSNQKNSGFLPEER 175
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
W + E G + DV+RS +P EAYT W + A N G RID+ + A P +
Sbjct: 176 AWMTRLFDELG--WVDVYRSLYPAHTGEAYTWWSNRGQAWAKNVGWRIDYQI-ATPGIAA 232
Query: 148 K 148
K
Sbjct: 233 K 233
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ GD N+A AID ++ K+ + I S E+G F D FR HPE
Sbjct: 142 VIACGDFNVAHQAIDIARPKANYNKSAGYTQTEIDGFSRFTEAG--FIDSFRHFHPET-V 198
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
AY+ W GA N G RID++L + L + D
Sbjct: 199 AYSWWSYRAGARAKNIGWRIDYVLTSQALLPRIQD 233
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FTDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P+ AY+ W A + N G RID+ + +
Sbjct: 186 FRYFYPDLEHAYSWWSYRANARKNNTGWRIDYFIVS 221
>gi|419621753|ref|ZP_14155001.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23216]
gi|380601159|gb|EIB21477.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23216]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|332529941|ref|ZP_08405892.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
gi|332040638|gb|EGI77013.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
Length = 265
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 55 CQGRRIFVV-GDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 109
+G+R F++ GD+NIA +D + + + F R W +L G DV+R+
Sbjct: 141 LRGQREFILCGDVNIAHKEMDLKNWKGNLKNSGFLPEERAWMTKLLDPQQGGLVDVYRTL 200
Query: 110 HPERRE-AYTCWPSNTGAEQFNYGTRIDH 137
PE + AYT W + A N G RID+
Sbjct: 201 EPEAIDTAYTWWSNRGQAYAKNVGWRIDY 229
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 49/160 (30%)
Query: 50 WEFLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGS 101
W L + + + V GD+N+A ID R AG D + +F + L+++G
Sbjct: 129 WLKKLEENKPVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKF-----TELLDAG-- 181
Query: 102 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161
F D FR +P++ Y+ W A + N G RID+ C CL
Sbjct: 182 FIDTFRYFYPDQEGIYSWWSYRFRAREKNAGWRIDY-FCVSECLK--------------- 225
Query: 162 NECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
D L+D G+ T + GSDH PV +
Sbjct: 226 ---DRLVD---------------AGILTDIMGSDHCPVVL 247
>gi|384442595|ref|YP_005658847.1| Exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|419620840|ref|ZP_14154248.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419624796|ref|ZP_14157873.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|419633809|ref|ZP_14166233.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|419645293|ref|ZP_14176848.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|419649253|ref|ZP_14180535.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|419656249|ref|ZP_14187063.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419658622|ref|ZP_14189236.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-1]
gi|419664105|ref|ZP_14194278.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419671933|ref|ZP_14201561.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419673955|ref|ZP_14203397.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419678328|ref|ZP_14207387.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419683835|ref|ZP_14212505.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|419685622|ref|ZP_14214155.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419690758|ref|ZP_14218950.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419695704|ref|ZP_14223592.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23210]
gi|424847271|ref|ZP_18271851.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|315057682|gb|ADT72011.1| Exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|356485378|gb|EHI15372.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|380597742|gb|EIB18227.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|380598351|gb|EIB18765.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380610987|gb|EIB30552.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|380620606|gb|EIB39478.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|380624933|gb|EIB43554.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|380633153|gb|EIB51156.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380635608|gb|EIB53398.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380641572|gb|EIB58908.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380648748|gb|EIB65573.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380652521|gb|EIB68999.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657295|gb|EIB73376.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380660994|gb|EIB76919.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380662820|gb|EIB78505.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380668252|gb|EIB83621.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380677603|gb|EIB92467.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23210]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|86153870|ref|ZP_01072073.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|419670267|ref|ZP_14199996.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-11]
gi|85842831|gb|EAQ60043.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|380644944|gb|EIB62042.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|86149633|ref|ZP_01067863.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597280|ref|ZP_01100515.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218561918|ref|YP_002343697.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168
= ATCC 700819]
gi|317511923|ref|ZP_07969188.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384447548|ref|YP_005655599.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403055041|ref|YP_006632446.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407941706|ref|YP_006857346.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415732396|ref|ZP_11473859.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|419626455|ref|ZP_14159440.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|419628923|ref|ZP_14161668.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419632465|ref|ZP_14165003.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|419637977|ref|ZP_14170111.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|419638983|ref|ZP_14171026.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419646732|ref|ZP_14178191.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419650601|ref|ZP_14181817.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419651439|ref|ZP_14182536.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419660313|ref|ZP_14190789.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419662243|ref|ZP_14192547.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419667742|ref|ZP_14197699.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-10]
gi|419676175|ref|ZP_14205415.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
110-21]
gi|419678025|ref|ZP_14207133.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419693096|ref|ZP_14221133.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|424849397|ref|ZP_18273853.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|85839901|gb|EAQ57160.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190341|gb|EAQ94315.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112359624|emb|CAL34409.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168
= ATCC 700819]
gi|284925531|gb|ADC27883.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927175|gb|EFV06525.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315928582|gb|EFV07877.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487448|gb|EHI17397.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380603300|gb|EIB23419.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|380608666|gb|EIB28434.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380608875|gb|EIB28618.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|380614477|gb|EIB33854.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|380617635|gb|EIB36800.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380623097|gb|EIB41820.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380628275|gb|EIB46596.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380631186|gb|EIB49393.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380637065|gb|EIB54723.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380638622|gb|EIB56167.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380645423|gb|EIB62470.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380650540|gb|EIB67164.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
110-21]
gi|380652432|gb|EIB68914.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380667726|gb|EIB83138.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|401780693|emb|CCK66386.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407905544|gb|AFU42373.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNE 86
+L++ +++ S +R L + ++ VV GDLN+A ID R +AG +E
Sbjct: 115 RLDYRMAWEDS--FRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDE 169
Query: 87 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R F +L F D FR+ +P++ AYT W A + N G RID+ L +
Sbjct: 170 ERGKFGELL---AAGFVDTFRALYPDKTGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|283955329|ref|ZP_06372828.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283793089|gb|EFC31859.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D + + S L+ESG F D
Sbjct: 133 LKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P AY+ W A + N G RID+ LC+
Sbjct: 186 FRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|86151219|ref|ZP_01069434.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123837|ref|YP_004065841.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841566|gb|EAQ58813.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017559|gb|ADT65652.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F+ E + R L+E+G F D F
Sbjct: 134 LDKKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQERGAFTR--LLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G R+D+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIED 231
