Query 010466
Match_columns 510
No_of_seqs 290 out of 2052
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.9E-62 4.2E-67 513.4 40.2 320 76-510 107-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 3.2E-60 7E-65 480.2 37.0 320 84-508 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 2E-60 4.4E-65 479.6 34.7 313 80-508 1-317 (317)
4 cd05487 renin_like Renin stimu 100.0 9.3E-60 2E-64 476.8 38.2 322 82-509 1-326 (326)
5 cd05486 Cathespin_E Cathepsin 100.0 6E-60 1.3E-64 476.3 34.6 312 90-508 1-316 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 8.5E-59 1.9E-63 470.0 37.2 323 80-508 2-329 (329)
7 PTZ00147 plasmepsin-1; Provisi 100.0 1.7E-58 3.6E-63 480.2 39.7 321 75-510 125-450 (453)
8 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-58 4.1E-63 465.6 36.2 312 81-508 2-317 (317)
9 cd05488 Proteinase_A_fungi Fun 100.0 4.2E-58 9E-63 463.6 36.1 316 80-508 1-320 (320)
10 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-57 2.5E-62 473.0 39.5 321 75-510 124-449 (450)
11 cd05477 gastricsin Gastricsins 100.0 9.2E-58 2E-62 460.9 37.2 313 87-509 1-318 (318)
12 PF00026 Asp: Eukaryotic aspar 100.0 2.4E-53 5.2E-58 428.4 29.4 312 89-509 1-317 (317)
13 cd05473 beta_secretase_like Be 100.0 1.1E-49 2.4E-54 409.2 31.3 314 88-510 2-346 (364)
14 cd06097 Aspergillopepsin_like 100.0 1.7E-49 3.7E-54 393.1 29.7 215 90-312 1-225 (278)
15 PLN03146 aspartyl protease fam 100.0 9.4E-49 2E-53 408.2 32.3 301 86-509 81-426 (431)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.5E-48 7.7E-53 392.1 29.6 279 88-509 2-323 (326)
17 KOG1339 Aspartyl protease [Pos 100.0 7.5E-48 1.6E-52 399.2 30.1 316 78-509 35-392 (398)
18 cd05474 SAP_like SAPs, pepsin- 100.0 9.2E-47 2E-51 376.9 32.1 276 89-509 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 2.6E-46 5.7E-51 374.2 28.5 285 89-510 1-298 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 2.8E-44 6E-49 356.3 33.1 224 90-314 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.9E-43 6.3E-48 346.0 26.5 245 89-510 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 4.6E-43 9.9E-48 346.0 26.8 254 88-510 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.2E-39 2.7E-44 332.6 26.6 311 96-509 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.8 5.2E-20 1.1E-24 155.7 11.4 104 92-196 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.8 3.1E-19 6.7E-24 162.1 15.6 133 90-244 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 2.7E-19 5.8E-24 162.3 10.8 153 264-508 1-161 (161)
27 PF05184 SapB_1: Saposin-like 97.8 1.5E-05 3.2E-10 53.7 2.6 38 382-419 2-39 (39)
28 cd05483 retropepsin_like_bacte 97.7 9E-05 2E-09 60.3 6.6 91 89-198 2-94 (96)
29 PF03489 SapB_2: Saposin-like 97.2 0.00017 3.7E-09 47.2 1.3 34 319-352 2-35 (35)
30 TIGR02281 clan_AA_DTGA clan AA 96.7 0.0095 2.1E-07 51.0 8.7 100 80-198 2-103 (121)
31 PF11925 DUF3443: Protein of u 95.8 0.079 1.7E-06 53.2 10.4 192 90-301 24-271 (370)
32 PF13650 Asp_protease_2: Aspar 95.3 0.09 1.9E-06 41.8 7.7 87 92-197 1-89 (90)
33 COG3577 Predicted aspartyl pro 94.5 0.39 8.4E-06 44.3 10.1 88 74-176 90-178 (215)
34 cd05479 RP_DDI RP_DDI; retrope 93.5 0.47 1E-05 40.7 8.4 91 87-198 14-107 (124)
35 cd05479 RP_DDI RP_DDI; retrope 93.2 0.5 1.1E-05 40.5 8.2 25 482-506 100-124 (124)
36 KOG1340 Prosaposin [Lipid tran 92.3 0.23 5.1E-06 46.6 5.1 88 320-419 78-166 (218)
37 PF08284 RVP_2: Retroviral asp 92.1 0.38 8.2E-06 42.0 5.9 27 482-508 105-131 (135)
38 cd05484 retropepsin_like_LTR_2 91.8 0.44 9.5E-06 38.3 5.6 68 90-174 1-71 (91)
39 TIGR02281 clan_AA_DTGA clan AA 90.9 2.2 4.8E-05 36.4 9.3 37 261-307 8-44 (121)
40 cd06095 RP_RTVL_H_like Retrope 90.1 1.5 3.3E-05 34.8 7.2 81 93-198 2-84 (86)
41 smart00741 SapB Saposin (B) Do 88.5 0.52 1.1E-05 35.9 3.4 37 383-419 2-38 (76)
42 TIGR03698 clan_AA_DTGF clan AA 87.4 3.2 6.9E-05 34.5 7.7 23 482-504 85-107 (107)
43 smart00741 SapB Saposin (B) Do 86.2 0.46 9.9E-06 36.2 1.8 37 316-352 40-76 (76)
44 PF13975 gag-asp_proteas: gag- 83.1 1.9 4.1E-05 33.0 4.0 34 86-121 5-38 (72)
45 KOG1340 Prosaposin [Lipid tran 78.2 1.8 3.8E-05 40.8 2.7 50 307-356 158-207 (218)
46 PF13650 Asp_protease_2: Aspar 76.3 3.4 7.3E-05 32.4 3.6 29 272-307 3-31 (90)
47 PF13975 gag-asp_proteas: gag- 71.9 6.4 0.00014 30.0 4.0 29 272-307 13-41 (72)
48 PF00077 RVP: Retroviral aspar 71.5 4.8 0.0001 32.6 3.4 29 91-121 7-35 (100)
49 PF07966 A1_Propeptide: A1 Pro 68.5 3.2 7E-05 25.7 1.3 24 30-53 1-24 (29)
50 cd05484 retropepsin_like_LTR_2 68.4 7.3 0.00016 31.1 3.8 30 271-307 4-33 (91)
51 PF07172 GRP: Glycine rich pro 65.5 5 0.00011 32.6 2.3 20 3-22 1-20 (95)
52 cd05483 retropepsin_like_bacte 62.7 11 0.00024 29.7 4.0 29 272-307 7-35 (96)
53 PF12384 Peptidase_A2B: Ty3 tr 60.8 26 0.00057 31.4 6.0 25 284-308 44-68 (177)
54 cd06095 RP_RTVL_H_like Retrope 58.5 12 0.00026 29.5 3.3 29 272-307 3-31 (86)
55 cd05482 HIV_retropepsin_like R 57.8 12 0.00026 29.9 3.2 27 93-121 2-28 (87)
56 PF12384 Peptidase_A2B: Ty3 tr 42.9 30 0.00064 31.1 3.5 29 91-119 34-62 (177)
57 PF02160 Peptidase_A3: Caulifl 42.9 53 0.0011 30.6 5.3 50 434-506 66-115 (201)
58 PF00077 RVP: Retroviral aspar 42.3 21 0.00045 28.8 2.4 26 272-304 10-35 (100)
59 cd05481 retropepsin_like_LTR_1 41.0 30 0.00064 27.9 3.0 23 286-308 11-33 (93)
60 PF09668 Asp_protease: Asparty 39.2 75 0.0016 27.2 5.3 91 87-197 22-114 (124)
61 PF09668 Asp_protease: Asparty 36.8 42 0.0009 28.8 3.4 30 271-307 28-57 (124)
62 COG5550 Predicted aspartyl pro 32.8 28 0.0006 29.6 1.7 21 288-308 29-50 (125)
63 COG3577 Predicted aspartyl pro 29.9 71 0.0015 29.8 3.9 37 261-307 102-138 (215)
64 cd06094 RP_Saci_like RP_Saci_l 27.0 2.1E+02 0.0046 22.9 5.7 22 101-122 8-29 (89)
65 PRK15249 fimbrial chaperone pr 26.1 1.5E+02 0.0033 28.7 5.8 19 76-94 44-62 (253)
66 TIGR03698 clan_AA_DTGF clan AA 25.1 77 0.0017 26.2 3.1 66 92-173 2-73 (107)
67 TIGR01165 cbiN cobalt transpor 23.2 82 0.0018 25.3 2.6 24 1-24 1-24 (91)
68 COG4714 Uncharacterized membra 20.4 92 0.002 29.5 2.8 26 1-26 1-26 (303)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.9e-62 Score=513.42 Aligned_cols=320 Identities=41% Similarity=0.772 Sum_probs=280.8
Q ss_pred CccEEeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeE--CCc---EEEE
Q 010466 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADI 150 (510)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~--~~~---~~~~ 150 (510)
.....||.|+.|.+|+++|+||||||+|.|++||||+++||++..|. ...|..++.|||++|+||+. .+. .+.+
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i 185 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYI 185 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEE
Confidence 44778999999999999999999999999999999999999999997 56799999999999999998 555 6789
Q ss_pred EecCceEEEEEEEeEEEEcceEeccc----eeeecCccccccccceEEeeccccc---cCCCCCcHHHHHHHcCCCCCCe
Q 010466 151 HYGTGAISGFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEI---SVGKAVPVWYNMVNQGLVNEPV 223 (510)
Q Consensus 151 ~Y~~gs~~G~~~~D~v~~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~---s~~~~~~~l~~l~~qg~i~~~~ 223 (510)
.|++|++.|.+++|+|++|+..+++| +....+..|....+|||||||++.. +.....|++++|++||+|++++
T Consensus 186 ~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~ 265 (482)
T PTZ00165 186 QYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNI 265 (482)
T ss_pred EeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccce
Confidence 99999999999999999999999988 3333445566678899999999887 3345789999999999999999
Q ss_pred EEEEecCCCCCCCCcEEEEcCcCCCCc--ccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCH
Q 010466 224 FSFWFNRNADEEEGGEIVFGGMDPDHY--KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPT 301 (510)
Q Consensus 224 FSl~l~~~~~~~~~G~L~fGg~d~~~~--~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~ 301 (510)
||+||.+..+ .+|+|+|||+|+.++ .+++.|+|+.+.++|.|.+++|+++++.+..+.....+++||||+++++|.
