Query 010467
Match_columns 510
No_of_seqs 236 out of 1327
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2596 Aminopeptidase I zinc 100.0 2E-132 4E-137 1006.5 35.6 443 52-500 9-457 (479)
2 COG1362 LAP4 Aspartyl aminopep 100.0 1E-124 3E-129 965.9 35.9 416 59-499 7-423 (437)
3 PF02127 Peptidase_M18: Aminop 100.0 2E-124 5E-129 992.0 29.2 420 67-498 1-421 (432)
4 PTZ00371 aspartyl aminopeptida 100.0 3E-121 6E-126 978.7 44.5 437 56-499 4-442 (465)
5 PRK02813 putative aminopeptida 100.0 4E-118 8E-123 946.6 44.5 411 57-498 4-414 (428)
6 PRK02256 putative aminopeptida 100.0 4E-118 9E-123 950.3 40.5 439 34-499 3-449 (462)
7 PRK09864 putative peptidase; P 100.0 1.7E-52 3.6E-57 434.5 28.1 321 59-498 4-327 (356)
8 COG1363 FrvX Cellulase M and r 100.0 4.2E-51 9E-56 421.5 29.8 326 58-498 5-332 (355)
9 PRK09961 exoaminopeptidase; Pr 100.0 5.6E-50 1.2E-54 415.7 28.4 316 59-498 4-319 (344)
10 TIGR03107 glu_aminopep glutamy 100.0 9.5E-50 2.1E-54 414.1 29.6 321 60-498 3-327 (350)
11 PF05343 Peptidase_M42: M42 gl 100.0 2.5E-48 5.5E-53 394.9 18.1 283 115-498 2-286 (292)
12 TIGR03106 trio_M42_hydro hydro 100.0 1.3E-45 2.9E-50 382.6 29.9 319 57-498 5-328 (343)
13 PF01546 Peptidase_M20: Peptid 97.6 0.00046 1E-08 64.5 10.0 147 297-498 26-176 (189)
14 TIGR01882 peptidase-T peptidas 97.0 0.017 3.6E-07 61.8 15.0 38 459-498 355-392 (410)
15 PRK10199 alkaline phosphatase 95.9 0.0093 2E-07 62.7 4.9 45 303-352 140-184 (346)
16 TIGR01883 PepT-like peptidase 95.3 0.016 3.6E-07 60.2 4.2 62 430-498 288-349 (361)
17 PF04389 Peptidase_M28: Peptid 95.3 0.0061 1.3E-07 57.1 0.7 149 300-494 20-172 (179)
18 PRK05469 peptidase T; Provisio 92.2 0.15 3.2E-06 54.3 4.2 63 429-498 328-390 (408)
19 PRK08554 peptidase; Reviewed 91.6 0.17 3.7E-06 54.8 4.0 63 429-498 360-422 (438)
20 PRK13381 peptidase T; Provisio 91.3 0.22 4.7E-06 53.0 4.2 63 429-498 326-388 (404)
21 TIGR03176 AllC allantoate amid 90.6 0.39 8.4E-06 51.5 5.5 61 430-498 326-388 (406)
22 PRK07473 carboxypeptidase; Pro 89.9 0.27 5.9E-06 52.0 3.5 61 431-498 300-361 (376)
23 PRK07338 hypothetical protein; 86.8 0.64 1.4E-05 49.2 3.9 62 430-498 321-383 (402)
24 PRK10199 alkaline phosphatase 86.2 1.4 3.1E-05 46.6 6.0 79 60-142 40-122 (346)
25 TIGR01882 peptidase-T peptidas 84.7 0.6 1.3E-05 50.0 2.4 73 59-147 4-93 (410)
26 PRK12891 allantoate amidohydro 84.7 0.94 2E-05 48.5 3.9 62 429-498 331-394 (414)
27 PRK06837 acetylornithine deace 84.6 0.82 1.8E-05 49.1 3.4 63 430-498 344-407 (427)
28 TIGR01893 aa-his-dipept aminoa 84.0 3.8 8.3E-05 44.8 8.3 65 428-498 396-462 (477)
29 TIGR01246 dapE_proteo succinyl 82.9 1.1 2.4E-05 46.8 3.5 62 430-498 294-356 (370)
30 PRK08652 acetylornithine deace 82.6 0.88 1.9E-05 46.8 2.6 62 430-498 268-330 (347)
31 PLN02280 IAA-amino acid hydrol 82.3 7.7 0.00017 42.8 9.8 68 57-143 95-166 (478)
32 PRK13983 diaminopimelate amino 81.8 1.6 3.4E-05 45.9 4.1 63 429-498 323-386 (400)
33 TIGR01902 dapE-lys-deAc N-acet 81.6 1.2 2.6E-05 46.0 3.1 64 429-498 255-319 (336)
34 TIGR01910 DapE-ArgE acetylorni 81.2 1.5 3.2E-05 46.1 3.6 63 429-498 305-369 (375)
35 PRK12891 allantoate amidohydro 80.6 2.9 6.4E-05 44.7 5.8 50 74-141 39-88 (414)
36 TIGR01883 PepT-like peptidase 79.6 3.5 7.5E-05 42.9 5.8 50 298-351 87-141 (361)
37 COG2195 PepD Di- and tripeptid 79.1 3.3 7.2E-05 44.8 5.6 64 425-494 330-394 (414)
38 PRK13799 unknown domain/N-carb 79.0 2.8 6.2E-05 47.3 5.2 63 429-498 510-574 (591)
39 PRK13590 putative bifunctional 78.7 3.1 6.6E-05 47.1 5.4 63 429-498 508-572 (591)
40 TIGR01893 aa-his-dipept aminoa 78.1 2.8 6.2E-05 45.8 4.8 68 58-141 7-74 (477)
41 PRK09290 allantoate amidohydro 77.2 2.4 5.3E-05 45.2 3.9 62 429-498 332-395 (413)
42 TIGR01910 DapE-ArgE acetylorni 77.0 3.4 7.5E-05 43.2 4.9 52 297-351 95-147 (375)
43 PRK05469 peptidase T; Provisio 76.4 8.8 0.00019 40.8 7.9 53 74-142 31-83 (408)
44 TIGR01879 hydantase amidase, h 76.4 4.7 0.0001 42.9 5.7 63 429-498 324-387 (401)
45 PRK15026 aminoacyl-histidine d 75.5 3.3 7.2E-05 45.7 4.4 68 60-143 15-82 (485)
46 PRK08651 succinyl-diaminopimel 75.1 2.9 6.2E-05 44.0 3.7 60 432-498 315-376 (394)
47 PRK12890 allantoate amidohydro 74.2 3.4 7.4E-05 44.1 4.0 62 429-498 333-396 (414)
48 KOG2195 Transferrin receptor a 74.0 8.7 0.00019 44.4 7.4 154 288-491 352-514 (702)
49 PRK04443 acetyl-lysine deacety 74.0 3.1 6.7E-05 43.3 3.5 63 430-498 271-334 (348)
50 PRK08596 acetylornithine deace 73.8 3.9 8.4E-05 43.8 4.3 49 299-350 110-159 (421)
51 PRK12890 allantoate amidohydro 73.7 9.9 0.00021 40.5 7.4 54 71-142 34-87 (414)
52 PRK15026 aminoacyl-histidine d 73.6 14 0.0003 40.9 8.6 66 427-498 401-468 (485)
53 PRK04443 acetyl-lysine deacety 73.2 10 0.00023 39.3 7.3 65 57-142 8-72 (348)
54 PRK00466 acetyl-lysine deacety 73.0 3.6 7.7E-05 42.7 3.7 61 431-498 267-328 (346)
55 PRK07473 carboxypeptidase; Pro 72.7 4.2 9.1E-05 43.0 4.2 45 303-350 109-153 (376)
56 PRK08588 succinyl-diaminopimel 72.6 4 8.6E-05 42.7 4.0 68 57-141 4-71 (377)
57 TIGR01880 Ac-peptdase-euk N-ac 72.5 3.5 7.6E-05 43.6 3.6 62 430-498 319-383 (400)
58 PRK06915 acetylornithine deace 72.5 4.7 0.0001 43.0 4.6 63 430-498 339-403 (422)
59 TIGR01891 amidohydrolases amid 72.1 11 0.00025 39.2 7.3 67 59-142 3-69 (363)
60 PRK12892 allantoate amidohydro 71.8 12 0.00026 39.8 7.4 62 429-498 332-395 (412)
61 TIGR01892 AcOrn-deacetyl acety 71.7 4.7 0.0001 41.7 4.3 48 299-351 90-138 (364)
62 PRK13381 peptidase T; Provisio 71.2 5.5 0.00012 42.3 4.7 43 305-351 137-179 (404)
63 PRK08651 succinyl-diaminopimel 70.7 3.8 8.3E-05 43.1 3.4 74 59-142 10-87 (394)
64 PRK13009 succinyl-diaminopimel 70.7 4.4 9.6E-05 42.2 3.8 61 431-498 298-359 (375)
65 PRK07205 hypothetical protein; 70.3 5.1 0.00011 43.2 4.3 48 299-349 108-156 (444)
66 PRK06837 acetylornithine deace 69.4 11 0.00024 40.4 6.7 80 58-141 23-109 (427)
67 PRK13004 peptidase; Reviewed 68.5 16 0.00034 38.8 7.5 63 430-498 317-381 (399)
68 PRK08737 acetylornithine deace 68.5 4.1 9E-05 42.9 3.0 60 431-498 290-350 (364)
69 PRK12893 allantoate amidohydro 68.4 17 0.00037 38.6 7.7 63 429-498 331-394 (412)
70 TIGR01880 Ac-peptdase-euk N-ac 67.6 6.3 0.00014 41.7 4.2 48 300-350 105-154 (400)
71 PRK08652 acetylornithine deace 67.2 6.6 0.00014 40.3 4.2 35 57-91 4-38 (347)
72 PRK13983 diaminopimelate amino 67.1 14 0.00031 38.7 6.8 77 58-142 8-89 (400)
73 PRK13009 succinyl-diaminopimel 66.5 20 0.00044 37.3 7.7 67 57-141 4-70 (375)
74 PRK00466 acetyl-lysine deacety 66.4 6.1 0.00013 41.0 3.8 34 58-91 13-46 (346)
75 PRK06915 acetylornithine deace 65.7 5.1 0.00011 42.8 3.1 77 58-141 20-105 (422)
76 PRK13004 peptidase; Reviewed 65.4 3.1 6.7E-05 44.1 1.4 66 57-142 17-82 (399)
77 PRK06133 glutamate carboxypept 65.1 8.7 0.00019 41.0 4.7 43 305-350 135-177 (410)
78 PRK09133 hypothetical protein; 64.7 7.6 0.00016 42.2 4.3 49 299-350 133-183 (472)
79 COG2234 Iap Predicted aminopep 64.1 10 0.00022 40.6 5.0 75 300-399 222-296 (435)
80 PRK07338 hypothetical protein; 64.0 14 0.0003 39.1 6.0 52 296-350 118-170 (402)
81 PRK08588 succinyl-diaminopimel 63.9 6.4 0.00014 41.2 3.4 63 430-498 296-361 (377)
82 TIGR01902 dapE-lys-deAc N-acet 63.4 7.7 0.00017 40.0 3.8 42 303-351 79-120 (336)
83 PRK07522 acetylornithine deace 62.5 9.3 0.0002 40.0 4.3 38 459-498 331-369 (385)
84 PRK07906 hypothetical protein; 61.9 32 0.0007 36.7 8.4 63 429-498 340-412 (426)
85 TIGR03526 selenium_YgeY putati 61.9 26 0.00056 37.1 7.6 66 57-142 15-80 (395)
86 PRK09104 hypothetical protein; 61.8 8.7 0.00019 41.7 4.0 44 303-349 125-168 (464)
87 TIGR01246 dapE_proteo succinyl 60.0 26 0.00056 36.6 7.1 65 59-141 3-67 (370)
88 PRK09290 allantoate amidohydro 59.9 26 0.00057 37.3 7.2 51 74-142 36-86 (413)
89 PRK12893 allantoate amidohydro 59.9 8.1 0.00018 41.0 3.3 50 74-141 39-88 (412)
90 PRK06446 hypothetical protein; 59.7 11 0.00023 40.7 4.2 45 301-349 98-142 (436)
91 PRK07318 dipeptidase PepV; Rev 59.5 10 0.00022 41.3 4.0 44 304-350 116-159 (466)
92 PRK13007 succinyl-diaminopimel 58.9 25 0.00054 36.2 6.7 66 57-143 9-75 (352)
93 PRK08262 hypothetical protein; 57.9 13 0.00028 40.7 4.5 45 303-350 151-195 (486)
94 PRK08201 hypothetical protein; 57.6 11 0.00024 40.7 4.0 44 303-349 117-160 (456)
95 PRK06156 hypothetical protein; 57.4 11 0.00024 41.8 3.9 44 305-351 153-196 (520)
96 PRK13007 succinyl-diaminopimel 57.2 20 0.00043 37.0 5.6 44 297-347 85-129 (352)
97 PRK07318 dipeptidase PepV; Rev 57.1 5.2 0.00011 43.5 1.3 61 430-498 388-450 (466)
98 PRK08596 acetylornithine deace 57.0 9 0.00019 41.0 3.1 62 430-498 338-401 (421)
99 PLN02693 IAA-amino acid hydrol 56.3 41 0.0009 36.5 8.1 66 58-142 50-115 (437)
100 PRK07522 acetylornithine deace 54.6 40 0.00087 35.2 7.5 70 57-141 6-76 (385)
101 TIGR03320 ygeY M20/DapE family 54.6 36 0.00078 36.0 7.1 63 430-498 315-379 (395)
102 PRK09133 hypothetical protein; 53.7 10 0.00022 41.3 2.8 62 430-498 386-454 (472)
103 PRK05111 acetylornithine deace 53.3 16 0.00035 38.2 4.2 37 460-498 329-366 (383)
104 TIGR03176 AllC allantoate amid 52.7 13 0.00028 39.8 3.5 52 72-141 30-81 (406)
105 TIGR01892 AcOrn-deacetyl acety 52.4 35 0.00076 35.2 6.6 38 459-498 315-353 (364)
106 TIGR01879 hydantase amidase, h 51.7 12 0.00026 39.7 3.0 52 73-142 29-80 (401)
107 PRK08201 hypothetical protein; 51.3 64 0.0014 34.9 8.6 61 430-498 373-439 (456)
108 PRK12892 allantoate amidohydro 51.3 11 0.00025 39.9 2.7 49 74-141 38-86 (412)
109 PF05382 Amidase_5: Bacterioph 50.7 1.1E+02 0.0023 28.6 8.6 37 77-113 52-88 (145)
110 TIGR01886 dipeptidase dipeptid 49.9 21 0.00046 39.0 4.6 45 303-350 114-158 (466)
111 TIGR01900 dapE-gram_pos succin 48.5 30 0.00065 36.5 5.4 62 62-141 3-64 (373)
112 PRK08554 peptidase; Reviewed 47.9 26 0.00057 38.0 4.9 41 303-348 100-140 (438)
113 cd05565 PTS_IIB_lactose PTS_II 47.7 57 0.0012 28.3 6.0 52 428-487 11-62 (99)
114 PRK07906 hypothetical protein; 47.3 21 0.00045 38.2 3.9 69 59-141 3-77 (426)
115 PRK13013 succinyl-diaminopimel 47.3 23 0.0005 37.7 4.3 43 303-348 120-162 (427)
116 PRK05111 acetylornithine deace 46.9 59 0.0013 34.0 7.3 70 57-141 7-83 (383)
117 TIGR01900 dapE-gram_pos succin 45.9 38 0.00082 35.7 5.6 34 459-493 339-373 (373)
118 TIGR03320 ygeY M20/DapE family 45.3 11 0.00024 39.8 1.5 64 58-141 16-79 (395)
119 PRK07907 hypothetical protein; 45.1 50 0.0011 35.7 6.5 63 430-498 365-432 (449)
120 PRK07907 hypothetical protein; 45.0 33 0.00071 37.1 5.1 43 302-350 120-162 (449)
121 PRK13590 putative bifunctional 45.0 26 0.00057 39.6 4.5 43 300-345 264-306 (591)
122 TIGR01887 dipeptidaselike dipe 44.7 26 0.00057 38.1 4.3 46 303-351 103-148 (447)
123 PRK06133 glutamate carboxypept 44.1 21 0.00046 38.1 3.4 62 432-498 329-392 (410)
124 PRK13799 unknown domain/N-carb 43.8 28 0.0006 39.5 4.4 54 289-345 252-306 (591)
125 PRK07079 hypothetical protein; 43.1 29 0.00064 37.7 4.4 47 301-349 122-168 (469)
126 PRK13013 succinyl-diaminopimel 42.1 26 0.00056 37.3 3.7 61 432-498 344-407 (427)
127 PRK09104 hypothetical protein; 41.4 93 0.002 33.7 7.9 63 430-498 381-447 (464)
128 PRK07079 hypothetical protein; 41.1 25 0.00053 38.3 3.4 64 430-498 374-440 (469)
129 COG3655 Predicted transcriptio 40.7 22 0.00049 29.3 2.2 24 260-283 45-68 (73)
130 COG0624 ArgE Acetylornithine d 40.1 76 0.0016 33.6 6.9 72 57-141 15-87 (409)
131 PF08854 DUF1824: Domain of un 39.5 86 0.0019 28.6 6.0 81 58-143 22-112 (125)
132 PRK07205 hypothetical protein; 36.1 86 0.0019 33.8 6.6 58 430-498 365-427 (444)
133 TIGR03526 selenium_YgeY putati 35.7 23 0.0005 37.5 2.1 63 430-498 315-379 (395)
134 PRK08737 acetylornithine deace 31.3 61 0.0013 34.2 4.4 35 303-347 99-133 (364)
135 PRK06446 hypothetical protein; 31.2 33 0.00071 36.9 2.4 64 430-498 351-419 (436)
136 COG2352 Ppc Phosphoenolpyruvat 31.2 46 0.001 39.1 3.6 43 417-464 561-610 (910)
137 COG2257 Uncharacterized homolo 30.0 53 0.0012 28.2 2.9 22 430-451 30-51 (92)
138 PF03698 UPF0180: Uncharacteri 29.8 71 0.0015 26.8 3.6 41 79-119 11-51 (80)
139 COG0624 ArgE Acetylornithine d 24.6 76 0.0017 33.6 3.7 62 430-498 329-392 (409)
140 TIGR01886 dipeptidase dipeptid 24.0 48 0.001 36.2 2.1 61 430-498 388-450 (466)
141 PRK08262 hypothetical protein; 23.5 1.4E+02 0.0031 32.5 5.6 63 430-498 400-469 (486)
142 PF01202 SKI: Shikimate kinase 22.2 29 0.00064 31.9 -0.0 22 458-479 2-24 (158)
143 KOG0559 Dihydrolipoamide succi 22.0 58 0.0013 34.8 2.1 72 415-490 329-405 (457)
144 KOG2275 Aminoacylase ACY1 and 22.0 96 0.0021 33.7 3.7 51 302-355 125-176 (420)
145 cd08344 MhqB_like_N N-terminal 20.6 2E+02 0.0043 24.0 4.9 45 76-123 66-110 (112)
No 1
>KOG2596 consensus Aminopeptidase I zinc metalloprotease (M18) [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-132 Score=1006.55 Aligned_cols=443 Identities=59% Similarity=0.946 Sum_probs=415.9
Q ss_pred cccccHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCc
Q 010467 52 AQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGF 131 (510)
Q Consensus 52 ~~~~~~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~ 131 (510)
+.++....++++|++|||+||||||||++++++|.++||++|.|++.|+++||+|||++||+++|+||.+|++|.|++||
T Consensus 9 ~~k~~~~s~a~efl~fln~spTpfHav~e~k~~Ll~agF~~LsE~~~W~iepg~kyf~tRN~S~iiAFavG~ky~pgnGf 88 (479)
T KOG2596|consen 9 PSKECKSSAAQEFLDFLNKSPTPFHAVQEFKERLLKAGFKELSEKSDWQIEPGGKYFVTRNGSSIIAFAVGGKYVPGNGF 88 (479)
T ss_pred CCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHccchhcccccCcccCCCceEEEEccCceEEEEeccCcccCCCce
Confidence 44555677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEEC-CCCceEEEeeeeCCCeEEcCCCC
Q 010467 132 HIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRG-SDGSFLHKLVKVKRPLLRVPTLA 210 (510)
Q Consensus 132 ~ii~AH~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~-~~G~~~~~lv~~~~pv~vIp~La 210 (510)
.||+||||||||||||.+.....||+|++|++|||++|+|||||||++||||+||. ++|+++++||++++|+++||+||
T Consensus 89 ~iigaHtDSpcLrlKP~Sk~s~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~~~~~~LV~v~rPllrIPtLA 168 (479)
T KOG2596|consen 89 SIIGAHTDSPCLRLKPVSKRSAEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEAGDGKLIHRLVDVKRPLLRIPTLA 168 (479)
T ss_pred eEEEecCCCcceeecccccccccceEEEEEeecCCccchhhccccccccceEEEEecCCcceeeeeecCCCceeecccee
Confidence 99999999999999999988899999999999999999999999999999999995 46889999999999999999999
Q ss_pred cccccccccCCCCCCCccceeeeeeccCCcccCC---ccc--cCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEE
Q 010467 211 IHLDRTVNKDGFKPNLETQLIPLLATKSEETSVE---PKE--KSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNIC 285 (510)
Q Consensus 211 iHL~r~~~~~~~~~n~~~~L~p~iG~~~~~~~~~---~~~--~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~ 285 (510)
|||+|+.| ++|++|.|++|.|++|....++++. +.+ +....+.+++|++.||.++|+++|++++||++|||.++
T Consensus 169 iHldr~~n-~~f~pn~EtqlvPil~t~~~~~~~~~e~~~~~~~~~~~~~~~~Hhp~Ll~liak~lg~~~edIvd~eL~l~ 247 (479)
T KOG2596|consen 169 IHLDRDVN-EGFKPNTETQLVPILGTAIPAEEEKTEKPSDDGDKPRNSSKGKHHPVLLGLIAKELGCTPEDIVDFELILY 247 (479)
T ss_pred eecCCccc-ccCCCCccceeeeeecccCchhhhcCCCCCCCCccccccccccccHHHHHHHHHHhCCCHHHhhheeeeee
Confidence 99999999 7899999999999999876542211 111 11136677899999999999999999999999999999
Q ss_pred eCCCccccCCCCceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHH
Q 010467 286 DTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRI 365 (510)
Q Consensus 286 d~~~~~~~Gl~~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri 365 (510)
|+||++++|+++|||+++|||||.||||+++||+++... .+++++..++|+++||||||||.++|||.|+|++++|+||
T Consensus 248 Dtq~a~lgG~~~eFiFs~RLDnl~~sF~al~aLi~s~~~-~~l~~e~~ir~valfDnEEvGS~SaQGA~s~~l~~vl~Ri 326 (479)
T KOG2596|consen 248 DTQKATLGGANDEFIFSPRLDNLLSSFCALQALIDSAEG-ESLENESGIRMVALFDNEEVGSDSAQGAGSPFLESVLRRI 326 (479)
T ss_pred cCCchhhcCcccceeecccccchhhHHHHHHHHHHHhcC-CCcccCCCeEEEEeccchhhcchhhccCCCccHHHHHHHH
Confidence 999999999999999999999999999999999998754 4567778899999999999999999999999999999999
Q ss_pred HHhccCCCCChhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCC
Q 010467 366 VGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHN 445 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~ 445 (510)
..+++. ....+.+++++||+||+||+||+||||+++|+++|+|.|++|+|||+|+||||+||..+.++++++|++++
T Consensus 327 ss~~~~---~~~~~~~ai~kSflvSADmaHa~hPNy~~kheenH~P~~h~G~vik~naNqryaTn~v~~~l~kevA~~~~ 403 (479)
T KOG2596|consen 327 SSLFGS---FPTAFEEAIAKSFLVSADMAHAVHPNYSDKHEENHRPLLHGGPVIKVNANQRYATNSVGSALVKEVAELAK 403 (479)
T ss_pred HHhcCC---CchHHHHHhhhheeeehhhhhhcCCCchhhhhhccCCccCCCceEEEcCCcceeccchhHHHHHHHHHHcC
Confidence 998874 57789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccCCC
Q 010467 446 LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDAGL 500 (510)
Q Consensus 446 Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~~~ 500 (510)
+|+|.|++|||++||||||||+|+++||+|+|+|+|||+|||+||||.- +||++
T Consensus 404 vplQ~fvVrNdspcGsTIGPiLAS~~G~RTlDlG~pqLsMHSiRe~~gs-~dv~~ 457 (479)
T KOG2596|consen 404 VPLQDFVVRNDSPCGSTIGPILASKTGIRTLDLGIPQLSMHSIREMCGS-KDVEQ 457 (479)
T ss_pred CCceeEEEecCCCCccccchhhhhhcCceeeecCchhhhhHHHHHHhCc-ccHHH
Confidence 9999999999999999999999999999999999999999999999999 99875
No 2
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-124 Score=965.90 Aligned_cols=416 Identities=44% Similarity=0.732 Sum_probs=395.9
Q ss_pred HHHHH-HHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEe
Q 010467 59 SIVGD-LLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (510)
Q Consensus 59 ~~a~~-~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH 137 (510)
+.+++ |++||++||||||+|++++++|.++||++|+|.+.|+.++|+|||++|+|++||||.+|++|.+++||+||+||
T Consensus 7 ~~~~~~f~~FI~~spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaH 86 (437)
T COG1362 7 ELAEDEFIDFISASPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAH 86 (437)
T ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEee
Confidence 35666 99999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEcCCCCccccccc
Q 010467 138 TDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTV 217 (510)
Q Consensus 138 ~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vIp~LaiHL~r~~ 217 (510)
||||+|+|||+|.++.+||.+++||+|||++++|||||||+|+|||.++++++++++++|++++||++||+|||||+|++
T Consensus 87 tDSP~l~lKp~p~~~~~g~~~~~~e~YGG~~~~~WldrdLsiaGrv~~k~~~~~~~~~lv~~~~Pi~~IP~LaiHL~r~~ 166 (437)
T COG1362 87 TDSPRLRLKPNPDIEVEGYLQLGTEVYGGIILYTWLDRDLSIAGRVFVKDGTGKIISRLVDIDDPILRIPDLAIHLDRDV 166 (437)
T ss_pred cCCCCcccCCCchhhhcceeEEeeEecCCeeecceecCccceeeEEEEecCCCcceeeeccCCCCeeecCcchhhcCcch
Confidence 99999999999999999999999999999999999999999999999997667899999999999999999999999999
Q ss_pred ccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCC
Q 010467 218 NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (510)
Q Consensus 218 ~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~ 297 (510)
| +++++|+|++|.|++|..+.++ +++|+.++++++++++||+++|||++||.++|+|+++++|+++
T Consensus 167 n-~~~~~n~~~~l~piig~~~~~~-------------~~~~~~~ll~~iae~~~v~~ed~vs~dL~~~~~~~a~~~G~~~ 232 (437)
T COG1362 167 N-KSFEINPQENLNPIIGVIPGEE-------------KNKVKASLLKLLAEQLGVEEEDFVSFDLILVDAQKARLVGADG 232 (437)
T ss_pred h-ccCccCccccceeeEeccCccc-------------ccchhHHHHHHHHHHhCCcHhhhhhceEEEecCCcceeeccch
Confidence 8 7899999999999999976221 2357889999999999999999999999999999999999999
Q ss_pred ceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChh
Q 010467 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (510)
Q Consensus 298 e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~ 377 (510)
|||+++|||||+||||+++||+.+++ .+.+.++++||||||||.|+|||.|+||+++|+||+.+++. +++
T Consensus 233 efi~a~rlDn~~~~~a~m~AL~~~~~-------~~~~~v~~~fD~EEIGS~s~~GAds~fL~~vLeri~~a~~~---~~~ 302 (437)
T COG1362 233 EFLSAPRLDNLICCHAGMEALLAAAN-------SDKTCVLALFDHEEIGSLSAQGADSPFLENVLERIILALGG---SRD 302 (437)
T ss_pred hhhccCCccchHHHHHHHHHHHhccC-------CCCceEEEEechhhcccccccCcCchhHHHHHHHHHHHccC---ChH
Confidence 99999999999999999999998743 35578999999999999999999999999999999999886 677
Q ss_pred hHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecCC
Q 010467 378 SFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDM 457 (510)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D~ 457 (510)
++.+++.||++||+||+||+||||+++||++|.|.||+|||||+++||||+||+++.++++++|+++|||||.|++|+|.