>gi|381205840|ref|ZP_09912911.1| exodeoxyribonuclease III [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 338
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 112
++ V+GDLNIAP ID D P K E R F+++L DVFR K +
Sbjct: 220 KMIVLGDLNIAPEDIDVPD--PTAMKEMVSFRPEERAAFQNLL---ALGLHDVFR-KFSK 273
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
YT W T + N G RIDHIL + + Q
Sbjct: 274 ESGQYTWWDYRTRGFERNDGMRIDHILSSEYLIEQ 308
>gi|337286420|ref|YP_004625893.1| exodeoxyribonuclease III [Thermodesulfatator indicus DSM 15286]
gi|335359248|gb|AEH44929.1| exodeoxyribonuclease III [Thermodesulfatator indicus DSM 15286]
Length = 260
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-----MLVESGGSFFDVFRSKHPERREAYT 118
GD N+AP ID D P+ R +L E G D +R+ HP+ + A+T
Sbjct: 148 GDFNVAPEKIDVYD--PELLAGHICFHERERTAIKLLKEWG--LVDTYRALHPDEKGAFT 203
Query: 119 CWPSNTGAEQFNYGTRIDHILCA 141
W GA + N G R+DHI +
Sbjct: 204 WWDYQFGAFKANRGMRLDHIWVS 226
>gi|157414552|ref|YP_001481808.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|415746036|ref|ZP_11475281.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419636145|ref|ZP_14168418.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|157385516|gb|ABV51831.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|315932053|gb|EFV11006.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380610501|gb|EIB30090.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
Length = 252
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|408419182|ref|YP_006760596.1| exodeoxyribonuclease ExoA [Desulfobacula toluolica Tol2]
gi|405106395|emb|CCK79892.1| ExoA: exodeoxyribonuclease [Desulfobacula toluolica Tol2]
Length = 263
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 35 QLEFNLSFSSSMYYRWEF-----LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI 89
+LE+ L+F Y W L QG+ + + GD N A ID + GP+ ++ F
Sbjct: 125 RLEYKLAF-----YDWFLDYANQLKDQGKSLIITGDFNTAHNEIDLKNPGPNSKRSGFLR 179
Query: 90 WFRSML---VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R +L V+ G + D +R +PE+ + Y+ W A + N G RID+ +
Sbjct: 180 IERDVLDHMVDMG--YVDTYRYFYPEKVK-YSWWSYRFNARKNNAGWRIDYFFVTKDLID 236
Query: 147 Q 147
+
Sbjct: 237 K 237
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG F E R L+E+G F D FR +P+
Sbjct: 139 VVVCGDLNVAHREIDLKNAKFNRGNAG--FTDEEREAMTR--LLEAG--FTDTFRHFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
R +AYT W + N G RID+ L +
Sbjct: 193 RTDAYTWWSFMPKVRERNIGWRIDYFLVSA 222
>gi|256269259|gb|EEU04581.1| Apn2p [Saccharomyces cerevisiae JAY291]
gi|259144827|emb|CAY77766.1| Apn2p [Saccharomyces cerevisiae EC1118]
gi|365767051|gb|EHN08539.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 520
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|151946376|gb|EDN64598.1| AP endonuclease [Saccharomyces cerevisiae YJM789]
gi|349576362|dbj|GAA21533.1| K7_Apn2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 520
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|167004926|ref|ZP_02270684.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
gi|419618499|ref|ZP_14152038.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
129-258]
gi|419654476|ref|ZP_14185409.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419666357|ref|ZP_14196381.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419681947|ref|ZP_14210750.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
140-16]
gi|419687481|ref|ZP_14215872.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380594688|gb|EIB15473.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
129-258]
gi|380630881|gb|EIB49097.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380641194|gb|EIB58575.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380656910|gb|EIB73037.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
140-16]
gi|380662330|gb|EIB78078.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
Length = 252
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|189345695|ref|YP_001942224.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
gi|189339842|gb|ACD89245.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
Length = 258
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
LL GR++ + GD+NIA ID + G + E R ++ + D+ RS
Sbjct: 135 LLDSGRQVILAGDMNIAHRDIDVHRSQNKPGAVGLRPEERA---AIDAQIASGLQDIMRS 191
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRID 136
HP+ + +T WP A + N G RID
Sbjct: 192 MHPDAADLFTWWPYWKPARERNLGWRID 219
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E R F ++L F D F
Sbjct: 134 LDRKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P++ AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D + + S L+ESG F D
Sbjct: 133 LKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P AY+ W A + N G RID+ LC+
Sbjct: 186 FRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|323356266|gb|EGA88070.1| Apn2p [Saccharomyces cerevisiae VL3]
Length = 520
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F +L F D FR
Sbjct: 134 LDKQKPVVFCGDLNVAHQEIDLKNPKTNRKNPGFSDQE-RAMFGQLL---DNGFVDTFRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+PE+ +AY+ W A N G RID+ + +
Sbjct: 190 LYPEQEDAYSWWSYRMNARSRNVGWRIDYFVVS 222
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTCWPS 122
GDLN+A ID +A + + F R+ E S F D FR KHP + +T W
Sbjct: 143 GDLNVAHTEIDLKNAKSNVGNSGFTYEERAKFSELLASGFVDSFRYKHPNETDHFTWWSY 202
Query: 123 NTGAEQFNYGTRIDHILCA 141
+ N G RID+ + +
Sbjct: 203 MNKVRERNIGWRIDYFIVS 221
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+L++ +++ + + R+ L + + V GDLN+A ID R +AG F E
Sbjct: 115 RLDYRMTWEDA-FRRYLLELDAKKPVLVCGDLNVAHKEIDLKNPKTNRMNAG--FTDQE- 170
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
R F+++L F D FR +PE+ Y+ W A + N G RID+ L +
Sbjct: 171 REKFQTLL---DAGFIDTFRYFYPEQEGIYSWWSYRFRAREKNAGWRIDYFLASA 222
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
L + + + GDLN+A ID + +AG +E R F +L G F D FR
Sbjct: 132 LDKTKPVVYCGDLNVAHEEIDLKNPKSNAGNAGFSDEERGKFTELL---GAGFADTFRRL 188
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+P++ AY+ W A + N G RID+ + + + + D
Sbjct: 189 YPDKAGAYSWWSYRFNARKNNAGWRIDYFVVSERLMDKVKD 229
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + GDLN+A ID R +AG F+ E R F +L + F D F
Sbjct: 133 LEQAKPVIFCGDLNMAHTEIDLKNPKTNRKNAG--FSDEE-RAKFGELLKKG---FIDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P++ EAYT W A N G RID+ + Q D
Sbjct: 187 RYFYPDKTEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQLRD 230
>gi|242054695|ref|XP_002456493.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
gi|241928468|gb|EES01613.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
Length = 511
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSK 109
L + + + + GDLN A ID D + NE R F + + G F D FR +
Sbjct: 393 LEKSKPVILTGDLNCAHQEIDIHDPAGNRKSAGFTNEERESFETNFLSKG--FVDTFRKQ 450
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
HP AY+ W A + N G R+D+ L + + HD
Sbjct: 451 HPSVV-AYSYWGYRHNARKTNKGWRLDYFLVSESIAEKVHD 490
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E R F ++L F D F
Sbjct: 134 LDRKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P++ AY+ W T A + N G R+D+++ +
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|401826782|ref|XP_003887484.1| exonuclease III [Encephalitozoon hellem ATCC 50504]
gi|395460002|gb|AFM98503.1| exonuclease III [Encephalitozoon hellem ATCC 50504]
Length = 323
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 37/114 (32%)
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R W +S++ GG D +R H ++ E+YTCW + N GTRID+IL
Sbjct: 220 RKWLKSLI--DGGKHVDAYRILH-KKPESYTCWNTMLNMRPHNLGTRIDYILIPSGF--- 273
Query: 148 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
SH F C++ + GSDH PVY+
Sbjct: 274 -----SHRFKDCNI--------------------------QPEIYGSDHCPVYV 296
>gi|440701564|ref|ZP_20883744.1| exodeoxyribonuclease III [Streptomyces turgidiscabies Car8]
gi|440275741|gb|ELP64109.1| exodeoxyribonuclease III [Streptomyces turgidiscabies Car8]
Length = 267
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 51 EFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
E GR + V GD NIA D R + E R W +L E G F DV
Sbjct: 139 ERAAADGREVVVCGDWNIAHQQADLKNWRANQKSSGFLPEEREWLGRVLDEGDGGFVDVV 198
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
R+ HP+ Y+ W A + G RID+ + P L K
Sbjct: 199 RALHPDVEGPYSWWSYRGRAFDNDSGWRIDYEIST-PGLAAK 239
>gi|51013817|gb|AAT93202.1| YBL019W [Saccharomyces cerevisiae]
Length = 520
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|6319452|ref|NP_009534.1| DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|586406|sp|P38207.1|APN2_YEAST RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|536013|emb|CAA84838.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810316|tpg|DAA07101.1| TPA: DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|392301201|gb|EIW12290.1| Apn2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 520
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ V GDLN+A ID + + F I R + L+ SG F D FR +P +
Sbjct: 139 VIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSG--FIDTFRYFYPTKENC 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCA 141
Y+ W GA N G RID+ + +
Sbjct: 197 YSWWSYRAGARAKNVGWRIDYFITS 221
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ GDLN+A ID +A + + F R+ + E F D FR+ +P + YT
Sbjct: 62 VIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLDAGFVDTFRALYPNVTDKYT 121
Query: 119 CWPSNTGAEQFNYGTRIDHILCA 141
W + G + N G RID+ L +
Sbjct: 122 WWSNMPGVRERNIGWRIDYFLVS 144
>gi|163787138|ref|ZP_02181585.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
gi|159877026|gb|EDP71083.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
Length = 253
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 60 IFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ VVGD NI AID + F E R W + ++SG F D FR HP+R+E
Sbjct: 143 LVVVGDYNICHEAIDIHNPKMKGVSGFLPEE-REWLGN-FIDSG--FIDSFRYLHPKRQE 198
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT--CHVNECDILID 169
Y+ W + N G R+D+ + + P + +++ +T H + C IL++
Sbjct: 199 -YSWWSYRANSRANNKGWRLDYAMASKPL---QENIKRSVILTEAVHSDHCPILLE 250
