BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010466
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/483 (71%), Positives = 403/483 (83%), Gaps = 10/483 (2%)
Query: 32 RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
RI LKKR D N+RVA L E + + L + DIVALKNYM+AQYF
Sbjct: 2 RIALKKRPIDRNSRVATGLSGGEEQPLLSGANP------LRSEEEGDIVALKNYMNAQYF 55
Query: 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIH 151
GEIG+GTPPQ FTVIFDTGSSNLWVPS+KCYFSIACY HS+Y++G SSTYKKNGK A I
Sbjct: 56 GEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQ 115
Query: 152 YGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGKAV 207
YGTG+I+G+FSED V +GDLVVKDQ AT+EP +TFL+AKFDGILGLGF+EISVGKAV
Sbjct: 116 YGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAV 175
Query: 208 PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQF 267
PVWY M+ QGLV++PVFSFW NR+ DE EGGEI+FGGMDP HY GEHTYVPVTQKGYWQF
Sbjct: 176 PVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQF 235
Query: 268 DMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQ 327
DMGDV++ G++TGFCAGGCAAIADSGTSLLAGPT IIT++N IGA G+VSQECK +VSQ
Sbjct: 236 DMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQ 295
Query: 328 YGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTC 387
YG++I+++LLA+ +P+KICSQ+GLCTFDG+RGVS GI SVV + +++G D MCS C
Sbjct: 296 YGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSAC 355
Query: 388 EMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIF 447
EMAVVWMQNQL QN+TQ+ IL+YVN+LC+RLPSPMGESAVDC L S+P + FTIGGK F
Sbjct: 356 EMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKF 415
Query: 448 DLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 507
L P++YILKVGEG AAQCISGF+A+D+ PPRGPLWILGDVFMGPYHTVFDY +R+GFA
Sbjct: 416 ALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFA 475
Query: 508 EAA 510
+AA
Sbjct: 476 KAA 478
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/239 (68%), Positives = 184/239 (76%), Gaps = 8/239 (3%)
Query: 79 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRS 138
+VAL N D YFGEIGIGTPPQ FTVIFDTGSS LWVPSSKC S AC HS Y S S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGIL 194
STYK+NG I YGTG+I+GFFS+D V IGDLVVK+Q AT E FL FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 195 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEH 254
GL FQ ISV PVWYNM+NQGLV E FSFW NRN DEEEGGE+VFGG+DP+H++G+H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 255 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
TYVPVT + YWQF +GDV+I ++TGFCA GC A ADSGTSLL+GPT I+TQ+NHAIGA
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 181/288 (62%), Gaps = 22/288 (7%)
Query: 32 RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
R LK+R D+ ARL G + +++ +L GN S V L NYMD QY+
Sbjct: 20 RESLKERGVDM-----ARL----GPEWSQPMKRLTL-GNTTSS-----VILTNYMDTQYY 64
Query: 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADI 150
GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + SS+YK NG +
Sbjct: 65 GEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTL 124
Query: 151 HYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILGLGFQEISVGKAV 207
Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G+GF E ++G+
Sbjct: 125 RYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 184
Query: 208 PVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGEHTYVPVTQKGYW 265
P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G Y+ + + G W
Sbjct: 185 PIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVW 244
Query: 266 QFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Q M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 245 QIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 291
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 249 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 299
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 300 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 350
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 351 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 382
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 7/240 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 129
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGE 253
+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 130 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN 189
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 190 FHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 248
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 206 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 256
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 257 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 307
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 308 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 339
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 7/240 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 6 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 65
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 66 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 125
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGE 253
+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 126 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN 185
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 186 FHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 244
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 202 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 252
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 253 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 303
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 304 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 335
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 7/240 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 129
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGE 253
+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 130 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN 189
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 190 FHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 248
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 206 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 256
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 257 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 307
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 308 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 339
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 7/240 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 7 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 66
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 67 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 126
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGE 253
+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 127 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN 186
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 187 FHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 245
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 203 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 253
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 254 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 304
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 305 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 336
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 234 bits (597), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 7/240 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 122
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGE 253
+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 123 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN 182
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 183 FHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 241
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 199 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 249
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 250 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 300
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 301 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 332
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 159/238 (66%), Gaps = 8/238 (3%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 129
