Query 010464
Match_columns 510
No_of_seqs 326 out of 1657
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 3.5E-37 7.7E-42 306.7 11.4 162 7-205 87-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 3.7E-35 8.1E-40 292.2 15.5 155 7-203 85-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 1.7E-30 3.7E-35 258.4 15.0 155 15-205 102-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 3.4E-28 7.3E-33 239.9 13.9 159 8-203 86-254 (254)
5 TIGR00633 xth exodeoxyribonucl 99.9 8.8E-26 1.9E-30 220.5 14.8 159 6-204 87-255 (255)
6 KOG1294 Apurinic/apyrimidinic 99.8 2.4E-20 5.2E-25 192.6 13.1 180 4-239 6-197 (335)
7 KOG1294 Apurinic/apyrimidinic 99.7 7.7E-17 1.7E-21 166.6 11.8 158 8-204 156-334 (335)
8 PF14529 Exo_endo_phos_2: Endo 99.5 1.2E-13 2.6E-18 119.6 8.0 98 16-145 1-99 (119)
9 PF06839 zf-GRF: GRF zinc fing 99.3 8E-13 1.7E-17 99.1 4.4 45 455-506 1-45 (45)
10 PRK05421 hypothetical protein; 99.0 4.1E-09 9E-14 105.7 12.3 114 15-206 149-262 (263)
11 COG3568 ElsH Metal-dependent h 98.9 1E-08 2.2E-13 103.1 10.3 126 15-206 133-258 (259)
12 PF03372 Exo_endo_phos: Endonu 98.9 2.9E-09 6.3E-14 99.8 5.9 105 15-144 121-230 (249)
13 KOG3873 Sphingomyelinase famil 98.7 5.5E-08 1.2E-12 100.9 10.8 154 4-207 120-294 (422)
14 TIGR03395 sphingomy sphingomye 98.5 9.4E-07 2E-11 90.1 12.8 104 15-144 134-245 (283)
15 PTZ00297 pantothenate kinase; 98.5 1E-06 2.3E-11 106.6 15.0 152 15-206 151-315 (1452)
16 COG3021 Uncharacterized protei 98.4 9.1E-07 2E-11 90.9 9.6 129 4-206 180-308 (309)
17 PLN03144 Carbon catabolite rep 98.1 1.8E-05 3.9E-10 88.4 11.4 52 15-72 418-470 (606)
18 PRK15251 cytolethal distending 97.8 9.7E-05 2.1E-09 75.2 9.9 48 15-72 151-199 (271)
19 KOG1956 DNA topoisomerase III 97.3 9.5E-05 2E-09 81.7 2.0 42 453-503 717-758 (758)
20 KOG2756 Predicted Mg2+-depende 97.3 0.00049 1.1E-08 69.7 6.1 101 15-140 205-308 (349)
21 KOG4399 C2HC-type Zn-finger pr 97.0 0.00031 6.8E-09 70.4 2.2 49 452-507 11-59 (325)
22 KOG2338 Transcriptional effect 96.7 0.02 4.3E-07 62.4 12.6 52 15-72 253-307 (495)
23 smart00476 DNaseIc deoxyribonu 96.5 0.0062 1.3E-07 62.4 6.8 48 15-71 143-190 (276)
24 COG2374 Predicted extracellula 95.5 0.018 3.9E-07 65.5 5.5 82 38-146 653-736 (798)
25 smart00128 IPPc Inositol polyp 95.1 0.11 2.4E-06 53.9 9.4 51 15-71 139-195 (310)
26 COG5239 CCR4 mRNA deadenylase, 91.5 1 2.2E-05 47.8 9.3 113 15-143 191-324 (378)
27 KOG0566 Inositol-1,4,5-triphos 90.4 0.78 1.7E-05 53.8 7.8 48 15-68 674-725 (1080)
28 KOG0620 Glucose-repressible al 90.1 0.59 1.3E-05 49.9 6.1 18 190-207 336-353 (361)
29 PLN03191 Type I inositol-1,4,5 89.3 1.7 3.7E-05 49.2 9.1 18 190-207 576-593 (621)
30 COG5411 Phosphatidylinositol 5 85.9 1.3 2.8E-05 48.1 5.6 16 191-206 312-327 (460)
31 PTZ00312 inositol-1,4,5-tripho 70.2 8.3 0.00018 40.4 5.4 56 15-71 81-142 (356)
32 PF06373 CART: Cocaine and amp 58.1 4.4 9.6E-05 33.5 0.7 36 452-501 34-69 (73)
33 PF09507 CDC27: DNA polymerase 56.7 3.9 8.5E-05 43.5 0.3 15 342-356 416-430 (430)
34 PF14639 YqgF: Holliday-juncti 51.1 38 0.00082 31.8 5.9 54 2-68 21-74 (150)
35 PF01396 zf-C4_Topoisom: Topoi 46.0 23 0.00049 25.8 2.8 19 479-505 20-38 (39)
36 PF05325 DUF730: Protein of un 30.8 61 0.0013 28.6 3.5 46 452-503 18-65 (122)
37 TIGR01766 tspaseT_teng_C trans 25.4 1.2E+02 0.0025 24.8 4.2 31 38-68 4-34 (82)
38 cd01829 SGNH_hydrolase_peri2 S 24.9 1.8E+02 0.0038 27.1 5.9 67 39-112 90-156 (200)
39 COG3115 ZipA Cell division pro 23.5 1E+02 0.0022 32.5 4.1 46 14-77 187-232 (324)
40 PF14552 Tautomerase_2: Tautom 22.9 1.9E+02 0.004 24.5 5.0 31 15-52 28-58 (82)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-37 Score=306.70 Aligned_cols=162 Identities=33% Similarity=0.546 Sum_probs=145.1
Q ss_pred ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC--
Q 010464 7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-- 79 (510)
Q Consensus 7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~-- 79 (510)
.|.|||+| .|.|+|+|+||+.....+|+. ||++|++.|+.+++++++.|++||||||||++|.+||.+++.
T Consensus 87 ~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~--yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~ 164 (261)
T COG0708 87 DDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFD--YKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKR 164 (261)
T ss_pred ccccCcEEEEEECCEEEEEEEcCCCCCCCCcchH--HHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhh
Confidence 57789999 699999999999986688998 999999999999999999999999999999999999988762
Q ss_pred ------CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccc
Q 010464 80 ------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQS 153 (510)
Q Consensus 80 ------~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~ 153 (510)
.+|.+.| |.||+.||. .| |+|+||.+||+... ||||+++.++++.|.|+||||||+|+.|+.
