Query 010464
Match_columns 510
No_of_seqs 326 out of 1657
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 2.7E-29 9.1E-34 243.7 17.2 159 7-207 91-259 (265)
2 2j63_A AP-endonuclease; base e 100.0 9.6E-28 3.3E-32 256.6 18.0 159 7-205 266-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 5.3E-25 1.8E-29 210.5 13.6 158 10-204 88-256 (257)
4 1hd7_A DNA-(apurinic or apyrim 99.9 3.3E-24 1.1E-28 215.0 14.4 156 7-204 151-317 (318)
5 2jc5_A Exodeoxyribonuclease; h 99.9 3.6E-24 1.2E-28 204.1 13.3 158 8-206 90-257 (259)
6 2jc4_A Exodeoxyribonuclease II 99.9 4.3E-24 1.5E-28 203.3 13.5 160 8-204 86-255 (256)
7 2o3h_A DNA-(apurinic or apyrim 99.9 7.9E-24 2.7E-28 206.5 15.4 156 7-204 118-284 (285)
8 1ako_A Exonuclease III; AP-end 99.9 1.9E-23 6.7E-28 200.1 13.1 154 15-204 102-267 (268)
9 1vyb_A ORF2 contains A reverse 99.8 7.1E-21 2.4E-25 178.7 12.1 139 7-204 91-238 (238)
10 2ei9_A Non-LTR retrotransposon 99.8 6.3E-20 2.2E-24 178.9 9.1 135 8-207 77-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.7 7E-17 2.4E-21 154.8 14.0 128 15-205 116-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.6 3.4E-15 1.2E-19 154.0 12.9 133 15-204 225-361 (362)
13 3teb_A Endonuclease/exonucleas 99.6 1.6E-15 5.4E-20 144.8 9.4 131 15-205 136-266 (266)
14 4fva_A 5'-tyrosyl-DNA phosphod 99.6 8E-15 2.7E-19 138.0 13.1 133 15-204 119-255 (256)
15 3g6s_A Putative endonuclease/e 99.5 2.4E-14 8.3E-19 138.0 11.4 132 15-207 131-262 (267)
16 4gz1_A Tyrosyl-DNA phosphodies 99.5 1.4E-14 5E-19 135.9 8.1 139 15-206 115-255 (256)
17 3l1w_A Uncharacterized protein 99.5 6.3E-14 2.2E-18 134.1 11.5 129 15-207 125-253 (257)
18 4f1h_A Tyrosyl-DNA phosphodies 99.5 4.9E-14 1.7E-18 129.8 9.3 139 15-204 109-249 (250)
19 1zwx_A SMCL, sphingomyelinase- 99.4 8.6E-13 2.9E-17 129.1 12.6 105 15-145 144-257 (301)
20 3mpr_A Putative endonuclease/e 99.4 7.7E-13 2.6E-17 130.8 12.3 147 15-207 135-291 (298)
21 2ddr_A Sphingomyelin phosphodi 99.3 7.3E-12 2.5E-16 122.5 12.8 112 15-145 144-262 (306)
22 3i41_A Beta-hemolysin; beta to 99.2 9E-11 3.1E-15 117.8 13.4 106 15-145 163-275 (317)
23 4b8c_D Glucose-repressible alc 98.6 5.4E-09 1.8E-13 116.7 2.1 52 15-72 548-610 (727)
24 3ngq_A CCR4-NOT transcription 98.3 4.7E-06 1.6E-10 87.4 12.5 52 15-72 196-260 (398)
25 2a40_B Deoxyribonuclease-1; WA 98.3 8.8E-07 3E-11 85.5 6.1 46 15-71 127-174 (260)
26 2imq_X Salivary nitrophorin; f 98.2 1.2E-06 4.1E-11 87.2 7.0 49 15-70 128-176 (282)
27 1i9z_A Synaptojanin, phosphati 97.9 8.2E-05 2.8E-09 76.7 12.0 48 15-68 159-210 (347)
28 1sr4_B CDT B, cytolethal diste 97.7 0.00018 6E-09 71.6 10.9 47 15-69 131-181 (261)
29 2f1n_A CDT B, cytolethal diste 97.7 6.8E-05 2.3E-09 74.5 7.7 48 15-72 140-192 (262)
30 2xsw_A 72 kDa inositol polypho 97.4 0.0019 6.5E-08 66.8 14.9 33 190-223 305-337 (357)
31 4a9c_A Phosphatidylinositol-3, 95.0 0.24 8.1E-06 50.4 13.1 18 190-207 296-313 (316)
32 3mtc_A Type II inositol-1,4,5- 94.1 0.21 7.3E-06 50.7 10.2 50 15-70 136-195 (313)
33 1hy9_A Cocaine and amphetamine 66.9 3.1 0.00011 29.7 2.2 35 453-501 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 23.4 18 0.00063 23.2 0.2 13 344-356 7-19 (26)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.96 E-value=2.7e-29 Score=243.66 Aligned_cols=159 Identities=25% Similarity=0.413 Sum_probs=138.0
Q ss_pred ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC--
Q 010464 7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-- 79 (510)
Q Consensus 7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~-- 79 (510)
.|.+||++ .|+|+|||+|+... ..+|+. +|++|++.|...+..+...+.+|||+||||+++.++|..+..
T Consensus 91 ~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~--~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~ 167 (265)
T 3g91_A 91 FDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLK--YKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKEN 167 (265)
T ss_dssp HHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHH--HHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGG
T ss_pred cCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHH--HHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhc
Confidence 46789998 58999999999986 468888 999999999999999877789999999999999999987642
Q ss_pred ---CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccc
Q 010464 80 ---PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 156 (510)
Q Consensus 80 ---~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~ 156 (510)
.+|.+.+ |.+|+.++ +.| |+|+||.+||.. +.||||+.+.+++..|.|+||||||+++.++.
T Consensus 168 ~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~-~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~---------- 232 (265)
T 3g91_A 168 SNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP-GQYTWWSYRTRARERNVGWRLDYFFVNEEFKG---------- 232 (265)
T ss_dssp TTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS-CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred CCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC-CCCCCcCCCCCccccCceEEEEEEEECHHHHh----------
Confidence 4566655 89999988 666 999999999987 48999999999999999999999999998753
Q ss_pred cccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464 157 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 157 ~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
.+.++.|+.. ..+|||+||+++|....
T Consensus 233 ---~~~~~~i~~~---------------------~~~SDH~Pv~~~~~~~~ 259 (265)
T 3g91_A 233 ---KVKRSWILSD---------------------VMGSDHCPIGLEIELLE 259 (265)
T ss_dssp ---GEEEEEECTT---------------------CCSSSBCCEEEEEECCC
T ss_pred ---hhcEEEEeCC---------------------CCCCCcceEEEEhhhhh
Confidence 7899999863 36899999999997643
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.95 E-value=9.6e-28 Score=256.59 Aligned_cols=159 Identities=26% Similarity=0.417 Sum_probs=133.1
Q ss_pred ecCCCCEE---------------eEEEEEEeecCCCCccchhhhhHHHHH-HHHHHHHHHHHHHh---------------
Q 010464 7 IVRDGVLL---------------QIMVILFYSMCTGLELIVRIQLEFNLS-FSSSMYYRWEFLLC--------------- 55 (510)
Q Consensus 7 ~d~eGr~~---------------~fvLiNVY~P~~~~~~~eR~~~~fKl~-F~~~L~~ri~~Ll~--------------- 55 (510)
.|.|||++ .|+|+|||+|+.+. ..+|+. ||++ |++.|..++..+..