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHT 255
+GF E ++G+ P++ N+++QG++ E VFSF++NR++ GG+IV GG DP HY+G
Sbjct: 130 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDS---LGGQIVLGGSDPQHYEGNFH 186
Query: 256 YVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 187 YINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 243
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 201 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 251
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 252 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 302
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 303 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 334
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 165/263 (62%), Gaps = 14/263 (5%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L NY+D +YFG I IG+PPQNFTVIFDTGSSNLWVPS C S AC HS+++ +SSTY
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ G+S I YGTG++SG D V + L V Q + EP TF+ A+FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ ++VG PV+ NM+ Q LV+ P+FS + + N + G E++FGG D H+ G +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIV 317
PVT++ YWQ + ++ + G T FC+ GC AI D+GTSL+ GP+ I Q+ +AIGA
Sbjct: 196 PVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGA---- 250
Query: 318 SQECKAVVSQYGEEIINMLLAKD 340
V +Y E N+ + D
Sbjct: 251 ----APVDGEYAVECANLNVMPD 269
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE AV+C+ L+ +P V+FTI G + L+P Y L C SGF LD+ PP GPL
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPL 314
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
WILGDVF+ +++VFD N RVG A A
Sbjct: 315 WILGDVFIRQFYSVFDRGNNRVGLAPA 341
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 12/252 (4%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILG 195
+YK NG I YGTG++ G+ S+D + IGDL + Q AT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 254
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 255 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 313
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 314 ---TGIVSQECK 322
TG + +C
Sbjct: 242 KGSTGQYTLDCN 253
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G+ +DC+ +LP + F G F + P Y L+V + CIS + +D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
I+GD F+ Y++++D N VG A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 12/252 (4%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILG 195
+YK NG I YGTG++ G+ S+D + IGDL + Q AT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 254
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 255 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 313
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 314 ---TGIVSQECK 322
TG + +C
Sbjct: 242 KGWTGQYTLDCN 253
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G+ +DC+ +LP + F G F + P Y L+V + CIS + +D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
I+GD F+ Y++++D N VG A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 12/252 (4%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILG 195
+YK NG I YGTG++ G+ S+D + IGDL + Q AT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 254
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 255 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 313
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 314 ---TGIVSQECK 322
TG + +C
Sbjct: 242 KGWTGQYTLDCN 253
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G+ +DC+ +LP + F G F + P Y L+V + CIS + +D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
I+GD F+ Y++++D N VG A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 6/238 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NY+++QY+GEIGIGTPPQ F VIFDTGS+NLWVPS+KC +AC HS Y S S
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+Y +NG IHYG+G + GF S+D V +G + V + T+ P + F+LA+FDG+LG
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVTQTFGEVTQLPLIPFMLAQFDGVLG 126
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHT 255
+GF +VG PV+ ++++QG++ E VFS ++NR GGE+V GG DP HY+G+
Sbjct: 127 MGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGP-HLLGGEVVLGGSDPQHYQGDFH 185
Query: 256 YVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
YV +++ WQ M V + G +T C GC + D+G+S ++ PT+ + + A+GA
Sbjct: 186 YVSLSKTDSWQITMKGVSV-GSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGA 242
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 422 MGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGP 481
+ E V CS++ +LP +SF +GG+ + L+ Y+L+ C A+D+ PP GP
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGP 306
Query: 482 LWILGDVFMGPYHTVFDYSNMRVGFAEA 509
+W+LG F+ ++T FD N R+GFA A
Sbjct: 307 VWVLGATFIRKFYTEFDRHNNRIGFALA 334
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 159/262 (60%), Gaps = 16/262 (6%)
Query: 85 YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN 144
YMDA YFGEI IGTPPQNF V+FDTGSSNLWVPS C S AC HS++ SSTY N
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 145 GKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQE 200
G++ + YG+G+++GFF D + + + V +Q + EP F+ A+FDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 201 ISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVT 260
+SV +A MV +G + PVFS + + N GG +VFGG+D Y G+ + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLS-NQQGSSGGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 261 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQE 320
Q+ YWQ + + +I GQ +G+C+ GC AI D+GTSLL P ++ + A GA QE
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE 241
Query: 321 CKAVVSQYGEEIINMLLAKDEP 342
+YG+ ++N ++ P
Sbjct: 242 -----DEYGQFLVNCNSIQNLP 258
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-P 481
G+ V+C+ + +LP ++F I G F L P YIL + C G ++ G P
Sbjct: 245 GQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILS----NNGYCTVGVEPTYLSSQNGQP 300
Query: 482 LWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
LWILGDVF+ Y++V+D N RVGFA AA
Sbjct: 301 LWILGDVFLRSYYSVYDLGNNRVGFATAA 329
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 12/253 (4%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTV+FDTGSSNLWVPS C S+AC H+++ SSTY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ ++ I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ NQGLV++ +FS + +AD++ G ++FGG+D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYL--SADDQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT--- 314
PVT +GYWQ + + ++G+ CA GC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENS 241
Query: 315 -GIVSQECKAVVS 326
G + C A+ S
Sbjct: 242 DGDMVVSCSAISS 254
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G+ V CS +SSLP + FTI G + + P YIL+ EG CISGF +++ G L
Sbjct: 243 GDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQ-SEG---SCISGFQGMNLPTESGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 12/253 (4%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTV+FDTGSSNLWVPS C S+AC H+++ SSTY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ ++ I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ NQGLV++ +FS + +AD++ G ++FGG+D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYL--SADDQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT--- 314
PVT +GYWQ + + ++G+ CA GC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENS 241
Query: 315 -GIVSQECKAVVS 326
G + C A+ S
Sbjct: 242 DGDMVVSCSAISS 254
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G+ V CS +SSLP + FTI G + + P YIL+ EG CISGF ++V G L
Sbjct: 243 GDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQ-SEG---SCISGFQGMNVPTESGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS ++SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 243 GEMVISCSSIASLPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 226
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 227 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 342
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 343 WILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 152/237 (64%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N ++ G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 298
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 299 WILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 8/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ + I YGTG+++G D V++G + +Q + EP A FDGILGL
Sbjct: 109 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 226
