Citrus Sinensis ID: 010465

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQGLI
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccHHHHHHcccccEEccEEEcccccccHHHHHHHcccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccHcccccEEEHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHcHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHcccc
MSSTLLEVTRAAHEEVERLERLVVKdlqtepnsnkdrlVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAAlggqtatgtnvFSSFYDRLKEIREyhrrhpsarvaVDASEDYENllkeeplvefsgeeayGRYLDLHELYNQYINSKFGKEIEYSAYldvfsrpheiprklKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQgwetegqenghvpaqhseldldYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFltkhtpldkldkkhfakgargkeqngvapatqevgnLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEReeeetqvdtesddeeqqiynplklpmgwdgkpipywlyklhglgqefkceicgnysywgRRAFERHFKEWRHqhgmrclgipntknfnEITSIEEAKELWKKIQERqggikwrpeleeeyedkegniynkktytdlqrqgli
msstllevtraaheeverlerlvvkdlqtepnsnkdrlvqshrvrnmidtitdtteRLIEIYADKDNARKDEIAalggqtatgtnvfSSFYDRLKEIREyhrrhpsarvavdasEDYENLLKeeplvefsgEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDvfsrpheiprklkmTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAakglksggtlQQRAERLfltkhtpldkldKKHFAKgargkeqngvapatqevgNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREeeetqvdtesddeeQQIYnplklpmgwdGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHgmrclgipntknFNEITSIEEAKELWKKIQerqggikwrpeleeeyedkegniynkktytdlqrqgli
MSSTLLEVTRAAHeeverlerlvvKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALtyeemeaereeeetqvdtesddeeqqIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQGLI
******************************************RVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRH***RVAVDA*EDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWET**************LDLDYYSTVEE*******************************F***********************************NLKDIALMEAKMKKLCDLLSETIERTI***********************************IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKW******************************
*SSTLLEVTRAAHEEVERLERLVVKDL**********LVQSHRVRNMIDTITDTTERLIEIYADKDNAR*****************FSSFYDRLKEIREYHRR**********************LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADF****************************LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERL****************************************IALMEAKMKKLCDLLSETIERTIQN*************************************LKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELW*******************YEDKEGNIYNKKTYTDLQRQGLI
MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTY**********************QQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYT********
**STLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWET*************ELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKH*****************************VGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEEE***********QQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQ***
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MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQGLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
Q9D554501 Splicing factor 3A subuni yes no 0.962 0.980 0.464 1e-119
Q12874501 Splicing factor 3A subuni yes no 0.962 0.980 0.464 1e-119
O46106503 Splicing factor 3A subuni yes no 0.968 0.982 0.437 1e-110
O59706492 Pre-mRNA-splicing factor yes no 0.917 0.951 0.337 2e-69
P19736530 Pre-mRNA-splicing factor yes no 0.362 0.349 0.378 9e-30
Q8K1J5448 Protein SDE2 homolog OS=M no no 0.158 0.180 0.419 2e-08
Q7T293467 Protein SDE2 homolog OS=D no no 0.131 0.143 0.477 3e-08
Q07G43468 Protein SDE2 homolog OS=X no no 0.141 0.153 0.486 8e-06
Q5BJN8448 Protein SDE2 homolog OS=R no no 0.158 0.180 0.432 0.0001
Q5RET9451 Protein SDE2 homolog OS=P no no 0.131 0.148 0.462 0.0009
>sp|Q9D554|SF3A3_MOUSE Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2 Back     alignment and function desciption
 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/515 (46%), Positives = 330/515 (64%), Gaps = 24/515 (4%)

Query: 4   TLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYA 63
           T+LE  R  HEE ERL  ++ K++ T+ ++ +D++   HR R M D   + +  L ++Y 
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLK- 122
           DKD  RK+E+ A+     +G N F+ FY+RLK+I+E+HR+HP+  + V  S ++E LLK 
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPN-EICVPMSVEFEELLKA 116

Query: 123 -EEP------LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRK 175
            E P      LVEF+ EE YGRYLDLH+ Y +YIN K  ++++Y  YL +F +  +IP++
Sbjct: 117 RENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKE 176

Query: 176 LKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE 235
            K   +Y+ Y+E LLEYL  +  R +PLQD + +F K+  DFE++W   T  GW  E   
Sbjct: 177 RK-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSS 235

Query: 236 NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPL 295
                  H  LDL  +S+ EEL  +G +RLK  L A GLK GGTL++RA+RLF TK   L
Sbjct: 236 ALTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 293