T Consensus 266 ~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~-~~~r~~--~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g 342 (467)
T 2j63_A 266 GDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGM-GLTRLP--YRVQSFDPSMREYLHRLDTWATENAAVPSAAAMG 342 (467)
T ss_dssp CCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCT-TSTTHH--HHHHTHHHHHHHHHHHHHHHHTTTTC--------
T ss_pred cCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCc-chHHHH--HHHHHHHHHHHHHHHHhhhhcccccccchhhhhc
Confidence 46788877 27899999999875 357888 9984 77888888888752
Q ss_pred ---cCCceEEeccccCCCCccccCCC--------CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCC
Q 010464 56 ---QGRRIFVVGDLNIAPAAIDRCDA--------GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 124 (510)
Q Consensus 56 ---~g~~VIv~GDfNia~~~iD~~d~--------~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~ 124 (510)
.+.+||||||||+++..+|++++ ..+|.+.+ |.||+.+|.+.| |+|+||.+||...+.||||+++.
T Consensus 343 ~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~ 419 (467)
T 2j63_A 343 SGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRI 419 (467)
T ss_dssp --CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTT
T ss_pred ccccCCcEEEeccccCCCchhhhccccchhhcccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCC
Confidence 36899999999999999998762 24677666 999999997666 99999999997667899999999
Q ss_pred CCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 125 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 125 ~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
+++..|+|+||||||+++.+. .+|.+|.|+.. ..+||||||+++|.
T Consensus 420 ~~~~~n~g~RIDyIlvS~~l~-------------~~v~~~~I~~~---------------------~~~SDH~PV~~~l~ 465 (467)
T 2j63_A 420 NGRPRNLGWRLDYFVVSSRLA-------------SYVVDCFPMPT---------------------VMGSDHCPFQMWMR 465 (467)
T ss_dssp TTTTTTCCBCCEEEEEEGGGG-------------GGEEEEEECTT---------------------CCSSSBCCEEEEEE
T ss_pred CcccCCCCceeEEEEEcHHHH-------------cceeEEEECCC---------------------CCCCCcccEEEEEE
Confidence 999999999999999998764 26899999863 47999999999996
Q ss_pred c
Q 010464 205 E 205 (510)
Q Consensus 205 ~ 205 (510)
.
T Consensus 466 ~ 466 (467)
T 2j63_A 466 H 466 (467)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.92 E-value=5.3e-25 Score=210.54 Aligned_cols=158 Identities=27% Similarity=0.325 Sum_probs=126.6
Q ss_pred CCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC-----
Q 010464 10 DGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----- 79 (510)
Q Consensus 10 eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~----- 79 (510)
+||++ .|.|+|||+|+......+|.. +|++|++.|..+++.++..+.+|||+||||+.+..+|.++..
T Consensus 88 ~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~--~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~ 165 (257)
T 2voa_A 88 EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQ--YKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNH 165 (257)
T ss_dssp GGGEEEEEETTEEEEEEECCCCSCTTSHHHH--HHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTS
T ss_pred cCcEEEEEECCEEEEEEEeCCCCCCCcHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCC
Confidence 77877 589999999998753457777 899999999998887755688999999999999988876532
Q ss_pred CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCC-CCCCcccCCcCceEEEEEcCCccccccccccccccc
Q 010464 80 PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 158 (510)
Q Consensus 80 ~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~-~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~ 158 (510)
.++...+ +.+|+.++ +.| |+|+||..||.. +.||||+. +.+++..+.+.||||||+++.+.
T Consensus 166 ~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~p~~-~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~------------- 227 (257)
T 2voa_A 166 VCFHEDA-RRAYKKIL-ELG--FVDVLRKIHPNE-RIYTFYDYRVKGAIERGLGWRGDAILATPPLA------------- 227 (257)
T ss_dssp TTTCHHH-HHHHHHHH-TTT--CEEHHHHHSTTC-CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHH-------------
T ss_pred CCCCHHH-HHHHHHHH-HcC--cEeeehhhCCCC-CCcceeccccCCceecCceEEEEEEEECHHHH-------------
Confidence 3454444 78898887 455 999999999986 57999998 77777778999999999998763
Q ss_pred cceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 159 CHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 159 ~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
..+.++.|....+. ...+|||+||+++|.
T Consensus 228 ~~~~~~~v~~~~~~-----------------~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 228 ERCVDCYADIKPRL-----------------AEKPSDHLPLVAVFD 256 (257)
T ss_dssp TTEEEEEECCHHHH-----------------SSSCCSBCCEEEEEC
T ss_pred hhhheeEeehhhcc-----------------CCCCCCccCEEEEEe
Confidence 25788888764221 137899999999985
No 4
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.91 E-value=3.3e-24 Score=215.04 Aligned_cols=156 Identities=25% Similarity=0.376 Sum_probs=126.6
Q ss_pred ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC---
Q 010464 7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--- 78 (510)
Q Consensus 7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~--- 78 (510)
.|.+||++ .|+|+|||+|+.+. ..+|++ +|++|++.|..++..+... .+|||+||||+.+..+|++++
T Consensus 151 ~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~--~r~~~~~~l~~~l~~~~~~-~pvIl~GDFN~~~~~~D~~~~~~~ 226 (318)
T 1hd7_A 151 HDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE--YRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGN 226 (318)
T ss_dssp GSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHH--HHHHHHHHHHHHHHHHHHH-SCEEEEEECSCCCSGGGBSCHHHH
T ss_pred cCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHH--HHHHHHHHHHHHHHhcccC-CCEEEEeeCCCCChhhhccChhhc
Confidence 36788887 58999999999875 346777 9999999999999887443 789999999999999987542
Q ss_pred --CCCCCchHHHHHH-HHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccc
Q 010464 79 --GPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155 (510)
Q Consensus 79 --~~~f~~~e~R~wl-~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~ 155 (510)
..+|...+ +.+| ..++.. | |+|+||.+||...+.||||+...+++..|+|.||||||+++.+.
T Consensus 227 ~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~---------- 292 (318)
T 1hd7_A 227 KKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLL---------- 292 (318)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGG----------
T ss_pred CCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCCCCCCCcceECCcCCCcccCCceEEEEEEECHHHH----------
Confidence 34566544 8889 888854 6 99999999998644699999887767778899999999998764
Q ss_pred ccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 156 ~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
..|.++.|... ..+|||+||+++|.
T Consensus 293 ---~~v~~~~v~~~---------------------~~~SDH~Pv~~~l~ 317 (318)
T 1hd7_A 293 ---PALCDSKIRSK---------------------ALGSDHCPITLYLA 317 (318)
T ss_dssp ---GGEEEEEECTT---------------------CCSSSBCCEEEEEC
T ss_pred ---hhhhheEeecc---------------------CCCCCccCEEEEec
Confidence 25788998753 35899999999985
No 5
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.91 E-value=3.6e-24 Score=204.15 Aligned_cols=158 Identities=27% Similarity=0.380 Sum_probs=128.2
Q ss_pred cCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC---
Q 010464 8 VRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--- 79 (510)
Q Consensus 8 d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~--- 79 (510)
|.+||++ .|+|+|||+|+... ..+|.. +|++|++.|..+++.+...+.+|||+||||+.+..+|.++..
T Consensus 90 ~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~ 166 (259)
T 2jc5_A 90 DREGRFVRCDFGRLSVISLYLPSGSS-AEERQQ--VKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQ 166 (259)
T ss_dssp HTTCCEEEEEETTEEEEEEECCCCTT-CHHHHH--HHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCT
T ss_pred CCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHH--HHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcC
Confidence 5678877 58999999999875 357888 899999999999988766789999999999999988876532
Q ss_pred --CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccc
Q 010464 80 --PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157 (510)
Q Consensus 80 --~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~ 157 (510)
.+|.+.+ +.+|..++.+.| |+|+||..||...+ ||||+...+.+..++|.||||||+++.+.