T Consensus 303 ~~~~~l~nS~~iSaD~ahaihPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~f~~~~d~ 382 (437)
T COG1362 303 DHLRALANSFLISADVAHAIHPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQVFVLRNDV 382 (437)
T ss_pred HHHHHHhhceeeehhhHhhcCCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEEEEecccC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccCC
Q 010467 458 GCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDAG 499 (510)
Q Consensus 458 ~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~~ 499 (510)
+|||||||++++++||+|||||+|+|+|||+||++.. .|+.
T Consensus 383 ~~Gstigpi~aa~tGi~tIDiG~~~LsMHS~rE~~g~-~D~~ 423 (437)
T COG1362 383 PCGSTIGPILAARTGIRTIDIGPALLSMHSIRELSGS-ADLY 423 (437)
T ss_pred CCCcccchhHHhhcCCceeecchhhhhhccHHHHcch-hHHH
Confidence 9999999999999999999999999999999999999 8863
No 3
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=100.00 E-value=2.2e-124 Score=992.05 Aligned_cols=420 Identities=50% Similarity=0.830 Sum_probs=361.3
Q ss_pred hhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCCCceec
Q 010467 67 YLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLK 146 (510)
Q Consensus 67 Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp~l~VK 146 (510)
||++||||||||++++++|+++||++|+|++.|+++||+|||++|++++||||++|+++++++||+||+||+||||||||
T Consensus 1 Fl~~spT~~Hav~~~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~lklK 80 (432)
T PF02127_consen 1 FLDKSPTPFHAVANAKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPCLKLK 80 (432)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCCeeec
Confidence 89999999999999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred cCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECC-CCceEEEeeeeCCCeEEcCCCCcccccccccCCCCCC
Q 010467 147 PKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGS-DGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPN 225 (510)
Q Consensus 147 p~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~-~G~~~~~lv~~~~pv~vIp~LaiHL~r~~~~~~~~~n 225 (510)
|||+++++||.+|+||+|||++|+|||||||+|||||+++++ +|+++++||++++||++||+|||||+|+.| +++++|
T Consensus 81 p~~~~~~~g~~~l~ve~YGG~i~~tW~DR~L~laGrV~~k~~~~~~~~~~lv~~~~pv~~IP~LAiHL~r~~n-~~~~~n 159 (432)
T PF02127_consen 81 PNPEYESDGYAQLNVEVYGGGIWHTWFDRPLSLAGRVVVKDGDEGKPESKLVDIDRPVAIIPNLAIHLDREVN-EGFKLN 159 (432)
T ss_dssp EEEEEEETTEEEEEEEEESS--GGGGTTS-EEEEEEEEETTTTTEEEEEESCSTTS-BBBSS---GGGSTTTT-TS-CTT
T ss_pred CCCccccCCEEEEeeEcCCCcccccccCCccceeEEEEEeeCCCCceeEEEEeCCCCEEEeCCchhccccccc-ccCCcc
Confidence 999999999999999999999999999999999999999998 577999999999999999999999999987 678999
Q ss_pred CccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCCceeecccc
Q 010467 226 LETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRL 305 (510)
Q Consensus 226 ~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~e~I~s~rL 305 (510)
+|+||.|+++.......+.+ .+ ..+++|+..|+++|++++||+++||+++||++||+||++++|+++|||+|+||
T Consensus 160 ~q~~l~pi~~~~~~~~~~~~--~~---~~~~~~~~~ll~~la~~~gi~~~dIl~~DL~l~d~~~~~~~G~~~efI~s~rl 234 (432)
T PF02127_consen 160 KQKHLEPILGLSGESSLPED--DE---EDKNRHKPSLLKLLAEELGIEEEDILDFDLYLYDAQPARIVGLDEEFISSPRL 234 (432)
T ss_dssp TSTTSGGEEEECCHHHHHTT--TS---SSSSHHHHHHHHHHHHHHT--GGGCCCEEEEEEEES--EEETTTTSEEEETTH
T ss_pred ccccccCeEeeccccccccc--cc---ccccchhHHHHHHHHHHhCCCHHHhccceEEEEecCCCeEecCchhhhhccCc
Confidence 99999999998751110000 00 01357889999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChhhHhhhccC
Q 010467 306 DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQ 385 (510)
Q Consensus 306 DNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~~~~~~l~~ 385 (510)
|||+|||++|+||++.... .++..+.+.|+++||||||||.|+|||+|+|++++|+||..+++. +++.+++++++
T Consensus 235 Dnl~s~~a~l~Al~~~~~~--~~~~~~~~~v~~~fD~EEiGS~s~~GA~S~fl~~~l~ri~~~~~~---~~~~~~~~l~~ 309 (432)
T PF02127_consen 235 DNLASCYAALEALIDSSND--SLEPEDGTNVVVLFDNEEIGSESRQGADSPFLEDVLERILAALGG---SREFYRRILAN 309 (432)
T ss_dssp HHHHHHHHHHHHHHHHTSS--CCCCSSSEEEEEEESSGGGTSTSTTSTTSTHHHHHHHHHHHHCST---TTHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhcc--cccccCceEEEEEEcccccCCCccccccchHHHHHHHHHHHhcCC---CHHHHHHHhhc
Confidence 9999999999999998642 222346789999999999999999999999999999999999975 55777788999
Q ss_pred cEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhH
Q 010467 386 SFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGP 465 (510)
Q Consensus 386 S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~ 465 (510)
||+||+||+||+||||+++||++|+|.||+|||||+++||||+||+.+.++|+++|++++||||.|++|+|++|||||||
T Consensus 310 S~~lSaD~aHa~HPny~~~~d~~~~p~l~~G~viK~~a~q~yatd~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGp 389 (432)
T PF02127_consen 310 SFLLSADVAHAVHPNYPEKHDPNNQPLLNKGPVIKKNANQRYATDAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGP 389 (432)
T ss_dssp -EEEEE--EEB-BTTSGGGS-TTTSBSTTS-EEEESETTTTSSS-HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHH
T ss_pred CcEECcCcccccCCCcchhccccCCCcCCcccEEEEeCCCCcccCHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 466 ILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 466 i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
|+++++||+|||||+|||+|||+||||.. .|+
T Consensus 390 i~sa~~gi~tvDiG~P~LsMHS~rE~~g~-~D~ 421 (432)
T PF02127_consen 390 ILSARLGIRTVDIGIPQLSMHSIRETAGK-KDI 421 (432)
T ss_dssp HHHHCCTSEEEEEE-EEESTTSSSEEEEH-HHH
T ss_pred HHHHhcCCCEEEechhhhhcccHHHHhcc-ccH
Confidence 99999999999999999999999999999 876
No 4
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=100.00 E-value=2.6e-121 Score=978.71 Aligned_cols=437 Identities=50% Similarity=0.879 Sum_probs=398.7
Q ss_pred cHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccC-CCCCceEE
Q 010467 56 SSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYS-VGNGFHII 134 (510)
Q Consensus 56 ~~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~-~~~g~~ii 134 (510)
.+++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||++|+++. +++||+|+
T Consensus 4 ~~~~~~~~~~~Fl~~s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~iv 83 (465)
T PTZ00371 4 KARELAQEFLNFINKTGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIV 83 (465)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999864 56899999
Q ss_pred EEeccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEcCCCCcccc
Q 010467 135 AAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLD 214 (510)
Q Consensus 135 ~AH~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vIp~LaiHL~ 214 (510)
+||+|||||||||||.++++||.+|+||+|||++|+|||||||+|||||++++ +|+++++||++++||++||+|||||+
T Consensus 84 gaHtDsP~lklKp~~~~~~~g~~~l~ve~YGG~l~~tW~dR~L~laGrV~~~~-~g~~~~~lv~~~~pv~~IP~LaiHl~ 162 (465)
T PTZ00371 84 GAHTDSPCLRLKPNSKVTKEGFQQVGVETYGGGLWHTWFDRDLGLAGRVVYKK-DGKLEEKLIRINKPILRIPNLAIHLQ 162 (465)
T ss_pred EEeccCCCccccCCCcccCCCEEEEeeEECCChhhccccCCCceeeeEEEEee-CCeEEEEEEeCCCCeEECCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999997 58899999999999999999999999
Q ss_pred cccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccC
Q 010467 215 RTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGG 294 (510)
Q Consensus 215 r~~~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~G 294 (510)
|++|++++++|+|++|.|++|..+.++.. +++.+.+.+++|+..|+++|++++||++|||++|||++||+|+++++|
T Consensus 163 r~~n~~~~~~n~~~~l~pi~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~la~~~gv~~~Div~~dL~l~d~~~~~~~G 239 (465)
T PTZ00371 163 TSTERESFKPNKENHLKPIISTEVYEQLN---GKQDNDNSNNNHSAPLLKLIAKELGCSVEDIVDFDLCLMDTQPSCFGG 239 (465)
T ss_pred ccccccCCCcCccCcceeEEecCcccccc---cccccccccccchHHHHHHHHHHcCCCCCceEEEEEEeecCCcceEee
Confidence 99884589999999999999876532110 001111234578889999999999999999999999999999999999
Q ss_pred CCCceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCC
Q 010467 295 ANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHV 374 (510)
Q Consensus 295 l~~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~ 374 (510)
++++||.|+|||||+|||++++||+++..... +.+..+.++++||||||||+|++||+|.|++++|+||+.+++....
T Consensus 240 ~~~e~i~s~rlDnr~~~~~~l~al~~~~~~~~--~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~ 317 (465)
T PTZ00371 240 LNEEFISSPRLDNLGSSFCAFKALTEAVESLG--ENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNN 317 (465)
T ss_pred cCCCeEEEecchhHHHHHHHHHHHHhcccccc--CCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccc
Confidence 99999999999999999999999998753100 0124467778899999999999999999999999999998875110
Q ss_pred -ChhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEe
Q 010467 375 -SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV 453 (510)
Q Consensus 375 -~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~ 453 (510)
+++.+.+++++|++||+||+||+||||+++|+++|.|.||+||+||++++|+|+||+.+.++++++|+++|||||.|+.
T Consensus 318 ~~~~~~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~ 397 (465)
T PTZ00371 318 SSDDSFAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVV 397 (465)
T ss_pred cchhHHHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccCC
Q 010467 454 RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDAG 499 (510)
Q Consensus 454 r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~~ 499 (510)
|+|++||||+|||++++.||||+|||+|+|||||||||++. +|+.
T Consensus 398 ~~d~~~GsTig~i~~s~~Gi~tvDiGiP~l~MHS~rE~~~~-~D~~ 442 (465)
T PTZ00371 398 KNDSPCGSTIGPILSSNLGIRTVDIGIPQLAMHSIREMCGV-VDIY 442 (465)
T ss_pred cCCCCCcchHHHHHHhCCCCcEEEechhhcccccHHHHccH-HHHH
Confidence 99999999999999999999999999999999999999999 8863
No 5
>PRK02813 putative aminopeptidase 2; Provisional
Probab=100.00 E-value=3.5e-118 Score=946.63 Aligned_cols=411 Identities=47% Similarity=0.792 Sum_probs=390.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
.++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||++|+++.+++||+|++|
T Consensus 4 ~~~~~~~~~~fl~~s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~a 83 (428)
T PRK02813 4 ARAFAQDLLDFIDASPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGA 83 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999988655579999999
Q ss_pred eccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEcCCCCcccccc
Q 010467 137 HTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRT 216 (510)
Q Consensus 137 H~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vIp~LaiHL~r~ 216 (510)
|+|||||+|||||.++++||++|+||+|||++|+|||||||+|||||++++++ ++..+|+++++||++||+|||||+|+
T Consensus 84 H~DsP~l~lKp~~~~~~~g~~~l~ve~YGG~~~~tW~Dr~L~laGrV~~~~~~-~~~~~l~~~~~pv~~Ip~LaiHL~~~ 162 (428)
T PRK02813 84 HTDSPGLRVKPNPDTGEAGYLQLNVEVYGGPILNTWLDRDLSLAGRVVLRDGN-KPESRLVNIDRPILRIPNLAIHLNRE 162 (428)
T ss_pred eccCCCeeeccCCcccCCCEEEEeeEECCCchhccccCCCcccceEEEEecCC-EeEEEEEeCCCCeEEeCcchhccCcc
Confidence 99999999999999999999999999999999999999999999999999865 89999999999999999999999999
Q ss_pred cccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCC
Q 010467 217 VNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGAN 296 (510)
Q Consensus 217 ~~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~ 296 (510)
+| +++++|+|.+|.|+++... +.++..|++++++++||++|||++||++++|+||++++|++
T Consensus 163 ~~-~g~~~n~~~~~~Pi~~~~~-----------------~~~~~~~l~~la~~~gi~~~Div~~dl~~~d~~~~~~~G~~ 224 (428)
T PRK02813 163 VN-EGLKLNPQKHLLPILLNGV-----------------GEKEGDFLELLAEELGVDADDILDFDLFLYDTQPGALIGAN 224 (428)
T ss_pred cc-cccCcccccCCcceecccc-----------------cccchHHHHHHHHHcCCCcCCEEEEEEEEEEcccceeeccC
Confidence 88 7899999999999974311 12346799999999999999999999999999999999999
Q ss_pred CceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCCh
Q 010467 297 NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSE 376 (510)
Q Consensus 297 ~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~ 376 (510)
++||+|+|||||+|||++++||+++.. +.+.++++||||||||+|+|||+|+|++++|+||+.+++. ++
T Consensus 225 ~e~i~s~~lDnr~~~~~~l~al~~~~~--------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~---~~ 293 (428)
T PRK02813 225 GEFISSGRLDNLSSCHAGLEALLAAAS--------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGG---DR 293 (428)
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCC--------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcC---ch
Confidence 999999999999999999999998731 4578999999999999999999999999999999998874 77
Q ss_pred hhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecC
Q 010467 377 TSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (510)
Q Consensus 377 ~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D 456 (510)
+++++++++|++||+||+||.||||+++|++.|.+.||+||+||++++|+|+||+.+.++++++|+++|||||.|+.|+|
T Consensus 294 ~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d 373 (428)
T PRK02813 294 EDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSD 373 (428)
T ss_pred HHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 457 MGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 457 ~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
++||||+|+|++++.||||+|||+|+|||||+||||+. +|+
T Consensus 374 ~~gGstig~i~~s~~Gi~tvdiGiP~l~MHS~~E~~~~-~D~ 414 (428)
T PRK02813 374 MPCGSTIGPITAARLGIRTVDVGAPMLAMHSARELAGV-KDH 414 (428)
T ss_pred CCCccHHHHHHHhCCCCcEEEeChhhcccccHHHHccH-HHH
Confidence 99999999999999999999999999999999999999 886
No 6
>PRK02256 putative aminopeptidase 1; Provisional
Probab=100.00 E-value=4.1e-118 Score=950.29 Aligned_cols=439 Identities=22% Similarity=0.326 Sum_probs=399.6
Q ss_pred CCCccccCCCCCcccccccccccHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 010467 34 SSNRYRPRTLHNFSTSGIAQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (510)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g 113 (510)
.++.|++.++|. .++...++.+..++++|++||++||||||||++++++|+++||++|+|++ +++||+|||++|+|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Fl~~sptp~Hav~~~~~~L~~~GF~el~e~~--~l~~g~kyy~~r~~ 78 (462)
T PRK02256 3 KKLTYKKKNAWE--KYSEEEKEEIFAFAEDYKDFLSKCKTEREAVKEIIELAEEKGFINLEEII--GLKPGDKVYAVNRG 78 (462)
T ss_pred ccccccccChhh--hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccc--ccCCCCEEEEEcCC
Confidence 456899999999 44445566677799999999999999999999999999999999999998 68899999999999
Q ss_pred cEEEEEEeCCccCCCCCceEEEEeccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceE
Q 010467 114 SCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFL 193 (510)
Q Consensus 114 ~sliAf~~G~~~~~~~g~~ii~AH~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~ 193 (510)
++|+||++|+++ +++||+|++||||||||||||||+.+++||.+|+||+|||++|+|||||||+|||||+++++. ++.
T Consensus 79 ssliAf~ig~~~-~~~g~~iv~aHtDsP~lklKP~~~~~~~g~~~l~ve~YGG~l~~tW~DRdL~lAGrV~~~~~~-~~~ 156 (462)
T PRK02256 79 KSVALAVIGKEP-LEEGLNIIGAHIDSPRLDLKPNPLYEDEGLALLKTHYYGGIKKYQWVAIPLALHGVVVKKDGT-KVE 156 (462)
T ss_pred CEEEEEEeCCCC-CCCceEEEEEecCCCCceecCCCccccCCeeEeCeEecCCcccccccCCCceeeeEEEEecCC-EEE
Confidence 999999999874 568999999999999999999999999999999999999999999999999999999999732 466
Q ss_pred EEe-eeeCCCeEEcCCCCccccccccc-CCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcC
Q 010467 194 HKL-VKVKRPLLRVPTLAIHLDRTVNK-DGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELG 271 (510)
Q Consensus 194 ~~l-v~~~~pv~vIp~LaiHL~r~~~~-~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~g 271 (510)
.++ +++++|+++||+|||||+|+.|+ +++++|+|+||.|++|..+.+. +. .++|+..|+++|++++|
T Consensus 157 ~~l~~~~~~pi~~IP~LAiHl~r~~n~~~~~~~n~q~~l~pi~~~~~~~~-------~~----~~~~~~~ll~~la~~~~ 225 (462)
T PRK02256 157 IVIGEDENDPVFTISDLLPHLAKDQMEKKASEAIEGEKLNILIGSIPLED-------EE----KEKVKLNILKLLNEKYG 225 (462)
T ss_pred EEecccCCCCeEEcCchhhhhCchhhhccccccCccCCcceeeccCCccc-------cc----cccchHHHHHHHHHHhC
Confidence 777 78999999999999999999862 4789999999999999764211 00 13467789999999999
Q ss_pred CCCCceeEEeeEEEeCCCccccCCCCceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 272 CGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 272 V~~~Div~~dl~l~d~~~~~~~Gl~~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
|+++||++|||++||+||++++|+++|||+|+|||||+|||++++||+++.+ .+.+.++++||||||||+|++
T Consensus 226 v~~~dI~~~DL~l~d~q~~~~~G~~~efI~s~rLDNr~~~~~~leal~~~~~-------~~~~~~~~~~dqEEVGs~ga~ 298 (462)
T PRK02256 226 ITEEDFVSAELEVVPAGKARDVGLDRSLIGAYGQDDRVCAYTSLEALLELEN-------PEKTAVVLLVDKEEIGSEGNT 298 (462)
T ss_pred CCHHHeeeceEEEecCCCcceeccccceeeccccccHHHHHHHHHHHHhccc-------CCCeEEEEEEcccccCCcchh
Confidence 9999999999999999999999999999999999999999999999998742 245789999999999999999
Q ss_pred cCCCcchHHHHHHHHHhccCCCCChhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEE-E-cCCCCccc
Q 010467 352 GAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIK-H-NANQRYAT 429 (510)
Q Consensus 352 GA~s~~l~~~l~ri~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk-~-~~~~~y~t 429 (510)
||+|+|++++|+||..+++. ..+++++.+++++||+||+||+||.||||+++|++.|.|.||+||+|| + +++|+|+|
T Consensus 299 gA~s~~l~~~l~Ri~~~~~p-d~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t 377 (462)
T PRK02256 299 GAQSRFFENFVAELLAKTEG-NYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGA 377 (462)
T ss_pred hhcchhHHHHHHHHHHhcCC-CcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccc
Confidence 99999999999999987763 125678999999999999999999999999999999999999999996 6 59999999
Q ss_pred ---CHHHHHHHHHHHHHCCCCeeEE-EeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccCC
Q 010467 430 ---SGVTAFLFKEIAKLHNLPTQEF-VVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDAG 499 (510)
Q Consensus 430 ---d~~~~a~l~~la~~~~Ip~Q~~-~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~~ 499 (510)
|+.+.++++++|+++|||||.+ +.|+|++||||+|++++ +.||||+|||+|+|||||+||||+. +|+.