T Consensus 266 FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~ 343 (482)
T PTZ00165 266 FSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPS 343 (482)
T ss_pred EEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCH
Confidence 9999986532 379999999999876 578999999999999999999999998887666778999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCC
Q 010466 302 TIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHD 381 (510)
Q Consensus 302 ~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (510)
+++++|.+++++.
T Consensus 344 ~~~~~i~~~i~~~------------------------------------------------------------------- 356 (482)
T PTZ00165 344 SVINPLLEKIPLE------------------------------------------------------------------- 356 (482)
T ss_pred HHHHHHHHHcCCc-------------------------------------------------------------------
Confidence 9999999988653
Q ss_pred ccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCE-----EEeeCccccee
Q 010466 382 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGK-----IFDLTPDQYIL 456 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~-----~~~i~~~~y~~ 456 (510)
.+|+....+|+|+|+|+|. +|.++|++|+.
T Consensus 357 ---------------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~ 391 (482)
T PTZ00165 357 ---------------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVI 391 (482)
T ss_pred ---------------------------------------------ccccccccCCceEEEECCCCCceEEEEEchHHeee
Confidence 2677777899999999764 89999999999
Q ss_pred eec--CCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 457 KVG--EGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 457 ~~~--~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
+.. ..+...|+++|+..+.+.+.++.||||++|||++|+|||.+++|||||+++
T Consensus 392 ~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 392 EEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred ecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 742 334568999999888665566889999999999999999999999999985
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.2e-60 Score=480.23 Aligned_cols=320 Identities=55% Similarity=1.038 Sum_probs=278.1
Q ss_pred eccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEE
Q 010466 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (510)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~ 162 (510)
|+.|.+|+++|.||||||++.|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EeEEEEcceEeccc----eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 010466 163 EDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 238 (510)
Q Consensus 163 ~D~v~~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G 238 (510)
+|+|+||+..++++ +....+..|.....+||||||++..+....+|++++|++||.|+.++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999888 22233334545568999999999888777889999999999999999999998754333479
Q ss_pred EEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccc
Q 010466 239 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVS 318 (510)
Q Consensus 239 ~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~ 318 (510)
+|+|||+|++++.|++.|+|+.+..+|.|++++|.|++.... +.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTL-CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeee-cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 999999999999999999999888999999999999886432 345678999999999999999999999988643
Q ss_pred cccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHh
Q 010466 319 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 398 (510)
Q Consensus 319 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (510)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCCC
Q 010466 399 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPP 478 (510)
Q Consensus 399 ~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 478 (510)
+...+.|.++|+....+|+|+|+|+|+.|+|+|++|+++........|++.|+..+.+..
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 012356889999888899999999999999999999997654445689999988775544
Q ss_pred CCCeeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 479 RGPLWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 479 ~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
..+.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 567899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2e-60 Score=479.63 Aligned_cols=313 Identities=86% Similarity=1.463 Sum_probs=276.2
Q ss_pred EeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEE
Q 010466 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (510)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G 159 (510)
+||.|+.+.+|+++|.||||||++.|++||||+++||+|..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57889999999999999999999999999999999999999964458999999999999999999999999999999999
Q ss_pred EEEEeEEEEcceEeccc----eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCC
Q 010466 160 FFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 235 (510)
Q Consensus 160 ~~~~D~v~~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~ 235 (510)
.+++|+|++|+..++++ +....+..|.....+||||||++..+.....|++.+|++||.|+.++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999887 22233444555678999999999887777888999999999999999999998754333
Q ss_pred CCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCc
Q 010466 236 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 315 (510)
Q Consensus 236 ~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~ 315 (510)
..|+|+|||+|++++.|++.|+|+...++|.|.+++|+|++..+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 4899999999999999999999998889999999999999998776666788999999999999998665431
Q ss_pred ccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHH
Q 010466 316 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 395 (510)
Q Consensus 316 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (510)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeeccc
Q 010466 396 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 475 (510)
Q Consensus 396 ~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~ 475 (510)
|.+||+....+|+|+|+|+|+.++|+|++|+++..++....|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 346888777899999999999999999999998665555789999988765
Q ss_pred CCCCCCeeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 476 APPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 476 ~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
....++.||||++|||++|+|||++++|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 444556899999999999999999999999996
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=9.3e-60 Score=476.82 Aligned_cols=322 Identities=45% Similarity=0.924 Sum_probs=280.9
Q ss_pred ceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCCccCCCCCceeECCcEEEEEecCceEEEE
Q 010466 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (510)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~ 160 (510)
|.|+.+..|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 467889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEeEEEEcceEeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCC
Q 010466 161 FSEDHVKIGDLVVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 237 (510)
Q Consensus 161 ~~~D~v~~g~~~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~ 237 (510)
+++|+|++|+..+... ........|.....+||||||++..+.....|++++|++||.|++++||+||.+.++....
T Consensus 81 ~~~D~v~~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~ 160 (326)
T cd05487 81 LSQDIVTVGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLG 160 (326)
T ss_pred EeeeEEEECCEEeeEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCC
Confidence 9999999999877533 2222233444556899999999887777788999999999999999999999876433457
Q ss_pred cEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCccc
Q 010466 238 GEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIV 317 (510)
Q Consensus 238 G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~ 317 (510)
|+|+|||+|+++|.|+++|+|+...++|.|.++++++++..+. ...+..++|||||+++++|.++++++++++++..
T Consensus 161 G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~-- 237 (326)
T cd05487 161 GEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE-- 237 (326)
T ss_pred cEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc--
Confidence 9999999999999999999999888999999999999998774 3456789999999999999999999999987641
Q ss_pred ccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHH
Q 010466 318 SQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQ 397 (510)
Q Consensus 318 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (510)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCC
Q 010466 398 LKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 477 (510)
Q Consensus 398 ~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 477 (510)
..+.|.+||+....+|+|+|+|+|.+++|++++|+++..+.....|+++|+..+.+.
T Consensus 238 -----------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~ 294 (326)
T cd05487 238 -----------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPP 294 (326)
T ss_pred -----------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCC
Confidence 135688999988889999999999999999999999866555678999999876544
Q ss_pred CCCCeeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 478 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 478 ~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
+.++.||||++|||++|+|||++++|||||+|
T Consensus 295 ~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 295 PTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 45568999999999999999999999999986
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6e-60 Score=476.33 Aligned_cols=312 Identities=50% Similarity=0.932 Sum_probs=273.7
Q ss_pred EEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEEEeEEEEc
Q 010466 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (510)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~~g 169 (510)
|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 799999999999999999999999999999996 4579989999999999999999999999999999999999999999
Q ss_pred ceEeccc--e--eeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEEcCc
Q 010466 170 DLVVKDQ--A--TREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 245 (510)
Q Consensus 170 ~~~~~~~--~--~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 245 (510)
+..++++ . ....+..|.....+||||||++..+.....|++++|++||.|+.++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 9999888 2 22233345556789999999998877778889999999999999999999987643345799999999
Q ss_pred CCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhh
Q 010466 246 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVV 325 (510)
Q Consensus 246 d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~ 325 (510)
|++++.|++.|+|+.+.++|.|.+++|+|+++.+. ......++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887653
Q ss_pred hhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHH
Q 010466 326 SQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQE 405 (510)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 405 (510)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEE
Q 010466 406 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWIL 485 (510)
Q Consensus 406 ~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 485 (510)
...+.|.+||+....+|+|+|+|+|+.++|+|++|++.....+...|+++|+..+..+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998788999999999999999999999875333456899999887654445568999
Q ss_pred ChhhhcceEEEEECCCCeEEEEE
Q 010466 486 GDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 486 G~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
|++|||++|+|||++++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=8.5e-59 Score=470.04 Aligned_cols=323 Identities=59% Similarity=1.062 Sum_probs=282.2
Q ss_pred EeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCCccCCCCCceeECCcEEEEEecCceEE
Q 010466 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (510)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~ 158 (510)
.+|.|+.+..|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47889999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEeEEEEcceEeccc----eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCC
Q 010466 159 GFFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 234 (510)
Q Consensus 159 G~~~~D~v~~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~ 234 (510)
|.+++|++++|+..++++ +....+..|.....+||||||++..+.....|++.+|++||.|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 999999999999998887 2223333455566899999999988777788899999999999999999999876443
Q ss_pred CCCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCC
Q 010466 235 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314 (510)
Q Consensus 235 ~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~ 314 (510)
...|+|+|||+|++++.|++.|+|+.+.++|.|.++++.+++..+ ......++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 357999999999999999999999998999999999999999876 345678999999999999999999999988654
Q ss_pred cccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHH
Q 010466 315 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 394 (510)
Q Consensus 315 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (510)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecc
Q 010466 395 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 474 (510)
Q Consensus 395 ~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~ 474 (510)
...+.|.+||+....+|+|+|+|+|+++.|+|++|+++....+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0124588999987789999999999999999999999876555678999898766
Q ss_pred cCCCCCCeeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 475 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 475 ~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
+++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5444556899999999999999999999999984
No 7
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.7e-58 Score=480.25 Aligned_cols=321 Identities=34% Similarity=0.646 Sum_probs=276.0
Q ss_pred CCccEEeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecC
Q 010466 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (510)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~ 154 (510)
.....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 366889999999999999999999999999999999999999999996 5679999999999999999999999999999
Q ss_pred ceEEEEEEEeEEEEcceEeccc---eeeecC--ccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEec
Q 010466 155 GAISGFFSEDHVKIGDLVVKDQ---ATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 229 (510)
Q Consensus 155 gs~~G~~~~D~v~~g~~~~~~~---~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~ 229 (510)
|++.|.+++|+|++|+..++.+ .....+ ..+.....+||||||++..+.....|++.+|.+||.|++++||+||.
T Consensus 204 GsvsG~~~~DtVtiG~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988866 122212 12334468999999999888777889999999999999999999998
Q ss_pred CCCCCCCCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHH
Q 010466 230 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 309 (510)
Q Consensus 230 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~ 309 (510)
+... ..|.|+|||+|++++.|++.|+|+.+..+|.|.++ +.+++... ....++|||||+++++|+++++++.+
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHHH
Confidence 6532 37999999999999999999999988899999998 47776432 46789999999999999999999999
Q ss_pred HhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHH
Q 010466 310 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 389 (510)
Q Consensus 310 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (510)
++++..