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 227 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE + CS + SLP + FTI G + L+P YIL+ D C SGF +DV G L
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGEL 342
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WILGDVF+ Y+TVFD +N +VG A A
Sbjct: 343 WILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 156/260 (60%), Gaps = 19/260 (7%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G+ V L NY+D+QYFG+I +GTPPQ FTV+FDTGSS+ WVPS C S AC H ++
Sbjct: 1 GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFD 59
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKF 190
+SST++ GK IHYGTG++ G D V + ++V Q +T+EP F A+F
Sbjct: 60 PRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEF 119
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILG+ + ++ ++PV+ NM+N+ LV + +FS + +RN E + G +DP +Y
Sbjct: 120 DGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQES---MLTLGAIDPSYY 176
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHA 310
G +VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I + A
Sbjct: 177 TGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQA 235
Query: 311 IGATGIVSQECKAVVSQYGE 330
IGAT +QYGE
Sbjct: 236 IGATQ----------NQYGE 245
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE +DC LS +P V F I GK++ LTP Y + D C SGF + +
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQK 295
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
WILGDVF+ Y++VFD +N VG A+A
Sbjct: 296 WILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 152/237 (64%), Gaps = 9/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L +Y+D+QYFG+I IGTPPQ FTV+FDTGSS+LWVPS C S C H ++ +SST+
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK-SNVCKNHHRFDPRKSSTF 63
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ GK IHYGTG++ GF D V + ++V +Q +T +P F ++FDGILGL
Sbjct: 64 RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLA 123
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ ++ +VPV+ NM+++ LV +FS + +RN +G + G +DP +Y G +V
Sbjct: 124 YPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNG---QGSMLTLGAIDPSYYTGSLHWV 180
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PVT + YWQF + V I+G C GGC AI D+GTS+L GP++ I ++ AIGAT
Sbjct: 181 PVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE V+C L S+P V F I G+ + L+P Y K D C SGF + L
Sbjct: 241 GEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK----DQGFCTSGFQGDN----NSEL 292
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
WILGDVF+ Y++VFD +N RVG A+A
Sbjct: 293 WILGDVFIREYYSVFDRANNRVGLAKA 319
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 156/260 (60%), Gaps = 19/260 (7%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G+ V L NY+D+QYFG+I +GTPPQ FTV+FDTGSS+ WVPS C S AC H ++
Sbjct: 1 GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFD 59
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKF 190
+SST++ GK IHYGTG++ G D V + ++V Q +T+EP F A+F
Sbjct: 60 PRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEF 119
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILG+ + ++ ++PV+ NM+N+ LV + +FS + +RN E + G +DP +Y
Sbjct: 120 DGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQES---MLTLGAIDPSYY 176
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHA 310
G +VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I + A
Sbjct: 177 TGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQA 235
Query: 311 IGATGIVSQECKAVVSQYGE 330
IGAT +QYGE
Sbjct: 236 IGATQ----------NQYGE 245
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE +DC LS +P V F I GK++ LTP Y + D C SGF + +
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQK 295
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEA 509
WILGDVF+ Y++VFD +N VG A+A
Sbjct: 296 WILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 142/237 (59%), Gaps = 9/237 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
+KN D +Y+G I IGTPP++F VIFDTGSSNLWV SS C + AC H+K++ +SSTY
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLG 197
+ GK+ D+ YGTG + G +D V +G +Q + EP A FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
+ I+ AVPV+ NM +Q LV + +FSF+ + G E++ GG+D HY G ++
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG--ANGSEVMLGGVDNSHYTGSIHWI 182
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
PVT + YWQ + + ++GQT C GC AI D+GTS + P + + + IGA+
Sbjct: 183 PVTAEKYWQVALDGITVNGQTAA-CE-GCQAIVDTGTSKIVAPVSALANIMKDIGAS 237
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
GE +C+ + SLP ++FTI G L P YI EGD A C SG + V L
Sbjct: 241 GEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSEL 296
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
WI GDVF+ Y+T++D +N +VGFA AA
Sbjct: 297 WIFGDVFLRNYYTIYDRTNNKVGFAPAA 324
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 112/157 (71%), Gaps = 4/157 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD---QATREPSLTFLLAKFDGILG 195
S+YK NG + Y TG +SGF S+D + +G + V + T P+L F+LA+FDG++G
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVG 129
Query: 196 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNA 232
+GF E ++G+ P++ N+++QG++ E VFSF++NR++
Sbjct: 130 MGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDS 166
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 19/256 (7%)
Query: 68 RGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIAC 127
+ +LG +GD+ V L + + Y+GE IG Q F IFDTGS+NLWVPS++C +I C
Sbjct: 3 KPHLGNAGDS--VTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGC 59
Query: 128 YFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATRE 180
+ Y S +S TY+K+G +++Y +G +SGFFS+D V I +L V D E
Sbjct: 60 KTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYKFIEVTDTNGFE 119
Query: 181 PSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 240
P+ T L +FDGI+GLG++++S+G PV + NQ + + VF+F+ D++ G +
Sbjct: 120 PAYT--LGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL--PFDDKHKGYL 175
Query: 241 VFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGP 300
GG++ Y+G+ TY + YWQ D+ D AI DSGTS + P
Sbjct: 176 TIGGIEDRFYEGQLTYEKLNHDLYWQVDL-----DLHFGNLTVEKATAIVDSGTSSITAP 230
Query: 301 TTIITQVNHAIGATGI 316
T + + + I
Sbjct: 231 TEFLNKFFEGLDVVKI 246
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 406 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQ 465
LN E D + P + LP + F ++ L P+ Y+ ++ + +
Sbjct: 232 EFLNKFFEGLDVVKIPFLPLYITTCNNPKLPTLEFRSATNVYTLEPEYYLQQIFDFGISL 291
Query: 466 CISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
C+ +D+ +ILGD FM Y TVFDY N VGFA A
Sbjct: 292 CMVSIIPVDL---NKNTFILGDPFMRKYFTVFDYDNHTVGFALA 332
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 17/236 (7%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC SI C Y S +
Sbjct: 4 DVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSLTFLLAKF 190
S +Y+K+G +I YG+G + GFFS+D V +G L V D EP T A+F
Sbjct: 63 SKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLPYKFIEVTDTDDLEPLYT--AAEF 120
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILGLG++++S+G P+ + NQ +++ +F+F+ + ++ G + GG++ Y
Sbjct: 121 DGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVH--DKHSGYLTIGGIEEKFY 178
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 306
+GE TY + +WQ D+ DV G+T+ I DSGTS + PT+ I +
Sbjct: 179 EGELTYEKLNHDLFWQVDL-DVNF-GKTS---MEKANVIVDSGTSTITAPTSFINK 229
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 435 LPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 494
+P + F + L P+ Y+ + + D C+ +D+ +ILGD FM Y
Sbjct: 254 MPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDPFMRKYF 310
Query: 495 TVFDYSNMRVGFAEA 509
TVFDY +GFA A
Sbjct: 311 TVFDYDKESIGFAVA 325
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 19/258 (7%)
Query: 56 ESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLW 115
E+F Y + LG + D++ L + + ++GE +G Q F +IFDTGS+NLW
Sbjct: 32 ETFNFFKSGYMKQNYLG--SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLW 89
Query: 116 VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV--- 172
VPS KC S C + Y S +S +Y+K+G DI YG+G + GFFS+D V +G L
Sbjct: 90 VPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPY 148
Query: 173 ----VKDQATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF 228
V D EP + +FDGILGLG++++S+G P+ + NQ ++ +F+F+
Sbjct: 149 KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 206
Query: 229 NRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAA 288
+ G + GG++ Y+G TY + YWQ D+ DV QT