T Consensus 378 ~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiGiP~l~MHS~rE~~~~-~D~~ 449 (462)
T PRK02256 378 NDANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFLA-NYGMEVIDCGVALLSMHSPFEIASK-ADIY 449 (462)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHHc-CCCCcEEEechhhhccccHHHHhhH-HHHH
Confidence 9999999999999999999996 66999999999999998 8999999999999999999999999 8863
No 7
>PRK09864 putative peptidase; Provisional
Probab=100.00 E-value=1.7e-52 Score=434.54 Aligned_cols=321 Identities=18% Similarity=0.115 Sum_probs=265.6
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEec
Q 010467 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (510)
Q Consensus 59 ~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~ 138 (510)
++-++|++--.-|.-+..+.+.+++.|++.++ ++++|+.| |++|.. |++ ...+|++|||
T Consensus 4 ~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~d---------------ev~~D~~G-Nli~~~-g~~----~~kvml~AHm 62 (356)
T PRK09864 4 ELLQQLCEASAVSGDEQEVRDILINTLEPCVN---------------EITFDGLG-SFVARK-GNK----GPKVAVVGHM 62 (356)
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHhCC---------------EEEECCCC-CEEEEe-CCC----CcEEEEEecc
Confidence 35677777777777888889999999887775 35678888 899985 522 1259999999
Q ss_pred cCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCc-eEEEeeeeCCCeEEcCCCCccccccc
Q 010467 139 DSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGS-FLHKLVKVKRPLLRVPTLAIHLDRTV 217 (510)
Q Consensus 139 Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~-~~~~lv~~~~pv~vIp~LaiHL~r~~ 217 (510)
|++||+|+. |+++||++ +.+.||+++++ | ++++|.+++++|. + .|+|+..+||+.++.
T Consensus 63 DevG~mV~~---I~~~G~l~--~~~lGG~~~~~-----l-~~q~V~i~t~~g~~v----------~GVig~~~~H~~~~~ 121 (356)
T PRK09864 63 DEVGFMVTH---IDESGFLR--FTTIGGWWNQS-----M-LNHRVTIRTHKGVKI----------PGVIGSVAPHALTEK 121 (356)
T ss_pred cccCEEEEE---ECCCCeEE--EEeCCCcCccc-----c-CCCEEEEEeCCCCEE----------EEEEeCCccccCChh
Confidence 999999998 99999965 69999955554 4 7889999887763 3 699999999998765
Q ss_pred ccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCC
Q 010467 218 NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (510)
Q Consensus 218 ~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~ 297 (510)
+++ +..+.++|++|+|+.+++ +++++||++||++.||..+.. +++
T Consensus 122 ~~~--k~~~~~~l~IDiGa~s~e-------------------------e~~~~GV~vGD~v~~~~~~~~--------l~~ 166 (356)
T PRK09864 122 QKQ--QPLSFDEMFIDIGANSRE-------------------------EVEKRGVEIGDFISPEANFAC--------WGE 166 (356)
T ss_pred Hcc--cCCChhHEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECCCcEE--------EcC
Confidence 422 455668999999998754 667899999999999988865 357
Q ss_pred ceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChh
Q 010467 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (510)
Q Consensus 298 e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~ 377 (510)
+++.|++||||+|||++++++.++++ .+...++++++|||||.|||+.|+..+
T Consensus 167 ~~i~~kalDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i-------------------- 219 (356)
T PRK09864 167 DKVVGKALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHI-------------------- 219 (356)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcC--------------------
Confidence 78999999999999999999988742 245789999999999999999998764
Q ss_pred hHhhhccCcEEEEEecCCCCC-CCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecC
Q 010467 378 SFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (510)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D 456 (510)
.++++|++|++++.+ |.... ......||+||+|+..+++ .++|+.+..+++++|+++|||||..+.
T Consensus 220 ------~PDiaIavDvt~~~d~p~~~~---~~~~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~Ip~Q~~~~--- 286 (356)
T PRK09864 220 ------KPDVVIVLDTAVAGDVPGIDN---IKYPLKLGQGPGLMLFDKR-YFPNQKLVAALKSCAAHNDLPLQFSTM--- 286 (356)
T ss_pred ------CCCEEEEEecccCCCCCCCcc---cccccccCCCCeEEEccCC-ccCCHHHHHHHHHHHHHcCCCceEEEc---
Confidence 457999999999875 43321 2225789999999988775 889999999999999999999999775
Q ss_pred CCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 457 MGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 457 ~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
++||| .+.++.++.|+||+.||+|+||||||.||+++ +|+
T Consensus 287 -~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~-~D~ 327 (356)
T PRK09864 287 -KTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISK-ADY 327 (356)
T ss_pred -CCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEH-HHH
Confidence 34566 67888999999999999999999999999999 886
No 8
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-51 Score=421.49 Aligned_cols=326 Identities=21% Similarity=0.164 Sum_probs=269.9
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEe
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH 137 (510)
.++.++|++--.-|.-+.++.+++++.|++.+ +++.+|+.| ||||.+.|++ +...+||+||
T Consensus 5 ~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~---------------~ev~~D~lG-nlia~~~g~~---g~~~imi~AH 65 (355)
T COG1363 5 LELLKELLEAPGPSGYEEEVRDVLKEELEPLG---------------DEVEVDRLG-NLIAKKGGKN---GPPKVMIAAH 65 (355)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhC---------------CceEEcCCC-cEEEEecCCC---CCccEEEEee
Confidence 44556666665666677778888888887776 457789999 9999876622 1224999999
Q ss_pred ccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEcCCCCccccccc
Q 010467 138 TDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTV 217 (510)
Q Consensus 138 ~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vIp~LaiHL~r~~ 217 (510)
||++||+||. |+++|++ ++.++||+++.++ +++||.+.+++|+. ..++|.+.+||+.++.
T Consensus 66 mDEiG~mV~~---I~~~G~L--r~~~IGG~~~~~~------~gq~v~i~t~~g~~---------i~GvIg~~p~H~~~~~ 125 (355)
T COG1363 66 MDEIGFMVKE---IEDDGFL--RFVPIGGWDPQVL------EGQRVTIHTDKGKK---------IRGVIGSKPPHLLKEE 125 (355)
T ss_pred cceeeeeEEE---ECCCceE--EEEEcCCcChhhc------cCcEEEEEeCCCcE---------EeeeEcccCccccCcc
Confidence 9999999998 9999996 5699999776665 68899999888742 2699999999998654
Q ss_pred ccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCC
Q 010467 218 NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (510)
Q Consensus 218 ~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~ 297 (510)
. +..+..+.++|++|+|+.+++ .++++||++||+++||..+..+ ++
T Consensus 126 ~-~~~~~~~~~el~iDiga~ske-------------------------ea~~lGI~vGd~v~~~~~~~~l--------~~ 171 (355)
T COG1363 126 A-ERKKPPEWDELFIDIGASSKE-------------------------EAEELGIRVGDFVVFDPRFREL--------AN 171 (355)
T ss_pred c-cccCCCchhhEEEECCcCCHH-------------------------HHHhcCCCCCCEEEEcCceEEe--------cC
Confidence 2 111345669999999998764 6789999999999999999884 56
Q ss_pred ceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChh
Q 010467 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (510)
Q Consensus 298 e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~ 377 (510)
.+|.|++||||+||+++|+++.++... +.+.+.++++++|||||.+||+.++..+-
T Consensus 172 ~~i~skalDdR~gva~lle~lk~l~~~-----~~~~~vy~v~tvqEEVGlrGA~~~a~~i~------------------- 227 (355)
T COG1363 172 GRVVSKALDDRAGVAALLELLKELKGI-----ELPADVYFVASVQEEVGLRGAKTSAFRIK------------------- 227 (355)
T ss_pred CcEEeeeccchHhHHHHHHHHHHhccC-----CCCceEEEEEecchhhccchhhccccccC-------------------
Confidence 899999999999999999999998421 24567899999999999999999987644
Q ss_pred hHhhhccCcEEEEEecCCCCC-CCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecC
Q 010467 378 SFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (510)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D 456 (510)
++++|++|++++.+ |..+ .....||+||+|+..++. ...|+.+..+|.++|+++|||||.++.
T Consensus 228 -------pd~aiavd~~~~~d~~~~~-----~~~~~lg~Gp~i~~~D~~-~~~~~~l~~~L~~~A~~~~Ip~Q~~v~--- 291 (355)
T COG1363 228 -------PDIAIAVDVTPAGDTPGVP-----KGDVKLGKGPVIRVKDAS-GIYHPKLRKFLLELAEKNNIPYQVDVS--- 291 (355)
T ss_pred -------CCEEEEEecccccCCCCCc-----ccccccCCCCEEEEEcCC-CCCCHHHHHHHHHHHHHcCCCeEEEec---
Confidence 47999999999986 5554 346899999999998876 566999999999999999999999986
Q ss_pred CCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 457 MGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 457 ~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
++||| .+.++.++.||||+.||+|++||||+.|++++ +|+
T Consensus 292 -~~ggTDA~a~~~~g~gvpta~Igip~ry~Hs~~e~~~~-~D~ 332 (355)
T COG1363 292 -PGGGTDAGAAHLTGGGVPTALIGIPTRYIHSPVEVAHL-DDL 332 (355)
T ss_pred -CCCCccHHHHHHcCCCCceEEEecccccccCcceeecH-HHH
Confidence 44555 77999999999999999999999999999999 875
No 9
>PRK09961 exoaminopeptidase; Provisional
Probab=100.00 E-value=5.6e-50 Score=415.73 Aligned_cols=316 Identities=14% Similarity=0.046 Sum_probs=256.3
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEec
Q 010467 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (510)
Q Consensus 59 ~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~ 138 (510)
++-++|++.-.-|..|-.+.+.+++.|++.|+. +.+|+.| |++|...|++ ...+|+.|||
T Consensus 4 ~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~---------------v~~D~~G-nvi~~~~g~~----~~~v~l~aHm 63 (344)
T PRK09961 4 SLLKALSEADAIASSEQEVRQILLEEADRLQKE---------------VRFDGLG-SVLIRLNEST----GPKVMICAHM 63 (344)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCE---------------EEECCCC-CEEEEEcCCC----CCEEEEEecc
Confidence 356788888888888999999999999888853 3457888 8999754421 2259999999
Q ss_pred cCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEcCCCCcccccccc
Q 010467 139 DSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVN 218 (510)
Q Consensus 139 Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vIp~LaiHL~r~~~ 218 (510)
|+++|+|+. |+++||++ +.+.||++++. | +++||.+.+++|+. ..|+|. .+.+
T Consensus 64 Devg~~V~~---I~~~G~l~--~~~vGG~~~~~-----~-~~~~v~i~~~~g~~---------i~Gvi~-------~~~~ 116 (344)
T PRK09961 64 DEVGFMVRS---ISREGAID--VLPVGNVRMAA-----R-QLQPVRITTREECK---------IPGLLN-------GDRQ 116 (344)
T ss_pred ceeceEEEE---ECCCceEE--EEeCCCccccc-----c-CCCEEEEEeCCCCE---------eeEEEC-------hhhc
Confidence 999999998 99999965 69999965555 3 68899998877641 157771 1111
Q ss_pred cCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCCc
Q 010467 219 KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNE 298 (510)
Q Consensus 219 ~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~e 298 (510)
+ .+.++|++|+|+.+++ +++++||++||+++||..++.. ++.
T Consensus 117 ----~-~~~~~l~iDiG~~s~e-------------------------e~~~~GI~~Gd~v~~~~~~~~~--------~~~ 158 (344)
T PRK09961 117 ----G-NDVSAMRVDIGARSYD-------------------------EVMQAGIRPGDRVTFDTTFQVL--------PHQ 158 (344)
T ss_pred ----C-CCHHHEEEEcCCCCHH-------------------------HHHhcCCCCCCEEEEcceeEEe--------cCC
Confidence 3 3558999999998753 5678999999999999999874 467
Q ss_pred eeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChhh
Q 010467 299 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETS 378 (510)
Q Consensus 299 ~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~~ 378 (510)
++.|++||||+|||+++++|+++++. +.....++++++|||||++|+++|++.+
T Consensus 159 ~i~gkalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i--------------------- 212 (344)
T PRK09961 159 RVMGKAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAV--------------------- 212 (344)
T ss_pred EEEEeechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhcc---------------------
Confidence 89999999999999999999988542 1245678999999999999999998764
Q ss_pred HhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecCCC
Q 010467 379 FECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 458 (510)
Q Consensus 379 ~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~ 458 (510)
.++++|++|+++ +|++++ .+..+.+.||+||+|+.++. +|++|+.+.++++++|++++||||..+.. +
T Consensus 213 -----~pd~~I~vDv~~--~~d~~~-~~~~~~~~lg~Gp~i~~~D~-~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~---g 280 (344)
T PRK09961 213 -----SPDVAIVLDTAC--WAKNFD-YGAANHRQIGNGPMLVLSDK-SLIAPPKLTAWIETVAAEIGIPLQADMFS---N 280 (344)
T ss_pred -----CCCEEEEEeccC--CCCCCC-CCCCcccccCCCceEEEccC-CcCCCHHHHHHHHHHHHHcCCCcEEEecC---C
Confidence 458999999997 566665 34445689999999998855 59999999999999999999999986542 3
Q ss_pred CCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 459 CGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
||++.+.++.++.|+||+++|+|+|||||++|++++ +|+
T Consensus 281 gGTDa~~~~~~~~Giptv~ig~p~ry~Hs~~E~v~~-~D~ 319 (344)
T PRK09961 281 GGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADC-RDI 319 (344)
T ss_pred CcchHHHHHHhCCCCCEEEechhhhcccChhheEEH-HHH
Confidence 445578898888999999999999999999999999 875
No 10
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=100.00 E-value=9.5e-50 Score=414.08 Aligned_cols=321 Identities=12% Similarity=0.039 Sum_probs=260.5
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEecc
Q 010467 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (510)
Q Consensus 60 ~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~D 139 (510)
+-++|++--.-|.-+-.+.+.+++.|++.|+ ++++|+.| |++|...|+.. +.+.+|++||||
T Consensus 3 ~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~---------------~v~~D~~G-Nvia~~~g~~~--~~~~vml~AHmD 64 (350)
T TIGR03107 3 KIKEVTELQGTSGFEHPIRDYLRQDITPLVD---------------QVETDGLG-GIFGIKESQVE--NAPRVMVAAHMD 64 (350)
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC---------------EEEECCCC-CEEEEecCCCC--CCCEEEEEeccc
Confidence 4566766666777788888889998887775 35678888 89998655311 122599999999
Q ss_pred CCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCc-eEEEeeeeCCCeEEcCCCCcccccccc
Q 010467 140 SPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGS-FLHKLVKVKRPLLRVPTLAIHLDRTVN 218 (510)
Q Consensus 140 sp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~-~~~~lv~~~~pv~vIp~LaiHL~r~~~ 218 (510)
+++|+|+. |+++||++ +.+.||+++++ | ++++|.+.+++|+ + .++|+..+||+.++..
T Consensus 65 eVGf~V~~---I~~~G~l~--~~~vGG~~~~~-----l-~gq~V~i~t~~g~~i----------~GViG~~~~Hl~~~~~ 123 (350)
T TIGR03107 65 EVGFMVSQ---IKPDGTFR--VVELGGWNPLV-----V-SSQRFTLFTRKGKKY----------PVISGSVPPHLLRGSS 123 (350)
T ss_pred EeCEEEEE---ECCCceEE--EEeCCCccccc-----c-CCcEEEEEeCCCCEE----------EEEEeCCcccccChhh
Confidence 99999998 99999965 69999955444 4 7899999877774 3 6999999999986533
Q ss_pred -cCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccccCCCC
Q 010467 219 -KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (510)
Q Consensus 219 -~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~~Gl~~ 297 (510)
++ +..+.++|++|+|+.+++ +++++||++||+|.++..+.... ++
T Consensus 124 ~~~--~~~~~~~l~IDiGa~ske-------------------------e~~~~GI~vGd~v~~~~~~~~~~-------~~ 169 (350)
T TIGR03107 124 GGP--QLPAVSDILFDGGFTNKD-------------------------EAWSFGVRPGDVIVPQTETILTA-------NG 169 (350)
T ss_pred ccc--ccCChhhEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECCCeEEEc-------CC
Confidence 22 444568999999998754 67889999999999998886531 45
Q ss_pred ceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChh
Q 010467 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (510)
Q Consensus 298 e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~ 377 (510)
.++.|++||||+|||++++++.++++. +.+...++++++|||||.||++.|+..
T Consensus 170 ~~i~~kalDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~--------------------- 223 (350)
T TIGR03107 170 KNVISKAWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTK--------------------- 223 (350)
T ss_pred CEEEEeccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhh---------------------
Confidence 679999999999999999999988642 134578999999999999999998765
Q ss_pred hHhhhccCcEEEEEecCCCCC-CCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeecC
Q 010467 378 SFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (510)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D 456 (510)
+.++++|++|++++.+ |+.. + ..||+||+|+..+++ ...|+.+.++++++|+++|||||. ..
T Consensus 224 -----i~pD~aI~vDv~~~~d~~~~~------~-~~lg~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~I~~Q~-~~--- 286 (350)
T TIGR03107 224 -----FNPDIFFAVDCSPAGDIYGDQ------G-GKLGEGTLLRFFDPG-HIMLPRMKDFLLTTAEEAGIKYQY-YV--- 286 (350)
T ss_pred -----CCCCEEEEEecCCcCCCCCCC------c-cccCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEE-ec---
Confidence 4558999999999875 3322 1 689999999988775 888999999999999999999998 43
Q ss_pred CCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 457 MGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 457 ~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.+||| .+.++.++.|+||+.||+|+|||||+.|++++ +|+
T Consensus 287 -~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~-~D~ 327 (350)
T TIGR03107 287 -AKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSI-DDF 327 (350)
T ss_pred -CCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeH-HHH
Confidence 34566 55677888999999999999999999999999 885
No 11
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=100.00 E-value=2.5e-48 Score=394.88 Aligned_cols=283 Identities=23% Similarity=0.225 Sum_probs=220.4
Q ss_pred EEEEEEeCCccCCCCCceEEEEeccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEE
Q 010467 115 CLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLH 194 (510)
Q Consensus 115 sliAf~~G~~~~~~~g~~ii~AH~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~ 194 (510)
|+||.+.|++ +...+|+.|||||+||+|+. |+++||++ +.+.||+.++.+ ++++|.+.+++|.+
T Consensus 2 nvi~~~~g~~---~~~~vmi~AHmDEiG~iV~~---I~~~G~l~--~~~lGg~~~~~l------~gq~v~i~~~~g~i-- 65 (292)
T PF05343_consen 2 NVIARKKGKE---GGPKVMIAAHMDEIGFIVRH---IDDDGFLR--FVPLGGIDPRVL------PGQRVRIHTRDGDI-- 65 (292)
T ss_dssp -EEEEECSSC---SSSEEEEEEE--B-EEEEEE---EETTSEEE--EEEESS--GGGT------TTEEEEEEETTEEE--
T ss_pred cEEEEECCCC---CCceEEEEEccceeeEEEEE---ECCCCEEE--EEEcCCcCcccc------CCCEEEEEcCCcEE--
Confidence 8999987722 23359999999999999998 99999965 689999777665 57788888777744
Q ss_pred EeeeeCCCeEEcCCCCcccccccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCC
Q 010467 195 KLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGT 274 (510)
Q Consensus 195 ~lv~~~~pv~vIp~LaiHL~r~~~~~~~~~n~~~~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~ 274 (510)
.++|...+||+.++..++ +..+.++|++|+|+.+++ +++++||++
T Consensus 66 --------~Gvig~~~~H~~~~~~~~--~~~~~~~l~iDiGa~s~e-------------------------e~~~~GV~i 110 (292)
T PF05343_consen 66 --------PGVIGSKPPHLQSEEERK--KVPKWDDLFIDIGASSKE-------------------------EVEELGVRI 110 (292)
T ss_dssp --------EEEEEE--GGGCCHHHHH--STTEGGGEEEECSGSSHH-------------------------HHHHTTS-T
T ss_pred --------EEEEcCCCCcccChhhcc--cCCCcceEEEEeccCCHH-------------------------HHHhCCCCC
Confidence 699999999998864322 344569999999997753 678999999
Q ss_pred CceeEEeeEEEeCCCccccCCCCceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCC
Q 010467 275 DDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAG 354 (510)
Q Consensus 275 ~Div~~dl~l~d~~~~~~~Gl~~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~ 354 (510)
||++.||..+... ++.+|.|++||||+|||++++++..+++. . .+...+++|++|||||.+|++.|+
T Consensus 111 Gd~v~~~~~~~~~--------~~~~i~gkalDdR~g~~~lle~l~~l~~~--~---~~~~v~~v~tvqEEvG~rGA~~aa 177 (292)
T PF05343_consen 111 GDPVVFDPPFREL--------GNGRIVGKALDDRAGCAVLLELLRELKEK--E---LDVDVYFVFTVQEEVGLRGAKTAA 177 (292)
T ss_dssp T-EEEES---EEE--------TTTEEEETTHHHHHHHHHHHHHHHHHTTS--S----SSEEEEEEESSCTTTSHHHHHHH
T ss_pred CCEEeecCCeEEe--------CCCEEEEEeCCchhHHHHHHHHHHHHhhc--C---CCceEEEEEEeeeeecCcceeecc
Confidence 9999999999884 46679999999999999999999998653 1 236789999999999999998775
Q ss_pred CcchHHHHHHHHHhccCCCCChhhHhhhccCcEEEEEecCCCCC-CCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHH
Q 010467 355 APTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVT 433 (510)
Q Consensus 355 s~~l~~~l~ri~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~ 433 (510)
.. +.++++|++|++++.+ |...+. ...||+||+|++.+.. ...|+.+
T Consensus 178 ~~--------------------------i~PD~ai~vD~~~a~d~~~~~~~-----~~~lG~Gp~i~~~D~~-~i~~~~l 225 (292)
T PF05343_consen 178 FR--------------------------IKPDIAIAVDVTPAGDTPGSDEK-----EQGLGKGPVIRVGDSS-MIPNPKL 225 (292)
T ss_dssp HH--------------------------H-CSEEEEEEEEEESSSTTSTTT-----TSCTTS-EEEEEEETT-EESHHHH
T ss_pred cc--------------------------cCCCEEEEEeeeccCCCCCCchh-----hccCCCCcEEEEccCC-CCCCHHH
Confidence 33 5678999999999986 555432 1229999999999876 8889999
Q ss_pred HHHHHHHHHHCCCCeeEEEeecCCCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 434 AFLFKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 434 ~a~l~~la~~~~Ip~Q~~~~r~D~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
..+++++|++++||||..+. .+||| .+.++.++.|+||+.||+|+|||||+.|++++ +|+
T Consensus 226 ~~~l~~~A~~~~Ip~Q~~~~----~~ggTDa~~~~~~~~Gi~t~~i~iP~ry~Hs~~e~~~~-~Di 286 (292)
T PF05343_consen 226 VDKLREIAEENGIPYQREVF----SGGGTDAGAIQLSGGGIPTAVISIPCRYMHSPVEVIDL-DDI 286 (292)
T ss_dssp HHHHHHHHHHTT--EEEEEE----SSSSSTHHHHHTSTTSSEEEEEEEEEBSTTSTTEEEEH-HHH
T ss_pred HHHHHHHHHHcCCCeEEEec----CCcccHHHHHHHcCCCCCEEEEecccccCCCcceEEEH-HHH
Confidence 99999999999999999765 35666 67888999999999999999999999999999 886
No 12
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=100.00 E-value=1.3e-45 Score=382.58 Aligned_cols=319 Identities=18% Similarity=0.092 Sum_probs=255.9
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|+++-.-|..+..+.+.+++.|++.||+ +.+|+.| |++|...|+.. ...+|+.|
T Consensus 5 ~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~e---------------v~~D~~G-nlia~~~g~~~---~~~v~l~a 65 (343)
T TIGR03106 5 LTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIE---------------YELTRRG-AIRATLPGREA---TPARAVVT 65 (343)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCe---------------EEECCCe-EEEEEECCCCC---CCeEEEEE
Confidence 45567788887777788899999999999988873 3346777 99998766321 22599999
Q ss_pred eccCCCceeccCcccCCCCeEEEEEEEeCCccccccccceeeeeeEEEEECCCCceEEEeeeeCCCeEEc-C-CCCcccc
Q 010467 137 HTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRV-P-TLAIHLD 214 (510)
Q Consensus 137 H~Dsp~l~VKp~~~i~~~G~~~l~v~~YGG~~~~tW~dR~L~laGrV~vk~~~G~~~~~lv~~~~pv~vI-p-~LaiHL~ 214 (510)
|||+++|+|+. |+++||++ +.+.||+++++. ++.+|.+.+.+|++ .|+| + ..+||+.