T Consensus 357 ~l~~~~-------------------------------------------------------------------------- 362 (453)
T PTZ00147 357 SLDVFK-------------------------------------------------------------------------- 362 (453)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 886530
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEec
Q 010466 390 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISG 469 (510)
Q Consensus 390 ~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~ 469 (510)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+....+.....|+++
T Consensus 363 ----------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 363 ----------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred ----------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 0 113457889986 5799999999999999999999986554455689998
Q ss_pred eeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 470 FSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 470 ~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
+++.+. ..+.||||++|||++|+|||++++|||||+|+
T Consensus 413 i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 886542 23579999999999999999999999999985
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-58 Score=465.57 Aligned_cols=312 Identities=47% Similarity=0.897 Sum_probs=273.9
Q ss_pred eceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEE
Q 010466 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (510)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~ 160 (510)
||.|+.+..|+++|.||||||++.|+|||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 788999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEeEEEEcceEeccc---eeeec-CccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010466 161 FSEDHVKIGDLVVKDQ---ATREP-SLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 236 (510)
Q Consensus 161 ~~~D~v~~g~~~~~~~---~~~~~-~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~ 236 (510)
+++|+|++|+..++++ ..... +..+.....+||||||++..+.....|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 9999999999998887 22222 2222233579999999998877777889999999999999999999987642 3
Q ss_pred CcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcc
Q 010466 237 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 316 (510)
Q Consensus 237 ~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~ 316 (510)
.|+|+|||+|++++.|++.|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999888999999999999999875 3356789999999999999999999999886540
Q ss_pred cccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHH
Q 010466 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 396 (510)
Q Consensus 317 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (510)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccC
Q 010466 397 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 476 (510)
Q Consensus 397 ~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~ 476 (510)
...+.|.+||+....+|.|+|+|+|+.|+|+|++|+.+. ...|++.|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 123568899998888999999999999999999999864 368999887532
Q ss_pred CCCCCeeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 477 PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 477 ~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
..+.||||++|||++|+|||++++||||||
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 246799999999999999999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.2e-58 Score=463.59 Aligned_cols=316 Identities=50% Similarity=0.913 Sum_probs=276.6
Q ss_pred EeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEE
Q 010466 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (510)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G 159 (510)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4788999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEeEEEEcceEeccc----eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCC
Q 010466 160 FFSEDHVKIGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 235 (510)
Q Consensus 160 ~~~~D~v~~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~ 235 (510)
.+++|++++++..++++ +....+..+.....+||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999887 22222333445567999999999887767778889999999999999999999753 2
Q ss_pred CCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCc
Q 010466 236 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 315 (510)
Q Consensus 236 ~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~ 315 (510)
..|.|+|||+|++++.|++.|+|+...++|.|.+++|+||+..+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999998889999999999999987753 45689999999999999999999999886540
Q ss_pred ccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHH
Q 010466 316 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 395 (510)
Q Consensus 316 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (510)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeeccc
Q 010466 396 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 475 (510)
Q Consensus 396 ~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~ 475 (510)
...+.|.+||+....+|.|+|+|+|+++.|+|++|+++. .+.|++.+...+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcC
Confidence 124568899998778999999999999999999999853 2579999987654
Q ss_pred CCCCCCeeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 476 APPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 476 ~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
+...++.||||++|||++|++||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433445899999999999999999999999996
No 10
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-57 Score=472.96 Aligned_cols=321 Identities=32% Similarity=0.659 Sum_probs=274.2
Q ss_pred CCccEEeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecC
Q 010466 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (510)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~ 154 (510)
.....++|.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 366789999999999999999999999999999999999999999996 4579999999999999999999999999999
Q ss_pred ceEEEEEEEeEEEEcceEeccc--ee-eec--CccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEec
Q 010466 155 GAISGFFSEDHVKIGDLVVKDQ--AT-REP--SLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 229 (510)
Q Consensus 155 gs~~G~~~~D~v~~g~~~~~~~--~~-~~~--~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~ 229 (510)
|++.|.+++|+|++|+..++.+ .. ... ...+....++||||||++..+.....|++++|++||.|++++||+||.
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred ceEEEEEEEEEEEECCEEEccEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999988766 11 111 122344568999999999887777889999999999999999999998
Q ss_pred CCCCCCCCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHH
Q 010466 230 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 309 (510)
Q Consensus 230 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~ 309 (510)
+.. ...|+|+|||+|+++|.|++.|+|+....+|.|.++ +.+|.... ....+++||||+++++|+++++++.+
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 237999999999999999999999988899999998 66664432 45679999999999999999999999
Q ss_pred HhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHH
Q 010466 310 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 389 (510)
Q Consensus 310 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (510)
++++..
T Consensus 356 ~l~~~~-------------------------------------------------------------------------- 361 (450)
T PTZ00013 356 NLNVIK-------------------------------------------------------------------------- 361 (450)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 886541
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEec
Q 010466 390 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISG 469 (510)
Q Consensus 390 ~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~ 469 (510)
. ...+.|.++|+. ..+|+|+|.|+|.+++|+|++|+..........|++.
T Consensus 362 ----------------------------~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~ 411 (450)
T PTZ00013 362 ----------------------------V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMIT 411 (450)
T ss_pred ----------------------------c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEE
Confidence 0 123458899985 5789999999999999999999976443344689998
Q ss_pred eeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 470 FSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 470 ~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
+.+.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 412 i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 412 MLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 876542 33579999999999999999999999999985
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=9.2e-58 Score=460.93 Aligned_cols=313 Identities=45% Similarity=0.889 Sum_probs=273.3
Q ss_pred CceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEEEeEE
Q 010466 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (510)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v 166 (510)
|..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|++.|++|++.|.+++|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579989999999999999999999999999999999999999
Q ss_pred EEcceEeccc---e-eeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEE
Q 010466 167 KIGDLVVKDQ---A-TREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 242 (510)
Q Consensus 167 ~~g~~~~~~~---~-~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 242 (510)
++|+..++++ + ....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|.|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999988 2 2222333444567999999999887777889999999999999999999998753 223799999
Q ss_pred cCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccc
Q 010466 243 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECK 322 (510)
Q Consensus 243 Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~ 322 (510)
||+|++++.|++.|+|+....+|.|.+++|+|++..+..+..+..++|||||+++++|++++++|++.+++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999998899999999999999987655566789999999999999999999999887640
Q ss_pred hhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhh
Q 010466 323 AVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQ 402 (510)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (510)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCCCC-CC
Q 010466 403 TQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPR-GP 481 (510)
Q Consensus 403 t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~-~~ 481 (510)
...+.|.+||+....+|+|+|+|+|++++++|++|+... .+.|+++|+..+.+... .+
T Consensus 232 -----------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 232 -----------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred -----------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 123568999998888999999999999999999999863 36899888765433222 35
Q ss_pred eeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 482 LWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 482 ~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.4e-53 Score=428.42 Aligned_cols=312 Identities=39% Similarity=0.740 Sum_probs=272.3
Q ss_pred eEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEEEeEEEE
Q 010466 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (510)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~~ 168 (510)
+|+++|.||||+|+++|++||||+++||++..|..+..|.....|++++|+|++..++.+.+.|++|+++|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973335788899999999999999999999999999999999999999
Q ss_pred cceEeccc----eeeecCccccccccceEEeeccccccCCC-CCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEEc
Q 010466 169 GDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243 (510)
Q Consensus 169 g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 243 (510)
++..+.++ +....+..+.....+||||||++..+... .++++++|++||.|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999877 22223444456678999999988776654 788999999999999999999999875 347999999
Q ss_pred CcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccch
Q 010466 244 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKA 323 (510)
Q Consensus 244 g~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~ 323 (510)
|+|++++.|++.|+|+...++|.+.+++|.+++.... ......++||||++++++|.++++.|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~-~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVF-SSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEE-EEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCcccccccccccccccccccccc-cccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 9999999999999999999999999999999999332 3456789999999999999999999999998751
Q ss_pred hhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhh
Q 010466 324 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQT 403 (510)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 403 (510)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCee
Q 010466 404 QERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 483 (510)
Q Consensus 404 ~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 483 (510)
..+.|.+||+....+|.|+|.|++.+++|+|++|+.+........|+..|..++. ....+.+
T Consensus 230 -----------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 230 -----------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp -----------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred -----------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 0167899999888899999999999999999999998776655699999998654 4455789
Q ss_pred EEChhhhcceEEEEECCCCeEEEEEc
Q 010466 484 ILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 484 ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-49 Score=409.19 Aligned_cols=314 Identities=29% Similarity=0.489 Sum_probs=243.6
Q ss_pred ceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEEEeEEE
Q 010466 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (510)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (510)
..|+++|.||||+|++.|+|||||+++||+|..|. ..++.|+|++|+||+..++.|++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred Ecce---Eeccc-ee-eecCccc-cccccceEEeeccccccC--CCCCcHHHHHHHcCCCCCCeEEEEecCCC-------
Q 010466 168 IGDL---VVKDQ-AT-REPSLTF-LLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA------- 232 (510)
Q Consensus 168 ~g~~---~~~~~-~~-~~~~~~~-~~~~~~GIlGLg~~~~s~--~~~~~~l~~l~~qg~i~~~~FSl~l~~~~------- 232 (510)
|++. .+... +. ......+ .....+||||||++.++. ...+|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~~~ 155 (364)
T cd05473 77 IPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSA 155 (364)
T ss_pred ECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccccc
Confidence 9853 11111 11 1111112 123579999999998764 3467899999999987 579999986321
Q ss_pred CCCCCcEEEEcCcCCCCcccceeEEeccCccceEEEeceEEEcCeeeeecCC---CeeEEEcCCCcCcccCHHHHHHHHH
Q 010466 233 DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQVNH 309 (510)
Q Consensus 233 ~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDTGtt~i~lP~~~~~~l~~ 309 (510)
.....|+|+|||+|++++.|++.|+|+....+|.|.+++|.|++..+..... ...++|||||+++++|++++++|.+
T Consensus 156 ~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~ 235 (364)
T cd05473 156 SGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVD 235 (364)
T ss_pred ccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHH
Confidence 1224799999999999999999999998889999999999999988764322 2469999999999999999999999
Q ss_pred HhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHH
Q 010466 310 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 389 (510)
Q Consensus 310 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (510)
+++++... +
T Consensus 236 ~l~~~~~~------------------------~----------------------------------------------- 244 (364)
T cd05473 236 AIKAASLI------------------------E----------------------------------------------- 244 (364)
T ss_pred HHHhhccc------------------------c-----------------------------------------------
Confidence 98764100 0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhcccCCCC-CCceeeeCCCCC-----CCCcEEEEECC------EEEeeCcccceee
Q 010466 390 AVVWMQNQLKQNQTQERILNYVNELCDRLPSP-MGESAVDCSRLS-----SLPIVSFTIGG------KIFDLTPDQYILK 457 (510)
Q Consensus 390 ~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~-~~~~~~~c~~~~-----~~P~i~f~~~g------~~~~i~~~~y~~~ 457 (510)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+..
