BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010469
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 220/431 (51%), Gaps = 42/431 (9%)
Query: 94 DVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DV+ L + NF I + ++VEF+APWCGH + T LK V LAK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAK 58
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHK-AYNGGRTKDAIVTWIKKKIGPGIYNITTL 209
VD T ++Y V G+PT+ F DG+ AY+G RT D IV+ +KK+ GP + T
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTE 118
Query: 210 DEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSK- 267
+E ++ ++ + ++G+ + S + SE L AS L D+ F T + + + +
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEG 178
Query: 268 --VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIK 325
+ RP+ + K E + ++Y + K I F+ N + T +N + I+
Sbjct: 179 IILFRPSHLTNKFEDKTVAY-TEQKMTSGKIKKFIQENIFGICPHMTEDN-----KDLIQ 232
Query: 326 NQLLLFAVSN-DSEKLLPVFEEAAKSFKGKLIFV------------YVQMDNEDVGKPVS 372
+ LL A + D EK + + ++ +++ V + + +S
Sbjct: 233 GKDLLIAYYDVDYEKNA----KGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELS 288
Query: 373 EYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFFKSDP 427
+ FG+ GE P V T +K ++ E + D ++ F +D+ +G LK + KS+P
Sbjct: 289 D-FGLESTAGEIPVVAIRTAK--GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEP 345
Query: 428 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487
IPE+NDG VK+VV NFDEIV +E+KDVL+E YAPWCGHC+ EP Y +L + L +I
Sbjct: 346 IPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNI 405
Query: 488 VIAKMDGTTNE 498
VIAKMD T N+
Sbjct: 406 VIAKMDATAND 416
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 88 PEIDDKDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESV 146
PE +D V V+ NF +++ N NK V++EFYAPWCGHC+ +L S + ++
Sbjct: 347 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNI 405
Query: 147 VLAKVDATEENELAHEYDVQGFPTIYFFVDGQH---KAYNGGRTKDAIVTWIKKK 198
V+AK+DAT N++ Y+V+GFPTIYF + K Y GGR +++++++
Sbjct: 406 VIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 459
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 14/313 (4%)
Query: 200 GPGIYNITTLDE---AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNP 256
GPG TTL + AE ++ S V+G+ + ++ A+ DD+ F T+N
Sbjct: 13 GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNS 72
Query: 257 DVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 316
DV + LD + +V+ KK E + F +G+ K + DF+ N+LPLV FT + A
Sbjct: 73 DVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 127
Query: 317 PSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY 374
P +F IK +LLF + D + L F+ AA+SFKGK++F+++ D+ D + + E+
Sbjct: 128 PKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEF 186
Query: 375 FGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETN 432
FG+ E P V T ++ K+ + E LT ++I F FLEGK+KP S +PE
Sbjct: 187 FGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW 246
Query: 433 DGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 491
D VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIAK
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 306
Query: 492 MDGTTNEHHRAKV 504
MD T NE KV
Sbjct: 307 MDSTANEVEAVKV 319
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 91 DDKDVVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLA 149
D + V VL +NF DV + K V VEFYAPWCGHC+ K +E++V+A
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-HENIVIA 305
Query: 150 KVDATEENELAHEYDVQGFPTIYFFVDGQHKA---YNGGRTKDAIVTWIK 196
K+D+T NE+ V FPT+ FF + YNG RT D +++
Sbjct: 306 KMDST-ANEV-EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 202/450 (44%), Gaps = 80/450 (17%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
+D VV L +F++ I+++ V+ EF+APWCGHC+ L N + LA+
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQ 69
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDAIVTWIKKKIGPGIYNIT 207
+D TE +L E+++ GFP++ F + Y G RT +AIV ++ K+ P + +
Sbjct: 70 IDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA 129
Query: 208 TLDEAERVLTSETKVVLGYLNSLVGSESEVLAD--------ASRLEDDVNFYQTTNPD-- 257
L L +ET ++ ++ ++ AD A++ +D +F N D
Sbjct: 130 DL---PAYLANET-----FVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDD 181
Query: 258 VAKIFHLDSKVNRPALVMVKK-------------ETEKISYFADGKFDKSTIADFVFSNK 304
+L S ++ P + KK + E + YF G+ D S A +V S
Sbjct: 182 FKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYF--GEIDGSVFAQYVESG- 238
Query: 305 LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKL---LPVFEEAAKSFKGKLIFVYVQ 361
LPL +F ND E+L P+F E AK +G + FV
Sbjct: 239 LPLGYLFY----------------------NDEEELEEYKPLFTELAKKNRGLMNFV--S 274
Query: 362 MDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI----------LDGELTLDK--IKT 409
+D G+ + + P + +D K + L ++ L+ I++
Sbjct: 275 IDARKFGRHAGN-LNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIES 333
Query: 410 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA 469
+DFL+G P KS I E D V +VG N DEIV D KDVL+ YAPWCGHC+
Sbjct: 334 LVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKR 393
Query: 470 FEPTYNKLA-KHLRGVDSIVIAKMDGTTNE 498
PTY +LA + ++IAK+D T N+
Sbjct: 394 LAPTYQELADTYANATSDVLIAKLDHTEND 423
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 88 PEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVV 147
PE +D V+VL++ NF++ + +K+++VEFYAPWCGHC+ +LK+ +
Sbjct: 3 PEEEDH-VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIR 61
Query: 148 LAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDAIVTWIKKKIGPG 202
LAKVDATEE++LA +Y V+G+PTI FF +G K Y GR D IV W+KK+ GP
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 429 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-I 487
PE D V ++ +NF E L K +L+E YAPWCGHC+A P Y K A L+ S I
Sbjct: 3 PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 488 VIAKMDGT 495
+AK+D T
Sbjct: 61 RLAKVDAT 68
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 63/84 (75%)
Query: 415 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY 474
+G LK + KS+PIPE+NDG VK+VV NFDEIV +E+KDVL+E YAPWCGHC+ EP Y
Sbjct: 8 FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
Query: 475 NKLAKHLRGVDSIVIAKMDGTTNE 498
+L + L +IVIAKMD T N+
Sbjct: 68 KELGEKLSKDPNIVIAKMDATAND 91
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 88 PEIDDKDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESV 146
PE +D V V+ NF +++ N NK V++EFYAPWCGHC+ +L S + ++
Sbjct: 22 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNI 80
Query: 147 VLAKVDATEENELAHEYDVQGFPTIYFFVDGQH---KAYNGGRTKDAIVTWIKKKIGPG 202
V+AK+DAT N++ Y+V+GFPTIYF + K Y GGR +++++++ G
Sbjct: 81 VIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATSG 138
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 14/234 (5%)
Query: 200 GP-GIYNITTLDE---AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTN 255
GP G TTL + AE ++ S V+G+ + ++ A+ DD+ F T+N
Sbjct: 1 GPLGSPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSN 60
Query: 256 PDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN 315
DV + LD + +V+ KK E + F +G+ K + DF+ N+LPLV FT +
Sbjct: 61 SDVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQT 115
Query: 316 APSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 373
AP +F IK +LLF +D + L F+ AA+SFKGK++F+++ D+ D + + E
Sbjct: 116 APKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILE 174
Query: 374 YFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKS 425
+FG+ E P V T ++ K+ + ELT ++I F FLEGK+KP S
Sbjct: 175 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 228
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+ L + NF DV+ N ++VEFYAPWCGHC+ EL + + LAKVDAT
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPG 202
E+ +LA +DV G+PT+ F G+ YNG R K IV ++ ++ G G
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYMIEQSGSG 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT 495
+NFD++V + + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T
Sbjct: 15 DNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+VL + NF +V+ + ++VEFYAPWCGHC+ EL + + LAKVDAT
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 156 ENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
E +LA +DV G+PT+ F G+ YNG R K IV ++ ++ G
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSG 237
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+VL + NF + + + V++EFYAPWCGHC+ LK + + +AK+DAT
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAER 214