T Consensus 66 HmDevG~~V~~---I~~~G~l~--~~~iGG~~~~~l------~g~~v~i~t~~g~~----------~Gvi~~~~~~~H~~ 124 (343)
T TIGR03106 66 HLDTLGAMVRE---LKDNGRLE--LVPIGHWSARFA------EGARVTIFTDSGEF----------RGTILPLKASGHAF 124 (343)
T ss_pred eeccccceeeE---ECCCCeEE--EEecCCCcccce------eCCEEEEEeCCCeE----------EEEECCCCCCCccC
Confidence 99999999998 99999965 699999666653 67789888766544 6999 7 9999998
Q ss_pred cccccCCCCCCCcc--ceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeEEEeCCCccc
Q 010467 215 RTVNKDGFKPNLET--QLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCL 292 (510)
Q Consensus 215 r~~~~~~~~~n~~~--~L~p~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~~Div~~dl~l~d~~~~~~ 292 (510)
++.+++ +..+.+ +|++|+|+.+++ +++++||++||+++|+..+..
T Consensus 125 ~~~~~~--~~~~~~~~~l~iDiG~~s~e-------------------------e~~~lGV~~Gd~v~~~~~~~~------ 171 (343)
T TIGR03106 125 NEEIDS--QPTGWDHVEVRVDARASCRA-------------------------DLVRLGISVGDFVAFDPQPEF------ 171 (343)
T ss_pred ChHHcc--CCCCCcccEEEEECCcCCHH-------------------------HHHHcCCCCCCEEEECCccEE------
Confidence 754322 344557 999999998754 678899999999999988765
Q ss_pred cCCCCceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCC
Q 010467 293 GGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHE 372 (510)
Q Consensus 293 ~Gl~~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~ 372 (510)
++++++.|+++|||+||+++++++.++..... ......+++++.||||| +| |+..+.|++
T Consensus 172 --~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~---~~~~~v~~~~t~qEEvG-~g---aa~~i~pd~----------- 231 (343)
T TIGR03106 172 --LANGFIVSRHLDDKAGVAALLAALKAIVEHKV---PLPVDVHPLFTITEEVG-SG---ASHALPPDV----------- 231 (343)
T ss_pred --ecCCEEEEEecccHHhHHHHHHHHHHHHhcCC---CCCceEEEEEECCcccC-cc---chhcccHhh-----------
Confidence 34679999999999999999999998853211 12456889999999999 55 444444431
Q ss_pred CCChhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEE
Q 010467 373 HVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFV 452 (510)
Q Consensus 373 ~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~ 452 (510)
..+|++|++++ .|. ...||+||+|+..+++ +..|+.+..+++++|+++|||||..+
T Consensus 232 -------------a~~i~vd~~~~-~p~---------~~~lg~Gp~i~~~d~~-~~~~~~l~~~l~~~A~~~~Ip~Q~~~ 287 (343)
T TIGR03106 232 -------------AELVSVDNGTV-APG---------QNSSEHGVTIAMADSS-GPFDYHLTRKLIRLCQDHGIPHRRDV 287 (343)
T ss_pred -------------hccEEEEeccc-CCC---------CCcCCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 13499999997 443 2679999999988775 88899999999999999999999987
Q ss_pred eecCCCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 453 VRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 453 ~r~D~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
. ++||| .+.++.++.|+||+.||+|+||||| .|++++ +|+
T Consensus 288 ~----~~~gtDa~~~~~~~~Gi~t~~i~iP~Ry~Hs-~e~~~~-~D~ 328 (343)
T TIGR03106 288 F----RYYRSDAASAVEAGHDIRTALVTFGLDASHG-YERTHI-DAL 328 (343)
T ss_pred c----CCCCChHHHHHHcCCCCCEEEeeccccchhh-hhhccH-HHH
Confidence 5 34566 6788899999999999999999999 999999 886
No 13
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.58 E-value=0.00046 Score=64.45 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=95.1
Q ss_pred Cceeecccc-hhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCC
Q 010467 297 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVS 375 (510)
Q Consensus 297 ~e~I~s~rL-DNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~ 375 (510)
++.+.+++. |+..++.+++.|+..+.+.. .......+++++..||+|+.. |+ +.++..
T Consensus 26 ~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~~--g~---------~~l~~~------- 84 (189)
T PF01546_consen 26 DGRLYGRGADDMKGGIAAMLAALKALKESG---DDLPGNIIFLFTPDEEIGSIG--GA---------KHLLEE------- 84 (189)
T ss_dssp TTEEESTTTTTTHHHHHHHHHHHHHHHHTT---TTCSSEEEEEEESTCCGTSTT--HH---------HHHHHH-------
T ss_pred CCEEEcCCcCCCcccHHHHHHHHHHHHhcc---ccccccccccccccccCCCcc--hh---------hhhhhh-------
Confidence 456777666 77888988888888774211 123557888999999999874 22 111111
Q ss_pred hhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCC-CeeEEEee
Q 010467 376 ETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNL-PTQEFVVR 454 (510)
Q Consensus 376 ~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~I-p~Q~~~~r 454 (510)
.....+..++++..|.+... .. + ...++.....+++.+++.+. +......
T Consensus 85 --~~~~~~~~~~~~~~e~~~~~------~~--------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (189)
T PF01546_consen 85 --GAFFGLHPDYVIIGEPTGKG------GV--------G------------SDNDPPLVQALQAAAQEVGGEPPEPVAS- 135 (189)
T ss_dssp --CEEEEEEESEEEECECETTS------EE--------E------------HCTCHHHHHHHHHHHHHTTSSEEEEEEE-
T ss_pred --cccccccccccccccccccc------cc--------c------------ccccHHHHHHHHHHHHHHhhccccccce-
Confidence 00111333444444433211 00 0 33477799999999999987 5454443
Q ss_pred cCCCCCCChhHHHhc--CCCCcEEEecccccccccHHHhhcccccC
Q 010467 455 NDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 455 ~D~~gGsTig~i~as--~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
+|+|.+++++. ..|++++-+|.-.-.+|++.|-++. +|+
T Consensus 136 ----~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~-~~l 176 (189)
T PF01546_consen 136 ----GGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDI-EDL 176 (189)
T ss_dssp ----SSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEH-HHH
T ss_pred ----eccccchhhhhhhccccceeeeCCCCCCCCCCCcEecH-HHH
Confidence 57787777775 6899999999988999999999887 553
No 14
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=96.97 E-value=0.017 Score=61.80 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 459 CGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.|||.+.+++. .|+|++.+|.-.-.+|++.|-+.+ +|+
T Consensus 355 ~ggtDa~~~~~-~Gip~~~~G~G~~~aHt~dE~v~i-~~l 392 (410)
T TIGR01882 355 RGGTDGSQLSY-MGLPTPNIFAGGENMHGRFEYISV-DNM 392 (410)
T ss_pred ceechHHHHHh-CCCCCCeEcCCcccCcCCceEEEH-HHH
Confidence 57899888865 899999999977779999999988 654
No 15
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=95.92 E-value=0.0093 Score=62.71 Aligned_cols=45 Identities=18% Similarity=-0.084 Sum_probs=34.9
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCcc
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 352 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~G 352 (510)
++.||..|+.++|+++..+... .......+++++.||+|+.|++-
T Consensus 140 GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~fv~~~~EE~Gl~GS~~ 184 (346)
T PRK10199 140 GMDDNAAGLGVMLELAERLKNV-----PTEYGIRFVATSGEEEGKLGAEN 184 (346)
T ss_pred CccccHHHHHHHHHHHHHHhhC-----CCCCcEEEEEECCcccCcHHHHH
Confidence 4579999999999999887532 12345788999999999876553
No 16
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=95.34 E-value=0.016 Score=60.25 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
|..+...+++.+++.|.+++... .+|||.+.+++. .|||++.+|++...+||+.|-+++ +|+
T Consensus 288 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~giP~v~~G~g~~~~Hs~~E~v~i-~~~ 349 (361)
T TIGR01883 288 QHPLMNIFKKAAKKIGLKTSEIF-----SGGGSDANVLNE-KGVPTVNLSAGYVHAHTEKETISI-EQL 349 (361)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEe-----cCcccHHHHHhh-CCCceEEECCCcccCcCcceeEEH-HHH
Confidence 55778888999999998877532 358888877764 699999999999999999999998 664
No 17
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=95.27 E-value=0.0061 Score=57.07 Aligned_cols=149 Identities=14% Similarity=-0.018 Sum_probs=81.8
Q ss_pred eecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChhhH
Q 010467 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 379 (510)
Q Consensus 300 I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~~~ 379 (510)
.+.++.||-+||.++|+....+.... ...+....+++|+.||.|..|++.-. ++--
T Consensus 20 ~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~--------~~~~------------- 75 (179)
T PF04389_consen 20 WSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFV--------EHDH------------- 75 (179)
T ss_dssp SSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHH--------HHHH-------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHH--------Hhhh-------------
Confidence 55678999999999999888775421 11345788899999998887665321 1100
Q ss_pred hhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEe-ecCCC
Q 010467 380 ECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV-RNDMG 458 (510)
Q Consensus 380 ~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip~Q~~~~-r~D~~ 458 (510)
...-.--++|-.|+.-...+.+ .+..... ....+.+.+.++++.....++.... .....
T Consensus 76 ~~~~~~~~~inlD~~g~~~~~~----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
T PF04389_consen 76 EELDNIAAVINLDMIGSGDPTV----------------YSEGSPS----LPSRLEAYLSSFKQPYGSSLGPDVPPEKPTF 135 (179)
T ss_dssp CHHHHEEEEEEECSSBSSSSEE----------------EEEEGGG----HHHHHHHHHHHHHHHHHCHTSSECEEEESST
T ss_pred cccccceeEEeccccccCcccc----------------eeeeecc----ccchhhhhhhhhhhhhhcccccccccccCCC
Confidence 0011124688899865432221 1111110 0112455566665543333332222 12234
Q ss_pred CCCChhHHHhcCCCCcEEEeccc---ccccccHHHhhcc
Q 010467 459 CGSTIGPILASGVGIRTVDCGIA---QLSMHRYLNFNYF 494 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGiP---~lsMHS~rE~~~~ 494 (510)
+++.--++. ..|||++.+.-= ...-|++..+++.
T Consensus 136 ~~sD~~~F~--~~gip~~~~~~~~~~~~~~Ht~~Dt~~~ 172 (179)
T PF04389_consen 136 GGSDHYPFS--KAGIPAVTLSSTDGYNPYYHTPEDTPDN 172 (179)
T ss_dssp TSSTCHHHH--TTT-EEEEEEESSSSGTTTTSTT-SGGG
T ss_pred CCCCcHhhh--cCCEeEEEEEecCCCCCCCCCcccChhh
Confidence 455566777 689999877543 3566887766654
No 18
>PRK05469 peptidase T; Provisional
Probab=92.19 E-value=0.15 Score=54.33 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.|..+.+.+++.+++.|++.+... .+|||.+.+.+. .|+|++.+|++-..+|++.|.+++ +|+
T Consensus 328 ~~~~lv~~~~~a~~~~g~~~~~~~-----~~ggtD~~~~~~-~giP~v~~gpG~~~~H~~~E~v~i-~~l 390 (408)
T PRK05469 328 PHPHIVDLAKQAMEDLGIEPIIKP-----IRGGTDGSQLSF-MGLPCPNIFTGGHNFHGKFEFVSL-ESM 390 (408)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEec-----CCCcccHHHHhh-CCCceEEECcCcccCcCcceeeEH-HHH
Confidence 467888899999998888866432 257788877764 799999999999899999999988 654
No 19
>PRK08554 peptidase; Reviewed
Probab=91.65 E-value=0.17 Score=54.81 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.|..+.+.+++++++.|++.+... .+|+|.+.+++. .|+|++++|+---.||++.|-+.+ +++
T Consensus 360 ~~~~lv~~~~~~~~~~g~~~~~~~-----~~GgtDa~~~~~-~Gip~v~~Gp~~~~~H~~~E~v~i-~~l 422 (438)
T PRK08554 360 PDEEIVKVALRVLKELGEDAEPVE-----GPGASDSRYFTP-YGVKAIDFGPKGGNIHGPNEYVEI-DSL 422 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEe-----cCCchHHHHHHh-cCCCceEECCCCCCCCCCcceEEH-HHH
Confidence 477888899999999998877654 368899999875 799999999966789999999988 543
No 20
>PRK13381 peptidase T; Provisional
Probab=91.28 E-value=0.22 Score=53.01 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.|..+...+++.+++.|++.+... .+|+|.+.++.. .|||++.+|++...+|++.|-+++ +|+
T Consensus 326 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~GpG~~~aH~~dE~v~i-~~l 388 (404)
T PRK13381 326 DDRRAVDLAFDAMKELGIEPKVIP-----MRGGTDGAALSA-KGLPTPNLFTGAHNFHSRFEFLPV-SSF 388 (404)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecc-----CCccchHHHHhc-CCCCeEEECccccCCcCcceeEEH-HHH
Confidence 367778888888888888765432 247788777764 699999999999999999999998 664
No 21
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=90.62 E-value=0.39 Score=51.46 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc--ccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l--sMHS~rE~~~~~~D~ 498 (510)
|..+...+++.|++.+.++... ..+|||.+.+++. .+|++.+-.|.. -+|++.|-++. +|+
T Consensus 326 d~~lv~~l~~a~~~~~~~~~~~-----~sggg~Da~~~~~--~vP~~~ifgp~~~g~~H~p~E~v~~-e~l 388 (406)
T TIGR03176 326 NKEIVAIIEQLAKAEKLNYRLM-----HSGAGHDAQIFAP--RVPTAMIFVPSIGGISHNPAERTNI-EDL 388 (406)
T ss_pred CHHHHHHHHHHHHHcCCCceec-----CcccHHHHHHHHH--HCCEEEEEEeCCCCCCCCccccCCH-HHH
Confidence 6788899999999988765432 2468888888775 389988776653 47999999998 665
No 22
>PRK07473 carboxypeptidase; Provisional
Probab=89.88 E-value=0.27 Score=51.99 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEE-ecccccccccHHHhhcccccC
Q 010467 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 431 ~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiD-iGiP~lsMHS~rE~~~~~~D~ 498 (510)
..+.+.+++.++..|++..... .+|+|.+.+++. .|||+++ +|+---.+|++-|-+++ +|+
T Consensus 300 ~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~g~Gpg~~~~H~~dE~v~i-~~l 361 (376)
T PRK07473 300 MALYEKARAIAGQLGLSLPHGS-----AGGGSDGNFTGA-MGIPTLDGLGVRGADYHTLNEHIEV-DSL 361 (376)
T ss_pred HHHHHHHHHHHHHcCCCCcccc-----CccccHhhhHHh-cCCCEEEeccCCCCCCCCCCceEec-ccH
Confidence 3577888899999998876432 367888988875 6999998 98876779999999998 664
No 23
>PRK07338 hypothetical protein; Provisional
Probab=86.76 E-value=0.64 Score=49.21 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEE-ecccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiD-iGiP~lsMHS~rE~~~~~~D~ 498 (510)
+..+...+++.+++.|++..... .+|+|.+.+++. .|+|+++ +|.---.+|++.|-+++ +|+
T Consensus 321 ~~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~~Gpg~~~~H~~~E~v~i-~~l 383 (402)
T PRK07338 321 QQRLFEAVQACGAALGLTIDWKD-----SGGVCDGNNLAA-AGLPVVDTLGVRGGNIHSEDEFVIL-DSL 383 (402)
T ss_pred hHHHHHHHHHHHHHcCCCccccc-----CCccchHHHHhh-cCCCeEeccCCCCCCCCCccceEeh-hhH
Confidence 44677888999999898765432 367888888765 7999996 88876778999999998 654
No 24
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=86.22 E-value=1.4 Score=46.56 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=46.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCcccccc--c--cccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEE
Q 010467 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNEN--D--EWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (510)
Q Consensus 60 ~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~--~--~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~ 135 (510)
++..|--=.-.||-+..+.++++++|++.||+.-... . .|..+++.+.+-..-|.|+||...|+. ...+|++
T Consensus 40 ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~----~~~Ill~ 115 (346)
T PRK10199 40 IATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA----PQQIIIM 115 (346)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC----CCeEEEE
Confidence 4443333334556667789999999999999632110 0 122222222111123457999876643 2359999
Q ss_pred EeccCCC
Q 010467 136 AHTDSPC 142 (510)
Q Consensus 136 AH~Dsp~ 142 (510)
||+|+..
T Consensus 116 AH~DTV~ 122 (346)
T PRK10199 116 AHLDTYA 122 (346)
T ss_pred EEcCcCC
Confidence 9999974
No 25
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=84.67 E-value=0.6 Score=49.95 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHHHHHHhhc-cCCC------------hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEee-cCcEEEEEEeCCc
Q 010467 59 SIVGDLLDYLN-ESWT------------PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTR-NMSCLVAFAVGQK 124 (510)
Q Consensus 59 ~~a~~~~~Fl~-~s~T------------~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r-~g~sliAf~~G~~ 124 (510)
.+.+.|++|.. .|+| +....+.+++.|++.||.+ +++|. .| |++|...|..
T Consensus 4 ~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~--------------v~~d~~~g-nv~~~~~~~~ 68 (410)
T TIGR01882 4 ELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQD--------------AHYDEKNG-YVIATIPSNT 68 (410)
T ss_pred HHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCce--------------EEEcCCce-EEEEEecCCC
Confidence 45667777765 3333 4567788889999999853 33444 45 9999865543
Q ss_pred cCCCCCceEEEEeccC---CCceecc
Q 010467 125 YSVGNGFHIIAAHTDS---PCLKLKP 147 (510)
Q Consensus 125 ~~~~~g~~ii~AH~Ds---p~l~VKp 147 (510)
.. ..+.+++.||||. |+=.|||
T Consensus 69 ~~-~~~~i~~~aHmDTv~~~~~~v~p 93 (410)
T TIGR01882 69 DK-DVPTIGFLAHVDTADFNGENVNP 93 (410)
T ss_pred CC-CCCEEEEEEecccCcCCCCCCCC
Confidence 10 0145999999997 4445655
No 26
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=84.65 E-value=0.94 Score=48.46 Aligned_cols=62 Identities=11% Similarity=-0.123 Sum_probs=47.1
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccccc--ccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSM--HRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsM--HS~rE~~~~~~D~ 498 (510)
.|..+...+++.+++.|++.+... .+|||.+.+.+ .|+|++.+..|...+ |++.|.+++ +|+
T Consensus 331 ~d~~lv~~l~~a~~~~G~~~~~~~-----~~ggtDa~~~~--~giPt~~~~gp~~~~~aH~~dE~v~i-~~l 394 (414)
T PRK12891 331 FAPGCIDAVRDAARALGLSHMDIV-----SGAGHDACFAA--RGAPTGMIFVPCVDGLSHNEAEAITP-EWF 394 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcchHHHHHHH--hhCCEEEEEEcCCCCCCCCccccCCH-HHH
Confidence 467788899999988898876532 35777766653 499998777777654 999999998 665
No 27
>PRK06837 acetylornithine deacetylase; Provisional
Probab=84.62 E-value=0.82 Score=49.10 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
|......+++.+++ .|.+.+.... +|+|.+.++....|+|++.+|.....+|++.|-+++ +|+
T Consensus 344 ~~~~~~~~~~a~~~~~g~~~~~~~~-----~g~tDa~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i-~~l 407 (427)
T PRK06837 344 GSEAEAALARAHAAVFGGPLRSFVT-----TAYTDTRFYGLYYGIPALCYGPSGEGIHGFDERVDL-ESV 407 (427)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeeEE-----eeccchHHHhccCCCCEEEECCCCCccCCCCceEEH-HHH
Confidence 44667777777766 7887765442 577888877655899999999988889999999998 654
No 28
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=83.96 E-value=3.8 Score=44.76 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=46.8
Q ss_pred ccCHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcC-CCCcEEEecccccccccHHHhhcccccC
Q 010467 428 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 428 ~td~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~-~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
..|......+++.+++ .|.+...... +|||.+.+.+.. -|+|++.+|.+.-.+|++.|-+.+ +|+
T Consensus 396 ~~d~plv~~l~~a~~~~~g~~~~~~~~-----~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i-~~l 462 (477)
T TIGR01893 396 DPQSNLLDTARKVYSEMFGEDPEVKVI-----HAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSI-SSV 462 (477)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeEEEe-----ecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeH-HHH
Confidence 3466677777777775 4777665432 466656665543 389999999999999999999988 554
No 29
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=82.94 E-value=1.1 Score=46.83 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
|....+.+++.+++ .|.+.+... .||+|.+.++.. .|+|++.+|..-..+|++.|-+++ +|+
T Consensus 294 ~~~~~~~~~~a~~~~~g~~~~~~~-----~~g~~d~~~~~~-~g~p~~~~Gp~~~~~H~~~E~i~i-~~l 356 (370)
T TIGR01246 294 DGKLIDKAREAIEETNGIKPELST-----GGGTSDGRFIAL-MGAEVVEFGPVNATIHKVNECVSI-EDL 356 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec-----CCCCchHHHHHH-cCCCEEEecCCcccCCCCCceeEH-HHH
Confidence 45566667776665 677655432 367888888765 799999999998889999999998 664
No 30
>PRK08652 acetylornithine deacetylase; Provisional
Probab=82.62 E-value=0.88 Score=46.83 Aligned_cols=62 Identities=16% Similarity=-0.020 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc-cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~-lsMHS~rE~~~~~~D~ 498 (510)
|..+.+.+++.+++.|.+..... .+|+|.+..++. .|+|++.+|.-. -.+|++.|-+.+ +|+
T Consensus 268 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~gip~v~~Gpg~~~~~H~~nE~i~i-~~l 330 (347)
T PRK08652 268 DEEIVQLLEKAMKEVGLEPEFTV-----MRSWTDAINFRY-NGTKTVVWGPGELDLCHTKFERIDV-REV 330 (347)
T ss_pred CCHHHHHHHHHHHHhCCCCCcCc-----CCccchhHHHHH-CCCCEEEECCCchhhcCCCCceeeH-HHH
Confidence 67788889999998888765432 246788877764 799999999755 358999999998 665
No 31
>PLN02280 IAA-amino acid hydrolase
Probab=82.30 E-value=7.7 Score=42.76 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhccCC----ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCce
Q 010467 57 SSSIVGDLLDYLNESW----TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFH 132 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~----T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ 132 (510)
..++.+++..++-..| -++.+.+++++.|++.||+. .. . ..+.+++|.. |+.. ...+
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~-~~----~----------~~~~~vva~~-g~~~---~~~I 155 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMY-RY----P----------LAKTGIRAWI-GTGG---PPFV 155 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeE-Ee----c----------CCCCEEEEEE-CCCC---CCEE
Confidence 4456678889998888 56999999999999999972 11 0 0134788874 6431 1348
Q ss_pred EEEEeccCCCc
Q 010467 133 IIAAHTDSPCL 143 (510)
Q Consensus 133 ii~AH~Dsp~l 143 (510)
++-+|+|-.-.