T Consensus 245 ---------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~ 297 (364)
T cd05473 245 ---------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRP 297 (364)
T ss_pred ---------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhh
Confidence 00011 123456786432 58999999964 4789999999986
Q ss_pred ecC-CCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 458 VGE-GDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 458 ~~~-~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
... .....|+. +.. ....+.||||+.|||++|+|||++++|||||+++
T Consensus 298 ~~~~~~~~~C~~-~~~----~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 298 VEDHGTQLDCYK-FAI----SQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hccCCCcceeeE-Eee----ecCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 432 22468975 211 1123469999999999999999999999999874
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.7e-49 Score=393.07 Aligned_cols=215 Identities=35% Similarity=0.541 Sum_probs=184.3
Q ss_pred EEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeE-CCcEEEEEecCce-EEEEEEEeEEE
Q 010466 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (510)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~-~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (510)
|+++|+||||||++.|++||||+++||+|..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33455677899999999987 4789999999997 79999999999
Q ss_pred EcceEeccc----eeeecCccccccccceEEeeccccccCC---CCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 010466 168 IGDLVVKDQ----ATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 240 (510)
Q Consensus 168 ~g~~~~~~~----~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L 240 (510)
+|+..++++ +.......+.....+||||||++..+.. ..++++++|.+|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 999999888 2222222344567899999999876542 35678999999964 79999999863 27999
Q ss_pred EEcCcCCCCcccceeEEeccC-ccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhc
Q 010466 241 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 312 (510)
Q Consensus 241 ~fGg~d~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~ 312 (510)
+|||+|++++.|++.|+|+.. .++|.|++++|.|++.... ......++|||||+++++|.+++++|.+++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999988443 3467889999999999999999999999884
No 15
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=9.4e-49 Score=408.22 Aligned_cols=301 Identities=23% Similarity=0.384 Sum_probs=227.7
Q ss_pred cCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccC--CCCCccCCCCCceeECC------------------
Q 010466 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (510)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~--~~~~y~p~~SsT~~~~~------------------ 145 (510)
.+.+|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999996 676 45799999999998743
Q ss_pred --cEEEEEecCce-EEEEEEEeEEEEcce-----Eeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHH
Q 010466 146 --KSADIHYGTGA-ISGFFSEDHVKIGDL-----VVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 214 (510)
Q Consensus 146 --~~~~~~Y~~gs-~~G~~~~D~v~~g~~-----~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~ 214 (510)
|.|.+.|++|+ +.|.+++|+|+|++. .++++ +.......|. ...+||||||+...+ ++.||.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~-~~~~GilGLG~~~~S------l~sql~ 230 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD-EKGSGIVGLGGGPLS------LISQLG 230 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc-CCCceeEecCCCCcc------HHHHhh
Confidence 79999999998 589999999999873 35555 2122221232 247899999998776 555555
Q ss_pred HcCCCCCCeEEEEecCCCC-CCCCcEEEEcCcCCCCccc-ceeEEeccC---ccceEEEeceEEEcCeeeeecCC-----
Q 010466 215 NQGLVNEPVFSFWFNRNAD-EEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCAG----- 284 (510)
Q Consensus 215 ~qg~i~~~~FSl~l~~~~~-~~~~G~L~fGg~d~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~~~~~~~~~~----- 284 (510)
.+ +. ++||+||.+..+ ....|.|+||+. .++.+ .+.|+|+.. ..+|.|.+++|+||++.+.++..
T Consensus 231 ~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~ 305 (431)
T PLN03146 231 SS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGV 305 (431)
T ss_pred Hh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccC
Confidence 43 44 599999975322 234799999984 44444 488999863 46899999999999998764322
Q ss_pred -CeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccc
Q 010466 285 -GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMG 363 (510)
Q Consensus 285 -~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~ 363 (510)
...+||||||++++||+++|++|.+++...- ... +
T Consensus 306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~----------------------~~~-~--------------------- 341 (431)
T PLN03146 306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAI----------------------GGE-R--------------------- 341 (431)
T ss_pred CCCcEEEeCCccceecCHHHHHHHHHHHHHHh----------------------ccc-c---------------------
Confidence 2479999999999999999999988775330 000 0
Q ss_pred cccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCC---CCCCcEEE
Q 010466 364 IESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL---SSLPIVSF 440 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~---~~~P~i~f 440 (510)
.... ..+..+|... ..+|+|+|
T Consensus 342 ------------------------------------------------------~~~~-~~~~~~C~~~~~~~~~P~i~~ 366 (431)
T PLN03146 342 ------------------------------------------------------VSDP-QGLLSLCYSSTSDIKLPIITA 366 (431)
T ss_pred ------------------------------------------------------CCCC-CCCCCccccCCCCCCCCeEEE
Confidence 0000 0011233211 36899999
Q ss_pred EECCEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 441 TIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 441 ~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
+|+|+++.++|++|++...++ ..|+..+. ..+.||||+.|||++|++||++++|||||++
T Consensus 367 ~F~Ga~~~l~~~~~~~~~~~~--~~Cl~~~~-------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 367 HFTGADVKLQPLNTFVKVSED--LVCFAMIP-------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EECCCeeecCcceeEEEcCCC--cEEEEEec-------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 999999999999999975443 68986332 1236999999999999999999999999986
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.5e-48 Score=392.09 Aligned_cols=279 Identities=28% Similarity=0.460 Sum_probs=227.9
Q ss_pred ceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCC--CCCccCCCCCceeEC----------------CcEEE
Q 010466 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYRSGRSSTYKKN----------------GKSAD 149 (510)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~--~~~y~p~~SsT~~~~----------------~~~~~ 149 (510)
+.|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 5653 578999999999863 57899
Q ss_pred EEecCce-EEEEEEEeEEEEcceEecc-------c---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCC
Q 010466 150 IHYGTGA-ISGFFSEDHVKIGDLVVKD-------Q---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGL 218 (510)
Q Consensus 150 ~~Y~~gs-~~G~~~~D~v~~g~~~~~~-------~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~ 218 (510)
+.|++|+ +.|.+++|+|+||+..+.+ + +.......|.....+||||||+...+. ..+.+..|++++.
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~~ 156 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNG--LPTPIILLFTKRP 156 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccc--cCchhHHHHHhcc
Confidence 9999997 7999999999999876531 1 111122234445679999999987542 2234445777777
Q ss_pred CCC--CeEEEEecCCCCCCCCcEEEEcCcCCCCcc----------cceeEEeccCccceEEEeceEEEcCee-eeecCCC
Q 010466 219 VNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQT-TGFCAGG 285 (510)
Q Consensus 219 i~~--~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~~~~-~~~~~~~ 285 (510)
+.. ++||+||++. .|.|+|||+|+.++. +++.|+|+....+|.|.+++|+++++. .......
T Consensus 157 ~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 157 KLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred cccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccC
Confidence 664 9999999864 799999999999987 789999998889999999999999886 1113467
Q ss_pred eeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccc
Q 010466 286 CAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIE 365 (510)
Q Consensus 286 ~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~ 365 (510)
..++|||||++++||++++++|.+
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~-------------------------------------------------------- 255 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINN-------------------------------------------------------- 255 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHh--------------------------------------------------------
Confidence 789999999999999999988754
Q ss_pred cccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEEC-C
Q 010466 366 SVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-G 444 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~-g 444 (510)
.+|+|+|.|+ |
T Consensus 256 --------------------------------------------------------------------~~P~i~~~f~~g 267 (326)
T cd06096 256 --------------------------------------------------------------------FFPTITIIFENN 267 (326)
T ss_pred --------------------------------------------------------------------hcCcEEEEEcCC
Confidence 2289999997 8
Q ss_pred EEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 445 KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 445 ~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
++++++|++|+++.... .|...+.. ..+.||||++|||++|+|||++++|||||++
T Consensus 268 ~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 268 LKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred cEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 99999999999875432 47665542 2357999999999999999999999999987
No 17
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-48 Score=399.23 Aligned_cols=316 Identities=44% Similarity=0.791 Sum_probs=253.9
Q ss_pred cEEeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCC-CCC-ccCCCCCceeECCcE--------
Q 010466 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS-------- 147 (510)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~-~~~-y~p~~SsT~~~~~~~-------- 147 (510)
...++..+.+.+|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3455666778899999999999999999999999999999999962 6864 444 999999999997743
Q ss_pred ----------EEEEecCc-eEEEEEEEeEEEEcc---eEeccc----eeeecCccccc-cccceEEeeccccccCCCCCc
Q 010466 148 ----------ADIHYGTG-AISGFFSEDHVKIGD---LVVKDQ----ATREPSLTFLL-AKFDGILGLGFQEISVGKAVP 208 (510)
Q Consensus 148 ----------~~~~Y~~g-s~~G~~~~D~v~~g~---~~~~~~----~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~ 208 (510)
|.+.|++| +++|.+++|+|++++ ..++++ ...+.+. +.. ...+||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 489999999999998 555555 2223332 333 578999999999988544432
Q ss_pred HHHHHHHcCCCCCCeEEEEecCCCCC-CCCcEEEEcCcCCCCcccceeEEeccCcc--ceEEEeceEEEcCee----eee
Q 010466 209 VWYNMVNQGLVNEPVFSFWFNRNADE-EEGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TGF 281 (510)
Q Consensus 209 ~l~~l~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~d~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~~ 281 (510)
. .... .++||+||.+.... ..+|.|+||++|+.++.+.+.|+|+.... +|.+.+.+|+|+++. ..+
T Consensus 192 ~------~~~~-~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 S------FYNA-INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred c------ccCC-ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 2 2211 23899999987533 24899999999999999999999998877 999999999999843 222
Q ss_pred cCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccc
Q 010466 282 CAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVS 361 (510)
Q Consensus 282 ~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~ 361 (510)
+.+...+++||||++++||.++|++|.++++++.
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3335889999999999999999999999998750
Q ss_pred cccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCC----CCc
Q 010466 362 MGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSS----LPI 437 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~----~P~ 437 (510)
+.....+.+.++|..... +|.