T Consensus 165 ~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~------- 232 (261)
T COG0708 165 WLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFHPEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD------- 232 (261)
T ss_pred hhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhCCCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------
Confidence 4677776 999999884 56 99999999999855 999999999888889999999999998863
Q ss_pred ccccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464 154 HNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205 (510)
Q Consensus 154 ~~~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~ 205 (510)
++++|.|+.+.|.|+ ..||||||+++|++
T Consensus 233 ------~~~~a~I~~~~rg~e-----------------~pSDHaPV~~e~~~ 261 (261)
T COG0708 233 ------RLKDAGIDREVRGWE-----------------KPSDHAPVWVELDL 261 (261)
T ss_pred ------HHHhcCccHHHhcCC-----------------CCCCcCcEEEEecC
Confidence 899999999877654 67999999999863
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=3.7e-35 Score=292.16 Aligned_cols=155 Identities=30% Similarity=0.490 Sum_probs=137.7
Q ss_pred ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC---
Q 010464 7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--- 78 (510)
Q Consensus 7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~--- 78 (510)
.|.|||+| .|+|+|||+||++. ..+|++ ||++|+..|.+++..+ ..+++||||||||++|.+||++++
T Consensus 85 ~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~--~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~ 160 (250)
T PRK13911 85 HDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLS--YRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTN 160 (250)
T ss_pred ccccCCEEEEEECCEEEEEEEecCCCC-CCcchH--HHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhc
Confidence 47899999 69999999999985 467999 9999999999999986 567899999999999999999864
Q ss_pred --CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccc
Q 010464 79 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 156 (510)
Q Consensus 79 --~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~ 156 (510)
..+|.+.| |+||+.+|. .| |+|+||.+||+..+.||||+++.+++..|+|+||||||+++.+..
T Consensus 161 ~~~~gf~~~e-r~~f~~~l~-~g--l~D~~R~~~p~~~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~---------- 226 (250)
T PRK13911 161 RKNAGFSDEE-RGKFSELLN-AG--FIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT---------- 226 (250)
T ss_pred CCCCCcCHHH-HHHHHHHHh-cC--CeehhhhhCCCCCCCCccCCCcCCccccCCcceEEEEEEChHHhh----------
Confidence 35788776 999999996 46 999999999997688999999999999999999999999998753
Q ss_pred cccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEE
Q 010464 157 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203 (510)
Q Consensus 157 ~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L 203 (510)
++.+|.|... ..+||||||+++|
T Consensus 227 ---~~~~~~i~~~---------------------~~~SDH~Pv~~~~ 249 (250)
T PRK13911 227 ---RLKDALIYKD---------------------ILGSDHCPVGLEL 249 (250)
T ss_pred ---hEEEEEECCC---------------------CCCCCcccEEEEe
Confidence 7888888653 4789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.97 E-value=1.7e-30 Score=258.41 Aligned_cols=155 Identities=24% Similarity=0.336 Sum_probs=129.6
Q ss_pred eEEEEEEeecCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC-----------CCCC
Q 010464 15 QIMVILFYSMCTGLE-LIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----------GPDF 82 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~-~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~-----------~~~f 82 (510)
.|+|+|+|+|+++.. .+++.. +|++|++.|..++..+++.+++||||||||++|..+|.+++ ..+|
T Consensus 102 ~~~v~n~y~P~~~~~~~~~~~~--~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~ 179 (268)
T PRK11756 102 NLTVINGYFPQGESRDHPTKFP--AKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSF 179 (268)
T ss_pred CEEEEEEEecCCCCCCcchhHH--HHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccC
Confidence 388999999998752 235666 89999999999999887888999999999999999998742 2356
Q ss_pred CchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccccccee
Q 010464 83 AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 162 (510)
Q Consensus 83 ~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~ 162 (510)
.+.| |.|++.++. .| |+|+||.+||+..+.||||+.+.++++.|+|+||||||+++.+. .+|+
T Consensus 180 ~~~e-r~~~~~l~~-~~--l~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~-------------~~v~ 242 (268)
T PRK11756 180 LPEE-REWLDRLMD-WG--LVDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLA-------------ERCV 242 (268)
T ss_pred CHHH-HHHHHHHHh-CC--cEeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHH-------------hhhe
Confidence 6655 999998773 45 99999999998557899999999998899999999999999875 3799
Q ss_pred eEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464 163 ECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205 (510)
Q Consensus 163 ~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~ 205 (510)
+|.|+.+.+. +..+||||||+++|.+
T Consensus 243 ~~~i~~~~~~-----------------~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 243 ETGIDYDIRG-----------------MEKPSDHAPIWATFKL 268 (268)
T ss_pred EeEEeHHHhC-----------------CCCCCCcccEEEEEeC
Confidence 9999876432 2468999999999863
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.95 E-value=3.4e-28 Score=239.93 Aligned_cols=159 Identities=28% Similarity=0.474 Sum_probs=134.7
Q ss_pred cCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC----
Q 010464 8 VRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---- 78 (510)
Q Consensus 8 d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~---- 78 (510)
|.+||++ .|+|+|+|+|+++....+|+. +|++|++.|..++..+...+.+||||||||+++..+|++++
T Consensus 86 ~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~--~r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~ 163 (254)
T TIGR00195 86 DAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLP--YKLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENR 163 (254)
T ss_pred ccCCCEEEEEECCEEEEEEEccCCCCCCCccHH--HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcC
Confidence 5789987 689999999998766677888 99999999999999987788999999999999999998764
Q ss_pred -CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccc
Q 010464 79 -GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157 (510)
Q Consensus 79 -~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~ 157 (510)
..+|.+.+ |.+|+.++. .| |+|+||.+||.. +.||||+.+.+++..|+|.||||||+++.+.
T Consensus 164 ~~~~~~~~e-~~~~~~l~~-~~--l~D~~r~~~~~~-~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~------------ 226 (254)
T TIGR00195 164 NHTGFLPEE-REWLDRLLE-AG--LVDTFRKFNPDE-GAYSWWDYRTKARDRNRGWRIDYFLVSEPLK------------ 226 (254)
T ss_pred CCcCcChHH-HHHHHHHHH-cC--CEeeecccCCCC-CCCcccCCcCCccccCCceEEEEEEECHHHH------------
Confidence 24677765 899999884 56 999999999984 6899999988888889999999999999875
Q ss_pred ccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEE
Q 010464 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCL 203 (510)
Q Consensus 158 ~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L 203 (510)
.+|.+|.|....+. ....|||+||+++|
T Consensus 227 -~~v~~~~i~~~~~~-----------------~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 227 -ERCVDCGIDYDIRG-----------------SEKPSDHCPVVLEF 254 (254)
T ss_pred -hhhhEEEEcHHHhc-----------------CCCCCCcccEEEeC
Confidence 27899999864321 13679999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=8.8e-26 Score=220.51 Aligned_cols=159 Identities=30% Similarity=0.534 Sum_probs=129.8
Q ss_pred EecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC-
Q 010464 6 LIVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG- 79 (510)
Q Consensus 6 ~~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~- 79 (510)
..|.+||++ .|+|+|||+|+++....+|.. +|+.|++.|...+..++..+.+|||+||||+++..+|+.+..
T Consensus 87 ~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~--~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~ 164 (255)
T TIGR00633 87 EHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLE--YKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKE 164 (255)
T ss_pred cccCCCcEEEEEECCEEEEEEEccCCCCCCchhHH--HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhh
Confidence 346788887 489999999998855567777 999999999888877667788999999999999998887542
Q ss_pred ----CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccc
Q 010464 80 ----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155 (510)
Q Consensus 80 ----~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~ 155 (510)
.++...+ +++|+.++. .| |+|+||.+||...+.||||+.+.+.+..+.|.||||||++..+.
