Query 010468
Match_columns 510
No_of_seqs 210 out of 518
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qmy_A Protease, leader protea 15.6 58 0.002 29.7 1.7 20 365-384 23-42 (167)
2 1rpq_W Peptide E131; receptor- 13.6 32 0.0011 21.9 -0.5 16 280-295 3-18 (26)
3 3fwb_B Nuclear mRNA export pro 7.0 2.5E+02 0.0087 21.2 2.3 24 422-445 10-33 (55)
4 3lim_A Fragaceatoxin C; pore f 6.3 1.3E+02 0.0044 28.1 0.4 11 378-388 108-118 (178)
5 2lx0_A Membrane fusion protein 4.7 8.1E+02 0.028 16.1 3.5 27 157-183 5-31 (32)
6 1gwy_A Sticholysin II; cytolys 4.4 2E+02 0.007 26.7 0.5 10 378-387 107-116 (175)
7 2r9r_B Paddle chimera voltage 4.4 1.6E+03 0.054 23.4 7.5 34 354-391 245-279 (514)
8 3fwc_B Nuclear mRNA export pro 4.0 4.7E+02 0.016 21.3 2.3 25 421-445 39-63 (85)
9 1jxc_A Putative trypsin inhibi 3.8 1.5E+02 0.0052 23.3 -0.8 10 278-287 27-36 (68)
10 2l5y_A Stromal interaction mol 3.3 5.9E+02 0.02 22.9 2.4 28 381-410 58-94 (150)
No 1
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=15.61 E-value=58 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.763 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccCcccccc
Q 010468 365 LWLNILAELLRFGDREFYKD 384 (510)
Q Consensus 365 ~~LN~~AEl~rFgDR~FY~D 384 (510)
||||.+-.|+|.-|..|++-
T Consensus 23 cWLNtilQLfryvdepfFd~ 42 (167)
T 1qmy_A 23 AWLNAILQLFRYVEEPFFDW 42 (167)
T ss_dssp HHHHHHHHHHHHHTCCTTHH
T ss_pred hHHHHHHHHHHHcCccchhh
Confidence 99999999999999999853
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=13.58 E-value=32 Score=21.93 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=12.3
Q ss_pred ccceeeeccCCCCCCc
Q 010468 280 APTLCYQTSYPRTASV 295 (510)
Q Consensus 280 aPTL~Yq~~YPRT~~I 295 (510)
+|-.||++.|---+.+
T Consensus 3 cphfcyeldyelcpdv 18 (26)
T 1rpq_W 3 CPHFCYELDYELCPDV 18 (26)
T ss_dssp CCTHHHHSSSCCSCGG
T ss_pred CCeeeeecCcccCCce
Confidence 6889999998766543
No 3
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=7.00 E-value=2.5e+02 Score=21.24 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 010468 422 GAALLIAFTVSAIFHELCIAVPCH 445 (510)
Q Consensus 422 ~~A~l~vF~vSA~~HE~i~~v~~~ 445 (510)
....+..=+.+|++||.+.-+.+-
T Consensus 10 iI~sLs~eLy~AFihE~lY~~~le 33 (55)
T 3fwb_B 10 FIDTMTRELYDAFLHERLYLIYMD 33 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566668999999998765543
No 4
>3lim_A Fragaceatoxin C; pore forming toxin, actinoporins; HET: LDA; 1.80A {Actinia fragacea} PDB: 3zwj_A 3zwg_A 1kd6_A 1iaz_A 1tzq_A
Probab=6.30 E-value=1.3e+02 Score=28.07 Aligned_cols=11 Identities=45% Similarity=1.507 Sum_probs=8.2
Q ss_pred Ccccccccccc
Q 010468 378 DREFYKDWWNA 388 (510)
Q Consensus 378 DR~FY~DWWNs 388 (510)
|..||+.|||-
T Consensus 108 DyNlYsNW~~V 118 (178)
T 3lim_A 108 DYNWYSNWWNV 118 (178)
T ss_dssp CTTTCCCEEEE
T ss_pred chhhhhheeEE
Confidence 77788888863
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.73 E-value=8.1e+02 Score=16.15 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.6