Sbjct: 207 --PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQT----MEKANV 259
Query: 289 IADSGTSLLAGPTTIITQ 306
I DSGT+ + P+ + +
Sbjct: 260 IVDSGTTTITAPSEFLNK 277
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 435 LPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 494
+P + F + L P+ Y+ + E D C+ +D+ +ILGD FM Y
Sbjct: 302 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDPFMRKYF 358
Query: 495 TVFDYSNMRVGFAEA 509
TVFDY VGFA A
Sbjct: 359 TVFDYDKESVGFAIA 373
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 17/236 (7%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC S C + Y S +
Sbjct: 6 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSK 64
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSLTFLLAKF 190
S +Y+K+G DI YG+G + GFFS+D V +G L V D EP + +F
Sbjct: 65 SKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVIDTDDLEP--IYSSVEF 122
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILGLG++++S+G P+ + NQ ++ +F+F+ + + G + GG++ Y
Sbjct: 123 DGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH--DVHAGYLTIGGIEEKFY 180
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 306
+G TY + YWQ D+ DV QT I DSGT+ + P+ + +
Sbjct: 181 EGNITYEKLNHDLYWQIDL-DVHFGKQT----MEKANVIVDSGTTTITAPSEFLNK 231
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 435 LPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 494
+P + F + L P+ Y+ + E D C+ +D+ +ILGD FM Y
Sbjct: 256 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDPFMRKYF 312
Query: 495 TVFDYSNMRVGFAEA 509
TVFDY VGFA A
Sbjct: 313 TVFDYDKESVGFAIA 327
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 17/236 (7%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L + + ++GE IGT Q F IFDTGS+NLWVPS C SI C Y +
Sbjct: 4 DSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYDASA 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSLTFLLAKF 190
S +Y+K+G +I YG+G + G+FS+D + +GDL V D EP + ++F
Sbjct: 63 SKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLPYKFIEVTDADDLEP--IYSGSEF 120
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILGLG++++S+G PV + Q ++ +F+F+ + ++ G + GG++ D Y
Sbjct: 121 DGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVH--DKHVGYLTIGGIESDFY 178
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 306
+G TY + YWQ D+ D + A+ DSGTS + PT+ + +
Sbjct: 179 EGPLTYEKLNHDLYWQIDL-----DIHFGKYVMQKANAVVDSGTSTITAPTSFLNK 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 435 LPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 494
LP + F + L P+ Y+ + + D A C+ +D+ +ILGD FM Y
Sbjct: 254 LPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDI---DDNTFILGDPFMRKYF 310
Query: 495 TVFDYSNMRVGFAEA 509
TVFDY VGFA A
Sbjct: 311 TVFDYEKESVGFAVA 325
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 123 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 179
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSL 183
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP
Sbjct: 180 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP-- 237
Query: 184 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + G
Sbjct: 238 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 295
Query: 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 303
G++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 296 GIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDF 350
Query: 304 ITQV 307
+ ++
Sbjct: 351 LNKM 354
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 351 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 410
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 411 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 449
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 50 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 106
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSL 183
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP
Sbjct: 107 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP-- 164
Query: 184 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + G
Sbjct: 165 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 222
Query: 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 303
G++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 223 GIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDF 277
Query: 304 ITQV 307
+ ++
Sbjct: 278 LNKM 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 278 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 337
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 338 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 376
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 57
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSL 183
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP
Sbjct: 58 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP-- 115
Query: 184 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 173
Query: 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 303
G++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDF 228
Query: 304 ITQV 307
+ ++
Sbjct: 229 LNKM 232
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 229 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 288
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 289 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 57
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSL 183
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP
Sbjct: 58 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP-- 115
Query: 184 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 173
Query: 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 303
G++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTDF 228
Query: 304 ITQV 307
+ ++
Sbjct: 229 LNKM 232
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 229 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 288
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 289 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 176 QATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 235
+AT++P +TF+ AKFDGILG+ + ISV +PV+ N++ Q LV++ +FSF+ +R+ D +
Sbjct: 12 EATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ 71
Query: 236 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTS 295
GGE++ GG D +YKG +Y+ VT+K YWQ + V + T C GC AI D+GTS
Sbjct: 72 PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTS 130
Query: 296 LLAGPTTIITQVNHAIGATGIVSQE 320
L+ GP + ++ AIGA ++ E
Sbjct: 131 LMVGPVDEVRELQKAIGAVPLIQGE 155
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 65/93 (69%)
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
+P GE + C ++S+LP ++ +GGK + L+P+ Y LKV + C+SGF +D+ P
Sbjct: 149 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPP 208
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
P GPLWILGDVF+G Y+TVFD N RVGFAEAA
Sbjct: 209 PSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C Y S +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSLTFLLAKF 190
S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP T+ + F
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP--TYTASTF 120
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILGLG++++S+G P+ + NQ + +F+F+ ++ G + GG++ Y
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFY 178
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307
+G TY + YWQ + +D I DSGTS + PT + ++
Sbjct: 179 EGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKM 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 227 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 286
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 287 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C Y S +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLV-------VKDQATREPSLTFLLAKF 190
S TY+K+G +++Y +G +SGFFS+D V +G+L V D EP T+ + F
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEP--TYTASTF 120
Query: 191 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 250
DGILGLG++++S+G P+ + NQ + +F+F+ ++ G + GG++ Y
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFY 178
Query: 251 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307
+G TY + YWQ + +D I DSGTS + PT + ++
Sbjct: 179 EGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 408 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 467
LN + + D + P V S LP FT + L P+ Y+ + + C+
Sbjct: 227 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 286
Query: 468 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