+ LA +DV G+PTI GQ Y G RT++ IV +++ P + T E
Sbjct: 77 SASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQP---DWTPPPEVTL 133
Query: 215 VLTSE 219
VLT E
Sbjct: 134 VLTKE 138
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTT 496
NFD V D+ VLLE YAPWCGHC+ F P Y K+A L+ D I +AK+D T+
Sbjct: 24 NFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS 77
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 438 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGTT 496
++ NFDE+V D + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T
Sbjct: 134 VLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 491
+ G VK+VVG FD IV+D KDVL+E YAPWCGHC+ EP Y L K +G +VIAK
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 492 MDGTTNE 498
MD T N+
Sbjct: 65 MDATAND 71
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V++ K V++EFYAPWCGHC+ + K + +V+AK+DAT + +Y V
Sbjct: 21 VMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK-GQKDLVIAKMDATANDITNDQYKV 79
Query: 166 QGFPTIYFFVDGQHK 180
+GFPTIYF G K
Sbjct: 80 EGFPTIYFAPSGDKK 94
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V VL + NF + + + V++EFYAPWCGHC+ + LK + + +AK+DAT
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGP 201
+ LA ++DV G+PTI GQ Y+G RT++ IV +++ P
Sbjct: 79 SASMLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQP 125
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDG 494
V ++ NFD V D+ VLLE YAPWCGHC+ F P Y K+A L+ D I +AK+D
Sbjct: 19 VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 495 TTNEHHRAKVIFDVN 509
T+ +K FDV+
Sbjct: 78 TSASMLASK--FDVS 90
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 94 DVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DV+ L + NF I + ++VEF+APWCGHC+ T LK V LAK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI---VPLAK 58
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHK-AYNGGRTKDAIVTWIKKKIGP 201
VD T ++Y V G+PT+ F DG+ AY+G RT D IV+ +KK+ GP
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 435 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 492
DV + +NF+ + D +L+E +APWCGHC+ P Y A L+G+ + +AK+
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 493 DGTTN 497
D T N
Sbjct: 60 DCTAN 64
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 491
+ G VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIAK
Sbjct: 5 SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 64
Query: 492 MDGTTNEHHRAKV 504
MD T NE KV
Sbjct: 65 MDSTANEVEAVKV 77
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 95 VVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
V VL +NF DV + K V VEFYAPWCGHC+ K +E++V+AK+D+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-HENIVIAKMDS 67
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKA---YNGGRTKDAI 191
T NE+ V FPT+ FF + YNG RT D
Sbjct: 68 T-ANEV-EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF 106
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 303 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYV 360
N+LPLV FT + AP +F IK +LLF +D + L F+ AA+SFKGK++F ++
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 361 QMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 418
D+ D + + E+FG+ E P V T ++ K+ + ELT ++I F FLEGK
Sbjct: 71 DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 419 LKPFFKSDPIPETND 433
+KP S +PE D
Sbjct: 130 IKPHLMSQELPEDWD 144
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 94 DVVVLKERNFS-DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANES-VVLAKV 151
DV+ L + +F +V+++ MVEFYAPWCGHC+ +E+K + V LA V
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVT 193
DAT LA Y ++GFPTI F G+ Y+GGRT+ IV+
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVI 489
+ GDV + ++FD+ VLD ++E YAPWCGHC+ EP + A ++ + +
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKL 64
Query: 490 AKMDGTTNE 498
A +D T N+
Sbjct: 65 AAVDATVNQ 73
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 429 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 485
P ++G V +VV N++EIVLD++KDVL+E YAPWCGHC+A P Y +L D
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 486 SIVIAKMDGTTNE 498
+VIAK+D T N+
Sbjct: 62 RVVIAKVDATAND 74
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 95 VVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSA--NESVVLAKV 151
V V+ +N+++ V+++ K V++EFYAPWCGHC+ + + VV+AKV
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 152 DATEENELAHEYDVQGFPTIYFF---VDGQHKAYNGGRTKDAIVTWI 195
DAT N++ E +QGFPTI + GQ Y+G RT + ++ +I
Sbjct: 69 DAT-ANDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 94 DVVVLKERNFS-DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
DV+ L NF+ +VI+++ +VEFYAPWCGHCQ T LK + V + V+
Sbjct: 18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK---DVVKVGAVN 74
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQHKA--YNGGRTKDAIV 192
A + L +Y VQGFPTI F ++K Y GGRT +AIV
Sbjct: 75 ADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 431 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 484
++ DV + +NF+ V+ L+E YAPWCGHCQ P + K A L+ V
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 67
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 2 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAI 191
E + +Y V+G+PT+ F G+ + ++GGR D++
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 98
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGT 495
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T
Sbjct: 8 NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 7 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 65
Query: 155 EENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E + +Y V+G+PT+ F G+ ++GGR D++
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 103
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH 499
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T +
Sbjct: 13 NNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN 69
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 9 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 67
Query: 155 EENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E + +Y V+G+PT+ F G+ ++GGR D++
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 105
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIA 490
+ G V + NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA
Sbjct: 5 SSGTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 491 KMDGTTNEH 499
++D T +
Sbjct: 63 EVDCTAERN 71
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 141/351 (40%), Gaps = 29/351 (8%)
Query: 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKS--ANES-VVLAK 150
++ L N +++ N +V FYA WC Q +K NE+ VV A+
Sbjct: 6 EITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQH--KAYNGGRTKDAIVTWIKKKIGPGIYNITT 208
VD + +++A Y + +PT+ F +G + Y G R+ A+ +I+++ I I
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRD 125
Query: 209 LDEAERVLTSETKVVLGYLNSLVGSESEVLAD-ASRLEDDVNFYQTTNPDVAKI--FHLD 265
L E L + ++GY V A+ L DD F DV+K + D
Sbjct: 126 LAEIT-TLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFG-DVSKPERYSGD 183
Query: 266 SKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIK 325
+ + +P + + A FD +++ +PLV T EN + E +
Sbjct: 184 NIIYKPP---GHSAPDXVYLGAXTNFD--VTYNWIQDKCVPLVREITFENGEELTEEGLP 238
Query: 326 NQLLLFAVSNDSEKLLPVFEEAAKSF---KGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 382
L+LF D+E L E A+ KG + F++ D P+ + P
Sbjct: 239 F-LILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDK--FRHPLLHIQKTPADCP 295
Query: 383 KVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIP 429
V+A D + + G+ L K+K F D GKL F P P
Sbjct: 296 -VIAI---DSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDP 342
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANE-----SVVL 148
+V V+ + N+ +++E + M+EFYAPWC CQ E +S E V +
Sbjct: 8 NVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQ-------PEWESFAEWGEDLEVNI 58
Query: 149 AKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198
AKVD TE+ L+ + + PTIY DG+ + Y G RTK + +I K
Sbjct: 59 AKVDVTEQPGLSGRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDK 108
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 491
+ G+V+++ N+ E++ D ++E YAPWC CQ +P + A+ ++ + IAK
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIAK 60
Query: 492 MDGT 495
+D T
Sbjct: 61 VDVT 64
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 20/150 (13%)