T Consensus 299 -------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 -------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred -------------------------------------------------------eccccCCceeeecccCCCCcccCCc
Confidence 001335667888877666 999
Q ss_pred EEEEEC-CEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECC-CCeEEEEEc
Q 010466 438 VSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYS-NMRVGFAEA 509 (510)
Q Consensus 438 i~f~~~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~-~~~iGfa~a 509 (510)
|+|+|+ |+.|.+++++|+++....... |++.+...+.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 999998 899999999999987655222 99988754421 68999999999999999999 999999985
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=9.2e-47 Score=376.92 Aligned_cols=276 Identities=30% Similarity=0.546 Sum_probs=233.9
Q ss_pred eEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCc-eEEEEEEEeEEE
Q 010466 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (510)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~v~ 167 (510)
.|+++|.||||+|++.|++||||+++||+ .|++.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999997 578899995 589999999999
Q ss_pred EcceEeccc--eeeecCccccccccceEEeeccccccC-----CCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 010466 168 IGDLVVKDQ--ATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 240 (510)
Q Consensus 168 ~g~~~~~~~--~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L 240 (510)
+++..++++ ..... ....+||||||++..+. ...++++++|.+||.|++++||+||.+.. ...|.|
T Consensus 53 ~g~~~~~~~~fg~~~~-----~~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g~l 125 (295)
T cd05474 53 IGGATVKNLQFAVANS-----TSSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTGSI 125 (295)
T ss_pred ECCeEecceEEEEEec-----CCCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCceeE
Confidence 999988877 22211 13469999999988743 34567999999999999999999998753 237999
Q ss_pred EEcCcCCCCcccceeEEeccCc------cceEEEeceEEEcCeeee--ecCCCeeEEEcCCCcCcccCHHHHHHHHHHhc
Q 010466 241 VFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 312 (510)
Q Consensus 241 ~fGg~d~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~ 312 (510)
+|||+|+.++.+++.|+|+... .+|.|.+++|++++..+. .......++|||||++++||.+++++|.++++
T Consensus 126 ~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~ 205 (295)
T cd05474 126 LFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLG 205 (295)
T ss_pred EEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhC
Confidence 9999999999999999999664 789999999999998753 23456789999999999999999999999987
Q ss_pred CCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHH
Q 010466 313 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVV 392 (510)
Q Consensus 313 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (510)
+..
T Consensus 206 ~~~----------------------------------------------------------------------------- 208 (295)
T cd05474 206 ATY----------------------------------------------------------------------------- 208 (295)
T ss_pred CEE-----------------------------------------------------------------------------
Confidence 651
Q ss_pred HHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECCEEEeeCcccceeeecC--CCCceeEece
Q 010466 393 WMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGE--GDAAQCISGF 470 (510)
Q Consensus 393 ~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g~~~~i~~~~y~~~~~~--~~~~~C~~~~ 470 (510)
....+.|.++|+.... |+|+|+|+|.+++||+++|+++... .....|++.|
T Consensus 209 --------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i 261 (295)
T cd05474 209 --------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGI 261 (295)
T ss_pred --------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEE
Confidence 0113568899987666 9999999999999999999987542 3457899888
Q ss_pred eecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 471 SALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 471 ~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
+..+ .+.||||++|||++|++||++++|||||+|
T Consensus 262 ~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 262 QPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 8543 157999999999999999999999999997
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.6e-46 Score=374.25 Aligned_cols=285 Identities=25% Similarity=0.457 Sum_probs=215.5
Q ss_pred eEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCce-EEEEEEEeEEE
Q 010466 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (510)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (510)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999987544 67999999998 58999999999
Q ss_pred Ecce-Eeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEEc
Q 010466 168 IGDL-VVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 243 (510)
Q Consensus 168 ~g~~-~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 243 (510)
||+. .++++ +.......+ ...+||||||++..+ +..++..+ ..++||+||.+.. ....|+|+||
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~fG 124 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGLF--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSFG 124 (299)
T ss_pred eCCCCccCCEEEECCccCCCcc--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEeC
Confidence 9987 77766 212221112 267999999987765 44455544 3589999998743 1337999999
Q ss_pred CcCCCCcccceeEEeccC----ccceEEEeceEEEcCeeeeec---CCCeeEEEcCCCcCcccCHHHHHHHHHHhcCCcc
Q 010466 244 GMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 316 (510)
Q Consensus 244 g~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~---~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~ 316 (510)
|+|++ .|++.|+|+.. ..+|.|++++|+|+++.+... .....++|||||+++++|+++|++|.+++.++..
T Consensus 125 g~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~ 202 (299)
T cd05472 125 AAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA 202 (299)
T ss_pred Ccccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc
Confidence 99998 89999999965 368999999999999987642 2356799999999999999999999998865400
Q ss_pred cccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHH
Q 010466 317 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 396 (510)
Q Consensus 317 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (510)
.+ . ..+ +
T Consensus 203 ----------~~---------~-~~~-------~---------------------------------------------- 209 (299)
T cd05472 203 ----------AY---------P-RAP-------G---------------------------------------------- 209 (299)
T ss_pred ----------cC---------C-CCC-------C----------------------------------------------
Confidence 00 0 000 0
Q ss_pred HhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEeeCcccceeeecCCCCceeEeceeeccc
Q 010466 397 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDV 475 (510)
Q Consensus 397 ~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~ 475 (510)
....+.|+. ++|.....+|+|+|+|+ |++++|+|++|++... .....|+. +...+
T Consensus 210 ------------~~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~- 265 (299)
T cd05472 210 ------------FSILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS- 265 (299)
T ss_pred ------------CCCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC-
Confidence 000001221 22333357999999996 8999999999998432 23468974 44321
Q ss_pred CCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 476 APPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 476 ~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
...+.||||+.|||++|+|||++++|||||++.
T Consensus 266 --~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~ 298 (299)
T cd05472 266 --DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGG 298 (299)
T ss_pred --CCCCCEEEchHHccceEEEEECCCCEEeEecCC
Confidence 234579999999999999999999999999863
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.8e-44 Score=356.29 Aligned_cols=224 Identities=46% Similarity=0.863 Sum_probs=192.2
Q ss_pred EEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCC--ccCCCCCceeECCcEEEEEecCceEEEEEEEeEEE
Q 010466 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (510)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~--y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (510)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....|.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 223333333 89999999999999999999999999999999999
Q ss_pred EcceEeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEEcC
Q 010466 168 IGDLVVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGG 244 (510)
Q Consensus 168 ~g~~~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg 244 (510)
|++..++++ +.......+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+|||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg 159 (283)
T cd05471 80 IGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGG 159 (283)
T ss_pred ECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcc
Confidence 999988877 22222222445678999999999877667788999999999999999999999853223489999999
Q ss_pred cCCCCcccceeEEeccC--ccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcCC
Q 010466 245 MDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 314 (510)
Q Consensus 245 ~d~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~ 314 (510)
+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++||||+++++||.+++++|++++.+.
T Consensus 160 ~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 160 IDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred cCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 99999999999999977 78999999999999974222456789999999999999999999999999875
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-43 Score=346.04 Aligned_cols=245 Identities=28% Similarity=0.512 Sum_probs=201.7
Q ss_pred eEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCce-EEEEEEEeEEE
Q 010466 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (510)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (510)
+|+++|+||||+|++.|++||||+++||+| |.+.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 499999999999999999999999999985 45789999775 79999999999
Q ss_pred Ecce--Eeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEE
Q 010466 168 IGDL--VVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 242 (510)
Q Consensus 168 ~g~~--~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 242 (510)
|++. .++++ +...... +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+|
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~f 122 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLIL 122 (265)
T ss_pred ecCCCCccCCEEEEecccccC-CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEEE
Confidence 9998 67777 2222221 445678999999987654 667777766 799999987532334899999
Q ss_pred cCcCCCCcccceeEEeccC----ccceEEEeceEEEcCeeeee--------cCCCeeEEEcCCCcCcccCHHHHHHHHHH
Q 010466 243 GGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTTIITQVNHA 310 (510)
Q Consensus 243 Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aiiDTGtt~i~lP~~~~~~l~~~ 310 (510)
|++|++ +.+++.|+|+.. .++|.+++++|+|+++.+.+ ......++|||||+++++|++
T Consensus 123 Gg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~-------- 193 (265)
T cd05476 123 GDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP-------- 193 (265)
T ss_pred CCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc--------
Confidence 999999 899999999965 57999999999999998752 235678999999999999852
Q ss_pred hcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHH
Q 010466 311 IGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMA 390 (510)
Q Consensus 311 l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (510)
T Consensus 194 -------------------------------------------------------------------------------- 193 (265)
T cd05476 194 -------------------------------------------------------------------------------- 193 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEeeCcccceeeecCCCCceeEec
Q 010466 391 VVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISG 469 (510)
Q Consensus 391 ~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~-g~~~~i~~~~y~~~~~~~~~~~C~~~ 469 (510)
.+|+|+|.|+ |+++.+++++|+.... ....|++.
T Consensus 194 -------------------------------------------~~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~~ 228 (265)
T cd05476 194 -------------------------------------------AYPDLTLHFDGGADLELPPENYFVDVG--EGVVCLAI 228 (265)
T ss_pred -------------------------------------------ccCCEEEEECCCCEEEeCcccEEEECC--CCCEEEEE
Confidence 1288999998 8999999999998643 34689754
Q ss_pred eeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 470 FSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 470 ~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
+. ....+.||||++|||++|++||++++|||||++.
T Consensus 229 ~~-----~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 229 LS-----SSSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred ec-----CCCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 32 1245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.6e-43 Score=345.97 Aligned_cols=254 Identities=22% Similarity=0.430 Sum_probs=203.8
Q ss_pred ceEEEEEeecCCCceEEEEecCCCCceeeeCC-CCCCCcccCCCCCccCCCCCceeECCcEEEEEecCc-eEEEEEEEeE
Q 010466 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDH 165 (510)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~-~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~ 165 (510)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|++| ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 675 55 47899999965 5799999999
Q ss_pred EEEcc----eEeccc---ee-eecCc-cccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010466 166 VKIGD----LVVKDQ---AT-REPSL-TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 236 (510)
Q Consensus 166 v~~g~----~~~~~~---~~-~~~~~-~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl~l~~~~~~~~ 236 (510)
|+++. ..+.++ +. ...+. .+.....+||||||+...+ ++++|.+++.| +++||+||.+..
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~---- 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG---- 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----
Confidence 99963 344454 21 12111 1233467999999987654 78999999999 899999998632
Q ss_pred CcEEEEcCcCCCCcccceeEEeccCc---cceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHHHHHhcC
Q 010466 237 GGEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 313 (510)
Q Consensus 237 ~G~L~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~l~~ 313 (510)
.|.|+|| |..++.+++.|+|+.+. .+|.|++.+|+||++.. ......++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 55667889999999764 79999999999999864 34567899999999999986322
Q ss_pred CcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHH
Q 010466 314 TGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVW 393 (510)
Q Consensus 314 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (510)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECC----EEEeeCcccceeeecCCCCceeEec
Q 010466 394 MQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG----KIFDLTPDQYILKVGEGDAAQCISG 469 (510)
Q Consensus 394 ~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g----~~~~i~~~~y~~~~~~~~~~~C~~~ 469 (510)
+|+|+|.|++ ++++|+|++|++.... ...|++.