Q ss_pred chhhHHHHhhhhhHHHHHHHHHHHHhh
Q 010468 157 DWPLLMCCLTLPLFPLSAFLVEKLAQR 183 (510)
Q Consensus 157 ~W~~~m~~l~l~v~~l~a~~iEk~~~~ 183 (510)
.|..+.....+..|..+.||.-|..++
T Consensus 5 iweviaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466555555566677778888776654
No 6
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1 PDB: 1o71_A 1o72_A* 2ks3_A 2l38_A 2l2b_A 2ks4_A
Probab=4.42 E-value=2e+02 Score=26.69 Aligned_cols=10 Identities=40% Similarity=1.601 Sum_probs=4.5
Q ss_pred Cccccccccc
Q 010468 378 DREFYKDWWN 387 (510)
Q Consensus 378 DR~FY~DWWN 387 (510)
|=.||+.|||
T Consensus 107 DYNlYsNW~~ 116 (175)
T 1gwy_A 107 DYNWYSNWWD 116 (175)
T ss_dssp CCSSCCCEEE
T ss_pred cccchhheeE
Confidence 3344444444
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=4.35 E-value=1.6e+03 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc-cccccccccccH
Q 010468 354 VWLCMFYCFFHLWLNILAELLRFGDR-EFYKDWWNAKTV 391 (510)
Q Consensus 354 ~~Ll~Fy~~fh~~LN~~AEl~rFgDR-~FY~DWWNsts~ 391 (510)
-+++.....++..+++++. ++| .|.+++||--++
T Consensus 245 e~i~~~iFtiE~ilR~~~~----~~k~~Y~ks~wniiDl 279 (514)
T 2r9r_B 245 ETLCIIWFSFEFLVRFFAC----PSKAGFFTNIMNIIDI 279 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHS----SCSSSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----CcHHHHHhchhHHHHH
Confidence 3345555677888887763 565 899999986554
No 8
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=4.02 E-value=4.7e+02 Score=21.31 Aligned_cols=25 Identities=12% Similarity=-0.030 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 010468 421 KGAALLIAFTVSAIFHELCIAVPCH 445 (510)
Q Consensus 421 k~~A~l~vF~vSA~~HE~i~~v~~~ 445 (510)
+....+.-=+.+|++||-+.-+.+-
T Consensus 39 ~iI~sLs~eLy~AFihE~lY~~~le 63 (85)
T 3fwc_B 39 DFIDTMTRELYDAFLHERLYLIYMD 63 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677778999999988665543
No 9
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=3.81 E-value=1.5e+02 Score=23.27 Aligned_cols=10 Identities=40% Similarity=1.035 Sum_probs=7.9
Q ss_pred hhccceeeec
Q 010468 278 MVAPTLCYQT 287 (510)
Q Consensus 278 l~aPTL~Yq~ 287 (510)
-+.||+|||-
T Consensus 27 rifPt~Cy~~ 36 (68)
T 1jxc_A 27 RIFPTICYTR 36 (68)
T ss_dssp TCCCCHHHHH
T ss_pred hhhhHHHHHH
Confidence 4679999974
No 10
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=3.27 E-value=5.9e+02 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.920 Sum_probs=20.1
Q ss_pred ccccccccccHHHHHHhccc-cHH--------HHhhhhc
Q 010468 381 FYKDWWNAKTVEEYWRMWNM-PVH--------KWMVRHI 410 (510)
Q Consensus 381 FY~DWWNsts~~efwR~WN~-pVH--------~wL~rhV 410 (510)
.++| .--|++|.|..|-. +|| +||.+.|
T Consensus 58 h~~D--~~Isv~eLw~~W~~s~V~nWTvedV~~WL~~~v 94 (150)
T 2l5y_A 58 HRED--KHITIEDLWKRWKTSEVHNWTLEDTLQWLIEFV 94 (150)
T ss_dssp TTTC--CCBCHHHHHHHHHTSHHHHCCHHHHHHHHHHHT
T ss_pred cCCC--CeeeHHHHHHHHccCcchhCCHHHHHHHHHHcC
Confidence 4566 66789999998854 555 5677766
Done!