T Consensus 167 ~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~------------ 230 (259)
T 2jc5_A 167 KNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDVPG-YTWWSNRGQAYAKDVGWRIDYQMVTPELA------------ 230 (259)
T ss_dssp TSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTCCC-CCEESCSSHHHHTTCEECCEEEEECHHHH------------
T ss_pred CCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCCCC-ccEECCcCCCccCCCeeEEEEEEECHHHH------------
Confidence 2444444 788988886666 99999999997644 99999887666678899999999998763
Q ss_pred ccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 158 ~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
..+.++.|+.. ..+|||+||+++|.+.
T Consensus 231 -~~~~~~~v~~~---------------------~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 231 -AKAVSAHVYKD---------------------EKFSDHAPLVVEYDYA 257 (259)
T ss_dssp -TTEEEEEECCS---------------------SCCSSBCCEEEEESCC
T ss_pred -hHHhheeecCC---------------------CCCCCcccEEEEEecc
Confidence 25788888752 4799999999999753
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.91 E-value=4.3e-24 Score=203.29 Aligned_cols=160 Identities=24% Similarity=0.352 Sum_probs=127.6
Q ss_pred cCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC----
Q 010464 8 VRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---- 78 (510)
Q Consensus 8 d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~---- 78 (510)
+.+||++ .|.|+|||+|+......++++ +|++|++.|...++.++..+.+|||+||||+.+...|+++.
T Consensus 86 ~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~--~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~ 163 (256)
T 2jc4_A 86 DPQRRVIAATVSGVRVINVYCVNGEALDSPKFK--YKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWH 163 (256)
T ss_dssp CCSCCEEEEEETTEEEEEEECCCCCSTTSHHHH--HHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGT
T ss_pred CCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHH--HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhC
Confidence 4567776 589999999998764456777 89999999999998877778999999999999988886542
Q ss_pred -CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccc
Q 010464 79 -GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157 (510)
Q Consensus 79 -~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~ 157 (510)
..++.+.+ +++++.++ +.| |+|+||..||.. +.||||+...+.+..+.+.||||||+++.+.
T Consensus 164 ~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~------------ 226 (256)
T 2jc4_A 164 EKIHCSSVE-RQWFQNLL-DLG--LTDSLRQVHPEG-AFYTWFDYRGAMFQRKLGLRIDHILVSPAMA------------ 226 (256)
T ss_dssp TCTTSCHHH-HHHHHHHH-TTT--CEEHHHHHCCSS-CCCCBCCTTTTHHHHTCCBCCEEEEECHHHH------------
T ss_pred CCCCcCHHH-HHHHHHHH-hcC--cEEhhhhhCCCC-CceeeEcCCCCccccCcEEEEEEEEECHHHH------------
Confidence 23455444 78888877 455 999999999975 5799999887766678899999999998763
Q ss_pred ccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 158 ~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
..+.++.|+...+. ...+|||+||+++|.
T Consensus 227 -~~~~~~~v~~~~~~-----------------~~~~SDH~pv~~~l~ 255 (256)
T 2jc4_A 227 -AALKDVRVDLETRA-----------------LERPSDHAPVTAEFD 255 (256)
T ss_dssp -TTEEEEEECHHHHT-----------------SSSCCSBCCEEEEEC
T ss_pred -hheeEEEEEhhccc-----------------CCCCCCcccEEEEec
Confidence 25788999864221 247899999999985
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.91 E-value=7.9e-24 Score=206.53 Aligned_cols=156 Identities=25% Similarity=0.367 Sum_probs=126.0
Q ss_pred ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC--
Q 010464 7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-- 79 (510)
Q Consensus 7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~-- 79 (510)
.+.+||++ .|+|+|||+|+... ..+|.+ +|++|++.|..+++.+. .+.+|||+||||+.+..+|.+++.
T Consensus 118 ~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~--~r~~~~~~l~~~l~~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~ 193 (285)
T 2o3h_A 118 HDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE--YRQRWDEAFRKFLKGLA-SRKPLVLCGDLNVAHEEIDLRNPKGN 193 (285)
T ss_dssp GSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHH--HHHHHHHHHHHHHHHHH-TTSCEEEEEECSCCCSGGGBSCTTTC
T ss_pred cCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHH--HHHHHHHHHHHHHHhhc-cCCCEEEEEECCCCCchhhccChhhc
Confidence 35678877 58999999998875 356777 89999999999998874 358999999999999988876432
Q ss_pred ---CCCCchHHHHHH-HHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccc
Q 010464 80 ---PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 155 (510)
Q Consensus 80 ---~~f~~~e~R~wl-~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~ 155 (510)
.+|...+ +.+| ..++.. | |+|+||.+||+..+.||||+...+++..+.+.||||||+++.+.
T Consensus 194 ~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~---------- 259 (285)
T 2o3h_A 194 KKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLL---------- 259 (285)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGG----------
T ss_pred CCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCCCCCCcEeEecCcCCccccCceeEEEEEEECHHHH----------
Confidence 3455444 7889 888864 6 99999999998644699999887776678899999999998764
Q ss_pred ccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 156 FVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 156 ~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
..|.++.|... ..+|||+||+++|.
T Consensus 260 ---~~v~~~~v~~~---------------------~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 260 ---PALCDSKIRSK---------------------ALGSDHCPITLYLA 284 (285)
T ss_dssp ---GGEEEEEECTT---------------------CCSSSBCCEEEEEC
T ss_pred ---hhhhheEeecc---------------------CCCCCeecEEEEec
Confidence 25788998752 35899999999986
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.90 E-value=1.9e-23 Score=200.05 Aligned_cols=154 Identities=23% Similarity=0.349 Sum_probs=121.8
Q ss_pred eEEEEEEeecCCCCcc-chhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCC-----------CCCCC
Q 010464 15 QIMVILFYSMCTGLEL-IVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----------AGPDF 82 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~-~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d-----------~~~~f 82 (510)
.|+|+|+|+|+..... +++.. +|.+|++.|...++.+...+.+|||+||||+.+...|... ...+|
T Consensus 102 ~~~v~~~Hl~~~~~~~~~~~~~--~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~ 179 (268)
T 1ako_A 102 NVTVINGYFPQGESRDHPIKFP--AKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSF 179 (268)
T ss_dssp EEEEEEEECCCCCBTTCTTHHH--HHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTS
T ss_pred eEEEEEEEecCCCCcccchhHH--HHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCc
Confidence 7999999999886431 24666 8899999999998876556889999999999999888653 12356
Q ss_pred CchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccccccee
Q 010464 83 AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 162 (510)
Q Consensus 83 ~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~ 162 (510)
.+.+ +.+++.++ +.| |+|+||.+||...+.||||+...++++.|.+.||||||+++.+. ..+.
T Consensus 180 ~~~~-~~~~~~l~-~~g--l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~-------------~~~~ 242 (268)
T 1ako_A 180 LPEE-REWMDRLM-SWG--LVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLA-------------ECCV 242 (268)
T ss_dssp CHHH-HHHHHHHH-HTT--EEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHH-------------TTEE
T ss_pred CHHH-HHHHHHHh-cCC--CEEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHH-------------HHHH
Confidence 6654 77888766 455 99999999998666799999988777778899999999998764 2567
Q ss_pred eEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 163 ECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 163 ~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
++.|....+. ...+|||+||+++|.