T Consensus 165 ~~~~~~~~~~~-~~~~~~~~~-~~--l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~---------- 230 (255)
T TIGR00633 165 NKGNAGFTPEE-REWFDELLE-AG--LVDTFRHFNPDTEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLA---------- 230 (255)
T ss_pred cCCCCCcCHHH-HHHHHHHHH-cC--CEecchhhCCCCCCcCcCcCCccCccccCCceEEEEEEECHHHH----------
Confidence 2344433 788999885 56 99999999998766899999887777789999999999998764
Q ss_pred ccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 156 ~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
.++.++.|... ..+|||+||+++|+
T Consensus 231 ---~~~~~~~i~~~---------------------~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 231 ---ERVVDSYIDSE---------------------IRGSDHCPIVLELD 255 (255)
T ss_pred ---hhhcEeEECCC---------------------CCCCCcccEEEEEC
Confidence 36788888752 35799999999883
No 6
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.83 E-value=2.4e-20 Score=192.57 Aligned_cols=180 Identities=23% Similarity=0.263 Sum_probs=128.0
Q ss_pred ceEecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC
Q 010464 4 LKLIVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 78 (510)
Q Consensus 4 ~~~~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~ 78 (510)
+.++|.||+.+ .|+++|||||.+.++.. . .|++|+..|+.|++.++.+|+++|+ |+++..||.++.
T Consensus 6 ~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~---~--~~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~ 76 (335)
T KOG1294|consen 6 ALELDSEGRCVIVDKEMFVLINVYCPRNSPEIS---K--RRLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEA 76 (335)
T ss_pred hhhhhccCCeeeeecccccccceeccccCCcch---h--hhhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhh
Confidence 45789999988 79999999999987533 3 5789999999999999999999999 998888776654
Q ss_pred CCCCCch-HHHHHHHHHHH--HcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccc
Q 010464 79 GPDFAKN-EFRIWFRSMLV--ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155 (510)
Q Consensus 79 ~~~f~~~-e~R~wl~~lL~--~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~ 155 (510)
...|... ....++..++- +.+ ..+|..+..||+ .+.||+|.........+|+.+|||+.+.+-+++
T Consensus 77 ~~~~~~~~~~~~~l~d~~~~~~t~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~--------- 145 (335)
T KOG1294|consen 77 CEKFSGDPEISSELRDLQCLLETK-CTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH--------- 145 (335)
T ss_pred hhccccchhccccchhhhhhhhcc-ceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee---------
Confidence 3332211 11223333221 122 249999999999 588999999988899999999999999775432
Q ss_pred ccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEeccCCCCCCCCCccccccccc----chhhHHH
Q 010464 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI----IRGVQQT 231 (510)
Q Consensus 156 ~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~~~~~~~~p~L~~r~lpe----f~g~Q~~ 231 (510)
|.. +.++|||+||...+... .....|++.|+|. +...+-.
T Consensus 146 ---------------------------~~~----~~~~s~h~~~g~~i~~e-----~e~~~l~~~y~p~~~~~~~~~~~~ 189 (335)
T KOG1294|consen 146 ---------------------------YGF----GAMGSDHRPVGRVIIAE-----FEIFILINTYVPNIGGGLVNLVYR 189 (335)
T ss_pred ---------------------------ecc----cccCCccCccceEEEEe-----ecceeeccccCcccccccchhhhh
Confidence 111 12699999999876544 3455666666655 3444444
Q ss_pred HHHHHhhc
Q 010464 232 LVSVLMKR 239 (510)
Q Consensus 232 i~~ff~~~ 239 (510)
|..++.+.
T Consensus 190 ~~~~~~~~ 197 (335)
T KOG1294|consen 190 ILDRWDKE 197 (335)
T ss_pred hhhhhHHH
Confidence 44555554
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.70 E-value=7.7e-17 Score=166.64 Aligned_cols=158 Identities=23% Similarity=0.361 Sum_probs=124.0
Q ss_pred cCCCCEE-----eEEEEEEeecCCCCccchhhhhHHH--HHHHHHHHHHHHHHHh---cCCceEEeccccCCCCcccc--
Q 010464 8 VRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFN--LSFSSSMYYRWEFLLC---QGRRIFVVGDLNIAPAAIDR-- 75 (510)
Q Consensus 8 d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fK--l~F~~~L~~ri~~Ll~---~g~~VIv~GDfNia~~~iD~-- 75 (510)
+++|++| .|.|+|.|+|+.+.. ..+.. |+ .++-..++..+..+-. ....++++||+|++|..||-
T Consensus 156 ~~~g~~i~~e~e~~~l~~~y~p~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~ 232 (335)
T KOG1294|consen 156 RPVGRVIIAEFEIFILINTYVPNIGGG-LVNLV--YRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSK 232 (335)
T ss_pred CccceEEEEeecceeeccccCcccccc-cchhh--hhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccc
Confidence 5678887 699999999999874 45666 55 5555555555544311 12379999999999999994
Q ss_pred -C-C------CCCCCCchHHHHHH-HHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccc
Q 010464 76 -C-D------AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146 (510)
Q Consensus 76 -~-d------~~~~f~~~e~R~wl-~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~ 146 (510)
+ . ..++|.+.+ |.|+ ..++. . +.++|+||++||+....||+|.+..+.+..|.|.|+||++|+...+
T Consensus 233 ~~~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~-~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~- 308 (335)
T KOG1294|consen 233 PLVSPAGNTLSNAGFTPEE-RDSFFAELLE-K-GPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGP- 308 (335)
T ss_pred cccccccCCcCCCCCCHHH-hhhHHHhhcc-C-CcceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCC-
Confidence 2 1 135677766 9999 56653 3 4799999999999877899999999999999999999999999875
Q ss_pred cccccccccccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 147 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
..+.+++|... .+.|||||||++.|.