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 5789999976 7999999999987443 3589887
Q ss_pred eeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEcC
Q 010466 470 FSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 510 (510)
Q Consensus 470 ~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a~ 510 (510)
+...+. ...+.||||+.|||++|++||++++|||||++.
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 654321 224579999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.2e-39 Score=332.55 Aligned_cols=311 Identities=16% Similarity=0.242 Sum_probs=221.0
Q ss_pred ecCCCce-EEEEecCCCCceeeeCCCCCC---------CcccCCCCCccCCC------CCceeECCcEEEEE-ecCce-E
Q 010466 96 IGTPPQN-FTVIFDTGSSNLWVPSSKCYF---------SIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA-I 157 (510)
Q Consensus 96 iGtP~Q~-~~v~lDTGSs~~Wv~~~~C~~---------~~~C~~~~~y~p~~------SsT~~~~~~~~~~~-Y~~gs-~ 157 (510)
.|||-.+ +.|++||||+++||+|.+|.. ...|..+..|++.+ ++...+..|.|... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 999999999999998764431 45676666665542 22333345777654 77885 6
Q ss_pred EEEEEEeEEEEcc--------eEeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCCCCCCeEEE
Q 010466 158 SGFFSEDHVKIGD--------LVVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSF 226 (510)
Q Consensus 158 ~G~~~~D~v~~g~--------~~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~i~~~~FSl 226 (510)
.|.+++|+|+|+. ..+.++ +.............+||||||++..+ +..+|..++. .+++||+
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS~ 154 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFAL 154 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccc------hHHHhhhhcC-CCcceEE
Confidence 8999999999974 245555 11111111112347999999999887 4556666554 5689999
Q ss_pred EecCCCCCCCCcEEEEcCcCCCCcc------cceeEEeccCc----cceEEEeceEEEcCeeeeec--------CCCeeE
Q 010466 227 WFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGCAA 288 (510)
Q Consensus 227 ~l~~~~~~~~~G~L~fGg~d~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~~a 288 (510)
||.+.. ...|.|+||+.++.++. +++.|+|+... .+|.|++++|+||++.+.++ .+...+
T Consensus 155 CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~ 232 (362)
T cd05489 155 CLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGV 232 (362)
T ss_pred EeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcE
Confidence 998753 23799999999987774 78999999653 79999999999999987642 234579
Q ss_pred EEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCcccccccccc
Q 010466 289 IADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVV 368 (510)
Q Consensus 289 iiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~ 368 (510)
+|||||++++||+++|++|.+++.++. ..++. ..+.
T Consensus 233 iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~~---------~~~~------------------------- 268 (362)
T cd05489 233 KLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIPR---------VPAA------------------------- 268 (362)
T ss_pred EEecCCceEEECHHHHHHHHHHHHHHh----------cccCc---------CCCC-------------------------
Confidence 999999999999999999999886430 00000 0000
Q ss_pred ccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCCCCCCceeeeCCCCCCCCcEEEEECC--EE
Q 010466 369 PENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG--KI 446 (510)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~P~i~f~~~g--~~ 446 (510)
....+.|+.... ...|+....+|+|+|+|+| ++
T Consensus 269 ----------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~ 303 (362)
T cd05489 269 ----------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVN 303 (362)
T ss_pred ----------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCCeE
Confidence 000134554321 1233334689999999965 99
Q ss_pred EeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEEEEc
Q 010466 447 FDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 509 (510)
Q Consensus 447 ~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfa~a 509 (510)
|+|+|++|+++..+ ...|+ +|...+. ..++.||||+.|||++|++||++++|||||++
T Consensus 304 ~~l~~~ny~~~~~~--~~~Cl-~f~~~~~--~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 304 WTIFGANSMVQVKG--GVACL-AFVDGGS--EPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCceEEEcCC--CcEEE-EEeeCCC--CCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999998654 36896 5654432 12458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.82 E-value=5.2e-20 Score=155.74 Aligned_cols=104 Identities=63% Similarity=0.962 Sum_probs=86.7
Q ss_pred EEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCc-cCCCCCceeECCcEEEEEecCceEEEEEEEeEEEEcc
Q 010466 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (510)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y-~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~~g~ 170 (510)
++|.||||||++.|+|||||+++||+|..|. ...|..+..| +|+.|+|++...+.|.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2334445566 9999999999999999999999999999999999999
Q ss_pred eEeccc----eeeecCccccccccceEEee
Q 010466 171 LVVKDQ----ATREPSLTFLLAKFDGILGL 196 (510)
Q Consensus 171 ~~~~~~----~~~~~~~~~~~~~~~GIlGL 196 (510)
..++++ +....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 988888 22222322344578999997
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.82 E-value=3.1e-19 Score=162.13 Aligned_cols=133 Identities=32% Similarity=0.553 Sum_probs=97.5
Q ss_pred EEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeEC----------------------CcE
Q 010466 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (510)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~----------------------~~~ 147 (510)
|+++|.||||+|++.|++||||+++|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2578888899888763 268
Q ss_pred EEEEecCce-EEEEEEEeEEEEcce-----Eeccc---eeeecCccccccccceEEeeccccccCCCCCcHHHHHHHcCC
Q 010466 148 ADIHYGTGA-ISGFFSEDHVKIGDL-----VVKDQ---ATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGL 218 (510)
Q Consensus 148 ~~~~Y~~gs-~~G~~~~D~v~~g~~-----~~~~~---~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~l~~qg~ 218 (510)
|.+.|++++ ..|.+++|+++++.. .+.+. ....... + ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~-~~~~~GilGLg~~~~S------l~sQl~~~-- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-L-FYGADGILGLGRGPLS------LPSQLASS-- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-S-STTEEEEEE-SSSTTS------HHHHHHHH--
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-C-CcCCCcccccCCCccc------HHHHHHHh--
Confidence 999999987 699999999999764 23332 2211111 1 2278999999998887 78888887
Q ss_pred CCCCeEEEEecCCCCCCCCcEEEEcC
Q 010466 219 VNEPVFSFWFNRNADEEEGGEIVFGG 244 (510)
Q Consensus 219 i~~~~FSl~l~~~~~~~~~G~L~fGg 244 (510)
..++||+||.+ .+....|.|+||+
T Consensus 141 -~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 -SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ---SEEEEEB-S--SSSSEEEEEECS
T ss_pred -cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.80 E-value=2.7e-19 Score=162.29 Aligned_cols=153 Identities=24% Similarity=0.410 Sum_probs=104.0
Q ss_pred ceEEEeceEEEcCeeeeecCC-------CeeEEEcCCCcCcccCHHHHHHHHHHhcCCcccccccchhhhhhhHHHHHHh
Q 010466 264 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINML 336 (510)
Q Consensus 264 ~w~v~l~~i~v~~~~~~~~~~-------~~~aiiDTGtt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~ 336 (510)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|++|.+++.+.. ...+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~----------~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM----------GAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH----------HTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh----------hhcc-------
Confidence 588999999999999987644 4679999999999999999999999886430 0000
Q ss_pred hccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 010466 337 LAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCD 416 (510)
Q Consensus 337 ~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~ 416 (510)
. +++.-.....+.|+
T Consensus 64 ---~--------------------------------------------------------------~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 64 ---V--------------------------------------------------------------SREAPPFSGFDLCY 78 (161)
T ss_dssp -------------------------------------------------------------------CEE---TT-S-EE
T ss_pred ---c--------------------------------------------------------------ccccccCCCCCcee
Confidence 0 00000112345677
Q ss_pred cCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEE
Q 010466 417 RLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHT 495 (510)
Q Consensus 417 ~~~~~~~~~~~~c~~~~~~P~i~f~~~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yv 495 (510)
..+... .+ .....+|+|+|+|. |++++|+|++|++...++ ..|++.... + ....+..|||+.+|+++++
T Consensus 79 ~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~~-~--~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVPS-D--ADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEEE-T--STTSSSEEE-HHHCCTEEE
T ss_pred eccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEcc-C--CCCCCcEEECHHHhcCcEE
Confidence 665421 00 11248999999995 899999999999987643 799875443 1 2345678999999999999
Q ss_pred EEECCCCeEEEEE
Q 010466 496 VFDYSNMRVGFAE 508 (510)
Q Consensus 496 vfD~~~~~iGfa~ 508 (510)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999997
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.80 E-value=1.5e-05 Score=53.66 Aligned_cols=38 Identities=32% Similarity=0.675 Sum_probs=36.2
Q ss_pred ccchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCC
Q 010466 382 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 419 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 419 (510)
..|.+|+++++++++.|.+|.|+++|.+.+++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 57999999999999999999999999999999999876
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.72 E-value=9e-05 Score=60.28 Aligned_cols=91 Identities=20% Similarity=0.352 Sum_probs=60.8
Q ss_pred eEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceE-EEEEEEeEEE
Q 010466 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-SGFFSEDHVK 167 (510)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~-~G~~~~D~v~ 167 (510)
.|++++.|| ++++.+++|||++.+|+...... .+.. . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcCC--C---------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 489999999 69999999999999999764221 1111 0 1112345566777774 4555688999
Q ss_pred EcceEeccc-eeeecCccccccccceEEeecc
Q 010466 168 IGDLVVKDQ-ATREPSLTFLLAKFDGILGLGF 198 (510)
Q Consensus 168 ~g~~~~~~~-~~~~~~~~~~~~~~~GIlGLg~ 198 (510)
+|+..++++ ........+ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 999988876 222222111 5799999864
No 29
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=97.17 E-value=0.00017 Score=47.22 Aligned_cols=34 Identities=53% Similarity=1.078 Sum_probs=32.5
Q ss_pred cccchhhhhhhHHHHHHhhccCCccchhccCccc
Q 010466 319 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 352 (510)
Q Consensus 319 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c 352 (510)
+.|+.++++|++.+++++.+..+|+.+|...|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4699999999999999999999999999999998
No 30
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.73 E-value=0.0095 Score=51.04 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=63.3
Q ss_pred EeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceE-E
Q 010466 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-S 158 (510)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~-~ 158 (510)
+++.-..++.|++++.|. ++++.+++|||++.+-+....-. .. ..++.. ......+.-+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~---~L----gl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ---RL----GLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---Hc----CCCccc------CCceEEEEeCCCcEEE
Confidence 455666688999999997 58999999999999877542110 00 111111 12233444455664 4
Q ss_pred EEEEEeEEEEcceEeccc-eeeecCccccccccceEEeecc
Q 010466 159 GFFSEDHVKIGDLVVKDQ-ATREPSLTFLLAKFDGILGLGF 198 (510)
Q Consensus 159 G~~~~D~v~~g~~~~~~~-~~~~~~~~~~~~~~~GIlGLg~ 198 (510)
..+.-|.+.+|+..+.+. +...... ...+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~----~~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGG----ALSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCC----cCCceEcCHHH
Confidence 556789999999998887 2222221 11379999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.77 E-value=0.079 Score=53.15 Aligned_cols=192 Identities=21% Similarity=0.231 Sum_probs=97.4
Q ss_pred EEEEEeecCCC----ceEE-EEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEEEEe
Q 010466 90 YFGEIGIGTPP----QNFT-VIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSED 164 (510)
Q Consensus 90 Y~~~i~iGtP~----Q~~~-v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D 164 (510)
-++.|+|=.|+ |++. |+|||||.-+=|..+.-.. ...+......+..-.-.+ -..|++|..-|.+.+-
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~~g~~laE---C~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTGGGAPLAE---CAQFASGYTWGSVRTA 96 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccCCCcchhh---hhhccCcccccceEEE
Confidence 35566664443 5555 9999999988776543210 000011111111000011 2457777778999999
Q ss_pred EEEEcceEeccc---eeeec---------------CccccccccceEEeeccccccC----------C------CC---C
Q 010466 165 HVKIGDLVVKDQ---ATREP---------------SLTFLLAKFDGILGLGFQEISV----------G------KA---V 207 (510)
Q Consensus 165 ~v~~g~~~~~~~---~~~~~---------------~~~~~~~~~~GIlGLg~~~~s~----------~------~~---~ 207 (510)
.|++++....+. .+... .........+||||+|.-.... . .. .