T Consensus 156 ~l~gh~DaVP~ 166 (478)
T PLN02280 156 AVRADMDALPI 166 (478)
T ss_pred EEEEecCCCcc
Confidence 99999998754
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=81.82 E-value=1.6 Score=45.94 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
.|....+.+++.+++ .|.+.+.... +|+|.+.++.. .|||++.+|..--.+|++.|-+.+ +|+
T Consensus 323 ~~~~~v~~l~~a~~~~~g~~~~~~~~-----~g~td~~~~~~-~gip~v~~Gp~~~~~H~~nE~v~i-~~l 386 (400)
T PRK13983 323 PDSEIVKKLKRAIKEVRGIEPKVGGI-----GGGTVAAFLRK-KGYPAVVWSTLDETAHQPNEYAKI-SNL 386 (400)
T ss_pred CCcHHHHHHHHHHHHhcCCCceeeee-----cCcHHHHHHHH-cCCCEEEeCCccccCCCCCceeeH-HHH
Confidence 466677777777766 6777666442 57788888764 799999999988889999999988 554
No 33
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=81.58 E-value=1.2 Score=46.01 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
.|......+++.+++.+.+..... .+|+|.+.+++..+|+|++.+|.-... +|++.|-+++ +|+
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~~~~~-----~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i-~~l 319 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKPRLKK-----KTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQEKISL-AEY 319 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEee-----ccccCccceeccccCCCeEEECCCCcccCCCCcceeEH-HHH
Confidence 466778888888888876655432 247788888776569999999987554 7999999988 654
No 34
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=81.25 E-value=1.5 Score=46.06 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccc-ccccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA-QLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP-~lsMHS~rE~~~~~~D~ 498 (510)
.|......+++.+++ .|.+..... .+|||.+.++.. .|||++.+|+- .--+|++.|-+.+ +|+
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~~-~~~ 369 (375)
T TIGR01910 305 PDSRLVKALEAIIKKVRGIEPEVLV-----STGGTDARFLRK-AGIPSIVYGPGDLETAHQVNEYISI-KNL 369 (375)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEee-----eccchhHHHHHH-cCCcEEEECCCCccccCCCCceeEH-HHH
Confidence 356677888888876 576654332 257888888765 79999999976 4679999999988 654
No 35
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=80.58 E-value=2.9 Score=44.68 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCC
Q 010467 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (510)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp 141 (510)
+..+.+++++.|++.||. .. ++..| |++|...|... +...+++++|+|..
T Consensus 39 e~~~~~~l~~~l~~~G~~-v~--------------~~~~g-Nl~a~~~g~~~--~~~~l~~~~H~DtV 88 (414)
T PRK12891 39 DREARDLFVAWARDAGCT-VR--------------VDAMG-NLFARRAGRDP--DAAPVMTGSHADSQ 88 (414)
T ss_pred HHHHHHHHHHHHHHCCCE-EE--------------ECCCC-CEEEEecCCCC--CCCeEEEEecccCC
Confidence 566889999999999995 21 12335 78887656431 12359999999987
No 36
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=79.60 E-value=3.5 Score=42.87 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=36.7
Q ss_pred ceeeccc-----chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 298 EFIFSGR-----LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 298 e~I~s~r-----LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
+.+.|++ .|+..++.++|.++..+... . ......+++++..||.|+.|+.
T Consensus 87 ~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~--~--~~~~~v~~~~~~~EE~g~~G~~ 141 (361)
T TIGR01883 87 GIFTSLGGTILGADDKAGVAAMLEAMDVLSTE--E--TPHGTIEFIFTVKEELGLIGMR 141 (361)
T ss_pred CeEecCCCeEeeccccHHHHHHHHHHHHHHhc--C--CCCCCEEEEEEcccccCchhHh
Confidence 3455555 69999999999998887542 1 1234678899999999887554
No 37
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=79.15 E-value=3.3 Score=44.84 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCcccCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhc-CCCCcEEEecccccccccHHHhhcc
Q 010467 425 QRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIAQLSMHRYLNFNYF 494 (510)
Q Consensus 425 ~~y~td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as-~~Gi~tiDiGiP~lsMHS~rE~~~~ 494 (510)
.++-.++......++..++.++.-.....| |||.|..++. ...++.+-+|. ..-+||+.|-+.+
T Consensus 330 ~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~-----gGtd~~~is~~g~p~~~i~~Gp-~~n~Hs~~E~v~I 394 (414)
T COG2195 330 WKIKPDSPLVDLAKKAYKELGIKPKVKPIH-----GGTDGGVLSFKGLPTPNISTGP-GENPHSPDEFVSI 394 (414)
T ss_pred cCCCCCchHHHHHHHHHHHhCCCceEEEee-----cccchhhhhccCCCCceEeccc-ccCCCCccceeeh
Confidence 345567788899999999999996655554 7776665554 35555566665 9999999999987
No 38
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=79.02 E-value=2.8 Score=47.33 Aligned_cols=63 Identities=10% Similarity=-0.072 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
.|+.+...+++.|++.|++++... .+|||.+.+++. .|.+++..+.+- -..|++.|-++. +|+
T Consensus 510 ~d~~lv~~~~~a~~~~G~~~~~~~-----sgag~Da~~~a~-~~p~amif~~~g~~g~sHsp~E~v~~-edL 574 (591)
T PRK13799 510 CAPELMKQLEAATDAAGVPLFELA-----SGAGHDAMKIAE-IMDQAMLFTRCGNAGISHNPLESMTA-DDM 574 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----cchHHHHHHHHh-hCCEEEEEEecCCCCCCCCccccCCH-HHH
Confidence 377788899999999998876422 367888888776 466665554432 236999999998 765
No 39
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=78.69 E-value=3.1 Score=47.05 Aligned_cols=63 Identities=10% Similarity=-0.062 Sum_probs=44.8
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
.|+.+...+++.|++.|+++... . .+|||.+.+++. .+.+++-.|.-. =..|++.|-++. +|+
T Consensus 508 ~d~~lv~~~~~aa~~~G~~~~~~--~---sggg~Da~~~a~-~~p~~mifgpg~~~g~sH~p~E~v~~-edL 572 (591)
T PRK13590 508 SAPAWQQRWEAAVAALGLPLFRM--P---SGAGHDAMKLHE-IMPQAMLFVRGENAGISHNPLESSTA-DDM 572 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCcccC--C---cchhHHHHHHHH-HCCEEEEEEeeCCCCCCCCCccCCCH-HHH
Confidence 47778899999999999886532 1 368888888776 455566554321 237999999998 664
No 40
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=78.09 E-value=2.8 Score=45.76 Aligned_cols=68 Identities=7% Similarity=-0.073 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEe
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH 137 (510)
.++.++|+++=..|+.+..+++++++.|++.||+ .. ++..| |+++...|.........+++.+|
T Consensus 7 ~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~-~~--------------~~~~~-n~~~~~~~~~g~~~~~~l~l~~H 70 (477)
T TIGR01893 7 FKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLE-VK--------------QDEVG-NVLIRKPATPGYENHPPIVLQGH 70 (477)
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCe-EE--------------EeCCC-eEEEEEcCCCCCCCCCeEEEEee
Confidence 3455566666444445688899999999999985 21 22335 88887655321111235999999
Q ss_pred ccCC
Q 010467 138 TDSP 141 (510)
Q Consensus 138 ~Dsp 141 (510)
+|..
T Consensus 71 lDtV 74 (477)
T TIGR01893 71 MDMV 74 (477)
T ss_pred cccc
Confidence 9976
No 41
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=77.19 E-value=2.4 Score=45.21 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=46.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc--cccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls--MHS~rE~~~~~~D~ 498 (510)
.|..+.+.+++.+++.|.+.+... .+|+|.+.+.+ .++|++.+..|... +|++.|-+++ +++
T Consensus 332 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~--~~iP~~~~~gp~~~~~~H~~dE~v~i-~~l 395 (413)
T PRK09290 332 FDPGLVAALEEAAERLGLSYRRLP-----SGAGHDAQILA--AVVPTAMIFVPSVGGISHNPAEFTSP-EDC 395 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccchHHHHHh--ccCCEEEEEeccCCCCCCCccccCCH-HHH
Confidence 467788888988888887754322 35778777764 37999887777654 8999999998 654
No 42
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=76.97 E-value=3.4 Score=43.25 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=37.3
Q ss_pred Cceeeccc-chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 297 NEFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 297 ~e~I~s~r-LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
++.|.|++ .||..++.++|.|+..+..... ......+++++..||+|+.|+.
T Consensus 95 ~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~---~~~~~i~~~~~~~EE~g~~G~~ 147 (375)
T TIGR01910 95 DGKLYGRGATDMKGGLVALLYALKAIREAGI---KPNGNIILQSVVDEESGEAGTL 147 (375)
T ss_pred CCEEEecCccccchHHHHHHHHHHHHHHcCC---CCCccEEEEEEcCcccCchhHH
Confidence 45677665 6999999999999887753211 1234578899999999976544
No 43
>PRK05469 peptidase T; Provisional
Probab=76.42 E-value=8.8 Score=40.81 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCCC
Q 010467 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (510)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp~ 142 (510)
+..+.+++++.|++.||.+.. ++..+ +++|...|+.. .....+++-+|+|-..
T Consensus 31 ~~~~a~~l~~~l~~~G~~~~~--------------~~~~~-~v~~~~~g~~~-~~~~~i~l~~H~D~vp 83 (408)
T PRK05469 31 QWDLAKLLVEELKELGLQDVT--------------LDENG-YVMATLPANVD-KDVPTIGFIAHMDTAP 83 (408)
T ss_pred HHHHHHHHHHHHHHcCCCeEE--------------ECCCe-EEEEEecCCCC-CCCCeEEEEEeccCCC
Confidence 567788899999999995221 12234 78888655421 1123599999999864
No 44
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=76.38 E-value=4.7 Score=42.91 Aligned_cols=63 Identities=14% Similarity=0.017 Sum_probs=47.1
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
.|..+...+++.+++.|.+..... .+|||.+.+++. .|++++-.|.... .+|++.|-+++ +|+
T Consensus 324 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~ggtDa~~~~~-~~~~~v~fgPg~~~~aH~~dE~v~~-e~l 387 (401)
T TIGR01879 324 CSEELVAALTELCERLGYNARVMV-----SGAGHDAQILAP-IVPIGMIFIPSINGISHNPAEWSNI-TDC 387 (401)
T ss_pred CCHHHHHHHHHHHHHcCCCccccc-----cchHHHHHHHHh-hCCEEEEEecCCCCCcCCCCccCCH-HHH
Confidence 477888889999998887765321 357888877765 6888888776554 46999999988 654
No 45
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=75.55 E-value=3.3 Score=45.67 Aligned_cols=68 Identities=10% Similarity=-0.030 Sum_probs=41.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEecc
Q 010467 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (510)
Q Consensus 60 ~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~D 139 (510)
+-+++++.=..|..+-.+.+++.+.|++.||+ +.++..| |+++++.+.........+++.+|+|
T Consensus 15 ~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~---------------~~~d~~g-nvi~~~~~~~g~~~~~~v~l~gH~D 78 (485)
T PRK15026 15 IFAKICSIPHPSYHEEQLAEYIVGWAKEKGFH---------------VERDQVG-NILIRKPATAGMENRKPVVLQAHLD 78 (485)
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCE---------------EEEEecC-eEEEEEcCCCCCCCCCEEEEEeeec
Confidence 34444444444555777888888999999984 2233445 7887764321111123489999999
Q ss_pred CCCc
Q 010467 140 SPCL 143 (510)
Q Consensus 140 sp~l 143 (510)
-++-
T Consensus 79 tV~~ 82 (485)
T PRK15026 79 MVPQ 82 (485)
T ss_pred ccCC
Confidence 7643
No 46
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=75.07 E-value=2.9 Score=44.05 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 432 VTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 432 ~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
.+.+.+++.+++ .|++..... .+|+|.+.++. +.|+|++.+|.-.. -+|++.|-+++ +++
T Consensus 315 ~l~~~~~~a~~~~~g~~~~~~~-----~~g~tD~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~~-~~l 376 (394)
T PRK08651 315 ELVKALREAIREVLGVEPKKTI-----SLGGTDARFFG-AKGIPTVVYGPGELELAHAPDEYVEV-KDV 376 (394)
T ss_pred HHHHHHHHHHHHHhCCCCceee-----ecCcccHHHHh-hCCCcEEEECCCChHhcCCCCceeEH-HHH
Confidence 345555555555 455433322 24778887776 47999999888653 69999999888 554
No 47
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=74.23 E-value=3.4 Score=44.06 Aligned_cols=62 Identities=10% Similarity=-0.030 Sum_probs=45.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc--cccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls--MHS~rE~~~~~~D~ 498 (510)
.|+.+...+.+.+++.|.+.+... .+|||.+.++.. .| +++.+..|... +|++.|-+++ +|+
T Consensus 333 ~~~~l~~~l~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~g-p~~~~~gp~~~~~aHs~dE~v~i-~~l 396 (414)
T PRK12890 333 CDPALVDAVEAAAARLGYPSRRMP-----SGAGHDAAAIAR-IG-PSAMIFVPCRGGISHNPEEAMDP-EDL 396 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcccHHHHHHHh-hC-CEEEEEecCCCCCCCCcCccCCH-HHH
Confidence 467888889999988888876432 357888877765 56 55555555433 8999999998 665
No 48
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=74.04 E-value=8.7 Score=44.37 Aligned_cols=154 Identities=18% Similarity=0.095 Sum_probs=88.9
Q ss_pred CCccccCCCCceeecccchhhhhHHHHHHHHHH---cCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHH
Q 010467 288 QPSCLGGANNEFIFSGRLDNLASSYCGLRALID---SCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRR 364 (510)
Q Consensus 288 ~~~~~~Gl~~e~I~s~rLDNr~~~~a~l~al~~---~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~r 364 (510)
....++|.+++=+.-++.|.=.|+..+++..+. ..+... .+..+.+++.+|.||-|+.|++=- ++
T Consensus 352 D~~ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gw---rP~RtI~F~sWdAeEfGliGStE~--------~E- 419 (702)
T KOG2195|consen 352 DRYVIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGW---RPRRTILFASWDAEEFGLLGSTEW--------AE- 419 (702)
T ss_pred CeEEEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCC---CccceEEEEEccchhccccccHHH--------HH-
Confidence 344566777665655699999998766543333 222211 245578999999999999877621 11
Q ss_pred HHHhccCCCCChhhHhhhccCcEEEEEecCCCCCCCCCcccccCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHC
Q 010467 365 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLH 444 (510)
Q Consensus 365 i~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~G~vIk~~~~~~y~td~~~~a~l~~la~~~ 444 (510)
++...+..-.+.-.|+.-++-|| .+. +-.|++.+..+++++++..
T Consensus 420 -------------~~~~~L~~~av~yin~d~~~~~~--------------~~l--------~~~~~PlL~~li~~~~k~~ 464 (702)
T KOG2195|consen 420 -------------EYLKNLKSRAVVYINVDNAVLGD--------------YTL--------HVKTTPLLTDLIEEAAKSV 464 (702)
T ss_pred -------------HHHHHhhheeEEEEeccccccCC--------------cee--------EEecCccHHHHHHHHHhcc
Confidence 22222333333334443444333 122 2235788888999999886
Q ss_pred CCCeeEEE---eecCCCCCCC-hhHHHhcCCCCcEEEecc--cccccccHHHh
Q 010467 445 NLPTQEFV---VRNDMGCGST-IGPILASGVGIRTVDCGI--AQLSMHRYLNF 491 (510)
Q Consensus 445 ~Ip~Q~~~---~r~D~~gGsT-ig~i~as~~Gi~tiDiGi--P~lsMHS~rE~ 491 (510)
.=|.-... ... .||+| ..+++. ..|||++++-- +.=..||..++
T Consensus 465 ~~p~~~~~~~~v~~--~g~~Sd~~~F~~-~~GIpsv~~~f~~~yP~yhs~~dt 514 (702)
T KOG2195|consen 465 LSPDKGDQSNRVLS--LGGGSDYASFLQ-FAGIPSVDFAFNRTYPFYHSTYDT 514 (702)
T ss_pred CCCCccccceeEec--cCCCCcchhhcc-ccCcceeeeeecCCcceeecccCc
Confidence 55543322 222 34544 566655 48999988643 33345777666
No 49
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=74.00 E-value=3.1 Score=43.29 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
|....+.+++..++.+.+... .. .+|+|.+.+++...|+|++-+|+.... +|++.|-+.+ +|+
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~--~~---~~g~tD~~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i-~~l 334 (348)
T PRK04443 271 RTPLARAFRVAIREAGGTPRL--KR---KTGTSDMNVVAPAWGCPMVAYGPGDSDLDHTPDEHLPL-AEY 334 (348)
T ss_pred CCHHHHHHHHHHHHhcCCcce--ec---cccCCcHHHHhhhcCCCEEEECCCCccccCCCcccccH-HHH
Confidence 455677778877776543211 11 357777777665579999999987554 6999999998 664
No 50
>PRK08596 acetylornithine deacetylase; Validated
Probab=73.83 E-value=3.9 Score=43.83 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=34.5
Q ss_pred eeecc-cchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 299 ~I~s~-rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
.|.|+ ..|++.++.++|.|+..+..... ......+++++..||.|+.|+
T Consensus 110 ~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g~~G~ 159 (421)
T PRK08596 110 WLYGRGAADMKGGLAGALFAIQLLHEAGI---ELPGDLIFQSVIGEEVGEAGT 159 (421)
T ss_pred EEEeccccccchHHHHHHHHHHHHHHcCC---CCCCcEEEEEEeccccCCcCH
Confidence 34444 45999999999999888754211 124457888999999998653
No 51
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=73.66 E-value=9.9 Score=40.53 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCCC
Q 010467 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (510)
Q Consensus 71 s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp~ 142 (510)
++.+..+++++.+.|++.||+- . . ...+ |++|...|+.. ....+++.+|+|...
T Consensus 34 ~~~e~~~~~~l~~~l~~~G~~~-~---~-----------~~~~-nlia~~~g~~~--~~~~l~~~~H~DtVp 87 (414)
T PRK12890 34 SDEERAARALLAAWMRAAGLEV-R---R-----------DAAG-NLFGRLPGRDP--DLPPLMTGSHLDTVP 87 (414)
T ss_pred CHHHHHHHHHHHHHHHHCCCEE-E---E-----------cCCC-cEEEEeCCCCC--CCCEEEEeCcccCCC
Confidence 5567889999999999999952 1 0 1123 89887655321 123599999999884
No 52
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=73.62 E-value=14 Score=40.89 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=46.6
Q ss_pred cccCHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCC-hhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 427 YATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 427 y~td~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsT-ig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
|..|..+...+.++.++ .|-+-+.... .||+ .|-+....-|||+|.+|+-+..||||.|-+++ +++
T Consensus 401 ~~~ds~lv~~l~~~y~e~~G~~~~~~~i-----haglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I-~s~ 468 (485)
T PRK15026 401 PDANSPVMHLVRETYQRLFNKTPNIQII-----HAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHI-ESV 468 (485)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCeEEEE-----EEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEh-HHH
Confidence 34466667777776666 3555554443 3555 45444444799999999999999999999998 665
No 53
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=73.21 E-value=10 Score=39.33 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|+++=..++.+..+.+++.++|++.||+. . .+..| |++|.. |+. ...+++.+
T Consensus 8 ~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~-~--------------~~~~~-n~i~~~-~~~----~~~l~~~~ 66 (348)
T PRK04443 8 ARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREA-W--------------VDEAG-NARGPA-GDG----PPLVLLLG 66 (348)
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEE-E--------------EcCCC-cEEEEc-CCC----CCEEEEEe
Confidence 455677777777778888899999999999999952 1 11224 677764 432 23599999
Q ss_pred eccCCC
Q 010467 137 HTDSPC 142 (510)
Q Consensus 137 H~Dsp~ 142 (510)
|+|-..
T Consensus 67 H~DtVp 72 (348)
T PRK04443 67 HIDTVP 72 (348)
T ss_pred eccccC
Confidence 999874
No 54
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=72.95 E-value=3.6 Score=42.73 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 431 ~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
......+.+.+++.|.+.+... .+|+|.+.+++. .|.+++-.|.-... +|++.|-+.+ +|+
T Consensus 267 ~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~~~~~v~fGpg~~~~aH~~nE~i~i-~~l 328 (346)
T PRK00466 267 NPVVKALMRALLKQNIKPRLVR-----KAGTSDMNILQK-ITTSIATYGPGNSMLEHTNQEKITL-DEI 328 (346)
T ss_pred CHHHHHHHHHHHHhCCCceEEe-----cCCcCcHHHHHH-hCCCEEEECCCCcccccCCCceeeH-HHH
Confidence 4555666666666676654432 357787777765 67899999976555 7999999988 664
No 55
>PRK07473 carboxypeptidase; Provisional
Probab=72.72 E-value=4.2 Score=43.02 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=31.8
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
...|++.++.++|.|+..+...... ......++++..||+|+.|.
T Consensus 109 G~~D~Kgglaa~l~A~~~l~~~~~~---~~~~v~~~~~~dEE~g~~g~ 153 (376)
T PRK07473 109 GILDMKGGNYLALEAIRQLARAGIT---TPLPITVLFTPDEEVGTPST 153 (376)
T ss_pred chhhchHHHHHHHHHHHHHHHcCCC---CCCCEEEEEeCCcccCCccH
Confidence 3489999999999998877432101 12246778899999998653
No 56
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=72.62 E-value=4 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|+++=..|..+..+.+++.+.|++.||. .+ .+...+ .+.+++|.. |+. ...+++.+
T Consensus 4 ~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~-~~---~~~~~~--------~~~~l~a~~-g~~----~~~il~~~ 66 (377)
T PRK08588 4 KIQILADIVKINSVNDNEIEVANYLQDLFAKHGIE-SK---IVKVND--------GRANLVAEI-GSG----SPVLALSG 66 (377)
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCc-eE---EEecCC--------CCceEEEEe-CCC----CceEEEEe
Confidence 34566777777777788999999999999999996 22 111111 123777764 532 12488999
Q ss_pred eccCC
Q 010467 137 HTDSP 141 (510)
Q Consensus 137 H~Dsp 141 (510)
|+|-.