T Consensus 309 ------------n~~r~~~Ic~r--------------------~~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 309 ------------NNGRRFYICSR--------------------PIHGSDHCPITLEFF 334 (335)
T ss_pred ------------CCCceeeeecC--------------------ccCCCCCCCeeeeec
Confidence 47899999873 268999999999875
No 8
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.47 E-value=1.2e-13 Score=119.58 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=54.9
Q ss_pred EEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCch-HHHHHHHHH
Q 010464 16 IMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-EFRIWFRSM 94 (510)
Q Consensus 16 fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~-e~R~wl~~l 94 (510)
|.|+|||+|... ++. .|++.|...+..+. ..++||+||||+.+...+.. ... ...+.|..+
T Consensus 1 i~i~~vY~pp~~----~~~------~~~~~l~~~~~~~~--~~~~Ii~GDFN~~~~~w~~~------~~~~~~~~~l~~~ 62 (119)
T PF14529_consen 1 ITIISVYAPPSS----ERE------EFFDQLRQLLKNLP--PAPIIIGGDFNAHHPNWDSS------NTNSRRGEQLLDW 62 (119)
T ss_dssp EEEEEEE--TTS-----CH------HHHHHHHHHHHCCT--TSSEEEEEE-----GGGT-S------CHHHHHHHHHHHH
T ss_pred CEEEEEECCCCc----cHH------HHHHHHHHHHHhCC--CCCEEEEeECCCCchhhhhc------cccchhHHHHHHH
Confidence 689999999986 222 37788877766532 22999999999965544321 111 224456667
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcc
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~ 145 (510)
+.+.+ |+|+ ++.. ..|||++... ++|||+||++..++
T Consensus 63 ~~~~~--l~~~----~~~~-~~~T~~~~~~-------~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 63 LDSHN--LVDL----NPPG-RPPTFISNSH-------GSRIDLILTSDNLL 99 (119)
T ss_dssp HHHCT--EEE-------TT----SEEECCC-------EE--EEEEEECCGC
T ss_pred hhhce--eeee----ecCC-CCCcccCCCC-------CceEEEEEECChHH
Confidence 76776 8887 3322 3499988654 59999999999875
No 9
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.35 E-value=8e-13 Score=99.06 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=40.4
Q ss_pred CcCCCCCCCcceeeeccCCCCCCccceecCCCCCCCCCCCCCCCceeecCCC
Q 010464 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 506 (510)
Q Consensus 455 P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~~~~ 506 (510)
|.|. ||++|++++++|.|+|.||.||.|++..+ .+|+||+|+|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 58999999999999999999999998543 689999999973
No 10
>PRK05421 hypothetical protein; Provisional
Probab=98.98 E-value=4.1e-09 Score=105.72 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=68.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|.|+|+|.++-+....+| .+-++.|...+.. ...+|||+||||..... ...+++.+
T Consensus 149 ~l~v~ntHl~~~~~~~~~r------~~q~~~l~~~~~~---~~~p~Il~GDFN~~~~~--------------~~~~l~~~ 205 (263)
T PRK05421 149 TLLVVNIHAINFSLGVDVY------SKQLEPIGDQIAH---HSGPVILAGDFNTWSRK--------------RMNALKRF 205 (263)
T ss_pred EEEEEEECccccCcChHHH------HHHHHHHHHHHHh---CCCCEEEEcccccCccc--------------chHHHHHH
Confidence 5889999997654321222 2233444444433 35689999999973221 02356666
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
+...| +.|++ .|.... + ..++.||||||++ ++ .+.++.++.
T Consensus 206 ~~~~~--l~~~~---~~~~~~-~-----------~~~~~~ID~I~~~-~~---------------~v~~~~v~~------ 246 (263)
T PRK05421 206 ARELG--LKEVR---FTDDQR-R-----------RAFGRPLDFVFYR-GL---------------NVSKASVLV------ 246 (263)
T ss_pred HHHcC--CCccC---cCCccc-c-----------cccCCCcceEEEC-Cc---------------EEEEEEcCC------
Confidence 65555 65542 111100 1 1125799999985 33 567777753
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
..+|||.||+++|.+.
T Consensus 247 ----------------~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 247 ----------------TRASDHNPLLVEFSLK 262 (263)
T ss_pred ----------------CCCCCccCEEEEEEec
Confidence 3699999999999753
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=98.87 E-value=1e-08 Score=103.05 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=75.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|.|+|++.- -.. .+|. +-.+.|.+. ..+ ....++|++||||..++.-++.-. .+..
T Consensus 133 ~l~V~~~HL~-l~~--~~R~------~Q~~~L~~~-~~l-~~~~p~vl~GDFN~~p~s~~yr~~------------~~~~ 189 (259)
T COG3568 133 PLRVINAHLG-LSE--ESRL------RQAAALLAL-AGL-PALNPTVLMGDFNNEPGSAEYRLA------------ARSP 189 (259)
T ss_pred EEEEEEEecc-ccH--HHHH------HHHHHHHhh-ccC-cccCceEEEccCCCCCCCccceec------------cCCc
Confidence 7889999986 322 2333 244444331 122 344599999999998887554221 1111
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
+. .+..+.+++.-.++-+.+.|. +... -.||||||+++.+ .+..+.+..+.-
T Consensus 190 ~~-~~~~~~~~~~~a~~~~~~tfp--s~~p-------~lriD~Ifvs~~~---------------~i~~~~v~~~~~--- 241 (259)
T COG3568 190 LN-AQAALTGAFAPAVGRTIRTFP--SNTP-------LLRLDRIFVSKEL---------------AIRSVHVLTDRL--- 241 (259)
T ss_pred hh-hccccccccCcccCcccCCCC--CCCc-------cccccEEEecCcc---------------cEEEEEeecCCC---
Confidence 21 112366777666663322232 2111 1499999999976 567777776521
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
....|||.||.++|.+.
T Consensus 242 ---------------a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 242 ---------------ARVASDHLPLLAELRLK 258 (259)
T ss_pred ---------------ccccccccceEEEEecC
Confidence 14789999999999764
No 12
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.86 E-value=2.9e-09 Score=99.76 Aligned_cols=105 Identities=26% Similarity=0.281 Sum_probs=54.0
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCC--ceEEeccccCCCCccccCCCCCCCCchHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGR--RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 92 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~--~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~ 92 (510)
.|+|+|+|.|.... .| ......|...+..+..... ++|||||||..+...+ ...+.+..