T Consensus 243 ~~~i~~~~~~-----------------~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 243 ETGIDYEIRS-----------------MEKPSDHAPVWATFR 267 (268)
T ss_dssp EEEECHHHHT-----------------SSSCCSBCCEEEEEC
T ss_pred hceechhhcC-----------------CCCCCCcccEEEEcc
Confidence 8888764221 237899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.84 E-value=7.1e-21 Score=178.72 Aligned_cols=139 Identities=20% Similarity=0.350 Sum_probs=104.4
Q ss_pred ecCCCCEE---------eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCC
Q 010464 7 IVRDGVLL---------QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCD 77 (510)
Q Consensus 7 ~d~eGr~~---------~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d 77 (510)
.|.+||++ .|.|+|||+|+... + +|++.|...+..+ .+.+|||+||||+.+...|...
T Consensus 91 ~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~--------~~~~~l~~~l~~~--~~~~~Il~GDFN~~~~~~~~~~ 157 (238)
T 1vyb_A 91 RDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P--------RFIKQVLSDLQRD--LDSHTLIMGDFNTPLSTLDRST 157 (238)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H--------HHHHHHHHHTTTT--CCTTEEEEEECSSCSSGGGBTT
T ss_pred EcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H--------HHHHHHHHHHHhc--cCCCEEEEccCCCCCCccccCC
Confidence 45678876 58899999998753 2 2445554444432 3679999999999988877654
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccc
Q 010464 78 AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157 (510)
Q Consensus 78 ~~~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~ 157 (510)
..+...+ +.+|..++.+.| |+|+||.+||.. ..||||+...+ .+.||||||+++.+..
T Consensus 158 --~~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~-~~~T~~~~~~~-----~~~rID~i~~s~~~~~----------- 215 (238)
T 1vyb_A 158 --RQKVNKD-TQELNSALHQAD--LIDIYRTLHPKS-TEYTFFSAPHH-----TYSKIDHIVGSKALLS----------- 215 (238)
T ss_dssp --CCCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTC-CCCSEEETTTT-----EEECCEEEEEEGGGGG-----------
T ss_pred --CCCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCC-CceeEEcCCCC-----cccceEEEEeCHHHHh-----------
Confidence 2344444 778988887777 999999999975 45999987643 2579999999987642
Q ss_pred ccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 158 ~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
.+.++.|.. ..+|||+||+++|.
T Consensus 216 --~~~~~~v~~----------------------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 216 --KCKRTEIIT----------------------NYLSDHSAIKLELR 238 (238)
T ss_dssp --GEEEEEEEC----------------------CSSSSSCEEEEEEC
T ss_pred --hhhhceeec----------------------CCCCCcccEEEEeC
Confidence 678888875 26899999999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.80 E-value=6.3e-20 Score=178.88 Aligned_cols=135 Identities=15% Similarity=0.089 Sum_probs=94.6
Q ss_pred cCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC---
Q 010464 8 VRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--- 79 (510)
Q Consensus 8 d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~--- 79 (510)
+.+++++ .|+|+|||+|++... + +|++|++.|...+ .++++|||||||+++.. ++..
T Consensus 77 ~~~~~~i~i~~~~i~i~svY~P~~~~~-----~--~~~~~l~~l~~~~-----~~~~~Ii~GDfN~~~~~---w~~~~~~ 141 (240)
T 2ei9_A 77 STHITVVHIGGWDLYMVSAYFQYSDPI-----D--PYLHRLGNILDRL-----RGARVVICADTNAHSPL---WHSLPRH 141 (240)
T ss_dssp CSSEEEEEETTTTEEEEEEECCTTSCS-----H--HHHHHHHHHHHHT-----TTSCEEEEEECCCCCGG---GTCCHHH
T ss_pred CCCEEEEEEeeccEEEEEEEcCCCCch-----h--HHHHHHHHHHHhc-----CCCcEEEEEeccccccc---ccCCCCC
Confidence 3455565 489999999998642 4 7888888885432 35799999999998753 3321
Q ss_pred CCCCchHHHHHHHHHHHHcCCcccccccc--cCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccccccc
Q 010464 80 PDFAKNEFRIWFRSMLVESGGSFFDVFRS--KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 157 (510)
Q Consensus 80 ~~f~~~e~R~wl~~lL~~~G~~lvDv~R~--~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~ 157 (510)
..+.+.+ |.+...+|. + |+|.+|. +||.. +.||||+.+. |+||||||+|+.++
T Consensus 142 ~~~~~~~-r~~~~~~l~--~--~~d~~~l~~~~~~~-~~~T~~s~~~-------~~rID~~l~s~~l~------------ 196 (240)
T 2ei9_A 142 YVGRGQE-VADRRAKME--D--FIGARRLVVHNADG-HLPTFSTANG-------ESYVDVTLSTRGVR------------ 196 (240)
T ss_dssp HSSSCHH-HHHHHHHHH--H--HHHHTTCEECCCTT-CCCSEEETTE-------EECCEEEEECTTCC------------
T ss_pred CCCcchh-hHHHHHHHH--H--HHHhcCCEecCCCC-CCceEeCCCC-------ceEEEEEEecCccc------------
Confidence 1344444 555555562 4 9999994 58854 4799998542 69999999999874
Q ss_pred ccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464 158 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 158 ~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
. .++.|.. ..+|||+||+++|....
T Consensus 197 --~-~~~~i~~----------------------~~~SDH~Pv~~~l~~~~ 221 (240)
T 2ei9_A 197 --V-SEWRVTN----------------------ESSSDHRLIVFGVGGGT 221 (240)
T ss_dssp --E-EEEEECS----------------------CCSSSBCCEEEEEEC--
T ss_pred --c-CCeEECC----------------------CCCCCcccEEEEECCCC
Confidence 2 4555542 37999999999998764
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.71 E-value=7e-17 Score=154.78 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=87.8
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|.|+|||+|+... +. .|++.|...++.+ .+.++||+||||+.+...+. .. . .+.+++|..+
T Consensus 116 ~~~v~~vy~p~~~~----~~------~~~~~l~~~~~~~--~~~~~Ii~GDfN~~~~~~~~---~~--~-~~~~~~l~~~ 177 (245)
T 1wdu_A 116 EITLVSYYFEPDKP----IE------SYLEQIKRVERKM--GPKRLIFGGDANAKSTWWGS---KE--D-DARGDQLMGT 177 (245)
T ss_dssp EEEEEEEECCTTSC----SH------HHHHHHHHHHHTT--CSSSEEEEEECCCCCGGGTC---SS--C-CHHHHHHHHH
T ss_pred cEEEEEEEeCCCCC----HH------HHHHHHHHHHHHh--CCCcEEEEeccccCcccCCC---CC--c-CcchHHHHHH
Confidence 69999999998753 11 2555665555443 45799999999998754331 11 1 2235678777
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
+.+.| | |..+|. +.||||+...+ .+.++||||||+++.++. .|.++.|...
T Consensus 178 ~~~~~--l----~~~~~~--~~~T~~~~~~~---~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~----- 228 (245)
T 1wdu_A 178 LGELG--L----HILNEG--DVPTFDTIRGG---KRYQSRVDVTFCTEDMLD-------------LIDGWRVDED----- 228 (245)
T ss_dssp HHHHT--C----EECCCS--CCCSEEC--------CCEECCEEEEECGGGBT-------------TEEEEEECTT-----
T ss_pred HHHCC--c----EEecCC--CCCcEECCCCC---CCCCCEEEEEEeChHHHh-------------hccceEEcCC-----
Confidence 76666 4 456663 46999997653 245899999999987653 6788888752
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~ 205 (510)
..+|||+||+++|..