>gi|217969881|ref|YP_002355115.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
gi|217507208|gb|ACK54219.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
Length = 254
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------R 88
+ E+ L + +++ L R+ + GD NIAP DR DA PD+ K+E R
Sbjct: 117 KFEYKLRWLAALTEWLRAELKTHERLVLAGDFNIAPE--DR-DAHPDW-KDEIHVSAPER 172
Query: 89 IWFRSMLVESGGSFFDVFRS-KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
FR+ L E G D FR + PER A++ W A + N+G RIDH+L + P L
Sbjct: 173 AAFRA-LQELG--LIDAFRLFEQPER--AFSWWDYRMMAFRRNFGLRIDHLLVS-PAL 224
>gi|326918598|ref|XP_003205575.1| PREDICTED: endonuclease 8-like 3-like, partial [Meleagris
gallopavo]
Length = 546
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506
Q + + P C H + CV ++V K GP GR FFVC + E CG+F+WA +K
Sbjct: 488 QWADLNFPFCH-HGKRCVMKMVLKLGPNNGRNFFVCPLRK------EKQCGFFQWAENK 539
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ T P C H C R+V+K G GR F+ C E C YF+WA
Sbjct: 443 LSTGPPHCSKHGHLCKLRIVRKDGENKGRMFYSCPLPS------ETQCNYFQWA 490
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 27 GLELI-VRIQLEFNLSFSSSMYYRWEFL--LCQGRRIFVVGDLNIAPAAID-------RC 76
GLE I R+Q E + E+L L + + + + GDLN+A ID R
Sbjct: 113 GLERIDYRLQWEADFK---------EYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRK 163
Query: 77 DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 136
+AG F+ E + S L+ +G F D FR +P+R Y+ W T A + N G R+D
Sbjct: 164 NAG--FSDQEREAF--SALLNTG--FTDSFRYLYPDREGGYSWWSYRTNAREKNIGWRLD 217
Query: 137 HILCA 141
+++ +
Sbjct: 218 YVIVS 222
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 38/155 (24%)
Query: 34 IQLEFNLSFSSSMY------------YR--WE--FL-----LCQGRRIFVVGDLNIAPAA 72
I LEF+ + ++Y YR WE FL L + + + GDLN+A
Sbjct: 94 ITLEFDTYYLVTVYTPNSQNELARLPYRMTWEEAFLAYLKGLEKNKPVIFCGDLNVAHKE 153
Query: 73 ID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 124
ID R +AG D + +F S ++E+G F D +R +PE+ Y+ W
Sbjct: 154 IDLKNPKTNRKNAGFTDEEREKF-----SQILENG--FIDTYRYFYPEQEGVYSWWSYRF 206
Query: 125 GAEQFNYGTRIDHILCAGPCLHQKH-DLQSHNFVT 158
A + N G RID+ C CL + D + H +T
Sbjct: 207 RAREKNAGWRIDY-FCVSECLKDRLVDARIHTEIT 240
>gi|421849785|ref|ZP_16282759.1| exodeoxyribonuclease III [Acetobacter pasteurianus NBRC 101655]
gi|371459402|dbj|GAB27962.1| exodeoxyribonuclease III [Acetobacter pasteurianus NBRC 101655]
Length = 247
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 40 LSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPD--FAKNEFRIWFRSML 95
L F +++ R LL + + GD NI PA ID GP+ + + R +R +L
Sbjct: 106 LEFLNALTARARLLLAEETDFALAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLL 165
Query: 96 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
D R+ HP AYT W A + + G RIDH+L
Sbjct: 166 WL---GLTDALRALHPT-GAAYTFWDYQARAWERDCGLRIDHML 205
>gi|70671407|emb|CAI59769.1| putative DNA lyase [Xanthoria polycarpa]
Length = 81
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
+ + P C+ H EPC + KK G GR F++CAR GP+ E N C F W
Sbjct: 6 FTKPAAPRCECHGEPCKTMLTKKSGMNCGRSFWMCARPLGPSGQKEKNTQWRCATFIW 63
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 112
L + + + + GD+N+A ID + + F RS + + F D FR+ +P+
Sbjct: 216 LDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPD 275
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A N G R+D+ L +
Sbjct: 276 KEGAYTFWSYFANARSKNIGWRLDYFLVS 304
>gi|284035454|ref|YP_003385384.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
gi|283814747|gb|ADB36585.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
Length = 254
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 112
++ VVGD NIA AID D P KN E R W S G D FR KHP
Sbjct: 142 KVIVVGDYNIAHNAIDIHD--PVRNKNTTGFLPEERAWMDSWF---GSGMTDGFRYKHPT 196
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDH 137
AY+ W GA N G RID+
Sbjct: 197 -DVAYSWWSYRAGARTNNKGWRIDY 220
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D + +F + L+E+G F D
Sbjct: 134 LEEDKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKF-----TKLLEAG--FIDT 186
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
FR +P+ EAY+ W A + N G RID+ C L ++
Sbjct: 187 FRHFYPDVTEAYSWWSYRFRAREKNAGWRIDY-FCVSEGLEER 228
>gi|220923190|ref|YP_002498492.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
gi|219947797|gb|ACL58189.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
Length = 263
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFR 92
++ L+F + L + + + GD N+ P ID + G E R FR
Sbjct: 124 DYKLAFLRRLLLHARALREKEEVLVLAGDYNVIPEPIDVANPEAWTGDALFLPESRAAFR 183
Query: 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
+L E F D R+ ER YT W GA N G RIDH+L + L +
Sbjct: 184 MLLNEG---FTDALRACD-ERPGLYTFWDYQAGAWSRNLGIRIDHLLLSPQALDR 234
>gi|432089680|gb|ELK23500.1| Endonuclease 8-like 3, partial [Myotis davidii]
Length = 543
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 454 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+P C H CV RVV K G GR F+ C EA CG+FKWA
Sbjct: 449 VPRCSQHHRLCVLRVVSKGGENKGRPFYTCPLPR------EAQCGFFKWA 492
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCW 120
GDLN+A AID + + F R S L+++G F D FR HP+R AY+ W
Sbjct: 144 GDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSELLDTG--FIDSFRYLHPDREGAYSWW 201
Query: 121 PSNTGAEQFNYGTRIDHILCA 141
A N G RID+ + +
Sbjct: 202 SYMGNARARNVGWRIDYFVIS 222
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 118
+ + GDLN+A ID + + F R + E S F D FR+ +P+R AYT
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTELLSSGFTDTFRALYPDRTGAYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
W A + N G RID+ + + L + D
Sbjct: 199 WWSYRFNARKNNAGWRIDYFIVSDRLLPRVRD 230
>gi|403285173|ref|XP_003933910.1| PREDICTED: endonuclease 8-like 3 [Saimiri boliviensis boliviensis]
Length = 605
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNHLCILRVVRKDGENKGRHFYACPLPR------EAQCGFFEWA 547
>gi|419698718|ref|ZP_14226400.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23211]
gi|380673488|gb|EIB88482.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23211]
Length = 252
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLAYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|410955967|ref|XP_003984618.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease 8-like 3 [Felis catus]
Length = 706
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C HK CV RVV+K G GR+F+ C +A CG+F+WA
Sbjct: 606 PRCGKHKLLCVLRVVQKDGENKGRQFYACPLPR------QAQCGFFQWA 648
>gi|419694359|ref|ZP_14222326.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9872]
gi|380670894|gb|EIB86134.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
9872]
Length = 252
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKVNTNTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|329119607|ref|ZP_08248288.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
gi|327464204|gb|EGF10508.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
Length = 276
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 109
L + ++ ++GD NIAPA D D G ++ R WF+++L G D R
Sbjct: 148 LARHDKLVLLGDFNIAPADADCYDPEKWRGKILCTDQERGWFQTLL---GLGLTDSLRRI 204
Query: 110 HPERREAYTCWPSNTGAE-QFNYGTRIDHIL 139
HPE A+ W GA Q G RIDH+L
Sbjct: 205 HPE--GAFYTWFDYRGAMFQRGLGLRIDHLL 233
>gi|34499702|ref|NP_903917.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
gi|34105553|gb|AAQ61907.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
Length = 258
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 51 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVF 106
E L +GR I + GD NIA ID + + + F R W +L G + DV+
Sbjct: 135 EKLRAEGRDIVICGDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMTDLLGRVG--WRDVW 192
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 166
R+ +PE YT W + A + G RID+ + P L + + S + +
Sbjct: 193 RNLYPE-APGYTWWSNRGQAYAKDVGWRIDYQIVT-PSLMELAESASVYKDEKFSDHAPL 250
Query: 167 LIDYKR 172
++DY+R
Sbjct: 251 IVDYRR 256
>gi|449500546|ref|XP_002188348.2| PREDICTED: endonuclease 8-like 3 [Taeniopygia guttata]
Length = 570
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 28/131 (21%)
Query: 373 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 432
+ + VT LS + P S H K TD+ SVH + S+ S+ D+
Sbjct: 412 DCSTPVTALPLSSCQQPVSFKHIQKKQKTDHVPSVHPYNTAISAPQSNVTDDTG------ 465
Query: 433 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 492
++ P C H+ C RVV+K G GR+F+ C+ +
Sbjct: 466 ----------------MLSMGHPRCTKHRRLCSLRVVRKDGENKGRQFYCCSLSR----- 504
Query: 493 PEANCGYFKWA 503
E C YF+WA
Sbjct: 505 -ETRCEYFQWA 514
>gi|426405542|ref|YP_007024513.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862210|gb|AFY03246.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
Length = 255
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F L F ++ R + L +GR + + GD NIA ID + + F R W
Sbjct: 118 RLPFKLEFCAAAEKRLQALRKKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAW 177
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
L + D FR K + + YT W G + N G R+D+ L
Sbjct: 178 MTKFL--DKLEWVDSFR-KFEQGPDHYTWWSYRPGVREKNIGWRLDYFLV 224
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ + GDLN+A ID + + F R S+L+E G F D FR+ +PE+ A
Sbjct: 205 VVLTGDLNVAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQG--FVDTFRTLNPEKTGA 262
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCA 141
YT W + N G R+D+ + +
Sbjct: 263 YTFWTYFHNSRAKNVGWRLDYFITS 287
>gi|350568028|ref|ZP_08936434.1| exodeoxyribonuclease III [Propionibacterium avidum ATCC 25577]
gi|348662280|gb|EGY78949.1| exodeoxyribonuclease III [Propionibacterium avidum ATCC 25577]
Length = 297
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR + ++GD NIA D + + F R W
Sbjct: 155 KMTFLAGFREYLATRRQECAAQGRHVLLMGDFNIAHENADLKNWKSNQRNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F ++L S + DV R++HP+ Y+ W A + G RID+ L A P L +K
Sbjct: 215 FDTIL--SPETLVDVVRAQHPDVNGPYSWWSWRGKAFVNDAGWRIDYHL-ASPELARK 269
>gi|348566751|ref|XP_003469165.1| PREDICTED: endonuclease 8-like 3-like [Cavia porcellus]
Length = 607
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C+ H CV RVV+K G GR+F+ C +A CG+F+WA
Sbjct: 507 PRCRKHNRLCVLRVVRKHGENRGRQFYACPLPG------DAQCGFFEWA 549