T Consensus 121 ~i~v~~~H~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~----------~~~~~~~~ 181 (249)
T PF03372_consen 121 PITVVNVHLPSSND---ER------QEQWRELLARIQKIYADNPNEPVIVMGDFNSRPDSRD----------SGFRESIR 181 (249)
T ss_dssp EEEEEEEETTSHHH---HH------HHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSSGG----------THHHHHHH
T ss_pred EEEeeeccccccch---hh------hhhhhhhhhhhhhcccccccceEEEEeecccCCccch----------hhhhhccc
Confidence 57799999887432 22 2233355555555544443 5999999999887644 11133333
Q ss_pred HHHHHcCCcccccccccCCCC---CCCcccCCCCCCCcccCCcCceEEEEEcCCc
Q 010464 93 SMLVESGGSFFDVFRSKHPER---REAYTCWPSNTGAEQFNYGTRIDHILCAGPC 144 (510)
Q Consensus 93 ~lL~~~G~~lvDv~R~~hP~~---~~~YTcws~~~~ar~~N~GsRIDyILvS~~l 144 (510)
.++...+ +.+.++..++.. ...++++.... .+...||||||++..+
T Consensus 182 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iD~i~~s~~~ 230 (249)
T PF03372_consen 182 DFLPEYG--FKDGFRDLHPNCVLPTSPGTTPTYSK----NGEPSRIDYIFVSSDL 230 (249)
T ss_dssp HSHHHHH--HHTHHHHHHTTHEEECCSTSBETTTT----CTEEB--EEEEEEEHE
T ss_pred cccccch--hhhhhhhccccccccCCCCCccCCCC----CCCCccEEEEEEECcc
Confidence 3332222 666666655432 11122222221 1334699999997654
No 13
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=98.73 E-value=5.5e-08 Score=100.87 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=90.7
Q ss_pred ceEecCCCCEEeEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCC
Q 010464 4 LKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 83 (510)
Q Consensus 4 ~~~~d~eGr~~~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~ 83 (510)
|..+...||.+.+..--+++|-+...+ +=+. .|..-.=.|...++.-.+.+.-||++||||+-|..+-|+
T Consensus 120 l~~l~~~g~~v~~yntHLHAeY~rq~D-~YL~--HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~------- 189 (422)
T KOG3873|consen 120 LTVLLVGGRMVNLYNTHLHAEYDRQND-EYLC--HRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHK------- 189 (422)
T ss_pred EEEEeeCCEEeeeeehhccccccccCc-hhhh--HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccccee-------
Confidence 445556666655555555666665432 2222 333233344555666556778899999999987765332
Q ss_pred chHHHHHHHHHHHHcCCcccccccccCCCC---------------CCCcccCC------CCCCCcccCCcCceEEEEEcC
Q 010464 84 KNEFRIWFRSMLVESGGSFFDVFRSKHPER---------------REAYTCWP------SNTGAEQFNYGTRIDHILCAG 142 (510)
Q Consensus 84 ~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~---------------~~~YTcws------~~~~ar~~N~GsRIDyILvS~ 142 (510)
+|.+.| |+|+|+.+|++. +|. ||-+ ....-...-.|.||||||+.+
T Consensus 190 ----------ll~~a~--l~daw~~~h~~q~e~~~~r~s~~~~l~~g~-tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~ 256 (422)
T KOG3873|consen 190 ----------LLLSAG--LVDAWTSLHLDQCESDSFRLSEDKELVEGN-TCDSPLNCYTSAQKREDDPLGKRIDYVLVKP 256 (422)
T ss_pred ----------eeeccc--hhhhHhhhchhhhcCcccccchhhhhhcCC-cccCcchhhhHHHhCCCCccceeeeEEEEcC
Confidence 232445 889999888864 122 4432 111111223599999999998
Q ss_pred CccccccccccccccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464 143 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 143 ~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
+- |.++.+++.... ..+| -.+.-.|||..+.++|.+..
T Consensus 257 ~~--------------~~~~~a~~~~t~-----~rvP--------~~d~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 257 GD--------------CNAKIAEVEFTE-----PRVP--------GEDCSYSDHEALMATLKIFK 294 (422)
T ss_pred cc--------------eEEEeeeEEecC-----CCCC--------CCCCCccchhhheeEEEeec
Confidence 74 244444443221 0123 13556899999999998875
No 14
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.53 E-value=9.4e-07 Score=90.12 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=58.6
Q ss_pred eEEEEEEeecCCCCccc--hhhhhHHHHHHHHHHHHHHHHH-HhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHH
Q 010464 15 QIMVILFYSMCTGLELI--VRIQLEFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWF 91 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~--eR~~~~fKl~F~~~L~~ri~~L-l~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl 91 (510)
.|.|+|++.-....... .... .|++-++.|.+.+... +..+.+|||+||||+.+.. .+ +
T Consensus 134 ~~~v~~THL~~~~~~~~~~~~~~--~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s------------~~----~ 195 (283)
T TIGR03395 134 KFHVIGTHLQAQDSMCSKLGPAS--IRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGS------------NE----Y 195 (283)
T ss_pred EEEEEEeCCCCCcccccccccHH--HHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCC------------HH----H
Confidence 68999999976532100 0012 4555677777766542 2346689999999996642 12 3
Q ss_pred HHHHHHcCCcccccccccCCCCCCCcccCCCCCCCc-----ccCCcCceEEEEEcCCc
Q 010464 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE-----QFNYGTRIDHILCAGPC 144 (510)
Q Consensus 92 ~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar-----~~N~GsRIDyILvS~~l 144 (510)
..|+..++ ..|.. +.. -.||| ....|.. ......||||||++..-
T Consensus 196 ~~ml~~l~--~~~p~---~~g--~~~T~-d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 196 HDMFKTLN--VSEPR---YVG--VPATW-DATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred HHHHHHhc--ccCCC---cCC--CCCCc-CCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 34454443 33321 111 24776 4333322 22345799999999764
No 15
>PTZ00297 pantothenate kinase; Provisional
Probab=98.52 E-value=1e-06 Score=106.59 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=80.1
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHH---------hcCCceEEeccccCCCCccccCCCCCCCCch
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLL---------CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN 85 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll---------~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~ 85 (510)
.+.++|++.-..... ..|.+ -++.|.+.++..+ ..+.+|||+||||+- .+|..+.... ..
T Consensus 151 ~v~v~~tHL~~~~~~-~~R~~------Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~--~~~~~~~~~~--s~ 219 (1452)
T PTZ00297 151 RIVFFNVHLRQEDSL-PSTSS------QVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN--GIDPHNGGHP--TK 219 (1452)
T ss_pred eEEEEEeCCCCCCCc-chHHH------HHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc--cccccccCCc--cH
Confidence 688899988655332 23433 3344444444311 245689999999983 2332211000 11
Q ss_pred HHHHHHHHHHHHcCCccccccccc---CCCCCCCcccCCCCC-CCcccCCcCceEEEEEcCCccccccccccccccccce
Q 010464 86 EFRIWFRSMLVESGGSFFDVFRSK---HPERREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 161 (510)
Q Consensus 86 e~R~wl~~lL~~~G~~lvDv~R~~---hP~~~~~YTcws~~~-~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v 161 (510)
+....++.+. ..+..+.|+|+.. ||......+||+... -.+......||||||+++.+ .|
T Consensus 220 e~~~ml~~l~-~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v---------------~v 283 (1452)
T PTZ00297 220 RFQELLNELQ-DLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV---------------QV 283 (1452)
T ss_pred HHHHHHHHhh-hccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc---------------eE
Confidence 3233344332 2233356655443 333223456666331 11212234699999998765 56
Q ss_pred eeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 162 NECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 162 ~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
.++.|..... . .. ....+.|||+||+++|.+.
T Consensus 284 ~~~~v~~~~~-~--~~----------~~~~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 284 EKPRIEKFVV-S--SR----------RPYTYLSDHFGVSARLTLP 315 (1452)
T ss_pred EEEEEecccc-c--CC----------CCCCCcCcCccEEEEEEeC
Confidence 7777753200 0 00 1135799999999999863
No 16
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=9.1e-07 Score=90.87 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=70.6
Q ss_pred ceEecCCCCEEeEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCC
Q 010464 4 LKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 83 (510)
Q Consensus 4 ~~~~d~eGr~~~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~ 83 (510)
..+.+.+|+ .++|+|++.-+..- .... || .-+..|...+.. -..+||+.||||..|-.