Query: 296 DKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQK 355
           + LD   FAK  + K   G    T+     KDIA +EA++ +  ++L E  + T +NVQ+
Sbjct: 294 ESLDTSLFAKNPKSK---GTKRDTERN---KDIAFLEAQIYEYVEILGEQRQLTHENVQR 347

Query: 356 KQALTYEEMEAEREEEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEF 415
           KQA T  E   E EEE+       D+E + IYNP  LP+GWDGKPIPYWLYKLHGL   +
Sbjct: 348 KQART-GEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINY 406

Query: 416 KCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQ 475
            CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW K++ ++
Sbjct: 407 NCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQK 466

Query: 476 GGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQGLI 510
              +W+P+ EEEYED  GN+ NKKTY DL+RQGL+
Sbjct: 467 ASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501
Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Mus musculus (taxid: 10090)
>sp|Q12874|SF3A3_HUMAN Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 Back     alignment and function description
>sp|O46106|NOI_DROME Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1 Back     alignment and function description
>sp|O59706|SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1 Back     alignment and function description
>sp|P19736|PRP9_YEAST Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1 Back     alignment and function description
>sp|Q8K1J5|SDE2_MOUSE Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1 Back     alignment and function description
>sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 Back     alignment and function description
>sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 Back     alignment and function description
>sp|Q5BJN8|SDE2_RAT Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=2 SV=2 Back     alignment and function description
>sp|Q5RET9|SDE2_PONAB Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
357463887508 Splicing factor 3a [Medicago truncatula] 0.996 1.0 0.825 0.0
224118264509 predicted protein [Populus trichocarpa] 0.998 1.0 0.803 0.0
356509273509 PREDICTED: splicing factor 3A subunit 3- 0.998 1.0 0.835 0.0
449455942508 PREDICTED: splicing factor 3A subunit 3- 0.996 1.0 0.811 0.0
356516045509 PREDICTED: splicing factor 3A subunit 3- 0.998 1.0 0.825 0.0
359490792509 PREDICTED: splicing factor 3A subunit 3- 0.998 1.0 0.809 0.0
224135217495 predicted protein [Populus trichocarpa] 0.970 1.0 0.792 0.0
297810717508 hypothetical protein ARALYDRAFT_487419 [ 0.996 1.0 0.772 0.0
42567684504 splicing factor 3A subunit 3 [Arabidopsi 0.988 1.0 0.764 0.0
255544982459 splicing factor 3a, putative [Ricinus co 0.886 0.984 0.814 0.0
>gi|357463887|ref|XP_003602225.1| Splicing factor 3a [Medicago truncatula] gi|355491273|gb|AES72476.1| Splicing factor 3a [Medicago truncatula] Back     alignment and taxonomy information
 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/510 (82%), Positives = 461/510 (90%), Gaps = 2/510 (0%)

Query: 1   MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIE 60
           MSSTLLE TRAAHEEVERLER++VKDLQ EP SNKDRL QSHRVRNMI TIT TTERLI+
Sbjct: 1   MSSTLLEATRAAHEEVERLERVIVKDLQNEPTSNKDRLYQSHRVRNMIVTITSTTERLID 60

Query: 61  IYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENL 120
           IY DKDNARKDEIAALGGQTATG N+FS+FYDRLKEIREYHR+HP+ARV VDA++D+E+L
Sbjct: 61  IYDDKDNARKDEIAALGGQTATGINLFSAFYDRLKEIREYHRKHPAARV-VDANDDFEDL 119

Query: 121 LKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTR 180
           LKEEP +EFSGEEA+GRYLD++ELY QY+NSKFG+ IEYSAYLD+FS   +IPRK+K TR
Sbjct: 120 LKEEPKIEFSGEEAFGRYLDINELYQQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKTTR 179

Query: 181 QYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVP 240
           QYREY++ LL+YL  FF RTEPLQDLDRIFSKV  +F E W T  + GWE   QENGHVP
Sbjct: 180 QYREYLKNLLQYLTSFFHRTEPLQDLDRIFSKVTTEFNENWATGRVLGWENVNQENGHVP 239

Query: 241 AQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDK 300
           AQH+ +DLDYYSTVEELMEVG ERLKE LAA GLK+GGT+QQRAERLFLTKHTPL+ LDK
Sbjct: 240 AQHTAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEMLDK 299

Query: 301 KHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALT 360
           KHFAKGARG E+NGVA A Q+ GNLK+IALMEAKM KLCDLL ETI RT  N+ KKQALT
Sbjct: 300 KHFAKGARGSEKNGVAAAPQD-GNLKEIALMEAKMNKLCDLLDETITRTKDNIVKKQALT 358