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 439 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 498
EW + S P C H + + R V K GP GR FFVC + E C
Sbjct: 544 GFFEW------ADLSFPFC-SHGKRSIMRTVLKIGPNNGRNFFVCPLEK------EKQCN 590
Query: 499 YFKWA 503
+F+WA
Sbjct: 591 FFQWA 595
>gi|70671411|emb|CAI59772.1| putative DNA lyase [Xanthoria polycarpa]
Length = 80
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 502
+ + P C+ H EPC + KK G GR F++CAR GP+ E N C F W
Sbjct: 5 FTKPAAPRCECHGEPCKTMLTKKSGMNCGRSFWMCARPLGPSGQKEKNTRWRCATFIW 62
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 118
+ V GDLN+A ID + + F R E F D FR+ +P+R YT
Sbjct: 141 VIVCGDLNVAHTEIDLKNPKTNHHNAGFTDEERGKFTELLDAGFIDTFRALYPDRTGIYT 200
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
W A N G RID+ + + + D HN V
Sbjct: 201 WWSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNEV 239
>gi|367003866|ref|XP_003686666.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
gi|357524968|emb|CCE64232.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
Length = 534
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H E CV + + +G++F+ C R +G ++N +++C +F+W
Sbjct: 488 PLCK-HGEKCVLKT-SRTSSNYGKKFWACKRPKGESNNEDSSCDHFEWV 534
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPE 112
L + + + + GDLN+A ID + + F RS E S + D FR +P+
Sbjct: 133 LRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELLKSGYIDTFRYFYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157
R++ Y+ W + + + N G RID+ + + D + H V
Sbjct: 193 RKDEYSWWSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIHQSV 237
>gi|226358180|ref|YP_002787919.1| Exodeoxyribonuclease III [Deinococcus deserti VCD115]
gi|226319823|gb|ACO47817.1| putative Exodeoxyribonuclease III [Deinococcus deserti VCD115]
Length = 270
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRS 93
+ L + S++ + L R+ VVGD N+AP D + AG R FR+
Sbjct: 118 YKLEWLSAVRAWLQLELMAHPRLAVVGDFNVAPEDRDVHSPKRWAGQVLVSEPERQAFRA 177
Query: 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQF--NYGTRIDHILCAG 142
+L D FR HP+ ++ W N G F N+G RIDH+L +G
Sbjct: 178 LL---DLGLHDAFR-LHPQPERVFSWW--NYGRLGFPRNWGLRIDHVLVSG 222
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + I V GDLN+A ID R +AG F+ E R F L G + D +
Sbjct: 134 LDKQKPIIVCGDLNVAHNEIDLKNPKSNRKNAG--FSDEE-RAKFTEFL---GNGYIDTY 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
R +P+R AYT W A N G RID+ C L K
Sbjct: 188 RYFYPDREGAYTWWSYMFNARANNAGWRIDY-FCVSERLQDK 228
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 118
+ + GDLN+A ID + + F R + E S F D FR+ +P+R AYT
Sbjct: 139 VVLCGDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTELLSSGFTDTFRALYPDRTGAYT 198
Query: 119 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
W A + N G RID+ + + L + D
Sbjct: 199 WWSYRFNARKNNAGWRIDYFIVSDRLLPRVRD 230
>gi|308505902|ref|XP_003115134.1| CRE-EXO-3 protein [Caenorhabditis remanei]
gi|308259316|gb|EFP03269.1| CRE-EXO-3 protein [Caenorhabditis remanei]
Length = 334
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 49 RWEFLLCQGRR-------IFVVGDLNIAPAAIDRCDAGPDFAKNEF-------RIWFRSM 94
RWE LL + + + GDLN+A ID + P+ +N+ R WF M
Sbjct: 108 RWEKLLTEKMKEMNEKKPVIYGGDLNVAHNEIDLKN--PESNRNKTAGFTDQERGWFTDM 165
Query: 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
L F D FR HPE ++ Y+ W + + + G R+D+ + + +
Sbjct: 166 L---NMGFTDTFRQMHPESKK-YSFWSYLANSREKDVGWRLDYYVVSNRIM--------K 213
Query: 155 NFVTCHVN-----ECDILI-DYKRW 173
N C +N E DIL+ D + W
Sbjct: 214 NVRKCTLNQLFELETDILVLDLQLW 238
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D +++ S L+E+G F D
Sbjct: 136 LEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKI-----SELLEAG--FIDT 188
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 158
+R +P++ Y+ W A N G RID+ L + + D + H VT
Sbjct: 189 YRYFYPDKEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMEVT 241
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRI 89
+LE+ L+F S + L+ G I + GD NIA ID + P F E R
Sbjct: 118 RLEYKLNFCSDLLDYCNSLVENGENIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEE-RE 176
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
W L + D+FR +P + YT W A + N G RID+
Sbjct: 177 WMSKFL---NSGYIDIFRYLYPNEIK-YTWWSYRFKAREKNIGWRIDY 220
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 39/145 (26%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 116
+ GDLN+A ID + + + F R S L+ G F D FR +PE+ ++
Sbjct: 139 VIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEG--FVDSFRHLYPEKDQS 196
Query: 117 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 176
YT W + + N G RID+ + + D
Sbjct: 197 YTWWSYMSKVRERNIGWRIDYFIVSDRLKDSLKD-------------------------- 230
Query: 177 NAPSYRWKGGMSTRLEGSDHAPVYM 201
GM T + GSDH PVY+
Sbjct: 231 --------AGMHTDVLGSDHCPVYI 247
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 29 ELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFR 88
E + RI+L + + + ++ L + + + + GDLN+A ID + + +
Sbjct: 132 EKLARIELRMDWD---AAFRKYVSDLDKKKPVLICGDLNVAHNPIDLKNPKQNEQNAGYS 188
Query: 89 IWFR---SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
I R S L+ SG F D FR +P++ +AY+ W A + N G RID+ L +
Sbjct: 189 IQERQGFSTLLASG--FTDSFRYLYPDKTDAYSWWSYRFHAREKNIGWRIDYWLAS 242
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F ++L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRF 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 190 LYPDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|303389730|ref|XP_003073097.1| exodeoxyribonuclease III [Encephalitozoon intestinalis ATCC 50506]
gi|303302241|gb|ADM11737.1| exodeoxyribonuclease III [Encephalitozoon intestinalis ATCC 50506]
Length = 331
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 37/113 (32%)
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R W ++ LV+SG + D +R H R E+YTCW + N GTRID+IL ++
Sbjct: 228 RKWLKN-LVDSG-EYIDTYRILHT-RPESYTCWNTMLNLRPRNLGTRIDYILIPSGFFYK 284
Query: 148 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVY 200
D CDI ++ GSDH PVY
Sbjct: 285 LKD-------------CDI---------------------QPKIYGSDHCPVY 303
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN++ ID + P F+ E R F +L E F D +R
Sbjct: 134 LDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE-REKFTKILEEG---FVDTYRF 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 190 LYPEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 43/153 (28%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + + F K E + +VE+G D FR
Sbjct: 136 LEETKPVIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREKF--DQIVENG--LVDAFRF 191
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 168
++PE AYT W GA N G RID+ + + +T + E I
Sbjct: 192 RYPEAVGAYTWWSYMGGARARNIGWRIDYFVVS-------------EVLTSRIQEVKIRA 238
Query: 169 DYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
D + GSDH PV M
Sbjct: 239 D---------------------VTGSDHCPVEM 250
>gi|254000228|ref|YP_003052291.1| exodeoxyribonuclease III Xth [Methylovorus glucosetrophus SIP3-4]
gi|253986907|gb|ACT51764.1| exodeoxyribonuclease III Xth [Methylovorus glucosetrophus SIP3-4]
Length = 260
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
F S + E L GR + + GD NIA D + + + F R W
Sbjct: 124 FKFSVMTRFLVHLEALRAAGRDVVICGDWNIAHKEADLKNWKGNKKNSGFLPEERAWLTD 183
Query: 94 MLVESGGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ G + DV+R HP+ E YT W + A N G RID+ + A P K
Sbjct: 184 LFDRVG--WVDVYRVLHPDTTDECYTWWSNRGQAWAKNVGWRIDYQI-ATPYFAAKAVAA 240
Query: 153 SHNFVTCHVNECDILIDYKR 172
S + + ++IDY+R
Sbjct: 241 SIYKLERFSDHAPLIIDYQR 260
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F +L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEEG---FIDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P++ +AY+ W GA N G R+D+ + +
Sbjct: 190 LYPDQEDAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|315637812|ref|ZP_07893002.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
gi|315482053|gb|EFU72667.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
Length = 252
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 34 IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RI 89
I+L + F + LL +G+ + + GD+N A ID + + F R
Sbjct: 114 IRLNHKMKFYADFLVYLNKLLKEGKEVIICGDVNTAHKEIDLTHPKANANTSGFLPIERA 173
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
W +L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 174 WIDDLLALG---FIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|440793198|gb|ELR14386.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 224
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 56 QGRRIFVVGDLNIAPAAIDRCDAG-PDFAKN-----EFRIWFRSMLVESGGSFFDVFRSK 109
Q R + V+GD+NIA +D ++ PD ++ E R W L ESG F D FR +
Sbjct: 145 QDRHVIVLGDVNIAHTELDIYNSDDPDINEHSGFLPEERKWLSGFL-ESG--FVDTFRER 201
Query: 110 HPERREAYTCWPSNTGA 126
HP YT W +GA
Sbjct: 202 HPGEGGHYTWWSPRSGA 218
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F ++L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRF 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 190 LYPDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 51 EFL--LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGG 100
EFL L + + + GDLN+A ID R +AG D +N F L++ G
Sbjct: 128 EFLQNLASHKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAF-----GQLLQLG- 181
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
D +R +P++ E YT W + N G RID+ L + Q D
Sbjct: 182 -LIDTYRHFYPDKTEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKD 230
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 10 DGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFL-----LCQGRRIFVVG 64
DG LL FY +C + R + + M + +FL L + + + G
Sbjct: 177 DGRLLTAEYEKFYLVCVYVPNAGRKLV----TLPKRMRWDEKFLQYLRDLDAKKPVILCG 232
Query: 65 DLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWP 121
D+N+A A ID + + F R + L+ G F D FR ++PE++ AYT W
Sbjct: 233 DMNVAHAEIDLANPKTNKKNAGFTQEERDGMTNLLSHG--FVDTFRQRYPEQKAAYTFWT 290
Query: 122 SNTGAEQFNYGTRIDHILCA 141
A N G R+D+ + +
Sbjct: 291 YMGNARAKNVGWRLDYFIAS 310
>gi|153951075|ref|YP_001397480.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
gi|152938521|gb|ABS43262.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
Length = 259