Query: 92 DKDVVVLKERNFSDVIENNKFV-MVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
D + L ++F I N + +VEFYAPWCGHC+ L + V
Sbjct: 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ-VAAVN 74
Query: 151 VDATEENELAHEYDVQGFPTIYFF----------VDGQHKA--------YNGGRTKDAIV 192
D + L +YDV GFPT+ F +D K+ Y+G RT IV
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134
Query: 193 TWIKKKIGPGIYNITTLDEAERVLTSETKV 222
+ +I + +D +L K+
Sbjct: 135 DFSLSRIRSYVKKFVRIDTLGSLLRKSPKL 164
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 422 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 481
F+ SDP + + +FD+ + + + L+E YAPWCGHC+ T+ K AK L
Sbjct: 12 FYDSDP-------HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Query: 482 RGVDSIVIAKMDGTTNEHHRAKVIFDVN 509
GV + D N+ AK +DVN
Sbjct: 65 DGVVQVAAVNCDLNKNKALCAK--YDVN 90
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG C+ TE + + +AK+D E A +
Sbjct: 19 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 75
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 76 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 105
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTN 68
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+VL E NF +VI NNK V+V+ +A WC C + K V +++ E
Sbjct: 7 LVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRLNVDE 63
Query: 156 ENELAHEYDVQGFPTIYFFVDGQ 178
++A +Y V PT FV+GQ
Sbjct: 64 NQKIADKYSVLNIPTTLIFVNGQ 86
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 435 DVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
DV +V+ NFDE++ + +K VL++ +A WC C +EP Y K+A+ +G
Sbjct: 4 DVTLVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG 52
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEEN 157
L +NF + I NK V+V+F+A WC C EL + V K++ E
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPC----LILAPVIEELANDYPQVAFGKLNTEESQ 66
Query: 158 ELAHEYDVQGFPTIYFFVDGQ 178
++A Y + PTI FF +G+
Sbjct: 67 DIAMRYGIMSLPTIMFFKNGE 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DD +++ L+ R F + + + V FY+P C HC E+ + +
Sbjct: 95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGA 151
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVTWIKKKIGPGIYNITT 208
V+ ++ L V +P+++ F G YNG R+K+++V + + + + ++T
Sbjct: 152 VNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST 210
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGV---------DSIVIAKMDGTTN 497
+ Y+P C HC PT+ + AK + G+ D ++ +M G +
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNS 168
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG + TE + + +AK+D E A +
Sbjct: 21 TDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 77
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 78 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 107
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V +F VL +K VL++ +A WCG + P ++A R D + +AK+D TN
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATE-RATD-LTVAKLDVDTN 70
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 292 DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAK 349
D + ++ F+ N L +VT + +F S I+ LLL S + E+ + +++AAK
Sbjct: 99 DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK 158
Query: 350 SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 409
F+GK++F+ V ++ GK +S + + P + Y DD + E++++ ++
Sbjct: 159 LFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQN 218
Query: 410 FGEDFLEGK 418
F + FL GK
Sbjct: 219 FCDGFLSGK 227
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG C+ TE + + +AK+D E A +
Sbjct: 24 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 80
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 81 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 110
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTN 73
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+++FYA WCG C+ EL + VV KVD E ++A + + P
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLE----ELSQSMSDVVFLKVDVDECEDIAQDNQIACMP 75
Query: 170 TIYFFVDGQHKAYNGGRTKDAIVTWIKK 197
T F +GQ G D ++ ++K
Sbjct: 76 TFLFMKNGQKLDSLSGANYDKLLELVEK 103
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 484
+K V+++ YA WCG C+ P +L++ + V
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDV 52
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG C+ E + + K++ E +A +Y++
Sbjct: 13 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 69
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 70 RSIPTVLFFKNGERK 84
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+++ E VL+ V+++ +APWCG C+ P ++LAK G
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG 48
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG C+ E + + K++ E +A +Y++
Sbjct: 14 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 70
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 71 RSIPTVLFFKNGERK 85
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+V+ V +++ E VL+ V+++ +APWCG C+ P ++LAK G
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG 49
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEY 163
V+ + VEF+A WCGHC ++K+ ++ LA +D EE + + ++
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 164 DVQGFPTIYFF 174
++ GFPT+ FF
Sbjct: 86 NIPGFPTVRFF 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKVIF 506
VL +E +A WCGHC AF PT+ LA+ ++ ++ +A +D E + V
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALD--CAEETNSAVCR 83
Query: 507 DVNL 510
D N+
Sbjct: 84 DFNI 87
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K V+++F+A WCG C+ T+ ++VV+ KVD E ++A EY++
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSM 75
Query: 169 PTIYFFVDG----QHKAYNGGRTKDAI 191
PT F +G + N R +D I
Sbjct: 76 PTFVFLKNGVKVEEFAGANAKRLEDVI 102
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
K V+L+ +A WCG C+ P +L+ D++V+ K+D
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVD 59
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K V+++F+A WCG C+ T+ ++VV+ KVD E ++A EY++
Sbjct: 24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSM 80
Query: 169 PTIYFFVDG----QHKAYNGGRTKDAI 191
PT F +G + N R +D I
Sbjct: 81 PTFVFLKNGVKVEEFAGANAKRLEDVI 107
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
K V+L+ +A WCG C+ P +L+ D++V+ K+D
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVD 64
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 100 ERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENEL 159
++NF + + + V+V+F+A WC C+ E + +++AK+D E +
Sbjct: 9 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKT 65
Query: 160 AHEYDVQGFPTIYFFVDGQ 178
A Y V PT+ F DGQ
Sbjct: 66 AXRYRVXSIPTVILFKDGQ 84
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDEN 62
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 100 ERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENEL 159
++NF + + + V+V+F+A WC C+ E + +++AK+D E +
Sbjct: 8 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKT 64
Query: 160 AHEYDVQGFPTIYFFVDGQ 178
A Y V PT+ F DGQ
Sbjct: 65 AXRYRVXSIPTVILFKDGQ 83
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDEN 61
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K +V+FYA WCG C+ E + + KV+ +E ELA ++ +QG
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGI 106
Query: 169 PTIYFF-VDGQHKAYNGGRTKDAIVTWIKK 197
PTI+F + G+ + G +K+ + +I K
Sbjct: 107 PTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
K +++ YA WCG C+ P +L+K G
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG 82
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E K V+++F A WCG C+ + A V KVD E E+A +Y+V+
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA----VFLKVDVDELKEVAEKYNVEA 89
Query: 168 FPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
PT F DG G KD + I K +G
Sbjct: 90 MPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 122
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+ K V+++ A WCG C+ P + + AK G
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG 67
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
V+ F V +K V+++F+A WCG C+ A + V KVD E
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISD--TPAGDKVGFYKVDVDE 76
Query: 156 ENELAHEYDVQGFPTIYFFVDGQ 178
++++A E ++ PT FF +GQ
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQ 99
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
G V+++ + + V K V+++ +A WCG C+ P + K++ G D + K+D
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCGHC+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCGHC+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F ++I+ N ++++FYA WCG C+ T+L A V K D E ++A E