T Consensus 180 t~~~~~~g~--~l~v~~lh~~~~~~---~~~~--~~-~ql~~l~~~i~~---~~gpvIlaGDfNa~pWS----------- 237 (309)
T COG3021 180 TAYPLPDGT--ELTVVALHAVNFPV---GTDP--QR-AQLLELGDQIAG---HSGPVILAGDFNAPPWS----------- 237 (309)
T ss_pred EEEEcCCCC--EEEEEeeccccccC---CccH--HH-HHHHHHHHHHHc---CCCCeEEeecCCCcchh-----------
Confidence 345667776 45666766654321 1123 54 445555555554 35899999999996542
Q ss_pred chHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceee
Q 010464 84 KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE 163 (510)
Q Consensus 84 ~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~ 163 (510)
..-+.++.+ | ..|.+...- .+.|-+|+.. +..-.|.+|||||..+ + .+.+
T Consensus 238 --~~~~R~~~l----~--~~~~~~~aG---~~~~~~~p~~---~~r~~g~PIDhvf~rg-l---------------~~~k 287 (309)
T COG3021 238 --RTAKRMAAL----G--GLRAAPRAG---LWEVRFTPDE---RRRAFGLPIDHVFYRG-L---------------TVMK 287 (309)
T ss_pred --HHHHHHHHh----c--ccccchhcc---CCccccCHHH---HhhccCCCcceeeecC-c---------------chhh
Confidence 001223332 1 122221111 1234333322 1113578999999987 3 3334
Q ss_pred EEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 164 CDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 164 ~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
+..+. ..||||.||+++|...
T Consensus 288 a~rl~----------------------~~gSDH~PLLveF~~~ 308 (309)
T COG3021 288 ARRLP----------------------DRGSDHRPLLVEFSYG 308 (309)
T ss_pred hhhcc----------------------ccCCCCCceEEEEEec
Confidence 43333 3799999999999753
No 17
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.09 E-value=1.8e-05 Score=88.39 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=36.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh-cCCceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC-QGRRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~-~g~~VIv~GDfNia~~~ 72 (510)
.|+|+|++. .-++ ++-. -|+.-...|...++.+.. .+.+||||||||..|+.
T Consensus 418 ~l~VaNTHL-~~~p---~~~d--vRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 418 LLCVANTHI-HANQ---ELKD--VKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred EEEEEEeee-ccCC---ccch--hHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 588999998 4333 2223 555566677777776643 46799999999998864
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=97.81 E-value=9.7e-05 Score=75.17 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=34.1
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHH-HHHhcCCceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWE-FLLCQGRRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~-~Ll~~g~~VIv~GDfNia~~~ 72 (510)
.++++|+|+...+. .+|.+ -.+.+.+.+. .. ...++||+||||-.|+.
T Consensus 151 ~~~ffstH~~a~~~--~da~a------iV~~I~~~f~~~~--~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 151 NDVFFSIHALANGG--TDAGA------IVRAVHNFFRPNM--RHINWMIAGDFNRSPDR 199 (271)
T ss_pred CeEEEEeeecCCCC--ccHHH------HHHHHHHHHhhcc--CCCCEEEeccCCCCCcc
Confidence 47999999999853 24544 5666666665 32 23689999999987775
No 19
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.31 E-value=9.5e-05 Score=81.71 Aligned_cols=42 Identities=29% Similarity=0.691 Sum_probs=34.8
Q ss_pred CCCcCCCCCCCcceeeeccCCCCCCccceecCCCCCCCCCCCCCCCceeec
Q 010464 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 503 (510)
Q Consensus 453 ~~P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~ 503 (510)
.-..|.| +..++.++|.|.|+|.||.||.|..+ +.|+||.|+
T Consensus 717 ~~~~c~c-~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 717 EEVTCGC-GTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred cccccCC-cchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 3467887 67788888899999999999999742 459999996
No 20
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=97.25 E-value=0.00049 Score=69.74 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=66.0
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.++|.|.+.-...+..|+|.. .|+ .-++..++-|+.| .+..||.+||+|-.....-+|.. |
T Consensus 205 Kl~l~tsHLEStr~h~P~r~~-qF~-~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev~r~~l-------P-------- 265 (349)
T KOG2756|consen 205 KLCLMTSHLESTRGHAPERMN-QFK-MVLKKMQEAIESL--PNATVIFGGDTNLRDREVTRCGL-------P-------- 265 (349)
T ss_pred eEEEEeccccCCCCCChHHHH-HHH-HHHHHHHHHHHhC--CCceEEEcCcccchhhhcccCCC-------C--------
Confidence 588889888766666788876 255 3455666666665 78899999999985332211110 1
Q ss_pred HHHcCCcccccccccC-CCCCCCcccCCCCCCCcccC--CcCceEEEEE
Q 010464 95 LVESGGSFFDVFRSKH-PERREAYTCWPSNTGAEQFN--YGTRIDHILC 140 (510)
Q Consensus 95 L~~~G~~lvDv~R~~h-P~~~~~YTcws~~~~ar~~N--~GsRIDyILv 140 (510)
.+++|+|-.+- |.. -.|||=......-..+ ...|+|.||+
T Consensus 266 -----D~~vDvWE~lg~p~~-~~FTwDT~~N~nl~G~~a~k~RfDRi~~ 308 (349)
T KOG2756|consen 266 -----DNIVDVWEFLGKPKH-CQFTWDTQMNSNLGGTAACKLRFDRIFF 308 (349)
T ss_pred -----chHHHHHHHhCCCCc-CceeeecccCcccchhHHHHHHHHHHhh
Confidence 13889998887 654 4599744443322333 2479999999
No 21
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00031 Score=70.40 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=40.7
Q ss_pred CCCCcCCCCCCCcceeeeccCCCCCCccceecCCCCCCCCCCCCCCCceeecCCCC
Q 010464 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 507 (510)
Q Consensus 452 ~~~P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~W~~~~~ 507 (510)
.++|+|. || ||++.+ |+.|+.--|+||+|+.-+ +..+-|+||+|.++..
T Consensus 11 ~~~P~C~-HG-P~LLF~-K~~~~E~~~~F~ACs~~R----~d~kfC~F~~~~d~~~ 59 (325)
T KOG4399|consen 11 VPAPLCP-HG-PTLLFV-KVTQKEETRRFYACSACR----MDDKFCHFFMFEDEFF 59 (325)
T ss_pred CCCCcCC-CC-CeEEEE-EccCcchheeeehhhhhh----cchhccchhhhccccc
Confidence 5789999 75 998776 788999999999999765 3457899999998754
No 22
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=96.68 E-value=0.02 Score=62.44 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=35.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhc---CCceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQ---GRRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~---g~~VIv~GDfNia~~~ 72 (510)
.+.|.|++.=.......+ |++-...|.+.+++..+. +.++|+|||||+.++.
T Consensus 253 ~ilVanTHLl~np~~~~v------rL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 253 GILVANTHLLFNPSRSDV------RLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred ceEEEeeeeeecCcccch------hhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 677788777655333334 444666677777776543 4599999999998863
No 23
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=96.47 E-value=0.0062 Score=62.41 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=28.8
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPA 71 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~ 71 (510)
.|+|||+|.-.... ..+.+ ..++.+....... ...+|||+||||+...