Query: 361 YEEMEAEREEEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC 420
           YEE+EAEREEEETQ D+ES+D+EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC
Sbjct: 359 YEEIEAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC 418

Query: 421 GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKW 480
           GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQ+RQG  KW
Sbjct: 419 GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKW 478

Query: 481 RPELEEEYEDKEGNIYNKKTYTDLQRQGLI 510
           RP+LEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 479 RPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118264|ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|222858447|gb|EEE95994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509273|ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449455942|ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like [Cucumis sativus] gi|449507630|ref|XP_004163087.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3A subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516045|ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359490792|ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like [Vitis vinifera] gi|302144037|emb|CBI23142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135217|ref|XP_002322012.1| predicted protein [Populus trichocarpa] gi|222869008|gb|EEF06139.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297810717|ref|XP_002873242.1| hypothetical protein ARALYDRAFT_487419 [Arabidopsis lyrata subsp. lyrata] gi|297319079|gb|EFH49501.1| hypothetical protein ARALYDRAFT_487419 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567684|ref|NP_196234.3| splicing factor 3A subunit 3 [Arabidopsis thaliana] gi|9759314|dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana] gi|14532640|gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana] gi|21281056|gb|AAM44910.1| putative splicing factor 3a protein [Arabidopsis thaliana] gi|332003594|gb|AED90977.1| splicing factor 3A subunit 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255544982|ref|XP_002513552.1| splicing factor 3a, putative [Ricinus communis] gi|223547460|gb|EEF48955.1| splicing factor 3a, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2152855504 ATO "ATROPOS" [Arabidopsis tha 0.988 1.0 0.711 7e-196
MGI|MGI:1922312501 Sf3a3 "splicing factor 3a, sub 0.960 0.978 0.443 1.4e-112
UNIPROTKB|Q4KLI7501 Sf3a3 "Protein Sf3a3" [Rattus 0.960 0.978 0.443 1.4e-112
UNIPROTKB|Q12874501 SF3A3 "Splicing factor 3A subu 0.960 0.978 0.443 1.8e-112
UNIPROTKB|E2QXU5501 SF3A3 "Uncharacterized protein 0.960 0.978 0.441 7.6e-112
UNIPROTKB|F1SV40501 SF3A3 "Uncharacterized protein 0.960 0.978 0.441 7.6e-112
UNIPROTKB|Q3SWY7501 SF3A3 "Splicing factor 3a, sub 0.960 0.978 0.441 1.2e-111
UNIPROTKB|Q5F387501 SF3A3 "Uncharacterized protein 0.960 0.978 0.436 1.1e-110
ZFIN|ZDB-GENE-040908-1501 sf3a3 "splicing factor 3a, sub 0.960 0.978 0.432 1.6e-109
FB|FBgn0014366503 noi "noisette" [Drosophila mel 0.968 0.982 0.418 3.8e-101
TAIR|locus:2152855 ATO "ATROPOS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1897 (672.8 bits), Expect = 7.0e-196, P = 7.0e-196
 Identities = 363/510 (71%), Positives = 411/510 (80%)

Query:     1 MSSTLLEVTRAAHXXXXXXXXXXXKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIE 60
             MSSTLLE TR+ H           +DLQ EP S+KDRLVQ HRVR+MI++I  TTE+L+E
Sbjct:     1 MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query:    61 IYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENL 120
              Y DKD A  DEIAALGGQTATGTNVFS FYDRLKEIREYH+RHPS R+ VDA+EDYE  
Sbjct:    61 TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRL-VDANEDYEAR 119

Query:   121 LKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTR 180
             LKEEP++ FSGEE  GRYLDLH++YNQYINSKFG+ +EYSAYLDVFS+P +IPRKLK++R
Sbjct:   120 LKEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSR 179

Query:   181 QYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVP 240
             QY +Y+E LLEYL+YFFQRTEPLQDLDRI SKV +DFEEQ+    +     EG +N  +P
Sbjct:   180 QYMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIV-----EGLDNELIP 234

Query:   241 AQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDK 300
             +QH+ +DLDYYSTVEEL++VG E+LKE L A GLK GGT QQRAERLFLTKHTPL+KLDK
Sbjct:   235 SQHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDK 294

Query:   301 KHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALX 360
             KHFA+     +QNG A +T E  N K+IAL EAK+KKLC+LL ETIERT QN+ KKQ+L 
Sbjct:   295 KHFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLT 354

Query:   361 XXXXXXXXXXXXXXXXXXXXXXXXXIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC 420
                                      IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEIC
Sbjct:   355 YEEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEIC 414