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCK----MMQPHLTKLIQAYPDVRFVKCDVDESPDIAKE 78
Query: 163 YDVQGFPTIYFFVDGQ 178
+V PT DGQ
Sbjct: 79 CEVTAMPTFVLGKDGQ 94
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 479
++ ++ ++++ YA WCG C+ +P KL +
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ 57
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 102 NFSDVIENNKF-VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELA 160
+F D + N++ V+V+F+A WCG C+ + + VV+AKVD + +LA
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKM---VAKQHGKVVMAKVDIDDHTDLA 78
Query: 161 HEYDVQGFPTIYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIG 200
EY+V PT+ +G + G + +D + ++KK IG
Sbjct: 79 IEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
G +F + V++ V+++ +A WCG C+ P K+ G +V+AK+D
Sbjct: 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVD 70
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E++ V+V+F+APWCG C+ E K + V K++ E +A EY +
Sbjct: 15 VLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDESPNVASEYGI 71
Query: 166 QGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKK 197
+ PTI F G+ + G K IV ++K
Sbjct: 72 RSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 482
+ F +VL+ S VL++ +APWCG C+ P +++A +
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK 49
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
++V+F+APWCG C+ L V LAK+D +A + +QG P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG---QVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 173 FFVDGQHKAY-NGGRTKDAIVTWIKKKIG 200
F G+ A G R +V +++ K+G
Sbjct: 124 LFHKGRELARAAGARPASELVGFVRGKLG 152
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
+L++ +APWCG C+ P + A L G + +AK+D
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKID 103
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DD +++ L+ R F + + + V FY+P H E+ + +
Sbjct: 114 DDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGA 170
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVTWIKKKIGPGIYNITTL 209
V+ ++ L V +P+++ F G YNG R+K+++V + + + + ++T
Sbjct: 171 VNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTG 230
Query: 210 DEAERVLTSETKVVLGYLNSLVGSESEVLADASRLE 245
+ + T+ V G+L + + L +RL
Sbjct: 231 NFVNAIETAFAAGV-GWLITFCSKGEDCLTSQTRLR 265
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 89 EIDDKDVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANES 145
++ + VV L F+++++ K MV+FY+PW Q L
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL--- 595
Query: 146 VVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYN----GGRTKDA--IVTWIKKKI 199
+ + VD + + + +VQ +P I F+ KAY G +DA + +W +
Sbjct: 596 INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL 655
Query: 200 GPGIYNITTLDEAERVLTSETKVVLGYLNSLVG 232
++T E+VL +T V+ + G
Sbjct: 656 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSG 688
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
F+E VL +++ YAPW G Q F P + LA+ ++G
Sbjct: 667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG 706
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 114 MVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173
+V+F+APW + T L + + +D T L + Y++Q +PT
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYG---QLKVGTLDCTIHEGLCNMYNIQAYPTTVV 515
Query: 174 FVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNIT 207
F Y G + + I+ +I+ P + ++T
Sbjct: 516 FNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLT 549
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG + E + + K++ E +A +Y++
Sbjct: 14 VLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 70
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 71 RSIPTVLFFKNGERK 85
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+V+ V +++ E VL+ V+++ +APWCG + P ++LAK G
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSG 49
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 105 DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYD 164
DV++N+K V+V+F+A WCG C+ E + + + K++ E A +Y
Sbjct: 18 DVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY---GDKIEIVKLNIDENPGTAAKYG 74
Query: 165 VQGFPTIYFFVDGQ-HKAYNGGRTKDAIV 192
V PT+ + G+ K G + K AIV
Sbjct: 75 VMSIPTLNVYQGGEVAKTIVGAKPKAAIV 103
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
G +K V ++F++ VL K VL++ +A WCG C+ P+ +A D I I K++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLN 62
Query: 494 GTTNEHHRAK 503
N AK
Sbjct: 63 IDENPGTAAK 72
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K +V+FYA WCG C+ E + + KV+ +E ELA ++ +Q
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSI 106
Query: 169 PTIYFF-VDGQHKAYNGGRTKDAIVTWIKK 197
PTI+F + G+ + G +K+ + +I K
Sbjct: 107 PTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
K +++ YA WCG C+ P +L+K G
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG 82
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ +K V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGE 82
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDEN 60
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ +K V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGR 82
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDEN 60
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L E +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L +NF + +++ +V+F+A WC C EL V K+++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPC----LILAPIIEELAEDYPQVGFGKLNSD 56
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E ++A Y V PT+ FF DG+
Sbjct: 57 ENPDIAARYGVMSLPTVIFFKDGE 80
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
V+ + + NF +V++++K V+V+F+APWCG C+ EL E V
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIE----ELAKEYEGKVKVVKVN 58
Query: 154 TEEN-ELAHEYDVQGFPTIYFFVDGQ 178
+EN A +Y ++ PT+ F +GQ
Sbjct: 59 VDENPNTAAQYGIRSIPTLLLFKNGQ 84
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V NF++ VL K VL++ +APWCG C+ P +LAK G +V +D N
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN 64
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG C+ + A+ K+D E ++A +
Sbjct: 11 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 66
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 67 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 95
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 485
+ FD + + K V+++ YA WCG C+ P K ++ D
Sbjct: 8 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD 51
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG C+ + A+ K+D E ++A +
Sbjct: 17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 72
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 73 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 485
+ FD + + K V+++ YA WCG C+ P K ++ D
Sbjct: 14 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD 57
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEY 163
V+ ++ VEF+A WCGH ++K ++ LA +D EE + + E+
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 164 DVQGFPTIYFF 174
++ GFPT+ FF
Sbjct: 86 NIAGFPTVRFF 96
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
VL S +E +A WCGH AF PT+ +LA
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELA 56
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E +K +V+FYA WCG C+ E + +V+ KVD +E ELA + ++
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEY---DGQIVIYKVDTEKEQELAGAFGIRS 92
Query: 168 FPTIYFF-VDGQHKAYNGGRTK 188
P+I F ++G+ + G K
Sbjct: 93 IPSILFIPMEGKPEMAQGAMPK 114
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501
N +E + K +++ YA WCG C+ P ++LAK G IVI K+D T E
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVD-TEKEQEL 84
Query: 502 A 502
A
Sbjct: 85 A 85
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
+ K V+++F A WCG C+ + A + KVD E ++A Y+V+
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA----IFLKVDVDELKDVAEAYNVEA 81
Query: 168 FPTIYFFVDGQH-KAYNGGRTKDAIVTWIKKKIG 200
PT F DG+ + GGR KD I T I +G
Sbjct: 82 MPTFLFIKDGEKVDSVVGGR-KDDIHTKIVALMG 114
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
D K V+++ A WCG C+ P + + AK G
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG 59
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
+FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 111 KFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPT 170
+ ++V+F+A WCG C+ E+ V AKVD + E A +Y V PT