T Consensus 143 ~F~li~~H~~p~~~--~~e~~-----aL~~v~~~~~~~~--~~~~villGDFNa~~~ 190 (276)
T smart00476 143 EFVIVPLHTTPEAA--VAEID-----ALYDVYLDVRQKW--GTEDVIFMGDFNAGCS 190 (276)
T ss_pred cEEEEEecCChHHH--HHHHH-----HHHHHHHHHHHhh--ccCCEEEEccCCCCCC
Confidence 79999999865432 11111 1233333333332 4689999999999543
No 24
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=95.54 E-value=0.018 Score=65.47 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHH--hcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 010464 38 FNLSFSSSMYYRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 115 (510)
Q Consensus 38 fKl~F~~~L~~ri~~Ll--~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~ 115 (510)
+|.+-..+|...++.+. ....+++|+||||..... .+ ++ .|.+.| +...--.+|+.. .
T Consensus 653 ~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e------------dp----I~-~l~~aG--y~~l~~~~~~~~-~ 712 (798)
T COG2374 653 TRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE------------DP----IQ-ALEGAG--YMNLAARFHDAG-D 712 (798)
T ss_pred HHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc------------cH----HH-HHhhcC--chhhhhhccCCC-C
Confidence 55666777777766532 245789999999985332 12 22 243344 556555566544 3
Q ss_pred CcccCCCCCCCcccCCcCceEEEEEcCCccc
Q 010464 116 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 146 (510)
Q Consensus 116 ~YTcws~~~~ar~~N~GsRIDyILvS~~l~~ 146 (510)
.|+|.-. .+. --|||||++..+.+
T Consensus 713 ~YSY~f~------G~~-gtLDhaLas~sl~~ 736 (798)
T COG2374 713 RYSYVFN------GQS-GTLDHALASASLAA 736 (798)
T ss_pred ceEEEEC------Ccc-chHhhhhhhhhhhh
Confidence 4765321 112 24999999999876
No 25
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=95.08 E-value=0.11 Score=53.85 Aligned_cols=51 Identities=16% Similarity=0.080 Sum_probs=31.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHH----H--HhcCCceEEeccccCCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEF----L--LCQGRRIFVVGDLNIAPA 71 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~----L--l~~g~~VIv~GDfNia~~ 71 (510)
.|.++|.|.+++...-.+|.+ =|..+...+.- . +....+||++||||---+
T Consensus 139 ~~~fv~~HL~a~~~~~~~R~~------~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 139 SFCFVNSHLAAGASNVEQRNQ------DYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EEEEEeeccccccchhhhhHH------HHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 599999999997653233433 44444333210 0 123578999999998433
No 26
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=91.55 E-value=1 Score=47.84 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=56.8
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh----------cCC-ceEEeccccCCCCccccCCCCCCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC----------QGR-RIFVVGDLNIAPAAIDRCDAGPDFA 83 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~----------~g~-~VIv~GDfNia~~~iD~~d~~~~f~ 83 (510)
.+.+.|++.|=.-....-.+- -.+--|+.+..++.+..+ .++ .+.++||||..+...+.- +.
T Consensus 191 ~~~va~Th~~w~~~~~dvk~i--q~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~-----~l 263 (378)
T COG5239 191 TPYVANTHLPWDPKYRDVKLI--QCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYK-----FL 263 (378)
T ss_pred ceeEEeccccccCCCCchhee--hhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceehh-----hh
Confidence 577888888755321111111 233345555555555432 122 679999999987754321 11
Q ss_pred chHHHHHHHH--------HHHHcCCcccccccc--cCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCC
Q 010464 84 KNEFRIWFRS--------MLVESGGSFFDVFRS--KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 143 (510)
Q Consensus 84 ~~e~R~wl~~--------lL~~~G~~lvDv~R~--~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~ 143 (510)
... +..+.. ++ ..|.+++|-.-. .++...-.||+|... +.-=|||||..++
T Consensus 264 ~~~-~~q~H~~~~~~~~~ly-svg~~~~h~~n~~~~~~~~~~~fTN~t~~-------~kG~iDYIfy~~~ 324 (378)
T COG5239 264 VTS-QIQLHESLNGRDFSLY-SVGYKFVHPENLKSDNSKGELGFTNWTPG-------FKGVIDYIFYHGG 324 (378)
T ss_pred hhH-HHHhhhcccccchhhh-cccccccChhhcccCCCcCCccccccccc-------ccceeEEEEEecC
Confidence 000 111111 11 112234444433 233323358888754 2346999999987
No 27
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.42 E-value=0.78 Score=53.79 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=27.6
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHH----HHHhcCCceEEeccccC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWE----FLLCQGRRIFVVGDLNI 68 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~----~Ll~~g~~VIv~GDfNi 68 (510)
.|-+|+-|.-++-..-.||.. =|..+...+. ..+....-||||||||-
T Consensus 674 sfCFv~SHlAAG~snv~ERn~------DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNY 725 (1080)
T KOG0566|consen 674 SFCFVCSHLAAGQSNVEERNE------DYKTIARKLRFPRGRMIFSHDYIFWLGDFNY 725 (1080)
T ss_pred cEEEEecccccccchHhhhhh------hHHHHHHhccccCCccccCCceEEEecccce
Confidence 466777777655544445544 3344433332 11234557899999997
No 28
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=90.07 E-value=0.59 Score=49.88 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCCCCccceEEEEeccC
Q 010464 190 RLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 190 ~~~gSDH~PV~~~L~~~~ 207 (510)
....|||.|++++|...+
T Consensus 336 ~~~pSDHi~L~~ef~~~~ 353 (361)
T KOG0620|consen 336 PHHPSDHIPLLAEFEIAP 353 (361)
T ss_pred CCCCCccchhhccccccC
Confidence 467899999999998765
No 29
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=89.28 E-value=1.7 Score=49.18 Aligned_cols=18 Identities=28% Similarity=0.192 Sum_probs=15.2
Q ss_pred CCCCCCccceEEEEeccC
Q 010464 190 RLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 190 ~~~gSDH~PV~~~L~~~~ 207 (510)
++..|||-||++.|....
T Consensus 576 ei~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 576 EIRLSDHRPVSSMFLVEV 593 (621)
T ss_pred CcccCCchhcceEEEEEE
Confidence 468899999999997654
No 30
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=85.95 E-value=1.3 Score=48.14 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=14.0
Q ss_pred CCCCCccceEEEEecc
Q 010464 191 LEGSDHAPVYMCLGEV 206 (510)
Q Consensus 191 ~~gSDH~PV~~~L~~~ 206 (510)
++.|||-||++++...