LD P +ILGD FM Y TVFDY N VG A A
Sbjct: 287 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 424 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 483
E VDC+ LSS+P VSFTIGGK F LTP+QYILKVG+G+A QCISGF+A+D A GPLW
Sbjct: 2 ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLW 60
Query: 484 ILGDVFMGPYHTVFDYSNMRVGFAEAA 510
ILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct: 61 ILGDVFMRPYHTVFDYGNLLVGFAEAA 87
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSS 139
LKNYMDAQY+GEIGIGTPPQ FTV+FDTGSSNLWVPS C IAC+ H KY S +SS
Sbjct: 6 VLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSS 65
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKI 168
TY KNG S DIHYG+G++SG+ S+D V +
Sbjct: 66 TYVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 120 bits (301), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/107 (51%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 313 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENN 372
A IVS ECK +VSQYGE I ++L++ P ++CSQ GLC DG++ VS I++VV
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 373 HRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 419
+S G +C+ CEMAVVWMQNQLKQ T+E++L YVN+LC+++P
Sbjct: 63 EGSSVG-EAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 133/237 (56%), Gaps = 18/237 (7%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y+G++ IGTP + F + FDTGSS+LW+ S+ C + +KY +SSTY+ +G+
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPNQSSTYQADGR 71
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEI 201
+ I YG G + SG ++D+V +G L++K Q A RE + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTI 130
Query: 202 SVGKAVPV-WYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPV- 259
+ + V N+++QGL++ P+F + + A GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 260 TQKGYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
+G+W + +D T G A I D+GT+LL P I V A GA+
Sbjct: 190 NSRGWWG-----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGF--SALDVAPPRG 480
G + C P+V F+I G F ++PD + + +G QCI+GF D A
Sbjct: 246 GTYTISCDTSRFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWDFA---- 297
Query: 481 PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
I+GD F+ + VF+ V A A
Sbjct: 298 ---IIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 133/237 (56%), Gaps = 18/237 (7%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y+G++ IGTP + F + FDTGSS+LW+ S+ C + +KY +SSTY+ +G+
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSGQTKYDPNQSSTYQADGR 71
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEI 201
+ I YG G + SG ++D+V +G L++K Q A RE + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTI 130
Query: 202 SVGKAVPV-WYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPV- 259
+ + V N+++QGL++ P+F + + A GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 260 TQKGYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
+G+W + +D T G A I D+GT+LL P I V A GA+
Sbjct: 190 NSRGWW-----GITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 423 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPL 482
G + C + P+V F+I G F ++PD + + +G QCI+GF +
Sbjct: 246 GTYTISCDTSAFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWG-----F 296
Query: 483 WILGDVFMGPYHTVFDYSNMRVGFAEAA 510
I+GD F+ + VF+ V A A
Sbjct: 297 AIIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 28/258 (10%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G D ++ +Y + IGTP Q+F ++FDTGSS+ WVP C S C +
Sbjct: 5 GSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFD 64
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ------------ATREPS 182
SST+K + +I YGTG +G + ED + IGD+ V Q A + P+
Sbjct: 65 PSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPN 124
Query: 183 LTFLLAKFDGILGLGFQEISVGKAV------PVWYNMVNQGLVNEPVFSFWFNRNADEEE 236
L DG+ G + + + +A V N+ QGL++ P+FS + N N+
Sbjct: 125 ADIFL---DGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT-- 179
Query: 237 GGEIVFGGMDPDHYKGEHTYVPVTQK--GY--WQFDMGDVMIDGQTTGFCAGGCAAIADS 292
GE+VFGG++ G+ Y V + GY W + + +DG + A D+
Sbjct: 180 -GEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDT 238
Query: 293 GTSLLAGPTTIITQVNHA 310
GT+ P++ +++ A
Sbjct: 239 GTNFFIMPSSAASKIVKA 256
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 475 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
+ P G +I+G++F+ + V+D+ N R+GFA A
Sbjct: 320 ILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAPLA 355
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 13/234 (5%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D V LK+ + FGE +G Q F +F T SSN+WVPS KC S +C + Y S +
Sbjct: 8 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 66
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQATREPSLT-----FLLAKFDG 192
S TY+K+ + G ISG FS+D V IG L V + + + + DG
Sbjct: 67 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYKFIEMTEIVGFEPFYSESDVDG 126
Query: 193 ILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKG 252
+ GLG++++S+G P + Q + + V+S + + + G + GG++ + G
Sbjct: 127 VFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFFDG 184
Query: 253 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 306
Y + WQ D+ D + I DS TS++ PT Q
Sbjct: 185 PLNYEKLNHDLMWQVDL-----DVHFGNVSSKKANVILDSATSVITVPTEFFNQ 233
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 433 SSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGP 492
+ LP + + K++ L P QY+ + +A C+ +D+ ++LGD FM
Sbjct: 256 TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRK 312
Query: 493 YHTVFDYSNMRVGFAEA 509
Y TV+DY N VGFA A
Sbjct: 313 YFTVYDYDNHTVGFALA 329
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 13/237 (5%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
+ D V LK+ + FGE +G Q F +F T SSN+WVPS KC S +C + Y
Sbjct: 124 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 182
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQATREPSLT-----FLLAK 189
S +S TY+K+ + G ISG FS+D V IG L V + + + +
Sbjct: 183 SSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYKFIEMTEIVGFEPFYSESD 242
Query: 190 FDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDH 249
DG+ GLG++++S+G P + Q + + V+S + + + G + GG++
Sbjct: 243 VDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERF 300
Query: 250 YKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 306
+ G Y + WQ D+ D + I DS TS++ PT Q
Sbjct: 301 FDGPLNYEKLNHDLMWQVDL-----DVHFGNVSSKKANVILDSATSVITVPTEFFNQ 352
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 433 SSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGP 492
+ LP + + K++ L P QY+ + +A C+ +D+ ++LGD FM
Sbjct: 375 TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRK 431
Query: 493 YHTVFDYSNMRVGFAEA 509
Y TV+DY N VGFA A
Sbjct: 432 YFTVYDYDNHTVGFALA 448
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 24/247 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ IGTPPQ ++ DTGSSN V + Y + + + RSSTY+ G
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-----HSYIDTYFDTERSSTYRSKGFDVT 69
Query: 150 IHYGTGAISGFFSEDHVKI----GDLVVKDQATREPSLTFLLA--KFDGILGLGFQEIS- 202
+ Y G+ +GF ED V I + + AT S F L K++GILGL + ++
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAK 129
Query: 203 VGKAVPVWYN-MVNQGLVNEP-VFSFW-----FNRNADEEEGGEIVFGGMDPDHYKGEHT 255
++ +++ +V Q N P VFS GG +V GG++P YKG+
Sbjct: 130 PSSSLETFFDSLVTQA--NIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIW 187
Query: 256 YVPVTQKGYWQFDMGDVMIDGQTTGF-CAGGCA--AIADSGTSLLAGPTTIITQVNHAIG 312
Y P+ ++ Y+Q ++ + I GQ+ C A AI DSGT+LL P + V A+
Sbjct: 188 YTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVA 247
Query: 313 ATGIVSQ 319
++ +
Sbjct: 248 RASLIPE 254
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 116/275 (42%), Gaps = 34/275 (12%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G D L ++ +Y + IGTP Q+F ++FDTGSS+ WVP C S C +
Sbjct: 5 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFD 64
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ------------ATREPS 182
SST+K+ + +I YGTG +G + D + +G VK Q A + P
Sbjct: 65 PSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPD 124
Query: 183 LTFLLAKFDGILGLGFQEISVGKAV------PVWYNMVNQGLVNEPVFSFWFNRN----- 231
L DGI G + + + +A V N+ QGL++ PVFS + N N
Sbjct: 125 SELFL---DGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQ 181
Query: 232 ADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGY--WQFDMGDVMIDGQTTGFCAGGCAAI 289
+ GG ++T V ++ GY W + V IDG G A