T Consensus 67 H~DtV 71 (377)
T PRK08588 67 HMDVV 71 (377)
T ss_pred eeccc
Confidence 99976
No 57
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=72.55 E-value=3.5 Score=43.64 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc---cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ---LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~---lsMHS~rE~~~~~~D~ 498 (510)
+......+++.+++.+.+.+... .+|+|.+.++.. .|||++-.|.-- ...|++.|-+++ +|+
T Consensus 319 ~~~lv~~l~~a~~~~~~~~~~~~-----~~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE~i~i-~~l 383 (400)
T TIGR01880 319 SNPWWVAFKDAVKEMGCTFKPEI-----LPGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNEFLNE-AVF 383 (400)
T ss_pred CCHHHHHHHHHHHHcCCeeccee-----ecCcchHHHHHh-CCCCeEEECCccCCcccccCCCCceEH-HHH
Confidence 45666788889988776554422 357899988865 899999877632 248999999888 554
No 58
>PRK06915 acetylornithine deacetylase; Validated
Probab=72.47 E-value=4.7 Score=42.97 Aligned_cols=63 Identities=11% Similarity=-0.060 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
|..+...+++.+++ .|.+..... .+|||.+.++....|+|++.+|+... ..|++.|-+++ +|+
T Consensus 339 d~~lv~~l~~a~~~~~G~~~~~~~-----~~g~tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~-~~l 403 (422)
T PRK06915 339 NHPLMTTLEHNFVEIEGNKPIIEA-----SPWGTDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEV-DKM 403 (422)
T ss_pred CCHHHHHHHHHHHHHhCCCCeece-----eeeeccHHHHhccCCCCEEEECCCCccccCCCCceeEH-HHH
Confidence 45556666666665 354433211 34678787777644999999998644 48999999888 654
No 59
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=72.11 E-value=11 Score=39.23 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=46.3
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEec
Q 010467 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (510)
Q Consensus 59 ~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~ 138 (510)
++..+|++.=..|.-+..+++++.+.|++.||. ... | .+ .. .+++|...|+.. ...+++.+|+
T Consensus 3 ~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~-~~~---~--~~-------~~-~~vva~~~~~~~---~~~i~l~gH~ 65 (363)
T TIGR01891 3 DIRRHLHEHPELSFEEFKTSSLIAEALESLGIE-VRR---G--VG-------GA-TGVVATIGGGKP---GPVVALRADM 65 (363)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCc-eEe---c--CC-------CC-cEEEEEEeCCCC---CCEEEEEecc
Confidence 456677777777777899999999999999996 221 1 11 12 378887533321 2358999999
Q ss_pred cCCC
Q 010467 139 DSPC 142 (510)
Q Consensus 139 Dsp~ 142 (510)
|-..
T Consensus 66 DtVp 69 (363)
T TIGR01891 66 DALP 69 (363)
T ss_pred CCCC
Confidence 9864
No 60
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=71.80 E-value=12 Score=39.76 Aligned_cols=62 Identities=10% Similarity=-0.108 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
.|..+...+++.+++.|.+..... .+|||.+.+++.. +|++-+..|. -.+|++.|-+++ +++
T Consensus 332 ~d~~lv~~~~~a~~~~g~~~~~~~-----~~g~tDa~~~~~~--ip~~~~~gp~~~~~~H~~~E~v~i-~~l 395 (412)
T PRK12892 332 CDAALVDALRAAAEAAGGPYLEMP-----SGAGHDAQNMARI--APSAMLFVPSKGGISHNPAEDTSP-ADL 395 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----cchHHHHHHHHhH--CCEEEEEeccCCCCCCCCCCCCCH-HHH
Confidence 467788889999988887754322 3578887777653 8876555553 237999999888 554
No 61
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=71.72 E-value=4.7 Score=41.75 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=33.9
Q ss_pred eeecc-cchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 299 ~I~s~-rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
.|.|+ ..|++.++.++|.|+..+.+. .+ .....++|...||+|+.|+.
T Consensus 90 ~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~---~~~v~~~~~~~EE~g~~G~~ 138 (364)
T TIGR01892 90 RLYGRGTCDMKGFLACALAAAPDLAAE--QL---KKPLHLALTADEEVGCTGAP 138 (364)
T ss_pred EEEecCccccchHHHHHHHHHHHHHhc--Cc---CCCEEEEEEeccccCCcCHH
Confidence 34443 379999999999988776532 12 33567889999999986544
No 62
>PRK13381 peptidase T; Provisional
Probab=71.18 E-value=5.5 Score=42.29 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=31.9
Q ss_pred chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 305 LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
-|+..++.++|.|+..+... . ......+++|...||+|+.|+.
T Consensus 137 ~DmKgg~aa~l~a~~~l~~~--~--~~~g~i~~~~~~dEE~g~~G~~ 179 (404)
T PRK13381 137 ADNKAAIAVVMTLLENLTEN--E--VEHGDIVVAFVPDEEIGLRGAK 179 (404)
T ss_pred cccHHHHHHHHHHHHHHHhc--C--CCCCCEEEEEEcccccccccHH
Confidence 69999999999998877532 1 1234578899999999876444
No 63
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=70.70 E-value=3.8 Score=43.10 Aligned_cols=74 Identities=16% Similarity=0.032 Sum_probs=40.8
Q ss_pred HHHHHHHHhhccCC---ChHHHHHHHHHHHHHCCCccccccccccccCCC-eEEEeecCcEEEEEEeCCccCCCCCceEE
Q 010467 59 SIVGDLLDYLNESW---TPFHATAEAKRLLIDAGFELLNENDEWELKPGG-GYFFTRNMSCLVAFAVGQKYSVGNGFHII 134 (510)
Q Consensus 59 ~~a~~~~~Fl~~s~---T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~-ky~~~r~g~sliAf~~G~~~~~~~g~~ii 134 (510)
++.++|+++=..|| .+..+.++++++|++.||+ ... ....++. ....+. ..++++.. |.. +..+++
T Consensus 10 ~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~-~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~----~~~ill 79 (394)
T PRK08651 10 EFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFS-TEI---IEVPNEYVKKHDGP-RPNLIARR-GSG----NPHLHF 79 (394)
T ss_pred HHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCe-EEE---EecCccccccccCC-cceEEEEe-CCC----CceEEE
Confidence 34455555555552 2357899999999999995 221 1111110 000011 12577653 432 235899
Q ss_pred EEeccCCC
Q 010467 135 AAHTDSPC 142 (510)
Q Consensus 135 ~AH~Dsp~ 142 (510)
.+|+|...
T Consensus 80 ~~HlDtvp 87 (394)
T PRK08651 80 NGHYDVVP 87 (394)
T ss_pred Eeeeeeec
Confidence 99999763
No 64
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=70.67 E-value=4.4 Score=42.24 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccccccHHHhhcccccC
Q 010467 431 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 431 ~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS~rE~~~~~~D~ 498 (510)
....+.+++.+++ .|.+.+... .+|+|.+.++.. .|+|++.+|.--...|++.|-+++ +|+
T Consensus 298 ~~~~~~l~~a~~~~~g~~~~~~~-----~~g~tda~~~~~-~g~p~v~~Gp~~~~~H~~~E~i~~-~~l 359 (375)
T PRK13009 298 GKLVDAVVAAIEAVTGITPELST-----SGGTSDARFIAD-YGAQVVEFGPVNATIHKVNECVSV-ADL 359 (375)
T ss_pred cHHHHHHHHHHHHHhCCCceeec-----cCCCccHHHHHH-cCCCeEEeccCcccCCCCCCcEEH-HHH
Confidence 4556666666665 677765543 367788888776 799999999876679999999988 664
No 65
>PRK07205 hypothetical protein; Provisional
Probab=70.34 E-value=5.1 Score=43.22 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=34.1
Q ss_pred eeecc-cchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCC
Q 010467 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (510)
Q Consensus 299 ~I~s~-rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~g 349 (510)
.|.|+ ..|+..++.++|.|+..+.... . ..+....+++...||+|+.|
T Consensus 108 ~lyGRGa~DmKgglaa~l~Al~~l~~~~--~-~~~~~i~l~~~~dEE~g~~g 156 (444)
T PRK07205 108 CLFGRGTQDDKGPSMAALYAVKALLDAG--V-QFNKRIRFIFGTDEETLWRC 156 (444)
T ss_pred EEEECCcccCcHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEECCcccCccc
Confidence 34444 4899999999999988775321 1 12345788889999999864
No 66
>PRK06837 acetylornithine deacetylase; Provisional
Probab=69.40 E-value=11 Score=40.36 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccc--ccccccc--CC-CeE--EEeecCcEEEEEEeCCccCCCCC
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNE--NDEWELK--PG-GGY--FFTRNMSCLVAFAVGQKYSVGNG 130 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e--~~~w~l~--pg-~ky--~~~r~g~sliAf~~G~~~~~~~g 130 (510)
.++.++|+++=..|+.+..+.+++++.|++.||. ... ...+.+. ++ +++ .... ..+|+|...|+.+ ...
T Consensus 23 ~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nl~a~~~g~~~--~~~ 98 (427)
T PRK06837 23 VAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYE-VDRWSIDPDDLKSHPGAGPVEIDYSG-APNVVGTYRPAGK--TGR 98 (427)
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCc-eEEecCCHHHhhhcccccccccccCC-CceEEEEecCCCC--CCC
Confidence 3455667776677788899999999999999996 221 1111111 11 111 1122 2488887545321 122
Q ss_pred ceEEEEeccCC
Q 010467 131 FHIIAAHTDSP 141 (510)
Q Consensus 131 ~~ii~AH~Dsp 141 (510)
.+++.+|+|..
T Consensus 99 ~il~~gH~DvV 109 (427)
T PRK06837 99 SLILQGHIDVV 109 (427)
T ss_pred eEEEEeecccC
Confidence 48999999976
No 67
>PRK13004 peptidase; Reviewed
Probab=68.50 E-value=16 Score=38.80 Aligned_cols=63 Identities=17% Similarity=0.003 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHC-CCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~-~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
+......+++.+++. |.+..... ..++|.|.......|+|++.+|+-... +|++.|-+.+ +|+
T Consensus 317 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i-~~l 381 (399)
T PRK13004 317 DHEFVKAAVEAYKGLFGKAPEVDK-----WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWK-EQL 381 (399)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecc-----cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEH-HHH
Confidence 556667777777765 76543221 134555444444589999999975544 9999999988 654
No 68
>PRK08737 acetylornithine deacetylase; Provisional
Probab=68.48 E-value=4.1 Score=42.94 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc-cccccHHHhhcccccC
Q 010467 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 431 ~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~-lsMHS~rE~~~~~~D~ 498 (510)
....+.++.++++.++|.-.. .+|+|.+.++.. .||||+..|.-- -.+|++.|-+++ +++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~------~~~~tDa~~~~~-~Gip~v~~GpG~~~~aHt~dE~i~i-~~l 350 (364)
T PRK08737 290 EERRLAARDVADALDLPIGNA------VDFWTEASLFSA-AGYTALVYGPGDIAQAHTADEFVTL-DQL 350 (364)
T ss_pred hHHHHHHHHHHhhhcCCCCce------eccccCHHHHHH-cCCCEEEECCCChhhccCCCcceeH-HHH
Confidence 344455677777777775321 246888888764 799999999984 468999999988 543
No 69
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=68.35 E-value=17 Score=38.59 Aligned_cols=63 Identities=14% Similarity=-0.043 Sum_probs=43.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
.|+.+.+.+++.+++.+.+.+... .+|+|.+.+++. .+.+++..|.... .+|++.|.+++ +|+
T Consensus 331 ~d~~l~~~l~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~~p~~v~~gp~~~~~~Hs~dE~v~i-~~l 394 (412)
T PRK12893 331 FDPALVALVEAAAEALGLSHMRMV-----SGAGHDAMFLAR-VAPAAMIFVPCRGGISHNEAEDTEP-ADL 394 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccHHHHHHHHh-hCCEEEEEeecCCCCCCCccccCCH-HHH
Confidence 467788888888888887765322 357788777765 3433565554322 36999999998 664
No 70
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=67.61 E-value=6.3 Score=41.74 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=33.1
Q ss_pred eecccc-hhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCC-CC
Q 010467 300 IFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD-SY 350 (510)
Q Consensus 300 I~s~rL-DNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~-ga 350 (510)
|.|.+- |+..++.++|.|+..+... .. ......++++...||+|+. |+
T Consensus 105 iyGrG~~D~K~~~aa~l~a~~~l~~~--~~-~~~~~v~l~~~~dEE~g~~~G~ 154 (400)
T TIGR01880 105 IYARGAQDMKCVGVQYLEAVRNLKAS--GF-KFKRTIHISFVPDEEIGGHDGM 154 (400)
T ss_pred EEEcccccccHHHHHHHHHHHHHHHc--CC-CCCceEEEEEeCCcccCcHhHH
Confidence 444444 9999999999888877532 11 1234578889999999863 54
No 71
>PRK08652 acetylornithine deacetylase; Provisional
Probab=67.20 E-value=6.6 Score=40.35 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCc
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFE 91 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~ 91 (510)
..++.++|+++=.-|+.++.+++++.+.|++.||.
T Consensus 4 ~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~ 38 (347)
T PRK08652 4 AKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYD 38 (347)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCE
Confidence 45577788877778888999999999999999995
No 72
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=67.15 E-value=14 Score=38.66 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccCCC-----hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCce
Q 010467 58 SSIVGDLLDYLNESWT-----PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFH 132 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T-----~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ 132 (510)
.++.++|+.+=..||+ +.-+.+++.+.|++.||..... +...+++.......+++|...|... ...+
T Consensus 8 ~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~-----~~~~~~~~~~~~~~nl~~~~~g~~~---~~~l 79 (400)
T PRK13983 8 IELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVER-----YDAPDPRVIEGVRPNIVAKIPGGDG---KRTL 79 (400)
T ss_pred HHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEE-----EecCCcccccCCCccEEEEecCCCC---CCeE
Confidence 3445555554444543 5778899999999999962110 1111111111112378887545321 2259
Q ss_pred EEEEeccCCC
Q 010467 133 IIAAHTDSPC 142 (510)
Q Consensus 133 ii~AH~Dsp~ 142 (510)
++.+|+|...
T Consensus 80 ll~~H~Dtvp 89 (400)
T PRK13983 80 WIISHMDVVP 89 (400)
T ss_pred EEEeeccccC
Confidence 9999999863
No 73
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=66.47 E-value=20 Score=37.31 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|++.-..||.++.+.+++.+.|++.||+. . .+ +. ...+ ++++.. |+. ...+++.+
T Consensus 4 ~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~-~---~~--~~------~~~~-n~~~~~-g~~----~~~i~l~~ 65 (375)
T PRK13009 4 VLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTC-E---RM--DF------GDVK-NLWARR-GTE----GPHLCFAG 65 (375)
T ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeE-E---Ee--cc------CCCc-EEEEEe-cCC----CCEEEEEe
Confidence 345677888888888889999999999999999962 1 11 11 1123 787754 542 23599999
Q ss_pred eccCC
Q 010467 137 HTDSP 141 (510)
Q Consensus 137 H~Dsp 141 (510)
|+|..
T Consensus 66 H~D~V 70 (375)
T PRK13009 66 HTDVV 70 (375)
T ss_pred ecccC
Confidence 99986
No 74
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=66.38 E-value=6.1 Score=40.99 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCc
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFE 91 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~ 91 (510)
.++.++|+.+=..++-+-.+.+++.+.|++.||.
T Consensus 13 ~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~ 46 (346)
T PRK00466 13 KELLLDLLSIYTPSGNETNATKFFEKISNELNLK 46 (346)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCe
Confidence 3455566666444445778889999999999984
No 75
>PRK06915 acetylornithine deacetylase; Validated
Probab=65.75 E-value=5.1 Score=42.75 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccC----CCeEEE-----eecCcEEEEEEeCCccCCC
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKP----GGGYFF-----TRNMSCLVAFAVGQKYSVG 128 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~p----g~ky~~-----~r~g~sliAf~~G~~~~~~ 128 (510)
.++.++|++.=..|+-+..+.++++++|++.||.. . .|...+ ...+|+ ...+.||+|...|.+.
T Consensus 20 ~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~--- 92 (422)
T PRK06915 20 VKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDL-D---IWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGG--- 92 (422)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCee-E---EeecchhhhhcccccCCcccccCCCceEEEEEcCCCC---
Confidence 34555555554455567899999999999999963 1 111110 011111 0123489887655431
Q ss_pred CCceEEEEeccCC
Q 010467 129 NGFHIIAAHTDSP 141 (510)
Q Consensus 129 ~g~~ii~AH~Dsp 141 (510)
...+++.+|+|-.
T Consensus 93 ~~~l~l~~H~Dtv 105 (422)
T PRK06915 93 GKSMILNGHIDVV 105 (422)
T ss_pred CCeEEEEeecccc
Confidence 2248999999987
No 76
>PRK13004 peptidase; Reviewed
Probab=65.40 E-value=3.1 Score=44.13 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|+++=..|..++.+.+++.+.|++.||... +++..+ +++|.. ++. ...+++.+
T Consensus 17 ~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~--------------~~~~~~-n~~a~~-~~~----~~~i~~~~ 76 (399)
T PRK13004 17 MTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKV--------------EIDPMG-NVLGYI-GHG----KKLIAFDA 76 (399)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEE--------------EEcCCC-eEEEEE-CCC----CcEEEEEe
Confidence 4445556666666667789999999999999999521 112223 787765 332 13489999
Q ss_pred eccCCC
Q 010467 137 HTDSPC 142 (510)
Q Consensus 137 H~Dsp~ 142 (510)
|+|-..
T Consensus 77 H~DtVp 82 (399)
T PRK13004 77 HIDTVG 82 (399)
T ss_pred ccCccC
Confidence 999864
No 77
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=65.08 E-value=8.7 Score=41.01 Aligned_cols=43 Identities=21% Similarity=0.082 Sum_probs=30.9
Q ss_pred chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 305 LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
.|+..++.++|.|+..+... .. ......+++|+..||+|+.|+
T Consensus 135 ~D~kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~ 177 (410)
T PRK06133 135 ADDKGGVAVILHALKILQQL--GF-KDYGTLTVLFNPDEETGSPGS 177 (410)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCCCEEEEEECCcccCCccH
Confidence 79999999999888776432 11 123457888999999987543
No 78
>PRK09133 hypothetical protein; Provisional
Probab=64.73 E-value=7.6 Score=42.25 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.5
Q ss_pred eeecc-cchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccc-cCCCCC
Q 010467 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEE-VGSDSY 350 (510)
Q Consensus 299 ~I~s~-rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EE-VGS~ga 350 (510)
+|.|+ ..|+..++.++|.|+..+..... ......+++++..|| .|+.|+
T Consensus 133 ~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~g~~G~ 183 (472)
T PRK09133 133 YFYGRGTSDDKADAAIWVATLIRLKREGF---KPKRDIILALTGDEEGTPMNGV 183 (472)
T ss_pred EEEecCcccchHHHHHHHHHHHHHHhcCC---CCCCCEEEEEECccccCccchH
Confidence 45555 35999999999999877743211 124457889999999 566543
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=64.09 E-value=10 Score=40.61 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=54.1
Q ss_pred eecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCccCCCcchHHHHHHHHHhccCCCCChhhH
Q 010467 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 379 (510)
Q Consensus 300 I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~GA~s~~l~~~l~ri~~~~~~~~~~~~~~ 379 (510)
+.-++.||-.|+.++|+....+...+ ++....+++|..||.|..|++-.......+..+.
T Consensus 222 ~~~GA~DNasGva~llEiAr~l~~~~-----p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~--------------- 281 (435)
T COG2234 222 TGPGADDNASGVAALLELARVLKGNP-----PKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKK--------------- 281 (435)
T ss_pred CCCCcccccHHHHHHHHHHHHHhcCC-----CCceEEEEEecchhhcccccHHHHhcCCcchhhh---------------
Confidence 44588999999999999988886531 4556788999999999999887765544321111
Q ss_pred hhhccCcEEEEEecCCCCCC
Q 010467 380 ECTIRQSFLVSADMAHGVHP 399 (510)
Q Consensus 380 ~~~l~~S~~IS~DvahA~hP 399 (510)
-..+|-.|+-...+|
T Consensus 282 -----~~~viN~Dm~g~~~~ 296 (435)
T COG2234 282 -----IALVINLDMLGSPNP 296 (435)
T ss_pred -----hheEEecccccCCCC
Confidence 124788888877654
No 80
>PRK07338 hypothetical protein; Provisional
Probab=63.98 E-value=14 Score=39.08 Aligned_cols=52 Identities=21% Similarity=0.113 Sum_probs=36.3
Q ss_pred CCceeeccc-chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 296 NNEFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 296 ~~e~I~s~r-LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
.++.|.|++ .|++.++.++|.|+..+... .. .......++|...||+|+.|+
T Consensus 118 ~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~ 170 (402)
T PRK07338 118 DDGTLNGPGVADMKGGIVVMLAALLAFERS--PL-ADKLGYDVLINPDEEIGSPAS 170 (402)
T ss_pred eCCEEECCcHHhhhHHHHHHHHHHHHHHhc--CC-CCCCCEEEEEECCcccCChhh
Confidence 355677754 89999999999998877432 11 112346778889999998644
No 81
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=63.91 E-value=6.4 Score=41.19 Aligned_cols=63 Identities=14% Similarity=-0.003 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhc-CCCCcEEEeccc-ccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIA-QLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as-~~Gi~tiDiGiP-~lsMHS~rE~~~~~~D~ 498 (510)
|..+.+.+++.+++ .|.++.... .+|+|.+..+.. ..|+|++.+|.- .-.+|++.|-+++ +|+
T Consensus 296 ~~~l~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~-~~l 361 (377)
T PRK08588 296 DSKLVQLAKDVAKSYVGQDIPLSA-----IPGATDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEK-DMY 361 (377)
T ss_pred CCHHHHHHHHHHHHhhCCCCceec-----CCCcccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEH-HHH
Confidence 45677888888877 676654322 357777665554 368999999976 4568999999988 654
No 82
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=63.37 E-value=7.7 Score=40.02 Aligned_cols=42 Identities=17% Similarity=0.010 Sum_probs=32.5
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
...|+..++.+++.|+..+... ....+++++..||.|+.|..
T Consensus 79 G~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~~dEE~g~~G~~ 120 (336)
T TIGR01902 79 GAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGLVDEESSSKGAR 120 (336)
T ss_pred cccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEEeCcccCCccHH
Confidence 4689999999999998877532 23567788999999876554
No 83
>PRK07522 acetylornithine deacetylase; Provisional
Probab=62.47 E-value=9.3 Score=40.00 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCChhHHHhcCCCCcEEEecc-cccccccHHHhhcccccC
Q 010467 459 CGSTIGPILASGVGIRTVDCGI-AQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGi-P~lsMHS~rE~~~~~~D~ 498 (510)
.|+|.+.++. ..|+|++-+|. +.-.+|++.|-+++ +++
T Consensus 331 ~~~td~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~i-~~l 369 (385)
T PRK07522 331 AYGTEAGLFQ-RAGIPTVVCGPGSIEQAHKPDEFVEL-AQL 369 (385)
T ss_pred eeecchHHhc-cCCCCEEEECCCChhhCCCCCccccH-HHH
Confidence 3667777776 58999999997 34479999999888 554
No 84
>PRK07906 hypothetical protein; Provisional
Probab=61.91 E-value=32 Score=36.71 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHHHHHCC--CCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc--------cccccHHHhhcccccC
Q 010467 429 TSGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--------LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 429 td~~~~a~l~~la~~~~--Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~--------lsMHS~rE~~~~~~D~ 498 (510)
.|......+++.+++.. .. ..... .+|+|.+.+++. .|+|++-.|.-- -.+|++.|-+.+ +|+
T Consensus 340 ~~~~~v~~l~~a~~~~~~~~~-~~~~~----~~ggtDa~~~~~-~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~-~~l 412 (426)
T PRK07906 340 FDGPLVDAMNAALLAEDPGAR-VVPYM----LSGGTDAKAFSR-LGIRCYGFAPLRLPPDLDFAALFHGVDERVPV-DAL 412 (426)
T ss_pred CCcHHHHHHHHHHHHHCCCCe-Eeeee----ecccCcHHHHHh-cCCceEEEeccccCccccccccCcCCCCceeH-HHH
Confidence 35677778888888753 21 11111 257788888874 899999887532 469999999988 654
No 85
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=61.87 E-value=26 Score=37.09 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~A 136 (510)
+.++.++|+++=.-+..++.+.+++.+.|++.||.... ++..+ +++|.. |.. ...+++.+
T Consensus 15 ~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~--------------~~~~~-~v~~~~-g~~----~~~l~l~~ 74 (395)
T TIGR03526 15 MIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVE--------------IDPMG-NVLGYI-GHG----PKLIAMDA 74 (395)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEE--------------EcCCC-cEEEEe-CCC----CCEEEEEe
Confidence 44455566665566677899999999999999996211 11123 677764 532 22489999
Q ss_pred eccCCC
Q 010467 137 HTDSPC 142 (510)
Q Consensus 137 H~Dsp~ 142 (510)
|+|-..