Query:   421 GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKW 480
             GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWK+IQERQG  KW
Sbjct:   415 GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKW 474

Query:   481 RPELEEEYEDKEGNIYNKKTYTDLQRQGLI 510
             RPELEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct:   475 RPELEEEYEDREGNIYNKKTYSDLQRQGLI 504
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0045694 "regulation of embryo sac egg cell differentiation" evidence=IMP
GO:0000741 "karyogamy" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009561 "megagametogenesis" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
MGI|MGI:1922312 Sf3a3 "splicing factor 3a, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLI7 Sf3a3 "Protein Sf3a3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q12874 SF3A3 "Splicing factor 3A subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXU5 SF3A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV40 SF3A3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWY7 SF3A3 "Splicing factor 3a, subunit 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F387 SF3A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040908-1 sf3a3 "splicing factor 3a, subunit 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0014366 noi "noisette" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12874SF3A3_HUMANNo assigned EC number0.46400.96270.9800yesno
O59706SAP61_SCHPONo assigned EC number0.33700.91760.9512yesno
O46106NOI_DROMENo assigned EC number0.43770.96860.9821yesno
Q9D554SF3A3_MOUSENo assigned EC number0.46400.96270.9800yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
pfam11931187 pfam11931, DUF3449, Domain of unknown function (DU 4e-98
COG5188470 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA 9e-72
pfam1329760 pfam13297, Telomere_Sde2_2, Telomere stability C-t 3e-27
pfam1210827 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 2e-07
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449) Back     alignment and domain information 
 Score =  293 bits (753), Expect = 4e-98
 Identities = 114/187 (60%), Positives = 146/187 (78%), Gaps = 6/187 (3%)

Query: 329 ALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAERE------EEETQVDTESDDE 382
           A +E K++KL +LL +  E TI+NV++KQALT EE +A  +       E+   D   DDE
Sbjct: 1   ARLEFKIEKLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDE 60

Query: 383 EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQH 442
           E+ IYNPL LP+GWDGKPIPYWLYKLHGLG+EFKCEICGN SY GR+AFE+HF EWRH +
Sbjct: 61  EEPIYNPLNLPLGWDGKPIPYWLYKLHGLGKEFKCEICGNTSYKGRKAFEKHFSEWRHAY 120

Query: 443 GMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGNIYNKKTYT 502
           G++CLGIPNT++F EITSIEEA ELW+K++++    ++ PE EEE ED+EGN+ +KKTY 
Sbjct: 121 GLKCLGIPNTRHFKEITSIEEALELWEKLKKQTKRKRFEPENEEEVEDEEGNVMSKKTYE 180