Sbjct: 182 VVFGGVNNTLLGG------DIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFT 235
Query: 290 ADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAV 324
D+GT+ P++ +V A SQ+ V
Sbjct: 236 IDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTV 270
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 475 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
V P G +I+G++F+ + V+D+ R+GFA A
Sbjct: 320 VLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 111/251 (44%), Gaps = 19/251 (7%)
Query: 75 GDADIVALKN----YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYF 129
+A IV L +++ QY G IG QNF +FD+ S N+ V S +C + C
Sbjct: 2 AEASIVPLYKLVHVFINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPN 59
Query: 130 HSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ---ATREPSLTFL 186
KY + Y +G + TG+ G ED + I L Q E S
Sbjct: 60 LQKYEKLKPK-YISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVC 118
Query: 187 LAKFDGILGL---GFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243
+ D ++G+ G GK V N V + L+ PVFS R D E GEI+FG
Sbjct: 119 ILSADVVVGIAAPGCPNALKGKTV--LENFVEENLI-APVFSIHHARFQDGEHFGEIIFG 175
Query: 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 303
G D + GE TYVP+ W+F + V I G TT G AI D+ +++ GP
Sbjct: 176 GSDWKYVDGEFTYVPLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAY 233
Query: 304 ITQVNHAIGAT 314
+ +N AIG
Sbjct: 234 VNPINEAIGCV 244
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 427 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILG 486
+DCS++ SLP V+F I G+ F+++ YI + G C SGF + +G
Sbjct: 256 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQPCG----HSDHFFIG 307
Query: 487 DVFMGPYHTVFDYSNMRVGFAEAA 510
D F+ Y++ F++ N +GF +
Sbjct: 308 DFFVDHYYSEFNWENKTMGFGRSV 331
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 25/238 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIA--------CYFHSKYRSGRSSTY 141
Y +I +G+ Q VI DTGSS+LW+P S C Y S T
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 142 KKNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQE 200
+ DI YG G+ + G +D V IG + V+DQ + + GILG+GFQ
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFAN---VWSTSARKGILGIGFQS 130
Query: 201 ISVGKAVPVWYN-----MVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHT 255
G+A Y+ + NQG++ + +S + N+ E G+I+FGG+D Y G
Sbjct: 131 ---GEATEFDYDNLPISLRNQGIIGKAAYSLYL--NSAEASTGQIIFGGIDKAKYSGSLV 185
Query: 256 YVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
+P+T + + V + G+ + DSGT++ +I+ + +AIGA
Sbjct: 186 DLPITSEKKLTVGLRSVNVRGRNVD---ANTNVLLDSGTTISYFTRSIVRNILYAIGA 240
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 106/237 (44%), Gaps = 15/237 (6%)
Query: 85 YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKK 143
+++ QY G IG QNF +FD+ S N+ V S +C + C KY + Y
Sbjct: 14 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPK-YIS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ---ATREPSLTFLLAKFDGILGL---G 197
+G + TG+ G ED + I L Q E S + D ++G+ G
Sbjct: 71 DGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPG 130
Query: 198 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
GK V N V + L+ PVFS R D E GEI+FGG D + GE TYV
Sbjct: 131 CPNALKGKTV--LENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYV 187
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
P+ W+F + V I G TT G AI D+ +++ GP + +N AIG
Sbjct: 188 PLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV 242
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 427 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG--PLWI 484
+DCS++ SLP V+F I G+ F+++ YI + G C SGF P G +
Sbjct: 254 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQ------PXGHSDHFF 303
Query: 485 LGDVFMGPYHTVFDYSNMRVGFAEAA 510
+GD F+ Y++ F++ N +GF +
Sbjct: 304 IGDFFVDHYYSEFNWENKTMGFGRSV 329
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 29/220 (13%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +G+G+P ++++ DTGSSN W+ + K Y ++ST
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYV-------------KTSTSSATSDKVS 60
Query: 150 IHYGTGAISGFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQEISVGKAVP- 208
+ YG+G+ SG D V +G L + Q+ S DGILG+G +++VG P
Sbjct: 61 VTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPH 120
Query: 209 -------VWYNMVNQGLVNEPVFSFWFNRNADEEE-GGEIVFGGMDPDHYKGEHTYVPVT 260
V N+ +QG + + + F E GE+ FG D Y G TY P+T
Sbjct: 121 TSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPIT 180
Query: 261 Q----KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
YW + + G +T + A I D+GT+L
Sbjct: 181 STSPASAYWGINQS--IRYGSSTSILS-STAGIVDTGTTL 217
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 440 FTIGGKIFDLTPDQYI----LKVGEGDAAQCISGFSA-LDVAPPRGPLWILGDVFMGPYH 494
FTIGG+ F+LT + I L G +A + L G +I G F+ ++
Sbjct: 258 FTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFY 317
Query: 495 TVFDYSNMRVGF 506
+V+D +N R+G
Sbjct: 318 SVYDTTNKRLGL 329
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 21/237 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSS--KCYFSIACYFHSKYRSGRSSTYKKNGKS 147
Y ++ +G+ Q TVI DTGSS+ WV S +C + C + SS+YK G +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 148 ADIHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQ------E 200
I YG G+ S G + +D V I + + Q + + T + GILG+G+ +
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSV---DQGILGIGYTSNEAVYD 130
Query: 201 ISVGKAVPVWYN----MVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 256
S + P + N + QG + +S + N+ E G I+FGG+D Y G+
Sbjct: 131 TSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYL--NSPSAETGTIIFGGVDNAKYSGKLVA 188
Query: 257 VPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
VT + V + G + F G A+ DSGT+L P+ Q+ GA
Sbjct: 189 EQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAGA 242
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 23/238 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWV--PSSKCYFSIA------CYFHSKYRSGRSSTY 141
Y +I +G+ Q TV+ DTGSS+LWV ++C + + C + SS+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 142 KKNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQE 200
+ + I YG S G F +D V G + +K+Q + + T + GI+G+GF
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQ---GIMGIGFTA 130
Query: 201 ISVG----KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 256
G VPV + QG++N+ +S + N +++ G+I+FGG+D Y G T
Sbjct: 131 DEAGYNLYDNVPV--TLKKQGIINKNAYSLYLN--SEDASTGKIIFGGVDNAKYTGTLTA 186
Query: 257 VPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314
+PVT + +G + DG + A + DSGT++ + + +GAT
Sbjct: 187 LPVTSSVELRVHLGSINFDGTSVSTNAD---VVLDSGTTITYFSQSTADKFARIVGAT 241
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +I +G+ Q VI DTGSS+LWVP + + + TY +G SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 150 --------IHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQE 200
I YG G+ S G +D V G + +K+Q + T + GILG+G++
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ---GILGVGYKT 130
Query: 201 ISVGKA---VPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
G + VPV + QG++ + +S + N + + G+I+FGG+D Y G +
Sbjct: 131 NEAGGSYDNVPV--TLKKQGVIAKNAYSLYLN--SPDAATGQIIFGGVDNAKYSGSLIAL 186
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
PVT + +G V + G+T + DSGT++
Sbjct: 187 PVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTI 223
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +I +G+ Q VI DTGSS+LWVP + + + TY +G SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 150 --------IHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQE 200
I YG G+ S G +D V G + +K+Q + T + GILG+G++
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ---GILGVGYKT 130
Query: 201 ISVGKA---VPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
G + VPV + QG++ + +S + N + + G+I+FGG+D Y G +
Sbjct: 131 NEAGGSYDNVPV--TLKKQGVIAKNAYSLYLN--SPDSATGQIIFGGVDNAKYSGSLIAL 186
Query: 258 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
PVT + +G V + G+T + DSGT++
Sbjct: 187 PVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTI 223
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 155 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 273
Query: 311 IGA 313
I A
Sbjct: 274 IKA 276
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIA-------CYFHSKYRSGRSSTYK 142
Y +I +G+ Q TV+ DTGSS+LWVP S+ C Y SS+ +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 143 KNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGFQEI 201
I YG G S G + +D + G + + Q + + T + GILG+G++