Sbjct: 20 RLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQNEEAAAKYSVTAMPT 75
Query: 171 IYFFVDGQH 179
F DG+
Sbjct: 76 FVFIKDGKE 84
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 446 EIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
E +++E+K ++++ +A WCG C+ P LAK + V+ AK+D NE AK
Sbjct: 11 EKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE---FAKVDVDQNEEAAAK 67
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2BJX|A Chain A, Protein Disulfide Isomerase
pdb|1BJX|A Chain A, Human Protein Disulfide Isomerase, Nmr, 24 Structures
Length = 110
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 212 AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 271
AE ++ S V+G+ + ++ A+ DD+ F T+N DV + LD +
Sbjct: 11 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 66
Query: 272 ALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 316
+V+ KK E + F +G+ K + DF+ N+LPLV FT + A
Sbjct: 67 GVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 110
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG--KLTVAKLN 59
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P ++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQG--KLTVAKLN 59
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A+ +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQG--KLTVAKLN 59
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG C+ E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
VL + +APWCG C+ P +L + + D + I K+D N+ K
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGK 66
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++F+ VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K ++V+F A WC C+ EL +V KVD E +A E++V+
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIF----AELAKKFPNVTFLKVDVDELKAVAEEWNVEAM 80
Query: 169 PTIYFFVDGQHKAYNGGRTKDAIVTWIKK 197
PT F DG+ G KD + T + K
Sbjct: 81 PTFIFLKDGKLVDKTVGADKDGLPTLVAK 109
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
DK + V + +DV++ + ++V+F+A WCG C+ E + + +AK+
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKL 58
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ + A +Y ++G PT+ F +G+ A G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
V ++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 105 DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYD 164
DV++ + V+V+F+A WCG C+ E V +AKV+ + E + Y
Sbjct: 15 DVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDNPETPNAYQ 71
Query: 165 VQGFPTIYFFVDGQ 178
V+ PT+ DG+
Sbjct: 72 VRSIPTLMLVRDGK 85
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD+ VL S VL++ +A WCG C+ P ++ K G + +AK++
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVN 59
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ + V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGE 82
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
NF + + + VL++ +A WCG C+ P + A+ D + +AK++ N
Sbjct: 9 NFQQAIQGDGP-VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDEN 60
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+V + F +I N+ V+V+F+A WCG C+ E +V KVD E
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYE----ECSKTYTKMVFIKVDVDE 67
Query: 156 ENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIV 192
+E+ + ++ PT K Y G + D ++
Sbjct: 68 VSEVTEKENITSMPT--------FKVYKNGSSVDTLL 96
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 436 VKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 479
VKIV FD I+ +++ V+++ +A WCG C+ P Y + +K
Sbjct: 10 VKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSK 53
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV++ + ++V+F+A WCG C+ E + + +AK++ + A +Y
Sbjct: 24 TDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKY 80
Query: 164 DVQGFPTIYFFVDGQHKAYNGG 185
++G PT+ F +G+ A G
Sbjct: 81 GIRGIPTLLLFKNGEVAATKVG 102
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 69
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ + V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGR 82
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
NF + + + VL++ +A WCG C+ P + A+ D + +AK++ N
Sbjct: 9 NFQQAIQGDGP-VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDEN 60
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
F+E VL +++ YAPWCG CQ F P + LA+ ++G
Sbjct: 13 FNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG 52
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 98 LKERNFSD-VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE 156
L + F++ V++ +V+FYAPWCG CQ +K V KVD
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAY 64
Query: 157 NELAHEYDVQGFPTIYFF 174
+ + ++ +P++ +
Sbjct: 65 PQTCQKAGIKAYPSVKLY 82
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A +Y ++G
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDAQDVAPKYGIRGI 74
Query: 169 PTIYFFVDGQHKAYNGG 185
PT+ F +G+ A G
Sbjct: 75 PTLLLFKNGEVAATKVG 91
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 95 VVVLKER---NFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
++ KER S+ + K V+ F A WCG C+ EL S++ +
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYY----IELSENYPSLMFLVI 83
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH 179
D E ++ + ++++ PT +F DGQ
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQ 111
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 426 DPIPETNDGDVKIVVGN-NFDEIVLDESKD---VLLEIYAPWCGHCQAFEPTYNKLAKHL 481
+P E G+V ++ +D+ + + S+D VL A WCG C+ P Y +L+++
Sbjct: 16 EPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENY 75
Query: 482 RGVDSIVI 489
+ +VI
Sbjct: 76 PSLMFLVI 83
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 29/252 (11%)
Query: 201 PGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES--EVLADASRLEDDVNFYQTTNPDV 258
P I TL + + L VV+ + VG + A+ L +D F+ T + ++
Sbjct: 6 PPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEI 65
Query: 259 AKIFHLDSKVNRPALVMVKKETEKISYF-------ADGKFDKSTIADFVFSNKLPLVTIF 311
AK KV+ LV+ + E + Y G + S I D+V + LPLV
Sbjct: 66 AKFL----KVSLGKLVLXQPEKFQSKYEPRXHVXDVQGSTEASAIKDYVVKHALPLVGHR 121
Query: 312 TRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI--------FVYVQMD 363
N + K L++ S D + A + ++ K++ + + D
Sbjct: 122 KTSNDAKRYS---KRPLVVVYYSVD---FSFDYRTATQFWRNKVLEVAKDFPEYTFAIAD 175
Query: 364 NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPF 422
ED V + G++ V A ++ KK + E D ++ F F +GKLKP
Sbjct: 176 EEDYATEVKD-LGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLKPV 234
Query: 423 FKSDPIPETNDG 434
KS P+P+ N G
Sbjct: 235 IKSQPVPKNNKG 246
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
+++V + E N V+E + V FY W Q + N +LAK+D
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYF-WSERSQHCLQLTPILESLAAQYNGQFILAKLD 65
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E +A ++ ++ PT+Y F +GQ + G + ++AI
Sbjct: 66 CDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI 105
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E V+V+F+A WCG CQ + AN+ V KVD + A Y V
Sbjct: 21 EAPGLVLVDFFATWCGPCQ----RLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSS 76
Query: 168 FPTIYF 173
P ++F
Sbjct: 77 IPALFF 82
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++ PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRSIPTLLLFKNGEVAATKVG 92
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 63
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 63
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASESEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG + + A+ K+D E ++A +
Sbjct: 17 FDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 72
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 73 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKAT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E+ V+V+F A WCG C+ +L + V+ KVD E +A ++ +Q
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDELKSVASDWAIQA 91
Query: 168 FPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
PT F +G+ G KD + + I K +
Sbjct: 92 MPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 450 DESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 484
+ESK V+++ A WCG C+ P + LAK L V
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV 70
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKA 181
+ A +Y ++G PT+ F +G+ A
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAA 88
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 63
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
D +V+ +++++ +++F+APWCG C+ E V KV