Query: 503 DLQRQGL 509
           DL+RQGL
Sbjct: 181 DLKRQGL 187

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG. The domain carries a zinc-finger domain of the C2H2-type. Length = 187
>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|205477 pfam13297, Telomere_Sde2_2, Telomere stability C-terminal Back     alignment and domain information
>gnl|CDD|192937 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
KOG2636497 consensus Splicing factor 3a, subunit 3 [RNA proce 100.0
COG5188470 PRP9 Splicing factor 3a, subunit 3 [RNA processing 100.0
PF11931196 DUF3449: Domain of unknown function (DUF3449); Int 100.0
PF1329760 Telomere_Sde2_2: Telomere stability C-terminal 99.68
KOG2827322 consensus Uncharacterized conserved protein [Funct 98.87
PF1210828 SF3a60_bindingd: Splicing factor SF3a60 binding do 98.85
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 94.54
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 90.3
PF1389424 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP 88.27
PF0009623 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 87.63
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 87.11
PF0639736 Desulfoferrod_N: Desulfoferrodoxin, N-terminal dom 83.94
PF09943101 DUF2175: Uncharacterized protein conserved in arch 80.8
smart0035526 ZnF_C2H2 zinc finger. 80.3
PLN02748468 tRNA dimethylallyltransferase 80.01
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-158  Score=1209.65  Aligned_cols=489  Identities=53%  Similarity=0.890  Sum_probs=452.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHccCCCCC
Q 010465            3 STLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTAT   82 (510)
Q Consensus         3 ~~~LE~~R~~hEeiErlE~ai~~~~~~~p~~~k~~l~q~h~i~~~ld~~~~~~~~L~~~y~D~dg~r~~Ei~~l~g~~~~   82 (510)
                      +++||+||++|||+|||+++||++++++|.+.|++|.+.|+|+.|++++.+.+.+|+++|.|+||+|+.||.+|+|    
T Consensus         1 etlLEt~R~lhEE~ERl~~~ive~~~~~p~~~k~ri~~~hrv~~~~~~~~~ss~~l~~~yedkdg~r~~e~~~l~g----   76 (497)
T KOG2636|consen    1 ETLLETQRRLHEEMERLENAIVEREQANPPGKKDRINSEHRVRSFLERYRSSSIKLRKLYEDKDGLRKREIAALSG----   76 (497)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhHHhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHhcC----
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             CCchHHHHHHHHHHHHHhhhhCCCCccccCchhhHHh----hhcc----CCCCcccccccCccccchHHHHHHHhcCCCC
Q 010465           83 GTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYEN----LLKE----EPLVEFSGEEAYGRYLDLHELYNQYINSKFG  154 (510)
Q Consensus        83 ~~~~f~~Fy~~l~~Ike~h~~~p~~~~~~~~~~~~~~----~~~~----~~~~~Fs~eE~yGryLDL~~~y~~ylNl~~~  154 (510)
                       +|+|.+||++|++|++||+++|++.. ++....+..    ...+    .+.+.|||+|+||||||||.+|.+||||+.+
T Consensus        77 -~n~f~EfY~rLk~I~~~hk~~p~e~~-~p~~v~~~~~~e~~~~~~~~~~~l~~Fs~ee~yGrfldL~d~y~kyinl~~~  154 (497)
T KOG2636|consen   77 -PNDFAEFYKRLKEINEFHKKHPDEKD-EPKSVRFLELYEARLSPEDENEVLVEFSGEEGYGRFLDLHDCYRKYINLKNV  154 (497)
T ss_pred             -chhHHHHHHHHHHHhHHHhcCccccc-cchhHHHHHHHHhhcCccccchhhHhhcccccccccccHHHHHHHHhhhhhh
Confidence             79999999999999999999998633 555544433    3333    2557899999999999999999999999999


Q ss_pred             CccchhHHhhhhcCCCCCccccccchhHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhhCCCCCCcccCc
Q 010465          155 KEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQ  234 (510)
Q Consensus       155 ~~i~Yl~YL~~f~~f~~ip~~~k~~~~Y~~Yl~~L~~YL~~F~~R~~PL~d~~~~~~~~~~~Fe~~w~~g~~~gW~~~~~  234 (510)
                      .+++|++||.+|++|.+||+ .+++..|..||+.|.+||.+|++|++||.|++++++.+.++|+.+|.+|.+|||....+
T Consensus       155 ~r~~Y~~yL~~fd~~~~ip~-~~k~~~Y~~Yi~~L~eYL~~F~~r~~Pl~d~~~ll~~~~~~f~~~~~aG~lpg~~~~et  233 (497)
T KOG2636|consen  155 ERVDYLEYLKNFDQLDDIPK-EKKNREYLNYIEELNEYLVSFIDRTEPLLDLDKLLAKVPKEFERAWAAGTLPGWKYKET  233 (497)
T ss_pred             hhhhHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHHHHhcccchhhHhHhcchhhHHHHHHHhCCCCCcccccc
Confidence            99999999999999999999 67799999999999999999999999999999999999999999999999999985322


Q ss_pred             cCCCCCCccCccCccccchHHHHHhhhhhhhhHHHHhccccCCCchHHHHHHhhhhcCCCccchhhhhhhccCCCCCCCC
Q 010465          235 ENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNG  314 (510)
Q Consensus       235 ~~~~~~~~~~~~d~~~~~s~ekl~~~g~~~lke~l~~~gLk~ggtlk~rA~rlf~~k~~~~e~~~~~~~ak~~~~~~~~~  314 (510)
                      ..+      -.++++..+++++|+++||+||++++.++|++||||+++||+|+|+++|.+++.+++++++++.+.+    
T Consensus       234 ~~~------~~~dl~~~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~----  303 (497)
T KOG2636|consen  234 FSA------KALDLSGASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLDTKLFAKNPSKK----  303 (497)
T ss_pred             ccc------cccccchhhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhhhhhhccCcccc----
Confidence            111      1368899999999999999999999999999999999999999999999999999999999876654    


Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCchhhhhccCCCCCCC
Q 010465          315 VAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEEETQVDTESDDEEQQIYNPLKLPM  394 (510)
Q Consensus       315 ~~~~~~~~~~~k~ia~~E~~i~~l~~~L~~~~~~T~~~veRK~a~T~~Ere~E~e~~~~~~~~e~~d~e~~iyNplnLPL  394 (510)
                        +........++||+.|++|.+++.+|+++|.+|++||.|||++|+.|++.|.+++.+..+++++|+++.||||+||||
T Consensus       304 --~~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e~E~E~~eq~~~~~e~~~de~~~~ynp~~lPL  381 (497)
T KOG2636|consen  304 --GHRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEEREEEEEEQSDSDEESDDDEEELIYNPKNLPL  381 (497)
T ss_pred             --hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccchhhccCCcccCCC
Confidence              123345678999999999999999999999999999999999999999887766655555555666789999999999


