BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010464
(510 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID CDA F ++ R W
Sbjct: 166 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 280 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 311
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 330 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 389
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 390 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 449
NK+P +DEK ER W+ +
Sbjct: 432 TVLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 450 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 43/215 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMD 226
Query: 93 SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 227 SLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
V +P P L +R+LP G Q ++ L+ E
Sbjct: 313 VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFR 92
+L F + F + R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 167 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMD 226
Query: 93 SML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
+L ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 227 GLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL------ 280
Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
+ ++ID + + + GSDH PV L
Sbjct: 281 ----------------GDRTLVIDTFQ-----------SSFLLPEVMGSDHCPVGAVL-S 312
Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 237
V +P P L + +LP G Q ++ L+
Sbjct: 313 VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLV 344
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 42/179 (23%)
Query: 35 QLEFNLSFSSSMYYRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EF 87
+LE+ +F ++ R E L+ +G R+I +VGD+NI ID D ++ E
Sbjct: 160 RLEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMES 219
Query: 88 RIWFRSMLVESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146
R W R +L+ S D+ R +HP R+ +TCW + NYGTRID+ L L
Sbjct: 220 RQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLP 279
Query: 147 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
V + DI+ + + GSDH PVY+ L E
Sbjct: 280 -------------WVQDADIMAE---------------------VMGSDHCPVYLDLKE 304
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 443 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 488
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLCK H CV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 506 PLCKMHHRRCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 548
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 345 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 404
Q L S HK+ +H + + N+ ++++ L H S+ P+
Sbjct: 456 AQSKLFSSAHKKFKPAHTSATELK----SYNSGLSNSELQTNRTRGHHSKSDGSPL---- 507
Query: 405 CSVHELHGVNSSVCSHDQDEKKGKRFLD---KERNNVALLEWRRIQQLMETSIPLCKGHK 461
C +H V V E KG++F EW + S P C+ H
Sbjct: 508 CKMHHRRCVLRVV--RKDGENKGRQFYACSLPRGAQCGFFEW------ADLSFPFCR-HG 558
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
+ + + V K GP G+ FFVC + + C +F+WA
Sbjct: 559 KRSIMKTVLKIGPNNGKNFFVCPLEK------KKQCNFFQWA 594
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 449 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
L+ P C H PC RVV+K G GR F+ C A EA CG+F+WA
Sbjct: 500 LLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFFEWA 548
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG+ F L +E EW + S P C H + + R V K GP G+
Sbjct: 525 ENKGRHFYACPLAREAQ-CGFFEW------ADLSFPFCN-HGKRSIMRTVLKIGPNNGKN 576
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 577 FFVCPLGK------EKQCNFFQWA 594
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L Q + + + GDLN+A ID R +AG F+ E + R +E+G F D F
Sbjct: 134 LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSF 187
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 150
R +P+ AY+ W GA N G RID+ + + Q D
Sbjct: 188 RHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3
Length = 605
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
P C H C+ RVV K G GR+F+ C EA CG+F+WA
Sbjct: 505 PRCSKHNRLCILRVVGKDGENKGRQFYACPLPR------EAQCGFFEWA 547
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 424 EKKGKRF----LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 479
E KG++F L +E EW + S P C H + + V K GP G+
Sbjct: 524 ENKGRQFYACPLPREAQ-CGFFEW------ADLSFPFC-NHGKRSTMKTVLKIGPNNGKN 575
Query: 480 FFVCARAEGPASNPEANCGYFKWA 503
FFVC + E C +F+WA
Sbjct: 576 FFVCPLGK------EKQCNFFQWA 593
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 49 RWEFL-------LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG- 100
RWE L L + + + GD+N++ ID + + F R + E G
Sbjct: 549 RWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGL 608
Query: 101 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVT 158
F D FR +P+R+ AYT W A N G R+D+ L + + + +H+++S +
Sbjct: 609 GFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGS 668
Query: 159 CHVNECDILI 168
H C I I
Sbjct: 669 DH---CPITI 675
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRSK 109
L + + + + GDLN A ID + + F I F + L++ G F D FR +
Sbjct: 418 LEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQ 475