T Consensus 75 H~DtVp 80 (395)
T TIGR03526 75 HIDTVG 80 (395)
T ss_pred eccccC
Confidence 999874
No 86
>PRK09104 hypothetical protein; Validated
Probab=61.78 E-value=8.7 Score=41.70 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=31.4
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~g 349 (510)
+..|+..++.+++.|+..+.+....+ .....+++...||+|+.|
T Consensus 125 G~~D~Kg~laa~l~a~~~l~~~~~~~---~~~i~~~~~~dEE~g~~g 168 (464)
T PRK09104 125 GASDDKGQLMTFVEACRAWKAVTGSL---PVRVTILFEGEEESGSPS 168 (464)
T ss_pred cccCCcHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccccCCcc
Confidence 34899999999999988775321111 234677888999999864
No 87
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=60.04 E-value=26 Score=36.56 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=45.4
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEec
Q 010467 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (510)
Q Consensus 59 ~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~ 138 (510)
++.++|+..=..|+.+..+.++++++|++.||.. . .+.+ ...+ ++++.. |+. ...+++.+|+
T Consensus 3 ~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~-~---~~~~--------~~~~-~~~~~~-g~~----~~~i~~~~H~ 64 (370)
T TIGR01246 3 ELAKELISRPSVTPNDAGCQDIIAERLEKLGFEI-E---WMHF--------GDTK-NLWATR-GTG----EPVLAFAGHT 64 (370)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEE-E---EEec--------CCCc-eEEEEe-cCC----CcEEEEEccc
Confidence 4667788888888888999999999999999962 1 1111 1122 777763 432 2248999999
Q ss_pred cCC
Q 010467 139 DSP 141 (510)
Q Consensus 139 Dsp 141 (510)
|-.
T Consensus 65 DtV 67 (370)
T TIGR01246 65 DVV 67 (370)
T ss_pred ccc
Confidence 986
No 88
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=59.93 E-value=26 Score=37.34 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCCC
Q 010467 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (510)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp~ 142 (510)
+..+.+++.+.|++.||. ... ...+ ||+|...|... ....+++.+|+|...
T Consensus 36 e~~~a~~l~~~l~~~g~~-~~~--------------~~~~-nl~a~~~g~~~--~~~~l~l~gH~DtVp 86 (413)
T PRK09290 36 DLQARDLFAEWMEAAGLT-VRV--------------DAVG-NLFGRLEGRDP--DAPAVLTGSHLDTVP 86 (413)
T ss_pred HHHHHHHHHHHHHHcCCE-EEE--------------cCCC-cEEEEecCCCC--CCCEEEEecCccCCC
Confidence 677899999999999995 211 1123 78888644321 123599999999864
No 89
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=59.92 E-value=8.1 Score=41.05 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCC
Q 010467 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (510)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp 141 (510)
++.+++++.+.|++.||+- . +...+ |++|...|... ....+++.+|+|..
T Consensus 39 e~~~~~~l~~~l~~~G~~~-~--------------~~~~~-n~~a~~~g~~~--~~~~l~l~~H~DtV 88 (412)
T PRK12893 39 DREARDLLAQWMEEAGLTV-S--------------VDAIG-NLFGRRAGTDP--DAPPVLIGSHLDTQ 88 (412)
T ss_pred HHHHHHHHHHHHHHcCCEE-E--------------EcCCC-cEEEEeCCCCC--CCCEEEEEecccCC
Confidence 6888999999999999952 1 11123 78887655431 12359999999996
No 90
>PRK06446 hypothetical protein; Provisional
Probab=59.72 E-value=11 Score=40.72 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=32.5
Q ss_pred ecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCC
Q 010467 301 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (510)
Q Consensus 301 ~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~g 349 (510)
.=+.-|+..++.++|.|+..+... .. ......+++...||+|+.|
T Consensus 98 GRGa~DmKgglaa~l~A~~~l~~~-~~---~~~~i~~~~~~dEE~g~~g 142 (436)
T PRK06446 98 ARGASDNKGTLMARLFAIKHLIDK-HK---LNVNVKFLYEGEEEIGSPN 142 (436)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHc-CC---CCCCEEEEEEcccccCCHh
Confidence 345589999999999999876421 01 2335677889999999764
No 91
>PRK07318 dipeptidase PepV; Reviewed
Probab=59.54 E-value=10 Score=41.32 Aligned_cols=44 Identities=16% Similarity=-0.002 Sum_probs=31.7
Q ss_pred cchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 304 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 304 rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
..|+..++.+++.|+..++.. .. .......++++..||+|+.|+
T Consensus 116 ~~DmKgg~aa~l~Al~~l~~~--g~-~~~~~i~l~~~~DEE~g~~G~ 159 (466)
T PRK07318 116 TSDDKGPTMAAYYALKIIKEL--GL-PLSKKVRFIVGTDEESGWKCM 159 (466)
T ss_pred cccCcHHHHHHHHHHHHHHHc--CC-CCCccEEEEEEcccccCchhH
Confidence 379999999999998877532 11 113346778889999998654
No 92
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=58.91 E-value=25 Score=36.24 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHC-CCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEE
Q 010467 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDA-GFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~-GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~ 135 (510)
+.++.++|+++=..|..+..+++++++.|++. ||+. . +.+.++++.. +... .+.+++-
T Consensus 9 ~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~-~----------------~~~~~~~~~~-~~~~---~~~i~l~ 67 (352)
T PRK13007 9 LAELTAALVDIPSVSGDEKALADAVEAALRALPHLEV-I----------------RHGNSVVART-DLGR---PSRVVLA 67 (352)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceE-E----------------ecCCeEEEEc-cCCC---CCeEEEE
Confidence 45566777777777788899999999999995 7641 1 1233688775 3221 1248999
Q ss_pred EeccCCCc
Q 010467 136 AHTDSPCL 143 (510)
Q Consensus 136 AH~Dsp~l 143 (510)
+|+|....
T Consensus 68 ~H~Dtvp~ 75 (352)
T PRK13007 68 GHLDTVPV 75 (352)
T ss_pred ccccccCC
Confidence 99998653
No 93
>PRK08262 hypothetical protein; Provisional
Probab=57.93 E-value=13 Score=40.65 Aligned_cols=45 Identities=24% Similarity=0.129 Sum_probs=33.0
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
+..|+..++.++|.|+..+.+... ......+++|...||+|+.|+
T Consensus 151 G~~D~Kg~~aa~L~A~~~l~~~~~---~l~~~I~llf~~dEE~g~~G~ 195 (486)
T PRK08262 151 GALDDKGSLVAILEAAEALLAQGF---QPRRTIYLAFGHDEEVGGLGA 195 (486)
T ss_pred CccccchhHHHHHHHHHHHHHcCC---CCCCeEEEEEecccccCCcCH
Confidence 347999999999999877753211 123457888999999998763
No 94
>PRK08201 hypothetical protein; Provisional
Probab=57.56 E-value=11 Score=40.70 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=30.3
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~g 349 (510)
+.-|++.++.+.|.|+..+...... ......++++..||+|+.|
T Consensus 117 G~~DmKgglaa~l~a~~~l~~~~~~---~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 117 GASDDKGQVFMHLKAVEALLKVEGT---LPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred ecccCcHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEcccccCCcc
Confidence 3469999999999888776421111 1334677888899998754
No 95
>PRK06156 hypothetical protein; Provisional
Probab=57.44 E-value=11 Score=41.84 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=31.0
Q ss_pred chhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 305 LDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
-|+..++.+++.|+..+... .. .......++|+..||+|+.|+.
T Consensus 153 ~D~Kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~~ 196 (520)
T PRK06156 153 EDDKGAIVTALYAMKAIKDS--GL-PLARRIELLVYTTEETDGDPLK 196 (520)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCceEEEEEecccccCchhHH
Confidence 69999999998887766432 11 1234577888899999987644
No 96
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=57.16 E-value=20 Score=37.01 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=33.8
Q ss_pred Cceeecccc-hhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCC
Q 010467 297 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 347 (510)
Q Consensus 297 ~e~I~s~rL-DNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS 347 (510)
+..|.|++- |++.++.++|.|+..+.. ......++++..||+|+
T Consensus 85 ~g~i~GrG~~D~Kg~~a~~l~a~~~l~~-------~~~~i~~~~~~~EE~~~ 129 (352)
T PRK13007 85 GDRLYGCGASDMKSGLAVMLHLAATLAE-------PAHDLTLVFYDCEEVEA 129 (352)
T ss_pred CCEEEccCcccccHHHHHHHHHHHHhhc-------cCCCeEEEEEecccccC
Confidence 457777766 999999999999877732 23356788899999976
No 97
>PRK07318 dipeptidase PepV; Reviewed
Probab=57.11 E-value=5.2 Score=43.55 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
+..+...+++.+++ .|.+.+... .+|+|.+.++.. |++.+-++++-. .+|++.|-+++ +|+
T Consensus 388 d~~lv~~l~~a~~~~~g~~~~~~~-----~~ggtDa~~~~~--~i~~Gp~~pg~~~~aH~~dE~v~i-~~l 450 (466)
T PRK07318 388 DDPLVKTLLKVYEKQTGLKGEEQV-----IGGGTYARLLKR--GVAFGAMFPGSEDTMHQANEYIEI-DDL 450 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeE-----EcchHhHhhCCC--eEEeCCCCCCCCCCCcCCCcceeH-HHH
Confidence 66777888888886 788877543 257888887753 676665555533 39999999998 664
No 98
>PRK08596 acetylornithine deacetylase; Validated
Probab=57.05 E-value=9 Score=41.03 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc-cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~-lsMHS~rE~~~~~~D~ 498 (510)
|......+++.+++ .|.+..... .+|+|.+.++.. .|||++.+|..- -.+|++.|-+++ +|+
T Consensus 338 ~~~~v~~l~~a~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~i-~~~ 401 (421)
T PRK08596 338 EHPAVKTLSSAHESVLSKNAILDM-----STTVTDGGWFAE-FGIPAVIYGPGTLEEAHSVNEKVEI-EQL 401 (421)
T ss_pred CchHHHHHHHHHHHHhCCCCeeeE-----Eeeecchhhhhh-cCCCEEEECCCcccccCCCCceEEH-HHH
Confidence 34444445554544 577654332 357788888765 899999999864 458999999988 654
No 99
>PLN02693 IAA-amino acid hydrolase
Probab=56.26 E-value=41 Score=36.50 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEe
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH 137 (510)
.++.++|.+.=.-|--++.+.+++++.|++.||+.. . . . .+.+++|.. |+.. ...+++-+|
T Consensus 50 ~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~-~------~-------~-~~~~via~~-g~~~---g~~i~l~~h 110 (437)
T PLN02693 50 VRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYR-Y------P-------V-AITGIIGYI-GTGE---PPFVALRAD 110 (437)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeE-e------c-------C-CCcEEEEEE-CCCC---CCEEEEEee
Confidence 345555555555666899999999999999999721 1 0 0 124788874 5321 224899999
Q ss_pred ccCCC
Q 010467 138 TDSPC 142 (510)
Q Consensus 138 ~Dsp~ 142 (510)
+|..-
T Consensus 111 ~DaVp 115 (437)
T PLN02693 111 MDALP 115 (437)
T ss_pred cCCCc
Confidence 99874
No 100
>PRK07522 acetylornithine deacetylase; Provisional
Probab=54.59 E-value=40 Score=35.21 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhccCCCh-HHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEE
Q 010467 57 SSSIVGDLLDYLNESWTP-FHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~-~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~ 135 (510)
+.++.++|++.=..|+-+ ..+.++++++|++.||+. . .|...++ .+.+++|.. |++. ...+++-
T Consensus 6 ~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~-~---~~~~~~~-------~~~nv~a~~-~~~~---~~~ill~ 70 (385)
T PRK07522 6 SLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVES-E---LIPDPEG-------DKANLFATI-GPAD---RGGIVLS 70 (385)
T ss_pred HHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeE-E---EEecCCC-------CcccEEEEe-CCCC---CCeEEEE
Confidence 344555665554555555 599999999999999962 1 1111111 123788764 4321 2359999
Q ss_pred EeccCC
Q 010467 136 AHTDSP 141 (510)
Q Consensus 136 AH~Dsp 141 (510)
+|+|-.
T Consensus 71 ~H~Dtv 76 (385)
T PRK07522 71 GHTDVV 76 (385)
T ss_pred eecccc
Confidence 999965
No 101
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=54.57 E-value=36 Score=35.95 Aligned_cols=63 Identities=16% Similarity=-0.033 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
+......+.+++++ .+-+-.... .+++|.+....++.|+|++.+|+-... +|++.|-+++ +|+
T Consensus 315 ~~~~v~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i-~~l 379 (395)
T TIGR03320 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWK-EDL 379 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----cceecccceehhhcCCCEEEECCCchhhccCCCcEEEH-HHH
Confidence 44555666666665 355443321 235554433334589999999987665 7999999998 664
No 102
>PRK09133 hypothetical protein; Provisional
Probab=53.70 E-value=10 Score=41.32 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHC--CCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEec----cc-ccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLH--NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG----IA-QLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~--~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiG----iP-~lsMHS~rE~~~~~~D~ 498 (510)
+..+...+++.+++. ++++.... .+|+|.+.++.. .|+|++.++ .+ .-.+|++.|-+++ +|+
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~~~~~~-----~~ggtDa~~~~~-~gip~~~~~~i~gp~~~~~aH~~dE~v~i-~~l 454 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVPVIPSM-----STGATDGRYLRA-AGIPTYGVSGLFGDPDDTFAHGLNERIPV-ASF 454 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCceeccc-----cccccchHHHHh-cCCCceeecCcccCcccccCCCCCCceeH-HHH
Confidence 456777788888775 77755432 257888888864 799998632 12 2358999999998 664
No 103
>PRK05111 acetylornithine deacetylase; Provisional
Probab=53.34 E-value=16 Score=38.24 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.6
Q ss_pred CCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 460 GSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 460 GsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
++|.++++. +.|+|++.+|+... .+|++.|-+++ +|+
T Consensus 329 ~~~Da~~~~-~~g~p~v~~G~g~~~~~H~~~E~v~~-~~l 366 (383)
T PRK05111 329 YCTEAPFIQ-QLGCPTLVLGPGSIEQAHQPDEYLEL-SFI 366 (383)
T ss_pred eeccHHHHH-hcCCCEEEECCCchHhCcCCCCcccH-HHH
Confidence 567777765 58999999999853 48999999988 665
No 104
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=52.72 E-value=13 Score=39.82 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCC
Q 010467 72 WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (510)
Q Consensus 72 ~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp 141 (510)
|....|.+++++.++++|++ +++|.-| ||+|...|..+ +...+++++|+|+.
T Consensus 30 ~~~~~a~~~~~~~~~~~Gl~---------------v~~D~~g-N~~~~~~g~~~--~~~~i~~gsHlDtv 81 (406)
T TIGR03176 30 PEWLAAQQQFKKRMAESGLE---------------TRFDDVG-NLYGRLVGTEF--PEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCE---------------EEEcCCC-cEEEEecCCCC--CCCeEEEeccccCC
Confidence 34567888999999999985 3456667 99998878653 24469999999986
No 105
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=52.39 E-value=35 Score=35.21 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 459 CGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
+|+|.+.++.. .|||++.+|.-.. -+|++.|-+++ +|+
T Consensus 315 ~~~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~i~i-~~l 353 (364)
T TIGR01892 315 SYGTEAPQFQE-LGAEAVVCGPGDIRQAHQPDEYVEI-EDL 353 (364)
T ss_pred cccccHHHHHh-CCCcEEEECCCChHhCCCCCceeeH-HHH
Confidence 35677777754 7999999997653 48999999988 654
No 106
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=51.70 E-value=12 Score=39.74 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCCC
Q 010467 73 TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (510)
Q Consensus 73 T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp~ 142 (510)
.+..+.+++++.|++.||+ .. ++..+ ||+|...|+.+ ....+++++|+|...
T Consensus 29 ~e~~~~~~l~~~~~~~G~~-~~--------------~~~~~-nl~a~~~g~~~--~~~~l~~~~H~DtV~ 80 (401)
T TIGR01879 29 EDREAQDLFKKRMRAAGLE-VR--------------FDEVG-NLIGRKEGTEP--PLEVVLSGSHIDTVV 80 (401)
T ss_pred HHHHHHHHHHHHHHHCCCE-EE--------------EecCC-cEEEEecCCCC--CCCEEEEecccccCC
Confidence 3566889999999999996 22 12235 89998755432 123599999999985
No 107
>PRK08201 hypothetical protein; Provisional
Probab=51.35 E-value=64 Score=34.88 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCCh---hHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTI---GPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTi---g~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
|......+.+..++ .|.+.... ..|+|+ +.+. ...|+|++.+|.-. -.+|++.|-+++ +|+
T Consensus 373 ~~~~~~~l~~a~~~~~g~~~~~~------~~gg~~~~~~~~~-~~~gip~v~~GpG~~~~~~H~~nE~v~i-~~l 439 (456)
T PRK08201 373 DHPAIQAAARAYEAVYGTEAAFT------RMGGSIPVVETFS-SQLHIPIVLMGFGLPSENFHAPNEHFHL-ENF 439 (456)
T ss_pred CCHHHHHHHHHHHHHhCCCceec------CCCCcHHHHHHHH-HHhCCCEEEecCCCCCCCCCCCCCCcCH-HHH
Confidence 34455556555554 46554321 234553 4444 34899999997653 468999999988 553
No 108
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=51.33 E-value=11 Score=39.88 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCC
Q 010467 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (510)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp 141 (510)
+..+++++.+.|++.||+ .. ++..+ |++|...|..+ ...+++.+|+|..
T Consensus 38 e~~~~~~l~~~l~~~G~~-~~--------------~~~~~-nl~a~~~g~~~---~~~l~l~gH~DtV 86 (412)
T PRK12892 38 HVAARRRLAAWCEAAGLA-VR--------------IDGIG-NVFGRLPGPGP---GPALLVGSHLDSQ 86 (412)
T ss_pred HHHHHHHHHHHHHHcCCE-EE--------------EcCCC-cEEEEecCCCC---CCeEEEEccccCC
Confidence 678889999999999995 21 11234 88887655432 2359999999986
No 109
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=50.73 E-value=1.1e+02 Score=28.63 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 010467 77 ATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (510)
Q Consensus 77 av~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g 113 (510)
......+.|++.||+++.+...|++++||=++..+.|
T Consensus 52 nT~tl~~~L~~~G~~~I~~~~~~~~q~GDI~I~g~~g 88 (145)
T PF05382_consen 52 NTETLHDWLKKNGFKKISENVDWNLQRGDIFIWGRRG 88 (145)
T ss_pred CHHHHHHHHhhCCcEEeccCCcccccCCCEEEEcCCC
Confidence 6678889999999999998888999998866654443
No 110
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=49.86 E-value=21 Score=38.97 Aligned_cols=45 Identities=20% Similarity=0.057 Sum_probs=31.5
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
...||..++.+++.|+..++.. .. .......+++...||+|+.|.
T Consensus 114 G~~D~Kg~~~a~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 114 GASDDKGPSLAAYYAMKILKEL--GL-PPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred CccccchHHHHHHHHHHHHHHh--CC-CCCCCEEEEEECccccCcccH
Confidence 4479999999988888777532 11 123356778888899998653
No 111
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=48.50 E-value=30 Score=36.46 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEeccCC
Q 010467 62 GDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (510)
Q Consensus 62 ~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH~Dsp 141 (510)
++|+.+=..|+.+..+.+++.+.|++.||..+. +. +.+.+++|.. +... ...+++.+|+|-.
T Consensus 3 ~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~------~~--------~~~~nvva~~-~~~~---~~~l~l~gH~DtV 64 (373)
T TIGR01900 3 QQIMDIFSPSDHEGPIADEIEAALNNLELEGLE------VF--------RFGDNVLART-DFGK---ASRVILAGHIDTV 64 (373)
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHhhccccCce------EE--------EECCEEEEec-CCCC---CCeEEEeCccccc
Confidence 456666666677888888999999998864321 11 1123788763 3221 1248999999976
No 112
>PRK08554 peptidase; Reviewed
Probab=47.87 E-value=26 Score=37.95 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=30.6
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 348 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ 348 (510)
+..|+..++.+++.|+..+... . ......++++..||+|+.
T Consensus 100 G~~DmKgg~aa~l~A~~~l~~~--~---~~~~i~l~~~~dEE~g~~ 140 (438)
T PRK08554 100 GSADDKGNVASVMLALKELSKE--P---LNGKVIFAFTGDEEIGGA 140 (438)
T ss_pred CcccchHHHHHHHHHHHHHHhc--C---CCCCEEEEEEcccccCcc
Confidence 4589999999999998877532 1 233467788889999864
No 113
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=47.73 E-value=57 Score=28.30 Aligned_cols=52 Identities=19% Similarity=0.038 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccccccc
Q 010467 428 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHR 487 (510)
Q Consensus 428 ~td~~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~lsMHS 487 (510)
+|+..++..+++.|+++|++++.... +++.+-....+..++-+|..++|+-.
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~--------~~~e~~~~~~~~Dvill~PQv~~~~~ 62 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG--------AYGSHYDMIPDYDLVILAPQMASYYD 62 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe--------eHHHHHHhccCCCEEEEcChHHHHHH
Confidence 78999999999999999999987653 22333233356788888888888654
No 114
>PRK07906 hypothetical protein; Provisional
Probab=47.27 E-value=21 Score=38.21 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHhhccC------CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCce
Q 010467 59 SIVGDLLDYLNES------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFH 132 (510)
Q Consensus 59 ~~a~~~~~Fl~~s------~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ 132 (510)
++.++|+.+=..+ +-+..+.+++.+.|++.||.. . .+...+ ...|++|...|+.. +...+
T Consensus 3 ~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~-~---~~~~~~--------~~~nv~~~~~g~~~--~~~~l 68 (426)
T PRK07906 3 DLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEP-T---YLESAP--------GRANVVARLPGADP--SRPAL 68 (426)
T ss_pred HHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCe-E---EeecCC--------CceEEEEEEeCCCC--CCCcE
Confidence 3556666665555 235568899999999999962 1 111111 12378887655431 12358
Q ss_pred EEEEeccCC
Q 010467 133 IIAAHTDSP 141 (510)
Q Consensus 133 ii~AH~Dsp 141 (510)
++.+|+|-.
T Consensus 69 ll~~H~DtV 77 (426)
T PRK07906 69 LVHGHLDVV 77 (426)
T ss_pred EEEcccccC
Confidence 999999965
No 115
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=47.26 E-value=23 Score=37.69 Aligned_cols=43 Identities=14% Similarity=-0.085 Sum_probs=31.8
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 348 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ 348 (510)
...|+..++.++|.|+..+.... . ......++++...||+|+.
T Consensus 120 Ga~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~v~~~~~~dEE~g~~ 162 (427)
T PRK13013 120 GACDMKGGLAASIIAAEAFLAVY--P-DFAGSIEISGTADEESGGF 162 (427)
T ss_pred cccccchHHHHHHHHHHHHHHhC--C-CCCccEEEEEEeccccCCh
Confidence 46899999999999988775321 1 1234578888999999875
No 116
>PRK05111 acetylornithine deacetylase; Provisional
Probab=46.94 E-value=59 Score=33.96 Aligned_cols=70 Identities=26% Similarity=0.236 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhccCCCh-------HHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCC
Q 010467 57 SSSIVGDLLDYLNESWTP-------FHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGN 129 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~-------~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~ 129 (510)
+.++.++|+.+=.-|+.+ ..+.+++++.|++.||. .. .+.+ ++ .....+++|.. |+. .