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999998654333 11110 0111234579999999754322 0 00 0
Q ss_pred cHHHHHHHcCCCCCCeEEEEecCC---------C---CCCCCcEEEEcCcCCCC--cccceeEEeccCccceEEEeceEE
Q 010466 208 PVWYNMVNQGLVNEPVFSFWFNRN---------A---DEEEGGEIVFGGMDPDH--YKGEHTYVPVTQKGYWQFDMGDVM 273 (510)
Q Consensus 208 ~~l~~l~~qg~i~~~~FSl~l~~~---------~---~~~~~G~L~fGg~d~~~--~~g~l~~~p~~~~~~w~v~l~~i~ 273 (510)
+.-..+.+| +..|+..|-.+.+ + .....|.|+||=--.+. ..+.....+....++....
T Consensus 177 ~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt~----- 249 (370)
T PF11925_consen 177 STTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTTT----- 249 (370)
T ss_pred cccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEEE-----
Confidence 111123333 4456555532221 1 23468999998322221 1222445555555553322
Q ss_pred EcCeeeeecCCCeeEEEcCCCcCcccCH
Q 010466 274 IDGQTTGFCAGGCAAIADSGTSLLAGPT 301 (510)
Q Consensus 274 v~~~~~~~~~~~~~aiiDTGtt~i~lP~ 301 (510)
++|.... ...||||+.-.++|+
T Consensus 250 ~~G~t~~------~sf~DSGSNg~fF~d 271 (370)
T PF11925_consen 250 FNGQTYS------ASFFDSGSNGYFFPD 271 (370)
T ss_pred ecCceee------eeeEecCCceeeccC
Confidence 2333321 249999999999885
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.32 E-value=0.09 Score=41.77 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=49.8
Q ss_pred EEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceE-EEEEEEeEEEEcc
Q 010466 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-SGFFSEDHVKIGD 170 (510)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~-~G~~~~D~v~~g~ 170 (510)
+++.|+ ++++.+++|||++.+.+...-+. .. ...+.. ......+.-.+|.. .....-+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~---~l----~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK---KL----GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH---Hc----CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 357777 58999999999998877643321 00 011111 01123333444443 3445556899999
Q ss_pred eEeccc-eeeecCccccccccceEEeec
Q 010466 171 LVVKDQ-ATREPSLTFLLAKFDGILGLG 197 (510)
Q Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~GIlGLg 197 (510)
..+.+. ..... .....+||||+-
T Consensus 66 ~~~~~~~~~v~~----~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD----LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC----CCCCCEEEeCCc
Confidence 887665 22221 234579999974
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.54 E-value=0.39 Score=44.29 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCCccEEeceeccCceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEec
Q 010466 74 SGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYG 153 (510)
Q Consensus 74 ~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~ 153 (510)
.++...+.|....++-|.++..|- +|++..++|||-+.+-+....-. .-.++.+. .+.++.+.-+
T Consensus 90 ~~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TA 154 (215)
T COG3577 90 GDGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTA 154 (215)
T ss_pred CCCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEcc
Confidence 345668889888899999999998 69999999999999887654321 12344322 2445666677
Q ss_pred CceEE-EEEEEeEEEEcceEeccc
Q 010466 154 TGAIS-GFFSEDHVKIGDLVVKDQ 176 (510)
Q Consensus 154 ~gs~~-G~~~~D~v~~g~~~~~~~ 176 (510)
+|... ..+--|.|.||+....+.
T Consensus 155 NG~~~AA~V~Ld~v~IG~I~~~nV 178 (215)
T COG3577 155 NGRARAAPVTLDRVQIGGIRVKNV 178 (215)
T ss_pred CCccccceEEeeeEEEccEEEcCc
Confidence 88864 557789999999998887
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.51 E-value=0.47 Score=40.71 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=55.3
Q ss_pred CceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEE-EEecCce--EEEEEEE
Q 010466 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFSE 163 (510)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~-~~Y~~gs--~~G~~~~ 163 (510)
...+++++.|+ ++++.+++|||++..++...-+. .++-.. .. ...+. ...+.|. ..|....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl~~----~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGLMR----LI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCCcc----cc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45689999998 58999999999999988653221 121110 00 11111 1222222 4677778
Q ss_pred eEEEEcceEeccceeeecCccccccccceEEeecc
Q 010466 164 DHVKIGDLVVKDQATREPSLTFLLAKFDGILGLGF 198 (510)
Q Consensus 164 D~v~~g~~~~~~~~~~~~~~~~~~~~~~GIlGLg~ 198 (510)
+.+.+++...+...... .....++|||+-+
T Consensus 78 ~~l~i~~~~~~~~~~Vl-----~~~~~d~ILG~d~ 107 (124)
T cd05479 78 AQVKIGNLFLPCSFTVL-----EDDDVDFLIGLDM 107 (124)
T ss_pred EEEEECCEEeeeEEEEE-----CCCCcCEEecHHH
Confidence 88999998765332111 1225699999874
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.24 E-value=0.5 Score=40.53 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.3
Q ss_pred eeEEChhhhcceEEEEECCCCeEEE
Q 010466 482 LWILGDVFMGPYHTVFDYSNMRVGF 506 (510)
Q Consensus 482 ~~ILG~~fl~~~yvvfD~~~~~iGf 506 (510)
..|||..||+.+-.+.|+++.+|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4699999999999999999998753
No 36
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=92.30 E-value=0.23 Score=46.64 Aligned_cols=88 Identities=26% Similarity=0.522 Sum_probs=69.8
Q ss_pred ccchhhhhhhHHHHHHhhccCCccchhccCcccccCCCCccccccccccccCCcCCCCCCCCccchhhHHHHHHHHHHhh
Q 010466 320 ECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLK 399 (510)
Q Consensus 320 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (510)
.|..+++.|.+.+++.+.++++|+..|...++|+-... ++. +. +.+-.....|..|-..+++....|.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~-~~~-----~~------~~~~~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG-PVS-----EV------FASQPAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc-hhh-----hh------hhhcccccccHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999985211 111 01 1122237889999999999999998
Q ss_pred h-hhhHHHHHHhhhhhcccCC
Q 010466 400 Q-NQTQERILNYVNELCDRLP 419 (510)
Q Consensus 400 ~-~~t~~~~~~~~~~~c~~~~ 419 (510)
. +.++..+.......|..++
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 8 8888888888888885544
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.12 E-value=0.38 Score=42.01 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.5
Q ss_pred eeEEChhhhcceEEEEECCCCeEEEEE
Q 010466 482 LWILGDVFMGPYHTVFDYSNMRVGFAE 508 (510)
Q Consensus 482 ~~ILG~~fl~~~yvvfD~~~~~iGfa~ 508 (510)
..|||.++|+.+....|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 469999999999999999999998864
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.76 E-value=0.44 Score=38.30 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=43.1
Q ss_pred EEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCce---EEEEEEEeEE
Q 010466 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (510)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs---~~G~~~~D~v 166 (510)
|++.+.|+ ++++.+++||||+..++....+. ....+.. ......+.-.+|. ..|.+ .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~~------~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPPL------KPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCcc------ccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 59999999999999999764432 0010000 1122333334444 36776 7889
Q ss_pred EEcceEec
Q 010466 167 KIGDLVVK 174 (510)
Q Consensus 167 ~~g~~~~~ 174 (510)
++++....