T Consensus 229 ----------------~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 229 ----------------LVSSDHNGMVFNIRL 243 (245)
T ss_dssp ----------------SSSSSBCCEEEEECC
T ss_pred ----------------CCCCCcccEEEEEEe
Confidence 479999999999974
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.60 E-value=3.4e-15 Score=153.96 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=89.9
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHH--hcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 92 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll--~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~ 92 (510)
.|.|+|+|.++.+....+|. ..+..|..++..+. ..+.+|||+||||+.+...++.
T Consensus 225 ~l~v~ntHL~s~~~~~~~R~------~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~---------------- 282 (362)
T 4gew_A 225 KVFLLNTHLESTREHRPQRC------AQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV---------------- 282 (362)
T ss_dssp EEEEEEEECCCSGGGHHHHH------HHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC----------------
T ss_pred EEEEEEecCCccccchhHHH------HHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh----------------
Confidence 68999999998765433343 23444444454443 3578999999999976543211
Q ss_pred HHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccC--CcCceEEEEEcCCccccccccccccccccceeeEEEeccc
Q 010464 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN--YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170 (510)
Q Consensus 93 ~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N--~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~ 170 (510)
..| |.|+||.+++.....||||.........+ .+.||||||+++.+ .+..+.++...
T Consensus 283 ----~~g--l~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ 341 (362)
T 4gew_A 283 ----PDG--VKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQ 341 (362)
T ss_dssp ----CTT--CEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCS
T ss_pred ----cch--HHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeee
Confidence 124 99999999876656799998776554433 45799999999876 44566665321
Q ss_pred cccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 171 r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
+ ++ ..+.++|||+||+++|.
T Consensus 342 r------i~--------~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 342 R------IR--------SCLCFPSDHWAINATFF 361 (362)
T ss_dssp C------CT--------TTSSCSCSSCEEEEEEE
T ss_pred e------cC--------CCCCCCCcccCEEEEEc
Confidence 1 10 12346899999999985
No 13
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.60 E-value=1.6e-15 Score=144.83 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=87.2
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|+|+|+|.+........|.. .++.|...+. .+.+|||+||||..+.. ....++.+
T Consensus 136 ~~~v~~~Hl~~~~~~~~~r~~------q~~~l~~~~~----~~~~~il~GDfN~~~~~--------------~~~~~~~l 191 (266)
T 3teb_A 136 DIEFYSCHMNLPNCETEDMGK------NIQTILNRTQ----NSNLKILMGDFNTDAIG--------------NVAAYENI 191 (266)
T ss_dssp EEEEEEEECCCTTCTTCCHHH------HHHHHHTSSC----SCCEEEEEEECCCCTTT--------------CHHHHHHH
T ss_pred EEEEEEecCCCccCChHHHHH------HHHHHHHHHh----cCCcEEEEeECCCCCCC--------------CCcHHHhh
Confidence 789999999887533233433 4555544332 37899999999996521 02345555
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
+ +.| |+|+|+..+|.. ..|||......-...+.+.||||||+++.+ .+..+.|+....
T Consensus 192 ~-~~~--l~d~~~~~~~~~-~~~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~--- 249 (266)
T 3teb_A 192 L-SQG--LFDTYVMAEKKD-DGITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNK--- 249 (266)
T ss_dssp H-TTT--CEEHHHHCSEEC-CCCCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSS---
T ss_pred c-ccc--ccchHHhhcccc-CCccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCC---
Confidence 5 334 999999999975 458885443322223467899999999875 578888876411
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~ 205 (510)
.+..+|||+||+++|.+
T Consensus 250 --------------~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 250 --------------NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp --------------SSCCCSSSCEEEEEECC
T ss_pred --------------CCCCcCCccCEEEEEEC
Confidence 12478999999999863
No 14
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.59 E-value=8e-15 Score=137.95 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=86.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHH--hcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 92 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll--~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~ 92 (510)
.|.|+|+|.+.......+|.. .++.+...+..+. ..+.+|||+||||+.+...+..
T Consensus 119 ~~~v~~~Hl~~~~~~~~~~~~------q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~---------------- 176 (256)
T 4fva_A 119 KVFLLNTHLESTREHRPQRCA------QFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV---------------- 176 (256)
T ss_dssp EEEEEEEECCCSGGGHHHHHH------HHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC----------------
T ss_pred EEEEEEecCCCCCcchHHHHH------HHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh----------------
Confidence 689999999987654333332 2333333444333 3578999999999865432210
Q ss_pred HHHHHcCCcccccccccCCCCCCCcccCCCCCCCccc--CCcCceEEEEEcCCccccccccccccccccceeeEEEeccc
Q 010464 93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 170 (510)
Q Consensus 93 ~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~--N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~ 170 (510)
..+ |.|+|+..++.....|||+......... ..+.||||||+++.+ .+..+.+....
T Consensus 177 ----~~~--~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~ 235 (256)
T 4fva_A 177 ----PDG--VKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQ 235 (256)
T ss_dssp ----CTT--CEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCS
T ss_pred ----hcc--hhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeE
Confidence 123 9999999987765679998765443322 346799999999876 45566665321
Q ss_pred cccCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 171 KRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 171 r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
+ ++ .....+|||+||+++|.
T Consensus 236 ~------~~--------~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 236 R------IR--------SCLCFPSDHWAINATFF 255 (256)
T ss_dssp C------CT--------TTCSCSCSSCEEEEEEE
T ss_pred e------cC--------CCCCCcCcccCEEEEEc
Confidence 1 00 11346799999999985
No 15
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.53 E-value=2.4e-14 Score=138.02 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=90.8
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|+|+|+|.+..+. . .|.+.++.|..+++.+. .+.+|||+||||..+.. + .++.|
T Consensus 131 ~~~v~~~Hl~~~~~--~------~R~~q~~~l~~~l~~~~-~~~pvIl~GDfN~~~~~-------------~---~~~~l 185 (267)
T 3g6s_A 131 IFMAVNTHFDHVGE--E------ARRQSALLIIRKIKEIV-GERPAVVTGDFNVTDAS-------------D---AYETI 185 (267)
T ss_dssp EEEEEEEECCSSCH--H------HHHHHHHHHHHHHHHHT-TTSCEEEEEECSSCTTS-------------H---HHHHH
T ss_pred EEEEEEeCCCCCCH--H------HHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCCC-------------H---HHHHh
Confidence 68999999987653 2 44457778878887763 48899999999996542 1 13333
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
. ..|..|.|+|+..++.....|||+..... ..+.+.||||||+++++ .+..+.|+...
T Consensus 186 ~-~~~~~l~d~~~~~~~~~~~~~T~~~~~~~--~~~~~~riD~I~~s~~~---------------~~~~~~v~~~~---- 243 (267)
T 3g6s_A 186 T-TNEFVMKDAYKTAARVTGVDYTFHDFARI--PAEDCEKIDFIFVTPQV---------------LVKSCEIPAEV---- 243 (267)
T ss_dssp H-SSSSCCEEHHHHCSEEEECSCSBCTTTTS--CGGGCCCCEEEEECTTS---------------EEEEEEECCCC----
T ss_pred h-cCCcchhhhHhhhccccCCCCCEeCCCCC--CCCCCCcEeEEEeCCCc---------------eEEEEEEecCC----
Confidence 3 22114999999987533245888665432 13567999999999875 67888887631
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
..+ .+|||+||+++|...+
T Consensus 244 -------------~~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 244 -------------PEA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp -------------SSS-CCCSBCCEEEEEEEC-
T ss_pred -------------CCC-CCCCcccEEEEEEecc
Confidence 013 6899999999997643
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.52 E-value=1.4e-14 Score=135.86 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=86.1
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|.|+|+|.+....... .+.+.+..|...++.. ..+.+|||+||||+.+...+ ...