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 122 RLNFKMKFYTDFLVYLNKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 182 IDDLL---KLGFVDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 229
>gi|157374807|ref|YP_001473407.1| exonuclease III [Shewanella sediminis HAW-EB3]
gi|157317181|gb|ABV36279.1| exodeoxyribonuclease III [Shewanella sediminis HAW-EB3]
Length = 268
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 60 IFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVFRSK 109
I ++GD+NI+P +D P+ + E R W ++++ D FR
Sbjct: 147 IAIIGDINISPVDLDIGIGAPNAKRWLKTGKCSFQPEEREWLKTLM---DWGLVDTFREL 203
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
HPER E Y+ + + N G RID +L
Sbjct: 204 HPERSERYSWFDYRSKGFVDNRGLRIDVVLAT 235
>gi|119358281|ref|YP_912925.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
gi|119355630|gb|ABL66501.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
Length = 256
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 51 EFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
E LL +GR+I GD+N+A ID + G + E R + L DV
Sbjct: 133 ENLLLEGRQIVFTGDMNVAHRDIDVHRSQNKPGAVGLRAEERSSIDACLALG---LRDVM 189
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRID 136
R + PER + +T WP A + N G RID
Sbjct: 190 RERAPERNDLFTWWPYWKNARERNLGWRID 219
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRI 89
+++LS S+ M L + + + + GDLN A ID R +AG +E R
Sbjct: 356 QWDLSLSNYMKE-----LEKSKPVILNGDLNCAHQEIDIYNPAGNRRNAG---FTDEERQ 407
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 149
F + + G F D FR +HP+ YT W G + N G R+D+ L + Q H
Sbjct: 408 SFETNFLSRG--FVDSFRKQHPDVV-GYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVH 464
Query: 150 D 150
D
Sbjct: 465 D 465
>gi|73539900|ref|YP_294420.1| AP endonuclease [Ralstonia eutropha JMP134]
gi|72117313|gb|AAZ59576.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ralstonia
eutropha JMP134]
Length = 258
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR I + GD+NIA ID + + + F R W + G + DVFR
Sbjct: 137 LKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGQLFDMHG--YVDVFRQ 194
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
P R E YT W + A N G RID+ L
Sbjct: 195 LDP-RPEQYTWWSNRGQAYAKNVGWRIDYHLA 225
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V DLN+A ID R +AG +E R F+ L F D FR +PE
Sbjct: 143 VVVCWDLNVAHKEIDLKNPKPNRWNAG---FTDEEREGFQKFL---NAGFIDTFRYFYPE 196
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAG 142
+ EAY+ W + A N G RID+ L +
Sbjct: 197 KTEAYSWWSNFAFARDRNIGWRIDYFLTSW 226
>gi|385809097|ref|YP_005845493.1| exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
gi|383801145|gb|AFH48225.1| Exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
Length = 262
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L++ L F + + L+ QGR+I V GD+N A ID + + F R W
Sbjct: 122 RLKYKLDFYDAFLEYAKKLIQQGRKIIVCGDVNTAHKEIDLARPKENEKTSGFLPIERQW 181
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
L F D FR + ++ YT W T A + N G RID+ +
Sbjct: 182 IDKFL---ANGFVDTFRMFN-DQPGNYTWWDMQTRARERNVGWRIDYFFVS 228
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R F +L E F D +R
Sbjct: 134 LDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEEG---FIDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P++ +AY+ W GA N G R+D+ + +
Sbjct: 190 LYPDQEDAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|430807985|ref|ZP_19435100.1| exodeoxyribonuclease III [Cupriavidus sp. HMR-1]
gi|429499679|gb|EKZ98088.1| exodeoxyribonuclease III [Cupriavidus sp. HMR-1]
Length = 258
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR I + GD+NIA ID + + + F R W + G + DVFR
Sbjct: 137 LKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDNHG--YVDVFRQ 194
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
P R E YT W + A N G RID+ L
Sbjct: 195 LDP-RPEQYTWWSNRGQAYAKNVGWRIDYHLT 225
>gi|302393810|sp|Q8TAT5.3|NEIL3_HUMAN RecName: Full=Endonuclease 8-like 3; AltName: Full=DNA glycosylase
FPG2; AltName: Full=DNA glycosylase/AP lyase Neil3;
AltName: Full=Endonuclease VIII-like 3; AltName:
Full=Nei-like protein 3
Length = 605
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVGKDGENKGRQFYACPLPR------EAQCGFFEWA 547
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 56 QGRRIFVVGDLNIAPAAIDRC-DAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSK 109
+G + +GDLN+A ++ D AK E R F + L F D FR
Sbjct: 364 RGVPVLWLGDLNVAHTNLEVWNDGAKHLAKQAGVTAEERASFEAQL---NAGFIDAFRRL 420
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
HP + Y+ W G + N G R+D+ +C
Sbjct: 421 HPTAKGHYSYWSQRAGNREPNKGLRLDYFIC 451
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + V GDLN+A ID R +AG F E S+L++SG F D F
Sbjct: 133 LNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDEEREK--MSILLDSG--FTDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
R +P++ Y+ W + + N G RID+ L + + D Q H
Sbjct: 187 RYFYPDKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH 234
>gi|294629849|ref|ZP_06708409.1| exodeoxyribonuclease III [Streptomyces sp. e14]
gi|292833182|gb|EFF91531.1| exodeoxyribonuclease III [Streptomyces sp. e14]
Length = 267
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 32 VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF---- 87
VR EF L++ + R GR + V GD NIA D + + + F
Sbjct: 124 VRFMGEF-LAYLKELRER---AAADGREVLVCGDWNIAHQRADLKNWRGNLKNSGFLPEE 179
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 137
R W +L G + DV R+ HP+ Y+ W A + G RID+
Sbjct: 180 REWLTQVLTPEAGGYVDVVRALHPDVEGPYSWWSYRGRAFDNDTGWRIDY 229
>gi|427428121|ref|ZP_18918163.1| Exodeoxyribonuclease III [Caenispirillum salinarum AK4]
gi|425882822|gb|EKV31501.1| Exodeoxyribonuclease III [Caenispirillum salinarum AK4]
Length = 260
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 60 IFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ + GD N+ P D D AG + E R FR++L D +R+ H E
Sbjct: 145 LLIGGDYNVCPTDYDVYDPQGWAGDALCRPETREAFRALLWLG---LTDTYRAFHKEPHR 201
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCAG 142
Y+ W GA Q + G RIDH+L +G
Sbjct: 202 -YSFWDYQGGAWQRDLGLRIDHLLLSG 227
>gi|56476029|ref|YP_157618.1| exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
gi|56312072|emb|CAI06717.1| Exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
Length = 253
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 15/94 (15%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHP 111
+R+ + GD NIAP DR DA PD+ K+E R F ++ +G D +R P
Sbjct: 138 QRLVLTGDFNIAPE--DR-DAHPDW-KDEIHVSPAERAAFAAL---TGLGLADAYRL-FP 189
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+ ++++ W GA + N+G RIDHIL + P L
Sbjct: 190 QDDKSFSWWDYRMGAFRRNFGLRIDHILLS-PAL 222
>gi|405122849|gb|AFR97615.1| DNA topoisomerase type I [Cryptococcus neoformans var. grubii H99]
Length = 959
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+PLCK + A VVK+ GP GR+F+ C +NP+A CG+F+W
Sbjct: 820 GVPLCKCGLDAAFATVVKE-GPNKGRQFWACP------NNPKARCGFFQW 862
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + GDLN+A A ID R +AG F E + M V F D F
Sbjct: 134 LSQKKPLIYCGDLNVAFADIDLKNPKTNRKNAG--FTDEERQ----KMAVVQASGFTDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P+ Y+ W GA N G RID+ + +
Sbjct: 188 RYLYPDLEGVYSWWSYMGGARSKNIGWRIDYFMVS 222
>gi|387826172|ref|YP_005805625.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
gi|312147931|gb|ADQ30590.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
Length = 255
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 46/182 (25%)
Query: 31 IVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----- 85
++R +L + L+F S + + L+C G+ + + GD NIA ID PD ++
Sbjct: 112 VLRRRLGYKLNFLSYVENLADSLVCDGKNVVICGDFNIAHTEIDLI--SPDSNRDSPGYY 169
Query: 86 -EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144
E W L + F +F +K P YT W T A + N G RID+ +
Sbjct: 170 IEETTWLDDFLNKGYVDTFRIF-NKDP---GYYTWWSYRTRARERNMGWRIDYFIV---- 221
Query: 145 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
+ F +V + IL ++ GSDH PV++ L
Sbjct: 222 ---------NEFFKRNVEKSLIL---------------------DKVMGSDHCPVFLELA 251
Query: 205 EV 206
+V
Sbjct: 252 DV 253
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E R ++E G F D +R
Sbjct: 134 LDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKITR--VLEEG--FIDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 190 LYPEQEGAYSWWSYRMGARAKNIGWRLDYFIISERLKHKILD 231
>gi|397671032|ref|YP_006512567.1| putative exodeoxyribonuclease III [Propionibacterium propionicum
F0230a]
gi|395142431|gb|AFN46538.1| putative exodeoxyribonuclease III [Propionibacterium propionicum
F0230a]
Length = 305
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 57 GRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
GR +VGD NIA D R + D E R WF + L DV RS HP+
Sbjct: 181 GREYVIVGDFNIANTRYDLKNWRSNQRTDGFLPEERDWFTAQLGPR--RLVDVVRSMHPD 238
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH----QKHDLQSHNFVTCHVNECDILI 168
+ Y+ W A + G RID+ L A P L + L+ ++ + + C + +
Sbjct: 239 QDGPYSWWSWRGQAFANDAGWRIDYHL-ATPKLARAAVRAESLREADYDSRVSDHCPVAV 297
Query: 169 DY 170
DY
Sbjct: 298 DY 299
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + + S+L+ESG F D
Sbjct: 133 LNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SVLLESG--FIDS 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P++ Y+ W A + N G RID+ L +
Sbjct: 186 FRYLYPKQEGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|110633439|ref|YP_673647.1| exodeoxyribonuclease III [Chelativorans sp. BNC1]
gi|110284423|gb|ABG62482.1| Exodeoxyribonuclease III [Chelativorans sp. BNC1]
Length = 259
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
+ ++ L++ + L G I + GD N+AP ID + + E R
Sbjct: 117 KFDYKLAWLERLRKHATALRKTGAPIVLAGDFNVAPTDIDIYPTKSWGDNALIQPESRAA 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +L G S+ D R HPE+R YT W Q + G R+DH+L +
Sbjct: 177 FRRLL---GRSWTDGIRLLHPEQR-IYTFWDYKRLRWQRDAGLRLDHLLLS 223
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN++ ID + P F+ E R F +L E F D +R
Sbjct: 134 LDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE-REKFTKILEEG---FVDTYRF 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
+PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 190 LYPEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
FR +P+ Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH 234
>gi|359407598|ref|ZP_09200075.1| exodeoxyribonuclease III [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356677637|gb|EHI49981.1| exodeoxyribonuclease III [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 262
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIW 90
+ ++ L++ + R E LL + + GD N+ P ID D G + R
Sbjct: 120 KFDYKLAWMYRLQARAETLLAMETPVVLAGDYNVMPQEIDCYDPPAWEGDALWHPDSRAA 179
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
F +L + D R+ HP + Y+ W GA Q + G RIDH+L
Sbjct: 180 FFKLL---NLGYTDAIRAIHPLGAQ-YSYWDYQAGAWQRDNGIRIDHLL 224
>gi|237749208|ref|ZP_04579688.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380570|gb|EEO30661.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 260
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 37 EFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFR 92
E F Y + L GR + GD NIA ID + + + F R W
Sbjct: 121 EAKFRFMDEFYPYLKKLKDSGREFVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLT 180
Query: 93 SMLVESGGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+ E G + DV+R HP+ EAYT W + A N G RID+ + A P + +K
Sbjct: 181 DVFDELG--WVDVYRLLHPDTTGEAYTWWSNRGQAYAKNVGWRIDYQI-ATPGIAKK 234
>gi|386826315|ref|ZP_10113422.1| exodeoxyribonuclease III [Beggiatoa alba B18LD]
gi|386427199|gb|EIJ41027.1| exodeoxyribonuclease III [Beggiatoa alba B18LD]
Length = 255
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 58 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 113
+ + + GD NIA ID + + + F R W +L E+G S D FR +P
Sbjct: 141 QHVVICGDWNIAHKPIDLKNWKGNVKNSGFLPEERAWMDKLLTETGYS--DAFRVVNPSA 198
Query: 114 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE-CDILIDY 170
E YT W + A N G RID+ + + Q H Q+ + T ++ +LIDY
Sbjct: 199 -EQYTWWSNRGQAWAKNVGWRIDYQIISDNL--QAHVKQAEIYTTQRFSDHAPLLIDY 253
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L Q + + + GD+N+A ID + + F + R S L+E G F D FR+ +
Sbjct: 134 LEQTKPVIICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDTFRTLY 191
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
P++ AYT W A + N G RID+ C L +
Sbjct: 192 PDKTGAYTWWSYMFKAREKNVGWRIDY-FCISEALKDR 228
>gi|94309094|ref|YP_582304.1| exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
gi|93352946|gb|ABF07035.1| Exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
Length = 258
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS 108
L GR I + GD+NIA ID + + + F R W + G + DVFR
Sbjct: 137 LKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFDNHG--YVDVFRQ 194
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHIL 139
P R E YT W + A N G RID+ L
Sbjct: 195 LDP-RPEQYTWWSNRGQAYAKNVGWRIDYHL 224
>gi|419689247|ref|ZP_14217547.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380663551|gb|EIB79185.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
Length = 252
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLNKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|419627919|ref|ZP_14160809.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23263]
gi|380606030|gb|EIB25965.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23263]
Length = 252
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYTDFLVYLNKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFVDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 49 RWEFL-------LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG- 100
RWE L L + + + GD+N++ ID + + F R + E G
Sbjct: 576 RWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGL 635
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVT 158
F D FR +P+R+ AYT W A N G R+D+ L + + + +H+++S +
Sbjct: 636 GFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGS 695
Query: 159 CHVNECDILI 168
H C I I
Sbjct: 696 DH---CPITI 702
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 59 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 114
++ + GD NI AID D + + F R W L F D FR+ HPE +
Sbjct: 140 KLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFIDTFRALHPELQ 196
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 169
E YT W + N G RID+ + P + + N H + C +L++
Sbjct: 197 E-YTWWSYRFNSRAKNKGWRIDYCMVTEPVRSMLKEARILN-DAVHSDHCPMLLE 249
>gi|15594879|ref|NP_212668.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|195941668|ref|ZP_03087050.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi 80a]
gi|216264267|ref|ZP_03436259.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223888847|ref|ZP_03623438.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224532684|ref|ZP_03673301.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225548581|ref|ZP_03769628.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226321012|ref|ZP_03796557.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
gi|226321840|ref|ZP_03797366.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|2688454|gb|AAC66902.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|215980740|gb|EEC21547.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223885663|gb|EEF56762.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224512302|gb|EEF82686.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225370611|gb|EEH00047.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226233029|gb|EEH31782.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|226233613|gb|EEH32349.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
Length = 255
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 46/182 (25%)
Query: 31 IVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----- 85
++R +L + L F S + + L+C G+ + + GD NIA ID PD ++
Sbjct: 112 VLRRRLGYKLDFLSYVENLADSLVCDGKNVVICGDFNIAHTEIDLI--SPDSNRDSPGYY 169
Query: 86 -EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144
E W L + F +F +K P YT W T A + N G RID+ +
Sbjct: 170 IEETTWLDDFLNKGYVDTFRIF-NKDP---GYYTWWSYRTRARERNMGWRIDYFIV---- 221
Query: 145 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
+ F +V + IL ++ GSDH PV++ L
Sbjct: 222 ---------NEFFKRNVEKSLIL---------------------DKVMGSDHCPVFLELA 251
Query: 205 EV 206
+V
Sbjct: 252 DV 253
>gi|395839975|ref|XP_003792846.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease 8-like 3 [Otolemur
garnettii]
Length = 607
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 507 PRCSKHNRLCLLRVVRKDGKNKGRQFYACPL------RGEAQCGFFQWA 549
>gi|419643553|ref|ZP_14175271.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni ATCC
33560]
gi|380621081|gb|EIB39916.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni ATCC
33560]
Length = 252
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYADFLVYLNKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|419640953|ref|ZP_14172866.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23357]
gi|380618487|gb|EIB37613.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni LMG
23357]
Length = 252
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMKFYVDFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 48 YRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSF 102
YR EFL L + + + GD N+A ID + + F R L+E+G F
Sbjct: 136 YR-EFLSGLAKEKPVVTCGDFNVAHEEIDLKNPDTNHMNAGFSDEEREGFGKLLEAG--F 192
Query: 103 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
D FR +P+R +AY+ W A + N G RID+ L +
Sbjct: 193 VDSFRRLYPDREDAYSWWSYRMRARERNVGWRIDYFLVS 231
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 112
L + + + + GDLN+A ID + + F R+ + E F D FR H +
Sbjct: 136 LSKKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNKMTELLSDGFTDSFRYLHQD 195
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+++AY+ W + + N G RID+ L +
Sbjct: 196 KKDAYSWWSYFAKSRERNIGWRIDYFLVS 224
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 92
+++F L + ++ E+L L + + + + GDLN+A ID + P+ K F R
Sbjct: 115 RIDFRLQWEAAFR---EYLHQLDEKKPVIICGDLNVAHQNIDLKNWRPNRGKAGFSDEER 171
Query: 93 SMLVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ E F D FR +PE Y+ W A + N G RID+ L +
Sbjct: 172 NAFTELLNTGFTDTFRYLYPETTGVYSWWSYRFHARENNAGWRIDYFLVS 221
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + + GDLN+A ID R +AG F++ E + R +E+G F D F
Sbjct: 134 LDKKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSEQERGAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G R+D+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKEQIED 231
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID 74
+ I Y+ +G EL +LE+ +S+ + + L + + + V GDLN+A ID
Sbjct: 98 KFFFITVYTPNSGSELK---RLEYRMSWEED-FKNYLLALNKTKGVVVCGDLNVAHTEID 153
Query: 75 RCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNY 131
+ + F R + L+++G F D FR +P+ AY+ W A + N
Sbjct: 154 LKNPKSNMKNAGFTPEEREKFTKLLDAG--FIDTFRYYNPDLTGAYSWWSYRFNARKNNA 211
Query: 132 GTRIDHILCA 141
G RID+ L +
Sbjct: 212 GWRIDYFLVS 221
>gi|302820744|ref|XP_002992038.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
gi|300140160|gb|EFJ06887.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
Length = 654
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 85 NEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 117
N R W S+LV GG+F D FR HPER EAY
Sbjct: 483 NMSRQWLTSLLVSEGGAFSDAFRVFHPERAEAY 515
>gi|194226547|ref|XP_001492738.2| PREDICTED: endonuclease 8-like 3 [Equus caballus]
Length = 606
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
S P C H C RVV+K G GR+F+ C EA CG+F+WA
Sbjct: 503 ASSPRCSQHHRLCALRVVRKDGENKGRQFYACPLPR------EAQCGFFQWA 548
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 448 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
Q + S P C H + + R V K GP GR FFVC + E C +F+WA
Sbjct: 546 QWADLSFPFCD-HGKRSIMRTVLKIGPNNGRNFFVCPLGK------EKQCSFFQWA 594
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 52 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKH 110
+L + + + GDLN+A ID + + F RS + E + D FR +
Sbjct: 129 YLDALNKPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSKMTELLSHGYIDTFRYLY 188
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
P++++AYT W + + N G RID+ + +
Sbjct: 189 PDKKDAYTWWSYMFKSRERNAGWRIDYFIVS 219