T Consensus 64 ~~~~~~~~ 71 (91)
T cd05484 64 KYGGKTKV 71 (91)
T ss_pred EECCEEEE
Confidence 99887643
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=90.88 E-value=2.2 Score=36.40 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.5
Q ss_pred CccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 261 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 261 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
..+++.+. +.|||..+ ..++|||++.+.++.++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 45566544 46777654 479999999999999877765
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.14 E-value=1.5 Score=34.79 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=46.7
Q ss_pred EEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCceEEEEE-EEe-EEEEcc
Q 010466 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (510)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs~~G~~-~~D-~v~~g~ 170 (510)
.+.|. ++++.+++|||++.+-+....+. .. . ...+...+.=.+|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~---~~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP---KQ-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh---hc-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45565 68999999999999999765442 00 0 1123333433444321111 122 699999
Q ss_pred eEeccceeeecCccccccccceEEeecc
Q 010466 171 LVVKDQATREPSLTFLLAKFDGILGLGF 198 (510)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~GIlGLg~ 198 (510)
....++...... ..++|||+.+
T Consensus 63 ~~~~~~~~v~~~------~~~~lLG~df 84 (86)
T cd06095 63 HTVSHSFLVVPN------CPDPLLGRDL 84 (86)
T ss_pred EEEEEEEEEEcC------CCCcEechhh
Confidence 888866222211 1488999864
No 41
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=88.51 E-value=0.52 Score=35.86 Aligned_cols=37 Identities=38% Similarity=0.768 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHHHhhhhhhHHHHHHhhhhhcccCC
Q 010466 383 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 419 (510)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 419 (510)
.|..|+.++..++..+..+.+++.+.+.+.+.|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999988
No 42
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.45 E-value=3.2 Score=34.54 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred eeEEChhhhcceEEEEECCCCeE
Q 010466 482 LWILGDVFMGPYHTVFDYSNMRV 504 (510)
Q Consensus 482 ~~ILG~~fl~~~yvvfD~~~~~i 504 (510)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999988753
No 43
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=86.15 E-value=0.46 Score=36.19 Aligned_cols=37 Identities=43% Similarity=0.955 Sum_probs=34.1
Q ss_pred ccccccchhhhhhhHHHHHHhhccCCccchhccCccc
Q 010466 316 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 352 (510)
Q Consensus 316 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c 352 (510)
.+...|+.+++.|.+.+++.+.....|+.+|...|+|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3567899999999999999999999999999999988
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.14 E-value=1.9 Score=33.02 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=28.7
Q ss_pred cCceEEEEEeecCCCceEEEEecCCCCceeeeCCCC
Q 010466 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (510)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (510)
....+++++.|| ++.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 357899999999 4999999999999998876543
No 45
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=78.22 E-value=1.8 Score=40.84 Aligned_cols=50 Identities=24% Similarity=0.548 Sum_probs=42.7
Q ss_pred HHHHhcCCcccccccchhhhhhhHHHHHHhhccCCccchhccCcccccCC
Q 010466 307 VNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDG 356 (510)
Q Consensus 307 l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~ 356 (510)
..+....-.++.+.|++++..|++.++..+...++|..+|.+.|.|....
T Consensus 158 ~~~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~~ 207 (218)
T KOG1340|consen 158 LLKSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPAA 207 (218)
T ss_pred HHhhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCccc
Confidence 33444566677888999999999999999999999999999999998443
No 46
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.28 E-value=3.4 Score=32.42 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.2
Q ss_pred EEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 272 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 272 i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
+.|+|+++ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 45666644 489999999999999888776
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=71.87 E-value=6.4 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.7
Q ss_pred EEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 272 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 272 i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
+.+++..+ .+++|||++..+++.+..+.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 45666555 389999999999999988877
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=71.45 E-value=4.8 Score=32.63 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.7
Q ss_pred EEEEeecCCCceEEEEecCCCCceeeeCCCC
Q 010466 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (510)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (510)
+.+|.+. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5677887 4899999999999988876544
No 49
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=68.50 E-value=3.2 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.062 Sum_probs=16.1
Q ss_pred eEEeeeeeccCchhhhhhhccccc
Q 010466 30 LYRIGLKKRKFDLNNRVAARLDSK 53 (510)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (510)
++||||+|.++.+..+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999998888777654
No 50
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=68.43 E-value=7.3 Score=31.07 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=24.6
Q ss_pred eEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 271 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 271 ~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
.+.|+|..+. .++|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3567777664 79999999999999888866
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.54 E-value=5 Score=32.60 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=8.8
Q ss_pred CcchhHHHHHHHHHHHhhhh
Q 010466 3 MVFKSITAGFFLCLLLFPVV 22 (510)
Q Consensus 3 m~~~~~~~~~~l~~l~~~~~ 22 (510)
|+++.++++.++++++++++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 55554444434433333333
No 52
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=62.71 E-value=11 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.5
Q ss_pred EEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 272 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 272 i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
+.+|+..+ .+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 45665554 489999999999999877655
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=60.82 E-value=26 Score=31.38 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCeeEEEcCCCcCcccCHHHHHHHH
Q 010466 284 GGCAAIADSGTSLLAGPTTIITQVN 308 (510)
Q Consensus 284 ~~~~aiiDTGtt~i~lP~~~~~~l~ 308 (510)
....+++|||++..++..++.+.|.
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhhC
Confidence 3556899999999999988887764
No 54
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=58.47 E-value=12 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=23.7
Q ss_pred EEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 272 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 272 i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
+.+||..+. .++|||++.+.++++..+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 456776653 79999999999999888875
No 55
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.83 E-value=12 Score=29.88 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=21.7
Q ss_pred EEeecCCCceEEEEecCCCCceeeeCCCC
Q 010466 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (510)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (510)
.+.++ +|.+.+++|||++++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 35666 6999999999999999875443
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=42.88 E-value=30 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.8
Q ss_pred EEEEeecCCCceEEEEecCCCCceeeeCC
Q 010466 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (510)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~ 119 (510)
...+.++.-+.++.++|||||+...+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555666679999999999999888753
No 57
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=42.87 E-value=53 Score=30.61 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCCcEEEEECCEEEeeCcccceeeecCCCCceeEeceeecccCCCCCCeeEEChhhhcceEEEEECCCCeEEE
Q 010466 434 SLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGF 506 (510)
Q Consensus 434 ~~P~i~f~~~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGf 506 (510)
..+.+.+.++|..|.+|- ++... .+-..|||.+|+|.|+=....+ .+|-|
T Consensus 66 ~~~~~~i~I~~~~F~IP~---iYq~~-------------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPT---IYQQE-------------------SGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred EecCceEEEccEEEeccE---EEEec-------------------CCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 456788888888888753 32211 2235799999999887555554 34554
No 58
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=42.30 E-value=21 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.8
Q ss_pred EEEcCeeeeecCCCeeEEEcCCCcCcccCHHHH
Q 010466 272 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 304 (510)
Q Consensus 272 i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~ 304 (510)
|.+++..+ .++||||+..+.++...+
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-------EEEEecCCCcceeccccc
Confidence 55666655 489999999999997543
No 59
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=41.02 E-value=30 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.7
Q ss_pred eeEEEcCCCcCcccCHHHHHHHH
Q 010466 286 CAAIADSGTSLLAGPTTIITQVN 308 (510)
Q Consensus 286 ~~aiiDTGtt~i~lP~~~~~~l~ 308 (510)
....+|||++...+|...++++-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 34799999999999998888764
No 60
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.19 E-value=75 Score=27.21 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=49.3
Q ss_pred CceEEEEEeecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCce--EEEEEEEe
Q 010466 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSED 164 (510)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs--~~G~~~~D 164 (510)
....|+++.|+ ++++.+.+|||...+-+.. .|. ..|+-...-+.. .-...++-|. ..|.+..=
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEGG----------G-EE-------EEEEEEEEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCH-HHH--HHcCChhhcccc----------ccccccCCCcCceeEEEEEE
Confidence 34689999999 5999999999999887753 342 345432222110 0112334444 67989888
Q ss_pred EEEEcceEeccceeeecCccccccccceEEeec
Q 010466 165 HVKIGDLVVKDQATREPSLTFLLAKFDGILGLG 197 (510)
Q Consensus 165 ~v~~g~~~~~~~~~~~~~~~~~~~~~~GIlGLg 197 (510)
.+.+|+..++-...... ....+=+|||-
T Consensus 87 ~l~ig~~~~~~s~~Vle-----~~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFPCSFTVLE-----DQDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEEEEEEEET-----TSSSSEEEEHH
T ss_pred EEEECCEEEEEEEEEeC-----CCCcceeeeHH
Confidence 99999977665422222 12345667764
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=36.76 E-value=42 Score=28.77 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.5
Q ss_pred eEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 271 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 271 ~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
.+++||..+. |++|||+..+.++....+++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 3567777764 89999999999999888764
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=28 Score=29.62 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.3
Q ss_pred EEEcCCCc-CcccCHHHHHHHH
Q 010466 288 AIADSGTS-LLAGPTTIITQVN 308 (510)
Q Consensus 288 aiiDTGtt-~i~lP~~~~~~l~ 308 (510)
.++|||.+ ++.+|.++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999888763
No 63
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=29.93 E-value=71 Score=29.80 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=28.8
Q ss_pred CccceEEEeceEEEcCeeeeecCCCeeEEEcCCCcCcccCHHHHHHH
Q 010466 261 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 307 (510)
Q Consensus 261 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 307 (510)
.+|+|.+ ...|||+.+. .++|||.|.+.++++..+.+
T Consensus 102 ~~GHF~a---~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEA---NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEE---EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 3566554 3578888875 69999999999999887765
No 64
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=26.99 E-value=2.1e+02 Score=22.92 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.0
Q ss_pred ceEEEEecCCCCceeeeCCCCC
Q 010466 101 QNFTVIFDTGSSNLWVPSSKCY 122 (510)
Q Consensus 101 Q~~~v~lDTGSs~~Wv~~~~C~ 122 (510)
-...+++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3468999999999999976664
No 65
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=26.06 E-value=1.5e+02 Score=28.68 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=12.5
Q ss_pred CccEEeceeccCceEEEEE
Q 010466 76 DADIVALKNYMDAQYFGEI 94 (510)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i 94 (510)
....+.+.|..+..|+++.
T Consensus 44 ~~~sl~l~N~~~~p~LvQs 62 (253)
T PRK15249 44 SSVDVQLKNNDAIPYIVQT 62 (253)
T ss_pred cceeEEEEcCCCCcEEEEE
Confidence 3456777777666677763
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=25.11 E-value=77 Score=26.18 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=39.0
Q ss_pred EEEeecCCCc----eEEEEecCCCCcee-eeCCCCCCCcccCCCCCccCCCCCceeECCcEEEEEecCce-EEEEEEEeE
Q 010466 92 GEIGIGTPPQ----NFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (510)
Q Consensus 92 ~~i~iGtP~Q----~~~v~lDTGSs~~W-v~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~ 165 (510)
+++.+..|.| ++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5778887732 68899999998764 4422110 00111111 1234455665 455677888
Q ss_pred EEEcceEe
Q 010466 166 VKIGDLVV 173 (510)
Q Consensus 166 v~~g~~~~ 173 (510)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 67
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.17 E-value=82 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.1
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhc
Q 010466 1 MGMVFKSITAGFFLCLLLFPVVFS 24 (510)
Q Consensus 1 m~m~~~~~~~~~~l~~l~~~~~~a 24 (510)
|+|.+...++++++++.++++...
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~ 24 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIY 24 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhc
Confidence 889988777666666656555443
No 68
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=92 Score=29.45 Aligned_cols=26 Identities=23% Similarity=0.177 Sum_probs=20.1
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccC
Q 010466 1 MGMVFKSITAGFFLCLLLFPVVFSTP 26 (510)
Q Consensus 1 m~m~~~~~~~~~~l~~l~~~~~~a~~ 26 (510)
|.|+.|+.+++.+..+|+|.++.+..
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v~ 26 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHVN 26 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhhc
Confidence 99999999888888777776555443
Done!