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTST---SVDQGILGIGYKTH 130
Query: 202 SV-GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVT 260
G V + NQG++++ +S + N + G+I+FGG+D Y G +PVT
Sbjct: 131 EAEGNYDNVPVTLKNQGIISKNAYSLYLNSR--QATSGQIIFGGVDNAKYSGTLIALPVT 188
Query: 261 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
+ + V + GQ+ + DSGT++
Sbjct: 189 SDNELRIHLNTVKVAGQSIN---ADVDVLLDSGTTI 221
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 311 IGA 313
I A
Sbjct: 264 IKA 266
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 311 IGA 313
I A
Sbjct: 288 IKA 290
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 102/224 (45%), Gaps = 32/224 (14%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSG------------- 136
Y +I IG+ Q F VI DTGSS+LWVP + S+ C K R G
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDA----SVTC---DKPRPGQSADFCKGKGIYT 66
Query: 137 -RSSTYKKN-GKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQATREPSLTFLLAKFDGI 193
+SST +N G I YG G+ S G +D V G + Q + + T + GI
Sbjct: 67 PKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIP---QGI 123
Query: 194 LGLGFQ-EISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKG 252
LG+G++ + G V + NQG++ + +S + N+ G+I+FGG+D Y G
Sbjct: 124 LGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYL--NSPNAATGQIIFGGVDKAKYSG 181
Query: 253 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
VPVT + + + G+ G + DSGT++
Sbjct: 182 SLIAVPVTSDRELRITLNSLKAVGKNIN---GNIDVLLDSGTTI 222
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 311 IGA 313
I A
Sbjct: 269 IKA 271
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 311 IGA 313
I A
Sbjct: 269 IKA 271
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y GA +G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSG + L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 147 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 265
Query: 311 IGA 313
I A
Sbjct: 266 IKA 268
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 311 IGA 313
I A
Sbjct: 267 IKA 269
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 311 IGA 313
I A
Sbjct: 254 IKA 256
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 311 IGA 313
I A
Sbjct: 267 IKA 269
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 311 IGA 313
I A
Sbjct: 249 IKA 251
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 152 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 270
Query: 311 IGA 313
I A
Sbjct: 271 IKA 273
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 311 IGA 313
I A
Sbjct: 267 IKA 269
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 146 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 264
Query: 311 IGA 313
I A
Sbjct: 265 IKA 267
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 311 IGA 313
I A
Sbjct: 254 IKA 256
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 311 IGA 313
I A
Sbjct: 264 IKA 266
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 311 IGA 313
I A
Sbjct: 252 IKA 254
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 311 IGA 313
I A
Sbjct: 264 IKA 266
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 311 IGA 313
I A
Sbjct: 254 IKA 256
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 311 IGA 313
I A
Sbjct: 257 IKA 259
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 311 IGA 313
I A
Sbjct: 311 IKA 313
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 311 IGA 313
I A
Sbjct: 251 IKA 253
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 311 IGA 313
I A
Sbjct: 288 IKA 290
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 136 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 311 IGA 313
I A
Sbjct: 255 IKA 257
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 311 IGA 313
I A
Sbjct: 252 IKA 254
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 191 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 311 IGA 313
I A
Sbjct: 310 IKA 312
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 311 IGA 313
I A
Sbjct: 311 IKA 313
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 311 IGA 313
I A
Sbjct: 268 IKA 270
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 311 IGA 313
I A
Sbjct: 252 IKA 254
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 311 IGA 313
I A
Sbjct: 257 IKA 259
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 311 IGA 313
I A
Sbjct: 264 IKA 266
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 311 IGA 313
I A
Sbjct: 252 IKA 254
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 134 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 311 IGA 313
I A
Sbjct: 253 IKA 255
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 311 IGA 313
I A
Sbjct: 252 IKA 254
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 311 IGA 313
I A
Sbjct: 264 IKA 266
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 358 RGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDR 417
+GVS+G +++ E+ A D S + ++ ++ ++R+ +YV
Sbjct: 36 KGVSVGSSTLLCEDGCLA---LVDTGASYISGSTSSIEKLMEALGAKKRLFDYV------ 86
Query: 418 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477
V C+ +LP +SF +GGK + LT Y+ + C A+D+ P
Sbjct: 87 ---------VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPP 137
Query: 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509
P GP W LG F+ ++T FD N R+GFA A
Sbjct: 138 PTGPTWALGATFIRKFYTEFDRRNNRIGFALA 169
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 237 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 296
GG+IV GG DP HY+G Y+ + + G WQ M V + G +T C GC A+ D+G S
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASY 61
Query: 297 LAGPTTIITQVNHAIGA 313
++G T+ I ++ A+GA
Sbjct: 62 ISGSTSSIEKLMEALGA 78
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 311 IGA 313
I A
Sbjct: 249 IKA 251
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 129 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 311 IGA 313
I A
Sbjct: 248 IKA 250
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 25/243 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 253
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 254 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 310
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 311 IGA 313
I A
Sbjct: 251 IKA 253
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 18/229 (7%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVX--QTIYTPSKSTTAKLLS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQA---TREPSLTFLL-AKFDGILGLGFQ 199
+ + + SG D V +G L V QA ++ S +F + DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 130
Query: 200 EISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 131 TLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 185
Query: 258 PV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 305
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 186 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 18/229 (7%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVX--QTIYTPSKSTTAKLLS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQA---TREPSLTFLL-AKFDGILGLGFQ 199
+ + + SG D V +G L V QA ++ S +F + DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 130
Query: 200 EISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 131 TLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 185
Query: 258 PV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 305
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 186 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 29/232 (12%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NG 145
D +Y + IG N FDTGS++LWV S++ S HS Y S+T K+ +G
Sbjct: 14 DEEYITPVTIGGTTLNLN--FDTGSADLWVFSTELPASQQSG-HSVYN--PSATGKELSG 68
Query: 146 KSADIHYGTG-AISGFFSEDHVKIGDLVVKDQATREPSLTFLLAKF------DGILGLGF 198
+ I YG G + SG D V +G + QA + + A+F DG+LGL F
Sbjct: 69 YTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQ--ISAQFQQDTNNDGLLGLAF 126
Query: 199 QEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 256
I+ ++ +++ V L +P+F+ ++ G FG +D Y G TY
Sbjct: 127 SSINTVQPQSQTTFFDTVKSSLA-QPLFAVALKH----QQPGVYDFGFIDSSKYTGSLTY 181
Query: 257 VPV-TQKGYWQFDMGDVMIDGQTTGFCAG-GCAAIADSGTSLLAGPTTIITQ 306
V +G+W F+ +D T G +G G + IAD+GT+LL ++++Q
Sbjct: 182 TGVDNSQGFWSFN-----VDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQ 228
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 420 SPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPR 479