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKV 93
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKKKI 199
+ E L+ + ++ PTI + +G+ NG K W+ +++
Sbjct: 94 NTEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQL 142
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 433 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
DG+V D+++ D+ V+ + +APWCG C++F P + + A G
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVI-DFWAPWCGPCRSFAPIFAETAAERAG 86
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
VV E+ F+ + +V+F+APWCG C+ + + VV KV+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARD-HAGRLKVV--KVNVD 91
Query: 155 EENELAHEYDVQGFPTIYFFVDG 177
E LA Y V+ PT+ F G
Sbjct: 92 EHPGLAARYGVRSVPTLVLFRRG 114
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
L++ +APWCG C+ P +LA+ G +V +D
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD 91
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 63
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+ P
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVNDCQDVASECEVKCMP 75
Query: 170 TIYFFVDGQHKAYNGGRTKDAI 191
T FF GQ G K+ +
Sbjct: 76 TFQFFKKGQKVGEFSGANKEKL 97
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
+++V + E N +E + V FY W Q + + +LAK+D
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFYF-WSERSQHCLQLTPVLESLAAQYHGQFILAKLD 65
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKK 197
E +A ++ ++ PT+Y F +GQ + G + ++AI + K
Sbjct: 66 CDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDK 111
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 35.4 bits (80), Expect = 0.068, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P + +A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQG--KLTVAKLNIDQN 63
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASEXEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG + E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
VL + +APWCG + P +L + + D + I K+D N+ K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGK 66
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WC C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WC C+ P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG + E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WCG + P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 201 PGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVA 259
P + T +E ++ ++ + ++G+ + S + SE L AS L D+ F T +
Sbjct: 6 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 260 KIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 316
+ + + + RP+ + K E + ++Y + K I F+ N + T +N
Sbjct: 66 NEYDDNGEGIILFRPSHLTNKFEDKTVAY-TEQKXTSGKIKKFIQENIFGICPHXTEDN- 123
Query: 317 PSVFESPIKNQLLLFAVSN-DSEKLLP--------VFEEAAKSFKGKLIFVYVQMDNEDV 367
+ I+ + LL A + D EK V A K + +
Sbjct: 124 ----KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTF 179
Query: 368 GKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPF 422
+S+ FG+ GE P V T +K + E + D ++ F +D+ +G LK +
Sbjct: 180 SHELSD-FGLESTAGEIPVVAIRTAK--GEKFVXQEEFSRDGKALERFLQDYFDGNLKRY 236
Query: 423 FKSDPIPETNDG 434
KS+PIPE+NDG
Sbjct: 237 LKSEPIPESNDG 248
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG + E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
VL + +APWCG + P +L + + D + I K+D N+ K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGK 66
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +D+++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y +G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYIERGIPTLLLFKNGEVAATKVG 92
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501
++FD ++ +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTA 67
Query: 502 AKVI 505
K I
Sbjct: 68 PKYI 71
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
K V+++F A WCG C+ + +A V KVD E +A ++ V+ P
Sbjct: 34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA----VFLKVDVDELKPIAEQFSVEAMP 89
Query: 170 TIYFFVDGQHKAYNGGRTKD 189
T F +G K G K+
Sbjct: 90 TFLFMKEGDVKDRVVGAIKE 109
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAK 479
K V+++ A WCG C+ P + LAK
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAK 61
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 61
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 62 DQNPGTAPKYGIRGTPTLLLFKNGEVAATKVG 93
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 64
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 5 IVKVTDADFDSKVESG-VQLVDFWATWCGSCKMIAPVLEELAADYEGKAD---ILKLDVD 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 8 VTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDENP 63
Query: 499 HHRAK 503
AK
Sbjct: 64 STAAK 68
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGDVAATKVG 92
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 63
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGTCKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 499 HHRAK 503
AK
Sbjct: 65 STAAK 69
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+V+F+A WCG C+ EL S + KVD + E A +Y++ P
Sbjct: 24 NKLVVVDFFATWCGPCK----TIAPLFKEL-SEKYDAIFVKVDVDKLEETARKYNISAMP 78
Query: 170 TIYFFVDGQ 178
T +G+
Sbjct: 79 TFIAIKNGE 87
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
++K V+++ +A WCG C+ P + +L+
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELS 50
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGPCKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 499 HHRAK 503
AK
Sbjct: 65 STAAK 69
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 90 IDDKDVVVLKERNFSDVIENNKF-VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL 148
++ ++ ++ +S +E++K V+V FY+P C +C+ E S S V
Sbjct: 3 LNGSSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGS---SAVF 59
Query: 149 AKVDATEENELAHEYDVQGFPTIYFFVDGQ 178
+++ A +Y VQG PT FF G+
Sbjct: 60 GRINIATNPWTAEKYGVQGTPTFKFFCHGR 89
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
V D K V++ Y+P C +C+A EP + + AK S V +++ TN
Sbjct: 20 VEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATN 67
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+V+F+A WCG C+ EL S + KVD + E A +Y++ P
Sbjct: 33 NKLVVVDFFATWCGPCKTIAPLFK----EL-SEKYDAIFVKVDVDKLEETARKYNISAMP 87
Query: 170 TIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199
T +G+ G + + IKK I
Sbjct: 88 TFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 425 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 479
S+ I DGD++ ++ + ++K V+++ +A WCG C+ P + +L++
Sbjct: 13 SELIELKQDGDLESLLEQH-------KNKLVVVDFFATWCGPCKTIAPLFKELSE 60
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ + + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQG--KLTVAKLNIDQN 63
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG C+ + A K+D E +++A +
Sbjct: 20 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 75
Query: 164 DVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F+ G+ G AI
Sbjct: 76 EVSSMPTLIFYKGGKEVTRVVGANPAAI 103
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480
+ +D + K V+++ +A WCG C+ P K A+
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ 54
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG C+ + A K+D E +++A +
Sbjct: 13 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 68
Query: 164 DVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F+ G+ G AI
Sbjct: 69 EVSSMPTLIFYKGGKEVTRVVGANPAAI 96
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480
+ +D + K V+++ +A WCG C+ P K A+
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ 47
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 401 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 434
E+T + IK F +DF+ GK++P KS+PIPE +G
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 95 VVVLKER---NFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
++ KER S+ + K V+ F A WCG + EL S++ +
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYY----IELSENYPSLMFLVI 83
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH 179
D E ++ + ++++ PT +F DGQ
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQ 111
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDSQDVASESEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WC + E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
++FD VL +L++ +A WC + P +++A +G + +AK++
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG--KLTVAKLN 59
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG + E + + +AK++