T Consensus 7 ~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~-~~---~~~~-~~-----~~~~~nvia~~-g~~----~ 71 (383)
T PRK05111 7 FIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFN-VE---IQPV-PG-----TRGKFNLLASL-GSG----E 71 (383)
T ss_pred HHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCe-EE---EEec-CC-----CCCCceEEEEe-CCC----C
Confidence 334445555444444432 46999999999999985 21 1111 11 11223788875 543 1
Q ss_pred CceEEEEeccCC
Q 010467 130 GFHIIAAHTDSP 141 (510)
Q Consensus 130 g~~ii~AH~Dsp 141 (510)
+.+++.+|+|-.
T Consensus 72 ~~il~~~H~Dvv 83 (383)
T PRK05111 72 GGLLLAGHTDTV 83 (383)
T ss_pred CeEEEEeeecee
Confidence 248999999986
No 117
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=45.88 E-value=38 Score=35.72 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=26.8
Q ss_pred CCCChhHHHhcCCCCcEEEecccccc-cccHHHhhc
Q 010467 459 CGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNY 493 (510)
Q Consensus 459 gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~ 493 (510)
.|+|.+.++. ..|||++.+|.--.. +|++.|-++
T Consensus 339 ~g~tD~~~~~-~~gip~v~~Gpg~~~~aH~~dE~v~ 373 (373)
T TIGR01900 339 FGWTDVARFS-ALGIPALNFGAGDPLFAHKHDEQCP 373 (373)
T ss_pred cCCccHHHHH-hcCCCEEEeCCCChhhccCCCCCCC
Confidence 3667777765 479999999998765 799998763
No 118
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=45.34 E-value=11 Score=39.79 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEEEe
Q 010467 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~AH 137 (510)
.++.++|+++=..+..+..+.+++.+.|++.||.... ++..+ +++|.. |.. ...+++.+|
T Consensus 16 ~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~--------------~~~~~-n~~~~~-g~~----~~~l~l~~H 75 (395)
T TIGR03320 16 IRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVE--------------IDPMG-NVLGYI-GHG----PKLIAMDAH 75 (395)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEE--------------ECCCC-CEEEEe-CCC----CcEEEEEec
Confidence 3444555555555667789999999999999996211 01123 677764 532 124889999
Q ss_pred ccCC
Q 010467 138 TDSP 141 (510)
Q Consensus 138 ~Dsp 141 (510)
+|..
T Consensus 76 ~DtV 79 (395)
T TIGR03320 76 IDTV 79 (395)
T ss_pred cccc
Confidence 9986
No 119
>PRK07907 hypothetical protein; Provisional
Probab=45.07 E-value=50 Score=35.68 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCC-h-hHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-I-GPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsT-i-g~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
|......+.+.+++ .|.+.... . .||++ . +.+.....++|++-.|.-. -.+|++.|-+++ +|+
T Consensus 365 ~~~~~~~l~~a~~~~~g~~~~~~--~---~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i-~~l 432 (449)
T PRK07907 365 SGPAYDAARAAMREAWGKDPVDM--G---MGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHL-GEL 432 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCceec--C---CCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCH-HHH
Confidence 44555555555554 47764321 1 23332 1 2233333468999899754 468999999998 654
No 120
>PRK07907 hypothetical protein; Provisional
Probab=45.02 E-value=33 Score=37.06 Aligned_cols=43 Identities=28% Similarity=0.183 Sum_probs=30.8
Q ss_pred cccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCC
Q 010467 302 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (510)
Q Consensus 302 s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga 350 (510)
-+..|+..++.+++.|+..+ .. .+ .....++++..||.|+.|.
T Consensus 120 rG~~D~Kg~~aa~l~a~~~l-~~--~~---~~~i~~~~~~dEE~g~~g~ 162 (449)
T PRK07907 120 RGAADDKGGIAMHLAALRAL-GG--DL---PVGVTVFVEGEEEMGSPSL 162 (449)
T ss_pred CCccCCcHHHHHHHHHHHHh-cc--CC---CCcEEEEEEcCcccCCccH
Confidence 35589999999999999877 21 11 2345667788899998543
No 121
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=45.01 E-value=26 Score=39.62 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=32.3
Q ss_pred eecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEccccc
Q 010467 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEV 345 (510)
Q Consensus 300 I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEV 345 (510)
..++++|++.|+.++|+++..+.+. .. .......+++|.+||.
T Consensus 264 ~~gG~~DG~~Gv~a~lea~~~l~~~--~~-~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 264 RNGGKYDGRLGIFVPMACVRELHRQ--GR-RLPFGLEVVGFAEEEG 306 (591)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHc--CC-CCCCCeEEEEecCCcc
Confidence 4578899999999999999988643 11 1133467788999996
No 122
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=44.72 E-value=26 Score=38.11 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=32.0
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCCCc
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~ga~ 351 (510)
+..|+..++.+++.|+..+... .. .......++++..||+|+.|..
T Consensus 103 Ga~D~KG~laa~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~~ 148 (447)
T TIGR01887 103 GTLDDKGPTIAALYAMKILKEL--GL-KLKKKIRFIFGTDEETGWACID 148 (447)
T ss_pred CcccCcHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEECCcccCcHhHH
Confidence 4469999999999888776432 11 1233567788889999986633
No 123
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=44.12 E-value=21 Score=38.11 Aligned_cols=62 Identities=15% Similarity=-0.020 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc--cccccHHHhhcccccC
Q 010467 432 VTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 432 ~~~a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~--lsMHS~rE~~~~~~D~ 498 (510)
.+...+++.+++.++++-... ...+|+|.+.++.. .|+|++-+|... -.+|++.|-+++ +|+
T Consensus 329 ~l~~~~~~~~~~~~~~~~~~~---~~~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~nE~i~i-~~~ 392 (410)
T PRK06133 329 ALAEHAQGIYGELGRRLEPID---MGTGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSNDEYIEL-NSI 392 (410)
T ss_pred HHHHHHHHHHHHcCCCccccc---cCCCCCchHHHHHh-cCCCceEecccCCCCCCCCCCcEEEc-ccH
Confidence 455667777777776643211 11357787766655 699999855433 559999999999 664
No 124
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=43.76 E-value=28 Score=39.47 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=37.1
Q ss_pred CccccCCC-CceeecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEccccc
Q 010467 289 PSCLGGAN-NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEV 345 (510)
Q Consensus 289 ~~~~~Gl~-~e~I~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEV 345 (510)
|+-.+|-+ +.-+.++++|.+.|+.++|+++..+... .. .......++.|.+||-
T Consensus 252 p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~~--~~-~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 252 KTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHEQ--GE-RLPFHFEVIAFAEEEG 306 (591)
T ss_pred CeEEEeccccccCCCCccccHHHHHHHHHHHHHHHHc--CC-CCCCCeEEEEecCCCc
Confidence 34444433 2345689999999999999999888643 11 1233467788889995
No 125
>PRK07079 hypothetical protein; Provisional
Probab=43.15 E-value=29 Score=37.70 Aligned_cols=47 Identities=21% Similarity=0.064 Sum_probs=32.0
Q ss_pred ecccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCCCC
Q 010467 301 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (510)
Q Consensus 301 ~s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS~g 349 (510)
.=+..|+..++.+.|.|+..+.... .. ......++++...||+|+.|
T Consensus 122 GRGa~DmKgg~aa~l~A~~~l~~~~-~~-~~~~~i~~~~~~dEE~g~~G 168 (469)
T PRK07079 122 GRGTADNKGQHTINLAALEQVLAAR-GG-RLGFNVKLLIEMGEEIGSPG 168 (469)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHhc-CC-CCCCCEEEEEECccccCCcc
Confidence 3456899999998888877753210 00 12345788999999999865
No 126
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=42.07 E-value=26 Score=37.32 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCC-cEEEeccccc-ccccHHHhhcccccC
Q 010467 432 VTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGI-RTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 432 ~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi-~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
.....+.+.+++ .|.+.-... .+|+|.+.+++....+ |++-+|.-.. .+|++.|-+.+ +|+
T Consensus 344 ~lv~~l~~a~~~~~g~~~~~~~-----~~g~~D~~~~~~~g~~~~~v~fGPg~~~~aH~~nE~v~i-~~l 407 (427)
T PRK13013 344 PVVRSVAAAIERVLGRQADYVV-----SPGTYDQKHIDRIGKLKNCIAYGPGILDLAHQPDEWVGI-ADM 407 (427)
T ss_pred HHHHHHHHHHHHhhCCCCceee-----cCccCCHHHHHhcCCCCCEEEECCCCccccCCCCceeEH-HHH
Confidence 556666666665 676643322 3577788887664324 6888996443 48999999998 665
No 127
>PRK09104 hypothetical protein; Validated
Probab=41.45 E-value=93 Score=33.73 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCC-hhHHHhcCCCCcEEEeccccc--ccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQL--SMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsT-ig~i~as~~Gi~tiDiGiP~l--sMHS~rE~~~~~~D~ 498 (510)
+......+.+.+++ .+.+.... . .+|++ +...+....|||++.+|.... .+|++.|-+++ +|+
T Consensus 381 ~~~~v~~l~~~~~~~~~~~~~~~--~---~~g~~~~~~~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i-~~l 447 (464)
T PRK09104 381 DSPALAAAKAALSDEWGKPAVLI--G---SGGSIPIVGDFKRILGMDSLLVGFGLDDDRIHSPNEKYDL-ESF 447 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCceec--C---CCCcHHHHHHHHHHhCCCEEEecCCCCCCCCcCCCCCcCH-HHH
Confidence 45566666666654 55554321 1 24444 333333447999999987533 59999999998 665
No 128
>PRK07079 hypothetical protein; Provisional
Probab=41.11 E-value=25 Score=38.31 Aligned_cols=64 Identities=13% Similarity=-0.108 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEec--ccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG--IAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiG--iP~lsMHS~rE~~~~~~D~ 498 (510)
+......+++.+++ .+.+.+.... .+|+|.+.+.....|||++..| .|--.+|++-|-+++ +|+
T Consensus 374 ~~~~v~~l~~a~~~~~g~~~~~~~~----~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l-~~l 440 (469)
T PRK07079 374 DDPWVRWALASIARTTGKKPALLPN----LGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLA-SVA 440 (469)
T ss_pred CCHHHHHHHHHHHHHhCCCCceecC----CCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCH-HHH
Confidence 44455555555554 4555444321 2455555555555899999664 333358999999998 664
No 129
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=40.65 E-value=22 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCCCceeEEeeE
Q 010467 260 PQLMQILSQELGCGTDDIASIELN 283 (510)
Q Consensus 260 ~~ll~~la~~~gV~~~Div~~dl~ 283 (510)
..-|+-|++.+.|+||||++|+..
T Consensus 45 ~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 45 LSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred HHHHHHHHHHcCCChhheeEEecC
Confidence 456677899999999999998743
No 130
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=40.11 E-value=76 Score=33.61 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhccC-CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCCCCceEEE
Q 010467 57 SSSIVGDLLDYLNES-WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (510)
Q Consensus 57 ~~~~a~~~~~Fl~~s-~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~~g~~ii~ 135 (510)
+.+..++++.|-..+ .....+.+++++.|++.||.-.. +...+.. +..|+++...+... ...+++.
T Consensus 15 ~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~----~~~~~~~------~~~n~~~~~~~~~~---~~~l~l~ 81 (409)
T COG0624 15 ILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEE----DEVGPGP------GRPNLVARLGGGDG---GPTLLLG 81 (409)
T ss_pred HHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEE----eecCCCC------CceEEEEEecCCCC---CCeEEEe
Confidence 445677888887777 77999999999999999986211 1111111 12278777655431 1359999
Q ss_pred EeccCC
Q 010467 136 AHTDSP 141 (510)
Q Consensus 136 AH~Dsp 141 (510)
+|+|..
T Consensus 82 ~H~DvV 87 (409)
T COG0624 82 GHLDVV 87 (409)
T ss_pred cccccc
Confidence 999965
No 131
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=39.47 E-value=86 Score=28.56 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccC---------CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccCCC
Q 010467 58 SSIVGDLLDYLNES---------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVG 128 (510)
Q Consensus 58 ~~~a~~~~~Fl~~s---------~T~~hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~~~~~~ 128 (510)
..+-+++...++.| ||.-+|++..++.+++.|+..++..+. ..+-+-+|+.-|.++--.+.-... +
T Consensus 22 ~~Lr~~L~~~~~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~~--~~~~GpVfLK~N~~tg~~yv~~y~---G 96 (125)
T PF08854_consen 22 KKLRQALRLLASNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLDS--PPIEGPVFLKANQKTGSCYVRSYT---G 96 (125)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTT--------------SSSEEEEEETTT--EEEEE-----S
T ss_pred HHHHHHHHHHHhccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCCC--CCCCCCEEEEecCCCCcEEEeecC---C
Confidence 33556666666654 999999999999999999998654332 122467888877765444432221 2
Q ss_pred CCc-eEEEEeccCCCc
Q 010467 129 NGF-HIIAAHTDSPCL 143 (510)
Q Consensus 129 ~g~-~ii~AH~Dsp~l 143 (510)
.+. ++|..|.|+...
T Consensus 97 ~~rGVLiScqs~~~~~ 112 (125)
T PF08854_consen 97 LGRGVLISCQSDDDEG 112 (125)
T ss_dssp --BEEEEEEE-SSTTS
T ss_pred ccceEEEEeccCCccc
Confidence 233 899999988653
No 132
>PRK07205 hypothetical protein; Provisional
Probab=36.10 E-value=86 Score=33.79 Aligned_cols=58 Identities=10% Similarity=0.007 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecc--c--ccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGi--P--~lsMHS~rE~~~~~~D~ 498 (510)
|..+...+++++++ .+.+.-... .+|+|.+. ...+++.+|. | ...+|++.|-+++ +|+
T Consensus 365 ~~~lv~~l~~~~~~~~g~~~~~~~-----~gg~~~~~-----~~~~~i~~G~~~Pg~~~~aH~~nE~v~i-~~l 427 (444)
T PRK07205 365 DSELVSTLMSVYQEKTGDDSPAQS-----SGGATFAR-----TMPNCVAFGALFPGAPQTEHQANEHIVL-EDL 427 (444)
T ss_pred CcHHHHHHHHHHHHHhCCCCceEE-----eccHHHHH-----hCCCcEEECCccCCCCCCCcCcccCccH-HHH
Confidence 55666777777765 455432211 13444332 2347888884 4 3569999999988 664
No 133
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=35.69 E-value=23 Score=37.48 Aligned_cols=63 Identities=16% Similarity=-0.033 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccccc-cccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~ls-MHS~rE~~~~~~D~ 498 (510)
|......+.+.+++ .|.+..... .+++|.|....++.|+|++.+|+-... +|++.|-+++ +|+
T Consensus 315 ~~~~~~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i-~~l 379 (395)
T TIGR03526 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWK-EDL 379 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----eeeecccceehhhcCCCEEEECCcchhhccCCCceEEH-HHH
Confidence 44555666666654 444433321 234454433333489999999987654 8999999998 664
No 134
>PRK08737 acetylornithine deacetylase; Provisional
Probab=31.27 E-value=61 Score=34.16 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.2
Q ss_pred ccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCC
Q 010467 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 347 (510)
Q Consensus 303 ~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVGS 347 (510)
+..|.+.++.+++.|+... .....++++..||+|+
T Consensus 99 Ga~DmKg~~aa~l~a~~~~----------~~~v~~~~~~dEE~g~ 133 (364)
T PRK08737 99 GVCDIKGAAAALLAAANAG----------DGDAAFLFSSDEEAND 133 (364)
T ss_pred CcccchHHHHHHHHHHHcc----------CCCEEEEEEcccccCc
Confidence 4567778888888887632 1246889999999987
No 135
>PRK06446 hypothetical protein; Provisional
Probab=31.22 E-value=33 Score=36.94 Aligned_cols=64 Identities=16% Similarity=0.011 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEE--ec--ccccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD--CG--IAQLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiD--iG--iP~lsMHS~rE~~~~~~D~ 498 (510)
+......+.+..++ .+.+-+... ..+|+|.+.+.....|+|++. +| .|--.+|++.|-+++ +++
T Consensus 351 ~~~~v~~l~~a~~~~~g~~~~~~~----~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i-~~l 419 (436)
T PRK06446 351 NSKVVKAMIESAKRVYGTEPVVIP----NSAGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRI-DDY 419 (436)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec----CCCCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCH-HHH
Confidence 44555556555554 355444332 134555555555558999875 43 346789999999988 553
No 136
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=31.20 E-value=46 Score=39.10 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=29.4
Q ss_pred cEEEEcCC---CCcccCHHHH----HHHHHHHHHCCCCeeEEEeecCCCCCCChh
Q 010467 417 LVIKHNAN---QRYATSGVTA----FLFKEIAKLHNLPTQEFVVRNDMGCGSTIG 464 (510)
Q Consensus 417 ~vIk~~~~---~~y~td~~~~----a~l~~la~~~~Ip~Q~~~~r~D~~gGsTig 464 (510)
++|.|+++ +.|.+..... ..+.++|+++||.++.|..| |||+|
T Consensus 561 VMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGR-----GGtVG 610 (910)
T COG2352 561 VMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGR-----GGSVG 610 (910)
T ss_pred EEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccC-----CCCCC
Confidence 56666443 3465544432 45899999999999999964 66654
No 137
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=29.98 E-value=53 Score=28.21 Aligned_cols=22 Identities=41% Similarity=0.317 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeEE
Q 010467 430 SGVTAFLFKEIAKLHNLPTQEF 451 (510)
Q Consensus 430 d~~~~a~l~~la~~~~Ip~Q~~ 451 (510)
....+..+.+.|+++|||+|.-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~ed 51 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQED 51 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccC
Confidence 5678899999999999999974
No 138
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.84 E-value=71 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEE
Q 010467 79 AEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAF 119 (510)
Q Consensus 79 ~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf 119 (510)
..+++.|+++||+-..-...+++++.+-+.++-.++++.++
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~ 51 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGI 51 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccc
Confidence 46889999999987776655567777777777666666544
No 139
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=24.56 E-value=76 Score=33.60 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEecccc-cccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~-lsMHS~rE~~~~~~D~ 498 (510)
+....+.+++.+++ .|.+ ..... .||++.+.+.+. .|+|++..|... =-+|++.|-+.+ +|+
T Consensus 329 ~~~~v~~l~~~~~~~~g~~--~~~~~---~G~~~da~~~~~-~~~~~~~fgp~~~~~~H~~~E~v~i-~~l 392 (409)
T COG0624 329 DSPLVAALAEAAEELLGLP--PEVST---GGGTHDARFFAR-LGIPAVIFGPGDIGLAHQPNEYVEL-EDL 392 (409)
T ss_pred chHHHHHHHHHHHHhhCCC--ceecC---CCCcchHHHHHh-cCCeeEEECCCCcccccCCCceeeH-HHH
Confidence 55666666666665 5776 32322 344456666665 779999999988 699999999998 654
No 140
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=23.98 E-value=48 Score=36.23 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeecCCCCCCChhHHHhcCCCCcEEEeccccc-ccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~-~~Ip~Q~~~~r~D~~gGsTig~i~as~~Gi~tiDiGiP~l-sMHS~rE~~~~~~D~ 498 (510)
+..+...+.+.+++ .|.+.+... .+|+|.+.++. .||+++.+|..-. .+|++.|-+.+ +++
T Consensus 388 ds~lv~~l~~a~~~v~G~~~~~~~-----~~ggTDa~~~~--~~i~~gv~gPG~~~~aH~~dE~V~i-~el 450 (466)
T TIGR01886 388 SDPLVQTLLKVYEKHTGKKGHEVI-----IGGGTYGRLLE--RGVAYGAMFEGGPDVMHQANEFMML-DDL 450 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCccHHHhcc--cccccccccCCCCCCccCCCcceEH-HHH
Confidence 44566667776665 355544432 25889888876 3789888888754 48999999998 654
No 141
>PRK08262 hypothetical protein; Provisional
Probab=23.47 E-value=1.4e+02 Score=32.52 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHCC--CCeeEEEeecCCCCCCChhHHHhcCC----CCcEEEeccc-ccccccHHHhhcccccC
Q 010467 430 SGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGV----GIRTVDCGIA-QLSMHRYLNFNYFVTDA 498 (510)
Q Consensus 430 d~~~~a~l~~la~~~~--Ip~Q~~~~r~D~~gGsTig~i~as~~----Gi~tiDiGiP-~lsMHS~rE~~~~~~D~ 498 (510)
|......+++.+++.. .+..... .+|||.+.++.... +++++..|.- .-.+|++.|-+++ +|+
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~-----~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i-~~l 469 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYL-----VVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISV-ANY 469 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccce-----ecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeH-HHH
Confidence 5667777888887654 3333222 25788888876531 2344444432 2357999999988 664
No 142
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.19 E-value=29 Score=31.86 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.1
Q ss_pred CCC-CChhHHHhcCCCCcEEEec
Q 010467 458 GCG-STIGPILASGVGIRTVDCG 479 (510)
Q Consensus 458 ~gG-sTig~i~as~~Gi~tiDiG 479 (510)
++| ||+|.++|.++|.|-+|.-
T Consensus 2 GsGKStvg~~lA~~L~~~fiD~D 24 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLGRPFIDLD 24 (158)
T ss_dssp TSSHHHHHHHHHHHHTSEEEEHH
T ss_pred CCcHHHHHHHHHHHhCCCccccC
Confidence 456 8899999999999999974
No 143
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=22.01 E-value=58 Score=34.76 Aligned_cols=72 Identities=25% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCC-eeEEEeecCCCCCC-Ch--hHHHhcCCCCcEEEe-cccccccccHH
Q 010467 415 KGLVIKHNANQRYATSGVTAFLFKEIAKLHNLP-TQEFVVRNDMGCGS-TI--GPILASGVGIRTVDC-GIAQLSMHRYL 489 (510)
Q Consensus 415 ~G~vIk~~~~~~y~td~~~~a~l~~la~~~~Ip-~Q~~~~r~D~~gGs-Ti--g~i~as~~Gi~tiDi-GiP~lsMHS~r 489 (510)
+|.|+-+--|..-+.=......|..+++|+.=- +- --||.||+ || |-+.-+-+|-|.|.- --.+|.||++.
T Consensus 329 kGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~la----iedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~ 404 (457)
T KOG0559|consen 329 KGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLA----IEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIK 404 (457)
T ss_pred CceeeeeecccccccHHHHHHHHHHHHHhhccCcee----eeeccCceEEEeCCcEeeeeccCcccCCchhhhhhccccc
Confidence 466654432322222234445566677666421 11 12444443 33 344444455555432 12358999966
Q ss_pred H
Q 010467 490 N 490 (510)
Q Consensus 490 E 490 (510)
|
T Consensus 405 e 405 (457)
T KOG0559|consen 405 E 405 (457)
T ss_pred c
Confidence 5
No 144
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=21.95 E-value=96 Score=33.71 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=39.1
Q ss_pred cccchhhhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccC-CCCCccCCC
Q 010467 302 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG-SDSYQGAGA 355 (510)
Q Consensus 302 s~rLDNr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~d~EEVG-S~ga~GA~s 355 (510)
-+++|+.....+-|+|+..+..+ . ..+..+..+.|-..|||| -.|..+.+.
T Consensus 125 RGaqD~K~~~va~leAir~L~~~--g-~kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 125 RGAQDMKCVGVAYLEAIRNLKAS--G-FKPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred ccccchHhHHHHHHHHHHHHHhc--C-CCcCceEEEEecCchhccCcchHHHHhh
Confidence 46799999999999999998643 1 124667788888889997 677776665
No 145
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.64 E-value=2e+02 Score=24.03 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCC
Q 010467 76 HATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQ 123 (510)
Q Consensus 76 hav~~~~~~L~~~GF~el~e~~~w~l~pg~ky~~~r~g~sliAf~~G~ 123 (510)
..++.+.++|+++|-+...+...|. ...-|+.|.+| +.+-+..|.
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~DP~G-n~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPPGAD--PDGVWFRDPDG-NLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCCcCC--CCEEEEECCCC-CEEEEecCC
Confidence 5678899999999987554433332 12357778888 888887664
Done!