Q ss_pred             CCCCCchhHHHHHHhcCCCcccceeecCCcccchhhhhhhcchhhhhhcccccCCCCCcCccccccHHHHHHHHHHHHHh
Q 010465          395 GWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQER  474 (510)
Q Consensus       395 GwDGkPIPyWLYKLhGL~~ey~CEICGN~~Y~GRkaFekHF~E~RH~~GmrcLGIpnt~~F~~IT~I~dA~~Lw~klk~~  474 (510)
                      ||||||||||||||||||++|+||||||+||||||||+|||+||||+|||||||||||+||++||+|+||+.||+|||.+
T Consensus       382 GwDGkPiPyWLyKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCLGIpnt~~F~~IT~I~eA~~LW~k~k~q  461 (497)
T KOG2636|consen  382 GWDGKPIPYWLYKLHGLDIEYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCLGIPNTSVFKGITKIEEALELWKKMKEQ  461 (497)
T ss_pred             CCCCCcCchHHHhhcCCCcccceeeccCccccCcHHHHHHhHHHHHhhcceecCCCCcHHhcccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCceeeccCCCccchhhhHHHhhccCC
Q 010465          475 QGGIKWRPELEEEYEDKEGNIYNKKTYTDLQRQGLI  510 (510)
Q Consensus       475 ~~~~~~~~~~~eE~ED~~GNVm~kK~YeDLkrQGLl  510 (510)
                      +....|.++.++||||++|||||+|||+||||||||
T Consensus       462 ~~~~kw~~~~eeE~ED~eGNV~~kKtYeDLKrQGLl  497 (497)
T KOG2636|consen  462 SQSEKWPPDLEEEYEDEEGNVMNKKTYEDLKRQGLL  497 (497)
T ss_pred             hhhccCCchhHhhhhccccCcccHHhHHHHHHccCC
Confidence            999999999999999999999999999999999997

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal Back     alignment and domain information
>KOG2827 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A Back     alignment and domain information
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein Back     alignment and domain information
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function Back     alignment and domain information
>smart00355 ZnF_C2H2 zinc finger Back     alignment and domain information
>PLN02748 tRNA dimethylallyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
4dgw_A402 PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A 9e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
2dt7_A38 Splicing factor 3A subunit 3; structure genomics, 4e-05
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402 Back     alignment and structure
 Score =  190 bits (484), Expect = 9e-56
 Identities = 63/435 (14%), Positives = 128/435 (29%), Gaps = 112/435 (25%)

Query: 1   MSSTLLEVTRAAHEEVERLERLVVKDLQTEPN---------------------------- 32
           +   LLE  R+  EE+E +E  + + +Q  P                             
Sbjct: 12  LEMNLLETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENK 71

Query: 33  ---------SNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEI-----AALGG 78
                      K  ++Q H +   +    +  +   +I   ++    D+        L  
Sbjct: 72  IYKFKKVKRKRKQIILQQHEINIFLRDYQEKQQTFNKINRPEETQEDDKDLPNFERKLQQ 131

Query: 79  QTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPL-VEFSGEEAYGR 137
                 N   +F   +   ++ +    S+      +    +  ++  L   F+ +E YG 
Sbjct: 132 LEKELKNEDENFELDINSKKDKYALFSSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGE 191

Query: 138 YLDLHELYNQYINSKFGKEIEYSAYLDVF------SRPHEIPRKLKMTRQYREYIEKLLE 191
           Y++L + ++ ++N     +     +LD+        +    P   +   +Y  ++ KL +
Sbjct: 192 YMELEQFHSLWLNVIKRGDCSLLQFLDILELFLDDEKYLLTPPMDRKNDRYMAFLLKLSK 251

Query: 192 YLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYY 251
           Y+  FF ++  L D   + + + +DFE  +   +L+                        
Sbjct: 252 YVETFFFKSYALLDAAAVENLIKSDFEHSYCRGSLRSEA--------------------- 290

Query: 252 STVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKE 311
                                     G       R F T       L  K   K     E
Sbjct: 291 -------------------------KGIYCPFCSRWFKTSSVFESHLVGKIHKK----NE 321