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG---KLTVAKLNI 80
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 81 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 112
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 428 IPETNDGDVKI-VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 486
+P + D I + ++FD VL +L++ +A WCG + P +++A +G
Sbjct: 15 VPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--K 72
Query: 487 IVIAKMDGTTN 497
+ +AK++ N
Sbjct: 73 LTVAKLNIDQN 83
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKAT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGH-CQXXXXXXXXXXTELKSANESVVLAKVD 152
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQG---KLTVAKLN 60
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 442 NNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497
++FD VL +L++ +A WCG C+ P +++A +G + +AK++ N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQG--KLTVAKLNIDQN 64
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC C+ K+ ++V+L A V A
Sbjct: 13 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 72
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 73 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 106
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 27/85 (31%)
Query: 447 IVLDESKDVLLEIYAPWCGHCQAFE------PTYNK---------------------LAK 479
+V + K V+L++YA WC C+ FE P K L K
Sbjct: 23 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 82
Query: 480 HLRGVDSIVIAKMDGTTNEHHRAKV 504
HL + I DG EH +A+V
Sbjct: 83 HLNVLGLPTILFFDGQGQEHPQARV 107
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC C+ K+ ++V+L A V A
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 76 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 109
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 27/85 (31%)
Query: 447 IVLDESKDVLLEIYAPWCGHCQAFE------PTYNK---------------------LAK 479
+V + K V+L++YA WC C+ FE P K L K
Sbjct: 26 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 480 HLRGVDSIVIAKMDGTTNEHHRAKV 504
HL + I DG EH +A+V
Sbjct: 86 HLNVLGLPTILFFDGQGQEHPQARV 110
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSM 85
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 86 PTFQFFKKGQKVGEFSGANKEKL 108
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKRM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 107 IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQ 166
++ ++V F+APW C EL V K++A E++ +Y++
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKLEAEGVPEVSEKYEIS 84
Query: 167 GFPTIYFFVDGQ 178
PT FF + Q
Sbjct: 85 SVPTFLFFKNSQ 96
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAK 73
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENE-LAHEYDVQG 167
+K V+++ + WCG C+ +L V+ K+D +EN+ LA E ++
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYE----KLAEEYLDVIFLKLDCNQENKTLAKELGIRV 79
Query: 168 FPT 170
PT
Sbjct: 80 VPT 82
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAK 85
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENE-LAHEYDVQG 167
+K V+++ + WCG C+ +L V+ K+D +EN+ LA E ++
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYE----KLAEEYLDVIFLKLDCNQENKTLAKELGIRV 91
Query: 168 FPT 170
PT
Sbjct: 92 VPT 94
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXX--XTELKSANESVVLAKVDATEENELAHEYDVQ 166
+ + VMV F++ C +CQ + L A V VD E ELA Y V
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77
Query: 167 GFPTIYFFV 175
G PT F V
Sbjct: 78 GTPTFVFLV 86
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG + + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGTSKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498
V +FD V ES L++ +A WCG + P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 499 HHRAK 503
AK
Sbjct: 65 STAAK 69
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
K V+++F A WCG + + +A V KVD E +A ++ V+ P
Sbjct: 37 KKLVVIDFTASWCGPSRIMAPVFADLAKKFPNA----VFLKVDVDELKPIAEQFSVEAMP 92
Query: 170 TIYFFVDGQHKAYNGGRTKD 189
T F +G K G K+
Sbjct: 93 TFLFMKEGDVKDRVVGAIKE 112
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKS--------ANE- 144
++ L + +F +DV++ + ++V+F+A WCG + K A+E
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 145 --SVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ +AK++ + A +Y ++G PT+ F +G+ A G
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 107
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG + + A K+D E +++A +
Sbjct: 21 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 76
Query: 164 DVQGFPTIYFFVDGQH 179
+V PT+ F+ G+
Sbjct: 77 EVSSMPTLIFYKGGKE 92
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG + + A K+D E +++A +
Sbjct: 13 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 68
Query: 164 DVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F+ G+ G AI
Sbjct: 69 EVSSMPTLIFYKGGKEVTRVVGANPAAI 96
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
+++ F WC C+ ++++ + A +DA + + E +++ P++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG---DIRFAYMDAEDAEKTMAELNIRTLPSLA 76
Query: 173 FFVDGQ-HKAYNGGRTKDAIVTWIKKKI 199
FVDG + ++G K + WI I
Sbjct: 77 LFVDGMIREVFSGTMNKSDLRYWINNNI 104
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 338 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 373
+K+ P FEE A +G + F Y MD ED K ++E
Sbjct: 33 KKMKPTFEEMASQMEGDIRFAY--MDAEDAEKTMAE 66
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKV 504
+++ WC C+ +PT+ ++A + G I A MD E A++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG--DIRFAYMDAEDAEKTMAEL 67
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 107 IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQ 166
++ ++V F+APW C EL V K++A E++ +Y++
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKLEAEGVPEVSEKYEIS 90
Query: 167 GFPTIYFFVDGQ 178
PT FF + Q
Sbjct: 91 SVPTFLFFKNSQ 102
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDXQDVASEXEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A CG C+ + + + + K+D
Sbjct: 5 IVKVTDADFDSKVESG-VQLVDFWATACGPCKMIAPVLEELAADYEGKAD---ILKLDVD 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 94 DVVVLKERNFSDVIEN----NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLA 149
D + +E +F + ++ +K + V+ + WCG C+ N V
Sbjct: 7 DGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL 66
Query: 150 KVDA--TEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
K+D E EL +Y V +PT+ F Y +DA K K+G
Sbjct: 67 KMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 93 KDVVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
K V+ + + F S+V++ + V+V F+A WCG CQ + ++ + + K+
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA---NTYSDRLKVVKL 63
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH--KAYNGGRTKDAIVTWI 195
+ +Y V+G P + V G+ + G +KD +++++
Sbjct: 64 EIDPNPTTVKKYKVEGVPALR-LVKGEQILDSTEGVISKDKLLSFL 108
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
F+ VL + VL+ +A WCG CQ P N A
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA 51
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELK-SANESVVLAKVDATEENELAHEYD 164
+ + K +V F C CQ EL+ + ES VD EE L +
Sbjct: 18 IYDEGKACLVXFSRKNCHVCQKVTPVLE----ELRLNYEESFGFYYVDVEEEKTLFQRFS 73
Query: 165 VQGFPTIYFFVDGQHKAYNGGRTKD 189
++G P I +F DG++K G +D
Sbjct: 74 LKGVPQILYFKDGEYKGKXAGDVED 98
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 432 NDGD----VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGV 484
NDG+ V + FD IV+D KDV + Y PW H A ++ L+ R
Sbjct: 9 NDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNH 68
Query: 485 DSIVIAKMDG 494
+ V A++DG
Sbjct: 69 LTFVAARIDG 78
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXX--XXXXXXTELKSANESVVLAKV 151
VV L + F S V++ K V V +Y PW H K + + V A++
Sbjct: 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARI 76
Query: 152 DATEENELAHEYDVQGFPTIYFF--VDGQHK-AYNGGR 186
D + ++ V GFPT+ ++ +D Q Y+G R
Sbjct: 77 DGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQR 114
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC + K+ ++V+L A V A
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTA 75
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 76 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 109
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 100 ERNFSDVIE----NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
++N S++I N +++ F+A WC C K + + L KVD +
Sbjct: 28 QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQ---KYYGKRIYLLKVDLDK 84