S G DCS ++LP S +I G + P I GD + C+ G +
Sbjct: 240 SNAGGYVFDCS--TNLPDFSVSISGYTATV-PGSLINYGPSGDGSTCLGG-----IQSNS 291
Query: 480 G-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510
G I GD+F+ + VFD ++GFA A
Sbjct: 292 GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTTAKLLS 71
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQA---TREPSLTFLL-AKFDGILGLGFQ 199
+ + + SG D V +G L V QA ++ S +F + DG+LGL F
Sbjct: 72 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 200 EISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 132 TLNTVSPTQXKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 186
Query: 258 PV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 305
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 187 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTTAKLLS 71
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQA---TREPSLTFLL-AKFDGILGLGFQ 199
+ + + SG D V +G L V QA ++ S +F + DG+LGL F
Sbjct: 72 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 200 EISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 132 TLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 186
Query: 258 PV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 305
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 187 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y ++ +G + FDTGS++LWV SS+ S H Y G SS K +G
Sbjct: 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERS-GHDYYTPG-SSAQKIDGA 69
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQATREPSLTFLLAKF------DGILGLGFQ 199
+ I YG G + SG +D V +G + QA S + ++F DG+LGL F
Sbjct: 70 TWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVE--SAEKVSSEFTQDTANDGLLGLAFS 127
Query: 200 EISVGKAVP--VWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
I+ + P +++ V L +EP+F+ NA G FG D Y G TY
Sbjct: 128 SINTVQPTPQKTFFDNVKSSL-SEPIFAVALKHNAP----GVYDFGYTDSSKYTGSITYT 182
Query: 258 PV-TQKGYWQFDMGDVMIDG--QTTGFCAGGCAAIADSGTSLLAGPTTII----TQVNHA 310
V +G+W F DG + + IAD+GT+LL +I+ QVN A
Sbjct: 183 DVDNSQGFWGF-----TADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGA 237
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 433 SSLPIVSFTIGGKIFDLTPDQYI--LKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFM 490
+SLP S TIG + P +YI VG G I S + + I GDVF+
Sbjct: 252 ASLPDFSVTIGDYTATV-PGEYISFADVGNGQTFGGIQSNSGIGFS-------IFGDVFL 303
Query: 491 GPYHTVFDYSNMRVGFAEAA 510
+ VFD S R+GFA A
Sbjct: 304 KSQYVVFDASGPRLGFAAQA 323
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 23/221 (10%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y + +G + FDTGS++LWV S + S H Y S+T K +G
Sbjct: 13 DEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQT-GHDLYTPSSSAT-KLSGY 68
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQATREPSLTFLLAKF------DGILGLGFQ 199
S DI YG G + SG D V +G + QA S + ++F DG+LGL F
Sbjct: 69 SWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASK--ISSEFVQDTANDGLLGLAFS 126
Query: 200 EISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 257
I+ KA +++ V L + P+F+ +A G FG +D Y G TY
Sbjct: 127 SINTVQPKAQTTFFDTVKSQL-DSPLFAVQLKHDAP----GVYDFGYIDDSKYTGSITYT 181
Query: 258 PV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLL 297
+ +GYW F I + G +AIAD+GT+L+
Sbjct: 182 DADSSQGYWGFSTDGYSI--GDGSSSSSGFSAIADTGTTLI 220
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKIGD----LVVKDQATREPSLTFLL--AKFDGILGLGFQEISV 203
+ Y G G D V I V + A S F + + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 204 --GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQ 261
P + ++V Q V +FS GG+D Y G Y P+ +
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGGGSMII------GGIDHSLYTGSLWYTPIRR 187
Query: 262 KGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHAIGA 313
+ Y++ + V I+GQ C +I DSGT+ L P + +I A
Sbjct: 188 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKA 242
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 102/229 (44%), Gaps = 35/229 (15%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D++Y + IGTP Q + FDTGSS+LWV SS+ S A H+ Y +SST KK
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATG-HAIYTPSKSSTSKKVSG 72
Query: 147 SA--DIHYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQE 200
++ + + SG D V IG V Q ATR + G++GL F
Sbjct: 73 ASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDS 132
Query: 201 ISVGKAVP--VWYNMVNQGLVNEPVFSFWFNRNADEEEG--GEIVFGGMDPDHYKGEHTY 256
+ + P W++ L EP+F+ AD G G FG +D KG Y
Sbjct: 133 GNQVRPHPQKTWFSNAASSLA-EPLFT------ADLRHGQNGSYNFGYIDTSVAKGPVAY 185
Query: 257 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGG-------CAAIADSGTSLL 297
PV +G+W+F +G+ GG IAD+GT+LL
Sbjct: 186 TPVDNSQGFWEF---------TASGYSVGGGKLNRNSIDGIADTGTTLL 225
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 428 DCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGD 487
DC LP SF +G + D L E ++ C F L + G + I GD
Sbjct: 254 DCDE--DLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTC---FGGLQSSSGIG-INIFGD 307
Query: 488 VFMGPYHTVFDYSNMRVGFAE 508
V + VFD N R+G+A+
Sbjct: 308 VALKAALVVFDLGNERLGWAQ 328
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSR 358
+S+EC+ VV YG I+++LL + P+ +CS + LC+ G+R
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS--GTR 85
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 381 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 424
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 5 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 384 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL--SSLPIVSFT 441
C C+ V + LK N T+E IL Y+ + CD LP P + C + S LP++
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP--NMSASCKEIVDSYLPVILDI 63
Query: 442 IGGKI 446
I G++
Sbjct: 64 IKGEM 68
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 353
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 381 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 424
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 2 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 353
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 381 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 424
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 4 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 353
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 381 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 424
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 4 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 384 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL--SSLPIVSFT 441
C C+ V + LK N T+E IL Y+ + CD LP P + C + S LP++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKP--NXSASCKEIVDSYLPVILDI 63
Query: 442 IGGK 445
I G+
Sbjct: 64 IKGE 67
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 382 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 421
C CE V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|1N69|A Chain A, Crystal Structure Of Human Saposin B
pdb|1N69|B Chain B, Crystal Structure Of Human Saposin B
pdb|1N69|C Chain C, Crystal Structure Of Human Saposin B
Length = 81
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 321 CKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 352
CK +SQY E I M++ +P++IC+ +G C
Sbjct: 49 CKNYISQYSEIAIQMMMHM-QPKEICALVGFC 79
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 377 GGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 421
GGF C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GGF----CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 42
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 382 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 421
C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 382 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 421
C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|3OKZ|A Chain A, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
pdb|3OKZ|B Chain B, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
Length = 306
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 27 NGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTS 61
+GG Y+I KK + NR+ LD K ++ +TS
Sbjct: 255 DGGSYQILTKKHLLAVQNRIKKELDKKRSKTLKTS 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,060,334
Number of Sequences: 62578
Number of extensions: 720926
Number of successful extensions: 1836
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 242
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)