T Consensus 115 ~~~v~~~Hl~~~~~~~~------~~~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~----------------~~~- 170 (256)
T 4gz1_A 115 EFCLMTSHLESTREHSA------ERIRQLKTVLGKMQEA-PDSTTVIFAGDTNLRDQEVI----------------KCG- 170 (256)
T ss_dssp EEEEEECBCCCSGGGHH------HHHHHHHHHHHHHHHS-CTTSEEEEEEECCCCHHHHH----------------HHT-
T ss_pred EEEEEeecccccccchh------hhhHHHHHHhhhhhhc-cCcceEEEeCccCCCcchhh----------------hhh-
Confidence 68999999987654322 2333455555555442 45789999999998543211 111
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCC--CcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccc
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~--ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~ 172 (510)
+.. ..+.|+|+..++.....|+|+..... ....+.+.||||||+++.... + .+..+++....+
T Consensus 171 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~- 235 (256)
T 4gz1_A 171 GLP--DNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEK- 235 (256)
T ss_dssp CSC--TTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSC-
T ss_pred hcc--chhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEeccc-
Confidence 112 24999999998765556776654322 234567899999999876421 1 234445443211
Q ss_pred cCCCCCCCccccCCCCCCCCCCCccceEEEEecc
Q 010464 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 206 (510)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~ 206 (510)
+ .....+|||+||+++|++.
T Consensus 236 -----~---------~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 236 -----L---------DCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp -----C---------TTSSCSCSBCEEEEEEEEC
T ss_pred -----c---------CCCCCCCccccEEEEEEEE
Confidence 1 1245789999999999864
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.50 E-value=6.3e-14 Score=134.10 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=88.5
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|+|+|+|.+..+. . .|++.++.|..+++..+..+ +|||+||||..+.. + .++ +
T Consensus 125 ~~~v~~~Hl~~~~~------~--~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~-------------~---~~~-~ 178 (257)
T 3l1w_A 125 PFLVINVHLDHISA------H--ARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE-------------E---VHQ-L 178 (257)
T ss_dssp CEEEEEEECCSSCH------H--HHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS-------------H---HHH-H
T ss_pred EEEEEEeCCCCCCH------H--HHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc-------------H---HHH-H
Confidence 68999999987643 2 44557777777777434455 99999999986542 1 122 3
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccccC
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 174 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~~~ 174 (510)
|. .| |.|+|+..++.. ..+||.... ..++.+.+.||||||+ +.+ .+.++.|+....
T Consensus 179 l~-~~--l~d~~~~~~~~~-~~~t~~~~~-~~~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~--- 234 (257)
T 3l1w_A 179 VQ-KK--FQDSKNLATHYG-PRGTFQNFT-YTKPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI--- 234 (257)
T ss_dssp HT-TT--CEEGGGTSEEES-CSCCBCTTC-TTCCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB---
T ss_pred hh-hh--ccchhhhhcccC-CCCcccCCc-ccCCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc---
Confidence 32 24 999999998763 457765432 2245567899999999 554 577888875311
Q ss_pred CCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464 175 PGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
....+|||+||+++|....
T Consensus 235 --------------~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 235 --------------DGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp --------------TTBCSSSBCCEEEEEEEC-
T ss_pred --------------CCcccCCcceEEEEEEEEe
Confidence 1347899999999998653
No 18
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.49 E-value=4.9e-14 Score=129.80 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=85.2
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~l 94 (510)
.|.|+|+|.+....... .+.+.++.|.++++.. ..+.+|||+||||+.+...+...
T Consensus 109 ~~~v~~~hl~~~~~~~~------~r~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~~~----------------- 164 (250)
T 4f1h_A 109 KLYLMTSHLESCKNQSQ------ERTKQLRVVLQKIKEA-PEDAIVIFAGDTNLRDAEVANVG----------------- 164 (250)
T ss_dssp EEEEEECBCCCSGGGHH------HHHHHHHHHHHHHHHS-CTTEEEEEEEECCCCHHHHHTTT-----------------
T ss_pred EEEEeccccccccccHH------HHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCcchhhhh-----------------
Confidence 68999999987654322 3344566666666543 35678999999998654322111
Q ss_pred HHHcCCcccccccccCCCCCCCcccCCCCCC--CcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccc
Q 010464 95 LVESGGSFFDVFRSKHPERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 172 (510)
Q Consensus 95 L~~~G~~lvDv~R~~hP~~~~~YTcws~~~~--ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~ 172 (510)
+ ....+.|+|+.+++.....++|+..... ....+.+.||||||+++.... .. ..+....+....+
T Consensus 165 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~-------~~---~~~~~~~~~~~~~- 231 (250)
T 4f1h_A 165 G--LPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTA-------PP---VTPDHMALIGMEK- 231 (250)
T ss_dssp S--SCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTS-------CC---CEEEEEEEECCSC-
T ss_pred h--ccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccc-------cc---eeeeEEEEecccc-
Confidence 1 1123889999998876556666554322 233456789999999986532 00 1233334432110
Q ss_pred cCCCCCCCccccCCCCCCCCCCCccceEEEEe
Q 010464 173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLG 204 (510)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~ 204 (510)
+ .....+|||+||+++|+
T Consensus 232 -----~---------~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 232 -----L---------DCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp -----C---------TTSSCSCSBCEEEEEEE
T ss_pred -----c---------CCCCCCCcccCEEEEEe
Confidence 1 12356899999999986
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.42 E-value=8.6e-13 Score=129.10 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=69.3
Q ss_pred eEEEEEEeecCCCCcc--chhhhhHHHHHHHHHHHHHHHHH-HhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHH
Q 010464 15 QIMVILFYSMCTGLEL--IVRIQLEFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWF 91 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~--~eR~~~~fKl~F~~~L~~ri~~L-l~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl 91 (510)
.|.|+|+|.++..... ..... .|++.++.|...++.+ ...+.+||||||||+.+.. . .+
T Consensus 144 ~~~v~~~Hl~~~~~~~~~~~~~~--~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~------------~----~~ 205 (301)
T 1zwx_A 144 PYHIIGTHTQADDSLISKDTSRA--IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT------------D----EY 205 (301)
T ss_dssp EEEEEEEECCCCCTTSCHHHHHH--HHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS------------H----HH
T ss_pred EEEEEEecCCCCCCCCCccccHH--HHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc------------H----HH
Confidence 6899999998875321 12334 6777888888888775 3456899999999997653 1 24
Q ss_pred HHHHHHcCCccc--ccccccCCCCCCCcccCCCCC----CCcccCCcCceEEEEEcCCcc
Q 010464 92 RSMLVESGGSFF--DVFRSKHPERREAYTCWPSNT----GAEQFNYGTRIDHILCAGPCL 145 (510)
Q Consensus 92 ~~lL~~~G~~lv--Dv~R~~hP~~~~~YTcws~~~----~ar~~N~GsRIDyILvS~~l~ 145 (510)
+.|+...+ +. |+|+- ..|||..... ..++.+.+.||||||+++.++
T Consensus 206 ~~l~~~~~--~~~~d~~~g------~~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~~ 257 (301)
T 1zwx_A 206 HDMLKLLN--VSSPANFNG------QMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHA 257 (301)
T ss_dssp HHHHHHHT--BCCCTTCCT------TSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred HHHHHHcC--CCCCccccC------CCceECCccCccccccCCCCCcceEeEEEEeCCCC
Confidence 45554455 65 88872 2477743111 012224578999999998753
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=7.7e-13 Score=130.82 Aligned_cols=147 Identities=18% Similarity=0.127 Sum_probs=88.5
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh-cCCceEEeccccCCCCccccCCCCCCCCchHHHHHHHH
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 93 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~-~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl~~ 93 (510)
.|+|+|+|.+..+. . .|.+.++.|...+..+.. .+.+||||||||..+.. ..++.
T Consensus 135 ~~~v~~~Hl~~~~~--~------~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~ 190 (298)
T 3mpr_A 135 EFLFFNLHMDHIGK--K------ARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDA 190 (298)
T ss_dssp EEEEEEEECCSSCH--H------HHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHH
T ss_pred EEEEEEecCCCCCH--H------HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHH
Confidence 68999999986542 2 445567777777776532 57899999999986542 12444
Q ss_pred HHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccc-
Q 010464 94 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR- 172 (510)
Q Consensus 94 lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~- 172 (510)
|.. . +.|.|+|+..++.....+||...... ...+.||||||+++++ .|..+.|+....+
T Consensus 191 l~~-~-g~l~D~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~---------------~v~~~~v~~~~~~~ 250 (298)
T 3mpr_A 191 FVS-K-GVLCDSYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF---------------HVKRYGVLTDTYRS 250 (298)
T ss_dssp HHT-T-SSSEEHHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS---------------EEEEEEECCCCEEE
T ss_pred Hhc-C-CcchhhHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe---------------eEEEEEEecCcccc
Confidence 442 2 34999999887532234777543211 2256899999999875 5677777643110
Q ss_pred -------cCCCCCCC-ccccCCCCCCCCCCCccceEEEEeccC
Q 010464 173 -------WKPGNAPS-YRWKGGMSTRLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 173 -------~~~~~~~~-~~~~~~~~~~~~gSDH~PV~~~L~~~~ 207 (510)
....+.+. +.+. .......|||+||+++|....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 251 VRENSKKEDVRDCPEEITIK--AYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp ECC----------------C--CEEEECSSSBCCEEEEEEECS
T ss_pred CCCcccccCcccchhhhccC--hhhcccCCCCCcEEEEEecch
Confidence 00001110 0000 001225799999999997643
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.33 E-value=7.3e-12 Score=122.53 Aligned_cols=112 Identities=11% Similarity=-0.010 Sum_probs=68.4
Q ss_pred eEEEEEEeecCCCCcc--chhhhhHHHHHHHHHHHHHHHHH-HhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHH
Q 010464 15 QIMVILFYSMCTGLEL--IVRIQLEFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWF 91 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~--~eR~~~~fKl~F~~~L~~ri~~L-l~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl 91 (510)
.|.|+|+|.++..... ..... .|.+.++.|...++.+ ...+.+|||+||||+.+...|..+ ..+ +
T Consensus 144 ~~~v~~~Hl~~~~~~~~~~~~~~--~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~------s~~----~ 211 (306)
T 2ddr_A 144 FVHVIGTHLQAEDSMCGKTSPAS--VRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN------DSE----Y 211 (306)
T ss_dssp EEEEEEEECCCC-------CHHH--HHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT------TSH----H
T ss_pred EEEEEEECCCCCCCCcccccCHH--HHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC------CHH----H
Confidence 5899999998774311 12333 6777888888888775 235679999999999887665321 112 4
Q ss_pred HHHHHHcCCcccccccccCCCCCCCcccCCCCCC----CcccCCcCceEEEEEcCCcc
Q 010464 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 145 (510)
Q Consensus 92 ~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~----ar~~N~GsRIDyILvS~~l~ 145 (510)
+.|+...+ +.|. .. .. ..|||...... .++.+.+.||||||+++.+.
T Consensus 212 ~~l~~~~~--~~~~--~~--~g-~~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 212 ASMFKTLN--ASVP--SY--TG-HTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp HHHHHHHT--BCCC--EE--EE-CSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred HHHHHhcC--CCCc--cc--CC-CCcccCCCCCccccccCCCCCcceeeEEEEeCCCC
Confidence 44554445 5552 22 11 25887432110 12224578999999998764
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.21 E-value=9e-11 Score=117.77 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=70.4
Q ss_pred eEEEEEEeecCCCCcc--chhhhhHHHHHHHHHHHHHHHHH-HhcCCceEEeccccCCCCccccCCCCCCCCchHHHHHH
Q 010464 15 QIMVILFYSMCTGLEL--IVRIQLEFNLSFSSSMYYRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWF 91 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~--~eR~~~~fKl~F~~~L~~ri~~L-l~~g~~VIv~GDfNia~~~iD~~d~~~~f~~~e~R~wl 91 (510)
.|.|+|+|.+...... .+... .|.+.+..|..+++.+ +..+.+|||+||||..+.. . .+
T Consensus 163 ~v~v~~~Hl~~~~~~~~~~~~~~--~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s------------~----~~ 224 (317)
T 3i41_A 163 NVHVIGTHTQSEDSRCGAGHDRK--IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT------------P----EF 224 (317)
T ss_dssp EEEEEEEECCCCCSSSCTTHHHH--HHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS------------H----HH
T ss_pred EEEEEEECCCCCCCCCcccccHH--HHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC------------H----HH
Confidence 6899999998765321 12233 6777888888888875 3457899999999997642 1 24
Q ss_pred HHHHHHcCCcccccccccCCCCCCCcccCCCCCC----CcccCCcCceEEEEEcCCcc
Q 010464 92 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 145 (510)
Q Consensus 92 ~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~----ar~~N~GsRIDyILvS~~l~ 145 (510)
+.|+...+ +.|.-. .. ..|||+..... .++.+.+.||||||+++..+
T Consensus 225 ~~l~~~l~--l~~~~~-~g----~~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 225 KDMLKNLN--VNDVLY-AG----HNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp HHHHHHHT--BCCCEE-EE----CSCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred HHHHHhcC--CCCccc-CC----CCcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 44554445 777522 11 14787664321 34556678999999999864
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=5.4e-09 Score=116.74 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=0.0
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh-----------cCCceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC-----------QGRRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~-----------~g~~VIv~GDfNia~~~ 72 (510)
.|+|+|+|.+........|.. -...|.++++.+.+ .+.+||||||||..++.
T Consensus 548 ~l~V~ntHL~~~p~~~~~R~~------Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 548 TIWAVTTHLHWDPKFNDVKTF------QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp ---------------------------------------------------------------------
T ss_pred eEEEEEeccccCCCCCchHHH------HHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 578899998765322234443 33344444444322 36689999999998775
No 24
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=98.27 E-value=4.7e-06 Score=87.43 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=36.9
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh-------------cCCceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC-------------QGRRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~-------------~g~~VIv~GDfNia~~~ 72 (510)
.|+|+|+|.-.... +-. -|+.-...|.++++++.. ...+||||||||..++.
T Consensus 196 ~l~V~nTHL~~~p~----~~~--vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 196 LLIVANAHMHWDPE----YSD--VKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp EEEEEEEECCCCTT----CHH--HHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred EEEEEEeCcCCCCC----CHH--HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 58999999876432 223 556677777777777642 24689999999998764
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.25 E-value=8.8e-07 Score=85.54 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=29.1
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHH--hcCCceEEeccccCCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLL--CQGRRIFVVGDLNIAPA 71 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll--~~g~~VIv~GDfNia~~ 71 (510)
.|+|+|+|.+..+. . + . .+.|...+..+. ....+|||+||||..+.