Query: 156 ENELAHEYDVQGFPTI 171
LA ++ V+ PTI
Sbjct: 85 NESLARKFSVKSLPTI 100
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A W G + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWSGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1G7E|A Chain A, Nmr Structure Of N-Domain Of Erp29 Protein
Length = 122
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPW-CGHCQXXXXXXXXXXTELKSANESVVLAKV 151
K + L F VI +KFV+V+F + G Q E ++++ +++A+V
Sbjct: 4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ----DEFKRLAENSASSDDLLVAEV 59
Query: 152 DATEEN-----ELAHEY--DVQGFPTIYFFVDGQHK---AYNGGRTKDAIVTWIKKKIGP 201
++ EL+ +Y D + +P Y F DG + Y+G AI W+K G
Sbjct: 60 GISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLK---GQ 116
Query: 202 GIY 204
G+Y
Sbjct: 117 GVY 119
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503
K V+L+++ WCG +A P Y KLA+ V + K+D AK
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV---IFLKLDCNQENKTLAK 72
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 90 IDDKDVVVLKERNFSDVIENNKFVMVEFYAPW-CGHCQXXXXXXXXXXTELKSANESVVL 148
+ K + L F VI +KFV+V+F + G Q E ++++ +++
Sbjct: 2 VHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ----DEFKRLAENSASSDDLLV 57
Query: 149 AKVDATEEN-----ELAHEY--DVQGFPTIYFFVDGQHK---AYNGGRTKDAIVTWIKKK 198
A+V ++ EL+ +Y D + +P Y F DG + Y G AI W+K
Sbjct: 58 AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLK-- 115
Query: 199 IGPGIY 204
G G+Y
Sbjct: 116 -GQGVY 120
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 96
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V V F +++ + + F A WCG C+ E +V AKVDA
Sbjct: 22 VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDAD 77
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
+E+ + V PT G+
Sbjct: 78 NNSEIVSKCRVLQLPTFIIARSGK 101
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 92 DKDVVVLKERNFSDVIENNKFV--MVEFYAPWCGHCQXXXXXXXXXXTELK-----SANE 144
D VV L +FS V +V FY CG C+ LK A +
Sbjct: 22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQ 81
Query: 145 SVVLAKVDATEENELAHEYDVQGFPTIYFF 174
A V+ E +L +YD+ P ++FF
Sbjct: 82 IATAAAVNCASEVDLCRKYDINFVPRLFFF 111
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 490
K VL+ +A WC +C+ P+ ++L K D +V+A
Sbjct: 42 KIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
VL + K VLL ++A WC C+A N+L+
Sbjct: 8 VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 38
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLA-KVDATEENELAHEYDVQGFPTIYFFV 175
F P C +C E A + +L V+A E E A +Y+V P I V
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV 200
Query: 176 DGQHK 180
+G+ K
Sbjct: 201 NGEDK 205
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLA-KVDATEENELAHEYDVQGFPTIYFFV 175
F P C +C E A + +L V+A E E A +Y+V P I V
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV 200
Query: 176 DGQHK 180
+G+ +
Sbjct: 201 NGEDR 205
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 409 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 468
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 5 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 39
Query: 469 AFEPTYNKLAKHL 481
F+P KL K L
Sbjct: 40 HFDPLLLKLGKAL 52
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 409 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 468
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 4 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 38
Query: 469 AFEPTYNKLAKHL 481
F+P KL K L
Sbjct: 39 HFDPLLLKLGKAL 51
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 426 DP-IPETNDGDVKIVVGNNFD-EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
DP +P K + G++F E +L K +L +APWC CQ P ++A
Sbjct: 13 DPTVPAQLQFSAKTLDGHDFHGESLL--GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE 70
Query: 484 VDSIVIAKMD 493
V + +A +D
Sbjct: 71 VTFVGVAGLD 80
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+E K ++++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG 55
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 18/58 (31%)
Query: 425 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 482
++PIP+ G V++ LE + +C HC EP +K AK +
Sbjct: 32 ANPIPQQQAGKVEV------------------LEFFGYFCPHCAHLEPVLSKHAKSFK 71
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493
K +L +APWC CQ P ++A V + +A +D
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
>pdb|1VZ6|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ6|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|C Chain C, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|D Chain D, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
Length = 393
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 302 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 360
Query: 488 VIA 490
VI
Sbjct: 361 VIG 363
>pdb|3QPF|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QPF|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QRY|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QRY|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QSP|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
pdb|3QSP|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
Length = 426
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 222 VVLGYLNSL-----VGSESEVLADASRLEDDV-----NFYQTTNPDVAKIF 262
VVLGY+ + + V+ADA RL+D++ N+ TTN KI+
Sbjct: 235 VVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYAYTTNSKGEKIY 285
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483
+E K +++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAG 55
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176
F CG+C + AN+ + +DA+E +LA ++ V G P I ++
Sbjct: 143 FVTTSCGYCPSAAVMAW----DFALANDYITSKVIDASENQDLAEQFQVVGVPKI--VIN 196
Query: 177 GQHKAYNGGRTKDAIVTWI 195
+ G + ++A + +I
Sbjct: 197 KGVAEFVGAQPENAFLGYI 215
>pdb|2VZK|D Chain D, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|F Chain F, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|H Chain H, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|B Chain B, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|D Chain D, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|F Chain F, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|H Chain H, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|B Chain B, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|D Chain D, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|H Chain H, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 122 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 180
Query: 488 VIA 490
VI
Sbjct: 181 VIG 183
>pdb|2VZK|B Chain B, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|F Chain F, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 432 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 122 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 180
Query: 488 VIA 490
VI
Sbjct: 181 VIG 183
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 445 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 478
+E+ D+ ++E +A W CQ+F P Y L+
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLS 52
>pdb|2Y6T|E Chain E, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|F Chain F, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|G Chain G, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|H Chain H, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
Length = 148
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 338 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 397
EK+ P + +A K ++IF+ Q D + ++ T N D +H+
Sbjct: 13 EKIAP-YPQAEKGMSRQVIFLEPQKDESRF------------KVELLIGKTLNVDCNRHM 59
Query: 398 LDGELTLDKIKTFGEDFL--EGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV 455
L G L + +G D+L + +P PE + VK V N D + + +
Sbjct: 60 LGGNLETRTLSGWGFDYLVMDKISQPASTMMACPEDSKPQVKFVTANLGDAAMQRYNSRL 119
Query: 456 LLEIYAP 462
+ +Y P
Sbjct: 120 PIVVYVP 126
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176
F CG+C + AN+ + +DA+E +LA ++ V G P I ++
Sbjct: 143 FVTTSCGYC----PSAAVXAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKI--VIN 196
Query: 177 GQHKAYNGGRTKDAIVTWI 195
+ G + ++A + +I
Sbjct: 197 KGVAEFVGAQPENAFLGYI 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,489,024
Number of Sequences: 62578
Number of extensions: 571264
Number of successful extensions: 1879
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 372
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)