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + + + + GDLN+A ID +A + + F R + L+ SG F D FR +
Sbjct: 133 LEEKKPVILCGDLNVAHTEIDLKNAKSNHGNSGFTQEERGKMTTLLSSG--FTDSFRYLY 190
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170
PE + Y+ W + N G RID+ + + + + HN + + C + ++
Sbjct: 191 PETTDKYSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEILGS-DHCPVFLEL 249
Query: 171 K 171
K
Sbjct: 250 K 250
>gi|193211783|ref|YP_001997736.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
gi|193085260|gb|ACF10536.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
Length = 253
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSK 109
L+ +G+ + + GD+N+A ID + R RS + +E G D+ R
Sbjct: 134 LIAEGQEVILAGDMNVALTEIDVHRSQNKPGATGLRPEERSAIEAHLELG--LHDIVREL 191
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+P++++ +T WP+ A + N G RID I + P L K
Sbjct: 192 NPDKKDLFTWWPNWKFARERNLGWRIDCIYLS-PALAGK 229
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 49 RWEFL-------LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG- 100
RWE L L + + + GD+N++ ID + + F R + E G
Sbjct: 549 RWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGL 608
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVT 158
F D FR +P+R+ AYT W A N G R+D+ L + + + +H+++S +
Sbjct: 609 GFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGS 668
Query: 159 CHVNECDILI 168
H C I I
Sbjct: 669 DH---CPITI 675
>gi|393766708|ref|ZP_10355262.1| exodeoxyribonuclease III Xth [Methylobacterium sp. GXF4]
gi|392727802|gb|EIZ85113.1| exodeoxyribonuclease III Xth [Methylobacterium sp. GXF4]
Length = 264
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWF 91
+ L+F + L+ + + + GD N+ P D D P+ +++ R F
Sbjct: 126 YKLAFMERLRIHARALMEDEKAVVLAGDYNVIPDPADAAD--PEAWRSDALFLLGTRAAF 183
Query: 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R++L E + D R+ P R YT W G Q N G RIDH+L +
Sbjct: 184 RAILAEG---YTDGLRACDP-RDGLYTFWDYQAGCWQRNAGIRIDHLLLS 229
>gi|419611477|ref|ZP_14145500.1| exodeoxyribonuclease III [Campylobacter coli H8]
gi|380588017|gb|EIB09176.1| exodeoxyribonuclease III [Campylobacter coli H8]
Length = 252
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|322434444|ref|YP_004216656.1| exodeoxyribonuclease III Xth [Granulicella tundricola MP5ACTX9]
gi|321162171|gb|ADW67876.1| exodeoxyribonuclease III Xth [Granulicella tundricola MP5ACTX9]
Length = 247
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRI 89
+ E+ L++ + + + L G + GD N+ P ID C + + E R
Sbjct: 107 KFEYKLAWMDRLMEQMKVWLGDGVPTVIGGDFNVIPEEID-CHKPASWVHDALFQPESRA 165
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
+R ML E G + D FR+ HP +T W A + N G RIDH L
Sbjct: 166 RYRGML-ELG--YTDAFRTLHPGLGGQFTFWDYFRQAFESNRGIRIDHFLL 213
>gi|419589231|ref|ZP_14125035.1| exodeoxyribonuclease III [Campylobacter coli 317/04]
gi|380567993|gb|EIA90482.1| exodeoxyribonuclease III [Campylobacter coli 317/04]
Length = 252
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + + LL G I + GD+N A ID + + F R W
Sbjct: 115 RLSFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + + +E Y+ W A + N G RID+ +
Sbjct: 175 IDDLL---KLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDYFFIS 222
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG +E R F +L F D FR+ +P+
Sbjct: 139 VVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRALYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A + N G RID+ L +
Sbjct: 193 KVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
Length = 254
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 42/173 (24%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L+F + F ++ + + +G ++ + GD+N A ID + + ++ F R W
Sbjct: 118 RLQFKMDFYDGFWHDVDERVARGEKVIICGDVNTAHREIDLKNPKSNAKRSGFLPIEREW 177
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
G + D +R +PE + Y+ W A + N G RID+ +
Sbjct: 178 MDHFF---AGGYIDTYRYFYPE-QVTYSWWSYRFNARKNNAGWRIDYFFASD-------- 225
Query: 151 LQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203
N D+L D + T + GSDH P+ + L
Sbjct: 226 -----------NAKDLLAD---------------AAIHTDVTGSDHCPISLTL 252
>gi|148284985|ref|YP_001249075.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|146740424|emb|CAM80902.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
Length = 273
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPE 112
G I + GD N+AP D A F + + R ++ +F D++R H +
Sbjct: 156 GESIILGGDFNVAPYDNDVYSAIELQNTTCFTLPEKQYIRKLI---NHNFIDIYRLFH-Q 211
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R++ +T W GA + N G RID+ILC
Sbjct: 212 RQKKFTWWDYRAGAFERNLGMRIDYILCT 240
>gi|154175230|ref|YP_001407411.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
gi|112802161|gb|EAT99505.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
Length = 252
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L + + F + + L+ QG + GD+N A ID + + + F R W
Sbjct: 115 RLAYKMDFYAKFLAYIDALVAQGLDVIFCGDVNTAHREIDLKNPKANAKTSGFLPIERAW 174
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
++ F D FR H + +AY+ W A N G RID+ +
Sbjct: 175 LDEVVAHG---FIDTFRQAHGDVADAYSWWSYRFNARAKNVGWRIDYFFIS 222
>gi|189184108|ref|YP_001937893.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189180879|dbj|BAG40659.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
Length = 264
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 57 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPE 112
G I + GD N+AP D A F + + R ++ +F D++R H +
Sbjct: 147 GESIILGGDFNVAPYDNDVYSAIELQNTTCFTLPEKQYIRKLI---NHNFIDIYRLFH-Q 202
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R++ +T W GA + N G RID+ILC
Sbjct: 203 RQKKFTWWDYRAGAFERNLGMRIDYILCT 231
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 49 RWEFL-------LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG- 100
RWE L L + + + GD+N++ ID + + F R + E G
Sbjct: 549 RWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGL 608
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVT 158
F D FR +P+R+ AYT W A N G R+D+ L + + + +H+++S +
Sbjct: 609 GFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGS 668
Query: 159 CHVNECDILI 168
H C I I
Sbjct: 669 DH---CPITI 675
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG +E R F +L F D FR+ +P+
Sbjct: 139 VVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRALYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A + N G RID+ L +
Sbjct: 193 KVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|221218058|ref|ZP_03589524.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224533538|ref|ZP_03674127.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225549668|ref|ZP_03770634.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|387827436|ref|YP_005806718.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
gi|221192006|gb|EEE18227.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224513211|gb|EEF83573.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369945|gb|EEG99392.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|312149695|gb|ADQ29766.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
Length = 255
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 46/182 (25%)
Query: 31 IVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----- 85
++R +L + L F S + + L+C G+ + + GD NIA ID PD ++
Sbjct: 112 VLRRRLGYKLDFLSYVENLADSLVCDGKNVVICGDFNIAHTEIDLI--SPDSNRDSPGYY 169
Query: 86 -EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144
E W L + F +F +K P YT W T A + N G RID+ +
Sbjct: 170 IEETTWLDDFLNKGYVDTFRIF-NKDP---GYYTWWSYRTRARERNMGWRIDYFIV---- 221
Query: 145 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204
+ F +V + IL ++ GSDH PV++ L
Sbjct: 222 ---------NEFFKRNVEKSLIL---------------------DKVMGSDHCPVFLELA 251
Query: 205 EV 206
+V
Sbjct: 252 DV 253
>gi|406905854|gb|EKD47195.1| hypothetical protein ACD_66C00177G0002 [uncultured bacterium]
Length = 261
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 35 QLEFNLSFSSSMYYRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----R 88
+L++ + F Y E L + + + GD N A ID + ++ F R
Sbjct: 123 RLDYKIKFYKRFY---ELLDEYAGKKPVMICGDFNTAHHEIDIARPKANETRSGFLPMER 179
Query: 89 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 140
W + E G + D FR K+P++R+ Y+ W T A + N G RID+
Sbjct: 180 KWLDKL--EDKG-YIDTFRFKYPKKRDIYSWWDVITHARERNVGWRIDYFWA 228
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112
+ V GDLN+A ID R +AG +E R F +L F D FR+ +P+
Sbjct: 139 VVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRALYPD 192
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A + N G RID+ L +
Sbjct: 193 KVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|297200306|ref|ZP_06917703.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197709420|gb|EDY53454.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 274
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 55 CQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
GR + V GD NIA D R + E R W +L + G + DV RS H
Sbjct: 150 ADGREVVVCGDWNIAHQQADLKNWRANQKSSGFLPEERAWLSRVLEPTDGGYVDVVRSLH 209
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDH 137
P+ Y+ W A + G RID+
Sbjct: 210 PDVEGPYSWWSYRGRAFDNDSGWRIDY 236
>gi|120610799|ref|YP_970477.1| exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
gi|120589263|gb|ABM32703.1| Exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
Length = 262
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIW 90
+ ++ L++ + R L + + + GD NI P D G ++E R
Sbjct: 117 KFDYKLAWLDRLARRAGVLRDRPEPVVLAGDFNIIPTERDVYKPGAWVDDALFRSEVRDA 176
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
FR+ LV+SG + D R+ HP+ YT W Q N G RIDH+L H+ D
Sbjct: 177 FRA-LVDSG--WTDALRAVHPDE-TVYTFWDYLRQRFQRNAGLRIDHLLLNPAAAHRLQD 232
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 58 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
+ + GD+N+A +ID R AG +E R F S+L F D FR +H
Sbjct: 157 KPVIFSGDMNVAHESIDLKNPKANRRSAG---FTDEERAGFTSLL---SAGFVDTFRFQH 210
Query: 111 PERREAYTCWPSNTGAEQF-NYGTRIDHILCA 141
P+ EAY+ W + + N G RID+ L +
Sbjct: 211 PDTIEAYSWWAQMSKTSKINNTGWRIDYYLVS 242
>gi|409122308|ref|ZP_11221703.1| exodeoxyribonuclease [Gillisia sp. CBA3202]
Length = 259
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRI 89