T Consensus 312 l~~SDHrPV~a~~~~~ 327 (460)
T COG5411 312 LMISDHRPVYATFRAK 327 (460)
T ss_pred eeecCCCeEEEEEecc
Confidence 6899999999999754
No 31
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=70.16 E-value=8.3 Score=40.41 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=40.5
Q ss_pred eEEEEEEeecCCCCccchh------hhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCC
Q 010464 15 QIMVILFYSMCTGLELIVR------IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPA 71 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR------~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~ 71 (510)
.|-|+|++.=+....-.++ +. .+|.+=|.....++..+.....++|+.||||.-.+
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS-~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYT-GQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhH-HHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 5889999988776543344 22 26666777777777777677889999999998554
No 32
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=58.07 E-value=4.4 Score=33.54 Aligned_cols=36 Identities=33% Similarity=0.891 Sum_probs=16.5
Q ss_pred CCCCcCCCCCCCcceeeeccCCCCCCccceecCCCCCCCCCCCCCCCcee
Q 010464 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501 (510)
Q Consensus 452 ~~~P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~ 501 (510)
..+|+|.- ||.|.+| .|+-.||. |.=|+| ..||||+
T Consensus 34 g~vP~Cd~-GE~CAvr----kG~RIGkl---CdC~rG------~~CN~fl 69 (73)
T PF06373_consen 34 GQVPSCDV-GEQCAVR----KGPRIGKL---CDCPRG------TSCNFFL 69 (73)
T ss_dssp ----B--S-SS-SEEE-----SSSEEE-----B--TT--------B-TTT
T ss_pred CcCCCCCC-Cchhhhc----cccccccc---cCCCCC------CchhhhH
Confidence 35899995 9999764 48888884 544445 6899996
No 33
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=56.74 E-value=3.9 Score=43.47 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 010464 342 SQLGQLSLKSFFHKR 356 (510)
Q Consensus 342 ~~~~Q~sL~sFF~~~ 356 (510)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 456899999999863
No 34
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=51.12 E-value=38 Score=31.79 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=28.6
Q ss_pred ccceEecCCCCEEeEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccC
Q 010464 2 SFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI 68 (510)
Q Consensus 2 ~~~~~~d~eGr~~~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNi 68 (510)
.|.+++|.+|+++++.-+ .| +..+. . .|.++.+.|...+... .-+||++|-+|.
T Consensus 21 ~~~v~ld~~G~v~d~~~~-~~-~~~~~------~--~~~~~~~~l~~~i~~~---kP~vI~v~g~~~ 74 (150)
T PF14639_consen 21 VFCVVLDENGEVLDHLKL-VY-NERDR------E--RKEEDMERLKKFIEKH---KPDVIAVGGNSR 74 (150)
T ss_dssp EEEEEE-TTS-EEEEEEE--S--TT-S------S---SHHHHHHHHHHHHHH-----SEEEE--SST
T ss_pred EEEEEECCCCcEEEEEEE-cC-Cccch------H--HHHHHHHHHHHHHHHc---CCeEEEEcCCCh
Confidence 478899999999976555 22 22211 1 3445666666666543 457888876665
No 35
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=46.02 E-value=23 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=14.9
Q ss_pred cceecCCCCCCCCCCCCCCCceeecCC
Q 010464 479 RFFVCARAEGPASNPEANCGYFKWAFS 505 (510)
Q Consensus 479 ~Fy~C~~p~g~~~~~~~~C~fF~W~~~ 505 (510)
.||.|++ --.|.|..|..+
T Consensus 20 ~F~~Cs~--------yP~C~~~~~~~~ 38 (39)
T PF01396_consen 20 KFLGCSN--------YPECKYTEPLPK 38 (39)
T ss_pred CEEECCC--------CCCcCCeEeCCC
Confidence 9999986 126999999764
No 36
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=30.84 E-value=61 Score=28.63 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=31.2
Q ss_pred CCCCcCCCCCCCcceeeeccCCCCCCccceecCC--CCCCCCCCCCCCCceeec
Q 010464 452 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR--AEGPASNPEANCGYFKWA 503 (510)
Q Consensus 452 ~~~P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~--p~g~~~~~~~~C~fF~W~ 503 (510)
..+.-|.| + ..|.-.+...--..|..||.|+- ..| +..+|+|=.|-
T Consensus 18 gv~ie~dc-n-akvvvats~dpvts~klyfscpyeisdg----~g~~~gfkrww 65 (122)
T PF05325_consen 18 GVPIECDC-N-AKVVVATSRDPVTSGKLYFSCPYEISDG----PGRGCGFKRWW 65 (122)
T ss_pred CcceeccC-C-ceEEEEeccCCcccceeeecCccccccC----CCCCccceeEE
Confidence 34566888 3 33333444567788999999986 334 34689999984
No 37
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=25.43 E-value=1.2e+02 Score=24.78 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeccccC
Q 010464 38 FNLSFSSSMYYRWEFLLCQGRRIFVVGDLNI 68 (510)
Q Consensus 38 fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNi 68 (510)
.+..|+..+...+-.....+..+|++|||+-
T Consensus 4 ~~~d~~hk~a~~iv~~~~~~~~~Ivie~L~~ 34 (82)
T TIGR01766 4 KVEDFLHKIVKQIVEYAKENNGTIVLEDLKN 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccc
Confidence 4556777777766554333558999999994
No 38
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.86 E-value=1.8e+02 Score=27.06 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 010464 39 NLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 112 (510)
Q Consensus 39 Kl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~ 112 (510)
.-.|.+.|...++.+.+.+.+||++|..-.....+ . . ...+...+++.+..+.+..|+|+|..+-..
T Consensus 90 ~~~~~~~l~~lv~~~~~~~~~vili~~pp~~~~~~---~--~--~~~~~~~~~~~~a~~~~~~~id~~~~~~~~ 156 (200)
T cd01829 90 EEEYRQRIDELLNVARAKGVPVIWVGLPAMRSPKL---S--A--DMVYLNSLYREEVAKAGGEFVDVWDGFVDE 156 (200)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCChhH---h--H--HHHHHHHHHHHHHHHcCCEEEEhhHhhcCC
Confidence 34455556665666556788999998743211100 0 0 001223455555555667899998777443
No 39
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=23.48 E-value=1e+02 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred EeEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCC
Q 010464 14 LQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD 77 (510)
Q Consensus 14 ~~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d 77 (510)
..|.++||.++++..-..+ .| +..+...| ++.||+||-|+.+|-..
T Consensus 187 ~~vIil~V~a~~~~~f~G~------------~L---lqsi~q~G---f~FG~mnIfHRHl~~sg 232 (324)
T COG3115 187 DTVIILNVAAHHESEFNGE------------KL---LQSIQQSG---FIFGDMNIFHRHLSLSG 232 (324)
T ss_pred ceEEEEEEeccCCCccchH------------HH---HHHHHHhC---cccccchhheecccccC
Confidence 3789999999988753222 22 22222345 78999999999776543
No 40
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=22.87 E-value=1.9e+02 Score=24.48 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=22.0
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEF 52 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~ 52 (510)
.+++|.|-+=.+... + -|.+||+.|.++++.
T Consensus 28 ~~v~I~It~~~gRs~-----e--~K~~ly~~l~~~L~~ 58 (82)
T PF14552_consen 28 DFVIIQITSGAGRST-----E--QKKALYRALAERLAE 58 (82)
T ss_dssp T-EEEEEEECS---H-----H--HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCH-----H--HHHHHHHHHHHHHHH
Confidence 688898888555431 3 899999999999876
Done!