Query: 110 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 165
HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 476 HPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 526
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 451 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
E ++P C H +P +VKK GP GR F+ C +GP ++ C +FKW
Sbjct: 165 ENNVPSCH-HSQPAKLVMVKKEGPNKGRLFYTC---DGPKAD---RCKFFKW 209
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+P V R V+K GP GR+F CA+ E CG+F+W
Sbjct: 903 QPAVTRTVQKDGPNKGRQFHTCAKPR------EQQCGFFQW 937
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 58 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 110
+ + + GDLN+A ID R +AG F E R F + L+E+G F D FR +
Sbjct: 196 KPLVLCGDLNVAHQEIDLKNPKGNRKNAG--FTPEE-REGF-TQLLEAG--FTDSFRELY 249
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
P++ AYT W A N G R+D+ + + L
Sbjct: 250 PDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 284
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 462 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 502
+P V R V+K GP GR+F CA+ E CG+F+W
Sbjct: 901 QPSVTRTVQKDGPNKGRQFHTCAKPR------EQQCGFFQW 935
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 451 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
E+ LC G ++P V+K GP GR ++ C + + C +F+WA
Sbjct: 1029 ESETVLCTGCQQPARQNTVRKNGPNLGRLYYKCPKPD--------ECNFFQWA 1073
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 51 EFL--LCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFF 103
E+L L + + + GD N+A ID + P F E R F ++L F
Sbjct: 151 EYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEE-RAGFTNLL---ATGFT 206
Query: 104 DVFRSKHPERREAYTCWPSNTGAEQF-NYGTRIDHILCA 141
D FR H + E YT W + + N G RID+ L +
Sbjct: 207 DTFRHVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTS 245
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 51 EFL--LCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFF 103
E+L L + + + GD N+A ID + P F E R F ++L F
Sbjct: 151 EYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEE-RAGFTNLL---ATGFT 206
Query: 104 DVFRSKHPERREAYTCWPSNTGAEQF-NYGTRIDHILCA 141
D FR H + E YT W + + N G RID+ L +
Sbjct: 207 DTFRHVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTS 245
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 35.8 bits (81), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 464 CVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503
V +VV+K GP G++F+ C+ P ++ E C +FKWA
Sbjct: 724 AVTKVVQKEGPNKGKKFYTCSL---PYTSSE-KCNFFKWA 759
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 54 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 110
L + I GDLN+A ID + + F I R S +E G + D +R +
Sbjct: 241 LNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFN 298
Query: 111 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
P + +YT W G N G R+D+ + +
Sbjct: 299 PGKEGSYTFWSYLGGGRSKNVGWRLDYFVVS 329
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 54 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 106
L + + + GDLN+A ID + +AG F E R F ML D F
Sbjct: 198 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG--FTPQE-RQGFGEML--QAVPLADSF 252
Query: 107 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
R +P AYT W A N G R+D+ L +
Sbjct: 253 RHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLS 287
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 362 DDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 421
+ + L+V + D+ LS+EE P+ H N+ T Y +HEL D
Sbjct: 105 EQGEARPSPGLSVGPAAGDSKLSEEEPPKKKHRRNRTTFTTY--QLHELERAFEKSHYPD 162
Query: 422 ---QDEKKGKRFLDKERNNVAL----LEWRRIQQLMETSIPL 456
++E GK L + R V +WRR ++L +S+ L
Sbjct: 163 VYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKL 204
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 60 IFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSFFD 104
I ++GD+NI+P+ +D +C P E R W++ L + G D
Sbjct: 146 ILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLP-----EERAWYQR-LYDYG--LED 197
Query: 105 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
FR +P + ++ + + N G RIDHIL +
Sbjct: 198 SFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVS 234
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 30/88 (34%)
Query: 443 WRRIQQLMETSI-------------PLCKGHKEPCVAR----VVKKPGPTFGRRFFVCAR 485
WRR+ ++ +++ PLCK C R VV GP G+ F+ C
Sbjct: 570 WRRLPSILTSTVNLQEPWKSGKMTPPLCK-----CGRRSKRLVVSNNGPNHGKVFYCC-- 622
Query: 486 AEGPASNPEAN---CGYFKWAFSKSKQK 510
P + N CGYFKW + K++
Sbjct: 623 ---PIGKYQENRKCCGYFKWEQTLQKER 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,308,360
Number of Sequences: 539616
Number of extensions: 8099040
Number of successful extensions: 22068
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 21603
Number of HSP's gapped (non-prelim): 466
length of query: 510
length of database: 191,569,459
effective HSP length: 122
effective length of query: 388
effective length of database: 125,736,307
effective search space: 48785687116
effective search space used: 48785687116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)