+LEF L F + + L Q + + GD NI AID R F E R
Sbjct: 118 RLEFKLQFMADFQRYVDILKTQIPNLIICGDYNICHEAIDIHDPVRLKNTSGFLPVE-RK 176
Query: 90 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
W + +SG F D FR + E + Y+ W GA N G RID+ L +
Sbjct: 177 WIDGFM-KSG--FIDTFRYFNKEATDQYSWWSYRAGARGNNKGWRIDYNLVS 225
>gi|406574827|ref|ZP_11050545.1| exodeoxyribonuclease III [Janibacter hoylei PVAS-1]
gi|404555756|gb|EKA61240.1| exodeoxyribonuclease III [Janibacter hoylei PVAS-1]
Length = 307
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIW 90
++ F SF+ + + GR ++GDLN+A +D R + + E R W
Sbjct: 163 KMGFLASFARQLDRSRKTARAAGREFLLLGDLNVAHTRLDVTNWRSNQKSEGFLPEEREW 222
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F S++ S + DV R++HP+ + W GA + G RID+ L A P L ++
Sbjct: 223 FDSIV--SPRTLVDVVRAQHPDTTGPMSWWSWMGGAFDRDTGWRIDYHL-ATPGLAKR 277
>gi|429194382|ref|ZP_19186475.1| exodeoxyribonuclease III [Streptomyces ipomoeae 91-03]
gi|428669902|gb|EKX68832.1| exodeoxyribonuclease III [Streptomyces ipomoeae 91-03]
Length = 267
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 32 VRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF---- 87
VR EF L++ + R GR + V GD NIA D + + + F
Sbjct: 124 VRFMGEF-LTYLKGLRER---AAADGREVVVCGDWNIAHREADLKNWRGNVKNSGFLPEE 179
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH-ILCAG 142
R W + E G++ DV R+ HP+ YT W A + G RID+ + AG
Sbjct: 180 REWLGRVFDEGDGAYVDVMRALHPDVEGPYTWWSYRGRAFDNDSGWRIDYQVATAG 235
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + + GD+N+A ID + P F+ E + +M + SG F D FR
Sbjct: 133 LDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKF--TMFLNSG--FIDTFRY 188
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
+P++ + Y+ W A + N G RID+ C L +K
Sbjct: 189 FYPDKTDEYSWWSYRFNARKNNAGWRIDY-FCVSDRLKEK 227
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + R + V GDLN+A ID + +AG NE R F ++L + D F
Sbjct: 133 LKKDRPVIVCGDLNVAHQEIDLKNWKTNQKNAG---FTNEERAKFTALL---DHGYTDTF 186
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 166
R +PE AY+ W A + N G RID+ + + +DL SH +T DI
Sbjct: 187 RHFYPELTGAYSWWSYRFNARKNNAGWRIDYFIVS-------NDLTSH--LTSASIHADI 237
Query: 167 L 167
L
Sbjct: 238 L 238
>gi|384440911|ref|YP_005657214.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni M1]
gi|307747194|gb|ADN90464.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni M1]
Length = 198
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
+L F + F + LL G I + GD+N A ID + + F R W
Sbjct: 61 RLNFKMKFYVDFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAW 120
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+L F D FR + E +E Y+ W A + N G RID+ +
Sbjct: 121 IDDLL---KLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDYFFIS 168
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSK 109
L + + + + GDLN A ID D + NE R F + + G F D FR +
Sbjct: 412 LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKG--FVDTFRKQ 469
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
HP AY+ W A + N G R+D+ L + + HD
Sbjct: 470 HPNV-VAYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 509
>gi|395205631|ref|ZP_10396262.1| exodeoxyribonuclease III [Propionibacterium humerusii P08]
gi|422441438|ref|ZP_16518248.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA3]
gi|422472377|ref|ZP_16548865.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA2]
gi|422572066|ref|ZP_16647637.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL044PA1]
gi|313835987|gb|EFS73701.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA2]
gi|314929662|gb|EFS93493.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL044PA1]
gi|314970515|gb|EFT14613.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA3]
gi|328906267|gb|EGG26042.1| exodeoxyribonuclease III [Propionibacterium humerusii P08]
Length = 297
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIW 90
++ F F + R + QGR V+GD NIA D + + F R W
Sbjct: 155 KMAFLAGFRDHLTRRCQECAAQGRHFLVIGDFNIAHENADLKNWKANQHNEGFLPEERQW 214
Query: 91 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
F +++ S + DV R++HP+ Y+ W A + G RID+ L A P L ++
Sbjct: 215 FDTIV--SPDTLVDVLRAQHPDINGPYSWWSWRGKAFINDAGWRIDYHL-ASPELAKR 269
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 60 IFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115
+ + GD N+A ID R + G +E R F S+L F D FR HP+
Sbjct: 152 VIMCGDFNVAHQEIDLKNPRSNRGSPGFSDEERSSFTSLL---DAGFADTFRMLHPDLEG 208
Query: 116 AYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A + N G RID+ L +
Sbjct: 209 AYSWWSYRFNARKNNAGWRIDYFLVS 234
>gi|395008770|ref|ZP_10392373.1| exodeoxyribonuclease III [Acidovorax sp. CF316]
gi|394313173|gb|EJE50248.1| exodeoxyribonuclease III [Acidovorax sp. CF316]
Length = 267
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 52 FLLCQGRRIFVV-GDLNIAPAAID----RCDAGPDFAKNEFRIWFRSML--VESGGSFFD 104
+ +G R F++ GD+NIA ID R + E R W +L + GG D
Sbjct: 138 LMTLKGEREFILCGDINIAHQQIDLKNWRSNQKNSGFLPEERAWMTKLLHTTDEGGGLID 197
Query: 105 VFRSKHPERRE-AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
V+R P + AYT W + A N G R+D+ L A P +
Sbjct: 198 VYRQLQPTTTDTAYTWWSNRGQAYANNVGWRLDYHL-ATPAM 238
>gi|313202195|ref|YP_004040853.1| exodeoxyribonuclease III xth [Methylovorus sp. MP688]
gi|312441511|gb|ADQ85617.1| exodeoxyribonuclease III Xth [Methylovorus sp. MP688]
Length = 260
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRS 93
F S + E L GR + + GD NIA D + + + F R W
Sbjct: 124 FKFSVMTRFLVHLEALRAAGRDVVICGDWNIAHKEADLKNWKGNKKNSGFLPEERAWLTD 183
Query: 94 MLVESGGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 152
+ G + DV+R HP+ E YT W + A N G RID+ + A P K
Sbjct: 184 LFDRVG--WVDVYRVLHPDTTDECYTWWSNRGQAWAKNVGWRIDYQI-ATPDFAAKAIAA 240
Query: 153 SHNFVTCHVNECDILIDYKR 172
S + + ++IDY+R
Sbjct: 241 SIYKLERFSDHAPLIIDYQR 260
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + V GDLN+A ID + P F+ E R F +L F D +R
Sbjct: 133 LEKNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEE-RAKFSELL---ASGFIDTYRY 188
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155
+P++ AY+ W A N G RID+ + + + + HN
Sbjct: 189 FYPDKEGAYSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHN 235
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 87
+LE+ +++ + + L Q + + V GDLN+A ID R +AG +E
Sbjct: 116 RLEYRMTWEDDFLHFLKQLKTQ-KPVIVCGDLNVAHQEIDLKNPKTNRKNAG---FTDEE 171
Query: 88 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 147
R F +L F D FR +P +++ Y+ W A + N G RID+ L A L++
Sbjct: 172 RYKFTQLL---SAGFTDTFRYFYPNQKDIYSWWSYRFKAREKNAGWRIDYFL-ASASLNE 227
Query: 148 K 148
K
Sbjct: 228 K 228
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + V GDLN+A ID R +AG D + +F + L+++G F D
Sbjct: 133 LEKKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 148
FR +P++ Y+ W A N G RID+ C CL +
Sbjct: 186 FRYFYPDQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 60 IFVVGDLNIAPAAID----RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 114
+ + GD N+A ID R + G P F+ E R F S+L F D FR HP+
Sbjct: 152 VIMCGDFNVAHQEIDLKNPRSNRGNPGFSDEE-RSSFTSLL---DAGFADTFRMLHPDLE 207
Query: 115 EAYTCWPSNTGAEQFNYGTRIDHILCA 141
AY+ W A + N G RID+ L +
Sbjct: 208 GAYSWWSYRFNARKNNAGWRIDYFLVS 234
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E + R++ E G F D +R
Sbjct: 134 LNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P++ AY+ W GA N G R+D+ + +
Sbjct: 190 LYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|400289237|ref|ZP_10791269.1| exonuclease III [Psychrobacter sp. PAMC 21119]
Length = 274
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 53 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----------EFRIWFRSMLVESGGS 101
L +GR + ++GD+NIAP ID G AK E R W+ +++
Sbjct: 140 LKAEGRSLIIMGDMNIAPEDID-IGIGDVNAKRWLKNRKTSFLPEEREWYAALMSR---E 195
Query: 102 FFDVFRSKHPERREAYTC--WPSNTGAEQFNYGTRIDHILC 140
D +R +PE E Y+ + S ++ G RIDHILC
Sbjct: 196 LTDTYRLYYPESTELYSWFDYRSRGFNDEPKRGLRIDHILC 236
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 105
L + + + + GDLN+A ID R +AG D + +F L+E+G F D
Sbjct: 133 LEENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGKF-----GELLEAG--FIDT 185
Query: 106 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P+ AY+ W A + N G RID+ L +
Sbjct: 186 FRYFYPDLEGAYSWWSYRFKAREKNTGWRIDYFLAS 221
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 112
L + + + + GD+N+A ID + + F RS + + F D FR+ +P
Sbjct: 239 LDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPN 298
Query: 113 RREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+ AYT W A N G R+D+ L +
Sbjct: 299 KEGAYTFWSYFANARSKNIGWRLDYFLVS 327
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 64 GDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 119
GD N+A ID ++ K+ + I S ++E+G F D FR HPE AY+
Sbjct: 146 GDFNVAHQEIDIARPKANYNKSAGYTQTEIDGISRMLEAG--FVDTFRHLHPETV-AYSW 202
Query: 120 WPSNTGAEQFNYGTRIDHILCAGPCL 145
W GA N G RID++L + +
Sbjct: 203 WSYRAGARAKNIGWRIDYVLTSQALI 228
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 60 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 111
+ V GDLN+A ID R +AG D + +F I L++SG F D FR +P
Sbjct: 139 VIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFRFFYP 191
Query: 112 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+R Y+ W A + N G RID+ L +
Sbjct: 192 DREGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 108
L + + + GDLN+A ID + P F+ E + R++ E G F D +R
Sbjct: 134 LNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRY 189
Query: 109 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
+P++ AY+ W GA N G R+D+ + +
Sbjct: 190 LYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,474,780
Number of Sequences: 23463169
Number of extensions: 334669424
Number of successful extensions: 759931
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 1340
Number of HSP's that attempted gapping in prelim test: 755139
Number of HSP's gapped (non-prelim): 4573
length of query: 510
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 363
effective length of database: 8,910,109,524
effective search space: 3234369757212
effective search space used: 3234369757212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)