T Consensus 127 ~~~vi~~Hl~~~~~---~--~---q---~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 127 EFAIVALHSAPSDA---V--A---E---INSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp EEEEEECCCCGGGH---H--H---H---HHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred eEEEEEecCCCCCc---H--H---H---HHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 68999999985432 1 1 1 234444443332 24579999999999654
No 26
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.24 E-value=1.2e-06 Score=87.20 Aligned_cols=49 Identities=10% Similarity=-0.084 Sum_probs=30.2
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAP 70 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~ 70 (510)
.|.++|++..+......+|.. -++.|..++.. +....+|||+||||.-.
T Consensus 128 ~~~fvn~HL~~~~~~~~~R~~------~~~~I~~~~~~-~~~~~~vi~~GDfN~r~ 176 (282)
T 2imq_X 128 RFSFTTSRMSDEDVTSTNTKY------AYDTRLDYSKK-DDPSDFLFWIGDLNVRV 176 (282)
T ss_dssp EEEEEEEECCTTCCCTTSSSS------SCCGGGCTTSS-SSCCSEEEEEEECSCCB
T ss_pred EEEEEEECCCCCCchHHHHHH------HHHHHHHhhhc-cCccceEEEeccccccc
Confidence 689999999987432234443 22233333222 23556899999999743
No 27
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=97.85 E-value=8.2e-05 Score=76.66 Aligned_cols=48 Identities=13% Similarity=0.006 Sum_probs=29.7
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHH----HHhcCCceEEeccccC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEF----LLCQGRRIFVVGDLNI 68 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~----Ll~~g~~VIv~GDfNi 68 (510)
.|.++|+|...+.....+|.. -+..+..++.- .+....+|||+||||.
T Consensus 159 ~l~fvn~HLaa~~~~~~~R~~------d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNy 210 (347)
T 1i9z_A 159 GLCFITSHLAAGYTNYDERDH------DYRTIASGLRFRRGRSIFNHDYVVWFGDFNY 210 (347)
T ss_dssp EEEEEEEECCCCSSCHHHHHH------HHHHHHHHCCCGGGCCTTSSSEEEEEEECCC
T ss_pred EEEEEEecCCCCCccHHHHHH------HHHHHHHhhccCcccccccCccEEEeccccc
Confidence 699999999887643233433 44444333210 0134578999999995
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=97.69 E-value=0.00018 Score=71.65 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=29.0
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHh-cC---CceEEeccccCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLC-QG---RRIFVVGDLNIA 69 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~-~g---~~VIv~GDfNia 69 (510)
.++++++|+...+. .|+.. -.+.|..+++.... .+ .++||+||||..
T Consensus 131 g~~f~s~Hl~~~~~--~ea~~------~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 131 TDVFFTVHALATGG--SDAVS------LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp TEEEEEEECCTTTT--TTHHH------HHHHHHHHHHC---CGGGGGCEEEEEEECSSC
T ss_pred CeEEEEeCCCCCCC--chHHH------HHHHHHHHHHhcccCCcccCCcEEEEeeCCCC
Confidence 37999999987752 24433 23445554443200 23 699999999985
No 29
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=97.68 E-value=6.8e-05 Score=74.51 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=32.4
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcC-----CceEEeccccCCCCc
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQG-----RRIFVVGDLNIAPAA 72 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g-----~~VIv~GDfNia~~~ 72 (510)
.++++|+++-..+. .+|.. -.+.+.+++... .. .++||+||||..|+.
T Consensus 140 ~~~ff~tHa~a~~g--~da~a------~v~~I~~~~~~~--~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRN--NDAPA------LVEEVYNFFRDS--RDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSS--CSHHH------HHHHHHHHHHTC--SSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCC--ccHHH------HHHHHHHHHhcC--cccccCCCcEEEEecCCCCCcc
Confidence 58899999988753 45554 344444444331 23 499999999998764
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=97.44 E-value=0.0019 Score=66.79 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCCCCCccceEEEEeccCCCCCCCCCcccccccc
Q 010464 190 RLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 223 (510)
Q Consensus 190 ~~~gSDH~PV~~~L~~~~~~~~~~~p~L~~r~lp 223 (510)
++..|||-||++.|.... -+....++|++.++.
T Consensus 305 ~~~~SDHrPV~a~f~v~v-~~~~~~ipl~~~~f~ 337 (357)
T 2xsw_A 305 GIKTSDHRPVYGLFRVKV-RPGRDNIPLAAGKFD 337 (357)
T ss_dssp TCCSSSSCCEEEEEEEEC-CCCCSCSCBCSSCCC
T ss_pred cccCCCcCCceeEEEEEE-ecCCccccccccccC
Confidence 467899999999998765 344556889999873
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=95.03 E-value=0.24 Score=50.40 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCCCCCccceEEEEeccC
Q 010464 190 RLEGSDHAPVYMCLGEVP 207 (510)
Q Consensus 190 ~~~gSDH~PV~~~L~~~~ 207 (510)
++..|||-||++.|....
T Consensus 296 ~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 296 DIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp SCCSSSSCCEEEEEEEEC
T ss_pred CcCCCCcccEEEEEEEEE
Confidence 578999999999997653
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=94.14 E-value=0.21 Score=50.71 Aligned_cols=50 Identities=22% Similarity=0.125 Sum_probs=29.3
Q ss_pred eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHH----------HHhcCCceEEeccccCCC
Q 010464 15 QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEF----------LLCQGRRIFVVGDLNIAP 70 (510)
Q Consensus 15 ~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~----------Ll~~g~~VIv~GDfNia~ 70 (510)
.|.+||.+..+......+| ..=|..|..++.- .+.....||++||||--.
T Consensus 136 s~cFVnsHLaA~~~~~~~R------n~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi 195 (313)
T 3mtc_A 136 SICVVNSHLAAHIEEYERR------NQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRI 195 (313)
T ss_dssp EEEEEEEECCCSGGGHHHH------HHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCB
T ss_pred EEEEEeeccCCCchHHHHH------HHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccc
Confidence 6899999998775432223 3344444333310 011234699999999744
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=66.90 E-value=3.1 Score=29.71 Aligned_cols=35 Identities=31% Similarity=0.874 Sum_probs=25.7
Q ss_pred CCCcCCCCCCCcceeeeccCCCCCCccceecCCCCCCCCCCCCCCCcee
Q 010464 453 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 501 (510)
Q Consensus 453 ~~P~C~~h~~p~~~~~vkK~GpN~GR~Fy~C~~p~g~~~~~~~~C~fF~ 501 (510)
..|.|.- ||.|.+| +|+-.||. |.=|+| ..|+||+
T Consensus 3 ~~P~Cd~-GeqCAvR----kG~Rigkl---C~C~rg------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCDA-GEQCAVR----KGARIGKL---CDCPRG------TSCNSFL 37 (41)
T ss_dssp CCCBCCS-SSCSEEE----CSSSEEEC---CBCCTT------CCBCTTT
T ss_pred cCCcCCc-cchhhhh----cccccchh---cCCCCC------Ccchhhh
Confidence 4799995 8999754 48888874 544444 6799996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=23.45 E-value=18 Score=23.24 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=10.0
Q ss_pred cCccccccccccC
Q 010464 344 LGQLSLKSFFHKR 356 (510)
Q Consensus 344 ~~Q~sL~sFF~~~ 356 (510)
.|-.+|-+||++=
T Consensus 7 ~g~~TLesFFK~L 19 (26)
T 2zvk_U 7 EGMQTLESFFKPL 19 (26)
T ss_pred cccccHHHHhccC
Confidence 3445999999984
Done!