Query: 312 QNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEE--MEAERE 369
                    E         +   +K L D  S T       V++K A T  E   E +  
Sbjct: 322 SKRRNFVYSE-------YKLHRYLKYLNDEFSRTRS----FVERKLAFTANERMAEMDIL 370

Query: 370 EEETQVDTESDDEEQ 384
            ++ +       E++
Sbjct: 371 TQKYEAPAYDSTEKE 385
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
4dgw_A402 PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A 100.0
2dt7_A38 Splicing factor 3A subunit 3; structure genomics, 98.9
1zr9_A124 Zinc finger protein 593; DNA binding, structural g 97.44
2lvu_A26 Zinc finger and BTB domain-containing protein 17; 82.81
1znf_A27 31ST zinc finger from XFIN; zinc finger DNA bindin 81.98
2kvh_A27 Zinc finger and BTB domain-containing protein 32; 81.81
1ard_A29 Yeast transcription factor ADR1; transcription reg 81.48
2kvf_A28 Zinc finger and BTB domain-containing protein 32; 80.66
1rik_A29 E6APC1 peptide; E6-binding domain, zinc finger, hu 80.25
2lvr_A30 Zinc finger and BTB domain-containing protein 17; 80.42
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.5e-73  Score=591.56  Aligned_cols=294  Identities=19%  Similarity=0.296  Sum_probs=249.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------------------------------ChhHHHHHHHH
Q 010465            1 MSSTLLEVTRAAHEEVERLERLVVKDLQTEPN-------------------------------------SNKDRLVQSHR   43 (510)
Q Consensus         1 Ms~~~LE~~R~~hEeiErlE~ai~~~~~~~p~-------------------------------------~~k~~l~q~h~   43 (510)
                      |+  +||+||++||||||||+|||+||+++|.                                     |+|++|+|||+
T Consensus        14 M~--~LE~qR~~hEElEriE~ais~r~~rnP~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~kk~krt~k~~l~qqHe   91 (402)
T 4dgw_A           14 MN--LLETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHE   91 (402)
T ss_dssp             CC--HHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHTTSTTCCCCCHHHHHHTBSSSCBCCCCCHHHHHHHHHH
T ss_pred             eh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchhhccccccccccccccccchhhhhccccccHHHHHHHHHH
Confidence            55  9999999999999999999999999998                                     78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHccCCCCCCCchHHHHHHHHHHHHHhhhhCCCC---ccccCchhhHHhh
Q 010465           44 VRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSA---RVAVDASEDYENL  120 (510)
Q Consensus        44 i~~~ld~~~~~~~~L~~~y~D~dg~r~~Ei~~l~g~~~~~~~~f~~Fy~~l~~Ike~h~~~p~~---~~~~~~~~~~~~~  120 (510)
                      |+.|||+|++++++|+++|+|      +||.  ++     ++.|++||++|++|++||+++|+.   ++ ......|.+.
T Consensus        92 i~~fld~~~~~sk~L~~~y~d------~ei~--~~-----~~~f~~Fy~~L~~Ike~~~~~~~~~~~pi-~~~~~~y~~~  157 (402)
T 4dgw_A           92 INIFLRDYQEKQQTFNKINRP------EETQ--ED-----DKDLPNFERKLQQLEKELKNEDENFELDI-NSKKDKYALF  157 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHTTSSCCCCCCCC-CSHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhH------Hhhc--CC-----CchHHHHHHHHHHHHHhhhccccccccch-hhHHHHHHhh
Confidence            999999999999999999966      5664  23     588999999999999999996553   23 3334445432


Q ss_pred             hc---------------cC--CCCcccccccCccccchHHHHHHHhcCCCCCccchhHHhhhhcCCCCC------ccccc
Q 010465          121 LK---------------EE--PLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEI------PRKLK  177 (510)
Q Consensus       121 ~~---------------~~--~~~~Fs~eE~yGryLDL~~~y~~ylNl~~~~~i~Yl~YL~~f~~f~~i------p~~~k  177 (510)
                      ..               ..  +++.|||||+||||||||.||.+||||+++++|+|++||++|++|.+|      |+++|
T Consensus       158 ~~~~~~~k~~~iLS~~~~~l~i~~~FSgEE~yGryLDL~~~y~~ylNl~~~~~l~Yl~YL~~F~~f~di~~~~~~p~~~k  237 (402)
T 4dgw_A          158 SSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGEYMELEQFHSLWLNVIKRGDCSLLQFLDILELFLDDEKYLLTPPMDR  237 (402)
T ss_dssp             STTCSSSSSSCCSCGGGTTCCGGGTSCTTTGGGTCCCCHHHHHHHHHHHTSSCCCHHHHHHHHHGGGSSSHHHHSCSSCT
T ss_pred             ccccccccccccccchhcccccccccCcchhcCceecHHHHHHHHhCcCccccCcHHHHHHHHHHhccchhcccCChhhh
Confidence            21               11  134699999999999999999999999889999999999999999998      77789


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH-HHhhCCCCCCcccCccCCCCCCccCccCccccchHHH
Q 010465          178 MTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEE-QWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEE  256 (510)
Q Consensus       178 ~~~~Y~~Yl~~L~~YL~~F~~R~~PL~d~~~~~~~~~~~Fe~-~w~~g~~~gW~~~~~~~~~~~~~~~~~d~~~~~s~ek  256 (510)
                      .+.+|++||++|++||++||.||+||+|+++++.+++++|++ +|++    ||+..             ....||.+|+|
T Consensus       238 ~~~~Y~~YL~~L~~YL~sF~~Rt~PL~dld~~~~~~~~eFE~~~w~~----~~~~~-------------~~~l~C~~c~K  300 (402)
T 4dgw_A          238 KNDRYMAFLLKLSKYVETFFFKSYALLDAAAVENLIKSDFEHSYCRG----SLRSE-------------AKGIYCPFCSR  300 (402)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTGGGT----CCEET-------------TTEECBTTTTB
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHhhc----CCcCC-------------CcCeeehhhhh
Confidence            999999999999999999999999999999999999999999 9995    47531             12389999999


Q ss_pred             HHhhhhhhhhHHHHhccccCCCchHHHHHHhhhhcCCCccchhhhhhhccCCCCCCCCCCCcccccchhhHHHHHHHHHH
Q 010465          257 LMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMK  336 (510)
Q Consensus       257 l~~~g~~~lke~l~~~gLk~ggtlk~rA~rlf~~k~~~~e~~~~~~~ak~~~~~~~~~~~~~~~~~~~~k~ia~~E~~i~  336 (510)
                      +|+      +++|+..||+|++|.++.+.                                       .|.||++|++|+
T Consensus       301 ~Fs------~~~v~~~hL~GKkh~K~~~~---------------------------------------~k~iA~~E~~I~  335 (402)
T 4dgw_A          301 WFK------TSSVFESHLVGKIHKKNESK---------------------------------------RRNFVYSEYKLH  335 (402)
T ss_dssp             CBS------SHHHHHTTSSSHHHHHHHHH---------------------------------------SHHHHHHHHHHH
T ss_pred             hhc------cccccHHHhcccccchhHHH---------------------------------------HHHHHHHHHHHH
Confidence            999      99999999999998885322                                       478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 010465          337 KLCDLLSETIERTIQNVQKKQALTYEEMEAEREEEE  372 (510)
Q Consensus       337 ~l~~~L~~~~~~T~~~veRK~a~T~~Ere~E~e~~~  372 (510)
                      +|+++|+++|++|++|||||||||++||++|++...
T Consensus       336 ~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~E~e~l~  371 (402)
T 4dgw_A          336 RYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILT  371 (402)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999999999999999999999988755
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Back     alignment and structure
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens} Back     alignment and structure
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1 Back     alignment and structure
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Back     alignment and structure
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A Back     alignment and structure
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
d1dxga_36 Desulforedoxin {Desulfovibrio gigas [TaxId: 879]} 92.43
d1dfxa236 Desulfoferrodoxin N-terminal domain {Desulfovibrio 91.56
d1vzia237 Desulfoferrodoxin N-terminal domain {Desulfoarculu 91.36
d2epsa139 PATZ1 {Human (Homo sapiens) [TaxId: 9606]} 82.4
d1zr9a167 Zinc finger protein 593, ZNF593 {Human (Homo sapie 81.72
d1srka_35 Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc 80.89
d1a1ia328 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 80.4
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=92.43  E-value=0.01  Score=39.70  Aligned_cols=13  Identities=46%  Similarity=1.242  Sum_probs=10.9

Q ss_pred             CCcccceeecCCc
Q 010465          412 GQEFKCEICGNYS  424 (510)
Q Consensus       412 ~~ey~CEICGN~~  424 (510)
                      +.-|+|++|||.+
T Consensus         4 ~evYkC~~CGNiV   16 (36)
T d1dxga_           4 GDVYKCELCGQVV   16 (36)
T ss_dssp             TCEEECTTTCCEE
T ss_pred             ccEEEeccCCcEE
Confidence            4579999999975
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]} Back     information, alignment and structure
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure